Query 039828
Match_columns 626
No_of_seqs 495 out of 3066
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 3.7E-49 1.3E-53 422.4 35.0 325 6-376 7-362 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 4.9E-49 1.7E-53 421.5 35.8 335 6-376 40-395 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 7.2E-43 2.5E-47 360.3 31.0 296 10-354 22-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.6E-41 5.3E-46 351.7 26.1 303 7-368 18-323 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 5.2E-40 1.8E-44 329.7 28.6 265 51-356 4-284 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-39 4.4E-44 326.8 29.3 268 10-321 2-283 (285)
7 4g8k_A 2-5A-dependent ribonucl 100.0 6.9E-40 2.4E-44 338.0 27.8 282 49-376 22-319 (337)
8 3utm_A Tankyrase-1; tankyrase, 100.0 4.6E-38 1.6E-42 325.6 28.0 297 6-369 51-350 (351)
9 2fo1_E LIN-12 protein; beta-ba 100.0 5.5E-39 1.9E-43 335.8 19.0 289 14-347 67-369 (373)
10 2fo1_E LIN-12 protein; beta-ba 100.0 4.8E-39 1.6E-43 336.3 16.8 308 13-376 37-364 (373)
11 3d9h_A CDNA FLJ77766, highly s 100.0 3.3E-38 1.1E-42 317.2 21.4 271 48-352 11-281 (285)
12 3d9h_A CDNA FLJ77766, highly s 100.0 2.2E-37 7.5E-42 311.3 23.6 255 10-310 12-276 (285)
13 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-37 6.5E-42 307.7 21.5 254 51-345 2-259 (261)
14 3ljn_A Hypothetical protein; a 100.0 2.5E-38 8.7E-43 329.9 15.5 271 4-351 11-315 (364)
15 3ljn_A Hypothetical protein; a 100.0 7.2E-38 2.5E-42 326.5 16.5 280 45-377 13-309 (364)
16 2xai_A ASB-9, ankyrin repeat a 100.0 3.2E-37 1.1E-41 306.0 20.1 253 12-308 2-259 (261)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 9.4E-37 3.2E-41 301.2 21.8 241 90-347 3-246 (253)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-36 5.5E-41 299.5 21.3 229 6-272 3-244 (253)
19 1oy3_D Transcription factor in 100.0 1.2E-36 4.1E-41 305.0 19.9 270 45-372 2-272 (282)
20 1k1a_A B-cell lymphoma 3-encod 100.0 6.4E-36 2.2E-40 292.5 18.8 229 6-273 2-238 (241)
21 1oy3_D Transcription factor in 100.0 7.9E-36 2.7E-40 299.0 19.8 227 143-377 4-244 (282)
22 3aji_A 26S proteasome non-ATPa 100.0 6.4E-35 2.2E-39 283.6 22.9 226 10-274 3-228 (231)
23 3b7b_A Euchromatic histone-lys 100.0 8.1E-35 2.8E-39 284.1 23.5 218 143-371 6-223 (237)
24 3b7b_A Euchromatic histone-lys 100.0 1.3E-34 4.3E-39 282.7 24.8 220 7-265 5-224 (237)
25 1k1a_A B-cell lymphoma 3-encod 100.0 5E-35 1.7E-39 286.2 20.6 223 144-377 5-235 (241)
26 3aji_A 26S proteasome non-ATPa 100.0 2.6E-34 9E-39 279.3 22.2 219 148-377 6-224 (231)
27 2dzn_A Probable 26S proteasome 100.0 3E-34 1E-38 278.2 21.8 212 13-260 2-217 (228)
28 2dzn_A Probable 26S proteasome 100.0 9E-34 3.1E-38 274.8 21.9 211 148-367 2-217 (228)
29 4b93_B Ankyrin repeat domain-c 100.0 1.1E-34 3.6E-39 288.6 14.4 225 47-336 6-230 (269)
30 4b93_B Ankyrin repeat domain-c 100.0 1.3E-34 4.5E-39 287.9 13.5 217 143-369 6-229 (269)
31 1s70_B 130 kDa myosin-binding 100.0 4.5E-34 1.5E-38 289.1 16.3 238 49-333 37-274 (299)
32 2f8y_A Notch homolog 1, transl 100.0 4.3E-33 1.5E-37 269.2 22.2 213 127-350 4-216 (223)
33 1s70_B 130 kDa myosin-binding 100.0 1.9E-34 6.4E-39 291.9 12.6 272 58-368 4-275 (299)
34 3eu9_A Huntingtin-interacting 100.0 1.1E-32 3.7E-37 269.0 23.9 231 92-351 4-236 (240)
35 3eu9_A Huntingtin-interacting 100.0 1.4E-32 5E-37 268.1 24.2 227 48-310 5-233 (240)
36 3kea_A K1L; tropism, ANK repea 100.0 4.2E-33 1.4E-37 279.9 18.7 235 33-355 15-251 (285)
37 2f8y_A Notch homolog 1, transl 100.0 1.8E-32 6.3E-37 264.7 20.7 212 29-275 4-215 (223)
38 3kea_A K1L; tropism, ANK repea 100.0 1.1E-32 3.6E-37 277.0 18.2 226 127-377 13-240 (285)
39 1sw6_A Regulatory protein SWI6 100.0 4.2E-34 1.5E-38 293.1 8.0 294 11-368 21-326 (327)
40 1sw6_A Regulatory protein SWI6 100.0 7E-34 2.4E-38 291.4 3.8 259 49-377 20-302 (327)
41 1ikn_D Protein (I-kappa-B-alph 100.0 9E-33 3.1E-37 269.5 8.4 217 143-368 3-229 (236)
42 1ikn_D Protein (I-kappa-B-alph 100.0 9.4E-32 3.2E-36 262.3 14.5 216 7-259 2-227 (236)
43 2rfa_A Transient receptor pote 100.0 2.6E-30 8.8E-35 251.3 21.4 199 147-352 2-224 (232)
44 2rfa_A Transient receptor pote 100.0 1.7E-30 5.9E-35 252.5 19.2 214 12-278 2-224 (232)
45 3hra_A Ankyrin repeat family p 100.0 1.4E-29 4.9E-34 240.2 22.4 195 145-347 2-201 (201)
46 3hra_A Ankyrin repeat family p 100.0 1E-29 3.5E-34 241.2 19.4 189 181-376 3-196 (201)
47 2pnn_A Transient receptor pote 100.0 6.9E-30 2.4E-34 254.9 17.4 220 5-275 5-257 (273)
48 2pnn_A Transient receptor pote 100.0 3.1E-30 1.1E-34 257.4 13.6 213 143-363 8-272 (273)
49 4gpm_A Engineered protein OR26 100.0 4.2E-29 1.4E-33 229.5 18.5 159 185-353 6-164 (169)
50 2etb_A Transient receptor pote 100.0 2.1E-29 7.1E-34 248.9 17.0 192 147-347 1-244 (256)
51 2etb_A Transient receptor pote 100.0 5.2E-29 1.8E-33 246.0 16.4 216 12-274 1-244 (256)
52 3jxi_A Vanilloid receptor-rela 100.0 2E-28 6.8E-33 242.3 16.7 195 145-347 2-248 (260)
53 4gpm_A Engineered protein OR26 100.0 5.6E-28 1.9E-32 222.0 16.4 149 219-376 6-154 (169)
54 3jxi_A Vanilloid receptor-rela 100.0 2.9E-28 9.8E-33 241.2 13.6 203 10-240 2-248 (260)
55 3v30_A DNA-binding protein rfx 100.0 1.1E-27 3.8E-32 221.2 16.6 170 183-361 2-171 (172)
56 2aja_A Ankyrin repeat family p 99.9 1.2E-29 4E-34 262.9 1.2 286 13-376 65-367 (376)
57 4hbd_A KN motif and ankyrin re 99.9 8E-28 2.7E-32 240.2 13.4 192 148-347 76-273 (276)
58 4hbd_A KN motif and ankyrin re 99.9 2.3E-27 7.9E-32 236.8 12.4 186 183-376 76-268 (276)
59 3v30_A DNA-binding protein rfx 99.9 4.8E-26 1.6E-30 210.2 18.1 170 13-220 2-171 (172)
60 2rfm_A Putative ankyrin repeat 99.9 1.8E-26 6.2E-31 217.2 15.5 158 181-347 33-190 (192)
61 2aja_A Ankyrin repeat family p 99.9 7.4E-29 2.5E-33 256.9 -1.3 265 8-344 87-369 (376)
62 2rfm_A Putative ankyrin repeat 99.9 1.4E-26 5E-31 217.9 13.4 159 209-376 27-185 (192)
63 3v31_A Ankyrin repeat family A 99.9 6.2E-26 2.1E-30 208.4 16.6 157 182-347 2-158 (167)
64 3f6q_A Integrin-linked protein 99.9 4.5E-26 1.5E-30 212.0 15.4 168 182-358 4-171 (179)
65 1ihb_A P18-INK4C(INK6), cyclin 99.9 6.2E-26 2.1E-30 207.2 15.8 157 183-350 5-162 (162)
66 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.2E-25 4.1E-30 207.0 17.4 158 181-347 12-169 (169)
67 3v31_A Ankyrin repeat family A 99.9 1E-25 3.4E-30 207.0 15.8 152 216-376 2-153 (167)
68 3twr_A Tankyrase-2; ankyrin re 99.9 9.5E-26 3.2E-30 206.7 12.5 157 182-347 7-163 (165)
69 2vge_A RELA-associated inhibit 99.9 8.4E-28 2.9E-32 232.9 -1.5 200 165-376 2-206 (229)
70 1awc_B Protein (GA binding pro 99.9 2.3E-25 7.8E-30 201.5 14.1 149 185-343 4-152 (153)
71 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.2E-25 1.8E-29 199.7 16.4 154 183-346 2-155 (156)
72 1awc_B Protein (GA binding pro 99.9 6.6E-25 2.2E-29 198.4 16.2 150 218-377 3-152 (153)
73 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.6E-24 5.6E-29 199.4 17.9 161 143-310 9-169 (169)
74 3twr_A Tankyrase-2; ankyrin re 99.9 1.5E-25 5.1E-30 205.4 10.7 155 213-376 4-158 (165)
75 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.3E-24 4.5E-29 198.3 16.4 156 148-310 5-160 (162)
76 2vge_A RELA-associated inhibit 99.9 1.4E-27 4.7E-32 231.4 -4.9 202 131-344 2-208 (229)
77 3f6q_A Integrin-linked protein 99.9 1.1E-24 3.9E-29 202.4 14.6 162 10-242 2-163 (179)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.8E-24 9.5E-29 194.9 15.6 153 13-204 2-154 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.6E-26 1.2E-30 223.1 1.4 206 145-365 2-225 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.8E-25 6.3E-30 218.1 5.3 179 181-370 3-193 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 8.1E-24 2.8E-28 191.9 10.7 145 211-365 6-151 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 2.8E-23 9.5E-28 183.7 11.5 133 208-350 3-136 (136)
83 3t8k_A Uncharacterized protein 99.9 1.4E-23 5E-28 195.8 7.4 161 183-355 6-184 (186)
84 1d9s_A Cyclin-dependent kinase 99.9 2.7E-22 9.1E-27 177.3 11.7 131 5-172 4-135 (136)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 3.9E-22 1.3E-26 180.8 12.0 143 179-331 8-151 (156)
86 3t8k_A Uncharacterized protein 99.9 5.3E-23 1.8E-27 191.9 5.7 149 217-376 6-172 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.6E-21 8.8E-26 168.0 14.3 126 216-350 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-21 4.6E-26 172.8 12.5 127 213-347 10-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.1E-21 2.4E-25 165.2 15.1 125 12-172 1-125 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 2.7E-21 9.2E-26 170.8 12.2 126 9-170 10-135 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.8 2.1E-21 7E-26 171.8 8.8 123 246-376 5-127 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.8 4.3E-21 1.5E-25 169.7 7.8 128 212-347 5-132 (137)
93 3deo_A Signal recognition part 99.8 9.3E-21 3.2E-25 176.6 9.5 140 10-205 41-181 (183)
94 3aaa_C Myotrophin, protein V-1 99.8 1.7E-20 5.8E-25 162.5 10.0 112 248-367 4-115 (123)
95 3ui2_A Signal recognition part 99.8 1.5E-20 5E-25 183.8 10.3 109 12-157 44-153 (244)
96 3ehr_A Osteoclast-stimulating 99.8 7.6E-21 2.6E-25 183.1 7.7 138 212-358 68-206 (222)
97 3deo_A Signal recognition part 99.8 1.6E-20 5.5E-25 175.0 9.4 109 182-296 43-152 (183)
98 2b0o_E UPLC1; arfgap, structur 99.8 8E-20 2.8E-24 184.1 14.4 142 215-371 149-299 (301)
99 3aaa_C Myotrophin, protein V-1 99.8 5.2E-20 1.8E-24 159.5 9.5 113 214-334 4-116 (123)
100 2b0o_E UPLC1; arfgap, structur 99.8 1.3E-19 4.5E-24 182.5 13.6 140 183-337 151-299 (301)
101 3ui2_A Signal recognition part 99.8 6.9E-20 2.4E-24 179.0 11.2 140 181-347 43-183 (244)
102 1dcq_A PYK2-associated protein 99.8 4.5E-19 1.5E-23 176.5 14.2 192 144-347 62-261 (278)
103 3ehr_A Osteoclast-stimulating 99.8 4.1E-19 1.4E-23 170.8 8.8 124 182-310 72-196 (222)
104 1dcq_A PYK2-associated protein 99.8 1.2E-17 3.9E-22 166.3 19.3 126 149-276 131-263 (278)
105 3jue_A Arfgap with coiled-coil 99.8 1.6E-18 5.5E-23 178.7 12.9 148 213-368 195-347 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.7 4.1E-18 1.4E-22 184.2 13.5 129 217-354 132-269 (497)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.7 7.9E-18 2.7E-22 137.8 11.2 91 250-347 1-91 (93)
108 2l6b_A NR1C; ankyrin, consensu 99.7 3.2E-18 1.1E-22 146.1 8.0 109 246-362 4-112 (115)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.7 1.1E-17 3.6E-22 137.0 10.4 93 12-139 1-93 (93)
110 3jue_A Arfgap with coiled-coil 99.7 1.5E-17 5.1E-22 171.4 12.9 148 182-335 198-348 (368)
111 3lvq_E ARF-GAP with SH3 domain 99.7 3.4E-17 1.2E-21 177.1 14.5 136 184-334 133-277 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.7 3E-17 1E-21 140.1 7.6 109 212-328 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 1.2E-15 4.1E-20 129.0 8.3 86 284-374 21-106 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 3.7E-15 1.3E-19 125.9 9.7 93 244-343 17-109 (110)
115 2knc_B Integrin beta-3; transm 32.9 35 0.0012 25.5 3.2 18 571-588 11-28 (79)
116 3gvo_A Pumilio 2, pumilio homo 26.2 66 0.0022 31.7 5.0 56 246-302 212-268 (351)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-49 Score=422.41 Aligned_cols=325 Identities=24% Similarity=0.303 Sum_probs=185.9
Q ss_pred cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828 6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID 85 (626)
Q Consensus 6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 85 (626)
.+..|..|.||||+||..|+ .+ +|++|++++.+ ++.+|..|+||||+||..|+.++|++|++++++++
T Consensus 7 ~~~~~~~g~t~L~~Aa~~g~---~~--~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------ 74 (437)
T 1n11_A 7 GGGGGESGLTPLHVASFMGH---LP--IVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN------ 74 (437)
T ss_dssp --------CCHHHHHHHHTC---HH--HHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS------
T ss_pred ccccCCCCCCHHHHHHHCCC---HH--HHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------
Confidence 35677788888888888888 77 88888887765 67778888888888888888888888888877653
Q ss_pred hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828 86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE 165 (626)
Q Consensus 86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (626)
.++.+|.||||+|+. .++ .+++++|++++++++ ..+..|.||||+|+..|+.++++
T Consensus 75 ------~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~ 130 (437)
T 1n11_A 75 ------AKAKDDQTPLHCAAR-------IGH----------TNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVL 130 (437)
T ss_dssp ------CCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHH
T ss_pred ------CCCCCCCCHHHHHHH-------CCC----------HHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHH
Confidence 245555666666655 455 555555555544443 34444445555555555554444
Q ss_pred HHHHhCCCC-------------------------------CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccC
Q 039828 166 YILEALPVN-------------------------------DDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQD 214 (626)
Q Consensus 166 ~Ll~~~~~~-------------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d 214 (626)
+|++.+... +....+..|.||||.|+..|+.+++++|++.+ ..++..+
T Consensus 131 ~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~ 209 (437)
T 1n11_A 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPA 209 (437)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCC
T ss_pred HHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCcC
Confidence 444443311 11222333444444444444444444444444 3334444
Q ss_pred CCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHH
Q 039828 215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA 294 (626)
Q Consensus 215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A 294 (626)
..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||.|+..|+.+++++|++++.+++ ..+..|+||||+|
T Consensus 210 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A 285 (437)
T 1n11_A 210 WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLV 285 (437)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC---CCCCCCCCHHHHH
Confidence 4455555555555555555555555444 44455555555555555555555555555443332 2355566666666
Q ss_pred HHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccc
Q 039828 295 AKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIP 374 (626)
Q Consensus 295 ~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~ 374 (626)
+..|+.+++++|++.+ .++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++
T Consensus 286 ~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv 360 (437)
T 1n11_A 286 AQEGHVPVADVLIKHG----VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIV 360 (437)
T ss_dssp HHHTCHHHHHHHHHHT----CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHhCC----ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHH
Confidence 6666666666666665 556666666666666666666666666666666 66666666666666666666555544
Q ss_pred cc
Q 039828 375 EF 376 (626)
Q Consensus 375 ~~ 376 (626)
++
T Consensus 361 ~~ 362 (437)
T 1n11_A 361 TL 362 (437)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-49 Score=421.46 Aligned_cols=335 Identities=25% Similarity=0.307 Sum_probs=294.2
Q ss_pred cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch-
Q 039828 6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI- 84 (626)
Q Consensus 6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~- 84 (626)
.+..|..|+||||+||..|+ .+ ++++|++.+.+ ++.+|..|+||||+|+..|+.++|++|+++|++++.....
T Consensus 40 ~~~~~~~~~t~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g 113 (437)
T 1n11_A 40 PNVSNVKVETPLHMAARAGH---TE--VAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113 (437)
T ss_dssp SCCSSSCCCCHHHHHHHHTC---HH--HHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred CCCCCCCCCCHHHHHHHcCC---HH--HHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCC
Confidence 35678889999999999999 88 99999998876 8889999999999999999999999999998876421110
Q ss_pred --------------hhhHHH------HhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccccc
Q 039828 85 --------------DVKFLM------EMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLM 144 (626)
Q Consensus 85 --------------~~~~~l------~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~ 144 (626)
-.+.++ +..+..|.||||+|+. .++ .+++++|++++.+++ ..
T Consensus 114 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~g~~~~-~~ 175 (437)
T 1n11_A 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK-------YGK----------VRVAELLLERDAHPN-AA 175 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CC
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCCC-CC
Confidence 011111 2235566777777777 777 899999999999887 77
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHH
Q 039828 145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 224 (626)
Q Consensus 145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 224 (626)
+..|.||||+|+..|+.+++++|++.+.. ....+..|.||||.|+..|+.++++.|++.+ ..++..+..|.||||+|
T Consensus 176 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A 252 (437)
T 1n11_A 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLA 252 (437)
T ss_dssp CSSCCCHHHHHHHTTCHHHHHHHGGGTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence 88999999999999999999999999874 3445567999999999999999999999998 67888999999999999
Q ss_pred hhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHH
Q 039828 225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVT 304 (626)
Q Consensus 225 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~ 304 (626)
+..|+.+++++|++.+++ .+..+..|.||||+|+..|+.+++++|+++|...+ .+|..|+||||+|+.+|+.++++
T Consensus 253 ~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~v~ 328 (437)
T 1n11_A 253 AQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNIKLVK 328 (437)
T ss_dssp HHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT---CCCSSCCCHHHHHHHSSCSHHHH
T ss_pred HHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC---CCCCCCCCHHHHHHHcCcHHHHH
Confidence 999999999999999988 78889999999999999999999999999886554 45889999999999999999999
Q ss_pred HHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828 305 HILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 305 ~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
+|++.| +++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|.+|+||+++|.+.++..++++
T Consensus 329 ~Ll~~g----ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g~~~~~~~ 395 (437)
T 1n11_A 329 FLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVTDV 395 (437)
T ss_dssp HHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred HHHhcC----CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCcHHHHHH
Confidence 999998 889999999999999999999999999999999 9999999999999999999988766665
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.2e-43 Score=360.32 Aligned_cols=296 Identities=16% Similarity=0.114 Sum_probs=260.0
Q ss_pred cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCccccccccc-CCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNS-KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF 88 (626)
Q Consensus 10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 88 (626)
+.+|+|+||.|+..|+ .+ +|++||++|++ ++.++. .|+||||+||..|+.++|++|+++|+++.
T Consensus 22 ~~~~~t~L~~Av~~g~---~~--~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~--------- 86 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNED---VD--LVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV--------- 86 (337)
T ss_dssp HHHHHHHHHHHHHTTC---HH--HHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred CCCCChHHHHHHHcCC---HH--HHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh---------
Confidence 4568999999999999 88 99999999986 777765 59999999999999999999999998763
Q ss_pred HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828 89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL 168 (626)
Q Consensus 89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (626)
.++..+.++++.++. .+. ..+...+++.+.+++ ..|..|.||||+|+..|+.+++++|+
T Consensus 87 ---~~~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll 145 (337)
T 4g8k_A 87 ---LRKKNGATPFILAAI-------AGS----------VKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLY 145 (337)
T ss_dssp ---CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred ---hhccCCCchhHHHHh-------ccc----------chhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHH
Confidence 478899999999999 888 999999999999987 78999999999999999999999999
Q ss_pred HhCCCCCcc--------ccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCC----HHHHHHh
Q 039828 169 EALPVNDDC--------DAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH----LEGVRFL 236 (626)
Q Consensus 169 ~~~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~L 236 (626)
+.++..+.. ..+..|.||||.|+..|+.+++++|+++.+.+++.+|..|.|++|.++..+. .+++++|
T Consensus 146 ~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL 225 (337)
T 4g8k_A 146 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225 (337)
T ss_dssp HTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH
T ss_pred HcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH
Confidence 988754322 2345689999999999999999999987668899999999999998775433 4688999
Q ss_pred hhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhh
Q 039828 237 YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL 316 (626)
Q Consensus 237 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~ 316 (626)
++++++ ++.+|..|.||||+|+..|+.++++.|++. ....++.+|..|+||||+|+++|+.+++++|+++| ++
T Consensus 226 l~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~--~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G----Ad 298 (337)
T 4g8k_A 226 LDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG----AS 298 (337)
T ss_dssp HHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTS--TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS----CS
T ss_pred HHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHh--cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC----CC
Confidence 999998 888999999999999999999999999983 33445667999999999999999999999999998 55
Q ss_pred cccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccc
Q 039828 317 INEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDII 354 (626)
Q Consensus 317 in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~ 354 (626)
+| +.||||+|++.|+.++|++|+++| +++|..
T Consensus 299 ~n-----~~~~L~~A~~~~~~~iv~~Ll~~G-A~~d~~ 330 (337)
T 4g8k_A 299 TD-----CGDLVMTARRNYDHSLVKVLLSHG-AKEDFH 330 (337)
T ss_dssp ST-----TCCHHHHHHHTTCHHHHHHHHHTT-CCC---
T ss_pred CC-----CCCHHHHHHHcCCHHHHHHHHHCc-CCCCCC
Confidence 55 456999999999999999999999 998864
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.6e-41 Score=351.67 Aligned_cols=303 Identities=21% Similarity=0.194 Sum_probs=271.8
Q ss_pred ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhh
Q 039828 7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDV 86 (626)
Q Consensus 7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 86 (626)
...+..|.|+||.||..|+ .+ .++.++...+..++.+|..|+||||+|+..|+.++|++|+++|+++
T Consensus 18 ~~~~~~~~~~L~~A~~~g~---~~--~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------- 84 (351)
T 3utm_A 18 VLTGEYKKDELLEAARSGN---EE--KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-------- 84 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTC---HH--HHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------
T ss_pred eeeccccchhHHHHHHcCC---HH--HHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------
Confidence 3456778999999999999 88 9999999877778999999999999999999999999999999865
Q ss_pred hHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q 039828 87 KFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEY 166 (626)
Q Consensus 87 ~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (626)
+.+|..|.||||+|+. .++ .+++++|++++.+++ ..|..|.||||+|+..|+.+++++
T Consensus 85 ----~~~~~~g~t~L~~A~~-------~g~----------~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~ 142 (351)
T 3utm_A 85 ----HAKDKGGLVPLHNACS-------YGH----------YEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSL 142 (351)
T ss_dssp ----TCCCTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred ----CccCCCCCcHHHHHHH-------CCC----------HHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHH
Confidence 3478899999999999 999 999999999999987 788999999999999999999999
Q ss_pred HHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccc
Q 039828 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ 246 (626)
Q Consensus 167 Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~ 246 (626)
|++++.. ....+..|.+|++.|+..+..+.+++.... ++++.++..++.+.++.++..... ...
T Consensus 143 Ll~~g~~--~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 206 (351)
T 3utm_A 143 LLSHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII-NFK 206 (351)
T ss_dssp HHHTTCC--TTCCCTTSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT-TCC
T ss_pred HHHcCCC--CccccCCCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc-ccc
Confidence 9999874 445567899999999988888887776543 478889999999999999987765 556
Q ss_pred cCCCCChHHHHHHhc---CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCC
Q 039828 247 KNEEGLYPFHLASAN---GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD 323 (626)
Q Consensus 247 ~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~ 323 (626)
.+..|.||||.|+.. +..+++++|+++|.+++ .+|..|+||||+|+.+|+.+++++|++.| +++|.+|..
T Consensus 207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~n~~d~~ 279 (351)
T 3utm_A 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVN---EKNKDFMTPLHVAAERAHNDVMEVLHKHG----AKMNALDSL 279 (351)
T ss_dssp CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTT
T ss_pred CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC---CcCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCC
Confidence 788999999999999 55899999999876554 45889999999999999999999999998 889999999
Q ss_pred CCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828 324 GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368 (626)
Q Consensus 324 G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~ 368 (626)
|+||||+|+..|+.+++++|+++| ++++.+|..|+||+++|.+.
T Consensus 280 g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a~~~ 323 (351)
T 3utm_A 280 GQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMGNEA 323 (351)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHSCHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCChhhhhhHH
Confidence 999999999999999999999999 99999999999999998554
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-40 Score=329.66 Aligned_cols=265 Identities=20% Similarity=0.214 Sum_probs=193.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHH
Q 039828 51 KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLA 130 (626)
Q Consensus 51 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~ 130 (626)
+|+||||.|++.|+.++|++|++.+++++. ..+..|.||||+|+. .++ .+++
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------~~~~~g~t~L~~A~~-------~g~----------~~~v 55 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----------QEEEGGWTPLHNAVQ-------MSR----------EDIV 55 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC-----------CCTTTCCCHHHHHHH-------TTC----------HHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCccc-----------ccCCCCCcHHHHHHH-------cCC----------HHHH
Confidence 355666666666666666666665554321 014455666666665 555 6666
Q ss_pred HHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccc
Q 039828 131 RSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL 210 (626)
Q Consensus 131 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 210 (626)
++|++++.++. ..+..|.||||+|+..|+.+++++|++.+.. ....+..|.||||.|+..|+.+++++|++.+ ..+
T Consensus 56 ~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~ 131 (285)
T 1wdy_A 56 ELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD--VNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANV 131 (285)
T ss_dssp HHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred HHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCc
Confidence 66666655554 4555566666666666666666666665542 2333445666666666666666666666655 333
Q ss_pred ccc----------CCCCCchhhHHhhCCCHHHHHHhhhc-CCCcccccCCCCChHHHHHHhcCC----hHHHHHHHhccC
Q 039828 211 LIQ----------DEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASANGC----VPVMGEFLEKEN 275 (626)
Q Consensus 211 ~~~----------d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~g~ 275 (626)
+.. +..|.||||+|+..|+.+++++|++. +.+ ++..|..|.||||.|+..++ .+++++|+++|.
T Consensus 132 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC
T ss_pred ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC
Confidence 333 77889999999999999999999987 655 78889999999999999998 899999999876
Q ss_pred CCCCcccccCCCchHHHHHHHcCChHHHHHHHH-cCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccc
Q 039828 276 MPHPNELFNNKGQNILHVAAKKGRDVSVTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDII 354 (626)
Q Consensus 276 ~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~-~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~ 354 (626)
+++ .+|..|+||||+|+.+|+.+++++|++ .+ .+++.+|..|+||||+|+..++.+++++|+++| ++++.+
T Consensus 211 ~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g----~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G-a~~~~~ 282 (285)
T 1wdy_A 211 DVN---VRGERGKTPLILAVEKKHLGLVQRLLEQEH----IEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCG 282 (285)
T ss_dssp CSS---CCCTTSCCHHHHHHHTTCHHHHHHHHHSSS----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCS
T ss_pred CCC---CcCCCCCcHHHHHHHcCCHHHHHHHHhccC----CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCCcc
Confidence 554 458889999999999999999999999 55 788999999999999999999999999999999 999988
Q ss_pred cc
Q 039828 355 NF 356 (626)
Q Consensus 355 n~ 356 (626)
|.
T Consensus 283 d~ 284 (285)
T 1wdy_A 283 DL 284 (285)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-39 Score=326.79 Aligned_cols=268 Identities=16% Similarity=0.123 Sum_probs=242.3
Q ss_pred cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCccccccc-ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQ-NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF 88 (626)
Q Consensus 10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 88 (626)
+.+|+|+||+|+..|+ .+ ++++|++.+++ ++.. +..|.||||+|+..|+.+++++|+++|+++.
T Consensus 2 ~~~g~~~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------- 66 (285)
T 1wdy_A 2 AVEDNHLLIKAVQNED---VD--LVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV--------- 66 (285)
T ss_dssp HHHHHHHHHHHHHTTC---HH--HHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred CcccchHHHHHHHcCC---HH--HHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc---------
Confidence 3468999999999999 88 99999999887 5555 8889999999999999999999999998653
Q ss_pred HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828 89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL 168 (626)
Q Consensus 89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (626)
.+|..|.||||+|+. .++ .+++++|++++.+++ ..+..|.||||+|+..|+.+++++|+
T Consensus 67 ---~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll 125 (285)
T 1wdy_A 67 ---LRKKNGATPFLLAAI-------AGS----------VKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLY 125 (285)
T ss_dssp ---CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred ---ccCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHH
Confidence 478899999999999 999 999999999999987 77899999999999999999999999
Q ss_pred HhCCCCCcccc--------ccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCC----HHHHHHh
Q 039828 169 EALPVNDDCDA--------KLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDH----LEGVRFL 236 (626)
Q Consensus 169 ~~~~~~~~~~~--------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~L 236 (626)
+.+...+.... +..|.||||.|+..|+.+++++|++..+..++..|..|.||||+|+..++ .+++++|
T Consensus 126 ~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~L 205 (285)
T 1wdy_A 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205 (285)
T ss_dssp HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH
T ss_pred HhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHH
Confidence 99875443221 56799999999999999999999998558899999999999999999999 9999999
Q ss_pred hhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHh-ccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchh
Q 039828 237 YEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE-KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDK 315 (626)
Q Consensus 237 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~ 315 (626)
++.+++ ++.+|..|.||||+|+..|+.+++++|++ .|.+ .+.+|..|+||||+|+.+++.+++++|+++| +
T Consensus 206 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G----a 277 (285)
T 1wdy_A 206 LDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKRG----A 277 (285)
T ss_dssp HHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS----S
T ss_pred HHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHHcC----C
Confidence 999988 88899999999999999999999999999 5544 4456899999999999999999999999999 7
Q ss_pred hcccCC
Q 039828 316 LINEMD 321 (626)
Q Consensus 316 ~in~~d 321 (626)
+++.+|
T Consensus 278 ~~~~~d 283 (285)
T 1wdy_A 278 STDCGD 283 (285)
T ss_dssp CSCCSS
T ss_pred CCCccc
Confidence 777776
No 7
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.9e-40 Score=338.01 Aligned_cols=282 Identities=20% Similarity=0.213 Sum_probs=247.5
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhcc-CCCCHHHHHHHhhhhhhccCCCCCCCCCCcHH
Q 039828 49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNV-RGNTALHEALNALQDAKKDKNKPKEDGVTSLD 127 (626)
Q Consensus 49 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~-~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~ 127 (626)
+.+|+||||.|+++|+.++|++|+++|++++ .++. .|.||||+|+. .++ .
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn------------~~~~~~g~TpLh~A~~-------~g~----------~ 72 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVN------------FQEEEGGWTPLHNAVQ-------MSR----------E 72 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTT------------CCCTTTCCCHHHHHHH-------TTC----------H
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCC------------ccCCCCCcCHHHHHHH-------cCC----------H
Confidence 4568899999999999999999999999764 3444 59999999999 999 9
Q ss_pred HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q 039828 128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP 207 (626)
Q Consensus 128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 207 (626)
+++++|+++++++. ..+..+.+|++.++..+...++..+++.+. +....+..|.||+|.|+..|+.+++++|++.+
T Consensus 73 ~iv~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g- 148 (337)
T 4g8k_A 73 DIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRG- 148 (337)
T ss_dssp HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHTTTC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCchh-hhccCCCchhHHHHhcccchhhHHhhhccc--hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC-
Confidence 99999999999988 788999999999999999999999999876 44556778999999999999999999999987
Q ss_pred cccc----------ccCCCCCchhhHHhhCCCHHHHHHhhhc-CCCcccccCCCCChHHHHHHhcCC----hHHHHHHHh
Q 039828 208 ALLL----------IQDEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASANGC----VPVMGEFLE 272 (626)
Q Consensus 208 ~~~~----------~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~ 272 (626)
..++ ..+..|.||||+|+..|+.+++++|++. +++ ++..|..|.||+|.++..+. .+++++|++
T Consensus 149 a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~ 227 (337)
T 4g8k_A 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227 (337)
T ss_dssp CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH
Confidence 3333 3456799999999999999999999975 565 88899999999998876554 457899999
Q ss_pred ccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc
Q 039828 273 KENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352 (626)
Q Consensus 273 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~ 352 (626)
+|++++ .+|..|+||||+|+..|+.+++++|++.. ..++|.+|.+|+||||+|++.|+.+++++|+++| +++|
T Consensus 228 ~gad~n---~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~---~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Ad~n 300 (337)
T 4g8k_A 228 HGADVN---VRGERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTD 300 (337)
T ss_dssp TTCCTT---CCCGGGCCHHHHHHHTTCHHHHHHHHTST---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-CSST
T ss_pred CCCCCC---CcCCCCCCHHHHHHHhhhhHHHHHHHHhc---CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCC
Confidence 886654 45889999999999999999999999863 3789999999999999999999999999999999 8886
Q ss_pred ccccCCCCHHHHHHHhcccccccc
Q 039828 353 IINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 353 ~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
. .+||++|+..++.+++++
T Consensus 301 ~-----~~~L~~A~~~~~~~iv~~ 319 (337)
T 4g8k_A 301 C-----GDLVMTARRNYDHSLVKV 319 (337)
T ss_dssp T-----CCHHHHHHHTTCHHHHHH
T ss_pred C-----CCHHHHHHHcCCHHHHHH
Confidence 5 469999999988777765
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.6e-38 Score=325.58 Aligned_cols=297 Identities=19% Similarity=0.192 Sum_probs=250.5
Q ss_pred cccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828 6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID 85 (626)
Q Consensus 6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 85 (626)
.+.+|..|+||||+||..|+ .+ ++++|++.+.+ ++.+|..|+||||+|+..|+.++|++|+++|+++
T Consensus 51 ~~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~------- 117 (351)
T 3utm_A 51 CHASDGRKSTPLHLAAGYNR---VR--IVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV------- 117 (351)
T ss_dssp CCCSSTTCCCHHHHHHHTTC---HH--HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------
T ss_pred cccCCCCCCCHHHHHHHcCC---HH--HHHHHHHcCCC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-------
Confidence 45678999999999999999 88 99999999876 8999999999999999999999999999999865
Q ss_pred hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828 86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE 165 (626)
Q Consensus 86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (626)
+..|..|.||||+|+. .++ .+++++|++++.++. ..+..|.+|+++|+..+..+.+.
T Consensus 118 -----~~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~ 174 (351)
T 3utm_A 118 -----NAMDLWQFTPLHEAAS-------KNR----------VEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLT 174 (351)
T ss_dssp -----TCCCTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHH
T ss_pred -----CCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHH
Confidence 3478899999999999 999 999999999999987 77999999999999988888887
Q ss_pred HHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhC---CCHHHHHHhhhcCCC
Q 039828 166 YILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV---DHLEGVRFLYEINPD 242 (626)
Q Consensus 166 ~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~ 242 (626)
+.... .++..++..++.+.++.++... ......+..|.||||+|+.. +..+++++|++.+.+
T Consensus 175 ~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~ 239 (351)
T 3utm_A 175 YEFKG--------------HSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239 (351)
T ss_dssp HHHHH--------------HHHHHHHHTTCHHHHHHHTTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred hhhcc--------------cHHHHHHHhccHHHHHHHHHhh-cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence 76653 3678888999999999999887 34445778899999999999 558999999999988
Q ss_pred cccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCC
Q 039828 243 SVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDD 322 (626)
Q Consensus 243 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~ 322 (626)
++.+|..|.||||+|+..|+.+++++|+++|.+++. +|..|+||||+|+.+|+.+++++|++.| ++++.+|.
T Consensus 240 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----ad~~~~~~ 311 (351)
T 3utm_A 240 -VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA---LDSLGQTALHRAALAGHLQTCRLLLSYG----SDPSIISL 311 (351)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCT
T ss_pred -cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---cCCCCCCHHHHHHHcCcHHHHHHHHHcC----CCCCCcCC
Confidence 888999999999999999999999999998866544 5899999999999999999999999998 88999999
Q ss_pred CCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhc
Q 039828 323 DGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQY 369 (626)
Q Consensus 323 ~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~ 369 (626)
.|+||+|+| ..+++++|.+... ....++.+++..|++.|
T Consensus 312 ~g~tal~~a----~~~~~~~l~~~~~----~~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 312 QGFTAAQMG----NEAVQQILSESTP----MRTSDVDYRLLEASKAG 350 (351)
T ss_dssp TSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred CCCChhhhh----hHHHHHHHHhccc----cccCcceeehhhhhccC
Confidence 999999998 6788888887762 33456778888887764
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-39 Score=335.81 Aligned_cols=289 Identities=15% Similarity=0.179 Sum_probs=219.8
Q ss_pred CcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhh
Q 039828 14 NTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMK 93 (626)
Q Consensus 14 ~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~ 93 (626)
.++++-+...|+ .+ ++++++.. .+|..|+||||+|+..++ ++++.|+... ++..
T Consensus 67 ~~~~~~~~~~g~---~~--~~~~~~~~------~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--------------~n~~ 120 (373)
T 2fo1_E 67 QGYGNGNDFLGD---FN--HTNLQIPT------EPEPESPIKLHTEAAGSY-AITEPITRES--------------VNII 120 (373)
T ss_dssp --------------------------------------CCCHHHHHHHSSS-CCCSCCSTTT--------------TTTC
T ss_pred cccCCCCCcccc---cc--cccccccc------CCCCCCccHHHHHhcCCc-hHHHHhcccc--------------cccc
Confidence 345666777788 77 77776543 468899999999999654 7777775422 2346
Q ss_pred c-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828 94 N-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP 172 (626)
Q Consensus 94 ~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (626)
| ..|.||||+|+. .++.... ...+...++.|++.+.+++ ..|.+|.||||+|+..|+.+++++|++.++
T Consensus 121 d~~~g~t~Lh~Aa~-------~g~~~~v--~~Ll~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 190 (373)
T 2fo1_E 121 DPRHNRTVLHWIAS-------NSSAEKS--EDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGA 190 (373)
T ss_dssp CCSSCCCHHHHHHC-------TTCCSCC--TTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCcCCCCHHHHHHH-------CCCHHHH--HHHHHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCC
Confidence 6 789999999998 7772111 1112344566678999987 778999999999999999999999999987
Q ss_pred CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC--ccccccCCCCCchhhHHhhCC---CHHHHHHhhhcCCCcccc-
Q 039828 173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP--ALLLIQDEQMNTPMHWAASVD---HLEGVRFLYEINPDSVLQ- 246 (626)
Q Consensus 173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~d~~g~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~- 246 (626)
. ....+..|.||||.|+..|+.+++++|++.+. .+++..|..|.||||+|+..+ +.+++++|++.+++ ++.
T Consensus 191 ~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~ 267 (373)
T 2fo1_E 191 D--PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYD 267 (373)
T ss_dssp C--SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCC
T ss_pred C--CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccc
Confidence 4 44556689999999999999999999998763 467888999999999999988 89999999999887 432
Q ss_pred -------cCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhccc
Q 039828 247 -------KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINE 319 (626)
Q Consensus 247 -------~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~ 319 (626)
.|..|.||||+|+..|+.+++++|++++ ....+.+|..|+||||+|+.+|+.+++++|++.| ++++.
T Consensus 268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g----ad~~~ 341 (373)
T 2fo1_E 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEA 341 (373)
T ss_dssp SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCSSC
T ss_pred cccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccC
Confidence 5778999999999999999999999864 2334556899999999999999999999999998 88999
Q ss_pred CCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828 320 MDDDGNTPLHLAALYGHYFVAVILGKDG 347 (626)
Q Consensus 320 ~d~~G~TpLhlA~~~~~~~iv~~Ll~~g 347 (626)
+|..|+||||+|+..|+.+++++|++++
T Consensus 342 ~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 342 VDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp CCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999999999999999999999887
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.8e-39 Score=336.27 Aligned_cols=308 Identities=16% Similarity=0.187 Sum_probs=220.1
Q ss_pred CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM 92 (626)
Q Consensus 13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~ 92 (626)
-+.+|+.++..|+ .+ .++.++++.... . .-.++++-+...|+.+++++++...
T Consensus 37 ~~~~l~~~~~~~~---~~--~~~~~~~~~~~~-~----~~~~~~~~~~~~g~~~~~~~~~~~~----------------- 89 (373)
T 2fo1_E 37 SQHSLLEASYDGY---IK--RQRNELQHYSLY-P----NPQGYGNGNDFLGDFNHTNLQIPTE----------------- 89 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCcc---cc--chhhhhhhhccc-c----CccccCCCCCccccccccccccccC-----------------
Confidence 4556777888888 77 777777765442 1 2245677788889999999887542
Q ss_pred hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHH---
Q 039828 93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMN-VDCKSPLYLAVESKNEDILEYIL--- 168 (626)
Q Consensus 93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll--- 168 (626)
++..|.||||+|+. .+. ++++.|+.. +++ ..| ..|+||||+|+..|+.+++++|+
T Consensus 90 ~~~~g~t~L~~Aa~-------~~~-----------~~~~~L~~~--~~n-~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~ 148 (373)
T 2fo1_E 90 PEPESPIKLHTEAA-------GSY-----------AITEPITRE--SVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHE 148 (373)
T ss_dssp ----CCCHHHHHHH-------SSS-----------CCCSCCSTT--TTT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHH
T ss_pred CCCCCccHHHHHhc-------CCc-----------hHHHHhccc--ccc-ccCCcCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 57889999999997 443 344555544 333 344 78999999999999998888776
Q ss_pred -----HhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcC---
Q 039828 169 -----EALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEIN--- 240 (626)
Q Consensus 169 -----~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~--- 240 (626)
+.+. +....+..|.||||+|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+
T Consensus 149 ~~~ll~~ga--~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 225 (373)
T 2fo1_E 149 AKECIAAGA--DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225 (373)
T ss_dssp HHHHHHTCC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred HHHHHhcCC--CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence 5665 44556678999999999999999999999998 778899999999999999999999999999987
Q ss_pred CCcccccCCCCChHHHHHHhcC---ChHHHHHHHhccCCCCC-----cccccCCCchHHHHHHHcCChHHHHHHHHcCCc
Q 039828 241 PDSVLQKNEEGLYPFHLASANG---CVPVMGEFLEKENMPHP-----NELFNNKGQNILHVAAKKGRDVSVTHILEASDL 312 (626)
Q Consensus 241 ~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~g~~~~~-----~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~ 312 (626)
.+ .+..|..|.||||+|+..+ +.+++++|+++|.+++. .+..|..|+||||+|+.+|+.+++++|++.+
T Consensus 226 ~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-- 302 (373)
T 2fo1_E 226 GD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-- 302 (373)
T ss_dssp HT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--
T ss_pred cC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--
Confidence 44 7788999999999999998 89999999999877765 2235778999999999999999999999875
Q ss_pred chhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828 313 TDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 313 ~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
..++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|...++.+++++
T Consensus 303 -~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~ 364 (373)
T 2fo1_E 303 -GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDI 364 (373)
T ss_dssp -CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred -CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 3789999999999999999999999999999999 9999999999999999999999888776
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=317.25 Aligned_cols=271 Identities=16% Similarity=0.133 Sum_probs=200.3
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHH
Q 039828 48 QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLD 127 (626)
Q Consensus 48 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~ 127 (626)
....|.|+||+|+..|+.+.+..++..++........ ....++.+|..|+||||+|+. .++ .
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~g~t~L~~Aa~-------~g~----------~ 72 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL-LSNPLMGDAVSDWSPMHEAAI-------HGH----------Q 72 (285)
T ss_dssp -------------------------------CCSEEC-CCCTTCSSSCCSCCHHHHHHH-------TTC----------H
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhh-hhCcccCCCccCCCHHHHHHH-------cCC----------H
Confidence 4568999999999999988887777665432111000 111245688999999999999 999 9
Q ss_pred HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q 039828 128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP 207 (626)
Q Consensus 128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 207 (626)
++++.|++++.+++ ..|.+|.||||+|+..|+.+++++|++.+. +....+..|.||||.|+..|+.+++++|++.+
T Consensus 73 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g- 148 (285)
T 3d9h_A 73 LSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGA--QVNGVTADWHTPLFNACVSGSWDCVNLLLQHG- 148 (285)
T ss_dssp HHHHHHHHTTCCSC-EECTTCCCHHHHHHHTTCHHHHHHHHHTTC--CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-
T ss_pred HHHHHHHHCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC-
Confidence 99999999998887 788899999999999999999999999876 44456678999999999999999999999988
Q ss_pred ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCC
Q 039828 208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKG 287 (626)
Q Consensus 208 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g 287 (626)
..++. +..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|.+++ .+..|
T Consensus 149 ~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----~~~~g 222 (285)
T 3d9h_A 149 ASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN----QGKGQ 222 (285)
T ss_dssp CCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT----CCBTT
T ss_pred CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC----CCCCC
Confidence 44443 44599999999999999999999999887 78889999999999999999999999999876655 27889
Q ss_pred chHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc
Q 039828 288 QNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352 (626)
Q Consensus 288 ~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~ 352 (626)
+||||+|+.+++.+++++|++.| ++++.+|.+|+||||+|+ ++.+++++|++...+++.
T Consensus 223 ~t~L~~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 223 DSPLHAVVRTASEELACLLMDFG----ADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 99999999999999999999998 889999999999999999 456899999988546654
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=311.30 Aligned_cols=255 Identities=16% Similarity=0.119 Sum_probs=205.3
Q ss_pred cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCc----------ccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCC
Q 039828 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYP----------FLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMT 79 (626)
Q Consensus 10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~----------~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~ 79 (626)
+..|.|+||+|+..|+ .+ .+..++...+ ..++.+|..|+||||+||..|+.++|++|++.|+++
T Consensus 12 ~~~~~~~lH~Aa~~g~---~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~- 85 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGK---QG--GMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV- 85 (285)
T ss_dssp -----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-
T ss_pred chHHHHHHHHHhhcCC---CC--CcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-
Confidence 4679999999999999 66 6666655432 235678999999999999999999999999998765
Q ss_pred CccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcC
Q 039828 80 SSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESK 159 (626)
Q Consensus 80 ~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 159 (626)
+.+|.+|.||||+|+. .++ .+++++|++++.+++ ..|..|.||||+|+..|
T Consensus 86 -----------~~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 86 -----------NIITADHVSPLHEACL-------GGH----------LSCVKILLKHGAQVN-GVTADWHTPLFNACVSG 136 (285)
T ss_dssp -----------CEECTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHT
T ss_pred -----------CCcCCCCCCHHHHHHH-------CCc----------HHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcC
Confidence 3588999999999999 999 999999999999987 78999999999999999
Q ss_pred CHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhc
Q 039828 160 NEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI 239 (626)
Q Consensus 160 ~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ 239 (626)
+.+++++|++.+...+ .+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.
T Consensus 137 ~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 137 SWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp CHHHHHHHHHTTCCSS---CSCTTSCHHHHHHHHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 9999999999887433 2345999999999999999999999998 67888999999999999999999999999999
Q ss_pred CCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcC
Q 039828 240 NPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS 310 (626)
Q Consensus 240 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~ 310 (626)
+++ ++ .+..|.||||+|+..|+.+++++|+++|.+++ .+|..|+||||+|+ ++.+++++|++..
T Consensus 213 ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~---~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 213 GAD-VN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQ---AKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp TCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred CCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 988 55 48899999999999999999999999886654 45999999999999 4579999999983
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=307.66 Aligned_cols=254 Identities=15% Similarity=0.089 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHH
Q 039828 51 KGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLA 130 (626)
Q Consensus 51 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~ 130 (626)
+|+||||+||..|+.++|++|++.|+++ +.+|.+|.||||+|+. .++ .+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-------~g~----------~~~v 52 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV------------NIITADHVSPLHEACL-------GGH----------LSCV 52 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS------------SCCCTTCCCHHHHHHH-------HTC----------HHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHHH-------cCC----------HHHH
Confidence 6899999999999999999999998765 3478899999999999 899 9999
Q ss_pred HHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccc
Q 039828 131 RSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL 210 (626)
Q Consensus 131 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 210 (626)
+.|++++.+++ ..|..|.||||+|+..|+.+++++|++.+...+ .+..|.||||.|+..|+.+++++|++.+ .++
T Consensus 53 ~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~ 127 (261)
T 2xai_A 53 KILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAARRGHVECVNSLIAYG-GNI 127 (261)
T ss_dssp HHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---CSCTTCCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred HHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCC
Confidence 99999999887 778899999999999999999999999877443 2345889999999999999999999887 677
Q ss_pred cccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchH
Q 039828 211 LIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNI 290 (626)
Q Consensus 211 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~ 290 (626)
+..|..|.||||+|+..|+.+++++|++.+++ ++ .+..|.||||+|+..|+.+++++|+++|++++ .+|..|+||
T Consensus 128 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~---~~d~~g~tp 202 (261)
T 2xai_A 128 DHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVARTASEELACLLMDFGADTQ---AKNAEGKRP 202 (261)
T ss_dssp TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC-TT-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCG
T ss_pred CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CC-CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCCh
Confidence 88888899999999999999999999998887 44 37788899999998899999999888776654 458888899
Q ss_pred HHHHHHcCChHHHHHHHHcCCcc----hhhcccCCCCCCCHHHHHHHhCCHHHHHHHhh
Q 039828 291 LHVAAKKGRDVSVTHILEASDLT----DKLINEMDDDGNTPLHLAALYGHYFVAVILGK 345 (626)
Q Consensus 291 Lh~A~~~~~~~i~~~Ll~~~~~~----~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~ 345 (626)
||+|+.+ .+++++|++.+... .+.++.+|..|+||+|.|.....++.++.++.
T Consensus 203 l~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 203 VELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp GGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred hhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 9988854 45788888875322 14567778888888888888877776665543
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.5e-38 Score=329.90 Aligned_cols=271 Identities=17% Similarity=0.133 Sum_probs=175.1
Q ss_pred cccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccc
Q 039828 4 TFKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQ 83 (626)
Q Consensus 4 ~~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~ 83 (626)
-..+..|.+|.||||+||..|+ .+ ++++|++.+.+ ++.+|..|.||||+||..|+.++|++|++++++.
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~---~~--~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----- 79 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQ---TD--EVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----- 79 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred CCccccCCCCCCHHHHHHHcCC---HH--HHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence 3456778899999999999999 88 99999999876 8999999999999999999999999999999854
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcC----CCCcccc----------------
Q 039828 84 IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSE----DPNASYL---------------- 143 (626)
Q Consensus 84 ~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~----~~~~~~~---------------- 143 (626)
.+.+|.||||+|+. .++ .+++++|++. +.+....
T Consensus 80 ---------~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (364)
T 3ljn_A 80 ---------SLWHGQKPIHLAVM-------ANK----------TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV 133 (364)
T ss_dssp ---------CCBTTBCHHHHHHH-------TTC----------HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEE
T ss_pred ---------cccCCCCHHHHHHH-------cCC----------HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhcccc
Confidence 34589999999999 999 9999999998 5554420
Q ss_pred cCCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchh
Q 039828 144 MNVDCKSPLYLAVESK--NEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPM 221 (626)
Q Consensus 144 ~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 221 (626)
.+..|.||||+|+..| +.+++++|++.+. +++..|..|.|||
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga------------------------------------~~~~~d~~g~t~L 177 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGA------------------------------------SPTAKDKADETPL 177 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHHHTC------------------------------------CTTCCCTTSCCHH
T ss_pred CCCCCCCHHHHHHHcCCchHHHHHHHHHcCC------------------------------------CCcccCCCCCCHH
Confidence 3444555555555555 4555555555443 3444444445555
Q ss_pred hHHhhCCCHHHHHHhhhcCCCc----ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828 222 HWAASVDHLEGVRFLYEINPDS----VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK 297 (626)
Q Consensus 222 h~Aa~~g~~~~v~~Ll~~~~~~----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~ 297 (626)
|+|+..|+.+++++|++.+++. ++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~---~~d~~g~tpL~~A~~~ 254 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVRA 254 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT---CCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHh
Confidence 5555555555555555444332 33444455555555555555555555555443332 2244555555555555
Q ss_pred CChHHHHHHHHcCCcc--------hhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcc
Q 039828 298 GRDVSVTHILEASDLT--------DKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAES 351 (626)
Q Consensus 298 ~~~~i~~~Ll~~~~~~--------~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~ 351 (626)
|+.+++++|++.+... .......+..|+|||+.|+..++.+.+..|+..+ ++.
T Consensus 255 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~-~~~ 315 (364)
T 3ljn_A 255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDE 315 (364)
T ss_dssp CCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH-HHH
T ss_pred ChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH-HHH
Confidence 5555555555544211 1122235667888888888888777777777666 443
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.2e-38 Score=326.47 Aligned_cols=280 Identities=18% Similarity=0.161 Sum_probs=222.8
Q ss_pred ccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCC
Q 039828 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT 124 (626)
Q Consensus 45 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~ 124 (626)
.+..|..|.||||+||..|+.++|++|++.|+++ +.+|..|.||||+|+. .++
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~-------~g~-------- 65 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP------------TIQNRFGCTALHLACK-------FGC-------- 65 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHH-------HCC--------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------cccCCCCCcHHHHHHH-------cCC--------
Confidence 5567889999999999999999999999998765 3478889999999998 888
Q ss_pred cHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828 125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD 204 (626)
Q Consensus 125 ~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 204 (626)
.+++++|++++++.. +.+|.||||+|+..|+.+++++|++.+.. .|..+-..........
T Consensus 66 --~~~v~~Ll~~g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~~~~~~~~~------- 125 (364)
T 3ljn_A 66 --VDTAKYLASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKE--------RGQMPESLLNECDERE------- 125 (364)
T ss_dssp --HHHHHHHHHHCCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHH--------HTCCHHHHHTCCCCCC-------
T ss_pred --HHHHHHHHHCCCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccc--------cCCCHHHHHhhcchHh-------
Confidence 999999999988544 45788999999999999999999887220 0111100000000000
Q ss_pred cCCccccccCCCCCchhhHHhhCC--CHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCC--Cc
Q 039828 205 KQPALLLIQDEQMNTPMHWAASVD--HLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH--PN 280 (626)
Q Consensus 205 ~~~~~~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~--~~ 280 (626)
......+..|..|.||||+|+..| +.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+.. ..
T Consensus 126 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 204 (364)
T 3ljn_A 126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204 (364)
T ss_dssp EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT
T ss_pred hhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc
Confidence 001224457889999999999999 99999999999988 88899999999999999999999999999876521 14
Q ss_pred ccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc--------
Q 039828 281 ELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD-------- 352 (626)
Q Consensus 281 ~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~-------- 352 (626)
+.+|..|+||||+|+.+|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|++++ ++++
T Consensus 205 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~ 279 (364)
T 3ljn_A 205 DYANKQGNSHLHWAILINWEDVAMRFVEMG----IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHN 279 (364)
T ss_dssp TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS-CHHHHHTCTTBS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcC-CchhhhcCcccC
Confidence 556899999999999999999999999998 889999999999999999999999999999987 5543
Q ss_pred ----ccccCCCCHHHHHHHhccc-cccccc
Q 039828 353 ----IINFYGQTAYDIAEQQYAK-IIPEFS 377 (626)
Q Consensus 353 ----~~n~~g~tpl~la~~~~~~-~i~~~~ 377 (626)
..+..++||++.|+..++. .+..++
T Consensus 280 ~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll 309 (364)
T 3ljn_A 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309 (364)
T ss_dssp SSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred cccccccccccccchhhhhccCHHHHHHHH
Confidence 3677899999887776643 333333
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=305.98 Aligned_cols=253 Identities=20% Similarity=0.171 Sum_probs=223.2
Q ss_pred CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME 91 (626)
Q Consensus 12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~ 91 (626)
+|+||||+||..|+ .+ ++++|++.+.+ ++.+|..|+||||+|+..|+.++|++|+++|+++ +
T Consensus 2 ~g~t~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~ 63 (261)
T 2xai_A 2 SDWSPMHEAAIHGH---QL--SLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV------------N 63 (261)
T ss_dssp --CCHHHHHHHHTC---HH--HHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT------------T
T ss_pred CCCCHHHHHHHcCC---HH--HHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------C
Confidence 69999999999999 88 99999999876 8999999999999999999999999999999865 3
Q ss_pred hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828 92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171 (626)
Q Consensus 92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (626)
.+|..|.||||+|+. .++ .++++.|+++++++. .+.+|.||||+|+..|+.+++++|++.+
T Consensus 64 ~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 124 (261)
T 2xai_A 64 GVTADWHTPLFNACV-------SGS----------WDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYG 124 (261)
T ss_dssp CCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 478999999999999 899 999999999999886 3566999999999999999999999998
Q ss_pred CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC
Q 039828 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG 251 (626)
Q Consensus 172 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 251 (626)
. +....+..|.||||.|+..|+.+++++|++.+ .+++. |..|.||||+|+..|+.+++++|++.+++ ++.+|..|
T Consensus 125 ~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g 199 (261)
T 2xai_A 125 G--NIDHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEG 199 (261)
T ss_dssp C--CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHT-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred C--CCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence 7 44556678999999999999999999999998 55664 88999999999999999999999999998 88999999
Q ss_pred ChHHHHHHhcCChHHHHHHHhccCCCC-----CcccccCCCchHHHHHHHcCChHHHHHHHH
Q 039828 252 LYPFHLASANGCVPVMGEFLEKENMPH-----PNELFNNKGQNILHVAAKKGRDVSVTHILE 308 (626)
Q Consensus 252 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~ 308 (626)
.||+|+|+.++ ++++.|++++..+. ....+|..|+|++|.|.+...++.++.++.
T Consensus 200 ~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 200 KRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp CCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred CChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 99999999655 58899999765443 234578999999999999888777766654
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.4e-37 Score=301.20 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=122.9
Q ss_pred HHhhccCCCCHHHHHHHhhhhhhccCCCCC---CCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q 039828 90 MEMKNVRGNTALHEALNALQDAKKDKNKPK---EDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEY 166 (626)
Q Consensus 90 l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (626)
++.+|.+|.||||+|+. .|+... ........++++.|+++++++....|..|.||||+|+..|+.+++++
T Consensus 3 vn~~d~~g~tpL~~A~~-------~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 75 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASC-------SGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR 75 (253)
T ss_dssp --------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCcHHHHHHh-------ccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHH
Confidence 56789999999999998 552000 00000016667777777766665556667777777777777777777
Q ss_pred HHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccc
Q 039828 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ 246 (626)
Q Consensus 167 Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~ 246 (626)
|++.+.. ....+..|.||||.|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++.+++ ++.
T Consensus 76 Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~ 152 (253)
T 1yyh_A 76 LLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNA 152 (253)
T ss_dssp HHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTC
T ss_pred HHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCC
Confidence 7776552 2334445666666666666666666666666545666666666666666666666666666666655 555
Q ss_pred cCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCC
Q 039828 247 KNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNT 326 (626)
Q Consensus 247 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~T 326 (626)
.|..|.||||+|+..|+.+++++|+++|.+++. +|..|+||||+|+.+|+.+++++|++.| ++++.+|..|+|
T Consensus 153 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---~~~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t 225 (253)
T 1yyh_A 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKVLLDHF----ANRDITDHMDRL 225 (253)
T ss_dssp BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCCHHHHHHHCCCHHHHHHHHHcC----CCccccccCCCC
Confidence 666666666666666666666666665544332 3566666666666666666666666665 556666666666
Q ss_pred HHHHHHHhCCHHHHHHHhhCC
Q 039828 327 PLHLAALYGHYFVAVILGKDG 347 (626)
Q Consensus 327 pLhlA~~~~~~~iv~~Ll~~g 347 (626)
|||+|+..|+.+++++|....
T Consensus 226 pl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 226 PRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 666666666666666665443
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-36 Score=299.51 Aligned_cols=229 Identities=20% Similarity=0.209 Sum_probs=148.7
Q ss_pred cccccCCCCcHHHHHHhcC-------------CCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 039828 6 KTITSPSGNTLLHIAAAGS-------------IRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILV 72 (626)
Q Consensus 6 ~~~~~~~g~t~LH~Aa~~g-------------~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll 72 (626)
.+.+|.+|+||||+|+..| + .+ ++++|++.+++..+..|..|+||||+|+..|+.++|++|+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~---~~--~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 77 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDA---PA--VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL 77 (253)
T ss_dssp ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCC---hH--HHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 4678999999999999987 5 67 8999998888766667888999999999999999999999
Q ss_pred HccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHH
Q 039828 73 DCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPL 152 (626)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL 152 (626)
++|+++ +.+|..|.||||+|+. .++ .+++++|+++++......+..|.|||
T Consensus 78 ~~g~~~------------~~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~~~~~~~~~~~~g~t~L 128 (253)
T 1yyh_A 78 EASADA------------NIQDNMGRTPLHAAVS-------ADA----------QGVFQILIRNRATDLDARMHDGTTPL 128 (253)
T ss_dssp HTTCCT------------TCCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHSTTSCTTCCCTTCCCHH
T ss_pred HcCCCC------------CCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCccccCCCCCcHH
Confidence 888765 3467788888888888 778 88888888887733336777888888
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHH
Q 039828 153 YLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEG 232 (626)
Q Consensus 153 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~ 232 (626)
|+|+..|+.+++++|++.+.. ....+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~ 205 (253)
T 1yyh_A 129 ILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYET 205 (253)
T ss_dssp HHHHHHTCSSHHHHHHHTTCC--TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHcChHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHH
Confidence 888888888888888887663 3344556777777777777777777777776 5666777777777777777777777
Q ss_pred HHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHh
Q 039828 233 VRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLE 272 (626)
Q Consensus 233 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 272 (626)
+++|++++++ .+.+|..|.||+|+|+.+|+.+++++|..
T Consensus 206 v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 206 AKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp HHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 7777777776 66677777777777777777777777776
No 19
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.2e-36 Score=305.04 Aligned_cols=270 Identities=16% Similarity=0.105 Sum_probs=183.8
Q ss_pred ccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCC
Q 039828 45 ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVT 124 (626)
Q Consensus 45 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~ 124 (626)
++.+|.+|+||||+||..|+.++|++|++.+++. ..++.+|..|.||||+|+. .++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---------~~~~~~~~~g~t~L~~A~~-------~g~-------- 57 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---------EYLDLQNDLGQTALHLAAI-------LGE-------- 57 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---------GGGGCCCTTSCCHHHHHHH-------HTC--------
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---------ccccccCCCCCCHHHHHHH-------cCC--------
Confidence 4667888888888888888888888888887652 1245678888888888888 888
Q ss_pred cHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828 125 SLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD 204 (626)
Q Consensus 125 ~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 204 (626)
.+++++|++++++++ ..+..|.||||+|+..|+.+++++|++.++........ +. +.
T Consensus 58 --~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~----------------~~ 114 (282)
T 1oy3_D 58 --ASTVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TY----------------LT 114 (282)
T ss_dssp --HHHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------
T ss_pred --HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HH----------------hh
Confidence 888888888888887 67888899999999999999999998876632211100 00 00
Q ss_pred cCCccccccCCCCCchhhHHhhCCCHHHH-HHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccc
Q 039828 205 KQPALLLIQDEQMNTPMHWAASVDHLEGV-RFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELF 283 (626)
Q Consensus 205 ~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v-~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 283 (626)
. ........+.++++.++..+..... ..+...+.+ .+..+..|.||||+|+..|+.+++++|+++|.+++..+
T Consensus 115 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-- 188 (282)
T 1oy3_D 115 Q---SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE-- 188 (282)
T ss_dssp --------------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC--
T ss_pred c---ccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCC--
Confidence 0 0112234556777777766554433 344444444 77889999999999999999999999999886665441
Q ss_pred cCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828 284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD 363 (626)
Q Consensus 284 d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~ 363 (626)
+..|+||||+|+.+|+.+++++|++.| ++++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||++
T Consensus 189 ~~~g~tpL~~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~ 263 (282)
T 1oy3_D 189 PTCGRTPLHLAVEAQAASVLELLLKAG----ADPTARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCS 263 (282)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC--------
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHHcC----CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCccccccc
Confidence 245999999999999999999999998 889999999999999999999999999999999 999999999999999
Q ss_pred HHHHhcccc
Q 039828 364 IAEQQYAKI 372 (626)
Q Consensus 364 la~~~~~~~ 372 (626)
+|......+
T Consensus 264 ~a~~~~~~~ 272 (282)
T 1oy3_D 264 SSGSDSDSD 272 (282)
T ss_dssp ---------
T ss_pred ccCCccccc
Confidence 999875543
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=6.4e-36 Score=292.54 Aligned_cols=229 Identities=21% Similarity=0.231 Sum_probs=143.9
Q ss_pred cccccCCCCcHHHHHHhcCCCccccHHHHHHHHh---hCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCcc
Q 039828 6 KTITSPSGNTLLHIAAAGSIRNHENMAMATTLAR---KYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSS 82 (626)
Q Consensus 6 ~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~---~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~ 82 (626)
.+.+|.+|+||||+||..|+ .+ ++++|++ ..+..++.+|..|.||||+|+..|+.+++++|++.|+++.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--- 73 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGN---LP--AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM--- 73 (241)
T ss_dssp -----CTTCCHHHHHHHTTC---HH--HHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---
T ss_pred ccccCCCCCcHHHHHHHcCC---HH--HHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc---
Confidence 45677788888888888887 77 7777776 2344477777788888888888888888888887776542
Q ss_pred chhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCC----CcccccCCCCCcHHHHHHHc
Q 039828 83 QIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDP----NASYLMNVDCKSPLYLAVES 158 (626)
Q Consensus 83 ~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~ 158 (626)
..|..|.||||+|+. .++ .++++.|++.++ ++. ..+..|.||||+|+..
T Consensus 74 ---------~~~~~g~t~l~~A~~-------~~~----------~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~ 126 (241)
T 1k1a_A 74 ---------ALDRHGQTAAHLACE-------HRS----------PTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNT 126 (241)
T ss_dssp ---------CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHH
T ss_pred ---------ccCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHc
Confidence 356667777777777 666 777777777665 333 4556666666666666
Q ss_pred CCHHHHHHHHHhCCCCCccccc-cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhh
Q 039828 159 KNEDILEYILEALPVNDDCDAK-LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 237 (626)
Q Consensus 159 g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll 237 (626)
|+.+++++|++.+... ...+ ..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|+
T Consensus 127 ~~~~~~~~Ll~~g~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 203 (241)
T 1k1a_A 127 ECQETVQLLLERGADI--DAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLV 203 (241)
T ss_dssp TCHHHHHHHHHTTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCc--ccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 6666666666665532 2222 34666666666666666666666655 455555666666666666666666666666
Q ss_pred hcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhc
Q 039828 238 EINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK 273 (626)
Q Consensus 238 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 273 (626)
+++++ ++.+|..|.||||+|+..|+.++++.|.++
T Consensus 204 ~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 204 RSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp HTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred hcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 66555 555566666666666666666666655543
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.9e-36 Score=299.03 Aligned_cols=227 Identities=21% Similarity=0.168 Sum_probs=159.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC-ccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchh
Q 039828 143 LMNVDCKSPLYLAVESKNEDILEYILEALPVND-DCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPM 221 (626)
Q Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 221 (626)
..|.+|.||||+|+..|+.+++++|++.++... ....+..|.||||+|+..|+.+++++|++.+ ..++.+|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL 82 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTAL 82 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHH
Confidence 456677777777777777777777777655322 3344556777777777777777777777776 56667777777777
Q ss_pred hHHhhCCCHHHHHHhhhcCCCc------------ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCch
Q 039828 222 HWAASVDHLEGVRFLYEINPDS------------VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN 289 (626)
Q Consensus 222 h~Aa~~g~~~~v~~Ll~~~~~~------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t 289 (626)
|+|+..|+.+++++|++.+++. .......+.++++.++..+.......++. ......+.++..|+|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE--DWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CC--CGGGGTTCCCTTSCC
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhh--hhhhcCCCcCCCCcC
Confidence 7777777777777777765441 12334567888888887766555544443 223344566899999
Q ss_pred HHHHHHHcCChHHHHHHHHcCCcchhhcccCCCC-CCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828 290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD-GNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368 (626)
Q Consensus 290 ~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~-G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~ 368 (626)
|||+|+.+|+.+++++|++.| ++++.++.. |+||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~ 235 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAG----ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHc
Confidence 999999999999999999998 888888865 999999999999999999999999 99999999999999999999
Q ss_pred ccccccccc
Q 039828 369 YAKIIPEFS 377 (626)
Q Consensus 369 ~~~~i~~~~ 377 (626)
++.++++++
T Consensus 236 ~~~~~v~~L 244 (282)
T 1oy3_D 236 PNPILARLL 244 (282)
T ss_dssp SCHHHHHHH
T ss_pred CCcHHHHHH
Confidence 999888875
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.4e-35 Score=283.63 Aligned_cols=226 Identities=19% Similarity=0.192 Sum_probs=170.1
Q ss_pred cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH
Q 039828 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL 89 (626)
Q Consensus 10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 89 (626)
+..++++||.|+..|+ .+ .++++++.++..++.+|..|+||||+|+..|+.++|++|++.+++++
T Consensus 3 ~~~~~~~l~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------- 67 (231)
T 3aji_A 3 GCVSNIMICNLAYSGK---LD--ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---------- 67 (231)
T ss_dssp CCCSSSHHHHHHHHTC---HH--HHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC----------
T ss_pred CccccchHHHHHHhCC---HH--HHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC----------
Confidence 4568899999999999 88 99999998888788889999999999999999999999999887653
Q ss_pred HHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828 90 MEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169 (626)
Q Consensus 90 l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (626)
.+|..|.||||+|+. .++ .+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++
T Consensus 68 --~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 68 --DKDDAGWSPLHIAAS-------AGX----------DEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp --CCCTTSCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred --CcCCCCCCHHHHHHH-------cCH----------HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 367788888888888 778 888888888888776 667778888888888888888888887
Q ss_pred hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCC
Q 039828 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNE 249 (626)
Q Consensus 170 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 249 (626)
.+.. ....+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|.
T Consensus 128 ~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~ 203 (231)
T 3aji_A 128 GGAN--PDAKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENK 203 (231)
T ss_dssp TTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCT
T ss_pred cCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCC
Confidence 7653 3334445667777777777777777777665 55566666666666666666666666666666665 556666
Q ss_pred CCChHHHHHHhcCChHHHHHHHhcc
Q 039828 250 EGLYPFHLASANGCVPVMGEFLEKE 274 (626)
Q Consensus 250 ~g~tpLh~A~~~g~~~~v~~Ll~~g 274 (626)
.|.||+|+|+..++.+++++|.++|
T Consensus 204 ~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 204 EEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp TSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhHHHHHHHHHcccc
Confidence 6666666666666666666666543
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8.1e-35 Score=284.10 Aligned_cols=218 Identities=23% Similarity=0.243 Sum_probs=128.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhh
Q 039828 143 LMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222 (626)
Q Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 222 (626)
..|.+|.||||+|+..|+.+++++|++.+.. ....+..|.||||.|+..|+.+++++|++.+ ..++..|..|.||||
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGSTCLH 82 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCCCTTSCCHHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHHH
Confidence 3455555666666666666666666655442 2233344556666666666666666666555 445555566666666
Q ss_pred HHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHH
Q 039828 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS 302 (626)
Q Consensus 223 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i 302 (626)
+|+..|+.+++++|++.++...+..+..|.||||.|+..|+.+++++|+++|.+++ .++..|+||||+|+..|+.++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN---IRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---ccCCCCCCHHHHHHHCCCHHH
Confidence 66666666666666666533355556666666666666666666666666554332 235556666666666666666
Q ss_pred HHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccc
Q 039828 303 VTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAK 371 (626)
Q Consensus 303 ~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~ 371 (626)
+++|++.+ .+++.+|..|+||||+|+..++.+++++|+++| ++++.+|.+|+||+|+|...++.
T Consensus 160 ~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 160 AEILLAAK----CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp HHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHH
T ss_pred HHHHHHcC----CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHH
Confidence 66666665 555666666666666666666666666666666 66666666666666666655543
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.3e-34 Score=282.72 Aligned_cols=220 Identities=21% Similarity=0.210 Sum_probs=105.5
Q ss_pred ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhh
Q 039828 7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDV 86 (626)
Q Consensus 7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~ 86 (626)
+..|.+|+||||+||..|+ .+ ++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+++.
T Consensus 5 ~~~~~~g~t~L~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------- 71 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGH---VD--ICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD------- 71 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-------
T ss_pred ccccCCCCCHHHHHHHcCc---HH--HHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-------
Confidence 3445555555555555555 55 55555555443 45555555555555555555555555555554331
Q ss_pred hHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHH
Q 039828 87 KFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEY 166 (626)
Q Consensus 87 ~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (626)
.++..|.||||+|+. .++ .+++++|+++++......+..|.||||+|+..|+.+++++
T Consensus 72 -----~~~~~g~t~L~~A~~-------~~~----------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 129 (237)
T 3b7b_A 72 -----PKDAEGSTCLHLAAK-------KGH----------YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129 (237)
T ss_dssp -----CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred -----CCCCCCCcHHHHHHH-------cCC----------HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 244445555555555 455 5555555555422222444445555555555555555555
Q ss_pred HHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccc
Q 039828 167 ILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ 246 (626)
Q Consensus 167 Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~ 246 (626)
|++.+.. ....+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++++++ ++.
T Consensus 130 Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~ 205 (237)
T 3b7b_A 130 LLSKGSD--INIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTL 205 (237)
T ss_dssp HHHTTCC--TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTC
T ss_pred HHHCCCC--CCccCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCc
Confidence 5554432 2222333444444444444444444444444 33344444444444444444444444444444443 334
Q ss_pred cCCCCChHHHHHHhcCChH
Q 039828 247 KNEEGLYPFHLASANGCVP 265 (626)
Q Consensus 247 ~d~~g~tpLh~A~~~g~~~ 265 (626)
+|..|.||||+|+.+|+.+
T Consensus 206 ~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 206 KNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp CCTTSCCHHHHSCTTCHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 4444444444444444443
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5e-35 Score=286.18 Aligned_cols=223 Identities=19% Similarity=0.184 Sum_probs=119.8
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHH----hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCc
Q 039828 144 MNVDCKSPLYLAVESKNEDILEYILE----ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNT 219 (626)
Q Consensus 144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 219 (626)
+|.+|.||||+|+..|+.+++++|++ .+. +....+..|.||||.|+..|+.+++++|++.+ ..++..|..|.|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCC
Confidence 34455555555555555555555554 222 22233334555555555555555555555554 444455555555
Q ss_pred hhhHHhhCCCHHHHHHhhhcCCC---cccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCccccc-CCCchHHHHHH
Q 039828 220 PMHWAASVDHLEGVRFLYEINPD---SVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFN-NKGQNILHVAA 295 (626)
Q Consensus 220 pLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~Lh~A~ 295 (626)
|||+|+..|+.+++++|++.++. ..+..|..|.||||.|+..|+.+++++|+++|.+++.. + ..|+||||+|+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~---~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV---DIKSGRSPLIHAV 158 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC---CTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---cccCCCcHHHHHH
Confidence 55555555555555555555441 14445555556666666666666666665544333322 3 45556666666
Q ss_pred HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccc
Q 039828 296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE 375 (626)
Q Consensus 296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~ 375 (626)
.+++.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|.+.++.++.+
T Consensus 159 ~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~ 233 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHG----ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR 233 (241)
T ss_dssp HTTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred HcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence 666666666666555 555555556666666666666666666666555 566666666666666665555555554
Q ss_pred cc
Q 039828 376 FS 377 (626)
Q Consensus 376 ~~ 377 (626)
.+
T Consensus 234 ~l 235 (241)
T 1k1a_A 234 GK 235 (241)
T ss_dssp C-
T ss_pred hh
Confidence 43
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.6e-34 Score=279.28 Aligned_cols=219 Identities=22% Similarity=0.177 Sum_probs=128.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhC
Q 039828 148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV 227 (626)
Q Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 227 (626)
+.+|||.|+..|+.+.++++++.++.. ....+..|.||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCcCCCCCCHHHHHHHc
Confidence 455566666666666666555554311 2233445556666666666666666666554 44555556666666666666
Q ss_pred CCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHH
Q 039828 228 DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307 (626)
Q Consensus 228 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll 307 (626)
|+.+++++|++.+++ .+..|..|.||||.|+..|+.+++++|+++|.+++. +|..|+||||+|+.+|+.+++++|+
T Consensus 84 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 84 GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 666666666666555 455556666666666666666666666665543332 3555666666666666666666666
Q ss_pred HcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828 308 EASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS 377 (626)
Q Consensus 308 ~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~ 377 (626)
+.+ .+++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|+||+++|...++.++.+++
T Consensus 160 ~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 160 FYK----ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HTT----CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred hcC----CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 655 555666666666666666666666666666665 66666666666666666665555555544
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3e-34 Score=278.21 Aligned_cols=212 Identities=19% Similarity=0.179 Sum_probs=145.8
Q ss_pred CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM 92 (626)
Q Consensus 13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~ 92 (626)
|+||||+||..|+ .+ ++++|++.++...+.+|..|+||||+|+..|+.+++++|++.+++.. ++.
T Consensus 2 g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----------~~~ 66 (228)
T 2dzn_A 2 SNYPLHQACMENE---FF--KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN----------LDD 66 (228)
T ss_dssp -CCHHHHHHHTTC---HH--HHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC----------GGG
T ss_pred CccHHHHHHHhCC---HH--HHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc----------ccc
Confidence 6788888888888 77 88888888887777788888888888888888888888888875431 122
Q ss_pred -hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828 93 -KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSED--PNASYLMNVDCKSPLYLAVESKNEDILEYILE 169 (626)
Q Consensus 93 -~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (626)
.+..|.||||+|+. .++ .++++.|++++ +++. ..+..|.||||+|+..|+.+++++|++
T Consensus 67 ~~~~~g~t~L~~A~~-------~~~----------~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 67 YPDDSGWTPFHIACS-------VGN----------LEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp CCCTTSCCHHHHHHH-------HCC----------HHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 56677777777777 677 77777777776 5554 556667777777777777777777777
Q ss_pred hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhh-hcCCCcccccC
Q 039828 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY-EINPDSVLQKN 248 (626)
Q Consensus 170 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll-~~~~~~~~~~d 248 (626)
.+.. ....+..|.||||.|+..|+.+++++|++.++.+++.+|..|.||||+|+..|+.+++++|+ +.+++ ++..|
T Consensus 129 ~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~ 205 (228)
T 2dzn_A 129 NGAS--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVD 205 (228)
T ss_dssp TTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBC
T ss_pred cCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccC
Confidence 6552 33344456666666666666666666666665555666666666666666666666666666 55555 55566
Q ss_pred CCCChHHHHHHh
Q 039828 249 EEGLYPFHLASA 260 (626)
Q Consensus 249 ~~g~tpLh~A~~ 260 (626)
..|.||+|+|+.
T Consensus 206 ~~g~t~l~~A~~ 217 (228)
T 2dzn_A 206 NKGAKAEDVALN 217 (228)
T ss_dssp TTSCBGGGGCSS
T ss_pred CCCCcHHHHHHH
Confidence 666666666644
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9e-34 Score=274.83 Aligned_cols=211 Identities=27% Similarity=0.281 Sum_probs=110.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC--CccccccCCCCCchhhHHh
Q 039828 148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ--PALLLIQDEQMNTPMHWAA 225 (626)
Q Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa 225 (626)
|.||||+|+..|+.+++++|++.++.. ....+..|.||||.|+..|+.+++++|++.+ +......|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 344555555555555555555443311 1113334455555555555555555555444 1111114455555555555
Q ss_pred hCCCHHHHHHhhhcC--CCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHH
Q 039828 226 SVDHLEGVRFLYEIN--PDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSV 303 (626)
Q Consensus 226 ~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~ 303 (626)
..|+.+++++|++.+ ++ .+..+..|.||||.|+..|+.+++++|+++|.+++ .+|..|+||||+|+..|+.+++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v 156 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR---IKDKFNQIPLHRAASVGSLKLI 156 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc---ccCCCCCCHHHHHHHcCCHHHH
Confidence 555555555555554 33 44455555555555555555555555555543332 2355556666666666666666
Q ss_pred HHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh-hCCCCcccccccCCCCHHHHHHH
Q 039828 304 THILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG-KDGRAESDIINFYGQTAYDIAEQ 367 (626)
Q Consensus 304 ~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll-~~g~~d~~~~n~~g~tpl~la~~ 367 (626)
++|++.+ ..++|.+|..|+||||+|+..|+.+++++|+ +.| ++++.+|.+|+||+|+|.+
T Consensus 157 ~~Ll~~g---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 157 ELLCGLG---KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HHHHTTT---CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-CCSCCBCTTSCBGGGGCSS
T ss_pred HHHHhcC---cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-CCCCccCCCCCcHHHHHHH
Confidence 6665554 2445555666666666666666666666666 455 6666666666666666543
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=288.58 Aligned_cols=225 Identities=17% Similarity=0.188 Sum_probs=133.3
Q ss_pred ccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcH
Q 039828 47 MQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSL 126 (626)
Q Consensus 47 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~ 126 (626)
.+|..+.+||+.||..|+.++|++|++.+++... +....++..+..|.||||.|+. .++ .
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~----~~~~~~~~~~~~~~t~L~~a~~-------~~~---------~ 65 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLE----DAEDTVSAADPEFCHPLCQCPK-------CAP---------A 65 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccc----cccccccccCccCCCHHHHHHH-------hCC---------H
Confidence 4677888999999999999999999998875421 1122345567777788887776 333 0
Q ss_pred HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ 206 (626)
Q Consensus 127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 206 (626)
..+++.|++.|.+++ ..|.+|+||||+|+..|+.+++++|++.++
T Consensus 66 ~~~v~~Ll~~Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a---------------------------------- 110 (269)
T 4b93_B 66 QKRLAKVPASGLGVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGA---------------------------------- 110 (269)
T ss_dssp ---------CCCCTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCC----------------------------------
Confidence 346667777777765 566667777777777777666666666544
Q ss_pred CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC
Q 039828 207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK 286 (626)
Q Consensus 207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~ 286 (626)
+++..+..|.||+|+|+..++.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .++..
T Consensus 111 --~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn---~~~~~ 184 (269)
T 4b93_B 111 --NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN---ASNNK 184 (269)
T ss_dssp --CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT---CBCTT
T ss_pred --CcCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC---ccccC
Confidence 2334455566666666666666666666666665 56667777777777777777777777777665443 34677
Q ss_pred CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC
Q 039828 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH 336 (626)
Q Consensus 287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~ 336 (626)
|+||||+|+.+|+.+++++|++.| +++|.+|.+|+||||+|+++++
T Consensus 185 g~t~Lh~A~~~g~~~~v~~Ll~~G----ad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 185 GNTALHEAVIEKHVFVVELLLLHG----ASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCSGGGSCTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHhCCc
Confidence 777777777777777777777776 6777778888888888776654
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=287.93 Aligned_cols=217 Identities=24% Similarity=0.254 Sum_probs=172.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC------ccccccCCCCHHHHHHHhCCHH-HHHHHHhcCCccccccCC
Q 039828 143 LMNVDCKSPLYLAVESKNEDILEYILEALPVND------DCDAKLEGKSPVKVAIELQKLG-LLKMMHDKQPALLLIQDE 215 (626)
Q Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~d~ 215 (626)
.+|..+.+||+.|+..|+.++|++|++.++... ....+..+.|||+.|+..+..+ +++.|++.+ .+++..|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G-advn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG-LGVNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC-CCTTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC-CCCCCcCC
Confidence 356678899999999999999999999876321 2334567899999999887754 788899888 78999999
Q ss_pred CCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828 216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA 295 (626)
Q Consensus 216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~ 295 (626)
+|+||||+|+..|+.+++++|++.+++ ++..+..|.||+|.|+..++.++++.|++.|.+++ .+|..|+||||+|+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n---~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN---KKDLSGNTPLIYAC 160 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC---CCCTTCCCHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCC---CCCCCCCCHHHHHH
Confidence 999999999999999999999999998 88899999999999999999999999999886654 45899999999999
Q ss_pred HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhc
Q 039828 296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQY 369 (626)
Q Consensus 296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~ 369 (626)
.+|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++| +|++.+|.+|+||||+|++.+
T Consensus 161 ~~g~~~~v~~Ll~~g----advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 161 SGGHHELVALLLQHG----ASINASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HTTCGGGHHHHHHTT----CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred HCCCHHHHHHHHHCC----CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence 999999999999998 889999999999999999999999999999999 999999999999999997654
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-34 Score=289.13 Aligned_cols=238 Identities=21% Similarity=0.224 Sum_probs=143.8
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHH
Q 039828 49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDS 128 (626)
Q Consensus 49 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~ 128 (626)
+..|.||||.||..|+.++|++|++.|+++ +..|..|.||||+|+. .++ .+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-------~g~----------~~ 87 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADI------------NYANVDGLTALHQACI-------DDN----------VD 87 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCT------------TCBCTTCCBHHHHHHH-------TTC----------HH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCC------------cccCCCCCCHHHHHHH-------cCC----------HH
Confidence 446778888888888888888888887754 3367778888888887 777 78
Q ss_pred HHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc
Q 039828 129 LARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208 (626)
Q Consensus 129 i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 208 (626)
++++|++++++++ ..|..|.||||+|+..|+.+++++|++++.. ....+..|.||||.|+..++.++++.++.....
T Consensus 88 ~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~ 164 (299)
T 1s70_B 88 MVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAH--VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164 (299)
T ss_dssp HHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence 8888888877776 5677777777777777777777777777653 333445567777777777777776666655433
Q ss_pred cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc
Q 039828 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ 288 (626)
Q Consensus 209 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~ 288 (626)
.++..+..+.++++ ..+..++..+.......+..|.||||+|+..|+.+++++|+++|.+++ .+|..|+
T Consensus 165 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~---~~d~~g~ 233 (299)
T 1s70_B 165 DIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN---IKDYDGW 233 (299)
T ss_dssp CHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---CCCTTCC
T ss_pred CchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC---CcCCCCC
Confidence 33332222222222 122333333333333444455555555555555555555555443332 2345555
Q ss_pred hHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHH
Q 039828 289 NILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333 (626)
Q Consensus 289 t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~ 333 (626)
||||+|+.+|+.+++++|++.| ++++.+|..|+||||+|+.
T Consensus 234 tpL~~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 234 TPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTTTSCCS
T ss_pred cHHHHHHhcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHH
Confidence 5555555555555555555554 4455555555555555543
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.3e-33 Score=269.16 Aligned_cols=213 Identities=17% Similarity=0.165 Sum_probs=197.1
Q ss_pred HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ 206 (626)
Q Consensus 127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 206 (626)
.+++++|+++++++....|..|.||||+|+..|+.+++++|++.+.. ....+..|.||||.|+..|+.+++++|++.+
T Consensus 4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 67889999999999877899999999999999999999999999774 4456678999999999999999999999999
Q ss_pred CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC
Q 039828 207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK 286 (626)
Q Consensus 207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~ 286 (626)
+..++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++ .+|..
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~ 157 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNR 157 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTT
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CcCCC
Confidence 778899999999999999999999999999999988 88899999999999999999999999999876554 45889
Q ss_pred CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE 350 (626)
Q Consensus 287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d 350 (626)
|+||||+|+.+++.+++++|++.| ++++.+|..|.||||+|+..++.+++++|+++| +.
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g-~~ 216 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHF----ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN-LV 216 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CS
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcC----CCCccccccCCCHHHHHHHhcchHHHHHHHHcC-CC
Confidence 999999999999999999999998 788999999999999999999999999999998 43
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-34 Score=291.91 Aligned_cols=272 Identities=19% Similarity=0.194 Sum_probs=222.1
Q ss_pred HHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCC
Q 039828 58 VAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSED 137 (626)
Q Consensus 58 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~ 137 (626)
.++..++.+.++.++............. .....+..|.||||.|+. .|+ .++++.|++++
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~t~l~~A~~-------~g~----------~~~v~~Ll~~g 63 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKR---KKTKVKFDDGAVFLAACS-------SGD----------TEEVLRLLERG 63 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCC---SCCCCEECHHHHHHHHHH-------HTC----------HHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHccccccccccccC---cccccccCCccHHHHHHH-------cCC----------HHHHHHHHHcC
Confidence 4677778888888887665442211110 111245678899999999 999 99999999999
Q ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 039828 138 PNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQM 217 (626)
Q Consensus 138 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 217 (626)
++++ ..|..|.||||+|+..|+.+++++|++.+.. ....+..|.||||+|+..|+.+++++|++.+ .+++..|..|
T Consensus 64 ~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g 139 (299)
T 1s70_B 64 ADIN-YANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEG 139 (299)
T ss_dssp CCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTS
T ss_pred CCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCC
Confidence 9987 6789999999999999999999999999874 4455668999999999999999999999998 7788899999
Q ss_pred CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK 297 (626)
Q Consensus 218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~ 297 (626)
.||||+|+..++.++++.++.......+..+..+.++++. .+..++..+.... ...+..|.||||+|+.+
T Consensus 140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~--~~~~~~g~t~L~~A~~~ 209 (299)
T 1s70_B 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHIND--VRHAKSGGTALHVAAAK 209 (299)
T ss_dssp CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCC--CCCTTTCCCHHHHHHHH
T ss_pred CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcch--hhhcCCCCCHHHHHHHC
Confidence 9999999999999999988876444344333333344432 3445565443332 33578899999999999
Q ss_pred CChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828 298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368 (626)
Q Consensus 298 ~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~ 368 (626)
|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|.+.
T Consensus 210 g~~~~v~~Ll~~g----~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 210 GYTEVLKLLIQAR----YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp TCHHHHHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSG
T ss_pred CcHHHHHHHHHcC----CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHH
Confidence 9999999999998 889999999999999999999999999999999 99999999999999999653
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=269.01 Aligned_cols=231 Identities=17% Similarity=0.143 Sum_probs=200.5
Q ss_pred hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828 92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171 (626)
Q Consensus 92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (626)
..|..|.||||.|+. .++ .++++.|++.+.++. ..+..|.||||+|+..|+.+++++|++.+
T Consensus 4 ~~d~~~~~~l~~A~~-------~g~----------~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQ-------YGI----------YERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp CCSCGGGCCHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccccchHHHHHHH-------cCC----------hHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 367889999999999 999 999999999998887 67889999999999999999999999987
Q ss_pred CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC
Q 039828 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG 251 (626)
Q Consensus 172 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 251 (626)
+.... ..+..|.||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+..|+.+++++|++.+++ ++..+..|
T Consensus 66 ~~~~~-~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g 142 (240)
T 3eu9_A 66 AIVDQ-LGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNG 142 (240)
T ss_dssp CCTTC-CBTTTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred Ccchh-hcCCcCCChhHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCC
Confidence 74332 23345899999999999999999999987 67788899999999999999999999999999887 77889999
Q ss_pred ChHHHHHHhcCC-hHHHHHHHhccCCCCCcccccC-CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHH
Q 039828 252 LYPFHLASANGC-VPVMGEFLEKENMPHPNELFNN-KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLH 329 (626)
Q Consensus 252 ~tpLh~A~~~g~-~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLh 329 (626)
.||||.|+..++ .+++++|++.|.+++.. +. .|+||||+|+.+++.+++++|++.| ++++.+|..|+||||
T Consensus 143 ~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~ 215 (240)
T 3eu9_A 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLG---DKYHKNTALHWAVLAGNTTVISLLLEAG----ANVDAQNIKGESALD 215 (240)
T ss_dssp CCHHHHHHHHCCSSTTHHHHHHTTCCTTCC---CTTTCCCHHHHHHHHTCHHHHHHHHHHT----CCTTCBCTTSCBHHH
T ss_pred CcHHHHHHHhCChHHHHHHHHhcCCCcchh---hccCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHH
Confidence 999999996665 88999999977555443 44 8999999999999999999999998 888999999999999
Q ss_pred HHHHhCCHHHHHHHhhCCCCcc
Q 039828 330 LAALYGHYFVAVILGKDGRAES 351 (626)
Q Consensus 330 lA~~~~~~~iv~~Ll~~g~~d~ 351 (626)
+|+..++.+++++|++.+ .+.
T Consensus 216 ~A~~~~~~~~v~~L~~~~-~~~ 236 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEAR-QAK 236 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC----
T ss_pred HHHHcCcHHHHHHHHHhh-hcc
Confidence 999999999999999988 444
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=268.10 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=128.5
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHH
Q 039828 48 QNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLD 127 (626)
Q Consensus 48 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~ 127 (626)
.|..|.||||.|+..|+.+++++|++.|+++ +.++..|.||||+|+. .++ .
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-------~~~----------~ 55 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDV------------RQPDKENVTLLHWAAI-------NNR----------I 55 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHH-------TTC----------H
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCc------------CCCCCCCCCHHHHHHH-------hCC----------H
Confidence 3444445555555555555555555544432 1234445555555554 444 5
Q ss_pred HHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCC
Q 039828 128 SLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQP 207 (626)
Q Consensus 128 ~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 207 (626)
+++++|++++++.....+..|.||||+|+..|+.+++++|++.+.. ....+..|.||||.|+..|+.+++++|++.+
T Consensus 56 ~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~- 132 (240)
T 3eu9_A 56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD--PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG- 132 (240)
T ss_dssp HHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-
Confidence 5555555555444434444455555555555566666666655442 2233344556666666666666666666655
Q ss_pred ccccccCCCCCchhhHHhhCCC-HHHHHHhhhcCCCcccccCC-CCChHHHHHHhcCChHHHHHHHhccCCCCCcccccC
Q 039828 208 ALLLIQDEQMNTPMHWAASVDH-LEGVRFLYEINPDSVLQKNE-EGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNN 285 (626)
Q Consensus 208 ~~~~~~d~~g~tpLh~Aa~~g~-~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~ 285 (626)
..++..|..|.||||+|+..++ .+++++|++.+.+ .+..+. .|.||||+|+..|+.+++++|+++|.+++ .+|.
T Consensus 133 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~ 208 (240)
T 3eu9_A 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD---AQNI 208 (240)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT---CBCT
T ss_pred CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CcCC
Confidence 4455566666666666664444 5666666666666 444443 66677777777777777777776654443 3366
Q ss_pred CCchHHHHHHHcCChHHHHHHHHcC
Q 039828 286 KGQNILHVAAKKGRDVSVTHILEAS 310 (626)
Q Consensus 286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~ 310 (626)
.|+||||+|+.+++.+++++|++.+
T Consensus 209 ~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 209 KGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 6677777777777777777776665
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.2e-33 Score=279.94 Aligned_cols=235 Identities=15% Similarity=0.106 Sum_probs=148.9
Q ss_pred HHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhh
Q 039828 33 MATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAK 112 (626)
Q Consensus 33 ~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~ 112 (626)
+.++|.+. .++.+|..|+||||+|+..|+.++|++|++.|++++. . +|.||||+|+.
T Consensus 15 v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~--~g~t~L~~A~~------ 71 (285)
T 3kea_A 15 LKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL------------L--ENEFPLHQAAT------ 71 (285)
T ss_dssp HHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC------------C--TTCCHHHHHTT------
T ss_pred HHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------------C--CCCCHHHHHHH------
Confidence 55555543 3678888888999999998998888888888775421 2 36667766666
Q ss_pred ccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHH
Q 039828 113 KDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIE 192 (626)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~ 192 (626)
.++ .+++++|++++++++ ..|..|.||||+|+..|+.+++++|++++
T Consensus 72 -~g~----------~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--------------------- 118 (285)
T 3kea_A 72 -LED----------TKIVKILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKN--------------------- 118 (285)
T ss_dssp -SSS----------CHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHC---------------------
T ss_pred -cCC----------HHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcC---------------------
Confidence 666 666666666666655 44555555555555555555555555553
Q ss_pred hCCHHHHHHHHhcCCccccccCCCC-CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHH
Q 039828 193 LQKLGLLKMMHDKQPALLLIQDEQM-NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFL 271 (626)
Q Consensus 193 ~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 271 (626)
.+++..|..| .||||+|+..|+.+++++|++++++... ...|.||||+|+..|+.+++++|+
T Consensus 119 ---------------a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 119 ---------------WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp ---------------GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHH
Confidence 3344555555 5666666666666666666666554211 125666666666666666666666
Q ss_pred hccCCCCCcccccCCCchH-HHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828 272 EKENMPHPNELFNNKGQNI-LHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE 350 (626)
Q Consensus 272 ~~g~~~~~~~~~d~~g~t~-Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d 350 (626)
++|.+++. +|..|+|| ||+|+.+++.+++++|+++| ++++.+| +.|+..|+.+++++|+++| ++
T Consensus 182 ~~gad~n~---~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g----ad~~~~~-------~~a~~~~~~~iv~~Ll~~g-~~ 246 (285)
T 3kea_A 182 DYMTSTNT---NNSLLFIPDIKLAIDNKDIEMLQALFKYD----INIYSAN-------LENVLLDDAEIAKMIIEKH-VE 246 (285)
T ss_dssp HHHHHTCT---TCCCBCCTTHHHHHHHTCHHHHHHHTTSC----BCSTTTT-------GGGGTTTCHHHHHHHHHHH-HH
T ss_pred HcCCCCCc---ccCCCCChHHHHHHHcCCHHHHHHHHHcC----CCCCCCC-------hhhhhcCCHHHHHHHHHcC-CC
Confidence 66644433 36666665 77777777777777777666 5566555 2455667777777777777 66
Q ss_pred ccccc
Q 039828 351 SDIIN 355 (626)
Q Consensus 351 ~~~~n 355 (626)
++..+
T Consensus 247 ~~~~~ 251 (285)
T 3kea_A 247 YKSDS 251 (285)
T ss_dssp HTTCT
T ss_pred CCCcc
Confidence 55433
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.8e-32 Score=264.70 Aligned_cols=212 Identities=19% Similarity=0.191 Sum_probs=162.6
Q ss_pred ccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhh
Q 039828 29 ENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNAL 108 (626)
Q Consensus 29 ~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~ 108 (626)
.+ ++++|++.+++..+..|..|+||||+|+..|+.++|++|+++++++ +..|..|.||||+|+.
T Consensus 4 ~~--~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-- 67 (223)
T 2f8y_A 4 PA--VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA------------NIQDNMGRTPLHAAVS-- 67 (223)
T ss_dssp -C--CEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHH--
T ss_pred HH--HHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHH--
Confidence 67 8889999988755666899999999999999999999999988765 3467888888888888
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHH
Q 039828 109 QDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVK 188 (626)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~ 188 (626)
.++ .+++++|+++++......+..|.||||+|+..|+.+++++|++.+.. ....+..|.||||
T Consensus 68 -----~~~----------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~ 130 (223)
T 2f8y_A 68 -----ADA----------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD--VNAVDDLGKSALH 130 (223)
T ss_dssp -----TTC----------HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--TTCBCTTSCBHHH
T ss_pred -----cCC----------HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC--CcCcCCCCCcHHH
Confidence 888 88888888887744446778888888888888888888888887663 3344456777777
Q ss_pred HHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHH
Q 039828 189 VAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMG 268 (626)
Q Consensus 189 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~ 268 (626)
.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ .+..|..|.||+|+|+..|+.++++
T Consensus 131 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~ 208 (223)
T 2f8y_A 131 WAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVR 208 (223)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHH
Confidence 777777777777777775 56666777777777777777777777777777766 5666777777777777777777777
Q ss_pred HHHhccC
Q 039828 269 EFLEKEN 275 (626)
Q Consensus 269 ~Ll~~g~ 275 (626)
+|+++|.
T Consensus 209 ~L~~~g~ 215 (223)
T 2f8y_A 209 LLDEYNL 215 (223)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 7777654
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-32 Score=277.03 Aligned_cols=226 Identities=18% Similarity=0.115 Sum_probs=196.4
Q ss_pred HHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcC
Q 039828 127 DSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQ 206 (626)
Q Consensus 127 ~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 206 (626)
.++.++|.+.+. + ..|.+|.||||+|+..|+.+++++|++.+...+. . +|.||||.|+..|+.+++++|++.+
T Consensus 13 ~~v~~lL~~~~~--~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~--~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 13 KQLKSFLSSKDT--F-KADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--L--ENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHHHHSTTT--T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC--C--TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHHHHhCCC--C-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--C--CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 677777777643 3 6789999999999999999999999998764322 2 4899999999999999999999998
Q ss_pred CccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCC-ChHHHHHHhcCChHHHHHHHhccCCCCCcccccC
Q 039828 207 PALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEG-LYPFHLASANGCVPVMGEFLEKENMPHPNELFNN 285 (626)
Q Consensus 207 ~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~ 285 (626)
.+++..|..|.||||+|+..|+.+++++|++++++ ++..+..| .||||+|+..|+.+++++|+++|..... ..
T Consensus 86 -a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----~~ 159 (285)
T 3kea_A 86 -LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LA 159 (285)
T ss_dssp -CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC----CS
T ss_pred -CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc----cc
Confidence 77888999999999999999999999999999988 88889999 8999999999999999999997654421 22
Q ss_pred CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCH-HHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHH
Q 039828 286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP-LHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDI 364 (626)
Q Consensus 286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~Tp-LhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~l 364 (626)
.|+||||+|+.+|+.+++++|++.| +++|.+|..|+|| ||+|+..++.+++++|+++| ++++.+|..
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~------- 227 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDYM----TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANLE------- 227 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHH----HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTGG-------
T ss_pred CCccHHHHHHHcChHHHHHHHHHcC----CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCChh-------
Confidence 8999999999999999999999998 8999999999998 99999999999999999999 999998852
Q ss_pred HHHhccccccccc
Q 039828 365 AEQQYAKIIPEFS 377 (626)
Q Consensus 365 a~~~~~~~i~~~~ 377 (626)
+...++.++++++
T Consensus 228 a~~~~~~~iv~~L 240 (285)
T 3kea_A 228 NVLLDDAEIAKMI 240 (285)
T ss_dssp GGTTTCHHHHHHH
T ss_pred hhhcCCHHHHHHH
Confidence 2334455555543
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-34 Score=293.09 Aligned_cols=294 Identities=13% Similarity=0.090 Sum_probs=175.2
Q ss_pred CCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH-
Q 039828 11 PSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL- 89 (626)
Q Consensus 11 ~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~- 89 (626)
..+.+|+| ... .+ ++++|++++.+ ++.+|..|.|++| |+.++|+.|+++|.++........-.-
T Consensus 21 ~~~~~~~~----~~~---~d--lv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~ 85 (327)
T 1sw6_A 21 DRTAGPII----TFT---HD--LTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND 85 (327)
T ss_dssp ----CCEE----ECC---TT--CCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------
T ss_pred cccccchh----hhc---Cc--hHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcc
Confidence 34455565 334 56 89999999876 8899999999998 999999999999976522100000000
Q ss_pred -HHh---hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHH
Q 039828 90 -MEM---KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILE 165 (626)
Q Consensus 90 -l~~---~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (626)
... +.....+.+|.|+. ... .++++.|++.+.+++...|.+|+||||+|+..|+.++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~a~~-------~~~----------~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~ 148 (327)
T 1sw6_A 86 SSNRNSEGGSSNQQQQHVSFD-------SLL----------QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 148 (327)
T ss_dssp ------------------CHH-------HHH----------HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHH
T ss_pred cccccccccCCccchhHHHHH-------hhH----------HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Confidence 000 00001112244443 333 666777777777766336777777777777777777777
Q ss_pred HHHHhCCCCCccccccCCCCHHHHHHHhCC---HHHHHHHHhcCCccccccCCCCCchhhHHhh----CCCHHHHHHhhh
Q 039828 166 YILEALPVNDDCDAKLEGKSPVKVAIELQK---LGLLKMMHDKQPALLLIQDEQMNTPMHWAAS----VDHLEGVRFLYE 238 (626)
Q Consensus 166 ~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~----~g~~~~v~~Ll~ 238 (626)
+|+++++. ....+..|.||||+|+..|+ .++++.|++.+...++.+|..|.||||+|+. .|+.+++++|++
T Consensus 149 ~Ll~~Gad--~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~ 226 (327)
T 1sw6_A 149 HLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226 (327)
T ss_dssp HHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHcCCC--CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHH
Confidence 77777653 33445566777777777666 5566666665545566666666666666666 666666666666
Q ss_pred cCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcc
Q 039828 239 INPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLIN 318 (626)
Q Consensus 239 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in 318 (626)
.+....... +...+...+...|.++ +.++..|+||||.|+. +++|++.+ +|
T Consensus 227 ~~~~~~~~~--------------~~~~i~~~~~~~g~~~---~~~~~~g~t~L~~a~~------~~~Ll~~~------~n 277 (327)
T 1sw6_A 227 ILMGWIVKK--------------QNRPIQSGTNEKESKP---NDKNGERKDSILENLD------LKWIIANM------LN 277 (327)
T ss_dssp HHHHHHHHG--------------GGCCEEEC-------------------CHHHHHCS------HHHHHHHT------TT
T ss_pred HHHHHHhcc--------------cchHHHhhhhcccCCc---ccccccCCChhHHHHH------HHHHHHhC------CC
Confidence 532210000 0000000011113333 3457888899998885 78888763 78
Q ss_pred cCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828 319 EMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368 (626)
Q Consensus 319 ~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~ 368 (626)
.+|..|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|++.
T Consensus 278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 278 AQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp CCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC-
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhc
Confidence 88899999999999999999999999988 99999999999999988754
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=7e-34 Score=291.45 Aligned_cols=259 Identities=13% Similarity=0.078 Sum_probs=180.4
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHH
Q 039828 49 NSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDS 128 (626)
Q Consensus 49 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~ 128 (626)
+..+.+|+|. ...++|++|+++|+++ +..+..|.|+++ |+ .+
T Consensus 20 ~~~~~~~~~~----~~~dlv~~ll~~ga~i------------~~~~~~g~~~~~------------g~----------~~ 61 (327)
T 1sw6_A 20 NDRTAGPIIT----FTHDLTSDFLSSPLKI------------MKALPSPVVNDN------------EQ----------KM 61 (327)
T ss_dssp -----CCEEE----CCTTCCCSTTTSSCCC------------EECBCCCCCCCH------------HH----------HH
T ss_pred ccccccchhh----hcCchHHHHhhCCccc------------ccCCCCCCcccC------------ch----------hH
Confidence 4556677773 5668899999999876 347889999976 34 89
Q ss_pred HHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc
Q 039828 129 LARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208 (626)
Q Consensus 129 i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 208 (626)
+++.|++++.+.. .++++.|+..... + ..........+..|.|+..+..++++.|++.+ .
T Consensus 62 ~v~~Ll~~g~~~~-------~~~~~~a~~~~~~----------~--~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g-~ 121 (327)
T 1sw6_A 62 KLEAFLQRLLFPE-------IQEMPTSLNNDSS----------N--RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ-L 121 (327)
T ss_dssp HHHHHHHHHHC--------------------------------------------------CHHHHHHHHHHHCTTSC-C
T ss_pred HHHHHHHhccCCc-------cccchHhhhcccc----------c--ccccccCCccchhHHHHHhhHHHHHHHHHhcC-C
Confidence 9999999987643 3567766653210 0 00111122345568888888888999988887 7
Q ss_pred cccc-cCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCC---hHHHHHHHhccCCCCCccccc
Q 039828 209 LLLI-QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGC---VPVMGEFLEKENMPHPNELFN 284 (626)
Q Consensus 209 ~~~~-~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~g~~~~~~~~~d 284 (626)
+++. +|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+ .++++.|++.+. ...+.+|
T Consensus 122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~--~~~~~~d 198 (327)
T 1sw6_A 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY--PCLILED 198 (327)
T ss_dssp CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG--GGGGEEC
T ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh--ccccCCC
Confidence 7888 899999999999999999999999999988 78899999999999999998 788888887542 3456679
Q ss_pred CCCchHHHHHHH----cCChHHHHHHHHcCC----------------cchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828 285 NKGQNILHVAAK----KGRDVSVTHILEASD----------------LTDKLINEMDDDGNTPLHLAALYGHYFVAVILG 344 (626)
Q Consensus 285 ~~g~t~Lh~A~~----~~~~~i~~~Ll~~~~----------------~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll 344 (626)
..|+||||+|+. .|+.+++++|++.+. ...++++.+|..|.||||.|+. +++|+
T Consensus 199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll 272 (327)
T 1sw6_A 199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWII 272 (327)
T ss_dssp TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHH
T ss_pred CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHH
Confidence 999999999999 899999999998731 0148899999999999999995 88888
Q ss_pred hCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828 345 KDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS 377 (626)
Q Consensus 345 ~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~ 377 (626)
+. +++.+|..|+||||+|+..++.++++++
T Consensus 273 ~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~L 302 (327)
T 1sw6_A 273 AN---MLNAQDSNGDTCLNIAARLGNISIVDAL 302 (327)
T ss_dssp HH---TTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred Hh---CCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 87 5889999999999999999999988875
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=9e-33 Score=269.53 Aligned_cols=217 Identities=18% Similarity=0.169 Sum_probs=188.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--CccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCch
Q 039828 143 LMNVDCKSPLYLAVESKNEDILEYILEALPVN--DDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP 220 (626)
Q Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 220 (626)
..|.+|.||||+|+..|+.+++++|++.+... +....+..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCH
Confidence 46889999999999999999999999876532 34556678999999999999999999999998 7788899999999
Q ss_pred hhHHhhCCCHHHHHHhhhcCCCc-----ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccC-CCchHHHHH
Q 039828 221 MHWAASVDHLEGVRFLYEINPDS-----VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNN-KGQNILHVA 294 (626)
Q Consensus 221 Lh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A 294 (626)
||+|+..|+.+++++|++.+++. .+..+..|.||||+|+..|+.+++++|+++|.+++.. +. .|+||||+|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---~~~~g~tpL~~A 158 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGRTALHLA 158 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC---CTTTCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCCCCCCHHHHH
Confidence 99999999999999999998642 5678889999999999999999999999988666544 65 899999999
Q ss_pred HHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc--ccccCCCCHHHHHHHh
Q 039828 295 AKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD--IINFYGQTAYDIAEQQ 368 (626)
Q Consensus 295 ~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~--~~n~~g~tpl~la~~~ 368 (626)
+..|+.+++++|++.| ++++.+|..|+||||+|+..++.+++++|+++| ++.. ..+..|.||.+.+.+.
T Consensus 159 ~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCG----ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHTTCHHHHHHHHTTT----CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS-CGGGSSCCCCCTTTCCCCC---
T ss_pred HHcCCHHHHHHHHHcC----CCCCcccCCCCCHHHHHHccCchHHHHHHHHcc-hhhhhcCCccchHHHHhhhccc
Confidence 9999999999999998 889999999999999999999999999999999 7765 8899999998876654
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=9.4e-32 Score=262.31 Aligned_cols=216 Identities=18% Similarity=0.184 Sum_probs=161.9
Q ss_pred ccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcc---cccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccc
Q 039828 7 TITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPF---LITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQ 83 (626)
Q Consensus 7 ~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~---~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~ 83 (626)
+.+|.+|+||||+|+..|+ .+ ++++|++.++. +++.+|..|+||||+|+..|+.++|++|+++|++++
T Consensus 2 ~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---- 72 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEE---KA--LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE---- 72 (236)
T ss_dssp -----CCCCTTHHHHHTTC---SS--SSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC----
T ss_pred CcCCCCCCchhHHHHHcCC---hh--HHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----
Confidence 5678899999999999999 88 88888887653 478888999999999999999999999999887653
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCc-----ccccCCCCCcHHHHHHHc
Q 039828 84 IDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNA-----SYLMNVDCKSPLYLAVES 158 (626)
Q Consensus 84 ~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~ 158 (626)
.+|..|.||||+|+. .++ .+++++|++.+.+. ....+..|.||||+|+..
T Consensus 73 --------~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 127 (236)
T 1ikn_D 73 --------LRDFRGNTPLHLACE-------QGC----------LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127 (236)
T ss_dssp --------CCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT
T ss_pred --------CcCCCCCCHHHHHHH-------cCC----------HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc
Confidence 367888899999988 888 88888888887642 235677788888888888
Q ss_pred CCHHHHHHHHHhCCCCCcccccc-CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhh
Q 039828 159 KNEDILEYILEALPVNDDCDAKL-EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLY 237 (626)
Q Consensus 159 g~~~~v~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll 237 (626)
|+.+++++|++.+.. ....+. .|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|+
T Consensus 128 ~~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 204 (236)
T 1ikn_D 128 GYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204 (236)
T ss_dssp TCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence 888888888888763 333343 6788888888888888888888776 667777788888888888888888888888
Q ss_pred hcCCCcc-cccCCCCChHHHHHH
Q 039828 238 EINPDSV-LQKNEEGLYPFHLAS 259 (626)
Q Consensus 238 ~~~~~~~-~~~d~~g~tpLh~A~ 259 (626)
+++++.. ...+..|.||...+.
T Consensus 205 ~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 205 QLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp TTSCGGGSSCCCCCTTTCCCCC-
T ss_pred HcchhhhhcCCccchHHHHhhhc
Confidence 8877633 355666666655443
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.6e-30 Score=251.30 Aligned_cols=199 Identities=18% Similarity=0.200 Sum_probs=162.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHh-CCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccc----cccCCCCCchh
Q 039828 147 DCKSPLYLAVESKNEDILEYILEA-LPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALL----LIQDEQMNTPM 221 (626)
Q Consensus 147 ~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tpL 221 (626)
.|+||||+|+..|+.+++++|++. +. +....+..|.||||+|+..|+.+++++|++.++... +..|..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGC--EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 478999999999999999999987 54 344556789999999999999999999999884432 55677899999
Q ss_pred hHHhhCCCHHHHHHhhhcCCCcccccCC-------------CCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc
Q 039828 222 HWAASVDHLEGVRFLYEINPDSVLQKNE-------------EGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ 288 (626)
Q Consensus 222 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~ 288 (626)
|+|+..|+.+++++|++.+++ .+..+. .|.||||+|+..|+.+++++|+++|.+++ .+|..|+
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~d~~g~ 155 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR---AQDSLGN 155 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSC
T ss_pred HHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCC
Confidence 999999999999999999887 544443 79999999999999999999999876554 4488899
Q ss_pred hHHHHHHHcCChHHH----HHHHHcCCcch--hhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccc
Q 039828 289 NILHVAAKKGRDVSV----THILEASDLTD--KLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESD 352 (626)
Q Consensus 289 t~Lh~A~~~~~~~i~----~~Ll~~~~~~~--~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~ 352 (626)
||||+|+.+++.+++ ++|++.+.... ...+.+|..|+||||+|+..|+.+++++|+++| .+..
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g-~~~~ 224 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR-KHIA 224 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HHC-
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC-ccch
Confidence 999999999998887 88888873211 112688899999999999999999999999887 4443
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.7e-30 Score=252.51 Aligned_cols=214 Identities=22% Similarity=0.245 Sum_probs=171.6
Q ss_pred CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME 91 (626)
Q Consensus 12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~ 91 (626)
.|+||||+|+..|+ .+ ++++|++..+.+++.+|..|+||||+|+..|+.++|++|++.++++.. ...+
T Consensus 2 ~g~t~L~~A~~~g~---~~--~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-------~~~~ 69 (232)
T 2rfa_A 2 IWESPLLLAAKEND---VQ--ALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF-------EPMT 69 (232)
T ss_dssp CTTCHHHHHHHTTC---HH--HHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-------CCCC
T ss_pred CCCCHHHHHHHcCC---HH--HHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc-------cccc
Confidence 58999999999999 88 999999985556999999999999999999999999999999876421 1123
Q ss_pred hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828 92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171 (626)
Q Consensus 92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (626)
.+|..|.||||+|+. .++ .+++++|++++++++. .+.. +.+.
T Consensus 70 ~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~~-~~~~--~~~~------------------ 111 (232)
T 2rfa_A 70 SELYEGQTALHIAVI-------NQN----------VNLVRALLARGASVSA-RATG--SVFH------------------ 111 (232)
T ss_dssp STTTTTCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTTC-CCCS--GGGS------------------
T ss_pred ccCCCCcCHHHHHHH-------cCC----------HHHHHHHHhCCCCCCc-ccCC--ccee------------------
Confidence 467899999999999 999 9999999999998873 3221 1110
Q ss_pred CCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHH----HHhhhcCCCcc---
Q 039828 172 PVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGV----RFLYEINPDSV--- 244 (626)
Q Consensus 172 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v----~~Ll~~~~~~~--- 244 (626)
......+..|.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++ ++|++.+++..
T Consensus 112 --~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 188 (232)
T 2rfa_A 112 --YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188 (232)
T ss_dssp --CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC
T ss_pred --ecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh
Confidence 012234456888888888888888888888877 67778888888888888888888877 88888887632
Q ss_pred --cccCCCCChHHHHHHhcCChHHHHHHHhccCCCC
Q 039828 245 --LQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH 278 (626)
Q Consensus 245 --~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~ 278 (626)
+..|..|.||||+|+..|+.+++++|+++|..+.
T Consensus 189 ~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 5778888999999999999999999988775443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.4e-29 Score=240.15 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=165.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHH
Q 039828 145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 224 (626)
Q Consensus 145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 224 (626)
+..+.||||.|+..|+.+.++.|++.++. +....+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence 35678999999999999999999987652 23445567899999999999999999999987 67888889999999999
Q ss_pred hhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCC-----
Q 039828 225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGR----- 299 (626)
Q Consensus 225 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~----- 299 (626)
+..|+.+++++|++.+....+..|..|.||||.|+..|+.+++++|+++| +...+.+|..|+||||+|+..++
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG--REDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC--CCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 99999999999996666558888889999999999999999999999866 23344558889999999998887
Q ss_pred hHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828 300 DVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347 (626)
Q Consensus 300 ~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g 347 (626)
.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 158 ~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 158 QDIVKLLMENG----ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHHHCC----CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 88999999988 788889999999999999999999999998875
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1e-29 Score=241.15 Aligned_cols=189 Identities=23% Similarity=0.203 Sum_probs=174.9
Q ss_pred cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA 260 (626)
Q Consensus 181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 260 (626)
..+.||||.|+..|+.+.++.|++.++.+++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 36899999999999999999999999878999999999999999999999999999999988 88899999999999999
Q ss_pred cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC----
Q 039828 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH---- 336 (626)
Q Consensus 261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~---- 336 (626)
.|+.+++++|++.+ ....+..|..|+||||+|+.+++.+++++|++.+ ..+++.+|..|+||||+|+..++
T Consensus 82 ~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 82 QGRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG---REDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp TTCHHHHHHHHHHS--CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC---CCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred cCCHHHHHHHHhcc--CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 99999999999643 3344566899999999999999999999999997 36789999999999999999998
Q ss_pred -HHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828 337 -YFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 337 -~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
.+++++|++.| ++++.+|..|+||+|+|...++.+++++
T Consensus 157 ~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 157 YQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 99999999999 9999999999999999999988877765
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=6.9e-30 Score=254.90 Aligned_cols=220 Identities=21% Similarity=0.205 Sum_probs=137.7
Q ss_pred ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhh----Cccccc----ccccCCCcHHHHHHHc---CCHHHHHHHHH
Q 039828 5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARK----YPFLIT----MQNSKGDTPLHVAARD---GMLQTAKILVD 73 (626)
Q Consensus 5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~----~~~~l~----~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~ 73 (626)
..+..|..|+|+||+||..|+ .+ +++.|++. +.. ++ ..|..|+||||+||.. |+.++|++|++
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~---~~--~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~ 78 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSN---CQ--ELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD 78 (273)
T ss_dssp ------CCCHHHHHHHHHTTC---SS--TTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH
T ss_pred cCCCCCcccchHHHHHHHcCC---HH--HHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 346688999999999999999 88 88888874 322 33 4588999999999987 99999999999
Q ss_pred ccccCCCccchhhhHHHHh----hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCC
Q 039828 74 CAKRMTSSSQIDVKFLMEM----KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCK 149 (626)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~----~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~ 149 (626)
.|++... .+..++. .|..|.||||+|+. .++ .+++++|++++++++ ..+..+.
T Consensus 79 ~ga~~~~-----~~~~i~~~~~~~d~~g~tpL~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~~~ 135 (273)
T 2pnn_A 79 VARKTDS-----LKQFVNASYTDSYYKGQTALHIAIE-------RRN----------MTLVTLLVENGADVQ-AAANGDF 135 (273)
T ss_dssp HHHHTTC-----HHHHHTCCCCSTTTTTCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCBCSGG
T ss_pred hhccccc-----hhHHhhcccccccCCCCCHHHHHHH-------cCC----------HHHHHHHHHCCCCcC-ccccccc
Confidence 9876422 2222333 56799999999999 999 999999999999987 4444210
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh---cCCccccccCCCCCchhhHHhh
Q 039828 150 SPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD---KQPALLLIQDEQMNTPMHWAAS 226 (626)
Q Consensus 150 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~Aa~ 226 (626)
.. ..+....+..|.||||+|+..|+.+++++|++ .+ .+++.+|..|+||||+|+.
T Consensus 136 ------------------~~---~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~ 193 (273)
T 2pnn_A 136 ------------------FK---KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALVE 193 (273)
T ss_dssp ------------------GS---SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHH
T ss_pred ------------------cc---cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHHH
Confidence 00 00111122234455555555555555555554 33 4444555555555555555
Q ss_pred CCC---------HHHHHHhhhcCCCcc------cccCCCCChHHHHHHhcCChHHHHHHHhccC
Q 039828 227 VDH---------LEGVRFLYEINPDSV------LQKNEEGLYPFHLASANGCVPVMGEFLEKEN 275 (626)
Q Consensus 227 ~g~---------~~~v~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~ 275 (626)
.|+ .+++++|++.+++.. +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 194 ~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 544 455555555554411 1355555555555555555555555555554
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=3.1e-30 Score=257.44 Aligned_cols=213 Identities=19% Similarity=0.145 Sum_probs=168.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhC----CCCCc--cccccCCCCHHHHHHHh---CCHHHHHHHHhcCCcc----
Q 039828 143 LMNVDCKSPLYLAVESKNEDILEYILEAL----PVNDD--CDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPAL---- 209 (626)
Q Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~----~~~~~--~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~---- 209 (626)
..|..|.||||.|+..|+.++++.|++.+ ..... ...+..|.||||+|+.. |+.+++++|++.+...
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 46889999999999999999999998743 21111 12466899999999987 9999999999986221
Q ss_pred --cc----ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCC--------------CCChHHHHHHhcCChHHHHH
Q 039828 210 --LL----IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNE--------------EGLYPFHLASANGCVPVMGE 269 (626)
Q Consensus 210 --~~----~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~~ 269 (626)
++ ..|..|.||||+|+..|+.+++++|++.+++ ++..+. .|.||||+|+..|+.+++++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 22 2567899999999999999999999999988 666665 79999999999999999999
Q ss_pred HHh---ccCCCCCcccccCCCchHHHHHHHcCC---------hHHHHHHHHcCCcchhhcc-------cCCCCCCCHHHH
Q 039828 270 FLE---KENMPHPNELFNNKGQNILHVAAKKGR---------DVSVTHILEASDLTDKLIN-------EMDDDGNTPLHL 330 (626)
Q Consensus 270 Ll~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~i~~~Ll~~~~~~~~~in-------~~d~~G~TpLhl 330 (626)
|++ +|.+++ .+|..|+||||+|+..++ .+++++|++.| +++| .+|..|+||||+
T Consensus 167 Ll~~~~~gad~~---~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g----a~~n~~~~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 167 LLQNSWQPADIS---ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----AKLHPTLKLEEITNRKGLTPLAL 239 (273)
T ss_dssp HHHCSSCCCCTT---CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH----HHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHhcccCCCCce---eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh----hhcccccccccccCCCCCCHHHH
Confidence 999 665554 558999999999999998 79999999998 7775 589999999999
Q ss_pred HHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828 331 AALYGHYFVAVILGKDGRAESDIINFYGQTAYD 363 (626)
Q Consensus 331 A~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~ 363 (626)
|+..|+.+++++|+++|..|+......+.+|-+
T Consensus 240 A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 240 AASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHTTCHHHHHHHHHHHTC--------------
T ss_pred HHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 999999999999999994488888777776643
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=4.2e-29 Score=229.48 Aligned_cols=159 Identities=29% Similarity=0.334 Sum_probs=141.6
Q ss_pred CHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCCh
Q 039828 185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264 (626)
Q Consensus 185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~ 264 (626)
++|+.|+..|+.++++.|++.+ .+++.+|..|.||||+|+..++.+++++|++.+++ ++.+|.+|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence 3688899999999999999988 77889999999999999999999999999999988 888999999999999999999
Q ss_pred HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG 344 (626)
Q Consensus 265 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll 344 (626)
+++++|+++|.+++ .+|.+|+||||+|+.+|+.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++|+
T Consensus 84 ~~v~~Ll~~gadvn---~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll 156 (169)
T 4gpm_A 84 EVVKLLISKGADVN---AKDSDGRTPLHHAAENGHKEVVKLLISKG----ADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156 (169)
T ss_dssp HHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCcCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999886654 45889999999999999999999999998 889999999999999999999999999999
Q ss_pred hCCCCcccc
Q 039828 345 KDGRAESDI 353 (626)
Q Consensus 345 ~~g~~d~~~ 353 (626)
++| ++++.
T Consensus 157 ~~G-A~ie~ 164 (169)
T 4gpm_A 157 KQG-GWLEH 164 (169)
T ss_dssp TC-------
T ss_pred HCC-CCcCC
Confidence 999 88764
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=2.1e-29 Score=248.86 Aligned_cols=192 Identities=19% Similarity=0.145 Sum_probs=161.7
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHhCCCCCc--cccccCCCCHHHHHHHh---CCHHHHHHHHhcCCcccc------
Q 039828 147 DCKSPLYLAVESKNED----ILEYILEALPVNDD--CDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLL------ 211 (626)
Q Consensus 147 ~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~--~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~------ 211 (626)
.|+||||.|+..|+.+ ++++|++.+...+. ...+..|.||||+|+.. |+.+++++|++.+ ...+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-Ccccchhhhc
Confidence 4789999999999997 66777777763322 01567899999999999 9999999999987 3332
Q ss_pred -----ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCC-------------CChHHHHHHhcCChHHHHHHHh-
Q 039828 212 -----IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEE-------------GLYPFHLASANGCVPVMGEFLE- 272 (626)
Q Consensus 212 -----~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~- 272 (626)
..|..|.||||+|+..|+.+++++|++.+++ ++..+.. |.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 2346799999999999999999999999888 6666665 9999999999999999999999
Q ss_pred --ccCCCCCcccccCCCchHHHHHHH--cCChH-------HHHHHHHcCCcchhhc-------ccCCCCCCCHHHHHHHh
Q 039828 273 --KENMPHPNELFNNKGQNILHVAAK--KGRDV-------SVTHILEASDLTDKLI-------NEMDDDGNTPLHLAALY 334 (626)
Q Consensus 273 --~g~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------i~~~Ll~~~~~~~~~i-------n~~d~~G~TpLhlA~~~ 334 (626)
+|.+++ .+|..|+||||+|+. +++.+ ++++|++.| +++ +.+|..|+||||+|+..
T Consensus 159 ~~~ga~~n---~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g----a~~~~~~~~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 159 PHQPASLE---ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG----ARLCPTVQLEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp SSCCCCTT---CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH----HHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred cccCCCcC---ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC----CCcccccccccccCCCCCCHHHHHHHh
Confidence 665544 458899999999998 77887 999999997 777 88999999999999999
Q ss_pred CCHHHHHHHhhCC
Q 039828 335 GHYFVAVILGKDG 347 (626)
Q Consensus 335 ~~~~iv~~Ll~~g 347 (626)
|+.+++++|+++|
T Consensus 232 g~~~~v~~Ll~~g 244 (256)
T 2etb_A 232 GKIEIFRHILQRE 244 (256)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCC
Confidence 9999999999887
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=5.2e-29 Score=246.00 Aligned_cols=216 Identities=19% Similarity=0.198 Sum_probs=147.4
Q ss_pred CCCcHHHHHHhcCCCccccH--HHHHHHHhhCcccccc----cccCCCcHHHHHHHc---CCHHHHHHHHHccccCCCcc
Q 039828 12 SGNTLLHIAAAGSIRNHENM--AMATTLARKYPFLITM----QNSKGDTPLHVAARD---GMLQTAKILVDCAKRMTSSS 82 (626)
Q Consensus 12 ~g~t~LH~Aa~~g~~~~~~~--~~v~~Ll~~~~~~l~~----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~ 82 (626)
.|+||||+||..|+ .+. .+++++++.+.+ ++. +|..|+||||+|+.. |+.++|++|++.|+++....
T Consensus 1 ~G~t~L~~A~~~g~---~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 76 (256)
T 2etb_A 1 FDRDRLFSVVSRGV---PEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK 76 (256)
T ss_dssp CCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS
T ss_pred CCccHHHHHHHcCC---HHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh
Confidence 38999999999999 641 156777777765 776 899999999999999 99999999999998763211
Q ss_pred chhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHH
Q 039828 83 QIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNED 162 (626)
Q Consensus 83 ~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (626)
. ........+|..|.||||+|+. .++ .+++++|++++++++ ..+..+.++
T Consensus 77 ~-~~~~~~~~~d~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~~~~~----------- 126 (256)
T 2etb_A 77 P-LVNAQCTDEFYQGHSALHIAIE-------KRS----------LQCVKLLVENGADVH-LRACGRFFQ----------- 126 (256)
T ss_dssp C-GGGCCCCSTTTTTCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCCSGGGS-----------
T ss_pred h-hcccccccccccCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccccccccc-----------
Confidence 0 0011112245789999999999 999 999999999999987 444442110
Q ss_pred HHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHh---cCCccccccCCCCCchhhHHhh--CCCHH------
Q 039828 163 ILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD---KQPALLLIQDEQMNTPMHWAAS--VDHLE------ 231 (626)
Q Consensus 163 ~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~Aa~--~g~~~------ 231 (626)
.+....+..|.||||.|+..|+.+++++|++ .+ .+++.+|..|+||||+|+. .++.+
T Consensus 127 -----------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~ 194 (256)
T 2etb_A 127 -----------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVI 194 (256)
T ss_dssp -----------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred -----------ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHHHHHHcccCCchhhHHHH
Confidence 0111222235566666666666666666665 33 5556666666666666666 55655
Q ss_pred -HHHHhhhcCCCcc-------cccCCCCChHHHHHHhcCChHHHHHHHhcc
Q 039828 232 -GVRFLYEINPDSV-------LQKNEEGLYPFHLASANGCVPVMGEFLEKE 274 (626)
Q Consensus 232 -~v~~Ll~~~~~~~-------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 274 (626)
++++|++.+++ + +.+|..|.||||+|+..|+.+++++|+++|
T Consensus 195 ~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 195 HMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 66666666665 3 566666777777777777777777776655
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2e-28 Score=242.34 Aligned_cols=195 Identities=19% Similarity=0.156 Sum_probs=164.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHH----HHhCCCCCccc--cccCCCCHHHHHH---HhCCHHHHHHHHhcCC--------
Q 039828 145 NVDCKSPLYLAVESKNEDILEYI----LEALPVNDDCD--AKLEGKSPVKVAI---ELQKLGLLKMMHDKQP-------- 207 (626)
Q Consensus 145 ~~~g~tpL~~A~~~g~~~~v~~L----l~~~~~~~~~~--~~~~g~t~L~~A~---~~g~~~~v~~Ll~~~~-------- 207 (626)
+..++++||.|+..|+.+.++.| ++.+....... .+..|.||||.|+ ..|+.+++++|++.+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 56789999999999999955544 44776444332 2367999999999 6799999999999762
Q ss_pred --ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC--------------CCCChHHHHHHhcCChHHHHHHH
Q 039828 208 --ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN--------------EEGLYPFHLASANGCVPVMGEFL 271 (626)
Q Consensus 208 --~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll 271 (626)
...+..|..|.||||+|+..|+.+++++|++.+++ ++..+ ..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 22344556899999999999999999999999988 66676 58999999999999999999999
Q ss_pred h---ccCCCCCcccccCCCchHHHHHHHcCC---------hHHHHHHHHcCCcchhhc-------ccCCCCCCCHHHHHH
Q 039828 272 E---KENMPHPNELFNNKGQNILHVAAKKGR---------DVSVTHILEASDLTDKLI-------NEMDDDGNTPLHLAA 332 (626)
Q Consensus 272 ~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~i~~~Ll~~~~~~~~~i-------n~~d~~G~TpLhlA~ 332 (626)
+ +|.++ +.+|..|+||||+|+..++ .+++++|++.| +++ +.+|..|+||||+|+
T Consensus 161 ~~~~~ga~~---~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g----a~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 161 ENGHKQADL---RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC----AKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HCSSCCCCT---TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH----HHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred hccccCCCC---cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC----cccccccchhhcccCCCCCHHHHHH
Confidence 9 66554 4568999999999998887 68999999998 666 779999999999999
Q ss_pred HhCCHHHHHHHhhCC
Q 039828 333 LYGHYFVAVILGKDG 347 (626)
Q Consensus 333 ~~~~~~iv~~Ll~~g 347 (626)
..|+.+++++|+++|
T Consensus 234 ~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 234 KTGKIGIFQHIIRRE 248 (260)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhC
Confidence 999999999999988
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=5.6e-28 Score=221.97 Aligned_cols=149 Identities=28% Similarity=0.352 Sum_probs=141.1
Q ss_pred chhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcC
Q 039828 219 TPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKG 298 (626)
Q Consensus 219 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~ 298 (626)
++|+.|++.|+.++|+.|++.|++ ++.+|.+|.||||+|+..++.++++.|+++|.+++ .+|..|+||||+|+.+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~---~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN---AKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh---hhccCCCCHHHHHHHcC
Confidence 579999999999999999999998 88999999999999999999999999999886654 45899999999999999
Q ss_pred ChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828 299 RDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 299 ~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
+.+++++|++.| +++|.+|.+|+||||+|+..|+.+++++|++.| ++++.+|.+|+|||++|++.++.+++++
T Consensus 82 ~~~~v~~Ll~~g----advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~ 154 (169)
T 4gpm_A 82 HKEVVKLLISKG----ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKL 154 (169)
T ss_dssp CHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHCc----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999998 889999999999999999999999999999999 9999999999999999999988877776
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=2.9e-28 Score=241.20 Aligned_cols=203 Identities=19% Similarity=0.185 Sum_probs=126.3
Q ss_pred cCCCCcHHHHHHhcCCCccccHHHHHHHHh----hCcccccccc----cCCCcHHHHHH---HcCCHHHHHHHHHccccC
Q 039828 10 SPSGNTLLHIAAAGSIRNHENMAMATTLAR----KYPFLITMQN----SKGDTPLHVAA---RDGMLQTAKILVDCAKRM 78 (626)
Q Consensus 10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~----~~~~~l~~~d----~~G~TpLh~Aa---~~g~~~iv~~Ll~~~~~~ 78 (626)
+..|+|+||.||..|+ .+ .++.|++ .+.+ ++..+ ..|+||||+|+ +.|+.++|++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~---~~--~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 75 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGS---PD--GLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75 (260)
T ss_dssp CCCCHHHHHHHHHHTC---GG--GGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhCC---HH--HHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence 4578999999999999 76 6555555 6665 55554 77999999999 779999999999998764
Q ss_pred CCccchhhhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccC-------------
Q 039828 79 TSSSQIDVKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMN------------- 145 (626)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~------------- 145 (626)
..... -....++..|..|.||||+|+. .++ .+++++|++++++++ ..+
T Consensus 76 ~~~~~-~~~~~~~~~d~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~ 136 (260)
T 3jxi_A 76 GNMRE-FINSPFRDVYYRGQTALHIAIE-------RRC----------KHYVELLVEKGADVH-AQARGRFFQPKDEGGY 136 (260)
T ss_dssp TCHHH-HHTCCBCCSSEESBCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCEECCCSSSCCCCS
T ss_pred cchHh-hhcccccccccCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCcC-ccccccccCccccccc
Confidence 32100 0111223456699999999999 999 999999999999987 444
Q ss_pred -CCCCcHHHHHHHcCCHHHHHHHHH---hCCCCCccccccCCCCHHHHHHHhCC---------HHHHHHHHhcCCccc--
Q 039828 146 -VDCKSPLYLAVESKNEDILEYILE---ALPVNDDCDAKLEGKSPVKVAIELQK---------LGLLKMMHDKQPALL-- 210 (626)
Q Consensus 146 -~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~-- 210 (626)
..|.||||+|+..|+.+++++|++ .+. +....+..|.||||+|+..++ .+++++|++.+ .++
T Consensus 137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga--~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~ 213 (260)
T 3jxi_A 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFP 213 (260)
T ss_dssp CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC--CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhccccCC--CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-ccccc
Confidence 345555555555555555555555 333 222333344444444444444 34444444443 222
Q ss_pred -----cccCCCCCchhhHHhhCCCHHHHHHhhhcC
Q 039828 211 -----LIQDEQMNTPMHWAASVDHLEGVRFLYEIN 240 (626)
Q Consensus 211 -----~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~ 240 (626)
+..|..|.||||+|+..|+.+++++|++++
T Consensus 214 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 234444444444444444444444444443
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.1e-27 Score=221.24 Aligned_cols=170 Identities=24% Similarity=0.268 Sum_probs=149.9
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC
Q 039828 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262 (626)
Q Consensus 183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 262 (626)
+.+|||.|+..|+.++++.|++.++..++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 468899999999999999999999777899999999999999999999999999999988 7888999999999999999
Q ss_pred ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHH
Q 039828 263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342 (626)
Q Consensus 263 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~ 342 (626)
+.+++++|+++|.+++ .+|..|+||||+|+.+++.+++++|++.| ++++.+|..|+||||+|+..++.+++++
T Consensus 81 ~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 81 YTDIVGLLLERDVDIN---IYDWNGGTPLLYAVRGNHVKCVEALLARG----ADLTTEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp CHHHHHHHHTTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence 9999999999775544 45889999999999999999999999998 8899999999999999999999999999
Q ss_pred HhhCCCCcccccccCCCCH
Q 039828 343 LGKDGRAESDIINFYGQTA 361 (626)
Q Consensus 343 Ll~~g~~d~~~~n~~g~tp 361 (626)
|++++ ++....|..|.||
T Consensus 154 L~~~~-~~~~~~~~~~~~p 171 (172)
T 3v30_A 154 IENHI-LKLFQSNLVPADP 171 (172)
T ss_dssp HHHHH-HHHSCC-------
T ss_pred HHHHH-HHHhcccCCCCCC
Confidence 99999 8999999988887
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.2e-29 Score=262.94 Aligned_cols=286 Identities=13% Similarity=0.083 Sum_probs=190.4
Q ss_pred CCcHHHHHHh-cCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828 13 GNTLLHIAAA-GSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME 91 (626)
Q Consensus 13 g~t~LH~Aa~-~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~ 91 (626)
+.+++++|+. .++ .+ +++++++++.+ ++||||+||+.|+.++|++|++.++.... .+
T Consensus 65 ~ll~~~~a~~~~~~---~~--~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---------~~ 122 (376)
T 2aja_A 65 QLLCLYYAHYNRNA---KQ--LWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEI---------VK 122 (376)
T ss_dssp HHHHHHHHHTTTTC---TT--HHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSS---------CC
T ss_pred HHHHHHHHHhcCCC---HH--HHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHH---------HH
Confidence 3457777776 466 77 88888876543 45999999999999999999988763211 01
Q ss_pred hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828 92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNAS--YLMNVDCKSPLYLAVESKNEDILEYILE 169 (626)
Q Consensus 92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (626)
..|..|.||||+|+. .|+ .+++++|++++++.. ...+.+ .||||+|+..|+.+++++|++
T Consensus 123 ~~~~~~~tpL~~Aa~-------~G~----------~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~ 184 (376)
T 2aja_A 123 VIQAENYQAFRLAAE-------NGH----------LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE 184 (376)
T ss_dssp --CHHHHHHHHHHHH-------TTC----------HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred HhccCCCCHHHHHHH-------cCC----------HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH
Confidence 244567789999999 899 999999999987521 122223 899999999999999999999
Q ss_pred hCCCCCccccccCCCCHHHHHH-HhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC
Q 039828 170 ALPVNDDCDAKLEGKSPVKVAI-ELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN 248 (626)
Q Consensus 170 ~~~~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d 248 (626)
+++.......+..|.||||.|+ ..|+.+++++|++.+ . .|.||||+|+..|+.+++++|++.+++ .+..+
T Consensus 185 ~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~ 255 (376)
T 2aja_A 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH 255 (376)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH
T ss_pred cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc
Confidence 8763221114556889999999 999999999999855 2 278999999999999999999988776 33332
Q ss_pred CCCChHHHHHHhcCChHHH------------HHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcch-h
Q 039828 249 EEGLYPFHLASANGCVPVM------------GEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTD-K 315 (626)
Q Consensus 249 ~~g~tpLh~A~~~g~~~~v------------~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~-~ 315 (626)
++++.|+..|+.+++ +.++.++ ..+..+.+++|++.+.... .
T Consensus 256 ----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~---------------------~~~~~~~~~~Ll~~~~vk~l~ 310 (376)
T 2aja_A 256 ----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN---------------------DEVLLDDIRFLLSIPGIKALA 310 (376)
T ss_dssp ----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC---------------------CGGGHHHHHHHHTSTTTGGGS
T ss_pred ----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc---------------------hhhHHHHHHHHHhChhhhhhh
Confidence 367788888877743 3344422 1123566777776532110 1
Q ss_pred hcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828 316 LINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 316 ~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
.....++.++||||+|+..|+.+++++|++.| ..++..++|++++|...|+.++.+.
T Consensus 311 ~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 311 PTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp SCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC------------------
T ss_pred ccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHHHH
Confidence 11223456889999999999999999999865 6788999999999999988777664
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=8e-28 Score=240.18 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=144.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHh--
Q 039828 148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAA-- 225 (626)
Q Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa-- 225 (626)
+.+++|.|+..|+.+.++.+++.+........+..|.||||+|+..|+.+++++|++.+..+++..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 456777788888888887777654322234455678888888888888888888888875577777888888888887
Q ss_pred ---hCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHH
Q 039828 226 ---SVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS 302 (626)
Q Consensus 226 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i 302 (626)
..++.++++.|++.+.+ ....+..|.||||+|+..|+.+++++|+++|++++. +|..|+||||+|+.+|+.++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~---~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV---QDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHH
T ss_pred HhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC---CCCCCCCHHHHHHHCCCHHH
Confidence 55777888888887765 566777788888888888888888888887655443 47778888888888888888
Q ss_pred HHHHHH-cCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828 303 VTHILE-ASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347 (626)
Q Consensus 303 ~~~Ll~-~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g 347 (626)
+++|++ .| ++++.+|.+|+||||+|+..|+.+++++|+++.
T Consensus 232 v~~Ll~~~g----ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 232 AGLLLAVPS----CDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHTSTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHhcCC----CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 888887 55 677778888888888888888888888887765
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=236.83 Aligned_cols=186 Identities=23% Similarity=0.253 Sum_probs=169.1
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhcCCc-cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHH--
Q 039828 183 GKSPVKVAIELQKLGLLKMMHDKQPA-LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLAS-- 259 (626)
Q Consensus 183 g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-- 259 (626)
..+++|.|+..++.+.++.+++.... .++..|.+|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 45678899999999999999876522 378899999999999999999999999999998558999999999999999
Q ss_pred ---hcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCC
Q 039828 260 ---ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGH 336 (626)
Q Consensus 260 ---~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~ 336 (626)
..++.++++.|++.|..+. ..+..|+||||+|+.+|+.+++++|++.| +++|.+|.+|+||||+|+..|+
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~~---~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g----ad~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNINA---KASQAGQTALMLAVSHGRVDVVKALLACE----ADVNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTC
T ss_pred HhhhhhhHHHHHHHHHcCCCcc---ccCCCCCCHHHHHHHcCCHHHHHHHHhCC----CCCCCCCCCCCCHHHHHHHCCC
Confidence 6689999999999875443 45888999999999999999999999998 8899999999999999999999
Q ss_pred HHHHHHHhh-CCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828 337 YFVAVILGK-DGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 337 ~~iv~~Ll~-~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
.+++++|++ .| ++++.+|.+|+||+++|+..++.+++++
T Consensus 229 ~~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~ 268 (276)
T 4hbd_A 229 KEIAGLLLAVPS-CDISLTDRDGSTALMVALDAGQSEIASM 268 (276)
T ss_dssp HHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhcCC-CCCcCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999 66 9999999999999999999988877776
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=4.8e-26 Score=210.24 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=133.1
Q ss_pred CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM 92 (626)
Q Consensus 13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~ 92 (626)
+.||||.||..|+ .+ +++++++.++..++.+|..|+||||+|+..|+.++|++|+++|+++ +.
T Consensus 2 ~~~~L~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~ 64 (172)
T 3v30_A 2 DSLSIHQLAAQGE---LD--QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP------------HI 64 (172)
T ss_dssp --CCHHHHHHTTC---HH--HHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------TC
T ss_pred chhhHHHHHHcCC---HH--HHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------hh
Confidence 5689999999999 88 9999999998888999999999999999999999999999988765 34
Q ss_pred hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828 93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP 172 (626)
Q Consensus 93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (626)
.|..|.||||+|+. .++ .+++++|++++.+++ ..|..|.||||+|+..|+.+++++|++.+.
T Consensus 65 ~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 126 (172)
T 3v30_A 65 LAKERESALSLAST-------GGY----------TDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGA 126 (172)
T ss_dssp CCTTCCCHHHHHHH-------TTC----------HHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hcccCCCHHHHHHH-------CCC----------HHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 77888899999988 888 888888888888877 677888888888888888888888888766
Q ss_pred CCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCch
Q 039828 173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTP 220 (626)
Q Consensus 173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 220 (626)
. ....+..|.||||+|+..|+.+++++|++++ ......+..|.||
T Consensus 127 ~--~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~~p 171 (172)
T 3v30_A 127 D--LTTEADSGYTPMDLAVALGYRKVQQVIENHI-LKLFQSNLVPADP 171 (172)
T ss_dssp C--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HHHSCC-------
T ss_pred C--ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH-HHHhcccCCCCCC
Confidence 3 3345556777777777777777777777776 4444555555554
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.8e-26 Score=217.21 Aligned_cols=158 Identities=23% Similarity=0.191 Sum_probs=106.3
Q ss_pred cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA 260 (626)
Q Consensus 181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 260 (626)
..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+.
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 110 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSII 110 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHHHH-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhc-cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHH
Confidence 34556666666666666666666554 44555666677777777777777777777776665 56666677777777777
Q ss_pred cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHH
Q 039828 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVA 340 (626)
Q Consensus 261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv 340 (626)
.|+.+++++|+++|.+++ .+|..|+||||+|+..++.+++++|++.| ++++.+|..|+||||+|+..|+.+++
T Consensus 111 ~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 111 FGYSEMSYFLLEHGANVN---DRNLEGETPLIVASKYGRSEIVKKLLELG----ADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HTCHHHHHHHHHTTCCSS---CCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 777777777777654443 34666777777777777777777777776 66677777777777777777777777
Q ss_pred HHHhhCC
Q 039828 341 VILGKDG 347 (626)
Q Consensus 341 ~~Ll~~g 347 (626)
++|++.+
T Consensus 184 ~~Ll~~~ 190 (192)
T 2rfm_A 184 KIFTEVR 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 7776654
No 61
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=7.4e-29 Score=256.91 Aligned_cols=265 Identities=11% Similarity=0.094 Sum_probs=184.7
Q ss_pred cccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCccc--ccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchh
Q 039828 8 ITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFL--ITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQID 85 (626)
Q Consensus 8 ~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~--l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~ 85 (626)
..+.+++||||+||..|+ .+ ++++|++.+... .+..|..|+||||+||..|+.++|++|+++|++..
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~---~e--~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~------ 155 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGC---SS--ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI------ 155 (376)
T ss_dssp HHTCCHHHHHHHHHHHCC---HH--HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH------
T ss_pred HcCCCcCCHHHHHHHcCC---HH--HHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------
Confidence 345677899999999999 88 999999987621 23456778999999999999999999999996421
Q ss_pred hhHHHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCccc-ccCCCCCcHHHHHH-HcCCHHH
Q 039828 86 VKFLMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASY-LMNVDCKSPLYLAV-ESKNEDI 163 (626)
Q Consensus 86 ~~~~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~-~~~~~g~tpL~~A~-~~g~~~~ 163 (626)
..+..+.+ .||||+|+. .|+ .+++++|+++++++.. ..|..|.||||+|+ ..|+.++
T Consensus 156 ---~~~i~~~~-~TpLh~Aa~-------~G~----------~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ei 214 (376)
T 2aja_A 156 ---MAMIQAEN-YHAFRLAAE-------NGH----------LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214 (376)
T ss_dssp ---HHHHSHHH-HHHHHHHHH-------TTC----------HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred ---ccccCCCC-CCHHHHHHH-------CCC----------HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHH
Confidence 11122233 999999999 999 9999999999998763 26778999999999 9999999
Q ss_pred HHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHH----------
Q 039828 164 LEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGV---------- 233 (626)
Q Consensus 164 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v---------- 233 (626)
+++|++.+. .|.||||.|+..|+.+++++|++.+ ..++..| ++++.|+..|+.+++
T Consensus 215 v~~Ll~~ga---------~~~taL~~Aa~~g~~evv~lL~~~g-a~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~ 280 (376)
T 2aja_A 215 INFLLDCPV---------MLAYAEIHEFEYGEKYVNPFIARHV-NRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFY 280 (376)
T ss_dssp HHHHTTSHH---------HHHHHHHCTTTTTTTTHHHHHHHHH-HHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHH
T ss_pred HHHHHhCCC---------ccchHHHHHHHCCCHHHHHHHHhcC-ccccccc----HHHHHHHHCCChhhhcHHhhhhhHH
Confidence 999999543 3789999999999999999999988 4444433 488899998887743
Q ss_pred --HHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCC--CcccccCCCchHHHHHHHcCChHHHHHHHHc
Q 039828 234 --RFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPH--PNELFNNKGQNILHVAAKKGRDVSVTHILEA 309 (626)
Q Consensus 234 --~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~--~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~ 309 (626)
+.|+..+. .+..+.+++|++.+.... ........+.|+||+|+..|+.+++++|++.
T Consensus 281 ~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~ 341 (376)
T 2aja_A 281 MLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 341 (376)
T ss_dssp HHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred HHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC
Confidence 34444321 123566677765221000 0011234567899999999999999999987
Q ss_pred CCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828 310 SDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG 344 (626)
Q Consensus 310 ~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll 344 (626)
+ ..+|..|+|++.+|-..|+.++++.-+
T Consensus 342 ~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 342 P-------SVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp H-------HHHHSCC--------------------
T ss_pred h-------HHHHHHHHhccccccccccccHHHHHH
Confidence 4 456788999999999999998877544
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.4e-26 Score=217.88 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=148.4
Q ss_pred cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc
Q 039828 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ 288 (626)
Q Consensus 209 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~ 288 (626)
..+.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++ .+|..|+
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~ 102 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---TKDFSGK 102 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT---CCCTTSC
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCC
Confidence 3567899999999999999999999999999887 78889999999999999999999999999886554 4588999
Q ss_pred hHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHh
Q 039828 289 NILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQ 368 (626)
Q Consensus 289 t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~ 368 (626)
||||+|+..++.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|++.| ++++.+|..|.||+++|...
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~ 177 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHG----ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIF 177 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTT----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHh
Confidence 9999999999999999999998 889999999999999999999999999999999 99999999999999999999
Q ss_pred cccccccc
Q 039828 369 YAKIIPEF 376 (626)
Q Consensus 369 ~~~~i~~~ 376 (626)
++.+++++
T Consensus 178 ~~~~~v~~ 185 (192)
T 2rfm_A 178 GRQEVIKI 185 (192)
T ss_dssp TCHHHHHH
T ss_pred CcHHHHHH
Confidence 88777765
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=6.2e-26 Score=208.39 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=122.0
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhc
Q 039828 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN 261 (626)
Q Consensus 182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 261 (626)
.|.||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||.|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 3667777777777777777777776 55677777888888888888888888888887766 666777888888888888
Q ss_pred CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828 262 GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341 (626)
Q Consensus 262 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~ 341 (626)
|+.+++++|+++|.+++ .+|..|+||||+|+..++.+++++|++.| ++++.+|..|+||||+|+..|+.++++
T Consensus 80 ~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVN---EYDWNGGTPLLYAVHGNHVKCVKMLLESG----ADPTIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp TCHHHHHHHHHHTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHCCCCCC---cCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 88888888888765544 34777888888888888888888888877 677778888888888888888888888
Q ss_pred HHhhCC
Q 039828 342 ILGKDG 347 (626)
Q Consensus 342 ~Ll~~g 347 (626)
+|++++
T Consensus 153 ~L~~~~ 158 (167)
T 3v31_A 153 VIESHL 158 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=4.5e-26 Score=211.96 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=152.8
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhc
Q 039828 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN 261 (626)
Q Consensus 182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 261 (626)
.+.++||.|+..|+.++++.|++.++.+++..|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 5788999999999999999999998788999999999999999999999999999999988 888899999999999999
Q ss_pred CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828 262 GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341 (626)
Q Consensus 262 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~ 341 (626)
|+.+++++|+++|.+++ .+|..|+||||+|+..++.+++++|++.| ++++.+|..|+||||+|+..++.++++
T Consensus 83 ~~~~~v~~Ll~~g~~~~---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQDQVAEDLVANG----ALVSICNKYGEMPVDKAKAPLRELLRE 155 (179)
T ss_dssp TCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCC---ccCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCcchhccCCCCcHHHHHHHHHHHHHH
Confidence 99999999999876554 45889999999999999999999999998 889999999999999999999999999
Q ss_pred HHhhCCCCcccccccCC
Q 039828 342 ILGKDGRAESDIINFYG 358 (626)
Q Consensus 342 ~Ll~~g~~d~~~~n~~g 358 (626)
+|++.| ++++..+..+
T Consensus 156 ~L~~~g-~~~~~~~~~~ 171 (179)
T 3f6q_A 156 RAEKMG-QNLNRIPYKD 171 (179)
T ss_dssp HHHHTT-CCCSCBCCCC
T ss_pred HHHHhh-cCcccCCccc
Confidence 999999 9988776554
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=6.2e-26 Score=207.15 Aligned_cols=157 Identities=22% Similarity=0.231 Sum_probs=134.5
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC
Q 039828 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262 (626)
Q Consensus 183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 262 (626)
..||||.|+..|+.+++++|++.+ ..++..|..|.||||+|+. |+.+++++|++.+++ ++..|..|.||||.|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCC-CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 567888888888888888888877 5677888899999999988 999999999998887 7788889999999999999
Q ss_pred ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhh-cccCCCCCCCHHHHHHHhCCHHHHH
Q 039828 263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKL-INEMDDDGNTPLHLAALYGHYFVAV 341 (626)
Q Consensus 263 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~-in~~d~~G~TpLhlA~~~~~~~iv~ 341 (626)
+.+++++|+++|.+++ .+|..|+||||+|+.+|+.+++++|++.+ .+ ++.+|..|+||||+|+..|+.++++
T Consensus 82 ~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 154 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVN---IEDNEGNLPLHLAAKEGHLRVVEFLVKHT----ASNVGHRNHKGDTACDLARLYGRNEVVS 154 (162)
T ss_dssp CHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHHS----CCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHcc----CCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 9999999999775544 45888999999999999999999999988 44 6888999999999999999999999
Q ss_pred HHhhCCCCc
Q 039828 342 ILGKDGRAE 350 (626)
Q Consensus 342 ~Ll~~g~~d 350 (626)
+|+++| +|
T Consensus 155 ~Ll~~G-Ad 162 (162)
T 1ihb_A 155 LMQANG-AG 162 (162)
T ss_dssp HHHHTC---
T ss_pred HHHHhC-CC
Confidence 999988 54
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=1.2e-25 Score=206.96 Aligned_cols=158 Identities=24% Similarity=0.234 Sum_probs=126.9
Q ss_pred cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA 260 (626)
Q Consensus 181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 260 (626)
..+.++|+.|+..|+.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||.|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence 34566778888888888888887776 56677788888888888888888888888888776 67778888888888888
Q ss_pred cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHH
Q 039828 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVA 340 (626)
Q Consensus 261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv 340 (626)
.|+.+++++|+++|.+++ .+|..|+||||+|+.+++.+++++|++.| ++++.+|..|+||||+|+..++.+++
T Consensus 90 ~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAMFGHLEIVEVLLKNG----ADVNAQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp TTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 888888888888765543 34778888888888888888888888887 77888888888888888888888888
Q ss_pred HHHhhCC
Q 039828 341 VILGKDG 347 (626)
Q Consensus 341 ~~Ll~~g 347 (626)
++|++.|
T Consensus 163 ~~L~~~G 169 (169)
T 2y1l_E 163 EILQKLN 169 (169)
T ss_dssp HHHHTC-
T ss_pred HHHHHcC
Confidence 8888764
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=1e-25 Score=206.99 Aligned_cols=152 Identities=23% Similarity=0.262 Sum_probs=142.4
Q ss_pred CCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828 216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA 295 (626)
Q Consensus 216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~ 295 (626)
.|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|.+++. +|..|+||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL---LGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC---cCCCCCcHHHHHH
Confidence 578999999999999999999999877 888999999999999999999999999998765544 4889999999999
Q ss_pred HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccc
Q 039828 296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPE 375 (626)
Q Consensus 296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~ 375 (626)
.+++.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++.| ++++.+|..|+||+|+|...++.++++
T Consensus 78 ~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 78 SKGYTDIVKMLLDCG----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp HHTCHHHHHHHHHHT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHCC----CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 999999999999998 889999999999999999999999999999999 999999999999999999998877766
Q ss_pred c
Q 039828 376 F 376 (626)
Q Consensus 376 ~ 376 (626)
+
T Consensus 153 ~ 153 (167)
T 3v31_A 153 V 153 (167)
T ss_dssp H
T ss_pred H
Confidence 5
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=9.5e-26 Score=206.71 Aligned_cols=157 Identities=24% Similarity=0.281 Sum_probs=126.5
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhc
Q 039828 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASAN 261 (626)
Q Consensus 182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 261 (626)
.+.++||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHc
Confidence 4667777777777777777777766666777777888888888888888888888888777 777788888888888888
Q ss_pred CChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHH
Q 039828 262 GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAV 341 (626)
Q Consensus 262 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~ 341 (626)
|+.+++++|+++|.+++. +|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||+|+. ++.++++
T Consensus 86 ~~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 86 GHYEVAELLVKHGAVVNV---ADLWKFTPLHEAAAKGKYEICKLLLQHG----ADPTKKNRDGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp TCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred CcHHHHHHHHhCCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCcccCCCCCChhHhHhc-CChHHHH
Confidence 888888888887655543 4778888888888888888888888887 7788888888888888766 8888888
Q ss_pred HHhhCC
Q 039828 342 ILGKDG 347 (626)
Q Consensus 342 ~Ll~~g 347 (626)
+|++.|
T Consensus 158 ~L~~~g 163 (165)
T 3twr_A 158 LLRGDA 163 (165)
T ss_dssp HHHTC-
T ss_pred HHhhcc
Confidence 888776
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.4e-28 Score=232.88 Aligned_cols=200 Identities=13% Similarity=0.021 Sum_probs=157.8
Q ss_pred HHHHHhCCCCCc-cccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCc
Q 039828 165 EYILEALPVNDD-CDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDS 243 (626)
Q Consensus 165 ~~Ll~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 243 (626)
+.|++.+..... ...+..+.||||.|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~- 79 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN- 79 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 456665554332 233455777888888888888888888887 57788889999999999999999999999999887
Q ss_pred ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHH--HHcCChHHHHHHHHcCCcchhhcccCC
Q 039828 244 VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVA--AKKGRDVSVTHILEASDLTDKLINEMD 321 (626)
Q Consensus 244 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A--~~~~~~~i~~~Ll~~~~~~~~~in~~d 321 (626)
++..|..|.||||+|+..|+.+++++|+++|.+++.. .+..|+||||+| +..++.+++++|++.| ++++.+|
T Consensus 80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~--~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g----a~~~~~~ 153 (229)
T 2vge_A 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT--TLSDGATAFEKCDPYREGYADCATYLADVE----QSMGLMN 153 (229)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC--CSSTTCCTGGGCCTTSTTHHHHHHHHHHHH----HHTTTSG
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--cCCCCCCHHHHHHHHhcChHHHHHHHHHcC----CCccccc
Confidence 7888889999999999999999999999977655443 146899999999 8999999999999997 8899999
Q ss_pred CCCCCHHHHHHHhCCHHHHHHHhhCCCCc--ccccccCCCCHHHHHHHhcccccccc
Q 039828 322 DDGNTPLHLAALYGHYFVAVILGKDGRAE--SDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 322 ~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d--~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
..|.||+|.++.... .++|++.| ++ ++.+|.+|+||||+|+..|+.++++.
T Consensus 154 ~~~~~~l~~~~~~~~---~~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 154 SGAVYALWDYSAEFG---DELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp GGEEEESSCBCCSST---TBCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred CCchHHHHHHhhccc---cccCcccc-ccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 999999986555443 35777777 66 67889999999999999998888764
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=2.3e-25 Score=201.47 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=72.4
Q ss_pred CHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCCh
Q 039828 185 SPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCV 264 (626)
Q Consensus 185 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~ 264 (626)
++|+.|+..|+.+++++|++.+. ..+ .|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC-CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcChH
Confidence 44555555555555555555442 111 344455555555555555555555554444 444444555555555555555
Q ss_pred HHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHH
Q 039828 265 PVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVIL 343 (626)
Q Consensus 265 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~L 343 (626)
+++++|+++|.+++ .+|..|+||||+|+.+++.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYG----ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 55555554433322 22444555555555555555555555544 44444455555555555555555554443
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=5.2e-25 Score=199.70 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=128.5
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcC
Q 039828 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANG 262 (626)
Q Consensus 183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 262 (626)
+.||||.|+..|+.++++.|++..+.+++..|..|.||||+ +..|+.+++++|++.+++ ++..|..|.||||.|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence 35788888888888888888887555777888888899998 888889999999888877 7778888899999999999
Q ss_pred ChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHH
Q 039828 263 CVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVI 342 (626)
Q Consensus 263 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~ 342 (626)
+.+++++|+++|.+++ .+|..|+||||+|+.+|+.+++++|++. .+++.+|.+|+||||+|+..|+.+++++
T Consensus 80 ~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEGHTAVVSFLAAE-----SDLHRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp CHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHHTCHHHHHHHHTT-----SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHcCCCCC---CcCCCCCcHHHHHHHhChHHHHHHHHhc-----cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 9999999988775544 3477889999999999999999988876 5677888889999999999999999998
Q ss_pred HhhC
Q 039828 343 LGKD 346 (626)
Q Consensus 343 Ll~~ 346 (626)
|+++
T Consensus 152 Ll~~ 155 (156)
T 1bd8_A 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8764
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=6.6e-25 Score=198.43 Aligned_cols=150 Identities=24% Similarity=0.215 Sum_probs=111.9
Q ss_pred CchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHc
Q 039828 218 NTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKK 297 (626)
Q Consensus 218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~ 297 (626)
.+|||.|+..|+.+++++|++.+.+ .. .+..|.||||.|+..|+.+++++|++.|.+++ .+|..|+||||+|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHc
Confidence 5677777777788888777777765 33 46677778888877777788777777664443 3467777788888777
Q ss_pred CChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhccccccccc
Q 039828 298 GRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEFS 377 (626)
Q Consensus 298 ~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~~ 377 (626)
++.+++++|++.| ++++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||+|+|...++.++++++
T Consensus 78 ~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 78 GHANIVEVLLKHG----ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 7777777777776 667777777778888887777777887777777 77777777777888887777777666553
No 73
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=1.6e-24 Score=199.36 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=144.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhh
Q 039828 143 LMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMH 222 (626)
Q Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 222 (626)
.....+.++|+.|+..|+.+++++|++.+.. ....+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLR 85 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHH
Confidence 3456778999999999999999999999773 4456678999999999999999999999998 778889999999999
Q ss_pred HHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHH
Q 039828 223 WAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVS 302 (626)
Q Consensus 223 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i 302 (626)
+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|+++|.+++ .+|..|+||||+|+.+++.++
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~ 161 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN---AQDKFGKTAFDISIDNGNEDL 161 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHhCCHHH
Confidence 99999999999999999988 88899999999999999999999999999886654 458899999999999999999
Q ss_pred HHHHHHcC
Q 039828 303 VTHILEAS 310 (626)
Q Consensus 303 ~~~Ll~~~ 310 (626)
+++|++.|
T Consensus 162 ~~~L~~~G 169 (169)
T 2y1l_E 162 AEILQKLN 169 (169)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHcC
Confidence 99999864
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=1.5e-25 Score=205.37 Aligned_cols=155 Identities=23% Similarity=0.246 Sum_probs=140.4
Q ss_pred cCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHH
Q 039828 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292 (626)
Q Consensus 213 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh 292 (626)
.|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|+++|.+++ .+|..|+||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC---ccCCCCCCHHH
Confidence 467889999999999999999999997776678888999999999999999999999999876554 45889999999
Q ss_pred HHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccc
Q 039828 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKI 372 (626)
Q Consensus 293 ~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~ 372 (626)
+|+..++.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|+++| ++++.+|.+|+||+|+|.+ ++.+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~ 154 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHG----AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTD 154 (165)
T ss_dssp HHHHTTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHH
T ss_pred HHHHcCcHHHHHHHHhCC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChH
Confidence 999999999999999998 889999999999999999999999999999999 9999999999999999876 5555
Q ss_pred cccc
Q 039828 373 IPEF 376 (626)
Q Consensus 373 i~~~ 376 (626)
+.++
T Consensus 155 i~~~ 158 (165)
T 3twr_A 155 IQDL 158 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 75
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=1.3e-24 Score=198.32 Aligned_cols=156 Identities=20% Similarity=0.197 Sum_probs=92.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhC
Q 039828 148 CKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASV 227 (626)
Q Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 227 (626)
..||||.|+..|+.+++++|++.+. +....+..|.||||.|+. |+.+++++|++.+ .+++.+|..|.||||+|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCC--CccccCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHc
Confidence 3456666666666666666665544 223334455666666655 6666666666655 44555566666666666666
Q ss_pred CCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHH
Q 039828 228 DHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHIL 307 (626)
Q Consensus 228 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll 307 (626)
|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|..+ .+.+|..|+||||+|+.+++.+++++|+
T Consensus 81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 5556666666666666666666666666654332 2334566666666666666666666666
Q ss_pred HcC
Q 039828 308 EAS 310 (626)
Q Consensus 308 ~~~ 310 (626)
++|
T Consensus 158 ~~G 160 (162)
T 1ihb_A 158 ANG 160 (162)
T ss_dssp HTC
T ss_pred HhC
Confidence 665
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.4e-27 Score=231.36 Aligned_cols=202 Identities=15% Similarity=0.084 Sum_probs=164.6
Q ss_pred HHhhcCCCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCc
Q 039828 131 RSLVSEDPNAS--YLMNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPA 208 (626)
Q Consensus 131 ~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 208 (626)
+.|++++.+.. ...+.++.||||+|+..|+.+++++|++.+.. ....+..|.||||+|+..|+.+++++|++.+ .
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a 78 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLITAG-A 78 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-C
Confidence 45666665554 23456778899999999999999999999874 4456678999999999999999999999998 7
Q ss_pred cccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHH--HhcCChHHHHHHHhccCCCCCcccccC
Q 039828 209 LLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLA--SANGCVPVMGEFLEKENMPHPNELFNN 285 (626)
Q Consensus 209 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~~v~~Ll~~g~~~~~~~~~d~ 285 (626)
+++..|..|.||||+|+..|+.+++++|++.+++ ++..+ ..|.||||+| +..|+.+++++|+++|.+++. +|.
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~---~~~ 154 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL---MNS 154 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT---SGG
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc---ccC
Confidence 8899999999999999999999999999999998 55554 7999999999 999999999999999876655 478
Q ss_pred CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHh
Q 039828 286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILG 344 (626)
Q Consensus 286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll 344 (626)
.|.|+++.++..... ++|++.|. +.+++.+|.+|+||||+|+..|+.++|+.++
T Consensus 155 ~~~~~l~~~~~~~~~---~~ll~~ga--~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 155 GAVYALWDYSAEFGD---ELSFREGE--SVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp GEEEESSCBCCSSTT---BCCBCTTC--EEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred CchHHHHHHhhcccc---ccCccccc--cccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 899999866554433 56666662 2348889999999999999999999887543
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=1.1e-24 Score=202.44 Aligned_cols=162 Identities=16% Similarity=0.136 Sum_probs=101.6
Q ss_pred cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH
Q 039828 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL 89 (626)
Q Consensus 10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 89 (626)
++++.++||.||..|+ .+ ++++|++.++.+++.+|..|+||||+||..|+.+++++|++.|++++
T Consensus 2 ~~~~~~~l~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------- 66 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGN---AV--AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN---------- 66 (179)
T ss_dssp -----CCHHHHHHHTC---HH--HHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred CHHHHHHHHHHHHcCC---HH--HHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------
Confidence 3567777888888887 77 78888877666677777788888888888888888888887776542
Q ss_pred HHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 039828 90 MEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILE 169 (626)
Q Consensus 90 l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (626)
.+|..|.||||+|+. .++ .+++++|++++++++ ..|..|.||||+|+..|+.+++++|++
T Consensus 67 --~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 126 (179)
T 3f6q_A 67 --VMNRGDDTPLHLAAS-------HGH----------RDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVA 126 (179)
T ss_dssp --CCCTTCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred --CcCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 355566666666666 555 666666666655554 445555555555555555555555555
Q ss_pred hCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCC
Q 039828 170 ALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPD 242 (626)
Q Consensus 170 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 242 (626)
.+. +++.+|..|.||||+|+..++.+++++|++.+++
T Consensus 127 ~ga------------------------------------~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 127 NGA------------------------------------LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp TTC------------------------------------CSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCC------------------------------------CcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 443 3444555566666666666666666666665555
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=2.8e-24 Score=194.86 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=111.3
Q ss_pred CCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHHh
Q 039828 13 GNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLMEM 92 (626)
Q Consensus 13 g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~~ 92 (626)
|.|+||.|+..|+ .+ ++++|++..+.+++..|..|+||||+ +..|+.+++++|++.|+++ +.
T Consensus 2 ~~~~L~~A~~~g~---~~--~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~------------~~ 63 (156)
T 1bd8_A 2 AGDRLSGAAARGD---VQ--EVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP------------NV 63 (156)
T ss_dssp HHHHHHHHHHHTC---HH--HHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT------------TC
T ss_pred cchHHHHHHHhCC---HH--HHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC------------CC
Confidence 5678888888888 77 88888887544577788888888888 8888888888888887754 23
Q ss_pred hccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 039828 93 KNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEALP 172 (626)
Q Consensus 93 ~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (626)
+|..|.||||+|+. .++ .+++++|++++.+++ ..|..|+||||+|+..|+.+++++|++. .
T Consensus 64 ~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~ 124 (156)
T 1bd8_A 64 QDTSGTSPVHDAAR-------TGF----------LDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-S 124 (156)
T ss_dssp CCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-S
T ss_pred cCCCCCCHHHHHHH-------cCc----------HHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-c
Confidence 66777777777777 777 777777777777766 5666777777777777777777777766 3
Q ss_pred CCCccccccCCCCHHHHHHHhCCHHHHHHHHh
Q 039828 173 VNDDCDAKLEGKSPVKVAIELQKLGLLKMMHD 204 (626)
Q Consensus 173 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 204 (626)
+....+..|.||||.|+..|+.+++++|++
T Consensus 125 --~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 125 --DLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp --CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred --CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 333444556666666666666666666664
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=3.6e-26 Score=223.15 Aligned_cols=206 Identities=12% Similarity=0.084 Sum_probs=133.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHH
Q 039828 145 NVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWA 224 (626)
Q Consensus 145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 224 (626)
+..|.||||.|+..|+.+.++.|++++...+ .+..|.||||.|+..|+.++++.|++.+ .+++.+|..|.||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNA 77 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc---cCchhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence 3468899999999999999999999877443 2356889999999999999999999888 57888889999999999
Q ss_pred hhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCc-hHHHHH--HHcCChH
Q 039828 225 ASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQ-NILHVA--AKKGRDV 301 (626)
Q Consensus 225 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~ 301 (626)
+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++.. +..|. ||||+| +..|+.+
T Consensus 78 ~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~---~~~~~~t~l~~a~~~~~g~~~ 153 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM---TYSDMQTAADKCEEMEEGYTQ 153 (239)
T ss_dssp HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---CSSSCCCHHHHCCSSSTTCCC
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee---cCCCCcchHHHHHHhhhccHH
Confidence 999999999999998887 7888889999999999999999999999977665543 55555 999998 7788899
Q ss_pred HHHHHHHcCCcchhhcccC---------CCCCCCHHHHHHHhCCHHHHHHHhhCCCCc------ccccccCCCCHHHHH
Q 039828 302 SVTHILEASDLTDKLINEM---------DDDGNTPLHLAALYGHYFVAVILGKDGRAE------SDIINFYGQTAYDIA 365 (626)
Q Consensus 302 i~~~Ll~~~~~~~~~in~~---------d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d------~~~~n~~g~tpl~la 365 (626)
++++|++.+ ++++.. |..+.++++++...|. +++.|.+.+ .+ ....+..|.+|.++.
T Consensus 154 ~~~~Ll~~~----a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~-~~~~~Ww~~~~~~~~G~~P~~yv 225 (239)
T 1ycs_B 154 CSQFLYGVQ----EKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED-EDEIEWWWARLNDKEGYVPRNLL 225 (239)
T ss_dssp HHHHHHHHH----HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT-TSCSSEEEEEETTEEEEEEGGGE
T ss_pred HHHHHHHhh----hcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC-CCCCCEEEEEECCcEEEeehHHe
Confidence 999999887 444443 6678888888887776 344444433 22 234556666666554
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=1.8e-25 Score=218.13 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=131.0
Q ss_pred cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHh
Q 039828 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASA 260 (626)
Q Consensus 181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 260 (626)
..|.||||.|+..++.+.++.|++++ ..++. +..|.||||.|+..|+.+++++|++.+++ ++..|..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g-~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG-MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC-CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 35899999999999999999999998 55553 47789999999999999999999999987 88899999999999999
Q ss_pred cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC-CHHHHH--HHhCCH
Q 039828 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN-TPLHLA--ALYGHY 337 (626)
Q Consensus 261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~-TpLhlA--~~~~~~ 337 (626)
.|+.+++++|+++|.+++ .+|..|+||||+|+.+|+.+++++|+++| ++++.+|..|. ||||+| +..|+.
T Consensus 80 ~g~~~~v~~Ll~~ga~~~---~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~~~~t~l~~a~~~~~g~~ 152 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVESG----AAVFAMTYSDMQTAADKCEEMEEGYT 152 (239)
T ss_dssp HTCHHHHHHHHHHTCCTT---CCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred cCCHHHHHHHHHcCCCCC---ccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCcceecCCCCcchHHHHHHhhhccH
Confidence 999999999999886654 45889999999999999999999999998 88999998887 999999 788999
Q ss_pred HHHHHHhhCCCCccccc---------ccCCCCHHHHHHHhcc
Q 039828 338 FVAVILGKDGRAESDII---------NFYGQTAYDIAEQQYA 370 (626)
Q Consensus 338 ~iv~~Ll~~g~~d~~~~---------n~~g~tpl~la~~~~~ 370 (626)
+++++|++.+ ++++.. +..++++.+++.+.|.
T Consensus 153 ~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 153 QCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999999998 887766 5567888887766554
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=8.1e-24 Score=191.93 Aligned_cols=145 Identities=22% Similarity=0.140 Sum_probs=109.2
Q ss_pred cccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCch-
Q 039828 211 LIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN- 289 (626)
Q Consensus 211 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t- 289 (626)
...+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+ .|+.+++++|+++|.+++ .+|..|+|
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~---~~d~~g~tt 80 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN---CADPATLTR 80 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC---CCCTTTCCC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC---CcCCCCCcH
Confidence 34577888899999999999999999988877 7778888999999885 888999999998775544 45888998
Q ss_pred HHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHH
Q 039828 290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365 (626)
Q Consensus 290 ~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la 365 (626)
|||+|+.+|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||.+-+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAG----ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHT----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHHHHCCCHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence 999999999999999999998 888999999999999999999999999999999 99999999999998744
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=2.8e-23 Score=183.69 Aligned_cols=133 Identities=22% Similarity=0.192 Sum_probs=113.6
Q ss_pred ccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCC-
Q 039828 208 ALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNK- 286 (626)
Q Consensus 208 ~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~- 286 (626)
.+++..|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+. |+.+++++|+++|.+++. +|..
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~---~~~~~ 77 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC---ADPAT 77 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC---CBTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC---cCCCC
Confidence 45677888888999999999999999999988877 77788888999999988 999999999987765543 4777
Q ss_pred CchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828 287 GQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE 350 (626)
Q Consensus 287 g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d 350 (626)
|+||||+|+..++.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G-ad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAG----ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT-GD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTC----CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH-CC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 899999999999999999999887 778889999999999999999999999998877 43
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1.4e-23 Score=195.79 Aligned_cols=161 Identities=12% Similarity=-0.002 Sum_probs=118.7
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhcCCccccccC-CCCCchhhHHhhCCCH----HHHHHhhhcCCCcccccCCCCChHHHH
Q 039828 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLIQD-EQMNTPMHWAASVDHL----EGVRFLYEINPDSVLQKNEEGLYPFHL 257 (626)
Q Consensus 183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 257 (626)
+.++|+.|+..|+.+.++.+++.+. +..+ ..|+||||+|+..|+. +++++|++.|++ ++.+|..|+||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHH
Confidence 4566777777777777777776652 2233 5678888888887764 478888888877 77778888888888
Q ss_pred HHhcCC------hHHHHHHHhccCCCCCcccccCCCc-hHHHHHHHcCC-----hHHHHHHHH-cCCcchhhcccCCCCC
Q 039828 258 ASANGC------VPVMGEFLEKENMPHPNELFNNKGQ-NILHVAAKKGR-----DVSVTHILE-ASDLTDKLINEMDDDG 324 (626)
Q Consensus 258 A~~~g~------~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~i~~~Ll~-~~~~~~~~in~~d~~G 324 (626)
|+..|+ .+++++|+++|++++. +|..|+ ||||+|+..+. .+++++|++ .| +++|.+|..|
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~---~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g----ad~~~~d~~G 154 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADITA---LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG----LQLLIKDKWG 154 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCSSS---CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT----CCTTCCCTTS
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCCCc---cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC----CCCcccCCCC
Confidence 888776 4678888887765544 477788 88888887443 457888888 77 7888888888
Q ss_pred CCHHHHHHHhCCHHHHHHHhhCCCCcccccc
Q 039828 325 NTPLHLAALYGHYFVAVILGKDGRAESDIIN 355 (626)
Q Consensus 325 ~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n 355 (626)
+||||+|+..++.+++++|.+.. .+.++++
T Consensus 155 ~TpL~~A~~~~~~~~v~~L~~~~-~~~~~~~ 184 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKMMEDYI-KKYNLKE 184 (186)
T ss_dssp CCHHHHHHTTTCHHHHHHHHHHH-HHHTCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHHH-HHHhccc
Confidence 88888888888888888887765 4444443
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=2.7e-22 Score=177.34 Aligned_cols=131 Identities=19% Similarity=0.119 Sum_probs=118.0
Q ss_pred ccccccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccch
Q 039828 5 FKTITSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQI 84 (626)
Q Consensus 5 ~~~~~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 84 (626)
..+.+|.+|.||||+|+..|+ .+ ++++|++.+.+ ++.+|..|+||||+|+. |+.+++++|++++++++
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~----- 71 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQ---VE--TVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN----- 71 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTC---HH--HHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-----
T ss_pred CccCCCCCCccHHHHHHHcCC---HH--HHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-----
Confidence 457788999999999999999 88 99999998765 88899999999999999 99999999999988763
Q ss_pred hhhHHHHhhccC-CCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHH
Q 039828 85 DVKFLMEMKNVR-GNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDI 163 (626)
Q Consensus 85 ~~~~~l~~~~~~-g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (626)
.+|.. |.||||+|+. .++ .+++++|++++++++ ..|..|.||||+|+..|+.++
T Consensus 72 -------~~~~~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~ 126 (136)
T 1d9s_A 72 -------CADPATLTRPVHDAAR-------EGF----------LDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDI 126 (136)
T ss_dssp -------CCBTTTTBCHHHHHHH-------HTC----------HHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHH
T ss_pred -------CcCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHH
Confidence 47888 9999999999 888 999999999999887 778899999999999999999
Q ss_pred HHHHHHhCC
Q 039828 164 LEYILEALP 172 (626)
Q Consensus 164 v~~Ll~~~~ 172 (626)
+++|+++++
T Consensus 127 ~~~Ll~~Ga 135 (136)
T 1d9s_A 127 ARYLHAATG 135 (136)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHcCC
Confidence 999998765
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=3.9e-22 Score=180.79 Aligned_cols=143 Identities=9% Similarity=0.001 Sum_probs=113.3
Q ss_pred cccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCCh-HHHH
Q 039828 179 AKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLY-PFHL 257 (626)
Q Consensus 179 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-pLh~ 257 (626)
.+..|.||||.|+..|+.+++++|++.+ .+++..|..|.||||+|+ .|+.+++++|++.+++ ++.+|..|.| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHH
Confidence 3456899999999999999999999887 678888999999999985 8999999999999988 8889999999 9999
Q ss_pred HHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHH
Q 039828 258 ASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLA 331 (626)
Q Consensus 258 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA 331 (626)
|+..|+.+++++|+++|.+++. +|..|+||||+|+.+++.+++++|++.| ++++.+|..|.||.+-+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~---~d~~g~tpl~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLAEELGHRDVARYLRAAA----GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSC---CCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHhCHHHHHHHHHHcC----CCCCccCcCcCcccccC
Confidence 9999999999999998866544 5889999999999999999999999998 88999999999998744
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=5.3e-23 Score=191.93 Aligned_cols=149 Identities=13% Similarity=0.024 Sum_probs=131.2
Q ss_pred CCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHHHhcCCh----HHHHHHHhccCCCCCcccccCCCchHH
Q 039828 217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLASANGCV----PVMGEFLEKENMPHPNELFNNKGQNIL 291 (626)
Q Consensus 217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~d~~g~t~L 291 (626)
++++|+.|++.|+.+.++.++..+.+ ..+ ..|+||||+|+.+|+. +++++|+++|++++. +|..|+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~---~d~~g~TpL 79 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS---RTKEGTTLF 79 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC---CCTTCCCTH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC---CCCCCCcHH
Confidence 56899999999999999999987654 334 6799999999999975 599999998876655 489999999
Q ss_pred HHHHHcCC------hHHHHHHHHcCCcchhhcccCCCCCC-CHHHHHHHhC-----CHHHHHHHhh-CCCCcccccccCC
Q 039828 292 HVAAKKGR------DVSVTHILEASDLTDKLINEMDDDGN-TPLHLAALYG-----HYFVAVILGK-DGRAESDIINFYG 358 (626)
Q Consensus 292 h~A~~~~~------~~i~~~Ll~~~~~~~~~in~~d~~G~-TpLhlA~~~~-----~~~iv~~Ll~-~g~~d~~~~n~~g 358 (626)
|+|+..++ .+++++|++.| +++|.+|..|+ ||||+|+..+ +.+++++|++ .| ++++.+|..|
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~G----adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G 154 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKG----ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWG 154 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTT----CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTS
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCC----CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCC
Confidence 99999987 57899999998 99999999999 9999999954 4569999999 88 9999999999
Q ss_pred CCHHHHHHHhcccccccc
Q 039828 359 QTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 359 ~tpl~la~~~~~~~i~~~ 376 (626)
+||||+|.+.++.+++++
T Consensus 155 ~TpL~~A~~~~~~~~v~~ 172 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKM 172 (186)
T ss_dssp CCHHHHHHTTTCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHH
Confidence 999999999988777665
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=2.6e-21 Score=168.04 Aligned_cols=126 Identities=40% Similarity=0.527 Sum_probs=103.7
Q ss_pred CCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828 216 QMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA 295 (626)
Q Consensus 216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~ 295 (626)
+|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|++.|.+++ .+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc---ccCCCCCcHHHHHH
Confidence 477888888888888888888888776 66778888888888888888888888888765443 44778888888888
Q ss_pred HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCc
Q 039828 296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAE 350 (626)
Q Consensus 296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d 350 (626)
..++.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus 77 ~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G-ad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AY 126 (126)
T ss_dssp HTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CC
T ss_pred HcChHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CC
Confidence 888888888888887 778888888899999999888999999888887 53
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=1.4e-21 Score=172.79 Aligned_cols=127 Identities=26% Similarity=0.279 Sum_probs=105.1
Q ss_pred cCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHH
Q 039828 213 QDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILH 292 (626)
Q Consensus 213 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh 292 (626)
....+.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|.+++ .+|..|+||||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~t~L~ 85 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN---AVDAIGFTPLH 85 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTCCCHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCCHHH
Confidence 345677888888888888888888888877 77788888888888888888888888888765543 34778889999
Q ss_pred HHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828 293 VAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347 (626)
Q Consensus 293 ~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g 347 (626)
+|+..++.+++++|++.+ ++++.+|.+|+||||+|+..++.+++++|++.|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHG----ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcC----CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999887 778888889999999999999999999888765
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=7.1e-21 Score=165.22 Aligned_cols=125 Identities=26% Similarity=0.426 Sum_probs=109.5
Q ss_pred CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME 91 (626)
Q Consensus 12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~ 91 (626)
+|+||||+|+..|+ .+ ++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.++++ +
T Consensus 1 ~g~t~L~~A~~~~~---~~--~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~ 62 (126)
T 1n0r_A 1 NGRTPLHLAARNGH---LE--VVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------N 62 (126)
T ss_dssp CCCCHHHHHHHHTC---HH--HHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------T
T ss_pred CCccHHHHHHHcCc---HH--HHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC------------c
Confidence 58999999999999 88 99999998776 7888899999999999999999999999988765 3
Q ss_pred hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 039828 92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYILEAL 171 (626)
Q Consensus 92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (626)
.+|..|.||||+|+. .++ .+++++|+++++++. ..|..|.|||++|+..|+.+++++|++++
T Consensus 63 ~~~~~g~t~l~~A~~-------~~~----------~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 63 AKDKNGRTPLHLAAR-------NGH----------LEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred ccCCCCCcHHHHHHH-------cCh----------HHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 477889999999998 888 899999999988887 67888999999999999999999999887
Q ss_pred C
Q 039828 172 P 172 (626)
Q Consensus 172 ~ 172 (626)
+
T Consensus 125 a 125 (126)
T 1n0r_A 125 A 125 (126)
T ss_dssp C
T ss_pred C
Confidence 5
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.85 E-value=2.7e-21 Score=170.85 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=98.3
Q ss_pred ccCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhH
Q 039828 9 TSPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKF 88 (626)
Q Consensus 9 ~~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~ 88 (626)
....|.|+||+||..|+ .+ ++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 10 ~~~~~~t~l~~A~~~g~---~~--~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------- 73 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQ---DD--EVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV---------- 73 (136)
T ss_dssp --CHHHHHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------
T ss_pred ccccccHHHHHHHHhCC---HH--HHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence 44567888888888888 77 88888887765 7778888888888888888888888888887754
Q ss_pred HHHhhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828 89 LMEMKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL 168 (626)
Q Consensus 89 ~l~~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (626)
+.+|..|.||||+|+. .++ .+++++|+++++++. ..|.+|.||||+|+..|+.+++++|+
T Consensus 74 --~~~d~~g~t~L~~A~~-------~~~----------~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll 133 (136)
T 2jab_A 74 --NAVDAIGFTPLHLAAF-------IGH----------LEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQ 133 (136)
T ss_dssp --TCCCTTCCCHHHHHHH-------HTC----------HHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred --CcCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 3467778888888887 777 888888888887776 66777888888888888888888887
Q ss_pred Hh
Q 039828 169 EA 170 (626)
Q Consensus 169 ~~ 170 (626)
+.
T Consensus 134 ~~ 135 (136)
T 2jab_A 134 KL 135 (136)
T ss_dssp HC
T ss_pred Hc
Confidence 64
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=2.1e-21 Score=171.80 Aligned_cols=123 Identities=26% Similarity=0.378 Sum_probs=92.7
Q ss_pred ccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC
Q 039828 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN 325 (626)
Q Consensus 246 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~ 325 (626)
.+|..|.||||.|+..|+.+++++|++.|.+++ .+|..|+||||+|+..++.+++++|++.+ ++++.+|..|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~ 77 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQHK----ALVNTTGYQND 77 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCGGGC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CcccCcCCCCC
Confidence 466777777777777777777777777654443 34677788888888888888888888776 66777788888
Q ss_pred CHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHHhcccccccc
Q 039828 326 TPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQQYAKIIPEF 376 (626)
Q Consensus 326 TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~~~~~~i~~~ 376 (626)
||||+|+..++.+++++|++.| ++++.+|..|.||+|+|...+..++..+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~ 127 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLL 127 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSC
T ss_pred CHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhh
Confidence 8888888888888888888777 7888888888888888777666555554
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=4.3e-21 Score=169.71 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=111.1
Q ss_pred ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHH
Q 039828 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNIL 291 (626)
Q Consensus 212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~L 291 (626)
.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++ .+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN---TTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc---CcCCCCCCHH
Confidence 5788899999999999999999999998887 77889999999999999999999999999775543 4588899999
Q ss_pred HHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828 292 HVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347 (626)
Q Consensus 292 h~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g 347 (626)
|+|+..++.+++++|++.| ++++.+|..|+||||+|+..+..+++++|.+.+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYG----ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 9999999999999999998 788999999999999999988888888776654
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.83 E-value=9.3e-21 Score=176.60 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=97.4
Q ss_pred cCCCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHH
Q 039828 10 SPSGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFL 89 (626)
Q Consensus 10 ~~~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~ 89 (626)
+.+|+||||+|+..|+ .+ ++++|++ +. +++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 41 ~~~g~t~L~~A~~~g~---~~--~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------- 103 (183)
T 3deo_A 41 VSEYETPWWTAARKAD---EQ--ALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD---------- 103 (183)
T ss_dssp HHHHHHHHHHHHHTTC---HH--HHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------
T ss_pred CCCCCCHHHHHHHcCC---HH--HHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence 4567777777777777 66 7777777 43 367777777777777777777777777777776542
Q ss_pred HHhhc-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 039828 90 MEMKN-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVESKNEDILEYIL 168 (626)
Q Consensus 90 l~~~~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (626)
.++ ..|+||||+|+. .++ .+++++|++++++++ ..|..|+||||+|+..++.
T Consensus 104 --~~~~~~g~tpL~~A~~-------~~~----------~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------- 156 (183)
T 3deo_A 104 --HRDMRGGLTALHMAAG-------YVR----------PEVVEALVELGADIE-VEDERGLTALELAREILKT------- 156 (183)
T ss_dssp --CCCSSSSCCHHHHHHH-------TTC----------HHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT-------
T ss_pred --cCCCCCCCCHHHHHHh-------cCc----------HHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC-------
Confidence 244 667777777777 777 777777777777766 6677777777777653221
Q ss_pred HhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhc
Q 039828 169 EALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDK 205 (626)
Q Consensus 169 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 205 (626)
..+.++|++|+..|+.++++.|.++
T Consensus 157 ------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 ------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 1356677777777777777776543
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=1.7e-20 Score=162.53 Aligned_cols=112 Identities=24% Similarity=0.230 Sum_probs=89.9
Q ss_pred CCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCH
Q 039828 248 NEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTP 327 (626)
Q Consensus 248 d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~Tp 327 (626)
+..|.||||.|+..|+.++++.|++.|.++ +.+|..|+||||+|+..++.+++++|++.+ +++|.+|..|+||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~tp 76 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKG----ADINAPDKHHITP 76 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTT----CCTTCCCTTSCCH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCcCCCCCCCH
Confidence 456778888888888888888888866443 345778888888888888888888888887 7788888888888
Q ss_pred HHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHHHH
Q 039828 328 LHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIAEQ 367 (626)
Q Consensus 328 LhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la~~ 367 (626)
||+|+..++.+++++|+++| ++++.+|.+|+||+|+|..
T Consensus 77 L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 77 LLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCC
Confidence 88888888888888888887 8888888888888888843
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.82 E-value=1.5e-20 Score=183.83 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=58.2
Q ss_pred CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME 91 (626)
Q Consensus 12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~ 91 (626)
+|+||||+||..|+ .+ ++++|++ +. +++.+|..|+||||+||..|+.++|++|+++|++++
T Consensus 44 ~g~t~L~~A~~~g~---~~--~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------ 104 (244)
T 3ui2_A 44 EYETPWWTAARKAD---EQ--ALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------ 104 (244)
T ss_dssp HHHHHHHHHHTTTC---HH--HHHHTTT-TC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred CCCCHHHHHHHcCC---HH--HHHHHHc-CC-CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence 45555555555555 55 5555555 32 255555555555555555555555555555555432
Q ss_pred hhc-cCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCCcccccCCCCCcHHHHHHH
Q 039828 92 MKN-VRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPNASYLMNVDCKSPLYLAVE 157 (626)
Q Consensus 92 ~~~-~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 157 (626)
.++ ..|.||||+|+. .++ .+++++|++++++++ ..|..|.||||+|+.
T Consensus 105 ~~~~~~g~t~L~~A~~-------~g~----------~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 105 HRDMRGGLTALHMAAG-------YVR----------PEVVEALVELGADIE-VEDERGLTALELARE 153 (244)
T ss_dssp CCCSSSCCCHHHHHHH-------TTC----------HHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred cCCCCCCCCHHHHHHH-------cCC----------HHHHHHHHHCCCCCC-CCCCCCCcHHHHHHH
Confidence 133 445555555555 555 555555555555554 445555555555553
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=7.6e-21 Score=183.05 Aligned_cols=138 Identities=18% Similarity=0.114 Sum_probs=110.7
Q ss_pred ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhc-cCCCCCcccccCCCchH
Q 039828 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEK-ENMPHPNELFNNKGQNI 290 (626)
Q Consensus 212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~ 290 (626)
..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++. |.+ .+.+|..|+||
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~tp 143 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDTA 143 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCCH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCCH
Confidence 3567889999999999999999999999887 788899999999999999999999999986 544 44568999999
Q ss_pred HHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCC
Q 039828 291 LHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYG 358 (626)
Q Consensus 291 Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g 358 (626)
||+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..++.++++.|++.+ ++.+..|.+|
T Consensus 144 L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~ 206 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKG----ARTDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED 206 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHT----CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHcC----CCCccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence 99999999999999999998 889999999999999999999999999999998 7777776654
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=1.6e-20 Score=174.97 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHHHh
Q 039828 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLASA 260 (626)
Q Consensus 182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~ 260 (626)
.|.||||.|+..|+.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|++.+++ ++..+ ..|.||||+|+.
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHh
Confidence 34455555555555555555554 2 34444455555555555555555555555554444 33333 445555555555
Q ss_pred cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHH
Q 039828 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAK 296 (626)
Q Consensus 261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~ 296 (626)
.|+.+++++|+++|.+++ .+|..|+||||+|+.
T Consensus 120 ~~~~~~v~~Ll~~ga~~~---~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 120 YVRPEVVEALVELGADIE---VEDERGLTALELARE 152 (183)
T ss_dssp TTCHHHHHHHHHHTCCTT---CCCTTSCCHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCCc---CCCCCCCCHHHHHHH
Confidence 555555555554443332 224445555555543
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=184.07 Aligned_cols=142 Identities=16% Similarity=0.127 Sum_probs=120.7
Q ss_pred CCCCchhhHHhhCCCHHHHHHhhhcCCCcccc------cCCCCChHHHHHHhc---CChHHHHHHHhccCCCCCcccccC
Q 039828 215 EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQ------KNEEGLYPFHLASAN---GCVPVMGEFLEKENMPHPNELFNN 285 (626)
Q Consensus 215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~ 285 (626)
..+.++|+.|+..|+.+.++.|++.+++ ++. .+..|.||||+|+.. |+.+++++|+++|++++ .+|.
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn---~~d~ 224 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD---AKAA 224 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT---CCCT
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC---CCCC
Confidence 3345789999999999999999999988 544 688999999999997 89999999999886554 4589
Q ss_pred CCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHHHH
Q 039828 286 KGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYDIA 365 (626)
Q Consensus 286 ~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~la 365 (626)
.|+||||+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..++.+++++|++.| ++ .|.||||+|
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A 293 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGR----ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVD 293 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTT----CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC--
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHH
Confidence 9999999999999999999999998 889999999999999999999999999999988 44 689999999
Q ss_pred HHhccc
Q 039828 366 EQQYAK 371 (626)
Q Consensus 366 ~~~~~~ 371 (626)
++.|+.
T Consensus 294 ~~~g~~ 299 (301)
T 2b0o_E 294 YSWVIS 299 (301)
T ss_dssp ------
T ss_pred HhcCCc
Confidence 987653
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=5.2e-20 Score=159.46 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=95.0
Q ss_pred CCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHH
Q 039828 214 DEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHV 293 (626)
Q Consensus 214 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~ 293 (626)
+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|.+++ .+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN---APDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT---CCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCCHHHH
Confidence 46678899999999999999999998877 77888889999999999999999999998775543 458889999999
Q ss_pred HHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHh
Q 039828 294 AAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY 334 (626)
Q Consensus 294 A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~ 334 (626)
|+..++.+++++|++.+ ++++.+|.+|+||||+|...
T Consensus 80 A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKG----ADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHhCCH
Confidence 99999999999999987 77888999999999998543
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=182.53 Aligned_cols=140 Identities=17% Similarity=0.102 Sum_probs=118.1
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhcCCccccc------cCCCCCchhhHHhhC---CCHHHHHHhhhcCCCcccccCCCCCh
Q 039828 183 GKSPVKVAIELQKLGLLKMMHDKQPALLLI------QDEQMNTPMHWAASV---DHLEGVRFLYEINPDSVLQKNEEGLY 253 (626)
Q Consensus 183 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t 253 (626)
..++|+.|+..|+.+.++.|++.+ .+++. .|..|.||||+|+.. |+.+++++|++.+++ ++..|..|.|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCC
Confidence 456799999999999999999888 45555 688999999999987 899999999999988 8889999999
Q ss_pred HHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHH
Q 039828 254 PFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAAL 333 (626)
Q Consensus 254 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~ 333 (626)
|||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..++.+++++|++.+ ++ .|.||||+|+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~---~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g----a~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVG---TVNEAGETALDIARKKHHKECEELLEQAQ----AG------TFAFPLHVDYS 295 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCS---CCCTTSCCHHHHHHHHTCHHHHHHHHHHH----HH------TTSSCCC----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC---CcCCCCCCHHHHHHHcCCHHHHHHHHHhc----CC------CCCChhHHHHh
Confidence 9999999999999999999887665 45899999999999999999999999987 33 58999999999
Q ss_pred hCCH
Q 039828 334 YGHY 337 (626)
Q Consensus 334 ~~~~ 337 (626)
+|+.
T Consensus 296 ~g~~ 299 (301)
T 2b0o_E 296 WVIS 299 (301)
T ss_dssp ----
T ss_pred cCCc
Confidence 8864
No 101
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.81 E-value=6.9e-20 Score=179.02 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=114.1
Q ss_pred cCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccC-CCCChHHHHHH
Q 039828 181 LEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKN-EEGLYPFHLAS 259 (626)
Q Consensus 181 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~ 259 (626)
..|.||||.|+..|+.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|++++++ ++..+ ..|.||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence 357788888888888888888888 4 67788888889999999999999999999988887 55555 77899999999
Q ss_pred hcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHH
Q 039828 260 ANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFV 339 (626)
Q Consensus 260 ~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~i 339 (626)
..|+.+++++|+++|++++ .+|..|+||||+|+..++ +..+.||||+|+..|+.++
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~---~~d~~g~t~l~~A~~~~~---------------------~~~~~~~l~~a~~~g~~~i 175 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIE---VEDERGLTALELAREILK---------------------TTPKGNPMQFGRRIGLEKV 175 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTT---CCCTTCCCHHHHHHHHHT---------------------TCCCSSHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHHHh---------------------ccCCCCHHHHHHHcChHHH
Confidence 9999999999998776554 458889999999986321 2468899999999999999
Q ss_pred HHHHhhCC
Q 039828 340 AVILGKDG 347 (626)
Q Consensus 340 v~~Ll~~g 347 (626)
+++|++.+
T Consensus 176 v~~L~~~~ 183 (244)
T 3ui2_A 176 INVLEGQV 183 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998764
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=4.5e-19 Score=176.51 Aligned_cols=192 Identities=18% Similarity=0.181 Sum_probs=144.2
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCccccccCCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhH
Q 039828 144 MNVDCKSPLYLAVESKNEDILEYILEALPVNDDCDAKLEGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHW 223 (626)
Q Consensus 144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 223 (626)
.|..+.++++++...|+..+.+++....+........ .+.... .....-..+++...........+....++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~-~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN-PGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCC-TTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCC-CCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 5778899999999999987776665443321111111 111221 11112222333333322222222234578999
Q ss_pred HhhCCCHHHHHHhhhcCCCc-----ccccCCCCChHHHHHHhc---CChHHHHHHHhccCCCCCcccccCCCchHHHHHH
Q 039828 224 AASVDHLEGVRFLYEINPDS-----VLQKNEEGLYPFHLASAN---GCVPVMGEFLEKENMPHPNELFNNKGQNILHVAA 295 (626)
Q Consensus 224 Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~ 295 (626)
|+..|+.+.++.+++.+.+. .+..+..|.||||+|+.. |+.+++++|+++|++++ .+|..|+||||+|+
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in---~~d~~g~TpLh~A~ 213 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD---KQTGKGSTALHYCC 213 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT---CCCTTCCCHHHHHH
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc---ccCCCCCCHHHHHH
Confidence 99999999999999998874 233488899999999999 89999999999886654 45889999999999
Q ss_pred HcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCC
Q 039828 296 KKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDG 347 (626)
Q Consensus 296 ~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g 347 (626)
.+|+.+++++|++.| ++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus 214 ~~g~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 214 LTDNAECLKLLLRGK----ASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcC----CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999998 889999999999999999999999999999988
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.77 E-value=4.1e-19 Score=170.84 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCchhhHHhhCCCHHHHHHhhhc-CCCcccccCCCCChHHHHHHh
Q 039828 182 EGKSPVKVAIELQKLGLLKMMHDKQPALLLIQDEQMNTPMHWAASVDHLEGVRFLYEI-NPDSVLQKNEEGLYPFHLASA 260 (626)
Q Consensus 182 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~ 260 (626)
.|.||||.|+..|+.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++. +.+ ++..|..|.||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHHH
Confidence 4677777777777777777777766 55667777777888888888888888888777 555 67777778888888888
Q ss_pred cCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcC
Q 039828 261 NGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEAS 310 (626)
Q Consensus 261 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~ 310 (626)
.|+.+++++|+++|++++ .+|..|+||||+|+..++.++++.|++.+
T Consensus 150 ~~~~~~v~~Ll~~ga~~~---~~~~~g~t~l~~A~~~~~~~~l~~l~~~~ 196 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTD---LRNIEKKLAFDMATNAACASLLKKKQGTD 196 (222)
T ss_dssp HTCHHHHHHHHHHTCCSC---CCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred cCCHHHHHHHHHcCCCCc---cccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence 888888888887765544 34777888888888777777777777776
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.77 E-value=1.2e-17 Score=166.31 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=96.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCCCC----ccccccCCCCHHHHHHHh---CCHHHHHHHHhcCCccccccCCCCCchh
Q 039828 149 KSPLYLAVESKNEDILEYILEALPVND----DCDAKLEGKSPVKVAIEL---QKLGLLKMMHDKQPALLLIQDEQMNTPM 221 (626)
Q Consensus 149 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 221 (626)
.++|+.|+..|+.+.++.+++.+.... ....+..|.||||.|+.. |+.+++++|++.+ .+++.+|..|.|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHH
Confidence 468888899999888888888876432 223355678888888887 7788888888777 66777777888888
Q ss_pred hHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCC
Q 039828 222 HWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENM 276 (626)
Q Consensus 222 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~ 276 (626)
|+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 210 h~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 888888888888888887777 777777888888888888888888888876654
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.76 E-value=1.6e-18 Score=178.66 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=115.7
Q ss_pred cCCCCCchhhHHhhC-CCHHHHHHhhhcCCCcccccC--CCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCch
Q 039828 213 QDEQMNTPMHWAASV-DHLEGVRFLYEINPDSVLQKN--EEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQN 289 (626)
Q Consensus 213 ~d~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t 289 (626)
.+..+.|+||.|+.. |+.++++.|++.+++ ++..+ ..|.||||+|+..|+.+++++|+++|.+++ .+|..|+|
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn---~~d~~G~T 270 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN---QADSAGRG 270 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCC
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC---CCCCCCCC
Confidence 345567899999999 999999999999988 67677 899999999999999999999999876554 45899999
Q ss_pred HHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCC--CcccccccCCCCHHHHHHH
Q 039828 290 ILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGR--AESDIINFYGQTAYDIAEQ 367 (626)
Q Consensus 290 ~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~--~d~~~~n~~g~tpl~la~~ 367 (626)
|||+|+..|+.+++++|++.| ++++.+|.+|+||||+|+..++.+++++|+..+. .+....+..+.|+++++..
T Consensus 271 pLh~A~~~g~~~~v~~LL~~G----ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRG----ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHcCcHHHHHHHHHCc----CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 999999999999999999998 8899999999999999999999999999997652 3445667788999999876
Q ss_pred h
Q 039828 368 Q 368 (626)
Q Consensus 368 ~ 368 (626)
.
T Consensus 347 ~ 347 (368)
T 3jue_A 347 F 347 (368)
T ss_dssp -
T ss_pred H
Confidence 5
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=4.1e-18 Score=184.24 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=111.1
Q ss_pred CCchhhHHhhCCCHHHHHHhhhcCCCccccc------CCCCChHHHHHHh---cCChHHHHHHHhccCCCCCcccccCCC
Q 039828 217 MNTPMHWAASVDHLEGVRFLYEINPDSVLQK------NEEGLYPFHLASA---NGCVPVMGEFLEKENMPHPNELFNNKG 287 (626)
Q Consensus 217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~~v~~Ll~~g~~~~~~~~~d~~g 287 (626)
..+.||.|+..|+.+.++.|++.+++ ++.. |..|.||||+|+. .|+.+++++|+++|++++. +|..|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~---~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA---KAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTC---CCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCc---cCCCC
Confidence 34679999999999999999999887 5544 7889999999966 8999999999998866544 58899
Q ss_pred chHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCccccc
Q 039828 288 QNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDII 354 (626)
Q Consensus 288 ~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~ 354 (626)
+||||+|+.+|+.+++++|++.| +++|.+|.+|+||||+|+..|+.+++++|+++| ++++..
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~ 269 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGR----ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AGTFAF 269 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTC----CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC-C-----
T ss_pred CcHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 99999999999999999999998 889999999999999999999999999999999 888764
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.74 E-value=7.9e-18 Score=137.76 Aligned_cols=91 Identities=38% Similarity=0.526 Sum_probs=74.4
Q ss_pred CCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHH
Q 039828 250 EGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLH 329 (626)
Q Consensus 250 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLh 329 (626)
+|+||||+|+..|+.+++++|++.|.+++ .+|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n---~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t~l~ 73 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLH 73 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHH
Confidence 47788888888888888888888765443 45778888888888888888888888887 778888888888888
Q ss_pred HHHHhCCHHHHHHHhhCC
Q 039828 330 LAALYGHYFVAVILGKDG 347 (626)
Q Consensus 330 lA~~~~~~~iv~~Ll~~g 347 (626)
+|+..|+.+++++|++.|
T Consensus 74 ~A~~~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 74 LAARNGHLEVVKLLLEAG 91 (93)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 888888888888888887
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.73 E-value=3.2e-18 Score=146.15 Aligned_cols=109 Identities=28% Similarity=0.373 Sum_probs=91.7
Q ss_pred ccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCC
Q 039828 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGN 325 (626)
Q Consensus 246 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~ 325 (626)
.+|.+|.||||.|+..|+.+++++|+++|.++ +.+|..|+||||+|+..++.+++++|++.+ ++++.+|..|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~d~~g~ 76 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKG----ADVNARSKDGN 76 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTT----CCTTCCCTTCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC----CCCcccCCCCC
Confidence 46778888888888888888888888876543 345788899999999999999999999887 77888999999
Q ss_pred CHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHH
Q 039828 326 TPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAY 362 (626)
Q Consensus 326 TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl 362 (626)
||||+|+..++.+++++|+++| +++|.++..|.||-
T Consensus 77 tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 77 TPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH 112 (115)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred CHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence 9999999999999999999998 99999999998874
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.73 E-value=1.1e-17 Score=137.00 Aligned_cols=93 Identities=28% Similarity=0.432 Sum_probs=84.8
Q ss_pred CCCcHHHHHHhcCCCccccHHHHHHHHhhCcccccccccCCCcHHHHHHHcCCHHHHHHHHHccccCCCccchhhhHHHH
Q 039828 12 SGNTLLHIAAAGSIRNHENMAMATTLARKYPFLITMQNSKGDTPLHVAARDGMLQTAKILVDCAKRMTSSSQIDVKFLME 91 (626)
Q Consensus 12 ~g~t~LH~Aa~~g~~~~~~~~~v~~Ll~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~l~ 91 (626)
+|+||||+|+..|+ .+ ++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++|+++ +
T Consensus 1 ~g~t~L~~A~~~~~---~~--~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------------~ 62 (93)
T 1n0q_A 1 NGRTPLHLAARNGH---LE--VVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------N 62 (93)
T ss_dssp --CCHHHHHHHHTC---HH--HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------T
T ss_pred CCCcHHHHHHHcCC---HH--HHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------C
Confidence 58999999999999 88 99999999876 8999999999999999999999999999999876 3
Q ss_pred hhccCCCCHHHHHHHhhhhhhccCCCCCCCCCCcHHHHHHHhhcCCCC
Q 039828 92 MKNVRGNTALHEALNALQDAKKDKNKPKEDGVTSLDSLARSLVSEDPN 139 (626)
Q Consensus 92 ~~~~~g~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~~ 139 (626)
.+|.+|+||||+|+. .++ .+++++|+++|++
T Consensus 63 ~~d~~g~t~l~~A~~-------~~~----------~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 63 AKDKNGRTPLHLAAR-------NGH----------LEVVKLLLEAGAY 93 (93)
T ss_dssp CCCTTSCCHHHHHHH-------TTC----------HHHHHHHHHTTCC
T ss_pred ccCCCCCCHHHHHHH-------cCC----------HHHHHHHHHcCCC
Confidence 488999999999999 999 9999999998864
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=1.5e-17 Score=171.39 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHh-CCHHHHHHHHhcCCccccccC--CCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHH
Q 039828 182 EGKSPVKVAIEL-QKLGLLKMMHDKQPALLLIQD--EQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLA 258 (626)
Q Consensus 182 ~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 258 (626)
.+.|+||.|+.. ++.++++.|++.+ .+++..| ..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHG-ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcC-CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence 455677777777 7777777777776 5566666 6777777777777777777777777776 667777777888888
Q ss_pred HhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhC
Q 039828 259 SANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYG 335 (626)
Q Consensus 259 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~ 335 (626)
+..|+.+++++|+++|++++ .+|..|+||||+|+..++.+++++|++.+.. .......+..+.|+++++....
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~---~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLG---ARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred HHcCcHHHHHHHHHCcCCCC---CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHHHHHH
Confidence 77777888877777665543 3477777888888877777787777766422 2444455667778877776553
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.71 E-value=3.4e-17 Score=177.05 Aligned_cols=136 Identities=17% Similarity=0.120 Sum_probs=105.0
Q ss_pred CCHHHHHHHhCCHHHHHHHHhcCCcccccc------CCCCCchhhHHhh---CCCHHHHHHhhhcCCCcccccCCCCChH
Q 039828 184 KSPVKVAIELQKLGLLKMMHDKQPALLLIQ------DEQMNTPMHWAAS---VDHLEGVRFLYEINPDSVLQKNEEGLYP 254 (626)
Q Consensus 184 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 254 (626)
.+.||.|+..|+.+.++.|++.+ .+++.. |..|.||||+|+. .|+.+++++|++++++ ++.+|..|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcH
Confidence 35788888888888888888888 555555 7889999999955 8899999999999887 88889999999
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHh
Q 039828 255 FHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALY 334 (626)
Q Consensus 255 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~ 334 (626)
||+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|++.| ++++. ||+|.+...
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~---~d~~g~tpl~~A~~~~~~~~~~~Ll~~g----a~~~~------~~~h~~~~~ 277 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGT---VNEAGETALDIARKKHHKECEELLEQAQ----AGTFA------FPLHVDYSW 277 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSC---CCTTCCCHHHHHHHTTCHHHHHHHHHTC----C-------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHhC----CCCCC------Ccceeeccc
Confidence 9999999999999999998866544 4888999999999999999999999988 44443 677776543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.69 E-value=3e-17 Score=140.05 Aligned_cols=109 Identities=26% Similarity=0.291 Sum_probs=88.8
Q ss_pred ccCCCCCchhhHHhhCCCHHHHHHhhhcCCCcccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHH
Q 039828 212 IQDEQMNTPMHWAASVDHLEGVRFLYEINPDSVLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNIL 291 (626)
Q Consensus 212 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~L 291 (626)
.+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|.+++ .+|..|+|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN---ARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT---CCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc---ccCCCCCCHH
Confidence 4678888888888888888888888888877 77788888888888888888888888888765543 4578888999
Q ss_pred HHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHH
Q 039828 292 HVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPL 328 (626)
Q Consensus 292 h~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpL 328 (626)
|+|+..++.+++++|++.| +++|.++..|.||-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~g----a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKG----ADVNARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTS----SSHHHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcC----CCCCcCCccccccc
Confidence 9999888899999998888 78888888888773
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.60 E-value=1.2e-15 Score=128.99 Aligned_cols=86 Identities=30% Similarity=0.411 Sum_probs=46.1
Q ss_pred cCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCCCCCHHHHHHHhCCHHHHHHHhhCCCCcccccccCCCCHHH
Q 039828 284 NNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDDGNTPLHLAALYGHYFVAVILGKDGRAESDIINFYGQTAYD 363 (626)
Q Consensus 284 d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~G~TpLhlA~~~~~~~iv~~Ll~~g~~d~~~~n~~g~tpl~ 363 (626)
|.+|+|+||+|+..|+.+++++|++.+ .++|.+|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||+|
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANG----ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFD 95 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHH
Confidence 445555555555555555555555554 445555555555555555555555555555555 555555555555555
Q ss_pred HHHHhcccccc
Q 039828 364 IAEQQYAKIIP 374 (626)
Q Consensus 364 la~~~~~~~i~ 374 (626)
+|+..++.+++
T Consensus 96 ~A~~~~~~~~~ 106 (110)
T 2zgd_A 96 ISIDNGNEDLA 106 (110)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHcCCHHHH
Confidence 55555444433
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.59 E-value=3.7e-15 Score=125.91 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=74.4
Q ss_pred ccccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcccccCCCchHHHHHHHcCChHHHHHHHHcCCcchhhcccCCCC
Q 039828 244 VLQKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNELFNNKGQNILHVAAKKGRDVSVTHILEASDLTDKLINEMDDD 323 (626)
Q Consensus 244 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~i~~~Ll~~~~~~~~~in~~d~~ 323 (626)
....|.+|.||||.|+..|+.+++++|++.|.++ +.+|..|+||||+|+.+|+.+++++|++.| ++++.+|..
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g----a~~~~~d~~ 89 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAG----ADVXAQDKF 89 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTT
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccccC
Confidence 4456778888888888888888888888876544 344788889999999989999999998887 778888889
Q ss_pred CCCHHHHHHHhCCHHHHHHH
Q 039828 324 GNTPLHLAALYGHYFVAVIL 343 (626)
Q Consensus 324 G~TpLhlA~~~~~~~iv~~L 343 (626)
|+||||+|+..++.+++++|
T Consensus 90 g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 90 GKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp SCCHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHh
Confidence 99999999999999988876
No 115
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.88 E-value=35 Score=25.53 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039828 571 IVVMAAIQGWILLFRLPR 588 (626)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~ 588 (626)
..++..++++++++.++.
T Consensus 11 ~~Iv~gvi~gilliGlll 28 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAA 28 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334444555444444433
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=26.19 E-value=66 Score=31.72 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=33.0
Q ss_pred ccCCCCChHHHHHHhcCChHHHHHHHhccCCCCCcc-cccCCCchHHHHHHHcCChHH
Q 039828 246 QKNEEGLYPFHLASANGCVPVMGEFLEKENMPHPNE-LFNNKGQNILHVAAKKGRDVS 302 (626)
Q Consensus 246 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~d~~g~t~Lh~A~~~~~~~i 302 (626)
..|..|...+......+..+..+.+++.- .+.... ..++.|...+.-+...+..+.
T Consensus 212 ~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l-~~~~~~Ls~~k~gs~Vvek~l~~~~~~~ 268 (351)
T 3gvo_A 212 VQDQYGNYVIQHVLEHGRPEDKSKIVSEI-RGKVLALSQHKFASNVVEKCVTHASRAE 268 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHTT-TTCHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred CCCchHHHHHHHHHHhCchhhHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCHHH
Confidence 46777888888888887777766666521 111111 134556666666666655443
Done!