Query 039831
Match_columns 545
No_of_seqs 353 out of 3784
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.4E-60 1.2E-64 518.7 21.2 529 2-543 105-797 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-44 3.6E-49 416.4 33.6 362 49-429 185-691 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-30 7.4E-35 255.4 7.4 210 53-264 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.8E-18 3.9E-23 199.6 14.4 189 300-500 118-317 (968)
5 PLN00113 leucine-rich repeat r 99.8 4.3E-18 9.4E-23 196.5 16.2 243 289-544 58-336 (968)
6 KOG0444 Cytoskeletal regulator 99.7 8.5E-20 1.8E-24 184.3 -3.9 227 300-535 55-310 (1255)
7 KOG0444 Cytoskeletal regulator 99.7 9.8E-19 2.1E-23 176.7 -3.2 218 300-533 32-262 (1255)
8 KOG4194 Membrane glycoprotein 99.6 1.4E-15 3.1E-20 153.1 6.8 230 300-543 102-344 (873)
9 KOG0617 Ras suppressor protein 99.6 4.1E-17 8.9E-22 140.2 -3.7 153 346-509 29-187 (264)
10 KOG4194 Membrane glycoprotein 99.6 3.2E-16 7E-21 157.7 1.5 227 301-539 174-439 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 5.2E-17 1.1E-21 156.8 -6.0 120 302-427 185-305 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 1.9E-16 4E-21 153.0 -6.2 211 303-531 71-290 (565)
13 KOG0617 Ras suppressor protein 99.5 1.9E-16 4E-21 136.2 -5.7 158 368-535 28-192 (264)
14 PLN03210 Resistant to P. syrin 99.4 1.2E-12 2.6E-17 152.5 14.2 219 298-531 587-885 (1153)
15 PRK15370 E3 ubiquitin-protein 99.4 3.8E-12 8.2E-17 139.4 12.1 201 298-532 197-404 (754)
16 KOG4237 Extracellular matrix p 99.3 2E-13 4.4E-18 132.0 0.4 208 323-544 68-350 (498)
17 PRK15370 E3 ubiquitin-protein 99.3 7E-12 1.5E-16 137.3 12.2 73 351-429 221-293 (754)
18 PRK15387 E3 ubiquitin-protein 99.3 1E-11 2.2E-16 135.3 11.1 161 351-536 283-465 (788)
19 KOG0618 Serine/threonine phosp 99.2 6.9E-13 1.5E-17 140.8 -1.2 236 299-544 218-480 (1081)
20 KOG0618 Serine/threonine phosp 99.2 9.6E-13 2.1E-17 139.7 -5.4 210 323-545 220-435 (1081)
21 KOG0532 Leucine-rich repeat (L 99.2 1.8E-12 3.9E-17 130.9 -3.2 149 344-501 92-244 (722)
22 PRK15387 E3 ubiquitin-protein 99.1 2E-10 4.4E-15 125.3 11.4 171 299-500 221-391 (788)
23 KOG0532 Leucine-rich repeat (L 99.1 3.8E-12 8.2E-17 128.6 -2.8 177 348-536 73-254 (722)
24 cd00116 LRR_RI Leucine-rich re 99.0 2E-10 4.3E-15 115.5 3.5 227 302-535 25-297 (319)
25 COG4886 Leucine-rich repeat (L 99.0 5.3E-10 1.1E-14 116.0 5.4 178 345-533 111-294 (394)
26 KOG4658 Apoptotic ATPase [Sign 98.9 7.4E-10 1.6E-14 123.4 6.2 196 323-533 524-734 (889)
27 KOG4237 Extracellular matrix p 98.9 1.9E-10 4.1E-15 111.7 -0.4 221 298-531 65-361 (498)
28 cd00116 LRR_RI Leucine-rich re 98.9 6E-10 1.3E-14 112.0 2.7 222 301-528 52-319 (319)
29 PF14580 LRR_9: Leucine-rich r 98.9 2.8E-09 6E-14 95.8 5.2 85 346-432 15-101 (175)
30 PRK00411 cdc6 cell division co 98.8 4.2E-08 9.1E-13 101.8 12.8 143 49-197 31-187 (394)
31 PF14580 LRR_9: Leucine-rich r 98.8 5.9E-09 1.3E-13 93.7 5.2 124 323-453 20-150 (175)
32 COG4886 Leucine-rich repeat (L 98.7 1E-08 2.3E-13 106.3 5.8 165 323-500 117-286 (394)
33 TIGR02928 orc1/cdc6 family rep 98.7 9E-08 2E-12 98.2 10.9 115 49-165 16-140 (365)
34 PF13401 AAA_22: AAA domain; P 98.7 8.2E-08 1.8E-12 82.9 8.2 113 71-192 4-125 (131)
35 cd00009 AAA The AAA+ (ATPases 98.6 2.8E-07 6.1E-12 80.8 11.3 123 51-194 1-131 (151)
36 PF05729 NACHT: NACHT domain 98.6 7.8E-08 1.7E-12 86.6 7.4 114 72-195 1-132 (166)
37 PF13191 AAA_16: AAA ATPase do 98.6 5.7E-08 1.2E-12 89.3 6.2 50 49-100 1-51 (185)
38 KOG1259 Nischarin, modulator o 98.6 1.8E-08 4E-13 94.8 1.1 125 396-530 284-413 (490)
39 cd01128 rho_factor Transcripti 98.5 1.2E-07 2.5E-12 90.8 5.6 94 71-165 16-114 (249)
40 KOG1259 Nischarin, modulator o 98.5 3.1E-08 6.8E-13 93.2 0.4 125 347-476 281-410 (490)
41 PF01637 Arch_ATPase: Archaeal 98.4 4.6E-07 1E-11 86.4 7.8 60 50-113 1-60 (234)
42 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.6E-12 69.2 3.5 56 351-406 2-59 (61)
43 PF13173 AAA_14: AAA domain 98.4 3.5E-07 7.6E-12 78.7 6.1 102 71-197 2-103 (128)
44 TIGR03015 pepcterm_ATPase puta 98.4 6.6E-06 1.4E-10 80.6 15.0 97 71-175 43-145 (269)
45 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.4E-12 68.2 3.6 58 373-430 1-60 (61)
46 PRK09376 rho transcription ter 98.4 3.4E-07 7.3E-12 91.4 4.8 89 72-165 170-267 (416)
47 PLN03150 hypothetical protein; 98.3 1.5E-06 3.3E-11 95.0 9.6 78 352-429 420-500 (623)
48 PTZ00202 tuzin; Provisional 98.3 8.2E-06 1.8E-10 82.1 13.8 100 49-162 263-369 (550)
49 PLN03150 hypothetical protein; 98.3 8.2E-07 1.8E-11 97.0 7.2 102 324-429 420-525 (623)
50 PTZ00112 origin recognition co 98.2 8.7E-06 1.9E-10 88.2 11.9 114 49-165 756-880 (1164)
51 PRK04841 transcriptional regul 98.2 1.1E-05 2.3E-10 93.2 12.9 134 49-193 15-162 (903)
52 TIGR00767 rho transcription te 98.2 3.7E-06 8.1E-11 84.5 7.5 91 72-165 169-266 (415)
53 KOG3207 Beta-tubulin folding c 98.1 3.6E-07 7.8E-12 90.5 -0.6 170 299-476 120-312 (505)
54 KOG3207 Beta-tubulin folding c 98.1 5.5E-07 1.2E-11 89.2 0.7 203 317-531 118-341 (505)
55 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 57.2 3.8 39 374-412 2-40 (44)
56 PRK12402 replication factor C 98.1 1.2E-05 2.6E-10 81.5 9.7 43 49-93 16-58 (337)
57 KOG2543 Origin recognition com 98.1 1.4E-05 3.1E-10 78.3 9.1 112 49-165 7-126 (438)
58 PRK06893 DNA replication initi 98.1 8.1E-06 1.8E-10 77.7 7.3 37 71-109 39-75 (229)
59 KOG0531 Protein phosphatase 1, 98.1 4.6E-07 9.9E-12 94.5 -1.8 164 323-500 96-264 (414)
60 COG1474 CDC6 Cdc6-related prot 98.1 2.2E-05 4.7E-10 79.6 10.1 111 49-165 18-134 (366)
61 PF12799 LRR_4: Leucine Rich r 98.0 3.8E-06 8.1E-11 57.0 3.1 41 350-390 1-41 (44)
62 PRK05564 DNA polymerase III su 98.0 6.1E-05 1.3E-09 75.5 12.8 124 49-194 5-134 (313)
63 PRK13342 recombination factor 98.0 1.5E-05 3.3E-10 82.9 8.6 107 49-188 13-124 (413)
64 KOG1909 Ran GTPase-activating 98.0 2.1E-06 4.5E-11 83.0 1.7 212 317-533 27-287 (382)
65 KOG2120 SCF ubiquitin ligase, 98.0 6.7E-07 1.4E-11 84.4 -2.5 160 344-529 204-376 (419)
66 PRK04195 replication factor C 98.0 3.5E-05 7.6E-10 81.8 9.9 117 49-192 15-139 (482)
67 TIGR00635 ruvB Holliday juncti 97.9 1.7E-05 3.7E-10 79.2 6.8 132 49-194 5-141 (305)
68 PRK07003 DNA polymerase III su 97.9 6.9E-05 1.5E-09 80.9 11.3 138 49-194 17-160 (830)
69 PLN03025 replication factor C 97.9 6.6E-05 1.4E-09 75.4 10.3 122 49-192 14-138 (319)
70 PRK15386 type III secretion pr 97.9 4E-05 8.7E-10 77.5 8.4 134 346-500 48-186 (426)
71 PHA02544 44 clamp loader, smal 97.9 6.2E-05 1.3E-09 75.6 9.9 119 49-194 22-142 (316)
72 PRK14961 DNA polymerase III su 97.9 0.00013 2.9E-09 74.5 12.4 44 49-93 17-60 (363)
73 smart00382 AAA ATPases associa 97.8 8.6E-05 1.9E-09 64.2 9.0 86 72-165 3-89 (148)
74 TIGR03420 DnaA_homol_Hda DnaA 97.8 2.8E-05 6.1E-10 74.0 6.2 57 49-109 16-74 (226)
75 PRK00440 rfc replication facto 97.8 0.00014 3.1E-09 73.0 11.7 120 49-192 18-141 (319)
76 PRK11331 5-methylcytosine-spec 97.8 4.3E-05 9.2E-10 78.2 7.7 106 49-165 176-283 (459)
77 PRK08116 hypothetical protein; 97.8 0.00011 2.4E-09 71.6 10.2 103 72-193 115-221 (268)
78 TIGR02903 spore_lon_C ATP-depe 97.8 8.7E-05 1.9E-09 80.7 10.4 143 49-194 155-335 (615)
79 PRK14960 DNA polymerase III su 97.8 0.00013 2.9E-09 77.9 11.4 137 49-193 16-158 (702)
80 TIGR01242 26Sp45 26S proteasom 97.8 5.6E-05 1.2E-09 77.4 8.4 51 49-101 123-184 (364)
81 PRK00080 ruvB Holliday junctio 97.8 6.5E-05 1.4E-09 75.8 8.7 45 49-93 26-73 (328)
82 KOG0531 Protein phosphatase 1, 97.8 4.8E-06 1.1E-10 86.8 0.3 101 301-410 96-200 (414)
83 COG2909 MalT ATP-dependent tra 97.8 0.00026 5.7E-09 76.4 12.7 140 49-196 20-173 (894)
84 PRK13341 recombination factor 97.8 7.8E-05 1.7E-09 82.0 8.9 49 49-101 29-80 (725)
85 PRK12323 DNA polymerase III su 97.8 0.00022 4.7E-09 76.1 11.8 44 49-93 17-60 (700)
86 PRK14957 DNA polymerase III su 97.7 0.00023 4.9E-09 75.7 11.6 44 49-93 17-60 (546)
87 PRK08727 hypothetical protein; 97.7 7.7E-05 1.7E-09 71.2 7.4 57 49-109 20-77 (233)
88 KOG1909 Ran GTPase-activating 97.7 4E-06 8.6E-11 81.1 -1.5 224 299-529 29-311 (382)
89 PRK14949 DNA polymerase III su 97.7 0.00019 4.1E-09 79.1 11.0 44 49-93 17-60 (944)
90 PRK14963 DNA polymerase III su 97.7 0.00026 5.5E-09 75.0 11.8 135 49-192 15-155 (504)
91 PRK08691 DNA polymerase III su 97.7 0.00024 5.2E-09 76.6 11.4 44 49-93 17-60 (709)
92 KOG3665 ZYG-1-like serine/thre 97.7 2E-05 4.3E-10 86.2 3.3 57 416-476 170-231 (699)
93 PF00004 AAA: ATPase family as 97.7 9.9E-05 2.2E-09 63.4 7.0 20 74-93 1-20 (132)
94 PRK14958 DNA polymerase III su 97.7 0.00034 7.3E-09 74.3 11.7 44 49-93 17-60 (509)
95 PRK06645 DNA polymerase III su 97.7 0.00041 8.8E-09 73.3 11.9 143 49-197 22-173 (507)
96 KOG3665 ZYG-1-like serine/thre 97.7 4.5E-05 9.7E-10 83.5 4.9 127 300-432 122-263 (699)
97 PRK14969 DNA polymerase III su 97.7 0.00052 1.1E-08 73.3 12.9 44 49-93 17-60 (527)
98 PRK14962 DNA polymerase III su 97.6 0.00042 9.2E-09 72.8 11.5 44 49-93 15-58 (472)
99 PRK08118 topology modulation p 97.6 3.3E-05 7.2E-10 69.6 2.2 35 72-106 2-37 (167)
100 TIGR00678 holB DNA polymerase 97.6 0.0011 2.4E-08 61.1 12.4 41 153-193 95-136 (188)
101 PRK14956 DNA polymerase III su 97.6 0.00021 4.6E-09 74.1 8.3 44 49-93 19-62 (484)
102 KOG4579 Leucine-rich repeat (L 97.6 1.5E-05 3.2E-10 67.0 -0.2 87 323-413 54-140 (177)
103 KOG2028 ATPase related to the 97.6 0.00022 4.8E-09 69.5 7.7 113 49-189 139-255 (554)
104 TIGR02397 dnaX_nterm DNA polym 97.6 0.00079 1.7E-08 68.8 12.5 44 49-93 15-58 (355)
105 PRK07940 DNA polymerase III su 97.6 0.00058 1.3E-08 70.0 11.2 45 49-93 6-58 (394)
106 PRK14964 DNA polymerase III su 97.6 0.00065 1.4E-08 71.2 11.8 44 49-93 14-57 (491)
107 PRK03992 proteasome-activating 97.6 0.00033 7.1E-09 72.2 9.4 45 49-93 132-187 (389)
108 COG2256 MGS1 ATPase related to 97.5 0.0003 6.6E-09 69.8 8.4 112 49-193 25-141 (436)
109 PRK10536 hypothetical protein; 97.5 0.00081 1.8E-08 63.9 10.9 54 49-106 56-109 (262)
110 PRK14951 DNA polymerase III su 97.5 0.00075 1.6E-08 72.8 11.7 44 49-93 17-60 (618)
111 PRK08181 transposase; Validate 97.5 0.00025 5.5E-09 68.7 6.8 100 72-193 107-209 (269)
112 KOG4579 Leucine-rich repeat (L 97.5 3.4E-05 7.4E-10 64.9 0.6 83 347-429 50-133 (177)
113 PRK12377 putative replication 97.5 0.00047 1E-08 66.0 8.3 101 71-192 101-205 (248)
114 TIGR02639 ClpA ATP-dependent C 97.4 0.00045 9.8E-09 77.2 9.5 116 49-179 455-579 (731)
115 PRK05896 DNA polymerase III su 97.4 0.00088 1.9E-08 71.5 10.9 44 49-93 17-60 (605)
116 PRK14955 DNA polymerase III su 97.4 0.0012 2.6E-08 68.4 11.8 44 49-93 17-60 (397)
117 PRK14970 DNA polymerase III su 97.4 0.0012 2.6E-08 67.8 11.7 44 49-93 18-61 (367)
118 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00051 1.1E-08 77.5 9.6 133 49-192 567-718 (852)
119 KOG1859 Leucine-rich repeat pr 97.4 1.3E-05 2.7E-10 84.4 -3.0 101 323-430 188-290 (1096)
120 PF04665 Pox_A32: Poxvirus A32 97.4 0.00024 5.2E-09 67.1 5.7 35 73-109 15-49 (241)
121 PRK05642 DNA replication initi 97.4 0.00033 7.1E-09 66.9 6.7 37 71-109 45-81 (234)
122 PF05621 TniB: Bacterial TniB 97.4 0.0011 2.4E-08 64.3 10.1 113 49-165 35-156 (302)
123 PF05496 RuvB_N: Holliday junc 97.4 0.0002 4.3E-09 66.3 4.8 51 49-101 25-78 (233)
124 CHL00181 cbbX CbbX; Provisiona 97.4 0.0016 3.6E-08 64.0 11.6 127 49-195 24-173 (287)
125 PRK08903 DnaA regulatory inact 97.4 0.00039 8.5E-09 66.2 7.0 45 49-94 19-65 (227)
126 KOG1859 Leucine-rich repeat pr 97.4 3.2E-06 7E-11 88.7 -8.0 83 344-429 181-264 (1096)
127 PRK15386 type III secretion pr 97.4 0.0007 1.5E-08 68.7 8.7 81 301-395 53-137 (426)
128 TIGR02880 cbbX_cfxQ probable R 97.4 0.0013 2.7E-08 64.8 10.4 125 49-193 23-170 (284)
129 PRK07952 DNA replication prote 97.4 0.00078 1.7E-08 64.3 8.6 116 57-192 85-204 (244)
130 PRK08084 DNA replication initi 97.4 0.00049 1.1E-08 65.8 7.2 57 49-109 23-81 (235)
131 PRK10865 protein disaggregatio 97.3 0.00086 1.9E-08 75.9 10.1 132 49-192 569-720 (857)
132 PRK07994 DNA polymerase III su 97.3 0.0011 2.4E-08 71.7 10.5 44 49-93 17-60 (647)
133 PF02562 PhoH: PhoH-like prote 97.3 0.00042 9.2E-09 63.9 6.2 134 51-196 3-159 (205)
134 COG0542 clpA ATP-binding subun 97.3 0.0005 1.1E-08 74.9 7.6 130 49-192 492-643 (786)
135 PRK14952 DNA polymerase III su 97.3 0.0023 5E-08 68.8 12.5 44 49-93 14-57 (584)
136 PRK07471 DNA polymerase III su 97.3 0.0022 4.8E-08 65.2 11.7 44 49-93 20-63 (365)
137 cd01120 RecA-like_NTPases RecA 97.3 0.0015 3.2E-08 58.2 9.5 40 73-114 1-40 (165)
138 PRK06526 transposase; Provisio 97.3 0.00041 8.8E-09 66.9 6.0 23 71-93 98-120 (254)
139 PF00308 Bac_DnaA: Bacterial d 97.3 0.00048 1E-08 65.0 6.3 114 58-193 20-140 (219)
140 TIGR02881 spore_V_K stage V sp 97.3 0.00085 1.9E-08 65.3 8.3 45 49-93 7-64 (261)
141 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4.2E-08 73.3 12.2 133 49-192 566-717 (852)
142 PRK09087 hypothetical protein; 97.3 0.001 2.2E-08 63.0 8.5 25 70-94 43-67 (226)
143 PRK12608 transcription termina 97.3 0.00069 1.5E-08 68.0 7.3 107 56-165 119-231 (380)
144 PRK09183 transposase/IS protei 97.3 0.00067 1.5E-08 65.7 7.1 22 72-93 103-124 (259)
145 KOG2120 SCF ubiquitin ligase, 97.2 9.1E-06 2E-10 76.9 -5.9 77 302-384 187-271 (419)
146 KOG2227 Pre-initiation complex 97.2 0.0014 3.1E-08 66.3 8.9 135 49-189 151-293 (529)
147 PTZ00454 26S protease regulato 97.2 0.0019 4.1E-08 66.5 10.2 45 49-93 146-201 (398)
148 PRK07261 topology modulation p 97.2 0.00073 1.6E-08 61.2 6.4 22 73-94 2-23 (171)
149 PRK09361 radB DNA repair and r 97.2 0.00099 2.2E-08 63.3 7.7 99 60-164 12-117 (225)
150 CHL00095 clpC Clp protease ATP 97.2 0.00065 1.4E-08 76.8 7.3 43 49-93 180-222 (821)
151 cd01133 F1-ATPase_beta F1 ATP 97.2 0.00094 2E-08 64.4 7.1 93 71-165 69-174 (274)
152 PRK07764 DNA polymerase III su 97.2 0.0027 5.9E-08 71.0 11.7 44 49-93 16-59 (824)
153 CHL00095 clpC Clp protease ATP 97.2 0.0027 5.7E-08 72.0 11.8 133 49-193 510-662 (821)
154 PRK14950 DNA polymerase III su 97.2 0.0035 7.7E-08 68.1 12.3 136 49-192 17-159 (585)
155 PRK14953 DNA polymerase III su 97.2 0.0045 9.8E-08 65.4 12.6 44 49-93 17-60 (486)
156 PRK09111 DNA polymerase III su 97.2 0.0032 6.9E-08 68.1 11.6 44 49-93 25-68 (598)
157 PRK09112 DNA polymerase III su 97.2 0.004 8.6E-08 63.0 11.6 44 49-93 24-67 (351)
158 PRK14954 DNA polymerase III su 97.2 0.004 8.6E-08 67.5 12.2 44 49-93 17-60 (620)
159 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00032 7E-09 70.0 3.6 46 49-94 52-101 (361)
160 cd01131 PilT Pilus retraction 97.1 0.00096 2.1E-08 62.0 6.5 112 72-197 2-113 (198)
161 PRK06921 hypothetical protein; 97.1 0.0016 3.5E-08 63.3 8.3 37 71-109 117-154 (266)
162 COG3903 Predicted ATPase [Gene 97.1 0.00015 3.2E-09 72.4 1.1 118 70-198 13-132 (414)
163 COG0470 HolB ATPase involved i 97.1 0.0039 8.5E-08 62.7 11.5 122 49-192 2-148 (325)
164 TIGR00362 DnaA chromosomal rep 97.1 0.0018 4E-08 67.3 9.2 100 71-192 136-241 (405)
165 PF13177 DNA_pol3_delta2: DNA 97.1 0.0045 9.8E-08 55.4 10.5 121 52-194 1-143 (162)
166 cd01393 recA_like RecA is a b 97.1 0.004 8.6E-08 59.1 10.8 93 70-165 18-125 (226)
167 PRK06835 DNA replication prote 97.1 0.0016 3.5E-08 65.1 8.0 35 72-108 184-218 (329)
168 PHA00729 NTP-binding motif con 97.1 0.0012 2.7E-08 61.6 6.7 33 59-93 7-39 (226)
169 PRK08451 DNA polymerase III su 97.1 0.0057 1.2E-07 64.9 12.5 44 49-93 15-58 (535)
170 PRK14959 DNA polymerase III su 97.1 0.0037 8E-08 67.2 11.2 45 49-94 17-61 (624)
171 cd03247 ABCC_cytochrome_bd The 97.1 0.0042 9.2E-08 56.6 10.1 121 71-197 28-161 (178)
172 cd03214 ABC_Iron-Siderophores_ 97.1 0.003 6.6E-08 57.7 9.2 123 71-197 25-162 (180)
173 PRK06305 DNA polymerase III su 97.1 0.0036 7.7E-08 65.7 10.6 44 49-93 18-61 (451)
174 PRK10865 protein disaggregatio 97.1 0.0016 3.5E-08 73.7 8.6 43 49-93 179-221 (857)
175 TIGR02639 ClpA ATP-dependent C 97.1 0.0012 2.5E-08 73.9 7.4 43 49-93 183-225 (731)
176 PF01695 IstB_IS21: IstB-like 97.1 0.00037 8.1E-09 63.4 2.8 36 71-108 47-82 (178)
177 PF13207 AAA_17: AAA domain; P 97.1 0.00041 9E-09 58.7 2.9 21 73-93 1-21 (121)
178 COG1484 DnaC DNA replication p 97.0 0.0015 3.3E-08 62.9 7.1 74 71-165 105-178 (254)
179 PRK14088 dnaA chromosomal repl 97.0 0.0019 4.2E-08 67.5 8.3 100 71-191 130-235 (440)
180 TIGR02237 recomb_radB DNA repa 97.0 0.0015 3.4E-08 61.2 7.0 92 70-165 11-108 (209)
181 KOG2982 Uncharacterized conser 97.0 0.00026 5.7E-09 67.3 1.6 83 347-429 68-156 (418)
182 PRK14965 DNA polymerase III su 97.0 0.0053 1.2E-07 66.5 11.9 44 49-93 17-60 (576)
183 COG4608 AppF ABC-type oligopep 97.0 0.0032 6.9E-08 59.9 8.8 125 71-198 39-175 (268)
184 PRK06696 uridine kinase; Valid 97.0 0.0013 2.8E-08 62.4 6.3 42 52-93 2-44 (223)
185 PRK08939 primosomal protein Dn 97.0 0.0021 4.7E-08 63.7 8.0 118 53-192 136-260 (306)
186 COG1373 Predicted ATPase (AAA+ 97.0 0.003 6.5E-08 65.2 9.3 97 73-197 39-135 (398)
187 TIGR00602 rad24 checkpoint pro 97.0 0.0016 3.5E-08 70.4 7.5 45 49-93 85-132 (637)
188 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0052 1.1E-07 53.9 9.5 104 71-197 26-131 (144)
189 PRK11034 clpA ATP-dependent Cl 97.0 0.002 4.3E-08 71.5 8.3 115 49-178 459-582 (758)
190 TIGR03689 pup_AAA proteasome A 97.0 0.0012 2.7E-08 69.4 6.4 45 49-93 183-238 (512)
191 PF07728 AAA_5: AAA domain (dy 97.0 0.00099 2.1E-08 58.0 4.6 42 74-120 2-43 (139)
192 PRK05541 adenylylsulfate kinas 97.0 0.0022 4.8E-08 58.3 7.1 37 70-108 6-42 (176)
193 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.004 8.6E-08 59.5 9.0 95 70-165 18-126 (235)
194 CHL00176 ftsH cell division pr 96.9 0.0032 7E-08 68.6 9.1 93 49-165 184-286 (638)
195 PRK04296 thymidine kinase; Pro 96.9 0.0019 4.2E-08 59.5 6.4 114 72-194 3-117 (190)
196 cd03238 ABC_UvrA The excision 96.9 0.0057 1.2E-07 55.5 9.3 117 71-197 21-153 (176)
197 PRK14971 DNA polymerase III su 96.9 0.0084 1.8E-07 65.2 12.3 44 49-93 18-61 (614)
198 PRK00149 dnaA chromosomal repl 96.9 0.0023 4.9E-08 67.5 7.7 101 70-192 147-253 (450)
199 PRK07133 DNA polymerase III su 96.9 0.008 1.7E-07 65.7 11.9 44 49-93 19-62 (725)
200 KOG1644 U2-associated snRNP A' 96.9 0.0011 2.4E-08 59.8 4.4 83 345-427 59-148 (233)
201 PRK14948 DNA polymerase III su 96.9 0.0087 1.9E-07 65.2 12.2 45 49-94 17-61 (620)
202 PRK14087 dnaA chromosomal repl 96.9 0.0031 6.7E-08 66.1 8.6 102 71-192 141-248 (450)
203 PRK05563 DNA polymerase III su 96.9 0.012 2.7E-07 63.4 13.3 44 49-93 17-60 (559)
204 PRK07667 uridine kinase; Provi 96.9 0.0018 3.9E-08 59.9 6.0 37 57-93 3-39 (193)
205 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0023 4.9E-08 66.8 6.9 93 49-165 191-293 (802)
206 PRK06620 hypothetical protein; 96.9 0.0017 3.7E-08 61.0 5.7 23 72-94 45-67 (214)
207 PRK06647 DNA polymerase III su 96.9 0.011 2.4E-07 63.6 12.6 44 49-93 17-60 (563)
208 TIGR02640 gas_vesic_GvpN gas v 96.9 0.0058 1.3E-07 59.4 9.5 53 57-118 11-63 (262)
209 TIGR03345 VI_ClpV1 type VI sec 96.9 0.002 4.4E-08 72.8 7.1 43 49-93 188-230 (852)
210 PRK12422 chromosomal replicati 96.8 0.0024 5.2E-08 66.8 6.7 99 71-192 141-244 (445)
211 PF14532 Sigma54_activ_2: Sigm 96.8 0.0013 2.8E-08 57.2 4.0 44 51-94 1-44 (138)
212 TIGR02858 spore_III_AA stage I 96.8 0.018 4E-07 55.9 12.3 130 56-197 97-233 (270)
213 cd01394 radB RadB. The archaea 96.8 0.0052 1.1E-07 58.0 8.0 104 58-165 6-114 (218)
214 cd03228 ABCC_MRP_Like The MRP 96.7 0.0055 1.2E-07 55.4 7.8 119 71-197 28-159 (171)
215 PF00448 SRP54: SRP54-type pro 96.7 0.003 6.5E-08 58.4 6.1 57 71-129 1-58 (196)
216 PRK09270 nucleoside triphospha 96.7 0.0074 1.6E-07 57.5 9.0 25 69-93 31-55 (229)
217 cd03223 ABCD_peroxisomal_ALDP 96.7 0.013 2.8E-07 52.7 10.0 114 71-196 27-151 (166)
218 KOG2982 Uncharacterized conser 96.7 0.00049 1.1E-08 65.5 0.8 203 317-524 68-287 (418)
219 PF05673 DUF815: Protein of un 96.7 0.014 3.1E-07 54.9 10.4 120 49-197 28-155 (249)
220 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0033 7.1E-08 71.5 7.2 43 49-93 174-216 (852)
221 COG1875 NYN ribonuclease and A 96.7 0.0039 8.5E-08 61.3 6.6 135 51-196 227-391 (436)
222 cd03246 ABCC_Protease_Secretio 96.7 0.0064 1.4E-07 55.1 7.8 121 71-197 28-160 (173)
223 cd03216 ABC_Carb_Monos_I This 96.7 0.0062 1.3E-07 54.6 7.6 116 71-197 26-146 (163)
224 PF13671 AAA_33: AAA domain; P 96.7 0.003 6.5E-08 55.1 5.5 21 73-93 1-21 (143)
225 PF00485 PRK: Phosphoribulokin 96.7 0.0089 1.9E-07 55.3 8.9 82 73-157 1-86 (194)
226 PF08423 Rad51: Rad51; InterP 96.7 0.0032 6.8E-08 60.9 5.9 94 71-165 38-144 (256)
227 TIGR00064 ftsY signal recognit 96.7 0.0098 2.1E-07 58.0 9.4 93 69-165 70-165 (272)
228 KOG1644 U2-associated snRNP A' 96.7 0.0023 4.9E-08 57.8 4.4 104 349-453 41-150 (233)
229 PRK08233 hypothetical protein; 96.6 0.0065 1.4E-07 55.4 7.6 23 71-93 3-25 (182)
230 TIGR01241 FtsH_fam ATP-depende 96.6 0.012 2.5E-07 63.0 10.5 45 49-93 56-110 (495)
231 COG0572 Udk Uridine kinase [Nu 96.6 0.0035 7.5E-08 58.0 5.4 29 70-100 7-35 (218)
232 COG2884 FtsE Predicted ATPase 96.6 0.014 3E-07 52.4 9.0 125 71-198 28-202 (223)
233 PRK15455 PrkA family serine pr 96.6 0.0018 4E-08 68.1 4.0 45 49-93 77-125 (644)
234 PTZ00361 26 proteosome regulat 96.6 0.0023 5E-08 66.4 4.7 51 49-101 184-245 (438)
235 cd03115 SRP The signal recogni 96.6 0.013 2.8E-07 53.0 9.2 21 73-93 2-22 (173)
236 cd03222 ABC_RNaseL_inhibitor T 96.6 0.013 2.9E-07 53.1 9.0 102 71-197 25-136 (177)
237 PRK11034 clpA ATP-dependent Cl 96.6 0.0042 9E-08 69.0 6.8 43 49-93 187-229 (758)
238 PRK14086 dnaA chromosomal repl 96.6 0.0078 1.7E-07 64.5 8.5 100 71-192 314-419 (617)
239 COG0466 Lon ATP-dependent Lon 96.6 0.0035 7.6E-08 66.8 5.8 101 49-165 324-428 (782)
240 TIGR02238 recomb_DMC1 meiotic 96.6 0.009 2E-07 59.4 8.4 107 58-165 83-202 (313)
241 COG2255 RuvB Holliday junction 96.5 0.0019 4.2E-08 61.3 3.4 50 49-100 27-79 (332)
242 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0052 1.1E-07 55.7 6.1 120 71-197 26-159 (173)
243 PRK11889 flhF flagellar biosyn 96.5 0.031 6.8E-07 56.6 11.9 24 70-93 240-263 (436)
244 cd03229 ABC_Class3 This class 96.5 0.0068 1.5E-07 55.2 6.9 121 71-197 26-165 (178)
245 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.6E-08 62.0 1.8 81 346-426 61-150 (260)
246 TIGR03499 FlhF flagellar biosy 96.5 0.0099 2.1E-07 58.4 8.3 86 70-163 193-281 (282)
247 COG1618 Predicted nucleotide k 96.5 0.0022 4.8E-08 55.7 3.2 32 72-105 6-38 (179)
248 KOG1514 Origin recognition com 96.5 0.023 4.9E-07 60.6 11.1 134 49-190 397-546 (767)
249 TIGR02012 tigrfam_recA protein 96.5 0.0068 1.5E-07 60.1 6.9 89 70-165 54-144 (321)
250 PRK07399 DNA polymerase III su 96.5 0.017 3.7E-07 57.6 9.7 44 49-93 5-48 (314)
251 TIGR02239 recomb_RAD51 DNA rep 96.5 0.013 2.9E-07 58.4 8.9 110 55-165 80-202 (316)
252 PLN03187 meiotic recombination 96.4 0.01 2.2E-07 59.6 8.0 95 70-165 125-232 (344)
253 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.022 4.8E-07 54.1 9.8 124 72-197 31-203 (254)
254 PRK14974 cell division protein 96.4 0.022 4.9E-07 57.0 10.3 91 70-165 139-233 (336)
255 cd02025 PanK Pantothenate kina 96.4 0.011 2.4E-07 55.8 7.7 21 73-93 1-21 (220)
256 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.021 4.6E-07 52.1 9.4 21 73-93 1-21 (183)
257 PRK00771 signal recognition pa 96.4 0.036 7.8E-07 57.6 12.0 92 70-165 94-186 (437)
258 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.01 2.2E-07 52.8 7.1 114 72-197 26-144 (157)
259 PF13604 AAA_30: AAA domain; P 96.4 0.015 3.2E-07 53.9 8.4 105 72-195 19-133 (196)
260 cd00983 recA RecA is a bacter 96.4 0.0076 1.7E-07 59.8 6.7 89 70-165 54-144 (325)
261 KOG2739 Leucine-rich acidic nu 96.4 0.0025 5.3E-08 59.9 3.0 109 344-453 37-153 (260)
262 PRK10867 signal recognition pa 96.4 0.018 3.9E-07 59.7 9.7 24 70-93 99-122 (433)
263 COG1126 GlnQ ABC-type polar am 96.4 0.045 9.7E-07 50.3 10.9 124 71-197 28-200 (240)
264 cd03235 ABC_Metallic_Cations A 96.4 0.024 5.3E-07 53.2 9.9 24 71-94 25-48 (213)
265 PRK04040 adenylate kinase; Pro 96.4 0.0077 1.7E-07 55.3 6.3 23 71-93 2-24 (188)
266 KOG2123 Uncharacterized conser 96.4 0.00029 6.3E-09 66.4 -3.2 96 323-425 20-123 (388)
267 PLN00020 ribulose bisphosphate 96.4 0.013 2.7E-07 58.6 7.9 31 69-101 146-176 (413)
268 KOG0991 Replication factor C, 96.4 0.0079 1.7E-07 55.5 6.0 43 49-93 28-70 (333)
269 PRK08058 DNA polymerase III su 96.3 0.031 6.8E-07 56.3 11.0 132 49-194 6-151 (329)
270 PTZ00301 uridine kinase; Provi 96.3 0.004 8.7E-08 58.1 4.2 23 71-93 3-25 (210)
271 KOG2004 Mitochondrial ATP-depe 96.3 0.0049 1.1E-07 65.5 5.2 101 49-165 412-516 (906)
272 KOG0989 Replication factor C, 96.3 0.011 2.4E-07 56.8 7.2 128 49-193 37-169 (346)
273 COG1124 DppF ABC-type dipeptid 96.3 0.033 7.1E-07 52.1 10.0 126 71-198 33-207 (252)
274 COG1222 RPT1 ATP-dependent 26S 96.3 0.014 3E-07 57.5 7.8 124 49-197 152-304 (406)
275 COG0468 RecA RecA/RadA recombi 96.3 0.015 3.2E-07 56.4 8.2 94 69-165 58-152 (279)
276 TIGR00763 lon ATP-dependent pr 96.3 0.012 2.7E-07 66.2 8.8 51 49-101 321-375 (775)
277 PRK14722 flhF flagellar biosyn 96.3 0.03 6.4E-07 56.8 10.5 87 71-165 137-226 (374)
278 PRK05703 flhF flagellar biosyn 96.3 0.055 1.2E-06 56.3 12.7 38 71-110 221-260 (424)
279 TIGR01243 CDC48 AAA family ATP 96.3 0.0096 2.1E-07 66.8 7.6 45 49-93 179-234 (733)
280 cd03269 ABC_putative_ATPase Th 96.3 0.039 8.5E-07 51.6 10.6 53 145-197 137-192 (210)
281 cd03215 ABC_Carb_Monos_II This 96.3 0.018 3.8E-07 52.7 8.0 122 71-197 26-168 (182)
282 PRK04301 radA DNA repair and r 96.2 0.026 5.7E-07 56.5 9.8 107 58-165 89-209 (317)
283 PRK09354 recA recombinase A; P 96.2 0.011 2.4E-07 59.2 7.0 100 59-165 47-149 (349)
284 PRK05707 DNA polymerase III su 96.2 0.054 1.2E-06 54.4 11.8 41 154-194 106-147 (328)
285 PRK06002 fliI flagellum-specif 96.2 0.021 4.5E-07 59.1 8.9 92 71-165 165-265 (450)
286 PRK11608 pspF phage shock prot 96.2 0.012 2.6E-07 59.2 7.1 45 49-93 7-51 (326)
287 PRK12723 flagellar biosynthesi 96.2 0.067 1.4E-06 54.7 12.5 89 70-165 173-265 (388)
288 cd03225 ABC_cobalt_CbiO_domain 96.2 0.04 8.6E-07 51.6 10.3 57 141-197 139-198 (211)
289 cd03244 ABCC_MRP_domain2 Domai 96.2 0.026 5.7E-07 53.3 9.0 24 71-94 30-53 (221)
290 PRK10247 putative ABC transpor 96.2 0.036 7.7E-07 52.6 9.9 57 141-197 142-202 (225)
291 PRK15429 formate hydrogenlyase 96.2 0.017 3.7E-07 64.3 8.9 46 49-94 377-422 (686)
292 PF13238 AAA_18: AAA domain; P 96.2 0.0035 7.5E-08 53.4 2.7 20 74-93 1-20 (129)
293 PRK13543 cytochrome c biogenes 96.2 0.053 1.1E-06 51.0 10.9 127 71-197 37-201 (214)
294 TIGR01817 nifA Nif-specific re 96.1 0.036 7.7E-07 59.9 10.9 46 49-94 197-242 (534)
295 PRK05480 uridine/cytidine kina 96.1 0.0044 9.5E-08 58.1 3.4 24 70-93 5-28 (209)
296 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.067 1.5E-06 49.9 11.4 57 141-197 130-188 (207)
297 PLN03186 DNA repair protein RA 96.1 0.033 7.2E-07 56.0 9.8 109 56-165 108-229 (342)
298 TIGR00235 udk uridine kinase. 96.1 0.0048 1E-07 57.7 3.6 24 70-93 5-28 (207)
299 TIGR02236 recomb_radA DNA repa 96.1 0.021 4.6E-07 57.0 8.4 68 59-127 83-154 (310)
300 PRK06547 hypothetical protein; 96.1 0.0078 1.7E-07 54.4 4.8 26 69-94 13-38 (172)
301 cd03237 ABC_RNaseL_inhibitor_d 96.1 0.038 8.2E-07 53.2 9.8 127 71-197 25-180 (246)
302 PRK13695 putative NTPase; Prov 96.1 0.0069 1.5E-07 54.9 4.5 22 73-94 2-23 (174)
303 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.017 3.6E-07 51.2 6.6 120 72-194 3-139 (159)
304 cd01135 V_A-ATPase_B V/A-type 96.1 0.017 3.6E-07 55.8 7.1 95 71-165 69-177 (276)
305 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.051 1.1E-06 51.9 10.6 54 144-197 140-197 (236)
306 PRK08972 fliI flagellum-specif 96.1 0.013 2.8E-07 60.3 6.6 91 71-165 162-263 (444)
307 COG0593 DnaA ATPase involved i 96.1 0.021 4.6E-07 58.2 8.1 102 70-192 112-217 (408)
308 KOG0744 AAA+-type ATPase [Post 96.1 0.015 3.3E-07 56.3 6.6 81 71-165 177-261 (423)
309 TIGR02974 phageshock_pspF psp 96.0 0.033 7.2E-07 56.0 9.4 45 50-94 1-45 (329)
310 TIGR01243 CDC48 AAA family ATP 96.0 0.033 7.1E-07 62.6 10.3 45 49-93 454-509 (733)
311 PRK08149 ATP synthase SpaL; Va 96.0 0.023 5E-07 58.6 8.2 91 71-165 151-252 (428)
312 TIGR03608 L_ocin_972_ABC putat 96.0 0.053 1.1E-06 50.6 10.2 56 141-196 139-197 (206)
313 cd03263 ABC_subfamily_A The AB 96.0 0.055 1.2E-06 51.1 10.4 54 144-197 141-196 (220)
314 cd03226 ABC_cobalt_CbiO_domain 96.0 0.075 1.6E-06 49.5 11.1 57 141-197 131-190 (205)
315 TIGR02324 CP_lyasePhnL phospho 96.0 0.085 1.8E-06 49.9 11.6 56 142-197 155-213 (224)
316 cd03217 ABC_FeS_Assembly ABC-t 96.0 0.032 7E-07 51.8 8.5 119 71-197 26-168 (200)
317 TIGR01420 pilT_fam pilus retra 96.0 0.027 5.8E-07 57.1 8.5 113 71-197 122-234 (343)
318 cd02019 NK Nucleoside/nucleoti 96.0 0.0049 1.1E-07 46.4 2.4 21 73-93 1-21 (69)
319 PRK06067 flagellar accessory p 96.0 0.031 6.8E-07 53.3 8.6 101 59-164 13-130 (234)
320 PF07726 AAA_3: ATPase family 96.0 0.0041 8.8E-08 52.4 2.1 28 74-103 2-29 (131)
321 cd03253 ABCC_ATM1_transporter 96.0 0.049 1.1E-06 52.0 9.9 57 141-197 142-200 (236)
322 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.0 0.046 1E-06 51.8 9.5 124 71-197 48-206 (224)
323 PF00560 LRR_1: Leucine Rich R 95.9 0.0026 5.7E-08 35.9 0.6 18 375-392 2-19 (22)
324 TIGR03771 anch_rpt_ABC anchore 95.9 0.07 1.5E-06 50.5 10.6 56 142-197 119-177 (223)
325 cd03213 ABCG_EPDR ABCG transpo 95.9 0.041 8.8E-07 50.9 8.8 117 71-194 35-172 (194)
326 PRK06762 hypothetical protein; 95.9 0.006 1.3E-07 54.8 3.1 23 71-93 2-24 (166)
327 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.01 2.2E-07 55.8 4.7 23 71-93 29-51 (213)
328 PRK09544 znuC high-affinity zi 95.9 0.047 1E-06 52.8 9.5 127 71-197 30-185 (251)
329 COG1419 FlhF Flagellar GTP-bin 95.9 0.11 2.3E-06 52.6 12.1 58 71-129 203-262 (407)
330 KOG2123 Uncharacterized conser 95.9 0.00069 1.5E-08 63.9 -3.1 100 348-453 17-127 (388)
331 cd01121 Sms Sms (bacterial rad 95.9 0.028 6E-07 57.3 8.2 101 57-165 68-169 (372)
332 KOG1051 Chaperone HSP104 and r 95.9 0.041 9E-07 61.2 10.0 115 49-178 563-685 (898)
333 TIGR03740 galliderm_ABC gallid 95.9 0.061 1.3E-06 50.9 10.1 54 144-197 132-188 (223)
334 KOG0727 26S proteasome regulat 95.9 0.053 1.2E-06 50.7 9.0 51 49-101 156-217 (408)
335 PRK12597 F0F1 ATP synthase sub 95.9 0.014 3.1E-07 60.7 5.9 94 71-165 143-248 (461)
336 cd02024 NRK1 Nicotinamide ribo 95.9 0.013 2.8E-07 53.6 5.0 21 73-93 1-21 (187)
337 PRK13541 cytochrome c biogenes 95.9 0.073 1.6E-06 49.2 10.2 24 71-94 26-49 (195)
338 cd03236 ABC_RNaseL_inhibitor_d 95.9 0.058 1.3E-06 52.2 9.9 24 71-94 26-49 (255)
339 TIGR00150 HI0065_YjeE ATPase, 95.9 0.011 2.3E-07 50.7 4.1 40 55-94 6-45 (133)
340 PRK03839 putative kinase; Prov 95.8 0.0061 1.3E-07 55.6 2.8 21 73-93 2-22 (180)
341 cd03231 ABC_CcmA_heme_exporter 95.8 0.063 1.4E-06 49.9 9.6 124 71-194 26-186 (201)
342 PRK00889 adenylylsulfate kinas 95.8 0.025 5.5E-07 51.2 6.8 24 70-93 3-26 (175)
343 cd03264 ABC_drug_resistance_li 95.8 0.024 5.2E-07 53.2 6.9 57 141-197 135-193 (211)
344 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.8 0.062 1.4E-06 51.4 9.8 55 143-197 146-202 (238)
345 PRK05439 pantothenate kinase; 95.8 0.05 1.1E-06 53.8 9.2 81 69-155 84-166 (311)
346 KOG0735 AAA+-type ATPase [Post 95.8 0.022 4.8E-07 60.7 7.0 72 70-164 430-504 (952)
347 cd01122 GP4d_helicase GP4d_hel 95.8 0.095 2.1E-06 51.2 11.3 52 71-126 30-82 (271)
348 PRK12726 flagellar biosynthesi 95.8 0.1 2.2E-06 52.7 11.3 90 70-165 205-296 (407)
349 cd03254 ABCC_Glucan_exporter_l 95.8 0.12 2.7E-06 49.0 11.6 57 141-197 144-202 (229)
350 PRK08927 fliI flagellum-specif 95.8 0.022 4.9E-07 58.8 6.8 91 71-165 158-259 (442)
351 cd03278 ABC_SMC_barmotin Barmo 95.8 0.091 2E-06 48.7 10.3 20 73-92 24-43 (197)
352 cd03252 ABCC_Hemolysin The ABC 95.8 0.092 2E-06 50.2 10.7 54 144-197 146-201 (237)
353 TIGR00554 panK_bact pantothena 95.7 0.028 6E-07 55.1 7.1 80 69-154 60-141 (290)
354 COG1102 Cmk Cytidylate kinase 95.7 0.012 2.5E-07 51.3 3.9 44 73-129 2-45 (179)
355 PRK06217 hypothetical protein; 95.7 0.02 4.3E-07 52.4 5.8 22 73-94 3-24 (183)
356 PTZ00035 Rad51 protein; Provis 95.7 0.081 1.8E-06 53.3 10.6 108 57-165 104-224 (337)
357 PRK11247 ssuB aliphatic sulfon 95.7 0.099 2.2E-06 50.6 10.9 127 71-197 38-198 (257)
358 KOG0734 AAA+-type ATPase conta 95.7 0.072 1.6E-06 55.1 10.1 46 49-94 305-360 (752)
359 COG0488 Uup ATPase components 95.7 0.08 1.7E-06 56.4 11.0 119 74-197 351-500 (530)
360 cd03240 ABC_Rad50 The catalyti 95.7 0.047 1E-06 50.9 8.4 52 146-197 131-187 (204)
361 cd03258 ABC_MetN_methionine_tr 95.7 0.067 1.5E-06 51.0 9.6 57 141-197 145-205 (233)
362 TIGR00959 ffh signal recogniti 95.7 0.11 2.3E-06 54.1 11.5 24 70-93 98-121 (428)
363 COG0003 ArsA Predicted ATPase 95.7 0.014 3.1E-07 57.9 5.0 49 71-121 2-50 (322)
364 COG1136 SalX ABC-type antimicr 95.7 0.035 7.7E-07 51.9 7.3 126 71-198 31-208 (226)
365 PRK13531 regulatory ATPase Rav 95.7 0.01 2.2E-07 61.8 4.0 41 49-93 21-61 (498)
366 PRK13647 cbiO cobalt transport 95.7 0.075 1.6E-06 52.1 10.1 57 141-197 143-202 (274)
367 KOG0924 mRNA splicing factor A 95.7 0.068 1.5E-06 56.7 9.9 122 71-197 371-514 (1042)
368 cd03251 ABCC_MsbA MsbA is an e 95.7 0.099 2.1E-06 49.8 10.7 57 141-197 143-201 (234)
369 KOG0733 Nuclear AAA ATPase (VC 95.7 0.017 3.6E-07 60.6 5.5 125 49-197 512-661 (802)
370 TIGR01425 SRP54_euk signal rec 95.7 0.032 7E-07 57.5 7.6 24 70-93 99-122 (429)
371 PRK10463 hydrogenase nickel in 95.7 0.036 7.9E-07 54.0 7.5 91 69-165 102-195 (290)
372 cd03232 ABC_PDR_domain2 The pl 95.7 0.041 8.8E-07 50.8 7.6 118 71-194 33-169 (192)
373 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.054 1.2E-06 51.8 8.7 59 59-121 9-67 (237)
374 PRK00625 shikimate kinase; Pro 95.7 0.0077 1.7E-07 54.5 2.7 20 74-93 3-22 (173)
375 PRK09280 F0F1 ATP synthase sub 95.7 0.021 4.5E-07 59.3 6.1 93 71-165 144-249 (463)
376 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0089 1.9E-07 54.8 3.2 24 70-93 2-25 (188)
377 PRK12727 flagellar biosynthesi 95.7 0.034 7.3E-07 58.5 7.7 24 70-93 349-372 (559)
378 cd02027 APSK Adenosine 5'-phos 95.6 0.071 1.5E-06 46.9 8.8 21 73-93 1-21 (149)
379 PRK13545 tagH teichoic acids e 95.6 0.095 2.1E-06 55.4 11.0 124 71-197 50-207 (549)
380 TIGR00390 hslU ATP-dependent p 95.6 0.028 6E-07 57.4 6.8 75 49-125 13-103 (441)
381 PRK10418 nikD nickel transport 95.6 0.12 2.6E-06 50.0 11.1 57 141-197 145-205 (254)
382 PRK05022 anaerobic nitric oxid 95.6 0.031 6.8E-07 59.9 7.6 46 49-94 188-233 (509)
383 cd02028 UMPK_like Uridine mono 95.6 0.0085 1.8E-07 54.6 2.9 21 73-93 1-21 (179)
384 TIGR03411 urea_trans_UrtD urea 95.6 0.11 2.3E-06 49.9 10.7 57 141-197 148-206 (242)
385 PF08433 KTI12: Chromatin asso 95.6 0.014 3E-07 56.7 4.5 22 72-93 2-23 (270)
386 CHL00195 ycf46 Ycf46; Provisio 95.6 0.038 8.3E-07 58.3 8.0 45 49-93 229-281 (489)
387 COG2607 Predicted ATPase (AAA+ 95.6 0.11 2.5E-06 48.4 9.9 102 49-179 61-166 (287)
388 PRK10787 DNA-binding ATP-depen 95.6 0.033 7.2E-07 62.4 7.8 51 49-101 323-377 (784)
389 KOG1969 DNA replication checkp 95.6 0.028 6.2E-07 60.1 6.8 72 70-165 325-398 (877)
390 PF03205 MobB: Molybdopterin g 95.6 0.015 3.2E-07 50.6 4.1 38 72-111 1-39 (140)
391 PRK00279 adk adenylate kinase; 95.6 0.059 1.3E-06 50.7 8.5 20 74-93 3-22 (215)
392 PRK05922 type III secretion sy 95.6 0.043 9.4E-07 56.6 8.0 91 71-165 157-258 (434)
393 COG0396 sufC Cysteine desulfur 95.6 0.12 2.7E-06 47.9 10.0 58 141-198 149-209 (251)
394 COG1428 Deoxynucleoside kinase 95.6 0.02 4.2E-07 52.5 4.8 47 71-122 4-50 (216)
395 PRK10416 signal recognition pa 95.5 0.05 1.1E-06 54.3 8.2 24 70-93 113-136 (318)
396 cd02023 UMPK Uridine monophosp 95.5 0.0078 1.7E-07 55.8 2.4 21 73-93 1-21 (198)
397 COG0541 Ffh Signal recognition 95.5 0.094 2E-06 53.3 10.0 72 57-131 79-159 (451)
398 cd01136 ATPase_flagellum-secre 95.5 0.046 1E-06 54.4 7.9 91 71-165 69-170 (326)
399 TIGR03498 FliI_clade3 flagella 95.5 0.05 1.1E-06 56.1 8.3 92 71-165 140-241 (418)
400 COG5238 RNA1 Ran GTPase-activa 95.5 0.0062 1.3E-07 57.5 1.5 229 300-531 30-318 (388)
401 TIGR02868 CydC thiol reductant 95.5 0.076 1.6E-06 57.4 10.2 25 70-94 360-384 (529)
402 PTZ00185 ATPase alpha subunit; 95.5 0.054 1.2E-06 56.5 8.4 94 71-165 189-300 (574)
403 COG0563 Adk Adenylate kinase a 95.5 0.028 6.2E-07 51.0 5.8 96 73-178 2-101 (178)
404 cd03283 ABC_MutS-like MutS-lik 95.5 0.063 1.4E-06 49.8 8.2 22 72-93 26-47 (199)
405 PRK11147 ABC transporter ATPas 95.5 0.15 3.1E-06 56.5 12.4 55 141-197 161-217 (635)
406 TIGR03574 selen_PSTK L-seryl-t 95.5 0.025 5.4E-07 54.6 5.7 21 73-93 1-21 (249)
407 TIGR03305 alt_F1F0_F1_bet alte 95.5 0.019 4.1E-07 59.4 5.1 94 71-165 138-243 (449)
408 cd03300 ABC_PotA_N PotA is an 95.5 0.11 2.4E-06 49.5 10.1 57 141-197 135-195 (232)
409 PRK13643 cbiO cobalt transport 95.5 0.16 3.5E-06 50.1 11.6 57 141-197 149-208 (288)
410 PRK15056 manganese/iron transp 95.5 0.14 3E-06 50.1 11.0 57 141-197 147-206 (272)
411 cd01129 PulE-GspE PulE/GspE Th 95.4 0.056 1.2E-06 52.5 8.0 127 51-197 62-188 (264)
412 PRK12724 flagellar biosynthesi 95.4 0.036 7.9E-07 56.7 6.9 23 71-93 223-245 (432)
413 cd02021 GntK Gluconate kinase 95.4 0.1 2.2E-06 45.9 9.0 21 73-93 1-21 (150)
414 PF01583 APS_kinase: Adenylyls 95.4 0.015 3.2E-07 51.3 3.6 35 72-108 3-37 (156)
415 cd01132 F1_ATPase_alpha F1 ATP 95.4 0.041 8.9E-07 53.1 6.9 99 72-174 70-181 (274)
416 PRK15064 ABC transporter ATP-b 95.4 0.13 2.7E-06 55.7 11.5 55 141-197 160-216 (530)
417 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.12 2.6E-06 49.1 10.2 41 70-112 19-59 (229)
418 PRK00131 aroK shikimate kinase 95.4 0.011 2.5E-07 53.3 3.0 23 71-93 4-26 (175)
419 PRK06936 type III secretion sy 95.4 0.039 8.4E-07 57.0 7.0 91 71-165 162-263 (439)
420 PF00560 LRR_1: Leucine Rich R 95.4 0.0051 1.1E-07 34.7 0.4 22 397-418 1-22 (22)
421 TIGR02788 VirB11 P-type DNA tr 95.4 0.037 8.1E-07 55.2 6.8 114 71-197 144-257 (308)
422 TIGR03575 selen_PSTK_euk L-ser 95.4 0.098 2.1E-06 52.4 9.7 20 74-93 2-21 (340)
423 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.021 4.5E-07 53.2 4.6 119 71-197 29-155 (204)
424 PF12775 AAA_7: P-loop contain 95.4 0.031 6.8E-07 54.5 6.0 34 57-93 22-55 (272)
425 TIGR02322 phosphon_PhnN phosph 95.4 0.012 2.6E-07 53.6 3.0 23 72-94 2-24 (179)
426 KOG0736 Peroxisome assembly fa 95.4 0.087 1.9E-06 56.9 9.5 93 49-165 673-775 (953)
427 PRK09099 type III secretion sy 95.3 0.045 9.7E-07 56.8 7.3 92 71-165 163-264 (441)
428 PRK14269 phosphate ABC transpo 95.3 0.18 4E-06 48.4 11.3 57 141-197 147-205 (246)
429 TIGR03522 GldA_ABC_ATP gliding 95.3 0.19 4.1E-06 50.0 11.6 50 144-197 141-196 (301)
430 PRK15453 phosphoribulokinase; 95.3 0.082 1.8E-06 51.1 8.6 82 70-153 4-89 (290)
431 COG1223 Predicted ATPase (AAA+ 95.3 0.019 4.2E-07 53.9 4.1 51 49-101 122-179 (368)
432 PTZ00088 adenylate kinase 1; P 95.3 0.025 5.5E-07 53.6 5.0 20 74-93 9-28 (229)
433 PLN02318 phosphoribulokinase/u 95.3 0.022 4.7E-07 60.5 4.8 33 61-93 55-87 (656)
434 KOG0473 Leucine-rich repeat pr 95.3 0.00032 7E-09 64.4 -7.4 91 344-434 36-126 (326)
435 PRK13947 shikimate kinase; Pro 95.3 0.012 2.6E-07 53.1 2.7 21 73-93 3-23 (171)
436 PRK13634 cbiO cobalt transport 95.3 0.13 2.8E-06 50.9 10.2 57 141-197 150-210 (290)
437 cd03250 ABCC_MRP_domain1 Domai 95.3 0.35 7.5E-06 45.0 12.6 58 140-197 131-192 (204)
438 PRK14738 gmk guanylate kinase; 95.3 0.015 3.3E-07 54.3 3.4 31 63-93 5-35 (206)
439 TIGR01040 V-ATPase_V1_B V-type 95.3 0.04 8.7E-07 56.9 6.6 95 71-165 141-258 (466)
440 PF00158 Sigma54_activat: Sigm 95.3 0.05 1.1E-06 48.9 6.5 45 50-94 1-45 (168)
441 PRK07721 fliI flagellum-specif 95.3 0.056 1.2E-06 56.3 7.7 93 70-165 157-259 (438)
442 KOG2228 Origin recognition com 95.2 0.03 6.6E-07 54.6 5.3 144 48-194 24-183 (408)
443 TIGR01039 atpD ATP synthase, F 95.2 0.041 9E-07 56.9 6.6 93 71-165 143-248 (461)
444 cd01125 repA Hexameric Replica 95.2 0.078 1.7E-06 50.8 8.2 21 73-93 3-23 (239)
445 PF00910 RNA_helicase: RNA hel 95.2 0.0087 1.9E-07 49.4 1.3 20 74-93 1-20 (107)
446 PF13481 AAA_25: AAA domain; P 95.2 0.02 4.3E-07 52.8 3.9 92 72-165 33-152 (193)
447 PRK14264 phosphate ABC transpo 95.2 0.26 5.5E-06 49.1 12.0 57 141-197 205-263 (305)
448 PF03308 ArgK: ArgK protein; 95.2 0.02 4.3E-07 54.3 3.7 38 56-93 14-51 (266)
449 PF00154 RecA: recA bacterial 95.2 0.047 1E-06 54.1 6.6 99 71-177 53-153 (322)
450 cd01130 VirB11-like_ATPase Typ 95.2 0.03 6.4E-07 51.4 4.9 125 57-197 14-139 (186)
451 PRK09580 sufC cysteine desulfu 95.2 0.17 3.6E-06 48.7 10.4 57 141-197 150-209 (248)
452 PRK07196 fliI flagellum-specif 95.2 0.061 1.3E-06 55.6 7.5 91 71-165 155-256 (434)
453 PRK13639 cbiO cobalt transport 95.1 0.15 3.3E-06 49.9 10.1 57 141-197 142-201 (275)
454 COG3640 CooC CO dehydrogenase 95.1 0.027 5.9E-07 52.3 4.4 44 73-117 2-45 (255)
455 PRK05688 fliI flagellum-specif 95.1 0.052 1.1E-06 56.2 7.1 91 71-165 168-269 (451)
456 COG2274 SunT ABC-type bacterio 95.1 0.13 2.8E-06 56.9 10.5 54 144-197 617-673 (709)
457 PRK13949 shikimate kinase; Pro 95.1 0.016 3.4E-07 52.3 2.9 21 73-93 3-23 (169)
458 PRK12678 transcription termina 95.1 0.026 5.6E-07 59.5 4.8 92 72-165 417-514 (672)
459 COG4618 ArpD ABC-type protease 95.1 0.09 1.9E-06 54.3 8.5 22 72-93 363-384 (580)
460 PRK15439 autoinducer 2 ABC tra 95.1 0.18 4E-06 54.1 11.5 127 71-197 37-204 (510)
461 TIGR00708 cobA cob(I)alamin ad 95.1 0.054 1.2E-06 48.6 6.2 122 71-193 5-140 (173)
462 PRK07594 type III secretion sy 95.1 0.052 1.1E-06 56.1 6.9 91 71-165 155-256 (433)
463 cd02020 CMPK Cytidine monophos 95.1 0.014 2.9E-07 51.1 2.3 21 73-93 1-21 (147)
464 PRK10751 molybdopterin-guanine 95.1 0.021 4.5E-07 51.4 3.5 24 70-93 5-28 (173)
465 COG2842 Uncharacterized ATPase 95.1 0.13 2.9E-06 49.5 9.1 116 49-177 73-189 (297)
466 PRK10820 DNA-binding transcrip 95.1 0.083 1.8E-06 56.7 8.7 45 49-93 205-249 (520)
467 PRK05973 replicative DNA helic 95.1 0.093 2E-06 49.8 8.0 88 71-165 64-158 (237)
468 PRK13546 teichoic acids export 95.1 0.15 3.2E-06 49.6 9.7 127 71-197 50-207 (264)
469 PRK13409 putative ATPase RIL; 95.1 0.15 3.2E-06 55.7 10.6 124 71-197 365-518 (590)
470 cd03233 ABC_PDR_domain1 The pl 95.0 0.11 2.4E-06 48.3 8.4 24 71-94 33-56 (202)
471 PRK13651 cobalt transporter AT 95.0 0.17 3.8E-06 50.3 10.3 57 141-197 170-229 (305)
472 COG0467 RAD55 RecA-superfamily 95.0 0.021 4.5E-07 55.5 3.7 43 69-113 21-63 (260)
473 TIGR03263 guanyl_kin guanylate 95.0 0.018 3.9E-07 52.4 3.0 22 72-93 2-23 (180)
474 cd03243 ABC_MutS_homologs The 95.0 0.015 3.4E-07 54.1 2.6 22 72-93 30-51 (202)
475 PRK08769 DNA polymerase III su 95.0 0.34 7.3E-06 48.3 12.1 36 57-93 13-48 (319)
476 PRK06793 fliI flagellum-specif 95.0 0.065 1.4E-06 55.4 7.3 92 71-165 156-257 (432)
477 PRK14721 flhF flagellar biosyn 95.0 0.12 2.7E-06 53.2 9.3 24 70-93 190-213 (420)
478 COG4088 Predicted nucleotide k 95.0 0.014 3E-07 53.0 2.0 22 72-93 2-23 (261)
479 cd00071 GMPK Guanosine monopho 95.0 0.019 4.1E-07 49.8 2.9 21 73-93 1-21 (137)
480 cd00227 CPT Chloramphenicol (C 95.0 0.018 3.9E-07 52.3 2.9 22 72-93 3-24 (175)
481 cd01428 ADK Adenylate kinase ( 95.0 0.22 4.7E-06 45.8 10.2 20 74-93 2-21 (194)
482 PRK04328 hypothetical protein; 95.0 0.079 1.7E-06 51.1 7.5 42 70-113 22-63 (249)
483 TIGR01041 ATP_syn_B_arch ATP s 95.0 0.056 1.2E-06 56.4 6.7 94 72-165 142-249 (458)
484 PF07693 KAP_NTPase: KAP famil 94.9 0.067 1.5E-06 53.8 7.2 72 54-127 2-81 (325)
485 PF02374 ArsA_ATPase: Anion-tr 94.9 0.024 5.3E-07 56.3 3.9 47 71-119 1-47 (305)
486 PLN02348 phosphoribulokinase 94.9 0.11 2.5E-06 52.6 8.6 25 69-93 47-71 (395)
487 TIGR00416 sms DNA repair prote 94.9 0.16 3.5E-06 53.3 10.2 104 54-165 77-181 (454)
488 cd01134 V_A-ATPase_A V/A-type 94.9 0.073 1.6E-06 53.0 7.0 90 72-165 158-265 (369)
489 PRK05201 hslU ATP-dependent pr 94.9 0.046 1E-06 55.9 5.8 51 49-101 16-78 (443)
490 cd03248 ABCC_TAP TAP, the Tran 94.9 0.18 3.9E-06 47.7 9.7 24 71-94 40-63 (226)
491 TIGR03878 thermo_KaiC_2 KaiC d 94.9 0.093 2E-06 50.9 7.8 40 70-111 35-74 (259)
492 PF00625 Guanylate_kin: Guanyl 94.9 0.028 6.1E-07 51.4 4.0 36 71-108 2-37 (183)
493 COG1131 CcmA ABC-type multidru 94.9 0.28 6E-06 48.5 11.2 122 71-197 31-201 (293)
494 PRK14723 flhF flagellar biosyn 94.9 0.29 6.3E-06 54.1 12.2 23 71-93 185-207 (767)
495 PRK11388 DNA-binding transcrip 94.9 0.058 1.3E-06 59.7 7.1 46 49-94 326-371 (638)
496 TIGR03324 alt_F1F0_F1_al alter 94.9 0.059 1.3E-06 56.4 6.6 91 71-165 162-265 (497)
497 TIGR03497 FliI_clade2 flagella 94.9 0.063 1.4E-06 55.4 6.8 91 71-165 137-238 (413)
498 PRK03846 adenylylsulfate kinas 94.9 0.03 6.6E-07 51.9 4.1 24 70-93 23-46 (198)
499 COG0194 Gmk Guanylate kinase [ 94.9 0.032 7E-07 50.1 4.0 24 71-94 4-27 (191)
500 PRK14249 phosphate ABC transpo 94.9 0.26 5.6E-06 47.6 10.8 55 143-197 154-210 (251)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-60 Score=518.67 Aligned_cols=529 Identities=24% Similarity=0.310 Sum_probs=409.1
Q ss_pred cchHHHHHHHHHHHHHHhccCCCCCCCC-CC---CCch-hhhhccCCCCCCc---ceeeecccHHHHHHHHHcCCCCcEE
Q 039831 2 ALHDGLHSELIDIRNRTQQLPPGDNGFD-IS---EKSN-EIIRLLSEGQPPL---DISEFERGREKFFDLLIEGPSGLSV 73 (545)
Q Consensus 2 ~~r~~~~~~i~~~~~r~~~~~~~~~~~~-~~---~~~~-~~~~~~~~~~~~~---~~vGr~~~~~~i~~~L~~~~~~~~v 73 (545)
.++++.+..+..+.+|+..+.+...++. ++ .... ..++..++..+.. + ||.++.++++.+.|.+++. ++
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~i 181 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GI 181 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CE
Confidence 3567777888888888888888877776 32 1110 1111222222222 5 9999999999999998863 89
Q ss_pred EEEEcCCCChHHHHHHHHhcCcc-cccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcC
Q 039831 74 VAILDSSGFDKTAFAADTYNNNY-VKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT 152 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 152 (545)
+||+||||+||||||+.++|+.. ++++||.++||.||+.++...++++|+..++.... .......++++..|.+.|+
T Consensus 182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~--~~~~~~~~~~~~~i~~~L~ 259 (889)
T KOG4658|consen 182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE--EWEDKEEDELASKLLNLLE 259 (889)
T ss_pred EEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc--ccchhhHHHHHHHHHHHhc
Confidence 99999999999999999999977 99999999999999999999999999999988654 1223334899999999999
Q ss_pred CceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHhc-c--------------------------------
Q 039831 153 NKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLTS-L-------------------------------- 199 (545)
Q Consensus 153 ~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-L-------------------------------- 199 (545)
+|||+|||||||+ ..+|+.++.++|...+||||++|||++.||.. +
T Consensus 260 ~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~ 338 (889)
T KOG4658|consen 260 GKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSH 338 (889)
T ss_pred cCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccc
Confidence 9999999999999 99999999999998889999999999999988 2
Q ss_pred -cc-cccccc-------cchHHHhhhhhhccchH-HHHHHHHHcCCCCc------------------hhH------Hhcc
Q 039831 200 -EM-ENGEKI-------RLDSVLIGGPLIRLKHE-AWQFFILHYGSMPL------------------ETL------TQGK 245 (545)
Q Consensus 200 -~l-~~~~~i-------Plal~~~g~~L~~~~~~-~w~~~~~~~~~~~~------------------~~l------~~~y 245 (545)
.+ ++|+++ |||+.++|+.|+.+... +|.++...+.+... +.| |+.|
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLY 418 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHh
Confidence 23 455544 99999999999999998 99999998876622 111 3449
Q ss_pred cce-----EEcCcc---ceeecCCCCC-----ChHHHHHHHHHHHHHCCCccccc-----c-eEecccccC---------
Q 039831 246 FGL-----TVERQI---FSVAEGFIPY-----NSEETAEHYLKQLIHRGFIQATG-----F-VWMHDVDEE--------- 297 (545)
Q Consensus 246 ~~l-----~i~~~~---~wia~g~~~~-----~~~~~~~~~l~~L~~~sli~~~~-----~-~~~hdlv~~--------- 297 (545)
|++ +|+++. +|+||||+.+ +.++.|+.|+++|++++++.... . |.|||++++
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccc
Confidence 998 677776 9999999977 77899999999999999999976 2 999999999
Q ss_pred ----------------------CCCCeeEEEEEccCCCCCC--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCccc
Q 039831 298 ----------------------PPANFKRCIILGNQFDFFP--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLR 353 (545)
Q Consensus 298 ----------------------~~~~~r~l~~~~~~~~~~~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 353 (545)
....+|++++.++...... ..++ ++++|.+..+.. ++..+.. .+|.+++.|+
T Consensus 499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~--~L~tLll~~n~~-~l~~is~-~ff~~m~~Lr 574 (889)
T KOG4658|consen 499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP--KLRTLLLQRNSD-WLLEISG-EFFRSLPLLR 574 (889)
T ss_pred cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCC--ccceEEEeecch-hhhhcCH-HHHhhCcceE
Confidence 2346788999998887766 7777 899999998864 2444555 7799999999
Q ss_pred EEEccCCC-CCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCC-CCCcccHhhhcccccceeeecCccC
Q 039831 354 VLNMGSAV-LDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSS-HIDQSPEDIWMMQKLMHLNFGSITL 431 (545)
Q Consensus 354 ~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~l 431 (545)
+|||++|. +.++|..|++|.|||||+++++.+..+|.++++|+.|.+|++..+ .+..+|.....|++|++|.+.....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL 654 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence 99999887 789999999999999999999999999999999999999999999 6666677777799999999965432
Q ss_pred CCCcccCcCCcccccccccccc---CCCchhhcCCCCCCCEEEEecc-cCccccchhHhccCCCCCcEEEeecCCCC---
Q 039831 432 PAPPKNYSSSLKNLIFTSALNP---SSCTLDILFRLPSVRTLRISGD-LSYYQSGVSKSLCELHKLECLKLVNESKP--- 504 (545)
Q Consensus 432 p~~~~~~~~~l~~L~~L~~~~~---~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~--- 504 (545)
..+. ..++.+.+|++|..+.+ +......+..++.|+++...-. ........+..+..+++|+.|.+.. |.
T Consensus 655 ~~~~-~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~--~~~~e 731 (889)
T KOG4658|consen 655 SNDK-LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD--CGISE 731 (889)
T ss_pred ccch-hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc--CCCch
Confidence 2111 00144444444443333 2222234444444442222111 0123455556677777777777774 11
Q ss_pred ---------Ce---e-ec-------------c-CCCCCCCccEEEEeccCCchhhhhhhhccccce
Q 039831 505 ---------SR---M-VL-------------S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQ 543 (545)
Q Consensus 505 ---------~~---L-~l-------------P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~ 543 (545)
.. + .+ | |....|+|+.|.+..|...++|++....+..+.
T Consensus 732 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 732 IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 00 1 01 4 666789999999999999999999987766553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-44 Score=416.42 Aligned_cols=362 Identities=20% Similarity=0.218 Sum_probs=253.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe---cCC-----------CC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV---SLL-----------YD 114 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~-----------~~ 114 (545)
++|||+++++++..+|..+.+++++|+||||||+||||||+++|+ ++..+|++.+|+.. +.. ++
T Consensus 185 ~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~ 262 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYN 262 (1153)
T ss_pred cccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccc
Confidence 899999999999999976666799999999999999999999999 88899999888742 111 11
Q ss_pred -HHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 115 -FGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 115 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
...++++++.++..... ..... ...+++.+++||+||||||||+ ..+|+.+.....+.++||+||||||++
T Consensus 263 ~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 263 MKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred hhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 23455566666544322 11111 2467788999999999999999 999999998777778899999999999
Q ss_pred hHHhc-----------c---------------------cc-ccc-------ccccchHHHhhhhhhccchHHHHHHHHHc
Q 039831 194 TLLTS-----------L---------------------EM-ENG-------EKIRLDSVLIGGPLIRLKHEAWQFFILHY 233 (545)
Q Consensus 194 ~v~~~-----------L---------------------~l-~~~-------~~iPlal~~~g~~L~~~~~~~w~~~~~~~ 233 (545)
+++.. | ++ +++ ..+|||++++|+.|++++..+|+.+++++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99864 1 11 222 23399999999999998877999999999
Q ss_pred CCCCchhH---Hhc-ccceEE--cCcc-ceeecCCCCCChHHH----------HHHHHHHHHHCCCcccccc-eEecccc
Q 039831 234 GSMPLETL---TQG-KFGLTV--ERQI-FSVAEGFIPYNSEET----------AEHYLKQLIHRGFIQATGF-VWMHDVD 295 (545)
Q Consensus 234 ~~~~~~~l---~~~-y~~l~i--~~~~-~wia~g~~~~~~~~~----------~~~~l~~L~~~sli~~~~~-~~~hdlv 295 (545)
.....+++ ++- |.++.- .+.- +|+|++|.....+.+ ++..++.|+++||++.... +.|||++
T Consensus 415 ~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl 494 (1153)
T PLN03210 415 RNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLL 494 (1153)
T ss_pred HhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHH
Confidence 87666555 222 888832 3334 899998766411111 2234788999999988766 9999999
Q ss_pred cC---------------------------------CCCCeeEEEEEccCCCCCC------CcCCCCceeEE---------
Q 039831 296 EE---------------------------------PPANFKRCIILGNQFDFFP------LEYSYMYLQSF--------- 327 (545)
Q Consensus 296 ~~---------------------------------~~~~~r~l~~~~~~~~~~~------~~~~~~~lr~L--------- 327 (545)
++ ....++.+++......... ..+. +|+.|
T Consensus 495 ~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~--~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 495 QEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR--NLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc--cccEEEEecccccc
Confidence 98 0122333333322222110 2233 34443
Q ss_pred ----------------------EecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCC-
Q 039831 328 ----------------------LNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPS- 384 (545)
Q Consensus 328 ----------------------~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~- 384 (545)
...++. +..++ ..| .+.+|+.|++.+|.+..+|..++.+++|++|+++++.
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~---l~~lP--~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~ 646 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYP---LRCMP--SNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCC---CCCCC--CcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCC
Confidence 333322 23333 222 4577888888888877777777778888888887754
Q ss_pred CCccChhhhccccCcEEecCCC-CCCcccHhhhcccccceeeecCc
Q 039831 385 LKCLPSLLCTLLNLETLEMPSS-HIDQSPEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 385 i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~ 429 (545)
++.+| .++.+++|++|++++| .+..+|..++++++|+.|++++|
T Consensus 647 l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 647 LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 56666 3667777777777777 66777777777777777777655
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=3.4e-30 Score=255.43 Aligned_cols=210 Identities=27% Similarity=0.384 Sum_probs=160.2
Q ss_pred ecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc
Q 039831 53 FERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV 132 (545)
Q Consensus 53 r~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 132 (545)
||.++++|.+.|...+++.++|+|+||||+||||||.++|++..++++|+.++||.+++..+..+++.+|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998667899999999999999999999999666999999999999999999999999999999887541
Q ss_pred cccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHhc------------c-
Q 039831 133 RVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLTS------------L- 199 (545)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~------------L- 199 (545)
. ....+.++....+++.|+++++||||||||+ ...|+.+...++.+..||+||||||+..++.. |
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred c-ccccccccccccchhhhccccceeeeeeecc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 2456788899999999999999999999999 99999999888877789999999999998764 1
Q ss_pred ---------------c------c-cccccc-------cchHHHhhhhhhccchH-HHHHHHHHcCCCCc------hhH--
Q 039831 200 ---------------E------M-ENGEKI-------RLDSVLIGGPLIRLKHE-AWQFFILHYGSMPL------ETL-- 241 (545)
Q Consensus 200 ---------------~------l-~~~~~i-------Plal~~~g~~L~~~~~~-~w~~~~~~~~~~~~------~~l-- 241 (545)
. + +.+++| |||++++|++|+.+... +|+.+++++..... ..+
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1 222233 99999999999776544 89998877654331 111
Q ss_pred ---------------Hhcccce-----EEcCcc---ceeecCCCCC
Q 039831 242 ---------------TQGKFGL-----TVERQI---FSVAEGFIPY 264 (545)
Q Consensus 242 ---------------~~~y~~l-----~i~~~~---~wia~g~~~~ 264 (545)
++.||++ .|+++. +|+|+||+..
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 2227776 677776 9999999864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.8e-18 Score=199.65 Aligned_cols=189 Identities=23% Similarity=0.298 Sum_probs=123.6
Q ss_pred CCeeEEEEEccCCCCC-C-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCccccCCCCCC
Q 039831 300 ANFKRCIILGNQFDFF-P-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGLENLYLLK 376 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~-~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~ 376 (545)
.+++++.+.++..... + ..++ +|++|.+.++. +....+ ..+..+++|++|++++|.+. .+|..++++++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~--~L~~L~Ls~n~---~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIP--NLETLDLSNNM---LSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCEEECcCCccccccCccccC--CCCEEECcCCc---ccccCC-hHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 4567777766665422 2 3455 77777776665 333344 56677777777777777765 5677777777777
Q ss_pred EEEccCCCCC-ccChhhhccccCcEEecCCCCCC-cccHhhhcccccceeeecCc----cCCCCcccCcCCccccccccc
Q 039831 377 YLKLNIPSLK-CLPSLLCTLLNLETLEMPSSHID-QSPEDIWMMQKLMHLNFGSI----TLPAPPKNYSSSLKNLIFTSA 450 (545)
Q Consensus 377 ~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~----~lp~~~~~~~~~l~~L~~L~~ 450 (545)
+|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++| .+|..+ +++++|+.|.+
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L 267 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL----GNLKNLQYLFL 267 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH----hCCCCCCEEEC
Confidence 7777777654 45777777777777777777544 56777777777777777765 345555 67777777766
Q ss_pred ccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeec
Q 039831 451 LNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 451 ~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
..+ .+..+..+..+++|+.|++++|. ....+|..+.++++|+.|++++
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEECCC
Confidence 554 34455566667777777777665 4445666666677777777764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=4.3e-18 Score=196.53 Aligned_cols=243 Identities=16% Similarity=0.160 Sum_probs=136.6
Q ss_pred eEecccccCCCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-
Q 039831 289 VWMHDVDEEPPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD- 363 (545)
Q Consensus 289 ~~~hdlv~~~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~- 363 (545)
|...++..+....++.+.+.++.+.... ..++ +|+.|++.++.. ...++. ..+..+++|++|+|++|.++
T Consensus 58 c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~--~L~~L~Ls~n~~--~~~ip~-~~~~~l~~L~~L~Ls~n~l~~ 132 (968)
T PLN00113 58 CLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP--YIQTINLSNNQL--SGPIPD-DIFTTSSSLRYLNLSNNNFTG 132 (968)
T ss_pred CcCcceecCCCCcEEEEEecCCCccccCChHHhCCC--CCCEEECCCCcc--CCcCCh-HHhccCCCCCEEECcCCcccc
Confidence 4333343333456777777776654322 4455 777777776652 113333 44556777777777777665
Q ss_pred CCCccccCCCCCCEEEccCCCCC-ccChhhhccccCcEEecCCCCC-CcccHhhhcccccceeeecCcc----CCCCccc
Q 039831 364 QFPPGLENLYLLKYLKLNIPSLK-CLPSLLCTLLNLETLEMPSSHI-DQSPEDIWMMQKLMHLNFGSIT----LPAPPKN 437 (545)
Q Consensus 364 ~lp~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~~~~L~~L~~L~l~~~~----lp~~~~~ 437 (545)
.+|. +.+.+|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|. +|..+
T Consensus 133 ~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-- 208 (968)
T PLN00113 133 SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-- 208 (968)
T ss_pred ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH--
Confidence 3332 34566666666666654 4555666666666666666643 3455666666666666665552 34444
Q ss_pred CcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC----CC-------C
Q 039831 438 YSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE----SK-------P 504 (545)
Q Consensus 438 ~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~----~~-------~ 504 (545)
+++++|+.|.+..+ .+..+..++.+++|+.|++++|. ....+|..++++++|+.|+|+++ .. +
T Consensus 209 --~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 284 (968)
T PLN00113 209 --GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN--LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284 (968)
T ss_pred --cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce--eccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc
Confidence 55666666554443 33444555556666666665554 33344555555555555555541 00 0
Q ss_pred ---------Ceee--cc-CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 505 ---------SRMV--LS-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 505 ---------~~L~--lP-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
+.+. +| ++.++++|+.|++++|.+.+..+..+..++.|+.
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 2221 15 6677777777777777777666566666666654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=8.5e-20 Score=184.27 Aligned_cols=227 Identities=19% Similarity=0.198 Sum_probs=178.7
Q ss_pred CCeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCC
Q 039831 300 ANFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLK 376 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 376 (545)
.++.|+++..|....+- ..++ .||++++.++.-. ..+++ +.+.+++-|.+|||++|.+.+.|..+...+++-
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp--~LRsv~~R~N~LK-nsGiP--~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLP--RLRSVIVRDNNLK-NSGIP--TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccch--hhHHHhhhccccc-cCCCC--chhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 46788888888866544 5666 9999998887753 23444 677899999999999999999999999999999
Q ss_pred EEEccCCCCCccChhh-hccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCC-CcccCcCCcccccccccccc-
Q 039831 377 YLKLNIPSLKCLPSLL-CTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPA-PPKNYSSSLKNLIFTSALNP- 453 (545)
Q Consensus 377 ~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~-~~~~~~~~l~~L~~L~~~~~- 453 (545)
.|+|++|+|.++|.++ -+|..|-+|||++|.++.+|..+.+|.+|+.|.+++|.+-. .+ +.+..+++|+.|.+.+.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhccccc
Confidence 9999999999999875 68999999999999999999999999999999999985431 22 01145566666665554
Q ss_pred --CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC------------------CCC-Ceeec-c-
Q 039831 454 --SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE------------------SKP-SRMVL-S- 510 (545)
Q Consensus 454 --~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~------------------~~~-~~L~l-P- 510 (545)
....|..+..|.||+.+++++|. ...+|.++-++.+|+.|+||++ ... +.|.. |
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccC---CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchH
Confidence 34567788899999999999886 8889999999999999999983 011 22222 6
Q ss_pred CCCCCCCccEEEEeccCCchhhhhh
Q 039831 511 EYQFPPSLIQLSLSNTELMEDLINS 535 (545)
Q Consensus 511 ~l~~l~~L~~L~L~~~~l~~~~~~~ 535 (545)
.++.++.|+.|.+.+|++.-+.+|+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCcc
Confidence 6677777777777777777665554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=9.8e-19 Score=176.66 Aligned_cols=218 Identities=19% Similarity=0.193 Sum_probs=183.8
Q ss_pred CCeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC--CCCccccCCCC
Q 039831 300 ANFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD--QFPPGLENLYL 374 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~L~~ 374 (545)
..++.+.+.......++ ..+. +|..|.+.++. +.++. ..++.++.||.+++..|.+. .+|..|..|..
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lq--kLEHLs~~HN~---L~~vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQ--KLEHLSMAHNQ---LISVH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHh--hhhhhhhhhhh---hHhhh--hhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 46778888887777777 5556 77777777766 44443 56788999999999999987 68999999999
Q ss_pred CCEEEccCCCCCccChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCc---cCCCCcccCcCCccccccccc
Q 039831 375 LKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI---TLPAPPKNYSSSLKNLIFTSA 450 (545)
Q Consensus 375 L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~---~lp~~~~~~~~~l~~L~~L~~ 450 (545)
|..|||++|++++.|..+..-+++-+|+|++|++..+| +-+-+|+-|-+|+++.| .+|+.+ ..|..|++|.+
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~----RRL~~LqtL~L 180 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI----RRLSMLQTLKL 180 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH----HHHhhhhhhhc
Confidence 99999999999999999999999999999999999999 56789999999999988 679999 99999999988
Q ss_pred ccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec-c-CCCCCCCccEEEEecc
Q 039831 451 LNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-S-EYQFPPSLIQLSLSNT 526 (545)
Q Consensus 451 ~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P-~l~~l~~L~~L~L~~~ 526 (545)
.++ ....+..+..+++|+.|.+++.. .....+|.++..+.+|..+++|+ +.|.+ | .+-.+++|+.|+||+|
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~----N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE----NNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc----cCCCcchHHHhhhhhhheeccCcC
Confidence 776 34456677788888999998876 46778899999999999999997 56654 6 6667899999999999
Q ss_pred CCchhhh
Q 039831 527 ELMEDLI 533 (545)
Q Consensus 527 ~l~~~~~ 533 (545)
++++..+
T Consensus 256 ~iteL~~ 262 (1255)
T KOG0444|consen 256 KITELNM 262 (1255)
T ss_pred ceeeeec
Confidence 9887543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.59 E-value=1.4e-15 Score=153.12 Aligned_cols=230 Identities=19% Similarity=0.217 Sum_probs=147.7
Q ss_pred CCeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCc-cccCCCCC
Q 039831 300 ANFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPP-GLENLYLL 375 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L 375 (545)
.+++.+.+..|....++ .... ++..|++.++. +..+-. ..++.++.||+|||+.|.|+++|. ++..-.++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sg--hl~~L~L~~N~---I~sv~s-e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESG--HLEKLDLRHNL---ISSVTS-EELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred Ccceeeeeccchhhhccccccccc--ceeEEeeeccc---cccccH-HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 46778888888777776 4445 68888887776 555555 778888888888888888887764 35555788
Q ss_pred CEEEccCCCCCccCh-hhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccCC--C--CcccCcCCcccccccc
Q 039831 376 KYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLP--A--PPKNYSSSLKNLIFTS 449 (545)
Q Consensus 376 ~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp--~--~~~~~~~~l~~L~~L~ 449 (545)
++|+|++|.|+.+-. .+.+|.+|.+|.|+.|.++.+| ..|.+|++|+.|++..|.+- + .| ..|.+|+.|.
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF----qgL~Sl~nlk 251 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF----QGLPSLQNLK 251 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh----cCchhhhhhh
Confidence 888888888887743 4777888888888888888888 67777888888888877432 2 23 5667777766
Q ss_pred ccccCCCchh--hcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCC-CeeeccCCCCCCCccEEEEecc
Q 039831 450 ALNPSSCTLD--ILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP-SRMVLSEYQFPPSLIQLSLSNT 526 (545)
Q Consensus 450 ~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~L~lP~l~~l~~L~~L~L~~~ 526 (545)
+-.+.-..+. .|-.+.++++|++..|. ...--..++-+++.|+.|+|++| . .++++-.-+.+++|+.|+|++|
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEecccc
Confidence 5444222221 24456666666666665 22222245566666777777641 1 2333211122455555555555
Q ss_pred CCchhhhhhhhccccce
Q 039831 527 ELMEDLINSELETQVLQ 543 (545)
Q Consensus 527 ~l~~~~~~~l~~~~~l~ 543 (545)
.++..+...+..+..|+
T Consensus 328 ~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLE 344 (873)
T ss_pred ccccCChhHHHHHHHhh
Confidence 55555555554444443
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=4.1e-17 Score=140.19 Aligned_cols=153 Identities=17% Similarity=0.230 Sum_probs=124.9
Q ss_pred hcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceee
Q 039831 346 FKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLN 425 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 425 (545)
+..+.+.+.|.|++|.++.+|+.|..|.+|+.|++++|+|+++|.+|++++.|+.|++.-|.+..+|.+||.++.|..|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 45567778888999999988999999999999999999999999999999999999998888888998899999999998
Q ss_pred ecCc-----cCCCCcccCcCCccccccccccccC-CCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEee
Q 039831 426 FGSI-----TLPAPPKNYSSSLKNLIFTSALNPS-SCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 499 (545)
Q Consensus 426 l~~~-----~lp~~~~~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 499 (545)
+..| .+|..+ ..++-|+.|.+.+++ ...+.++++|++|+.|.+.++. .-++|..++.+..|++|++.
T Consensus 109 ltynnl~e~~lpgnf----f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd---ll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNF----FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND---LLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred ccccccccccCCcch----hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc---hhhCcHHHHHHHHHHHHhcc
Confidence 8754 567666 666666666665553 3467788888888888888875 77788888889999999988
Q ss_pred cCCCCCeeec
Q 039831 500 NESKPSRMVL 509 (545)
Q Consensus 500 ~~~~~~~L~l 509 (545)
+ ++|..
T Consensus 182 g----nrl~v 187 (264)
T KOG0617|consen 182 G----NRLTV 187 (264)
T ss_pred c----ceeee
Confidence 7 56654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=3.2e-16 Score=157.75 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=119.7
Q ss_pred CeeEEEEEccCCCCCC-CcCC-CCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCE
Q 039831 301 NFKRCIILGNQFDFFP-LEYS-YMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKY 377 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~-~~~~-~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~ 377 (545)
++.+|.+..|.+..+. ..+. +.+|-.|.+..+. +..++. ..|+++++|+.|+|..|.|... --.+..|..|+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr---ittLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR---ITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCc---ccccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 5678888888877766 3333 0144444444444 666776 7778888888888888776643 344556666666
Q ss_pred EEccCCCCCccChh-hhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccC----CCCcccCcCCcccccccccc
Q 039831 378 LKLNIPSLKCLPSL-LCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITL----PAPPKNYSSSLKNLIFTSAL 451 (545)
Q Consensus 378 L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~l----p~~~~~~~~~l~~L~~L~~~ 451 (545)
|.+..|.|.++.+. +-.+.++++|+|..|++..+. ..+..|++|++|+++.|.+ ++++ ....+|+.|++.
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W----sftqkL~~LdLs 325 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW----SFTQKLKELDLS 325 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh----hhcccceeEecc
Confidence 66666655555432 344555555555555555444 3344555555555554421 2233 333444444433
Q ss_pred cc--CCCchhhc------------------------CCCCCCCEEEEeccc-CccccchhHhccCCCCCcEEEeecCCCC
Q 039831 452 NP--SSCTLDIL------------------------FRLPSVRTLRISGDL-SYYQSGVSKSLCELHKLECLKLVNESKP 504 (545)
Q Consensus 452 ~~--~~~~~~~l------------------------~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 504 (545)
.+ .......| ..+++|++|++..|. ....++-...|..++.|++|.|.+
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g---- 401 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG---- 401 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC----
Confidence 33 11122223 344455555555544 112222233445555555555554
Q ss_pred Ceeec-c--CCCCCCCccEEEEeccCCchhhhhhhhcc
Q 039831 505 SRMVL-S--EYQFPPSLIQLSLSNTELMEDLINSELET 539 (545)
Q Consensus 505 ~~L~l-P--~l~~l~~L~~L~L~~~~l~~~~~~~l~~~ 539 (545)
+.+.- | .|.++++|+.|+|.+|.+.......+..+
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 34432 4 56666667777776666666555555444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=5.2e-17 Score=156.75 Aligned_cols=120 Identities=23% Similarity=0.289 Sum_probs=61.1
Q ss_pred eeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcccc-CCCCCCEEEc
Q 039831 302 FKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLE-NLYLLKYLKL 380 (545)
Q Consensus 302 ~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l 380 (545)
++++....+..+.++..+. .+++|.+.+...+.+..+ +.|.++..|..|+++.|.++.+|..++ +|.++..||+
T Consensus 185 L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nki~~l---Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELG--GLESLELLYLRRNKIRFL---PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHhcccchhhhhcCChhhc--chhhhHHHHhhhcccccC---CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence 3444444444455554444 444444444333322222 234555555555555555555555544 5555555555
Q ss_pred cCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeec
Q 039831 381 NIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFG 427 (545)
Q Consensus 381 ~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 427 (545)
+.|+++++|..++.|++|+.||+++|.+..+|.++|+| .|+.|-+.
T Consensus 260 RdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 260 RDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred cccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhc
Confidence 55555555555555555555555555555555555555 45554443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=1.9e-16 Score=152.99 Aligned_cols=211 Identities=21% Similarity=0.233 Sum_probs=114.7
Q ss_pred eEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEE
Q 039831 303 KRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLK 379 (545)
Q Consensus 303 r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 379 (545)
..+.++.+.....+ .... .+.++...++. +..++ +....+..|+.|+.++|.+.++|++++.+..|..|+
T Consensus 71 ~vl~~~~n~l~~lp~aig~l~--~l~~l~vs~n~---ls~lp--~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAIGELE--ALKSLNVSHNK---LSELP--EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred eEEEeccchhhhCCHHHHHHH--HHHHhhcccch---Hhhcc--HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 34455555544444 3333 44455444444 23333 455566666667777776666677777776777777
Q ss_pred ccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCc---cCCCCcccCcCCccccccccccccCCC
Q 039831 380 LNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI---TLPAPPKNYSSSLKNLIFTSALNPSSC 456 (545)
Q Consensus 380 l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~~~~ 456 (545)
..+|++.++|++++++..|..|++.+|+++.+|...-.|+.|++|+...| .+|+++ +.+.+|.-|.+..+.-.
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l----g~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL----GGLESLELLYLRRNKIR 219 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh----cchhhhHHHHhhhcccc
Confidence 77767777777776666677777777766666655555667777766554 566666 66666666655444333
Q ss_pred chhhcCCCCCCCEEEEecccCccccchhHhcc-CCCCCcEEEeecCCCCCeeec-c-CCCCCCCccEEEEeccCCchh
Q 039831 457 TLDILFRLPSVRTLRISGDLSYYQSGVSKSLC-ELHKLECLKLVNESKPSRMVL-S-EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 457 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~L~l-P-~l~~l~~L~~L~L~~~~l~~~ 531 (545)
.+++|+.+..|.+|++..+. .+.+|+... ++.+|..|+|+. +++.- | -++-+.+|++||+|+|.+++.
T Consensus 220 ~lPef~gcs~L~Elh~g~N~---i~~lpae~~~~L~~l~vLDLRd----Nklke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQ---IEMLPAEHLKHLNSLLVLDLRD----NKLKEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred cCCCCCccHHHHHHHhcccH---HHhhHHHHhcccccceeeeccc----cccccCchHHHHhhhhhhhcccCCccccC
Confidence 33344444444444444443 344443322 444444444443 22221 3 333344444444444444443
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-16 Score=136.18 Aligned_cols=158 Identities=23% Similarity=0.260 Sum_probs=138.9
Q ss_pred cccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCc---cCCCCcccCcCCccc
Q 039831 368 GLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI---TLPAPPKNYSSSLKN 444 (545)
Q Consensus 368 ~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~---~lp~~~~~~~~~l~~ 444 (545)
.+.++.+.+.|.+++|+++.+|+.|..|.+|+.|++++|.++++|.+++.|++|++|+++-| .+|.++ |.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF----GSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc----CCCch
Confidence 34578888999999999999999999999999999999999999999999999999999865 689999 99999
Q ss_pred ccccccccc---CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeecc-CCCCCCCccE
Q 039831 445 LIFTSALNP---SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVLS-EYQFPPSLIQ 520 (545)
Q Consensus 445 L~~L~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~lP-~l~~l~~L~~ 520 (545)
|+.|++..+ ....+..|..++.|+.|.++++. .+.+|..++++++|+.|.+..+ .-+.+| -++.+..|+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd---fe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND---FEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRE 177 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC---cccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHH
Confidence 999987655 34567778889999999999886 8899999999999999999852 333448 8899999999
Q ss_pred EEEeccCCchhhhhh
Q 039831 521 LSLSNTELMEDLINS 535 (545)
Q Consensus 521 L~L~~~~l~~~~~~~ 535 (545)
|.+.+|.++-.|+..
T Consensus 178 lhiqgnrl~vlppel 192 (264)
T KOG0617|consen 178 LHIQGNRLTVLPPEL 192 (264)
T ss_pred HhcccceeeecChhh
Confidence 999999999877654
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=1.2e-12 Score=152.46 Aligned_cols=219 Identities=21% Similarity=0.196 Sum_probs=134.4
Q ss_pred CCCCeeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCC-CCCCCccccCCCCCC
Q 039831 298 PPANFKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAV-LDQFPPGLENLYLLK 376 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~L~~L~ 376 (545)
.+.++|.+.+..+....++..+.+++|+.|.+.++. +..++ ..+..+++|+.|+|+++. +..+| .++.+++|+
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~---l~~L~--~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le 660 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK---LEKLW--DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLE 660 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc---ccccc--cccccCCCCCEEECCCCCCcCcCC-ccccCCccc
Confidence 355677788777776666622222377777776655 33333 345667777777777655 44555 366677777
Q ss_pred EEEccCCC-CCccChhhhccccCcEEecCCC-CCCcccHhhhcccccceeeecCcc------------------------
Q 039831 377 YLKLNIPS-LKCLPSLLCTLLNLETLEMPSS-HIDQSPEDIWMMQKLMHLNFGSIT------------------------ 430 (545)
Q Consensus 377 ~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~------------------------ 430 (545)
+|++++|. +..+|.+++++++|+.|++++| .++.+|..+ ++++|+.|++++|.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE 739 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc
Confidence 77777654 6667777777777777777776 666666544 56666666665541
Q ss_pred CCCCcccCcCCcc-------------------------------cccccccccc--CCCchhhcCCCCCCCEEEEecccC
Q 039831 431 LPAPPKNYSSSLK-------------------------------NLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLS 477 (545)
Q Consensus 431 lp~~~~~~~~~l~-------------------------------~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~ 477 (545)
+|..+ .++ +|+.|.+.++ ....|..++.+++|+.|++.+|.
T Consensus 740 lP~~~-----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~- 813 (1153)
T PLN03210 740 FPSNL-----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI- 813 (1153)
T ss_pred ccccc-----cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC-
Confidence 12111 112 3333333332 22356668888899999998886
Q ss_pred ccccchhHhccCCCCCcEEEeecC----CC-----C-Ceeec--------c-CCCCCCCccEEEEeccC-Cchh
Q 039831 478 YYQSGVSKSLCELHKLECLKLVNE----SK-----P-SRMVL--------S-EYQFPPSLIQLSLSNTE-LMED 531 (545)
Q Consensus 478 ~~~~~~~~~l~~l~~L~~L~L~~~----~~-----~-~~L~l--------P-~l~~l~~L~~L~L~~~~-l~~~ 531 (545)
....+|..+ ++++|+.|+|++. .. . +.|.+ | ++..+++|+.|+|++|+ +...
T Consensus 814 -~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 814 -NLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred -CcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 455666554 6778888888751 00 1 33333 7 77888888888888865 4443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=3.8e-12 Score=139.35 Aligned_cols=201 Identities=18% Similarity=0.247 Sum_probs=129.4
Q ss_pred CCCCeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCC
Q 039831 298 PPANFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLK 376 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 376 (545)
.+..++.+.+.+|.+..++ ..+. +|+.|.+.++. +..++. . + ...|+.|+|++|.+..+|..+. .+|+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~~--nL~~L~Ls~N~---LtsLP~-~-l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~ 265 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQG--NIKTLYANSNQ---LTSIPA-T-L--PDTIQEMELSINRITELPERLP--SALQ 265 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhcc--CCCEEECCCCc---cccCCh-h-h--hccccEEECcCCccCcCChhHh--CCCC
Confidence 3456777888777777666 4445 77888777665 444442 2 2 2367888888888777777664 4688
Q ss_pred EEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCcc---CCCCcccCcCCcccccccccccc
Q 039831 377 YLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSIT---LPAPPKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 377 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~---lp~~~~~~~~~l~~L~~L~~~~~ 453 (545)
+|++++|+++.+|..+. .+|++|++++|.+..+|..+. ++|++|++++|. +|..+ .++|+.|.+.++
T Consensus 266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l------~~sL~~L~Ls~N 335 (754)
T PRK15370 266 SLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL------PPGLKTLEAGEN 335 (754)
T ss_pred EEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc------cccceeccccCC
Confidence 88888888877777654 478888888887777775443 367777777763 34433 246666665544
Q ss_pred C-CCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeee-cc-CCCCCCCccEEEEeccCCch
Q 039831 454 S-SCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMV-LS-EYQFPPSLIQLSLSNTELME 530 (545)
Q Consensus 454 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~-lP-~l~~l~~L~~L~L~~~~l~~ 530 (545)
. ...+..+ .++|+.|++++|. ...+|..+. +.|+.|+|++ +.|. +| .+. ..|+.|++++|++..
T Consensus 336 ~Lt~LP~~l--~~sL~~L~Ls~N~---L~~LP~~lp--~~L~~LdLs~----N~Lt~LP~~l~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 336 ALTSLPASL--PPELQVLDVSKNQ---ITVLPETLP--PTITTLDVSR----NALTNLPENLP--AALQIMQASRNNLVR 402 (754)
T ss_pred ccccCChhh--cCcccEEECCCCC---CCcCChhhc--CCcCEEECCC----CcCCCCCHhHH--HHHHHHhhccCCccc
Confidence 2 1222223 2578888888876 344555442 5788888875 2221 25 432 368888888888886
Q ss_pred hh
Q 039831 531 DL 532 (545)
Q Consensus 531 ~~ 532 (545)
.|
T Consensus 403 LP 404 (754)
T PRK15370 403 LP 404 (754)
T ss_pred Cc
Confidence 54
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=2e-13 Score=132.05 Aligned_cols=208 Identities=18% Similarity=0.163 Sum_probs=139.1
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccC-CCCCccChh-hhccccCc
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNI-PSLKCLPSL-LCTLLNLE 399 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~-~~i~~lp~~-i~~L~~L~ 399 (545)
....+.+..+. +..+++ ..|+.+++||.|||++|.|+.+ |+.+..|..|..|-+.+ |+|+.+|.. +++|..|+
T Consensus 68 ~tveirLdqN~---I~~iP~-~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQ---ISSIPP-GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cceEEEeccCC---cccCCh-hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 45556665555 677887 8899999999999999998866 88888888887776665 788888874 67888888
Q ss_pred EEecCCCCCCccc-HhhhcccccceeeecCc---cCCC-CcccCcCCcccccccccccc---------------------
Q 039831 400 TLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI---TLPA-PPKNYSSSLKNLIFTSALNP--------------------- 453 (545)
Q Consensus 400 ~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~---~lp~-~~~~~~~~l~~L~~L~~~~~--------------------- 453 (545)
-|.+.-|++.-++ ..+..|++|..|.+..+ .++. .+ ..+..++++....+
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf----~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF----QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc----cchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 8888777777665 67778887777777644 2222 22 22333332211100
Q ss_pred -------------------------------------------CCCchhhcCCCCCCCEEEEecccCccccchhHhccCC
Q 039831 454 -------------------------------------------SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCEL 490 (545)
Q Consensus 454 -------------------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 490 (545)
..+...-|.+|++|++|++++|. ....-+.+|.+.
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~--i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK--ITRIEDGAFEGA 297 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc--cchhhhhhhcch
Confidence 11112225666777777777766 333344566777
Q ss_pred CCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 491 HKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 491 ~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
..++.|.|.. +++.- - .|.++.+|+.|+|++|+++...+..+.....|..
T Consensus 298 a~l~eL~L~~----N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 298 AELQELYLTR----NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hhhhhhhcCc----chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 7777777764 44432 2 5677899999999999999887777776666654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=7e-12 Score=137.28 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=35.9
Q ss_pred cccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCc
Q 039831 351 YLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 351 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~ 429 (545)
+|+.|++++|.++.+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC
Confidence 45555555555555554332 245555555555555554443 245555555555555554332 24555555544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=1e-11 Score=135.28 Aligned_cols=161 Identities=21% Similarity=0.162 Sum_probs=80.0
Q ss_pred cccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCcc
Q 039831 351 YLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 351 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~ 430 (545)
.|+.|++++|.++.+|.. +++|++|++++|.++.+|... .+|..|++++|.+..+|.. ..+|++|++++|.
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~ 353 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ 353 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCc
Confidence 455556666665555542 345666777766666665422 2344455555555555431 1356666666552
Q ss_pred ---CCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCc-----------------cccchhHhccCC
Q 039831 431 ---LPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSY-----------------YQSGVSKSLCEL 490 (545)
Q Consensus 431 ---lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----------------~~~~~~~~l~~l 490 (545)
+|... . +|+.|.+.++.-..++.+ ..+|+.|++++|.-. ....+|.. .
T Consensus 354 Ls~LP~lp----~---~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l---~ 421 (788)
T PRK15387 354 LASLPTLP----S---ELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML---P 421 (788)
T ss_pred cCCCCCCC----c---ccceehhhccccccCccc--ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcc---h
Confidence 23211 2 223332222210011111 123444444444300 02223321 1
Q ss_pred CCCcEEEeecCCCCCeee-cc-CCCCCCCccEEEEeccCCchhhhhhh
Q 039831 491 HKLECLKLVNESKPSRMV-LS-EYQFPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 491 ~~L~~L~L~~~~~~~~L~-lP-~l~~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
.+|+.|++++ +.+. +| .+.++++|+.|+|++|++++..+..+
T Consensus 422 ~~L~~L~Ls~----NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYR----NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhcc----CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2344455543 2222 28 78889999999999999998877765
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=6.9e-13 Score=140.78 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=154.1
Q ss_pred CCCeeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEE
Q 039831 299 PANFKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYL 378 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 378 (545)
..+++++....+........+.+.++..+++..+. +..++ ..+..+.+|+.+...+|.+..+|..+..+..|++|
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~---l~~lp--~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN---LSNLP--EWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred CcchheeeeccCcceeeccccccccceeeecchhh---hhcch--HHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 34556666666665533321222267777776655 33443 67778888888888888888888888888888888
Q ss_pred EccCCCCCccChhhhccccCcEEecCCCCCCcccHh-hhcccc-cceeeecCccCCC--CcccCcCCcccccccccccc-
Q 039831 379 KLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPED-IWMMQK-LMHLNFGSITLPA--PPKNYSSSLKNLIFTSALNP- 453 (545)
Q Consensus 379 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~-L~~L~l~~~~lp~--~~~~~~~~l~~L~~L~~~~~- 453 (545)
++.+|.+..+|+....++.|++|+|..|++..+|+. +..+.. |+.|+.+.+.++. ...+ ...+.|+.|.+.++
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e--~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE--NNHAALQELYLANNH 370 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc--hhhHHHHHHHHhcCc
Confidence 888888888888777888888888888888888853 333333 5666666553321 1100 24556777766665
Q ss_pred -CCCchhhcCCCCCCCEEEEecccCccccchh-HhccCCCCCcEEEeecC----------CC---------CCeeec-cC
Q 039831 454 -SSCTLDILFRLPSVRTLRISGDLSYYQSGVS-KSLCELHKLECLKLVNE----------SK---------PSRMVL-SE 511 (545)
Q Consensus 454 -~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~----------~~---------~~~L~l-P~ 511 (545)
+....+.+..+.+|+.|++++|. ...+| +.+.++..|+.|+||+| .+ .+.+.. |-
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNr---L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe 447 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNR---LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE 447 (1081)
T ss_pred ccccchhhhccccceeeeeecccc---cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh
Confidence 44455567778888888888876 55555 55778888888888874 00 022211 55
Q ss_pred CCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 512 YQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 512 l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
+..++.|+.+|+|.|.|+...++.....+.|+.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 556777777787777777766555544455554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=9.6e-13 Score=139.74 Aligned_cols=210 Identities=18% Similarity=0.194 Sum_probs=137.7
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
+++.|...++.. ... ..-..-.+|++++++.+.++.+|+.++.+.+|..+++.+|.+..+|..+...++|+.|+
T Consensus 220 ~l~~L~a~~n~l---~~~---~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 220 SLTALYADHNPL---TTL---DVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLS 293 (1081)
T ss_pred chheeeeccCcc---eee---ccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHH
Confidence 556666555553 211 11123346777788888877777777788888888888877777777777777788888
Q ss_pred cCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCcc-ccccccccccCCCchhhcC--CCCCCCEEEEecccCcc
Q 039831 403 MPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLK-NLIFTSALNPSSCTLDILF--RLPSVRTLRISGDLSYY 479 (545)
Q Consensus 403 l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~-~L~~L~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~ 479 (545)
+..|.++.+|.....++.|++|++..|.++.--..|+..+. .|+.|+...+.-......+ .++.|+.|.+.+|. .
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--L 371 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--L 371 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc--c
Confidence 87777777877777777888888876644321101112221 1333332211111111222 34457778888877 5
Q ss_pred ccchhHhccCCCCCcEEEeecCCCCCeee-cc--CCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 480 QSGVSKSLCELHKLECLKLVNESKPSRMV-LS--EYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 480 ~~~~~~~l~~l~~L~~L~L~~~~~~~~L~-lP--~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
.+.....|.++++|+.|+|++ ++|. +| .+.+++.|+.|+||+|+|+..| .....+.+|++|
T Consensus 372 td~c~p~l~~~~hLKVLhLsy----NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL 435 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSY----NRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTL 435 (1081)
T ss_pred cccchhhhccccceeeeeecc----cccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHH
Confidence 555556788999999999998 6665 37 6788999999999999999988 556666666654
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.8e-12 Score=130.93 Aligned_cols=149 Identities=25% Similarity=0.307 Sum_probs=108.7
Q ss_pred hhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccce
Q 039831 344 IFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMH 423 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~ 423 (545)
..++.+..|..+.|..|.+..+|..+++|..|.||+|+.|++..+|..++.|+ |+.|-+++|+++.+|..++.++.|.+
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAH 170 (722)
T ss_pred hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHH
Confidence 55666777777777777777778888888888888888888888888787775 78888888888888877777777888
Q ss_pred eeecCc---cCCCCcccCcCCcccccccccccc-CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEee
Q 039831 424 LNFGSI---TLPAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 499 (545)
Q Consensus 424 L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 499 (545)
|+.+.| .+|..+ +.+.+|+.|....+ -...++++..|+ |.+|++++|+ ...+|..|.+|++|++|-|.
T Consensus 171 ld~s~nei~slpsql----~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNk---is~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 171 LDVSKNEIQSLPSQL----GYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNK---ISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hhhhhhhhhhchHHh----hhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCc---eeecchhhhhhhhheeeeec
Confidence 887776 556666 77777776664443 334566666554 7777777765 66677777777777777777
Q ss_pred cC
Q 039831 500 NE 501 (545)
Q Consensus 500 ~~ 501 (545)
+|
T Consensus 243 nN 244 (722)
T KOG0532|consen 243 NN 244 (722)
T ss_pred cC
Confidence 63
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.14 E-value=2e-10 Score=125.32 Aligned_cols=171 Identities=18% Similarity=0.097 Sum_probs=111.6
Q ss_pred CCCeeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEE
Q 039831 299 PANFKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYL 378 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 378 (545)
+..++.|.+..|.+..++...+ +|+.|.+.++. +..++. ..++|+.|++++|.++.+|... .+|+.|
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~lp~--~Lk~LdLs~N~---LtsLP~-----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L 287 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPALPP--ELRTLEVSGNQ---LTSLPV-----LPPGLLELSIFSNPLTHLPALP---SGLCKL 287 (788)
T ss_pred hcCCCEEEccCCcCCCCCCCCC--CCcEEEecCCc---cCcccC-----cccccceeeccCCchhhhhhch---hhcCEE
Confidence 3467788888877776665556 88888887765 444432 1357788888888887776532 567788
Q ss_pred EccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCccccccccccccCCCch
Q 039831 379 KLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTL 458 (545)
Q Consensus 379 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~ 458 (545)
++++|+++.+|.. +++|+.|++++|.+..+|... .+|+.|++++|.+. ++. .-..+|+.|++.++.-..+
T Consensus 288 ~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP---~lp~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 288 WIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLP---TLPSGLQELSVSDNQLASL 357 (788)
T ss_pred ECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccCccc-ccc---ccccccceEecCCCccCCC
Confidence 8888888888763 467888899888888887532 35777778777442 120 1124677777665522222
Q ss_pred hhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeec
Q 039831 459 DILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 459 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
+.+ ..+|+.|++++|. ...+|.. ..+|+.|+|++
T Consensus 358 P~l--p~~L~~L~Ls~N~---L~~LP~l---~~~L~~LdLs~ 391 (788)
T PRK15387 358 PTL--PSELYKLWAYNNR---LTSLPAL---PSGLKELIVSG 391 (788)
T ss_pred CCC--Ccccceehhhccc---cccCccc---ccccceEEecC
Confidence 222 3467888888776 3445532 35788888886
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.8e-12 Score=128.63 Aligned_cols=177 Identities=19% Similarity=0.238 Sum_probs=143.3
Q ss_pred CCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeec
Q 039831 348 RFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFG 427 (545)
Q Consensus 348 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 427 (545)
.+.--...||+.|.+.++|..++.+..|..|.|..|.+..+|..+++|..|.+||++.|.+..+|..+..|+ |+.|-++
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 344455678899999999999998889999999999999999999999999999999999999998888887 8888888
Q ss_pred Cc---cCCCCcccCcCCcccccccccccc-CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCC
Q 039831 428 SI---TLPAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 503 (545)
Q Consensus 428 ~~---~lp~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 503 (545)
+| .+|+++ +.+..|..|+...+ ....+..++.+..|+.|.+..+. ...+|..+..| .|.+|++++
T Consensus 152 NNkl~~lp~~i----g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~---l~~lp~El~~L-pLi~lDfSc--- 220 (722)
T KOG0532|consen 152 NNKLTSLPEEI----GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH---LEDLPEELCSL-PLIRLDFSC--- 220 (722)
T ss_pred cCccccCCccc----ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh---hhhCCHHHhCC-ceeeeeccc---
Confidence 76 578888 76666666665444 34467778888888888888775 77788888866 788899975
Q ss_pred CCeeecc-CCCCCCCccEEEEeccCCchhhhhhh
Q 039831 504 PSRMVLS-EYQFPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 504 ~~~L~lP-~l~~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
++..+|| .|.++..|++|.|.+|.|..-|.++.
T Consensus 221 Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 221 NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred CceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 2444558 88999999999999999988777664
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=2e-10 Score=115.47 Aligned_cols=227 Identities=18% Similarity=0.087 Sum_probs=143.2
Q ss_pred eeEEEEEccCCCCC-----C---CcCCCCceeEEEecCCCCCC---CCCCcchhhhcCCCcccEEEccCCCCC-CCCccc
Q 039831 302 FKRCIILGNQFDFF-----P---LEYSYMYLQSFLNHSSKSNH---LNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGL 369 (545)
Q Consensus 302 ~r~l~~~~~~~~~~-----~---~~~~~~~lr~L~~~~~~~~~---~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i 369 (545)
++.+.+.++..... . ...+ .++.+.+.++.... ...... ..+..+++|+.|++++|.+. ..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~--~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQP--SLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCC--CceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHH
Confidence 56667776665321 1 3444 67777776655320 001122 45677889999999999886 345555
Q ss_pred cCCCC---CCEEEccCCCCCc-----cChhhhcc-ccCcEEecCCCCCC-----cccHhhhcccccceeeecCccCCC-C
Q 039831 370 ENLYL---LKYLKLNIPSLKC-----LPSLLCTL-LNLETLEMPSSHID-----QSPEDIWMMQKLMHLNFGSITLPA-P 434 (545)
Q Consensus 370 ~~L~~---L~~L~l~~~~i~~-----lp~~i~~L-~~L~~L~l~~~~l~-----~lp~~~~~L~~L~~L~l~~~~lp~-~ 434 (545)
..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.+. .++..+..+++|++|++++|.+.. +
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 55555 9999999988762 33456666 88999999999766 345567777889999998875531 1
Q ss_pred ---cccCcCCccccccccccccCC--C----chhhcCCCCCCCEEEEecccCc--cccchhHhc-cCCCCCcEEEeecCC
Q 039831 435 ---PKNYSSSLKNLIFTSALNPSS--C----TLDILFRLPSVRTLRISGDLSY--YQSGVSKSL-CELHKLECLKLVNES 502 (545)
Q Consensus 435 ---~~~~~~~l~~L~~L~~~~~~~--~----~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l-~~l~~L~~L~L~~~~ 502 (545)
+.+.+..+++|+.|++.++.- . ....+..+++|+.|++++|... ....+...+ ...+.|++|++++
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~-- 259 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC-- 259 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC--
Confidence 100014445788777665521 1 2233567788999999998611 111222221 1347999999986
Q ss_pred CCCeee------cc-CCCCCCCccEEEEeccCCchhhhhh
Q 039831 503 KPSRMV------LS-EYQFPPSLIQLSLSNTELMEDLINS 535 (545)
Q Consensus 503 ~~~~L~------lP-~l~~l~~L~~L~L~~~~l~~~~~~~ 535 (545)
..+. ++ .+..+++|+.|++++|.+..++...
T Consensus 260 --n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 260 --NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred --CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 3332 12 4455689999999999999764433
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=5.3e-10 Score=116.03 Aligned_cols=178 Identities=25% Similarity=0.283 Sum_probs=128.2
Q ss_pred hhcCCCcccEEEccCCCCCCCCccccCCC-CCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccce
Q 039831 345 FFKRFKYLRVLNMGSAVLDQFPPGLENLY-LLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMH 423 (545)
Q Consensus 345 ~~~~l~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~ 423 (545)
....++.+..|++.++.++.+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 34555778888888888888888777774 88888888888888877788888888888888888888877778888888
Q ss_pred eeecCc---cCCCCcccCcCCcccccccccccc-CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEee
Q 039831 424 LNFGSI---TLPAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 499 (545)
Q Consensus 424 L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 499 (545)
|+++++ .+|..+ +.+..|++|....+ ....+..+..++++..|.+.++. ...++..++.++.|+.|+++
T Consensus 191 L~ls~N~i~~l~~~~----~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 191 LDLSGNKISDLPPEI----ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred eeccCCccccCchhh----hhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccchhccccccceeccc
Confidence 888877 455554 45666777776655 34455566677777777755554 44446677778888888887
Q ss_pred cCCCCCeeec-cCCCCCCCccEEEEeccCCchhhh
Q 039831 500 NESKPSRMVL-SEYQFPPSLIQLSLSNTELMEDLI 533 (545)
Q Consensus 500 ~~~~~~~L~l-P~l~~l~~L~~L~L~~~~l~~~~~ 533 (545)
+ +.+.- +.++.+.+|+.|+++++.+...+.
T Consensus 264 ~----n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 264 N----NQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred c----ccccccccccccCccCEEeccCccccccch
Confidence 5 33322 245677888888888887765433
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=7.4e-10 Score=123.42 Aligned_cols=196 Identities=20% Similarity=0.159 Sum_probs=137.4
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCC--CCCCCcc-ccCCCCCCEEEccCCC-CCccChhhhccccC
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAV--LDQFPPG-LENLYLLKYLKLNIPS-LKCLPSLLCTLLNL 398 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--l~~lp~~-i~~L~~L~~L~l~~~~-i~~lp~~i~~L~~L 398 (545)
.+|...+.++... .+. .-...+.|++|-+.+|. +..++.. +..++.|++|||++|. +.++|++|++|.+|
T Consensus 524 ~~rr~s~~~~~~~---~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE---HIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred heeEEEEeccchh---hcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 5666666666632 221 12334479999999986 5666544 7789999999999875 89999999999999
Q ss_pred cEEecCCCCCCcccHhhhcccccceeeecCc---cCCCCcccCcCCcccccccccccc----CCCchhhcCCCCCCCEEE
Q 039831 399 ETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI---TLPAPPKNYSSSLKNLIFTSALNP----SSCTLDILFRLPSVRTLR 471 (545)
Q Consensus 399 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~----~~~~~~~l~~l~~L~~L~ 471 (545)
++|+++++.+.++|.++++|++|.+|++..+ ..++++ +..|++|++|.+... +...+.++..|.+|+.|.
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i---~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI---LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccch---hhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 9999999999999999999999999999865 233344 155889999876544 455667777888888777
Q ss_pred EecccCccccchhHhccCCCCCcEEEeec--CCCC-Ceeecc-CCCCCCCccEEEEeccCCchhhh
Q 039831 472 ISGDLSYYQSGVSKSLCELHKLECLKLVN--ESKP-SRMVLS-EYQFPPSLIQLSLSNTELMEDLI 533 (545)
Q Consensus 472 l~~~~~~~~~~~~~~l~~l~~L~~L~L~~--~~~~-~~L~lP-~l~~l~~L~~L~L~~~~l~~~~~ 533 (545)
+.... . .+...+..+..|.++...- +.+. ..+ + .+..+.+|+.|.+.+|...+..+
T Consensus 675 ~~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 675 ITISS---V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred eecch---h-HhHhhhhhhHHHHHHhHhhhhccccccee--ecccccccCcceEEEEcCCCchhhc
Confidence 76544 2 2223334444444332220 0011 111 3 66779999999999999976443
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=1.9e-10 Score=111.74 Aligned_cols=221 Identities=18% Similarity=0.165 Sum_probs=167.4
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccC-CCCCCCCcc-ccC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGS-AVLDQFPPG-LEN 371 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp~~-i~~ 371 (545)
.+.....+.+..|.+..++ ..++ +||.|++..+. +..+-+ ..|..++.|..|-+.+ |.|+.+|.. ++.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~--~LRrLdLS~N~---Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLH--RLRRLDLSKNN---ISFIAP-DAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchh--hhceecccccc---hhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 6788889999999999888 4555 88888888877 566777 8999999988887666 779999865 778
Q ss_pred CCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCcccH-hhhcccccceeeecCc--------------------
Q 039831 372 LYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSPE-DIWMMQKLMHLNFGSI-------------------- 429 (545)
Q Consensus 372 L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~-------------------- 429 (545)
|..|+-|.+.-|++..++. .+..|++|..|.+.+|.++.++. +|..+.+++++.+..+
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 8888888888888887754 46788888888888888888874 6777777777766400
Q ss_pred ----------------------------------------cCCCCc--ccCcCCcccccccccccc--CCCchhhcCCCC
Q 039831 430 ----------------------------------------TLPAPP--KNYSSSLKNLIFTSALNP--SSCTLDILFRLP 465 (545)
Q Consensus 430 ----------------------------------------~lp~~~--~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~ 465 (545)
..|..+ ...|+.|++|++|++.++ +......|..+.
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 001110 011377888888887776 344455688889
Q ss_pred CCCEEEEecccCccccchh-HhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEeccCCchh
Q 039831 466 SVRTLRISGDLSYYQSGVS-KSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~~ 531 (545)
.+++|.+..|+ .+.+. ..|.++..|+.|+|.+ +.+.- | .|..+..|..|.|-.|.+..+
T Consensus 299 ~l~eL~L~~N~---l~~v~~~~f~~ls~L~tL~L~~----N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 299 ELQELYLTRNK---LEFVSSGMFQGLSGLKTLSLYD----NQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhcCcch---HHHHHHHhhhccccceeeeecC----CeeEEEecccccccceeeeeehccCcccCc
Confidence 99999999887 33333 5688899999999987 66655 7 788888999999998887764
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=6e-10 Score=111.98 Aligned_cols=222 Identities=19% Similarity=0.149 Sum_probs=138.4
Q ss_pred CeeEEEEEccCCCC--C------C--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCc---ccEEEccCCCCCC---
Q 039831 301 NFKRCIILGNQFDF--F------P--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKY---LRVLNMGSAVLDQ--- 364 (545)
Q Consensus 301 ~~r~l~~~~~~~~~--~------~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~---L~~L~L~~~~l~~--- 364 (545)
.++++.+..+.... . . ..++ +++.|.+.++.. ..... ..+..+.. |+.|++++|.++.
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~---~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGC--GLQELDLSDNAL---GPDGC-GVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcC--ceeEEEccCCCC---ChhHH-HHHHHHhccCcccEEEeeCCccchHHH
Confidence 35666666555441 0 0 3456 888888877663 22222 44444444 9999999988762
Q ss_pred --CCccccCC-CCCCEEEccCCCCC-----ccChhhhccccCcEEecCCCCCC-----cccHhhhcccccceeeecCccC
Q 039831 365 --FPPGLENL-YLLKYLKLNIPSLK-----CLPSLLCTLLNLETLEMPSSHID-----QSPEDIWMMQKLMHLNFGSITL 431 (545)
Q Consensus 365 --lp~~i~~L-~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~-----~lp~~~~~L~~L~~L~l~~~~l 431 (545)
+...+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|.+. .++..+..+++|++|++++|.+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 23455666 88899999998876 34555677788999999988766 3455566677899999987754
Q ss_pred CC----CcccCcCCccccccccccccC--CCchhhcC-----CCCCCCEEEEecccCc--cccchhHhccCCCCCcEEEe
Q 039831 432 PA----PPKNYSSSLKNLIFTSALNPS--SCTLDILF-----RLPSVRTLRISGDLSY--YQSGVSKSLCELHKLECLKL 498 (545)
Q Consensus 432 p~----~~~~~~~~l~~L~~L~~~~~~--~~~~~~l~-----~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~L 498 (545)
.+ .+...+..+++|+.|++.++. ...+..+. ..++|++|++.+|... ....+...+..+++|+.+++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 21 111112566778888766552 11222222 2478999999998721 33556677778899999999
Q ss_pred ecCCCC-Ce-eecc-CCCCC-CCccEEEEeccCC
Q 039831 499 VNESKP-SR-MVLS-EYQFP-PSLIQLSLSNTEL 528 (545)
Q Consensus 499 ~~~~~~-~~-L~lP-~l~~l-~~L~~L~L~~~~l 528 (545)
+++... .. -.+. .+... ++|+.|++.+|.+
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 863121 10 0012 22223 6788888877653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2.8e-09 Score=95.84 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=28.3
Q ss_pred hcCCCcccEEEccCCCCCCCCcccc-CCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhh-hcccccce
Q 039831 346 FKRFKYLRVLNMGSAVLDQFPPGLE-NLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDI-WMMQKLMH 423 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~-~~L~~L~~ 423 (545)
+.+...++.|+|.+|.|+.+ +.++ .+.+|+.|++++|.|++++ .+..+++|++|++++|.++.++..+ ..+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44555688999999998865 3455 5788999999999998885 5788899999999999988887655 46889999
Q ss_pred eeecCccCC
Q 039831 424 LNFGSITLP 432 (545)
Q Consensus 424 L~l~~~~lp 432 (545)
|++++|.+.
T Consensus 93 L~L~~N~I~ 101 (175)
T PF14580_consen 93 LYLSNNKIS 101 (175)
T ss_dssp EE-TTS---
T ss_pred EECcCCcCC
Confidence 999887653
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.80 E-value=4.2e-08 Score=101.79 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=97.1
Q ss_pred ceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecCCCCHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSLLYDFGKILEDIIK 124 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~ 124 (545)
.++||++++++|...+... +...+.+.|+|++|+|||++++.+++ ..+... -..++|......+...++..++.
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 7999999999999998542 23345678999999999999999998 443332 23556666666778889999999
Q ss_pred HhCCCCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCCCh------hhHHHHHhhCCCCCCCcE--EEEecCChh
Q 039831 125 SVMPPSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFHYS------EMWSDVVELLPDDQNGSR--VLILVTEPT 194 (545)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~l~~~~~~~~~gs~--iivTtR~~~ 194 (545)
++..... .....+.++..+.+.+.+. +++.+||+|+++. . +.+..+...... ..+++ +|.++....
T Consensus 109 ~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~-l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 109 QLFGHPP--PSSGLSFDELFDKIAEYLDERDRVLIVALDDINY-LFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HhcCCCC--CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH-hhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 9976322 1123456777778877775 4578999999986 3 223333333222 12333 677776655
Q ss_pred HHh
Q 039831 195 LLT 197 (545)
Q Consensus 195 v~~ 197 (545)
+..
T Consensus 185 ~~~ 187 (394)
T PRK00411 185 FLY 187 (394)
T ss_pred hhh
Confidence 444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=5.9e-09 Score=93.72 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhc-CCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhh-hccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFK-RFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLL-CTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i-~~L~~L~~ 400 (545)
++|.|.+.++.. ..+ ..+. .+.+|++|+|++|.++.+. .+..+++|+.|++++|.|+++++.+ ..+++|++
T Consensus 20 ~~~~L~L~~n~I---~~I---e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQI---STI---ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccc---ccc---cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 678888877773 333 2233 5778999999999988764 5778899999999999999887666 46899999
Q ss_pred EecCCCCCCccc--HhhhcccccceeeecCccCCCC--cccC-cCCcccccccccccc
Q 039831 401 LEMPSSHIDQSP--EDIWMMQKLMHLNFGSITLPAP--PKNY-SSSLKNLIFTSALNP 453 (545)
Q Consensus 401 L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~lp~~--~~~~-~~~l~~L~~L~~~~~ 453 (545)
|++++|.+..+. ..+..+++|++|++.+|.+... .+.| +..+++|+.|+...+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 999999776664 4577888999999988754321 1000 255667777766555
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=1e-08 Score=106.33 Aligned_cols=165 Identities=27% Similarity=0.336 Sum_probs=130.4
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCC-cccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFK-YLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETL 401 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 401 (545)
.+..|.+.++. +..+. +....++ +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+.+.+|+.|
T Consensus 117 ~l~~L~l~~n~---i~~i~--~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNN---ITDIP--PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcc---cccCc--cccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 67788777766 34443 3344453 899999999999999888999999999999999999999888789999999
Q ss_pred ecCCCCCCcccHhhhcccccceeeecCc---cCCCCcccCcCCccccccccccccCC-CchhhcCCCCCCCEEEEecccC
Q 039831 402 EMPSSHIDQSPEDIWMMQKLMHLNFGSI---TLPAPPKNYSSSLKNLIFTSALNPSS-CTLDILFRLPSVRTLRISGDLS 477 (545)
Q Consensus 402 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 477 (545)
++++|.+..+|..+..+.+|..|.++++ ..+..+ .++.++..|....+.. ..+..++.+++++.|+++++.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~----~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~- 266 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL----SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ- 266 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhh----hhcccccccccCCceeeeccchhccccccceecccccc-
Confidence 9999999999987777778999999887 455566 7777777776444422 225667888889999999887
Q ss_pred ccccchhHhccCCCCCcEEEeec
Q 039831 478 YYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 478 ~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
...++. ++.+.+|+.|++++
T Consensus 267 --i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 267 --ISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred --cccccc-ccccCccCEEeccC
Confidence 444444 88889999999986
No 33
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.69 E-value=9e-08 Score=98.23 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=81.9
Q ss_pred ceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc------ceeEEEEecCCCCHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF------DCLAWVRVSLLYDFGKILE 120 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~ 120 (545)
+++||++++++|...+... +...+.+.|+|++|+|||++++++++. ..... -..+||......+...++.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 7999999999999998641 223457889999999999999999983 32211 1356777777777888999
Q ss_pred HHHHHhCCCCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC
Q 039831 121 DIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFH 165 (545)
Q Consensus 121 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~ 165 (545)
.|+.++............+.++....+.+.+. +++++||+|+++.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 99999842100001123345566666766664 5689999999987
No 34
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=8.2e-08 Score=82.92 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=81.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc-----cceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFY-----FDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKS 145 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 145 (545)
-+++.|+|.+|+|||++++.++++ .... -..++|+.+....+...+...|+.+++.... ...+.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHH
Confidence 468899999999999999999983 3221 2356799988877999999999999998765 2456777778
Q ss_pred HHHHhcCCc-eEEEEEcCCCCCh---hhHHHHHhhCCCCCCCcEEEEecCC
Q 039831 146 ILRDYLTNK-KYFIVLDDVFHYS---EMWSDVVELLPDDQNGSRVLILVTE 192 (545)
Q Consensus 146 ~l~~~l~~k-~~LlVlDdv~~~~---~~~~~l~~~~~~~~~gs~iivTtR~ 192 (545)
.+.+.+... ..+||+|++.. . ..++.+..... ..+.++|++.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~-l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADH-LFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHH-HHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHh-cCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 888888754 46999999976 3 33455544443 567788887665
No 35
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.64 E-value=2.8e-07 Score=80.79 Aligned_cols=123 Identities=17% Similarity=0.072 Sum_probs=72.9
Q ss_pred eeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCC
Q 039831 51 SEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPS 130 (545)
Q Consensus 51 vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 130 (545)
.|++..++++...+.... .+.+.|+|.+|+|||++|+++++ .....-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 377888889988886643 46788999999999999999998 443222345666554433322211111000
Q ss_pred CccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCCh-----hhHHHHHhhCCCC---CCCcEEEEecCChh
Q 039831 131 RVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYS-----EMWSDVVELLPDD---QNGSRVLILVTEPT 194 (545)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~l~~~~~~~---~~gs~iivTtR~~~ 194 (545)
............++.++|+||++. . ..+..+...+... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDS-LSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhh-hhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 011111222345678999999985 2 2222323333221 35788999988654
No 36
>PF05729 NACHT: NACHT domain
Probab=98.63 E-value=7.8e-08 Score=86.59 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=66.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEecCCCCHH---HHHHHHHHHhCCCCCccccCCCCHHHHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFY----FDCLAWVRVSLLYDFG---KILEDIIKSVMPPSRVRVIIGKDYQFKK 144 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 144 (545)
|++.|+|.+|+||||+++.++.+-..... +...+|+......... .+...+..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 57899999999999999999874222222 3456666655433322 344444444432211 1111
Q ss_pred HHHHHhc-CCceEEEEEcCCCCCh---h-----hHHH-HHhhCCC-CCCCcEEEEecCChhH
Q 039831 145 SILRDYL-TNKKYFIVLDDVFHYS---E-----MWSD-VVELLPD-DQNGSRVLILVTEPTL 195 (545)
Q Consensus 145 ~~l~~~l-~~k~~LlVlDdv~~~~---~-----~~~~-l~~~~~~-~~~gs~iivTtR~~~v 195 (545)
.+...+ +.+++++|+|++++.. . .+.. +...++. ..+++++|||+|....
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 222222 4689999999998711 1 1222 2233332 3568999999998775
No 37
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.61 E-value=5.7e-08 Score=89.31 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=34.2
Q ss_pred ceeeecccHHHHHHHHHc-CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc
Q 039831 49 DISEFERGREKFFDLLIE-GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY 100 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 100 (545)
.|+||+++++++...+.. .....+.+.|+|.+|+|||+|.++++. ++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 489999999999999942 234578999999999999999999998 55544
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.8e-08 Score=94.76 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=53.1
Q ss_pred ccCcEEecCCCCCCcccHhhhcccccceeeecCccCC--CCcccCcCCccccccccccccCCCchhhc-CCCCCCCEEEE
Q 039831 396 LNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLP--APPKNYSSSLKNLIFTSALNPSSCTLDIL-FRLPSVRTLRI 472 (545)
Q Consensus 396 ~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp--~~~~~~~~~l~~L~~L~~~~~~~~~~~~l-~~l~~L~~L~l 472 (545)
+.|+++|+++|.++.+..++.-+|+++.|+++.|.+. .++ ..|.+|+.|++.++.-..+... .+|-|.++|.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL----a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL----AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhh----hhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3455555555555555544544555555555444221 223 3344444444333311111111 13344445555
Q ss_pred ecccCccccchhHhccCCCCCcEEEeecCCCC-Ceeecc-CCCCCCCccEEEEeccCCch
Q 039831 473 SGDLSYYQSGVSKSLCELHKLECLKLVNESKP-SRMVLS-EYQFPPSLIQLSLSNTELME 530 (545)
Q Consensus 473 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~L~lP-~l~~l~~L~~L~L~~~~l~~ 530 (545)
..|. .+.+ +.++++-+|..|++++ .. +.++-- .++++|+|+.|.|.+|++..
T Consensus 360 a~N~---iE~L-SGL~KLYSLvnLDl~~--N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNK---IETL-SGLRKLYSLVNLDLSS--NQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhh---Hhhh-hhhHhhhhheeccccc--cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 5443 2222 2344444555555543 11 111111 44556666666666665554
No 39
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.52 E-value=1.2e-07 Score=90.78 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC--CCHHHHHHHHHHHhCCCCCcc--ccCCCCHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL--YDFGKILEDIIKSVMPPSRVR--VIIGKDYQFKKSI 146 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~ 146 (545)
-..++|+|++|+|||||++.+|++.... +|+.++|+.+.+. +++.++++.+...+-....+. .....-.....+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999964444 8999999997766 789999999844332222200 0000001112222
Q ss_pred HHHh-cCCceEEEEEcCCCC
Q 039831 147 LRDY-LTNKKYFIVLDDVFH 165 (545)
Q Consensus 147 l~~~-l~~k~~LlVlDdv~~ 165 (545)
.... -.++++++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2221 247999999999865
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=3.1e-08 Score=93.22 Aligned_cols=125 Identities=15% Similarity=0.230 Sum_probs=69.2
Q ss_pred cCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeee
Q 039831 347 KRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNF 426 (545)
Q Consensus 347 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 426 (545)
...+.|+.|||++|.|+.+-+++.-++.++.|++++|.|..+.. +..|++|+.||+++|.+.++-..=.+|-|.+.|.+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34455667777777777666666666777777777777666643 66667777777777765555443344555666666
Q ss_pred cCccCC--CCcccCcCCccccccccccccCCC---chhhcCCCCCCCEEEEeccc
Q 039831 427 GSITLP--APPKNYSSSLKNLIFTSALNPSSC---TLDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 427 ~~~~lp--~~~~~~~~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~ 476 (545)
++|.+- .++ ++|-+|..|+...+.-. ....+|+|+.|+.|.+.+|.
T Consensus 360 a~N~iE~LSGL----~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLSGL----RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhhh----HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 655321 233 44444444443333111 22234455555555555443
No 41
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.45 E-value=4.6e-07 Score=86.45 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=42.4
Q ss_pred eeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC
Q 039831 50 ISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY 113 (545)
Q Consensus 50 ~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 113 (545)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+ ..+..-...+|+...+..
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEES 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBS
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccch
Confidence 7899999999999998753 56888999999999999999999 553322244555444443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.6e-07 Score=69.19 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=27.0
Q ss_pred cccEEEccCCCCCCCC-ccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCC
Q 039831 351 YLRVLNMGSAVLDQFP-PGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSS 406 (545)
Q Consensus 351 ~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~ 406 (545)
+|++|++++|.++.+| ..+..+++|++|++++|.++.+|+ .+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555555555443 234445555555555555544432 3445555555555544
No 43
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=3.5e-07 Score=78.68 Aligned_cols=102 Identities=13% Similarity=0.222 Sum_probs=68.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
.+++.|.|+.|+||||++++++++ .. .-..+++++..+........ .+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~~~~~~~--------------------~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFDDPRDRRLAD--------------------PD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccCCHHHHHHhh--------------------hh-hHHHHHHh
Confidence 368999999999999999999983 22 23456677654443211100 00 23344444
Q ss_pred cCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 151 LTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 151 l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
...++.++++|++.. ...|......+-+.....+|++|+.......
T Consensus 58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 444778899999999 7778777766665556789999998877654
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.41 E-value=6.6e-06 Score=80.57 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH--
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR-- 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~-- 148 (545)
.+++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..++..++.+.. ..+.......+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHH
Confidence 468899999999999999999984321 111 12233 23345677888899988866532 122233333333
Q ss_pred --Hhc-CCceEEEEEcCCCC-ChhhHHHHHh
Q 039831 149 --DYL-TNKKYFIVLDDVFH-YSEMWSDVVE 175 (545)
Q Consensus 149 --~~l-~~k~~LlVlDdv~~-~~~~~~~l~~ 175 (545)
... .+++.++|+||++. ....++.+..
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 322 57889999999998 2345666553
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.5e-07 Score=68.22 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=49.1
Q ss_pred CCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCcc
Q 039831 373 YLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~ 430 (545)
++|++|++++|+++.+|+ .+.++++|++|++++|.+..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468889999999988875 5688899999999988888887 678899999999988775
No 46
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.37 E-value=3.4e-07 Score=91.36 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=60.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC--CHHHHHHHHHHHhCCCCCccccCCCCHHHH-----H
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY--DFGKILEDIIKSVMPPSRVRVIIGKDYQFK-----K 144 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-----~ 144 (545)
+-.+|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++++...+-.... +.....+. .
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~----d~~~~~~~~~a~~~ 244 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF----DEPAERHVQVAEMV 244 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC----CCCHHHHHHHHHHH
Confidence 467899999999999999999954444 89999999998887 778888887643322211 11111111 1
Q ss_pred HHHHHh--cCCceEEEEEcCCCC
Q 039831 145 SILRDY--LTNKKYFIVLDDVFH 165 (545)
Q Consensus 145 ~~l~~~--l~~k~~LlVlDdv~~ 165 (545)
-...++ -.+++++|++|++-.
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHH
Confidence 122222 257999999999954
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=1.5e-06 Score=94.97 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=54.7
Q ss_pred ccEEEccCCCCC-CCCccccCCCCCCEEEccCCCCC-ccChhhhccccCcEEecCCCCCC-cccHhhhcccccceeeecC
Q 039831 352 LRVLNMGSAVLD-QFPPGLENLYLLKYLKLNIPSLK-CLPSLLCTLLNLETLEMPSSHID-QSPEDIWMMQKLMHLNFGS 428 (545)
Q Consensus 352 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~ 428 (545)
++.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++.+++|++|++++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777766 56667777777777777777764 56667777777777777777554 5667777777777777766
Q ss_pred c
Q 039831 429 I 429 (545)
Q Consensus 429 ~ 429 (545)
|
T Consensus 500 N 500 (623)
T PLN03150 500 N 500 (623)
T ss_pred C
Confidence 5
No 48
>PTZ00202 tuzin; Provisional
Probab=98.34 E-value=8.2e-06 Score=82.12 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=69.5
Q ss_pred ceeeecccHHHHHHHHHcCC-CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhC
Q 039831 49 DISEFERGREKFFDLLIEGP-SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVM 127 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 127 (545)
.|+||+++..++...|...+ ...+++.|.|++|+|||||++.+.. ... + ..+++... +..+++..++.+|+
T Consensus 263 ~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~--~l~--~-~qL~vNpr---g~eElLr~LL~ALG 334 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVR--KEG--M-PAVFVDVR---GTEDTLRSVVKALG 334 (550)
T ss_pred CCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHh--cCC--c-eEEEECCC---CHHHHHHHHHHHcC
Confidence 89999999999999997543 3456999999999999999999997 333 1 23333322 67999999999999
Q ss_pred CCCCccccCCCCHHHHHHHHHHhc-----C-CceEEEEEcC
Q 039831 128 PPSRVRVIIGKDYQFKKSILRDYL-----T-NKKYFIVLDD 162 (545)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDd 162 (545)
.+.. ....++.+.|.+.+ . +++.+||+-=
T Consensus 335 V~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l 369 (550)
T PTZ00202 335 VPNV------EACGDLLDFISEACRRAKKMNGETPLLVLKL 369 (550)
T ss_pred CCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7432 22233444443333 2 5666666543
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=8.2e-07 Score=97.03 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=73.9
Q ss_pred eeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCccccCCCCCCEEEccCCCCC-ccChhhhccccCcEE
Q 039831 324 LQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGLENLYLLKYLKLNIPSLK-CLPSLLCTLLNLETL 401 (545)
Q Consensus 324 lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L 401 (545)
++.|.+.++. +....+ ..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|+.+++|++|++|
T Consensus 420 v~~L~L~~n~---L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG---LRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC---ccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 5566665554 455555 67788888888888888877 67777888888888888888765 677778888888888
Q ss_pred ecCCCCCC-cccHhhhcc-cccceeeecCc
Q 039831 402 EMPSSHID-QSPEDIWMM-QKLMHLNFGSI 429 (545)
Q Consensus 402 ~l~~~~l~-~lp~~~~~L-~~L~~L~l~~~ 429 (545)
++++|.+. .+|..++.+ .++..+++.+|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCC
Confidence 88888544 677767654 35566666655
No 50
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.23 E-value=8.7e-06 Score=88.18 Aligned_cols=114 Identities=10% Similarity=-0.014 Sum_probs=79.0
Q ss_pred ceeeecccHHHHHHHHHcC---CCCcEEEEEEcCCCChHHHHHHHHhcCcc--c-ccccc--eeEEEEecCCCCHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYNNNY--V-KFYFD--CLAWVRVSLLYDFGKILE 120 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~-~~~F~--~~~wv~~~~~~~~~~~~~ 120 (545)
.+.||++++++|...|... .....++-|+|++|.|||+.++.|.+.-+ . +...+ .+++|....-.+...++.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 7889999999999998642 22346778999999999999999987311 0 11222 245666666677888899
Q ss_pred HHHHHhCCCCCccccCCCCHHHHHHHHHHhcC---CceEEEEEcCCCC
Q 039831 121 DIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT---NKKYFIVLDDVFH 165 (545)
Q Consensus 121 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~ 165 (545)
.|..++....+ .......+..+.+.+.+. +...+||||++..
T Consensus 836 vI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 836 VLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 99998865443 223344455566666552 2346899999976
No 51
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.20 E-value=1.1e-05 Score=93.16 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=82.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEec-CCCCHHHHHHHHHHHhC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVS-LLYDFGKILEDIIKSVM 127 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~ 127 (545)
.++-|+.-.+.+ .. ....+++.|+|++|.||||++....+ + ++.++|+++. .+.+...+...++..+.
T Consensus 15 ~~~~R~rl~~~l----~~-~~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 15 NTVVRERLLAKL----SG-ANNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccCcchHHHHHH----hc-ccCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 567776555544 32 23578999999999999999999876 2 2368899986 44566667677777774
Q ss_pred CCCCc---c------ccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC-ChhhH-HHHHhhCCCCCCCcEEEEecCCh
Q 039831 128 PPSRV---R------VIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFH-YSEMW-SDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 128 ~~~~~---~------~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~-~~~~~-~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
..... . .....+.......+...+. +.+++||+||+.. ..... +.+...+.....+.++|||||..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 22110 0 0111223334444444443 5799999999976 11222 23333333344567899999984
No 52
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.18 E-value=3.7e-06 Score=84.48 Aligned_cols=91 Identities=10% Similarity=-0.017 Sum_probs=61.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC--CCHHHHHHHHHHHhCCCCCccccCCCCH----HHHHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL--YDFGKILEDIIKSVMPPSRVRVIIGKDY----QFKKS 145 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~~~~ 145 (545)
..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-....+. ..... +...+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~--p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE--PASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC--ChHHHHHHHHHHHH
Confidence 468899999999999999999953333 6999999998866 789999999865543333211 01111 11111
Q ss_pred HHHHh-cCCceEEEEEcCCCC
Q 039831 146 ILRDY-LTNKKYFIVLDDVFH 165 (545)
Q Consensus 146 ~l~~~-l~~k~~LlVlDdv~~ 165 (545)
..... -.+++++|++|.+..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 11121 257999999999965
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.6e-07 Score=90.52 Aligned_cols=170 Identities=19% Similarity=0.137 Sum_probs=91.6
Q ss_pred CCCeeEEEEEccCCCCCC-----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc--ccC
Q 039831 299 PANFKRCIILGNQFDFFP-----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG--LEN 371 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~-----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~--i~~ 371 (545)
.+++|.+++..+...... ..|+ ++|.|++..+-...+..+. .....+++|+.|.++.|.+...-++ -..
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~--~v~~LdLS~NL~~nw~~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILP--NVRDLDLSRNLFHNWFPVL--KIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCC--cceeecchhhhHHhHHHHH--HHHHhcccchhcccccccccCCccccchhh
Confidence 456677777777665443 5566 7777777665532122222 4456677777777777776532221 235
Q ss_pred CCCCCEEEccCCCCCc--cChhhhccccCcEEecCCC-CCCcccHhhhcccccceeeecCccC---C--CCcccCcCCcc
Q 039831 372 LYLLKYLKLNIPSLKC--LPSLLCTLLNLETLEMPSS-HIDQSPEDIWMMQKLMHLNFGSITL---P--APPKNYSSSLK 443 (545)
Q Consensus 372 L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~l---p--~~~~~~~~~l~ 443 (545)
+.+|+.|.|+.|.++. +-.-...+++|+.|++..| .+..--.....+..|+.|++++|.+ + .-+ +.++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~----~~l~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV----GTLP 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc----cccc
Confidence 6677777777777652 2222345667777777777 2222223344455677777776632 2 122 5555
Q ss_pred ccccccccccCCC--------chhhcCCCCCCCEEEEeccc
Q 039831 444 NLIFTSALNPSSC--------TLDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 444 ~L~~L~~~~~~~~--------~~~~l~~l~~L~~L~l~~~~ 476 (545)
.|+.|+...+.-. .......+++|+.|.+..|.
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 5555554433111 11112345566666666655
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=5.5e-07 Score=89.23 Aligned_cols=203 Identities=16% Similarity=0.092 Sum_probs=119.9
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC---CccccCCCCCCEEEccCCCCCccChh--
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF---PPGLENLYLLKYLKLNIPSLKCLPSL-- 391 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~i~~lp~~-- 391 (545)
..++ +||.+.+.++.-. ..........+++++.|||++|-+..+ -.-..+|++|+.|+++.|.+...-++
T Consensus 118 sn~k--kL~~IsLdn~~V~---~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 118 SNLK--KLREISLDNYRVE---DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhHH--hhhheeecCcccc---ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 4455 7777777665532 111002456788888888888876633 23445788888888888876544332
Q ss_pred hhccccCcEEecCCCCCCc--ccHhhhcccccceeeecCcc-CC---CCcccCcCCcccccccccccc---CCCchhhcC
Q 039831 392 LCTLLNLETLEMPSSHIDQ--SPEDIWMMQKLMHLNFGSIT-LP---APPKNYSSSLKNLIFTSALNP---SSCTLDILF 462 (545)
Q Consensus 392 i~~L~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~-lp---~~~~~~~~~l~~L~~L~~~~~---~~~~~~~l~ 462 (545)
-..+.+|..|.+++|.+.. +-.....+|+|..|++..|. +- ... ..++.|++|++.++ +......++
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~----~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST----KILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh----hhhhHHhhccccCCcccccccccccc
Confidence 2356788888888886552 33445567888888887762 11 111 33556677766555 222334467
Q ss_pred CCCCCCEEEEecccCccccchh----HhccCCCCCcEEEeecCCCCCeeecc---CCCCCCCccEEEEeccCCchh
Q 039831 463 RLPSVRTLRISGDLSYYQSGVS----KSLCELHKLECLKLVNESKPSRMVLS---EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 463 ~l~~L~~L~l~~~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~~L~lP---~l~~l~~L~~L~L~~~~l~~~ 531 (545)
.|+.|+.|+++.+........+ .....+++|++|++..|+. ... | .+..+++|+.|.+..|++..+
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w--~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDW--RSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc-ccc--cccchhhccchhhhhhccccccccc
Confidence 7788888888877621111111 1245567888888875211 001 2 123366777777777776553
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.4e-06 Score=57.24 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCCEEEccCCCCCccChhhhccccCcEEecCCCCCCccc
Q 039831 374 LLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP 412 (545)
Q Consensus 374 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp 412 (545)
+|++|++++|+|+.+|+.+++|++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666666555566666666666666555444
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.11 E-value=1.2e-05 Score=81.47 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=37.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|++..++.+.+++..+. .+.+.++|+.|+||||+|+++++
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999887643 45678999999999999999988
No 57
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=1.4e-05 Score=78.28 Aligned_cols=112 Identities=17% Similarity=0.222 Sum_probs=81.9
Q ss_pred ceeeecccHHHHHHHHHcCCCC-cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhC
Q 039831 49 DISEFERGREKFFDLLIEGPSG-LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVM 127 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 127 (545)
+|.+|+.++..+..++...+.. +..|-|+|-+|.|||.+.+++++.. .. ..+|+++-..++.+-++..|+.+..
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHHhc
Confidence 7889999999999999877654 4455899999999999999999943 22 3589999999999999999999996
Q ss_pred CCCCccccCCCCHHHHHHHHHHhcC-------CceEEEEEcCCCC
Q 039831 128 PPSRVRVIIGKDYQFKKSILRDYLT-------NKKYFIVLDDVFH 165 (545)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~-------~k~~LlVlDdv~~ 165 (545)
..+.+......+.+...+.+..+-+ ++.++||||+++.
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 3332111112222333333332222 4689999999987
No 58
>PRK06893 DNA replication initiation factor; Validated
Probab=98.08 E-value=8.1e-06 Score=77.74 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV 109 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 109 (545)
.+.+.++|++|+|||+||+++++ ........+.|+++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeH
Confidence 46789999999999999999999 44333445667765
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=4.6e-07 Score=94.49 Aligned_cols=164 Identities=24% Similarity=0.302 Sum_probs=83.9
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
++..+.+.++. +..+. ..+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.|..++ .+..+.+|+.++
T Consensus 96 ~l~~l~l~~n~---i~~i~--~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 96 SLEALDLYDNK---IEKIE--NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ceeeeeccccc---hhhcc--cchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 55555555555 33332 12556666777777776666542 2445555666777776666553 344466667777
Q ss_pred cCCCCCCcccHh-hhcccccceeeecCccCC--CCcccCcCCccccccccccccCCCchhhcCCCCC--CCEEEEecccC
Q 039831 403 MPSSHIDQSPED-IWMMQKLMHLNFGSITLP--APPKNYSSSLKNLIFTSALNPSSCTLDILFRLPS--VRTLRISGDLS 477 (545)
Q Consensus 403 l~~~~l~~lp~~-~~~L~~L~~L~l~~~~lp--~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 477 (545)
+++|.+..+... ...+.+|+.+.+.++.+. .++ ..+..+..++...+.-..+..+..+.. |+.+++.++.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~- 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR- 243 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhcccch----HHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc-
Confidence 776666666543 456666666666665332 122 222222222211111112222222222 5666666665
Q ss_pred ccccchhHhccCCCCCcEEEeec
Q 039831 478 YYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 478 ~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
....+..+..+..+..|++..
T Consensus 244 --i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 244 --ISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred --cccccccccccccccccchhh
Confidence 232224455666666777654
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.2e-05 Score=79.60 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=88.2
Q ss_pred ceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccce--eEEEEecCCCCHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDC--LAWVRVSLLYDFGKILEDIIK 124 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~ 124 (545)
.+.+|+++++++...|..- +....-+.|+|..|.|||+.++.+.+ +++..... +++|.+-...+.-+++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 6889999999999998652 22233388999999999999999999 66555322 688888889999999999999
Q ss_pred HhCCCCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC
Q 039831 125 SVMPPSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFH 165 (545)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~ 165 (545)
+++.... ..+...+..+.+.+.+. ++.+++|||++..
T Consensus 96 ~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 96 KLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 9973322 45667777788888775 4799999999986
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=3.8e-06 Score=57.01 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=35.6
Q ss_pred CcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh
Q 039831 350 KYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS 390 (545)
Q Consensus 350 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~ 390 (545)
++|++|++++|.++.+|+.+++|++|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999999889999999999999999987753
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=6.1e-05 Score=75.46 Aligned_cols=124 Identities=13% Similarity=0.186 Sum_probs=79.4
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCc----ccccccceeEEEEe-cCCCCHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN----YVKFYFDCLAWVRV-SLLYDFGKILEDII 123 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~~~~~i~ 123 (545)
+++|-+..++++.+.+..+. -.....++|+.|+||||+|+.+++.- ....|.|...|... +....+.+ .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 68899888999999987653 34577899999999999999888721 12334454445432 22233333 22333
Q ss_pred HHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 124 KSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
..+.... ..+++-++|+|++.. ....++.+...+.....++.+|++|.+.+
T Consensus 83 ~~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 83 EEVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 3332211 123445566666654 26789999988887667899999987654
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.02 E-value=1.5e-05 Score=82.86 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=64.5
Q ss_pred ceeeecccHHH---HHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH
Q 039831 49 DISEFERGREK---FFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 49 ~~vGr~~~~~~---i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
+++|.+..+.+ +.+++..+ ....+.++|++|+||||+|+.+++ .....| +.++......+-++.++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAG--ATDAPF-----EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEecccccHHHHHHHH--
Confidence 79999888766 77777654 356788899999999999999998 443333 22222111111111111
Q ss_pred hCCCCCccccCCCCHHHHHHHHHHh-cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEE
Q 039831 126 VMPPSRVRVIIGKDYQFKKSILRDY-LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLI 188 (545)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iiv 188 (545)
+..... ..+++.+|++|+++. .....+.+...+.. |..+++
T Consensus 82 -------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 82 -------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred -------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 111111 135788999999987 23455666555432 444554
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.01 E-value=2.1e-06 Score=82.98 Aligned_cols=212 Identities=17% Similarity=0.095 Sum_probs=115.6
Q ss_pred CcCCCCceeEEEecCCCCCC-CCCCcchhhhcCCCcccEEEccCCC----CCCCCcc-------ccCCCCCCEEEccCCC
Q 039831 317 LEYSYMYLQSFLNHSSKSNH-LNPKDCEIFFKRFKYLRVLNMGSAV----LDQFPPG-------LENLYLLKYLKLNIPS 384 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~----l~~lp~~-------i~~L~~L~~L~l~~~~ 384 (545)
.... .+..+.+.++..+. -..... ..+.+.+.|+.-+++.-. .+++|+. +-..++|++|+||.|.
T Consensus 27 ~~~~--s~~~l~lsgnt~G~EAa~~i~-~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 27 EPMD--SLTKLDLSGNTFGTEAARAIA-KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cccC--ceEEEeccCCchhHHHHHHHH-HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4444 66777777666421 011222 456667777777777543 1244433 2344578888888887
Q ss_pred CCc-cC----hhhhccccCcEEecCCCCCCcccH--------------hhhcccccceeeecCccCCCC----cccCcCC
Q 039831 385 LKC-LP----SLLCTLLNLETLEMPSSHIDQSPE--------------DIWMMQKLMHLNFGSITLPAP----PKNYSSS 441 (545)
Q Consensus 385 i~~-lp----~~i~~L~~L~~L~l~~~~l~~lp~--------------~~~~L~~L~~L~l~~~~lp~~----~~~~~~~ 441 (545)
+.. .+ .-+.++..|++|.|.+|.++.... .+..-++|+++..+.|.+-.+ +++-+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 652 22 235567788888888886654331 123345677777766644221 1111134
Q ss_pred ccccccccccccCCC------chhhcCCCCCCCEEEEeccc--CccccchhHhccCCCCCcEEEeecCCCC----Ceeec
Q 039831 442 LKNLIFTSALNPSSC------TLDILFRLPSVRTLRISGDL--SYYQSGVSKSLCELHKLECLKLVNESKP----SRMVL 509 (545)
Q Consensus 442 l~~L~~L~~~~~~~~------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~L~~~~~~----~~L~l 509 (545)
.+.|+.+.+..++.. ....+..+++|+.|++.+|. ......+...+..+++|+.|++++ |. -...+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d--cll~~~Ga~a~ 261 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD--CLLENEGAIAF 261 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc--cccccccHHHH
Confidence 445555554444111 12335677777777777775 123344456666677777777763 32 00000
Q ss_pred c--CCCCCCCccEEEEeccCCchhhh
Q 039831 510 S--EYQFPPSLIQLSLSNTELMEDLI 533 (545)
Q Consensus 510 P--~l~~l~~L~~L~L~~~~l~~~~~ 533 (545)
- .-...|+|++|.+.+|.++.+..
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHH
Confidence 0 11236788888888888777543
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=6.7e-07 Score=84.43 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=92.7
Q ss_pred hhhcCCCcccEEEccCCCCC-CCCccccCCCCCCEEEccCCC-CCccC--hhhhccccCcEEecCCCCCCc-c-cHhhhc
Q 039831 344 IFFKRFKYLRVLNMGSAVLD-QFPPGLENLYLLKYLKLNIPS-LKCLP--SLLCTLLNLETLEMPSSHIDQ-S-PEDIWM 417 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~-i~~lp--~~i~~L~~L~~L~l~~~~l~~-l-p~~~~~ 417 (545)
..++.+.+|+.|.+.|+.+. .+-..|..-.+|+.|+|+.|. +++.- --+.++..|+.|++++|.+.. . ...+..
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 45566666666667666665 233445556666777776643 44321 124566666667776663221 1 111111
Q ss_pred -ccccceeeecCccCCCCcccCcCCccccccccccccCCCchhhc-CCCCCCCEEEEecccCccccchhHhccCCCCCcE
Q 039831 418 -MQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDIL-FRLPSVRTLRISGDLSYYQSGVSKSLCELHKLEC 495 (545)
Q Consensus 418 -L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 495 (545)
-++|..|+++|+.- .+ ....+..+ .+.++|.+|+++++. .........|.+++.|++
T Consensus 284 ise~l~~LNlsG~rr--nl------------------~~sh~~tL~~rcp~l~~LDLSD~v-~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRR--NL------------------QKSHLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hchhhhhhhhhhhHh--hh------------------hhhHHHHHHHhCCceeeecccccc-ccCchHHHHHHhcchhee
Confidence 13455555554410 00 01112222 467888889998876 233456667888889999
Q ss_pred EEeecCCCCCeeec-c----CCCCCCCccEEEEeccCCc
Q 039831 496 LKLVNESKPSRMVL-S----EYQFPPSLIQLSLSNTELM 529 (545)
Q Consensus 496 L~L~~~~~~~~L~l-P----~l~~l~~L~~L~L~~~~l~ 529 (545)
|+++ +...| | .+...|.|.+|++.+|--.
T Consensus 343 lSls-----RCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 343 LSLS-----RCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eehh-----hhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 9998 55555 4 3566888999999888654
No 66
>PRK04195 replication factor C large subunit; Provisional
Probab=97.95 E-value=3.5e-05 Score=81.83 Aligned_cols=117 Identities=14% Similarity=0.212 Sum_probs=71.5
Q ss_pred ceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|.++.++++.+|+..- +...+.+.|+|++|+||||+|+++++. +. |+ .+-+..+...+.. .+..++...
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~-~i~~~i~~~ 88 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTAD-VIERVAGEA 88 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHH-HHHHHHHHh
Confidence 8999999999999999642 223678999999999999999999993 32 22 2223333322222 233333322
Q ss_pred CCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCCh------hhHHHHHhhCCCCCCCcEEEEecCC
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYS------EMWSDVVELLPDDQNGSRVLILVTE 192 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~~l~~~~~~~~~gs~iivTtR~ 192 (545)
..... ....++-+||+|+++. . ..+..+...+.. .+..||+|+.+
T Consensus 89 ~~~~s------------------l~~~~~kvIiIDEaD~-L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 89 ATSGS------------------LFGARRKLILLDEVDG-IHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred hccCc------------------ccCCCCeEEEEecCcc-cccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 21111 0113678999999987 2 234555554442 24557777754
No 67
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.94 E-value=1.7e-05 Score=79.21 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=71.6
Q ss_pred ceeeecccHHHHHHHHHcC---CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
+|+|+++.++++..++... ....+.+.++|++|+|||+||+++++ .....+. .+......... .+...+..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~~---~~~~~~~~~~~-~l~~~l~~ 78 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNLK---ITSGPALEKPG-DLAAILTN 78 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCEE---EeccchhcCch-hHHHHHHh
Confidence 7999999999999988632 22355688999999999999999998 4433221 12111111111 22222333
Q ss_pred hCCCCC--ccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 126 VMPPSR--VRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 126 l~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
+....- -++.+..+ ....+.+...+.+.+..+|+|+..+ ...|. ...| +.+-|..||+...
T Consensus 79 ~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~-~~~~~---~~~~---~~~li~~t~~~~~ 141 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPS-ARSVR---LDLP---PFTLVGATTRAGM 141 (305)
T ss_pred cccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcc-cccee---ecCC---CeEEEEecCCccc
Confidence 332210 00111111 1234456666666667777777655 33332 1112 2455566666543
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=6.9e-05 Score=80.87 Aligned_cols=138 Identities=9% Similarity=0.061 Sum_probs=73.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.....++. ..+..... .+.|...-..
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~s----Cr~I~~G~h~ 88 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCRA----CREIDEGRFV 88 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccHH----HHHHhcCCCc
Confidence 89999999999999987653 2346679999999999999988773211111100 00000000 0000000000
Q ss_pred CCCc-cccCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 129 PSRV-RVIIGKDYQFKKSILRDY----LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.-.. ........+++.+.+... ..++.-++|+|++.. ....|..+...+.......++|+||++.+
T Consensus 89 DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 0000 000111223333222221 124556889999987 23567777776654444678888777744
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=97.89 E-value=6.6e-05 Score=75.35 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=68.4
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-ccccce-eEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYV-KFYFDC-LAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|.++.++.+.+++..+. .+-+.++|++|+||||+|+++++ .. ...|.. .+-+..++..... ..+.++..+
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH-HHHHHHHHH
Confidence 89999998888888876543 44577999999999999999988 33 222221 1111112221211 112222111
Q ss_pred CCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTE 192 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~ 192 (545)
..... ..-.++.-++|+|++.. .....+.+...+......+++|+++..
T Consensus 89 ~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 89 AQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred Hhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 11000 00024567899999987 233445555444433445777777754
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=4e-05 Score=77.55 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=84.6
Q ss_pred hcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCC-CCccChhhhccccCcEEecCCC-CCCcccHhhhcccccce
Q 039831 346 FKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPS-LKCLPSLLCTLLNLETLEMPSS-HIDQSPEDIWMMQKLMH 423 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~ 423 (545)
+..+++++.|++++|.++.+|. -..+|+.|.+++|. ++.+|..+. .+|+.|++++| .+..+|.+ |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 3447889999999999998882 23469999998854 778887663 58999999999 88888864 555
Q ss_pred eeecCccCCCCcccCcCCc-cccccccccccCCCchhhcC-CC-CCCCEEEEecccCccccchhHhccCCCCCcEEEeec
Q 039831 424 LNFGSITLPAPPKNYSSSL-KNLIFTSALNPSSCTLDILF-RL-PSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 424 L~l~~~~lp~~~~~~~~~l-~~L~~L~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
|++.++..+ .+ +.+ .+|+.|.+..........+. .| ++|+.|.+.+|. ...+|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~-~L----~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~---~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATD-SI----KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS---NIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCc-cc----ccCcchHhheeccccccccccccccccCCcccEEEecCCC---cccCccccc--ccCcEEEecc
Confidence 556543221 12 222 24555554221111111111 13 579999999887 222333332 5888999874
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.88 E-value=6.2e-05 Score=75.58 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=70.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++|.++..+.+..++..+. -..++.++|++|+||||+|+++++ ..... ...+..+. .... ..+..+..+..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~--~~~~~---~~~i~~~~-~~~~-~i~~~l~~~~~ 93 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN--EVGAE---VLFVNGSD-CRID-FVRNRLTRFAS 93 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCcc---ceEeccCc-ccHH-HHHHHHHHHHH
Confidence 89999999999999987643 356777899999999999999998 33222 22333332 1111 11111111100
Q ss_pred CCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCC-h-hhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 129 PSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHY-S-EMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~-~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.. .+.+.+-++|+|++... . +..+.+...+.....++++|+||....
T Consensus 94 ~~-------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 94 TV-------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred hh-------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 00 01134557899999761 1 223344443444445788999987543
No 72
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00013 Score=74.46 Aligned_cols=44 Identities=18% Similarity=0.006 Sum_probs=38.2
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 89999999999999887653 345678999999999999999987
No 73
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.85 E-value=8.6e-05 Score=64.19 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=48.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL 151 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 151 (545)
+.+.|+|++|+||||+|+.++. ........++++..+........... ....... ............+.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGK----KASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH--hhhhhcc----CCCCCHHHHHHHHHHHH
Confidence 5788999999999999999998 44433334555654443322222111 1111111 12223333344444444
Q ss_pred CCc-eEEEEEcCCCC
Q 039831 152 TNK-KYFIVLDDVFH 165 (545)
Q Consensus 152 ~~k-~~LlVlDdv~~ 165 (545)
+.. ..++++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 443 49999999987
No 74
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.84 E-value=2.8e-05 Score=73.96 Aligned_cols=57 Identities=9% Similarity=0.000 Sum_probs=38.7
Q ss_pred ceee--ecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 039831 49 DISE--FERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV 109 (545)
Q Consensus 49 ~~vG--r~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 109 (545)
+|++ .+..++++.+++... ..+.|.|+|.+|+|||++|+++++ +........+++++
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPL 74 (226)
T ss_pred CcCcCCcHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeH
Confidence 5552 344677777776432 356888999999999999999998 33333334556653
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.84 E-value=0.00014 Score=73.01 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=70.2
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc-ccceeEEEEec--CCCCHHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKF-YFDCLAWVRVS--LLYDFGKILEDIIKS 125 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~--~~~~~~~~~~~i~~~ 125 (545)
+++|+++.++.+..++.... .+.+.++|..|+||||+|+.+++ .... .+. ..++.+. ...... ...+.+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~-~~~i~~~~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAR--ELYGEDWR-ENFLELNASDERGID-VIRNKIKE 91 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHcCCccc-cceEEeccccccchH-HHHHHHHH
Confidence 89999999999999987643 44578999999999999999988 3321 121 1223321 111111 11111111
Q ss_pred hCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 039831 126 VMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTE 192 (545)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~ 192 (545)
+....+ .....+-++++|++.. .......+...+......+++|+++..
T Consensus 92 ~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 92 FARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred HHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 111100 0012356899999876 134455666665544455778877744
No 76
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.84 E-value=4.3e-05 Score=78.24 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=71.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
++++.++..+.+...|... +.+.++|++|+|||++|+++++.......|+.+.||.++..++..+++... ..
T Consensus 176 d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP 247 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RP 247 (459)
T ss_pred cccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CC
Confidence 7788899999999998753 467789999999999999999854334567788899999888876655322 11
Q ss_pred CCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC
Q 039831 129 PSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFH 165 (545)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~ 165 (545)
... +... ...-..+.+.+.-. ++++.+|+|++..
T Consensus 248 ~~v--gy~~-~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 248 NGV--GFRR-KDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCC--CeEe-cCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 110 0000 01112223333322 4689999999976
No 77
>PRK08116 hypothetical protein; Validated
Probab=97.83 E-value=0.00011 Score=71.55 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=59.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL 151 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 151 (545)
.-+.++|..|+|||.||.++++ .+...-..+++++ ..+++..+...+.... ..+..+ +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~----~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSG------KEDENE----IIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccc------cccHHH----HHHHh
Confidence 3578999999999999999999 5543333456664 3445555555443221 112222 33334
Q ss_pred CCceEEEEEcCCCC-ChhhHH--HHHhhCCC-CCCCcEEEEecCCh
Q 039831 152 TNKKYFIVLDDVFH-YSEMWS--DVVELLPD-DQNGSRVLILVTEP 193 (545)
Q Consensus 152 ~~k~~LlVlDdv~~-~~~~~~--~l~~~~~~-~~~gs~iivTtR~~ 193 (545)
.+-. |||+||+.. ...+|. .+...+.. -.+|..+|+||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4333 899999953 133443 23332221 23466799998753
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.83 E-value=8.7e-05 Score=80.75 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=86.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEecCC---CCHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF---DCLAWVRVSLL---YDFGKILEDI 122 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~---~~~~~~~~~i 122 (545)
+++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++..+....+ ...-|+.+... .+...+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred hceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 8999999999988887543 34579999999999999999998853332222 22346655421 1222221111
Q ss_pred ---------------HHHhCCCCC--------------ccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHH
Q 039831 123 ---------------IKSVMPPSR--------------VRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSD 172 (545)
Q Consensus 123 ---------------~~~l~~~~~--------------~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~ 172 (545)
+...+.... -++.+..+ ...+..+.+.++++++.++-|+.|. ....|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 111111000 00112222 3357788888999999999887765 2356888
Q ss_pred HHhhCCCCCCCcEEEE--ecCChh
Q 039831 173 VVELLPDDQNGSRVLI--LVTEPT 194 (545)
Q Consensus 173 l~~~~~~~~~gs~iiv--TtR~~~ 194 (545)
++..+....+..-|++ ||++..
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred hhhhcccCccceEEEEEecccccc
Confidence 8777766555555555 566543
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00013 Score=77.86 Aligned_cols=137 Identities=10% Similarity=0.088 Sum_probs=74.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++. +-. .-++... ..+.-..-+.+...-..
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~--LnC----~~~~~~~-pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC--LNC----ETGVTST-PCEVCATCKAVNEGRFI 87 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCC----CcCCCCC-CCccCHHHHHHhcCCCC
Confidence 89999999999999998653 3467789999999999999999872 211 0011000 00000000000000000
Q ss_pred CCCc-cccCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 129 PSRV-RVIIGKDYQFKKSILRDY----LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
.-.. ........+++.+.+.+. ..+++-++|+|+|.. ....+..+...+.....+.++|++|.+.
T Consensus 88 DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 88 DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 0000 000111233333222211 235667899999987 2456677777665544567788777653
No 80
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.82 E-value=5.6e-05 Score=77.41 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=40.0
Q ss_pred ceeeecccHHHHHHHHHcC--C---------CCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIEG--P---------SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++.|+++.+++|.+.+... . ...+-|.++|++|+|||++|+++++ +....|
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 7899999999999887431 0 1245588999999999999999999 554443
No 81
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.82 E-value=6.5e-05 Score=75.76 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=38.9
Q ss_pred ceeeecccHHHHHHHHHc---CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE---GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|+++.++.+..++.. .+...+.+.|+|++|+|||++|+++++
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH
Confidence 899999999999888864 233456788999999999999999999
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=4.8e-06 Score=86.82 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=44.8
Q ss_pred CeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 301 NFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
.+..+.+..+.+..+. ..+. +|+.|.+.++. +..+ ..+..++.|+.|++++|.++.+. .+..+..|+.
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~--~L~~L~ls~N~---I~~i---~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLV--NLQVLDLSFNK---ITKL---EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred ceeeeeccccchhhcccchhhhh--cchheeccccc---cccc---cchhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 3444444444444333 2233 45555554444 2222 22334444555555555544332 1223455555
Q ss_pred EEccCCCCCccChh-hhccccCcEEecCCCCCCc
Q 039831 378 LKLNIPSLKCLPSL-LCTLLNLETLEMPSSHIDQ 410 (545)
Q Consensus 378 L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~ 410 (545)
+++++|.+..+... ...+.+|+.+++.+|.+..
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 55555555444332 3444555555555554333
No 83
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.77 E-value=0.00026 Score=76.42 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=90.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC-CCCHHHHHHHHHHHhC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL-LYDFGKILEDIIKSVM 127 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~ 127 (545)
+.+-|. .+.+.|... .+.|++.|..++|.||||++.+.+. +... =..+.|.+++. +.+...+..-++..+.
T Consensus 20 ~~v~R~----rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 445554 455555544 2589999999999999999998875 2222 23588999875 4668888888888886
Q ss_pred CCCC---------ccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 128 PPSR---------VRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 128 ~~~~---------~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.-.+ .+.....+...+.+.+...+. .++..+||||--- +..--..+...+.....+-..|||||++-
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 4322 112234455566666666665 4689999999532 12222233333333445789999999965
Q ss_pred HH
Q 039831 195 LL 196 (545)
Q Consensus 195 v~ 196 (545)
-.
T Consensus 172 ~l 173 (894)
T COG2909 172 QL 173 (894)
T ss_pred CC
Confidence 43
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.76 E-value=7.8e-05 Score=81.99 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=37.4
Q ss_pred ceeeecccHH---HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGRE---KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~---~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
+|+|.+..+. .+.+.+..+ ....+.++|++|+||||+|+.+++ .....|
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 8999988774 455555543 356678999999999999999998 454444
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00022 Score=76.10 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=37.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 17 dVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997653 235678999999999999998877
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00023 Score=75.66 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=37.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999887643 345677999999999999999987
No 87
>PRK08727 hypothetical protein; Validated
Probab=97.74 E-value=7.7e-05 Score=71.22 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=36.2
Q ss_pred ceeeeccc-HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 039831 49 DISEFERG-REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV 109 (545)
Q Consensus 49 ~~vGr~~~-~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 109 (545)
+|++.... +..+....... ....+.|+|..|+|||+||+++++ ........+.|++.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~ 77 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPL 77 (233)
T ss_pred hccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeH
Confidence 67765543 33333333221 235699999999999999999988 44443345567753
No 88
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=4e-06 Score=81.09 Aligned_cols=224 Identities=15% Similarity=0.079 Sum_probs=147.8
Q ss_pred CCCeeEEEEEccCCCCCC--------CcCCCCceeEEEecCCCCCCCC-------CCcchhhhcCCCcccEEEccCCCCC
Q 039831 299 PANFKRCIILGNQFDFFP--------LEYSYMYLQSFLNHSSKSNHLN-------PKDCEIFFKRFKYLRVLNMGSAVLD 363 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~--------~~~~~~~lr~L~~~~~~~~~~~-------~~~~~~~~~~l~~L~~L~L~~~~l~ 363 (545)
...+..+.+++|.+.... ...+ +||...+.+..-+... ..+. ..+..++.|++|+||.|.+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~--~L~~v~~sd~ftGR~~~Ei~e~L~~l~-~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKK--ELREVNLSDMFTGRLKDEIPEALKMLS-KALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcc--cceeeehHhhhcCCcHHHHHHHHHHHH-HHHhcCCceeEeeccccccC
Confidence 346778888888765422 3444 6666665544332211 1122 55667789999999999876
Q ss_pred -CCC----ccccCCCCCCEEEccCCCCCccC--------------hhhhccccCcEEecCCCCCCccc-----Hhhhccc
Q 039831 364 -QFP----PGLENLYLLKYLKLNIPSLKCLP--------------SLLCTLLNLETLEMPSSHIDQSP-----EDIWMMQ 419 (545)
Q Consensus 364 -~lp----~~i~~L~~L~~L~l~~~~i~~lp--------------~~i~~L~~L~~L~l~~~~l~~lp-----~~~~~L~ 419 (545)
..+ .-+.+...|+.|.|.+|.+...- ..+++-++|+++....|.+..-| ..|...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 333 23556788999999999876321 22345568999999999776654 3566778
Q ss_pred ccceeeecCccC-CCCc---ccCcCCccccccccccccC------CCchhhcCCCCCCCEEEEeccc--CccccchhHhc
Q 039831 420 KLMHLNFGSITL-PAPP---KNYSSSLKNLIFTSALNPS------SCTLDILFRLPSVRTLRISGDL--SYYQSGVSKSL 487 (545)
Q Consensus 420 ~L~~L~l~~~~l-p~~~---~~~~~~l~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l 487 (545)
.|+.+.++.|.+ |+++ ..-+..+++|+.|++.++. ...-..+..+++|+.|++++|- ......+...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 899999987743 3332 0112678889988887772 1123346778899999999987 22334444444
Q ss_pred c-CCCCCcEEEeecCCCCCeeec------c-CCCCCCCccEEEEeccCCc
Q 039831 488 C-ELHKLECLKLVNESKPSRMVL------S-EYQFPPSLIQLSLSNTELM 529 (545)
Q Consensus 488 ~-~l~~L~~L~L~~~~~~~~L~l------P-~l~~l~~L~~L~L~~~~l~ 529 (545)
. ..+.|+.|.+.+ +.++. - .+...|.|+.|+|++|.+.
T Consensus 266 ~~~~p~L~vl~l~g----NeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAG----NEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCc----chhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4 358999999987 33333 2 3455899999999999994
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00019 Score=79.09 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=37.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 dIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987653 234567999999999999999998
No 90
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00026 Score=75.03 Aligned_cols=135 Identities=13% Similarity=0.041 Sum_probs=74.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++|-+..++.+.+++..+. -...+.++|++|+||||+|+.+++.....+.+...+|++.+... +......-+..+..
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~ 92 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDA 92 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecc
Confidence 89999999999988887653 33566899999999999999998842222223223343311100 00000000000000
Q ss_pred CCCccccCCCCHHHHHHHHHHh-----cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 039831 129 PSRVRVIIGKDYQFKKSILRDY-----LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTE 192 (545)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~ 192 (545)
. .....+++.+ +.+. +.+++-++|+|+++. ....++.+...+......+.+|++|..
T Consensus 93 ~------~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 93 A------SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred c------ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 0 1112222222 2222 234567899999986 245677787777654445566666544
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00024 Score=76.59 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=38.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+++
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 89999999999999998653 245678999999999999999877
No 92
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=2e-05 Score=86.23 Aligned_cols=57 Identities=33% Similarity=0.289 Sum_probs=29.4
Q ss_pred hcccccceeeecCccCC--CCcccCcCCcccccccccccc---CCCchhhcCCCCCCCEEEEeccc
Q 039831 416 WMMQKLMHLNFGSITLP--APPKNYSSSLKNLIFTSALNP---SSCTLDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 416 ~~L~~L~~L~l~~~~lp--~~~~~~~~~l~~L~~L~~~~~---~~~~~~~l~~l~~L~~L~l~~~~ 476 (545)
.++|+|..||++++.+. .++ ++|++||.|.+.+. +...+.++..|++|+.|+++...
T Consensus 170 ~sFpNL~sLDIS~TnI~nl~GI----S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNLSGI----SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCccceeecCCCCccCcHHH----hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 34444444444444222 244 45555555544443 22344556677777777777655
No 93
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.70 E-value=9.9e-05 Score=63.42 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
|.|+|++|+|||++|+.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 57899999999999999999
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00034 Score=74.28 Aligned_cols=44 Identities=9% Similarity=-0.051 Sum_probs=38.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++||-+..++.+.+++..+. -.....++|+.|+||||+|+.+++
T Consensus 17 divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997653 234678999999999999998887
No 95
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00041 Score=73.27 Aligned_cols=143 Identities=8% Similarity=0.002 Sum_probs=75.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEecCCCCHHHHHHHHHHHhC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDC-LAWVRVSLLYDFGKILEDIIKSVM 127 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~ 127 (545)
+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.--....... ..+..+..... -..+... .
T Consensus 22 dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~~~-~ 95 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFNNH-N 95 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHhcC-C
Confidence 89999999999888777653 3356789999999999999999873211111100 00000000000 0000000 0
Q ss_pred CCCC-c-cccCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEe-cCChhHHh
Q 039831 128 PPSR-V-RVIIGKDYQFKKSILRDY----LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLIL-VTEPTLLT 197 (545)
Q Consensus 128 ~~~~-~-~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivT-tR~~~v~~ 197 (545)
.... . ........+++.+.+... +.+++-++|+|+++. ....|+.+...+......+.+|++ |+...+..
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 0000 0 000112233333322221 235677899999987 346688888777654456666554 44444443
No 96
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=4.5e-05 Score=83.55 Aligned_cols=127 Identities=16% Similarity=0.199 Sum_probs=90.8
Q ss_pred CCeeEEEEEccCCCCCC------CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCC
Q 039831 300 ANFKRCIILGNQFDFFP------LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLY 373 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~------~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~ 373 (545)
.++++|.+.+...-.-. ..+| .|++|.+.+-... ..-+. ..+.++++|+.||+++++++.+ ..++.|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LP--sL~sL~i~~~~~~--~~dF~-~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLP--SLRSLVISGRQFD--NDDFS-QLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCc--ccceEEecCceec--chhHH-HHhhccCccceeecCCCCccCc-HHHhccc
Confidence 35667777664322111 4555 9999999876532 11122 5678999999999999999977 7889999
Q ss_pred CCCEEEccCCCCCccC--hhhhccccCcEEecCCCCCCcccHh-------hhcccccceeeecCccCC
Q 039831 374 LLKYLKLNIPSLKCLP--SLLCTLLNLETLEMPSSHIDQSPED-------IWMMQKLMHLNFGSITLP 432 (545)
Q Consensus 374 ~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp~~-------~~~L~~L~~L~l~~~~lp 432 (545)
+|+.|.+++-.+..-+ ..+.+|++|++||+|......-+.. -..||+||.||.+++.+-
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999999987776543 3578999999999998733333321 234899999999987554
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00052 Score=73.31 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+++..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999988653 234567999999999999999976
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00042 Score=72.77 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=36.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+...+.+...+..+. -...+.++|++|+||||+|+.+++
T Consensus 15 divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999888888888776553 335678999999999999999987
No 99
>PRK08118 topology modulation protein; Reviewed
Probab=97.58 E-value=3.3e-05 Score=69.59 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=27.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEE
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVK-FYFDCLAW 106 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 106 (545)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999954443 45677775
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.58 E-value=0.0011 Score=61.05 Aligned_cols=41 Identities=7% Similarity=0.271 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 153 NKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 153 ~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
+.+-++|+||+.. ....++.+...+......+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 5567899999976 2456777777776544567777777654
No 101
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00021 Score=74.09 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=37.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..+..+..++..+. -...+.++|+.|+||||+|+.+++
T Consensus 19 dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999988754 224578999999999999999988
No 102
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=1.5e-05 Score=67.04 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=57.8
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
.+....+.++. ++++++ .+-.+++.++.|+|++|.+..+|..+..++.|+.|++++|.+...|..|..|.+|-.|+
T Consensus 54 el~~i~ls~N~---fk~fp~-kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNG---FKKFPK-KFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccch---hhhCCH-HHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 44445555544 555555 55556666777777777777777777777777777777777777777666677777777
Q ss_pred cCCCCCCcccH
Q 039831 403 MPSSHIDQSPE 413 (545)
Q Consensus 403 l~~~~l~~lp~ 413 (545)
..+|...++|-
T Consensus 130 s~~na~~eid~ 140 (177)
T KOG4579|consen 130 SPENARAEIDV 140 (177)
T ss_pred CCCCccccCcH
Confidence 77776666663
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.57 E-value=0.00022 Score=69.55 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=69.0
Q ss_pred ceeeecccHHH---HHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH
Q 039831 49 DISEFERGREK---FFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 49 ~~vGr~~~~~~---i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
+.||.+..+-+ |.+++..+ ..+.+.+||++|+||||||+.+.+..+-.. ..||..|-...-..-.++|+++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 66776555433 33333332 577788999999999999999999543333 4577776554444444444443
Q ss_pred hCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEe
Q 039831 126 VMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLIL 189 (545)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivT 189 (545)
-... ..+.++|..|.+|.|-. +..+.+. .+|....|+-++|-
T Consensus 213 aq~~-------------------~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIG 255 (554)
T KOG2028|consen 213 AQNE-------------------KSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIG 255 (554)
T ss_pred HHHH-------------------HhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEe
Confidence 3221 22457889999999864 1233332 35555667766664
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.57 E-value=0.00079 Score=68.76 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=37.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++.+.+++..+. -...+.++|+.|+||||+|+.+++
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999887643 345778999999999999988876
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00058 Score=70.02 Aligned_cols=45 Identities=9% Similarity=-0.064 Sum_probs=37.3
Q ss_pred ceeeecccHHHHHHHHHcCCC--------CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPS--------GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~--------~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+.. -..-+.++|+.|+|||++|+.+++
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999976421 245688999999999999998876
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00065 Score=71.18 Aligned_cols=44 Identities=14% Similarity=0.010 Sum_probs=37.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 14 dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 89999998988888887653 234788999999999999998876
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.55 E-value=0.00033 Score=72.20 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=37.0
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.|+++.++++.+.+... -...+-|.++|++|+|||++|+++++
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 7789999999999877421 12345688999999999999999998
No 108
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0003 Score=69.82 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=64.6
Q ss_pred ceeeecccH---HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH
Q 039831 49 DISEFERGR---EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 49 ~~vGr~~~~---~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
++||.+.-+ .-|..++..+ .+.-.-.||++|+||||||+.+.. .....|. .++-..+-.+-++.++
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i~-- 93 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREII-- 93 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHHH--
Confidence 677765544 2244444433 466677999999999999999999 5555552 2222222222222221
Q ss_pred hCCCCCccccCCCCHHHHHHHH-HHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 126 VMPPSRVRVIIGKDYQFKKSIL-RDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
+.- .....+++.+|.+|.|-. +..+.+.+. |.-.+|.-|+|-+..+
T Consensus 94 -------------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTE 141 (436)
T COG2256 94 -------------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTE 141 (436)
T ss_pred -------------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCC
Confidence 111 222348899999999965 244555544 3344577677644333
No 109
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.00081 Score=63.90 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=40.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEE
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAW 106 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 106 (545)
.+.++.........++... .+|.+.|.+|.|||+||.++..+.-..+.|+.++.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 5778888888888888653 48999999999999999988774222344554443
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00075 Score=72.76 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+++
T Consensus 17 dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89998888888998887653 345678999999999999999865
No 111
>PRK08181 transposase; Validated
Probab=97.47 E-value=0.00025 Score=68.68 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL 151 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 151 (545)
.-+.++|.+|+|||.||.++.+ ........++|++ ..+++..+..... ....+.....+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~---------~~~~~~~l~~l---- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARR---------ELQLESAIAKL---- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHh---------CCcHHHHHHHH----
Confidence 4588999999999999999988 4433333455664 3444444433211 11222222222
Q ss_pred CCceEEEEEcCCCCC--hhhH-HHHHhhCCCCCCCcEEEEecCCh
Q 039831 152 TNKKYFIVLDDVFHY--SEMW-SDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 152 ~~k~~LlVlDdv~~~--~~~~-~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
.+.-|||+||+... ...+ ..+...+.....+..+||||...
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 23459999999651 1222 23333332211123588888653
No 112
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=3.4e-05 Score=64.91 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=41.8
Q ss_pred cCCCcccEEEccCCCCCCCCccccC-CCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceee
Q 039831 347 KRFKYLRVLNMGSAVLDQFPPGLEN-LYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLN 425 (545)
Q Consensus 347 ~~l~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 425 (545)
.+...|...+|++|.+..+|+.+.. .+.++.|++++|.|..+|..+..++.|+.|+++.|.+...|..+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 3334444455555555555544432 224555555555555555555555555555555555555554444455555555
Q ss_pred ecCc
Q 039831 426 FGSI 429 (545)
Q Consensus 426 l~~~ 429 (545)
..++
T Consensus 130 s~~n 133 (177)
T KOG4579|consen 130 SPEN 133 (177)
T ss_pred CCCC
Confidence 4433
No 113
>PRK12377 putative replication protein; Provisional
Probab=97.45 E-value=0.00047 Score=65.98 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=56.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
...+.++|.+|+|||+||.++++ ........++++++ .+++..+-...... ..... +.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~--------~~~~~----~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNG--------QSGEK----FLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhcc--------chHHH----HHHH
Confidence 45788999999999999999999 55444444566653 34444444433211 11122 2222
Q ss_pred cCCceEEEEEcCCCCC-hhhH--HHHHhhCCC-CCCCcEEEEecCC
Q 039831 151 LTNKKYFIVLDDVFHY-SEMW--SDVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 151 l~~k~~LlVlDdv~~~-~~~~--~~l~~~~~~-~~~gs~iivTtR~ 192 (545)
+ .+--|||+||+... ...| +.+...+.. -.+.--+||||..
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2 35568999999541 2334 233333332 1222336777754
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.45 E-value=0.00045 Score=77.17 Aligned_cols=116 Identities=9% Similarity=0.124 Sum_probs=68.3
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.++|.++.++.|.+.+... +....++.++|+.|+|||++|+++++ ... ...+.++.+.-.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhccc----
Confidence 6889999999999888642 22355788999999999999999998 442 2234454433222111
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC-ChhhHHHHHhhCCC
Q 039831 122 IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNK-KYFIVLDDVFH-YSEMWSDVVELLPD 179 (545)
Q Consensus 122 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~-~~~~~~~l~~~~~~ 179 (545)
+..-++.... .........+ .+.++.+ .-+++||+++. +.+.++.+...+..
T Consensus 526 ~~~lig~~~g--yvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 VSRLIGAPPG--YVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHHHhcCCCC--CcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222111 0111112223 3333333 45999999987 45667777666643
No 115
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.00088 Score=71.48 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=38.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+.+..+. ....+.++|+.|+||||+|+.+++
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999887653 345788999999999999999987
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0012 Score=68.36 Aligned_cols=44 Identities=20% Similarity=0.011 Sum_probs=37.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+++..+. -...+.++|+.|+||||+|..+++
T Consensus 17 eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 89999999999988887653 234577999999999999999887
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0012 Score=67.81 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=38.4
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+
T Consensus 18 ~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997643 345788999999999999999977
No 118
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.43 E-value=0.00051 Score=77.52 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=75.0
Q ss_pred ceeeecccHHHHHHHHHc-------CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIE-------GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.++|.++.++.|.+.+.. .+....++.++|+.|+|||.+|++++. .+-+.....+-+.++.-.+..
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~~~----- 639 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEFQEAH----- 639 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhhhh-----
Confidence 789999999999998853 123466889999999999999998877 332111111222222111111
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCC-----------CCcEEEEe
Q 039831 122 IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQ-----------NGSRVLIL 189 (545)
Q Consensus 122 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~-----------~gs~iivT 189 (545)
-...+.+..+ ..........+.+.+++ ....+|+||++.. +...++.+...+..+. ..+-||+|
T Consensus 640 ~~~~l~g~~~-gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TVSRLKGSPP-GYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhccccCCCC-CcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1112222111 01111111233334333 3457999999987 4566777776665432 34667777
Q ss_pred cCC
Q 039831 190 VTE 192 (545)
Q Consensus 190 tR~ 192 (545)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 119
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=1.3e-05 Score=84.41 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=77.4
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
.+++|++.++. +.++ ..+..++.|+.|||++|.+..+|.--..-.+|..|.+++|.++++ ..|.+|++|+.||
T Consensus 188 ale~LnLshNk---~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 188 ALESLNLSHNK---FTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred Hhhhhccchhh---hhhh---HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccc
Confidence 78888887777 3344 567888999999999999887775322223499999999988888 4688999999999
Q ss_pred cCCCCCCccc--HhhhcccccceeeecCcc
Q 039831 403 MPSSHIDQSP--EDIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 403 l~~~~l~~lp--~~~~~L~~L~~L~l~~~~ 430 (545)
++.|-+.... .-++.|..|+.|.+.||.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999554433 347788889999998763
No 120
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.42 E-value=0.00024 Score=67.11 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=29.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV 109 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 109 (545)
.++|+|..|+||||++..+.. ...+.|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 466899999999999999988 68888977777653
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=97.41 E-value=0.00033 Score=66.91 Aligned_cols=37 Identities=5% Similarity=0.072 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV 109 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 109 (545)
...+.|+|..|+|||.||+++++ .....-..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence 36788999999999999999988 43322234667753
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.40 E-value=0.0011 Score=64.32 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=78.0
Q ss_pred ceeeec---ccHHHHHHHHHcCC-CCcEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEecCCCCHHHHHH
Q 039831 49 DISEFE---RGREKFFDLLIEGP-SGLSVVAILDSSGFDKTAFAADTYNNNYVKF----YFDCLAWVRVSLLYDFGKILE 120 (545)
Q Consensus 49 ~~vGr~---~~~~~i~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~ 120 (545)
..+|.. +.++++.+++.... .+++-+.|||.+|+|||++++.++...-... .--.++.|..-..++...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 355543 33555666665543 4567899999999999999999986421110 011466777778899999999
Q ss_pred HHHHHhCCCCCccccCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 039831 121 DIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTN-KKYFIVLDDVFH 165 (545)
Q Consensus 121 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 165 (545)
.|+.+++.+-. ...........+...++. +--+||+|.+.+
T Consensus 115 ~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 115 AILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99999998865 334455555555566654 455889999965
No 123
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.40 E-value=0.0002 Score=66.31 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=36.2
Q ss_pred ceeeecccHHHHHHHHHc---CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE---GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
+|+|.+.-++++.-++.. .++...-+.+||++|+||||||..+++ .....|
T Consensus 25 efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 899999999887666542 234577889999999999999999999 565555
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=97.40 E-value=0.0016 Score=63.98 Aligned_cols=127 Identities=12% Similarity=0.140 Sum_probs=66.3
Q ss_pred ceeeecccHHHHHHHHH---cC----------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCH
Q 039831 49 DISEFERGREKFFDLLI---EG----------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDF 115 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~---~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 115 (545)
+++|.++.+++|.++.. -. ......+.++|.+|+||||+|+.+++.......-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 58898887776655531 11 11223477899999999999999977211111111122444441
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCC----------hhhHHHHHhhCCCCCCCcE
Q 039831 116 GKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHY----------SEMWSDVVELLPDDQNGSR 185 (545)
Q Consensus 116 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~l~~~~~~~~~gs~ 185 (545)
. ++...+.+. ........+.+. . .-+|++|++... .+..+.+...+.....+.+
T Consensus 100 ~----~l~~~~~g~---------~~~~~~~~l~~a-~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 100 D----DLVGQYIGH---------TAPKTKEVLKKA-M--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred H----HHHHHHhcc---------chHHHHHHHHHc-c--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 1 222222221 112222333332 2 248899998530 1233445555544445667
Q ss_pred EEEecCChhH
Q 039831 186 VLILVTEPTL 195 (545)
Q Consensus 186 iivTtR~~~v 195 (545)
||.++....+
T Consensus 164 vI~ag~~~~~ 173 (287)
T CHL00181 164 VIFAGYKDRM 173 (287)
T ss_pred EEEeCCcHHH
Confidence 7777765444
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.39 E-value=0.00039 Score=66.15 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=30.4
Q ss_pred cee-eecccH-HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DIS-EFERGR-EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~v-Gr~~~~-~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+|+ |..+.. ..+.++.. .....+.+.|+|..|+|||+||+++++.
T Consensus 19 ~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 19 NFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 666 444433 34444433 2223567889999999999999999983
No 126
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=3.2e-06 Score=88.71 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=58.5
Q ss_pred hhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCcccHhhhcccccc
Q 039831 344 IFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSPEDIWMMQKLM 422 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~ 422 (545)
.++.-++.|+.|+|++|.++..- .+..+++|++|||++|.+..+|. +...+. |+.|.+++|.++++-. +.+|.+|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-ie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-IENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-HHhhhhhh
Confidence 55666777778888888777543 66777778888888877777764 223343 7778888777776653 77777788
Q ss_pred eeeecCc
Q 039831 423 HLNFGSI 429 (545)
Q Consensus 423 ~L~l~~~ 429 (545)
.|+++.|
T Consensus 258 ~LDlsyN 264 (1096)
T KOG1859|consen 258 GLDLSYN 264 (1096)
T ss_pred ccchhHh
Confidence 8877766
No 127
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.0007 Score=68.73 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=52.5
Q ss_pred CeeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCC-CCCCCCccccCCCCCCEEE
Q 039831 301 NFKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSA-VLDQFPPGLENLYLLKYLK 379 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~ 379 (545)
..++|.+..+.+..++.-.+ +|++|.+.++.. +..++ ..+ .++|+.|++++| .+..+|.. |+.|+
T Consensus 53 ~l~~L~Is~c~L~sLP~LP~--sLtsL~Lsnc~n--LtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIESLPVLPN--ELTEITIENCNN--LTTLP--GSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred CCCEEEeCCCCCcccCCCCC--CCcEEEccCCCC--cccCC--chh--hhhhhheEccCcccccccccc------cceEE
Confidence 56788888887666664334 788888877654 33333 222 257889999988 57777754 55566
Q ss_pred ccCCC---CCccChhhhcc
Q 039831 380 LNIPS---LKCLPSLLCTL 395 (545)
Q Consensus 380 l~~~~---i~~lp~~i~~L 395 (545)
+.++. +..+|+++..|
T Consensus 119 L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred eCCCCCcccccCcchHhhe
Confidence 66544 56677765443
No 128
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.36 E-value=0.0013 Score=64.78 Aligned_cols=125 Identities=11% Similarity=0.097 Sum_probs=65.3
Q ss_pred ceeeecccHHHHHHHHHc---C------C----CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCH
Q 039831 49 DISEFERGREKFFDLLIE---G------P----SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDF 115 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~------~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 115 (545)
+++|.++.+++|.++... . . ....-+.++|.+|.|||++|+++++............|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 488888887776654321 1 0 1122477999999999999988776211111111123454442
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCC----------hhhHHHHHhhCCCCCCCcE
Q 039831 116 GKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHY----------SEMWSDVVELLPDDQNGSR 185 (545)
Q Consensus 116 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~l~~~~~~~~~gs~ 185 (545)
. +++..+.+. ........+.+. ..-+|++|++... .+.++.+...+.....+.+
T Consensus 99 ~----~l~~~~~g~---------~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 D----DLVGQYIGH---------TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred H----HHhHhhccc---------chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 1 222222221 112222333332 2358899998630 2234555555555445667
Q ss_pred EEEecCCh
Q 039831 186 VLILVTEP 193 (545)
Q Consensus 186 iivTtR~~ 193 (545)
||.++...
T Consensus 163 vI~a~~~~ 170 (284)
T TIGR02880 163 VILAGYKD 170 (284)
T ss_pred EEEeCCcH
Confidence 77776544
No 129
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.36 E-value=0.00078 Score=64.32 Aligned_cols=116 Identities=11% Similarity=0.113 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccC
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVII 136 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 136 (545)
+..+.++..........+.++|.+|+|||+||.++++ .....-..+++++ ..+++..+-......
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it------~~~l~~~l~~~~~~~------- 149 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT------VADIMSAMKDTFSNS------- 149 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE------HHHHHHHHHHHHhhc-------
Confidence 3444444433222345788999999999999999999 4433333455553 344554444433211
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHH--HHhhCCC-CCCCcEEEEecCC
Q 039831 137 GKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSD--VVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 137 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~--l~~~~~~-~~~gs~iivTtR~ 192 (545)
..+.+. +.+.+. +.=+||+||+.. ...+|+. +...+.. -...-.+||||..
T Consensus 150 ~~~~~~----~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 150 ETSEEQ----LLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cccHHH----HHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 112222 233344 344888899976 1345542 3333321 1223447777754
No 130
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.36 E-value=0.00049 Score=65.78 Aligned_cols=57 Identities=5% Similarity=-0.009 Sum_probs=35.2
Q ss_pred cee-eec-ccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe
Q 039831 49 DIS-EFE-RGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV 109 (545)
Q Consensus 49 ~~v-Gr~-~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 109 (545)
+|+ |-. ..+..+.++.... ..+.+.|+|+.|+|||+||+++++ .....-..+.++++
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~ 81 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPL 81 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEH
Confidence 555 522 2344444443322 345788999999999999999998 43332234556654
No 131
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.34 E-value=0.00086 Score=75.90 Aligned_cols=132 Identities=13% Similarity=0.193 Sum_probs=74.0
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.++|.+..++.|...+... +....++.++|+.|+|||++|+++++ ..-..-...+.+.++.-.. . .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~-~----~ 641 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFME-K----H 641 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhh-h----h
Confidence 6889999999999888632 22346788999999999999999987 3322112233444332211 1 1
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHhcCCc-eEEEEEcCCCC-ChhhHHHHHhhCCCC----C-------CCcEEEE
Q 039831 122 IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNK-KYFIVLDDVFH-YSEMWSDVVELLPDD----Q-------NGSRVLI 188 (545)
Q Consensus 122 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~-~~~~~~~l~~~~~~~----~-------~gs~iiv 188 (545)
....+.+..+ +....+.. ..+.+.++.+ .-+|+||++.. +...+..+...+..+ + ..+-||+
T Consensus 642 ~~~~LiG~~p--gy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 642 SVSRLVGAPP--GYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred hHHHHhCCCC--cccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 1222222211 11111111 1233333323 35999999986 356777776665432 1 1233788
Q ss_pred ecCC
Q 039831 189 LVTE 192 (545)
Q Consensus 189 TtR~ 192 (545)
||..
T Consensus 717 TSN~ 720 (857)
T PRK10865 717 TSNL 720 (857)
T ss_pred eCCc
Confidence 8865
No 132
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.0011 Score=71.67 Aligned_cols=44 Identities=16% Similarity=0.034 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+. -...+.++|..|+||||+|+.+++
T Consensus 17 divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999887653 234567999999999999999987
No 133
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.33 E-value=0.00042 Score=63.94 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=63.8
Q ss_pred eeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE--e--cCCCC--HHH-------
Q 039831 51 SEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR--V--SLLYD--FGK------- 117 (545)
Q Consensus 51 vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--~--~~~~~--~~~------- 117 (545)
..+..+-....+.|.. ..+|.+.|++|.|||.||.+.+-+.-..+.|+..+++. + ++... .-.
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 4455666677777773 45899999999999999988876544457788887774 1 11110 000
Q ss_pred HHHHHHHHhCCCCCccccCCCCHHHHHHHH------HHhcCCc---eEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEE
Q 039831 118 ILEDIIKSVMPPSRVRVIIGKDYQFKKSIL------RDYLTNK---KYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVL 187 (545)
Q Consensus 118 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~ii 187 (545)
.+..+...+..-- .....+.+.+.- -.+++|+ ...||+|++++ ..+++..+ +.+.+.|||||
T Consensus 79 ~~~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii 150 (205)
T PF02562_consen 79 YLRPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKII 150 (205)
T ss_dssp TTHHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEE
T ss_pred HHHHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEE
Confidence 1111222221110 111122222110 2344554 57999999988 23455554 44456799999
Q ss_pred EecCChhHH
Q 039831 188 ILVTEPTLL 196 (545)
Q Consensus 188 vTtR~~~v~ 196 (545)
++=-..++.
T Consensus 151 ~~GD~~Q~D 159 (205)
T PF02562_consen 151 ITGDPSQID 159 (205)
T ss_dssp EEE------
T ss_pred EecCceeec
Confidence 986555443
No 134
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0005 Score=74.87 Aligned_cols=130 Identities=16% Similarity=0.280 Sum_probs=80.9
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEecCCCCHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDC-LAWVRVSLLYDFGKILE 120 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~ 120 (545)
.++|-++.++.|.+.+... +.+.++...+|+.|||||.||++++. .+ |+. ...+. +|+.+.+.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~L---fg~e~aliR----~DMSEy~E 562 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--AL---FGDEQALIR----IDMSEYME 562 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--Hh---cCCCcccee----echHHHHH
Confidence 7899999999999998542 34577888899999999999999887 22 321 22222 23333222
Q ss_pred H-HHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceE-EEEEcCCCC-ChhhHHHHHhhCCCC----CC-------CcEE
Q 039831 121 D-IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKY-FIVLDDVFH-YSEMWSDVVELLPDD----QN-------GSRV 186 (545)
Q Consensus 121 ~-i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~-~~~~~~~l~~~~~~~----~~-------gs~i 186 (545)
. -++.|-+..+ +.-.. ++ -..|-+.+++++| .|.||.|.. +.+..+-+.+.+.++ +. .+-|
T Consensus 563 kHsVSrLIGaPP--GYVGy--ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 563 KHSVSRLIGAPP--GYVGY--EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred HHHHHHHhCCCC--CCcee--cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 1 2233333322 12221 11 3455666777877 888999987 567777777777654 22 3556
Q ss_pred EEecCC
Q 039831 187 LILVTE 192 (545)
Q Consensus 187 ivTtR~ 192 (545)
|+||.-
T Consensus 638 ImTSN~ 643 (786)
T COG0542 638 IMTSNA 643 (786)
T ss_pred EEeccc
Confidence 777643
No 135
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0023 Score=68.79 Aligned_cols=44 Identities=18% Similarity=0.029 Sum_probs=37.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++
T Consensus 14 eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997653 334578999999999999999987
No 136
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0022 Score=65.20 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-++.++.+.+.+..+. -...+.++|+.|+||+|+|..+++
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999888753 234688999999999999977766
No 137
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.31 E-value=0.0015 Score=58.21 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=29.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCC
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYD 114 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 114 (545)
++.|+|.+|+||||+|..+.. .....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 367999999999999999988 3433334577887665543
No 138
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.00041 Score=66.87 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+-+.++|++|+|||+||.++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 34588999999999999999987
No 139
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.30 E-value=0.00048 Score=64.99 Aligned_cols=114 Identities=11% Similarity=0.202 Sum_probs=64.3
Q ss_pred HHHHHHHHcC-CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEecCCCCHHHHHHHHHHHhCCCCCccc
Q 039831 58 EKFFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFD--CLAWVRVSLLYDFGKILEDIIKSVMPPSRVRV 134 (545)
Q Consensus 58 ~~i~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 134 (545)
-...+.+... +.....+-|+|..|+|||.|.+++++ ++..... .+++++ ..++...+...+...
T Consensus 20 ~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~----- 86 (219)
T PF00308_consen 20 YAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADALRDG----- 86 (219)
T ss_dssp HHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHHHHcc-----
Confidence 3344444443 33455678999999999999999999 5544332 345553 445555555555332
Q ss_pred cCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHH-HHhhCCC-CCCCcEEEEecCCh
Q 039831 135 IIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSD-VVELLPD-DQNGSRVLILVTEP 193 (545)
Q Consensus 135 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~-l~~~~~~-~~~gs~iivTtR~~ 193 (545)
.. ..+++.++ .-=+|++||++. ....|.. +...+.. ...|-+||+|++..
T Consensus 87 ----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 87 ----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp ----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred ----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 11 23334444 334788999976 1233332 2222221 23477899999653
No 140
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.29 E-value=0.00085 Score=65.29 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=33.0
Q ss_pred ceeeecccHHHHHHHHHc---------C----CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE---------G----PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---------~----~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..+++|.+.... . .....-+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 578888887776544311 1 12345678999999999999999987
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.29 E-value=0.0019 Score=73.33 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=76.2
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.++|.+..++.+...+... +....++.++|+.|+|||++|++++. .....-...+.+.++.-.....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~---- 639 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHS---- 639 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccch----
Confidence 6899999999999998642 12356788999999999999999998 3322222333444443222111
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCC-----------CCCcEEEEe
Q 039831 122 IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDD-----------QNGSRVLIL 189 (545)
Q Consensus 122 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~-----------~~gs~iivT 189 (545)
...+.+..+ ..........+...+++ ....+|+||++.. +.+.+..+...+..+ -+.+-||+|
T Consensus 640 -~~~l~g~~~-g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 -VARLIGAPP-GYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred -HHHhcCCCC-CccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 112222111 00111112233333332 2234899999987 456777777766432 123447888
Q ss_pred cCC
Q 039831 190 VTE 192 (545)
Q Consensus 190 tR~ 192 (545)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 765
No 142
>PRK09087 hypothetical protein; Validated
Probab=97.29 E-value=0.001 Score=63.04 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
..+.+.|||..|+|||+|++++++.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999973
No 143
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.27 E-value=0.00069 Score=67.96 Aligned_cols=107 Identities=14% Similarity=0.011 Sum_probs=66.7
Q ss_pred cHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc-ce-eEEEEecC-CCCHHHHHHHHHHHhCCCCCc
Q 039831 56 GREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DC-LAWVRVSL-LYDFGKILEDIIKSVMPPSRV 132 (545)
Q Consensus 56 ~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~ 132 (545)
...++++.+..-..+ +-+.|+|.+|+|||||++.+++ .+.... +. ++|+.+.+ ..++.++.+.+...+.....+
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 344577776643323 4568999999999999999988 444333 33 46767764 567888999888877654321
Q ss_pred c-ccCCCCHHHHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 133 R-VIIGKDYQFKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 133 ~-~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
. .............+.+++ ++++++||+|++-.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 001111122222333333 47899999999853
No 144
>PRK09183 transposase/IS protein; Provisional
Probab=97.27 E-value=0.00067 Score=65.71 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+.|+|++|+|||+||.++++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999977
No 145
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=9.1e-06 Score=76.94 Aligned_cols=77 Identities=12% Similarity=-0.010 Sum_probs=34.8
Q ss_pred eeEEEEEccCCCCCC-----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCC-CCCCC--ccccCCC
Q 039831 302 FKRCIILGNQFDFFP-----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAV-LDQFP--PGLENLY 373 (545)
Q Consensus 302 ~r~l~~~~~~~~~~~-----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp--~~i~~L~ 373 (545)
++++.+....++... ..|. +|+.|.+.+..- ..-.- ..+.+-.+|+.|+++.|. +++.. --+.+++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~--kLk~lSlEg~~L---dD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCS--KLKNLSLEGLRL---DDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHH--hhhhcccccccc---CcHHH-HHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 444544444443322 3444 555555544442 11111 234444556666665554 44221 1234555
Q ss_pred CCCEEEccCCC
Q 039831 374 LLKYLKLNIPS 384 (545)
Q Consensus 374 ~L~~L~l~~~~ 384 (545)
.|..|+|++|.
T Consensus 261 ~L~~LNlsWc~ 271 (419)
T KOG2120|consen 261 RLDELNLSWCF 271 (419)
T ss_pred hHhhcCchHhh
Confidence 55556665554
No 146
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.0014 Score=66.31 Aligned_cols=135 Identities=12% Similarity=0.105 Sum_probs=85.5
Q ss_pred ceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecCCCCHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSLLYDFGKILEDIIK 124 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~ 124 (545)
.++||+.+++.+.+++... .+..+.+-|.|-+|.|||.+...++.+ ..... ..++++....-....+++..|..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 7899999999999999653 345678889999999999999999984 33222 23455554444567788888888
Q ss_pred HhCCCCCccccCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC-ChhhHHHHHhhCCC-CCCCcEEEEe
Q 039831 125 SVMPPSRVRVIIGKDYQFKKSILRDYLTN--KKYFIVLDDVFH-YSEMWSDVVELLPD-DQNGSRVLIL 189 (545)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~-~~~~~~~l~~~~~~-~~~gs~iivT 189 (545)
.+..... ......+.+..+.+...+ ..+++|+|..+. ....-..+...|.+ .-+++|+|+.
T Consensus 229 ~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 229 SLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred HHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeee
Confidence 7733222 111124555566555544 378999999765 11222223333332 2346666644
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.22 E-value=0.0019 Score=66.46 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=36.9
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.|.+..+++|.+.+... -...+-|.++|++|.|||++|+++++
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 8899999999988876421 02356788999999999999999999
No 148
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.00073 Score=61.15 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 039831 73 VVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 149
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.22 E-value=0.00099 Score=63.28 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=56.3
Q ss_pred HHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH----hCCCCCcccc
Q 039831 60 FFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS----VMPPSRVRVI 135 (545)
Q Consensus 60 i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~ 135 (545)
+-+.|..+=..-.++.|+|.+|+|||++|.+++. .....-..++||+.. .++...+. ++... +...-. -.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~--~~ 85 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNII--IF 85 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeE--EE
Confidence 4444433223457999999999999999988877 333334568899877 55554433 23222 100000 01
Q ss_pred CCCCHHH---HHHHHHHhcCCceEEEEEcCCC
Q 039831 136 IGKDYQF---KKSILRDYLTNKKYFIVLDDVF 164 (545)
Q Consensus 136 ~~~~~~~---~~~~l~~~l~~k~~LlVlDdv~ 164 (545)
...+.++ ..+.+.+.++.+.-++|+|.+.
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 86 EPSSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred eCCCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 1122222 3344444444667799999984
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.20 E-value=0.00065 Score=76.85 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=36.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+++++++...|.... ..-+.++|.+|+|||++|+.++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998654 22345999999999999999988
No 151
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.19 E-value=0.00094 Score=64.39 Aligned_cols=93 Identities=10% Similarity=0.171 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEecCC-CCHHHHHHHHHHHhCCCCC---ccccCCCCH-----
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDC-LAWVRVSLL-YDFGKILEDIIKSVMPPSR---VRVIIGKDY----- 140 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~----- 140 (545)
-+-++|.|.+|+||||||+.+++ .++.+|+. ++++-+++. ..+.++.+.+...=..... ....+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35689999999999999999999 67666644 555566654 4456666666543111111 000111111
Q ss_pred HHHHHHHHHhc---CCceEEEEEcCCCC
Q 039831 141 QFKKSILRDYL---TNKKYFIVLDDVFH 165 (545)
Q Consensus 141 ~~~~~~l~~~l---~~k~~LlVlDdv~~ 165 (545)
....-.+.+++ +++.+|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12234456666 38899999999854
No 152
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0027 Score=70.97 Aligned_cols=44 Identities=18% Similarity=0.021 Sum_probs=37.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+++
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999988653 234678999999999999999977
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.19 E-value=0.0027 Score=72.00 Aligned_cols=133 Identities=11% Similarity=0.123 Sum_probs=75.5
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.++|-++.++.|.+.+... +....++.++|+.|+|||+||+++++ .+-..-...+-+..+.-.+...+.
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~-- 585 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVS-- 585 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHH--
Confidence 7899999999998888531 22345677999999999999999987 332111223333433322211111
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHhcCCce-EEEEEcCCCC-ChhhHHHHHhhCCCC-----------CCCcEEEE
Q 039831 122 IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKK-YFIVLDDVFH-YSEMWSDVVELLPDD-----------QNGSRVLI 188 (545)
Q Consensus 122 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~-~~~~~~~l~~~~~~~-----------~~gs~iiv 188 (545)
.-++.+.. ........ .+.+.++.++ .+++||++.. +.+.++.+...+..+ .+.+-||+
T Consensus 586 --~l~g~~~g--yvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 --KLIGSPPG--YVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred --HhcCCCCc--ccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 11121110 11111122 2344444454 5899999987 456677777666542 13456777
Q ss_pred ecCCh
Q 039831 189 LVTEP 193 (545)
Q Consensus 189 TtR~~ 193 (545)
||...
T Consensus 658 Tsn~g 662 (821)
T CHL00095 658 TSNLG 662 (821)
T ss_pred eCCcc
Confidence 77653
No 154
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0035 Score=68.14 Aligned_cols=136 Identities=10% Similarity=0.038 Sum_probs=72.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++|-+..++.+.+++..+. -...+.++|..|+||||+|+.+++ .+.... +-.-....+.-...+.+......
T Consensus 17 eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~----~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK--AVNCTT----NDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH--HhcCCC----CCCCCCCCccCHHHHHHhcCCCC
Confidence 89999999999988887653 235667999999999999999987 221100 00000011111122222221111
Q ss_pred CCCc-cccCCCCHHHHHHHHHHh-----cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 039831 129 PSRV-RVIIGKDYQFKKSILRDY-----LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTE 192 (545)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~ 192 (545)
.-.. ........+++.+ +.+. ..+++-++|+|++.. ..+..+.+...+......+.+|++|.+
T Consensus 90 d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 90 DVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred eEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0000 0001122333322 2222 124567899999976 245567777666544445666666644
No 155
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0045 Score=65.41 Aligned_cols=44 Identities=11% Similarity=-0.078 Sum_probs=37.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+. -.....++|+.|+||||+|+.++.
T Consensus 17 diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997753 345667899999999999998877
No 156
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.0032 Score=68.08 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=38.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 25 dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997653 344678999999999999999987
No 157
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.004 Score=62.99 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=38.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-++..+.+...+..+. -...+.|+|+.|+||||+|..+++
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 79999999999999997653 344688999999999999998877
No 158
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.004 Score=67.49 Aligned_cols=44 Identities=18% Similarity=-0.038 Sum_probs=36.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999887643 234578999999999999988877
No 159
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.15 E-value=0.00032 Score=69.97 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=40.2
Q ss_pred ceeeecccHHHHHHHHHcC----CCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEG----PSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|.++.++++++++... +...++++++|++|+||||||+++++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999653 234689999999999999999999883
No 160
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.00096 Score=61.98 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=65.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL 151 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 151 (545)
++|.|+|+.|+||||++.++.. .+.......+++- .++... .... ...+..+.. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E~--~~~~-~~~~i~q~~----vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIEF--VHES-KRSLINQRE----VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCccc--cccC-ccceeeecc----cCCCccCHHHHHHHHh
Confidence 5789999999999999998877 4443334444432 222110 0000 000000000 0112234456777888
Q ss_pred CCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 152 TNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 152 ~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
...+=.+++|.+.+ .+.+..+.... ..|..++.|+...+++.
T Consensus 72 r~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 72 RQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 77788999999988 66655544432 24666888888777655
No 161
>PRK06921 hypothetical protein; Provisional
Probab=97.14 E-value=0.0016 Score=63.31 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=28.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc-cceeEEEEe
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFY-FDCLAWVRV 109 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 109 (545)
...+.++|..|+|||+||.++++ .+... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 46788999999999999999999 55433 344566653
No 162
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.14 E-value=0.00015 Score=72.41 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=80.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeE-EEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLA-WVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
..+.|.++|.|||||||++-.+.. +...|.... ++....--+...+.-.+...++.... +.+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 468999999999999999998887 666786544 55555555555555555555655432 2244455677
Q ss_pred HhcCCceEEEEEcCCCCCh-hhHHHHHhhCCCCCCCcEEEEecCChhHHhc
Q 039831 149 DYLTNKKYFIVLDDVFHYS-EMWSDVVELLPDDQNGSRVLILVTEPTLLTS 198 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~~~-~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~ 198 (545)
.+..++|.++|+||..+ . ..-..+...+..+...-+|+.|+|.......
T Consensus 83 ~~~~~rr~llvldnceh-l~~~~a~~i~all~~~~~~~~~atsre~~l~~g 132 (414)
T COG3903 83 RRIGDRRALLVLDNCEH-LLDACAALIVALLGACPRLAILATSREAILVAG 132 (414)
T ss_pred HHHhhhhHHHHhcCcHH-HHHHHHHHHHHHHccchhhhhHHHhHhhhcccc
Confidence 77888999999999866 3 2223444455555666778888888655443
No 163
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0039 Score=62.67 Aligned_cols=122 Identities=8% Similarity=0.124 Sum_probs=73.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc---------------------cceeEEE
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY---------------------FDCLAWV 107 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------F~~~~wv 107 (545)
+++|-+....++..+..........+.++|+.|+||||+|.++++. +-.. ++....+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 3567778888888888754433445889999999999999888873 2211 1233333
Q ss_pred EecCCCC---HHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCC
Q 039831 108 RVSLLYD---FGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNG 183 (545)
Q Consensus 108 ~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~g 183 (545)
.-+.... ..+..+.+......... .++.-++|+|+++. ..+....+...+-.....
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 3333322 23333333333322210 25678899999987 234445555555445557
Q ss_pred cEEEEecCC
Q 039831 184 SRVLILVTE 192 (545)
Q Consensus 184 s~iivTtR~ 192 (545)
+++|++|.+
T Consensus 140 ~~~il~~n~ 148 (325)
T COG0470 140 TRFILITND 148 (325)
T ss_pred eEEEEEcCC
Confidence 788888874
No 164
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.13 E-value=0.0018 Score=67.32 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFD--CLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
...+.|+|..|+|||+||+++++ .+..... .+++++ ..++...+...+... ..+...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~---------~~~~~~---- 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNN---------KMEEFK---- 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC---------CHHHHH----
Confidence 45688999999999999999999 5544332 345554 333444454444321 122222
Q ss_pred HhcCCceEEEEEcCCCCC--hhhH-HHHHhhCCC-CCCCcEEEEecCC
Q 039831 149 DYLTNKKYFIVLDDVFHY--SEMW-SDVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~~--~~~~-~~l~~~~~~-~~~gs~iivTtR~ 192 (545)
+.+++ .-+||+||+... ...+ +.+...+.. ...|..+|+||..
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 22322 348899999750 1111 223322221 1235568887764
No 165
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.13 E-value=0.0045 Score=55.41 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=68.5
Q ss_pred eecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCc---ccc---------------cccceeEEEEecCC-
Q 039831 52 EFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN---YVK---------------FYFDCLAWVRVSLL- 112 (545)
Q Consensus 52 Gr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~---------------~~F~~~~wv~~~~~- 112 (545)
|-++..+.+.+.+..+. -...+.++|..|+||+++|.++++.- ... ..+....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 34555666777666543 34467899999999999998776621 111 12333444432221
Q ss_pred --CCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEe
Q 039831 113 --YDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLIL 189 (545)
Q Consensus 113 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivT 189 (545)
..++++- .+...+..... .+++=.+|+||++. ..+.+..+...+-....++++|++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2222221 33333222211 23566899999987 356777777776555568899999
Q ss_pred cCChh
Q 039831 190 VTEPT 194 (545)
Q Consensus 190 tR~~~ 194 (545)
|++.+
T Consensus 139 t~~~~ 143 (162)
T PF13177_consen 139 TNNPS 143 (162)
T ss_dssp ES-GG
T ss_pred ECChH
Confidence 98765
No 166
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.13 E-value=0.004 Score=59.15 Aligned_cols=93 Identities=10% Similarity=0.080 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccc------ceeEEEEecCCCCHHHHHHHHHHHhCCCCC-----ccccCCC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYF------DCLAWVRVSLLYDFGKILEDIIKSVMPPSR-----VRVIIGK 138 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~ 138 (545)
.-.++.|+|.+|+|||++|.+++.. ....- ..++|++....++...+. .+......... -.-....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4579999999999999999888762 22222 457899887777765543 33333322110 0011223
Q ss_pred CHHHHHHHHHHhcC----CceEEEEEcCCCC
Q 039831 139 DYQFKKSILRDYLT----NKKYFIVLDDVFH 165 (545)
Q Consensus 139 ~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 165 (545)
+.++....+.+..+ .+.-++|+|.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 45666655555443 3556999999854
No 167
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.10 E-value=0.0016 Score=65.13 Aligned_cols=35 Identities=9% Similarity=-0.030 Sum_probs=26.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR 108 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 108 (545)
.-+.++|..|+|||+||.++++ .+-..-..+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEE
Confidence 6688999999999999999999 4433323456665
No 168
>PHA00729 NTP-binding motif containing protein
Probab=97.10 E-value=0.0012 Score=61.62 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 59 KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 59 ~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.+.+... +..-|.|.|.+|+||||||.++.+
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 344444443 355788999999999999999988
No 169
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0057 Score=64.90 Aligned_cols=44 Identities=14% Similarity=-0.099 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+...+..+. -..+..++|+.|+||||+|+.+++
T Consensus 15 eiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 89999999999999987653 345668999999999999998776
No 170
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0037 Score=67.18 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 89998888888888887542 2467788999999999999999873
No 171
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.09 E-value=0.0042 Score=56.58 Aligned_cols=121 Identities=9% Similarity=-0.031 Sum_probs=63.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhC--CCCC--cc-------ccCCCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVM--PPSR--VR-------VIIGKD 139 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~--~~-------~~~~~~ 139 (545)
-.+++|.|..|+|||||++.++.-. ....+.+++.-. +.......+-..++ .+.. .. ...-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 3589999999999999999998732 122333433210 11111111111111 0000 00 001122
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 140 YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 140 ~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
.+...-.+.+.+..++-++++|+... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 24444566777778889999999875 22223333333322123677888888876543
No 172
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.08 E-value=0.003 Score=57.65 Aligned_cols=123 Identities=12% Similarity=0.073 Sum_probs=70.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---ecCCCCHHHHH------HHHHHHhCCCCC--ccccCCCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR---VSLLYDFGKIL------EDIIKSVMPPSR--VRVIIGKD 139 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~------~~i~~~l~~~~~--~~~~~~~~ 139 (545)
-.+++|+|..|+|||||.+.++.. .....+.+++. +. ..+..... -+++..++.... .....-..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 468999999999999999999973 22344555442 21 11221111 113444443321 00112233
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCC-CC-CcEEEEecCChhHHh
Q 039831 140 YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDD-QN-GSRVLILVTEPTLLT 197 (545)
Q Consensus 140 ~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~-~~-gs~iivTtR~~~v~~ 197 (545)
.+...-.+.+.+...+-++++|+.-. +....+.+...+... .. |..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34445567777888889999999865 223334444433321 22 677899988876543
No 173
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.0036 Score=65.70 Aligned_cols=44 Identities=14% Similarity=-0.040 Sum_probs=37.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++
T Consensus 18 diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999997653 235678999999999999988876
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0016 Score=73.71 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+.++++++..|.... ..-+.++|.+|+|||++|+.++.
T Consensus 179 ~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998754 23455899999999999999988
No 175
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.06 E-value=0.0012 Score=73.93 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=36.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+++++++...|.... ..-+.++|.+|+|||++|+.+++
T Consensus 183 ~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 79999999999999887654 22356899999999999999988
No 176
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.06 E-value=0.00037 Score=63.39 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=24.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR 108 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 108 (545)
..-+.++|..|+|||.||.++.+ +...+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee
Confidence 35688999999999999999988 3322212355664
No 177
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.05 E-value=0.00041 Score=58.71 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
||+|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 178
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0015 Score=62.94 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=44.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
..=+.++|.+|+|||.||.++.+ ++..+=-.+.+++ ..+++.++........ ....+.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~------~~el~~~Lk~~~~~~~------------~~~~l~~~ 164 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFIT------APDLLSKLKAAFDEGR------------LEEKLLRE 164 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcCc------------hHHHHHHH
Confidence 45578999999999999999999 5543222344553 4455555555443311 12222222
Q ss_pred cCCceEEEEEcCCCC
Q 039831 151 LTNKKYFIVLDDVFH 165 (545)
Q Consensus 151 l~~k~~LlVlDdv~~ 165 (545)
+ .+-=|||+||+..
T Consensus 165 l-~~~dlLIiDDlG~ 178 (254)
T COG1484 165 L-KKVDLLIIDDIGY 178 (254)
T ss_pred h-hcCCEEEEecccC
Confidence 2 2234899999976
No 179
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.04 E-value=0.0019 Score=67.54 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc-c-eeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF-D-CLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
..-+.|+|.+|+|||+||+++++ .+...+ . .++|++. .++...+...+... ..++ .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~----f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHH----HH
Confidence 44588999999999999999999 554433 2 3556643 34555555555322 1222 22
Q ss_pred HhcCCceEEEEEcCCCCC--hhhH-HHHHhhCCC-CCCCcEEEEecC
Q 039831 149 DYLTNKKYFIVLDDVFHY--SEMW-SDVVELLPD-DQNGSRVLILVT 191 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~~--~~~~-~~l~~~~~~-~~~gs~iivTtR 191 (545)
+.+..+.-+|++||+... ...+ +.+...+.. ...|..||+||.
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 333334568999999751 1111 222222211 123457888874
No 180
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.04 E-value=0.0015 Score=61.16 Aligned_cols=92 Identities=11% Similarity=0.041 Sum_probs=53.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCC--CCccccCCCCH---HHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPP--SRVRVIIGKDY---QFKK 144 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~---~~~~ 144 (545)
.-+++.|+|.+|+|||++|.+++. .....-..++||+... +....+.+ ++...... ..-.-....+. .+..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 457999999999999999988876 3333346789999875 66555443 33322000 00000111222 2334
Q ss_pred HHHHHhcCC-ceEEEEEcCCCC
Q 039831 145 SILRDYLTN-KKYFIVLDDVFH 165 (545)
Q Consensus 145 ~~l~~~l~~-k~~LlVlDdv~~ 165 (545)
..+.+.+.. +.-+||+|-+..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHH
Confidence 555555543 466899999843
No 181
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00026 Score=67.28 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=57.3
Q ss_pred cCCCcccEEEccCCCCCCC---CccccCCCCCCEEEccCCCCCccChhh-hccccCcEEecCCCC--CCcccHhhhcccc
Q 039831 347 KRFKYLRVLNMGSAVLDQF---PPGLENLYLLKYLKLNIPSLKCLPSLL-CTLLNLETLEMPSSH--IDQSPEDIWMMQK 420 (545)
Q Consensus 347 ~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~--l~~lp~~~~~L~~ 420 (545)
.....++.|||.+|.++.. ..-+.+|++|++|+|+.|.+..--.+. ..+.+|++|-+.++. .....+.+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4567788889999888733 344568888999999888754322222 245688888888873 3455566777888
Q ss_pred cceeeecCc
Q 039831 421 LMHLNFGSI 429 (545)
Q Consensus 421 L~~L~l~~~ 429 (545)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 888877754
No 182
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.0053 Score=66.49 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987653 235668999999999999998877
No 183
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0032 Score=59.91 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=76.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC-----CCCHHHHHHHHHHHhCCCCC--ccccCCCCHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL-----LYDFGKILEDIIKSVMPPSR--VRVIIGKDYQFK 143 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~ 143 (545)
-.++|+||..|+||||+|+.+.. +-..-.+.+++.-.+ .....+-..+++..++.... .+.....+..|.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999997 333334455543211 22234456677777765432 111112222333
Q ss_pred -HHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHhc
Q 039831 144 -KSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLTS 198 (545)
Q Consensus 144 -~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~~ 198 (545)
.-.|.+.|.-++-++|.|..-+ +.+.-.++...+.+ ...|-..+..|.+-.++..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 3456788889999999999755 12222333332221 2346778899999888885
No 184
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.0013 Score=62.42 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=35.0
Q ss_pred eecccHHHHHHHHHc-CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 52 EFERGREKFFDLLIE-GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 52 Gr~~~~~~i~~~L~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|++.+++|.+.+.. ......+|+|.|.+|+||||+|+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 366778888888865 334678999999999999999999998
No 185
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.02 E-value=0.0021 Score=63.67 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=64.6
Q ss_pred ecccHHHHHHHHHcCC--CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCC
Q 039831 53 FERGREKFFDLLIEGP--SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPS 130 (545)
Q Consensus 53 r~~~~~~i~~~L~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 130 (545)
+....+...+++..-. ...+-+.++|..|+|||.||.++++ .....=..+.++++ ..++..+...+...
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~------~~l~~~lk~~~~~~- 206 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF------PEFIRELKNSISDG- 206 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH------HHHHHHHHHHHhcC-
Confidence 3333444445554211 1345688999999999999999999 44332223456643 34555555444221
Q ss_pred CccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHH--HHhhC-CCC-CCCcEEEEecCC
Q 039831 131 RVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSD--VVELL-PDD-QNGSRVLILVTE 192 (545)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~--l~~~~-~~~-~~gs~iivTtR~ 192 (545)
+..+ .+. .+ .+-=||||||+.. ....|.. +...+ ... ..+-.+|+||..
T Consensus 207 --------~~~~---~l~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 --------SVKE---KID-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------cHHH---HHH-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1222 222 22 2456899999975 1355643 43333 221 235568888854
No 186
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.01 E-value=0.003 Score=65.15 Aligned_cols=97 Identities=20% Similarity=0.166 Sum_probs=62.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcC
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT 152 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 152 (545)
++.|+|+-++||||+++.+.. ..... .+++...+...-..-+. +....+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~~l~---------------------d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRIELL---------------------DLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchhhHH---------------------HHHHHHHHhhc
Confidence 999999999999999977766 33222 45554332211111111 11112222222
Q ss_pred CceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 153 NKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 153 ~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
.++..++||.|.. ...|+.....+.+.++. +|++|+-+.....
T Consensus 93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 2778999999999 99999888888765555 8999987766544
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.0016 Score=70.45 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=39.2
Q ss_pred ceeeecccHHHHHHHHHcCC---CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGP---SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~---~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++++..++.... ...+++.|+|++|+||||+++.++.
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997532 2346799999999999999999998
No 188
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.00 E-value=0.0052 Score=53.86 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
-.+++|+|..|.|||||++.+..-. ....+.+|+.-.. .+.-- .+-...+...-.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-----~~lS~G~~~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-----EQLSGGEKMRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-----ccCCHHHHHHHHHHHH
Confidence 4689999999999999999998832 2234444442100 00000 0011223444556777
Q ss_pred cCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 151 LTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 151 l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+..++-++++|+.-. +....+.+...+... +..||++|.+...+.
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 777888999999865 233334444333322 246888888866554
No 189
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.00 E-value=0.002 Score=71.49 Aligned_cols=115 Identities=10% Similarity=0.161 Sum_probs=67.0
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.++|-++.++.|.+.+... +.....+.++|+.|+|||++|++++. ..... .+.+.++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~~---~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGIE---LLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCCC---cEEeechhhcccc----c
Confidence 6899999999999988631 23456789999999999999999988 44322 2334433221111 1
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC-ChhhHHHHHhhCC
Q 039831 122 IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTN-KKYFIVLDDVFH-YSEMWSDVVELLP 178 (545)
Q Consensus 122 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~-~~~~~~~l~~~~~ 178 (545)
...+.+... +....+. ...+.+.++. ...+|+||++.. +.+.++.+...+.
T Consensus 530 -~~~LiG~~~--gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 -VSRLIGAPP--GYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -HHHHcCCCC--Ccccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 122222211 1111111 1123333333 346999999987 3466777766554
No 190
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.00 E-value=0.0012 Score=69.41 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=36.8
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.|.+..+++|.+.+... -...+-+.++|++|.|||++|+++++
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 8889999999998886421 12345588999999999999999999
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.00099 Score=57.99 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=30.2
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHH
Q 039831 74 VAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILE 120 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 120 (545)
|.++|.+|+|||+||+.+++ .... ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEecccccccccee
Confidence 67899999999999999998 4421 233456777777776653
No 192
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.0022 Score=58.30 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=30.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR 108 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 108 (545)
...+|.++|+.|+||||+|+.+++ +....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 356899999999999999999998 6666666666663
No 193
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.95 E-value=0.004 Score=59.54 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-----cccCCCCH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFY----FDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-----RVIIGKDY 140 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~ 140 (545)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++...+. +++...+..... .-....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 4579999999999999999988753222221 3578899988877765443 333433321110 00111222
Q ss_pred HH---HHHHHHHhcC-C-ceEEEEEcCCCC
Q 039831 141 QF---KKSILRDYLT-N-KKYFIVLDDVFH 165 (545)
Q Consensus 141 ~~---~~~~l~~~l~-~-k~~LlVlDdv~~ 165 (545)
++ ....+.+.+. . +.-+||+|-+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 33 3344444443 3 677999999853
No 194
>CHL00176 ftsH cell division protein; Validated
Probab=96.94 E-value=0.0032 Score=68.55 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=55.7
Q ss_pred ceeeecccHHHHHHHH---HcCC-------CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHH
Q 039831 49 DISEFERGREKFFDLL---IEGP-------SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKI 118 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 118 (545)
++.|.++.++++.+.+ .... ...+-|.++|++|.|||++|+++++ ..... |+.++.. ++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~--e~~~p-----~i~is~s----~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG--EAEVP-----FFSISGS----EF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC-----eeeccHH----HH
Confidence 7899888777766654 2211 1234588999999999999999998 33222 3333211 11
Q ss_pred HHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 119 LEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 119 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
. .... ......+...+.+.....+++|++|++..
T Consensus 253 ~----~~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 253 V----EMFV---------GVGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred H----HHhh---------hhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 1 0000 01122334445555567789999999953
No 195
>PRK04296 thymidine kinase; Provisional
Probab=96.93 E-value=0.0019 Score=59.49 Aligned_cols=114 Identities=11% Similarity=-0.025 Sum_probs=64.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL 151 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 151 (545)
.++.|+|..|.||||+|...+. +...+-..++.+. ..++.+.....++.+++.... .......++....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~--~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE--AIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCccc--ceEeCChHHHHHHHHh-h
Confidence 4677899999999999988877 4433333334442 222222223345555543221 0112334555555555 3
Q ss_pred CCceEEEEEcCCCCC-hhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 152 TNKKYFIVLDDVFHY-SEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 152 ~~k~~LlVlDdv~~~-~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.++.-+||+|.+.-. .++...+...+ ...|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 345568999999751 23233333332 234788999998855
No 196
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.93 E-value=0.0057 Score=55.46 Aligned_cols=117 Identities=13% Similarity=0.160 Sum_probs=65.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc-cc--ccc---cc--eeEEEEecCCCCHHHHHHHHHHHhCCCCC--ccccCCCC-
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNN-YV--KFY---FD--CLAWVRVSLLYDFGKILEDIIKSVMPPSR--VRVIIGKD- 139 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~-~~--~~~---F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~- 139 (545)
-.+++|+|+.|+|||||.+.+..+. ++ ... |. ...|+ .+ .+.+..++.... .......+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999986421 11 111 10 12232 11 345556654321 11112222
Q ss_pred HHHHHHHHHHhcCCc--eEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 140 YQFKKSILRDYLTNK--KYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 140 ~~~~~~~l~~~l~~k--~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
.+...-.+...+..+ +-++++|..-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 233445566666677 78899999755 13333334333332 124677999998877554
No 197
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0084 Score=65.25 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997653 345678999999999999988776
No 198
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.92 E-value=0.0023 Score=67.54 Aligned_cols=101 Identities=13% Similarity=0.225 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFD--CLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSIL 147 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 147 (545)
...-+.|+|..|+|||+||+++++ ++...+. .+++++. .++...+...+... ..+ .+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~----~~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN---------TME----EF 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC---------cHH----HH
Confidence 345688999999999999999999 5555442 2445542 23333444444221 122 22
Q ss_pred HHhcCCceEEEEEcCCCCC--hh-hHHHHHhhCCC-CCCCcEEEEecCC
Q 039831 148 RDYLTNKKYFIVLDDVFHY--SE-MWSDVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 148 ~~~l~~k~~LlVlDdv~~~--~~-~~~~l~~~~~~-~~~gs~iivTtR~ 192 (545)
.+.++ +.-+||+||+... .. ..+.+...+.. ...|..||+||..
T Consensus 206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 33333 3448999999650 11 12233322221 1235568888765
No 199
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.008 Score=65.71 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=37.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 89999999999999997653 345677999999999999999877
No 200
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0011 Score=59.81 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=40.9
Q ss_pred hhcCCCcccEEEccCCCCCCCCcccc-CCCCCCEEEccCCCCCccC--hhhhccccCcEEecCCCCCCcccH----hhhc
Q 039831 345 FFKRFKYLRVLNMGSAVLDQFPPGLE-NLYLLKYLKLNIPSLKCLP--SLLCTLLNLETLEMPSSHIDQSPE----DIWM 417 (545)
Q Consensus 345 ~~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~~~~ 417 (545)
.|.+++.|..|.|++|.|+.+-+.+. -+++|..|.|.+|+|.++- ..+..++.|++|.+-+|.+++.+. -+..
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 34555555555555555554433333 2334555555555544431 123445555555555554444332 2445
Q ss_pred ccccceeeec
Q 039831 418 MQKLMHLNFG 427 (545)
Q Consensus 418 L~~L~~L~l~ 427 (545)
+|+|+.||+.
T Consensus 139 lp~l~~LDF~ 148 (233)
T KOG1644|consen 139 LPSLRTLDFQ 148 (233)
T ss_pred cCcceEeehh
Confidence 5555555554
No 201
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0087 Score=65.18 Aligned_cols=45 Identities=16% Similarity=0.029 Sum_probs=38.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|.+..++.+..++..+. -...+.++|..|+||||+|+.+++.
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 89999999999999988653 2346779999999999999999883
No 202
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.92 E-value=0.0031 Score=66.14 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=57.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
..-+.|+|..|+|||+|++++++ .+.... ..+++++ ..++...+...+.... .....++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-----------~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH-----------KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-----------hHHHHHH
Confidence 45688999999999999999998 443322 2234443 3456666666553210 1122334
Q ss_pred HhcCCceEEEEEcCCCCC--hhhH-HHHHhhCCC-CCCCcEEEEecCC
Q 039831 149 DYLTNKKYFIVLDDVFHY--SEMW-SDVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~~--~~~~-~~l~~~~~~-~~~gs~iivTtR~ 192 (545)
+.++ ..-+||+||+... ...+ +.+...+.. ...|..||+|+..
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 4443 3448889999751 1222 333333321 2345578888764
No 203
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.012 Score=63.41 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=37.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+.+..+. -.....++|+.|.||||+|+.+++
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998754 345677899999999999988876
No 204
>PRK07667 uridine kinase; Provisional
Probab=96.90 E-value=0.0018 Score=59.85 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.+.+........+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5667777766555668999999999999999999988
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0023 Score=66.79 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=65.1
Q ss_pred ceeeecccHHHHHHHHHcC---C-------CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHH
Q 039831 49 DISEFERGREKFFDLLIEG---P-------SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKI 118 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 118 (545)
++-|.+..+.++.+++..- + ...+=|.++|++|+|||.||+++++ +..-.| ++++-+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP------ 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch------
Confidence 8899999999999888542 1 2456678999999999999999999 555454 222221
Q ss_pred HHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 119 LEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 119 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
.|++.+ ...+++.+.+...+.-..-++++++|+++-
T Consensus 258 --eivSGv---------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGV---------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhccc---------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233333 333455555555666667899999999964
No 206
>PRK06620 hypothetical protein; Validated
Probab=96.88 E-value=0.0017 Score=60.99 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+.+-|||++|+|||+|++++++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 66899999999999999998883
No 207
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.011 Score=63.58 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=38.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998653 345688999999999999999988
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.87 E-value=0.0058 Score=59.42 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHH
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKI 118 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 118 (545)
++++..++..+ +-|.++|.+|+|||++|+++++ ..... .+.+......+..++
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHH
Confidence 44455555432 3456899999999999999997 34322 334544444444443
No 209
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.86 E-value=0.002 Score=72.76 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+.++++++..|.... ..-+.++|.+|+||||+|+.+++
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 78999999999999987754 23445899999999999999998
No 210
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.0024 Score=66.78 Aligned_cols=99 Identities=11% Similarity=0.171 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
..-+.|+|+.|+|||+||+++++ .+...-..+++++ ...+...+...+... . ...+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 35678999999999999999999 4443323345554 233444444444221 1 1223333
Q ss_pred cCCceEEEEEcCCCCChh---h-HHHHHhhCCC-CCCCcEEEEecCC
Q 039831 151 LTNKKYFIVLDDVFHYSE---M-WSDVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 151 l~~k~~LlVlDdv~~~~~---~-~~~l~~~~~~-~~~gs~iivTtR~ 192 (545)
++ ..-+|++||+.. .. . .+.+...+.. ...|..||+||..
T Consensus 200 ~~-~~dvLiIDDiq~-l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 200 YR-NVDALFIEDIEV-FSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred cc-cCCEEEEcchhh-hcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 33 345788899865 21 1 1222222211 1235678888854
No 211
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.81 E-value=0.0013 Score=57.22 Aligned_cols=44 Identities=16% Similarity=0.017 Sum_probs=31.7
Q ss_pred eeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 51 SEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 51 vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
||.-..++++.+.+..-......|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56677777777777543223355789999999999999999984
No 212
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.81 E-value=0.018 Score=55.89 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=72.5
Q ss_pred cHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---ecCCCCHHHHHHHHHHHhCC-CCC
Q 039831 56 GREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR---VSLLYDFGKILEDIIKSVMP-PSR 131 (545)
Q Consensus 56 ~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~~ 131 (545)
..+.+...+... .+..-++|+|..|+|||||.+.++. .+.. ..+.+++. +.......+ +...+.. +..
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~--~~~~-~~G~i~~~g~~v~~~d~~~e----i~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLAR--ILST-GISQLGLRGKKVGIVDERSE----IAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhC--ccCC-CCceEEECCEEeecchhHHH----HHHHhcccccc
Confidence 445555555543 2457899999999999999999998 3432 23344442 111111222 2222211 111
Q ss_pred --ccccCCCCHHHHHHHHHHhcC-CceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 132 --VRVIIGKDYQFKKSILRDYLT-NKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 132 --~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
....+..+.......+...+. ..+-++++|.+.. .+.+..+...+. .|..||+||.+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 000111111111222333332 4788999999988 777777766653 4788999999877644
No 213
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.76 E-value=0.0052 Score=58.01 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC--CCCcccc
Q 039831 58 EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP--PSRVRVI 135 (545)
Q Consensus 58 ~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~~~~~ 135 (545)
+.+-.+|..+=..-.++.|.|.+|+||||+|.+++. .....=..++|++....+. +-++++...-.. ...-.-.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~ 81 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVF 81 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEE
Confidence 334444432213457899999999999999998876 3322233577887655554 223333322100 0000001
Q ss_pred CCCCHHHH---HHHHHHhcCCceEEEEEcCCCC
Q 039831 136 IGKDYQFK---KSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 136 ~~~~~~~~---~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
+..+..+. ...+...++.+.-++|+|-+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 82 EPMDFNEQGRAIQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred eCCCHHHHHHHHHHHHHHHhcCCcEEEEechHH
Confidence 11222222 2344444444466888888743
No 214
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0055 Score=55.42 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC--CCCHHHHHHHHHHHhC--CCCCccccC-------CCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL--LYDFGKILEDIIKSVM--PPSRVRVII-------GKD 139 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~--~~~~~~~~~-------~~~ 139 (545)
-.+++|+|..|.|||||.+.++.- . ....+.+++.-.. ....... ...++ .+.. .-.. -..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~-~~~~~t~~e~lLS~ 99 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDP-FLFSGTIRENILSG 99 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCc-hhccchHHHHhhCH
Confidence 468999999999999999999883 2 2334444432110 0111111 11111 1110 0000 111
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 140 YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 140 ~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
.+...-.+...+..++-++++|+-.. +....+.+...+.....+..||++|.+.....
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 22333456777778888999999865 22233333333322223567888888876543
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.74 E-value=0.003 Score=58.41 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=35.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHhCCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPP 129 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 129 (545)
++|+.++|+.|+||||.+..++. +.+..=..+..|+.... ....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 37899999999999997766665 33333234556665432 23444566666666643
No 216
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.74 E-value=0.0074 Score=57.46 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
....+|+|.|..|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 217
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.73 E-value=0.013 Score=52.75 Aligned_cols=114 Identities=17% Similarity=0.068 Sum_probs=63.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE-------EecCCCCH--HHHHHHHHHHhCCCCCccccCCCCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWV-------RVSLLYDF--GKILEDIIKSVMPPSRVRVIIGKDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 141 (545)
-.+++|+|..|+|||||++.++.-... ..+.+++ .+.+.... ..+.+.+... . ...-...+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~----~~~LS~G~ 96 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---W----DDVLSGGE 96 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---C----CCCCCHHH
Confidence 458999999999999999999884221 1222211 12222211 1222222210 1 11233345
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHH
Q 039831 142 FKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLL 196 (545)
Q Consensus 142 ~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~ 196 (545)
...-.+.+.+..++-++++|.--. +......+...+... +..||++|.+....
T Consensus 97 ~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 97 QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 555667777778888999999765 122233333333222 45688888876543
No 218
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00049 Score=65.46 Aligned_cols=203 Identities=14% Similarity=0.028 Sum_probs=106.6
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccc-cCCCCCCEEEccCCCC--CccChhhh
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGL-ENLYLLKYLKLNIPSL--KCLPSLLC 393 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~l~~~~i--~~lp~~i~ 393 (545)
..+. .++.+++-++.......+ . ..+.+++.|++|+++.|.+...-..+ -.+.+|+.|-|.++.+ +...+.+.
T Consensus 68 ~~~~--~v~elDL~~N~iSdWseI-~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVT--DVKELDLTGNLISDWSEI-G-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHhh--hhhhhhcccchhccHHHH-H-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 5666 788888877764321222 2 45679999999999999977433333 3678999999999874 34556677
Q ss_pred ccccCcEEecCCCCCCccc---Hhhhcc-cccceeeecCccC--CCCcccCcCCcccccccccccc---CCCchhhcCCC
Q 039831 394 TLLNLETLEMPSSHIDQSP---EDIWMM-QKLMHLNFGSITL--PAPPKNYSSSLKNLIFTSALNP---SSCTLDILFRL 464 (545)
Q Consensus 394 ~L~~L~~L~l~~~~l~~lp---~~~~~L-~~L~~L~l~~~~l--p~~~~~~~~~l~~L~~L~~~~~---~~~~~~~l~~l 464 (545)
.++.++.|.++.|++..+- +.+... +.++.|+..+|.. ..++-+.-..++++..+-...+ +...-.....+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 8888888888887443331 111111 1344444433310 0000000011222222221111 11111223344
Q ss_pred CCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c---CCCCCCCccEEEEe
Q 039831 465 PSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S---EYQFPPSLIQLSLS 524 (545)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P---~l~~l~~L~~L~L~ 524 (545)
+.+.-|.+..+......+ -..+.+++.|..|.+++.|....++- | -++.+++++.|+=+
T Consensus 224 p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 444455555544112222 24577888888888875211122211 2 34667788877633
No 219
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.72 E-value=0.014 Score=54.89 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=70.4
Q ss_pred ceeeecccHHHHHHHHHc--CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIE--GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|.+..++.|.+--.. ......-|.+||..|.|||++++++.+ +.... +.--|.+.+.
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~--~y~~~--GLRlIev~k~-------------- 89 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN--EYADQ--GLRLIEVSKE-------------- 89 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH--HHhhc--CceEEEECHH--------------
Confidence 899999999887764421 122345577899999999999999998 33221 1112222221
Q ss_pred CCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCC---CC-CcEEEEecCChhHHh
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDD---QN-GSRVLILVTEPTLLT 197 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~---~~-gs~iivTtR~~~v~~ 197 (545)
+-.+...+.+.++. +..||+|.+||+.- .+.....++..+..+ .+ ...|-.||.-++...
T Consensus 90 ---------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 ---------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ---------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 11233333444442 35699999999864 245566666666532 22 334455555555443
No 220
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.69 E-value=0.0033 Score=71.51 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=36.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+.++++++..|..... .-+.++|.+|+|||++|+.++.
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999977542 3345799999999999999888
No 221
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.69 E-value=0.0039 Score=61.30 Aligned_cols=135 Identities=15% Similarity=0.245 Sum_probs=71.0
Q ss_pred eeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcc-cccccceeEE----EEecCCCC---------HH
Q 039831 51 SEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNY-VKFYFDCLAW----VRVSLLYD---------FG 116 (545)
Q Consensus 51 vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~w----v~~~~~~~---------~~ 116 (545)
-+|..+..--.++|..++ +..|.+.|.+|.|||.||.++.=..- .+..|..++- +.++++.. +.
T Consensus 227 ~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 227 RPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred CcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 345555555556666654 89999999999999998855432111 2333433321 23443321 11
Q ss_pred HHHHHHHHHh---CCCCCccccCCCCHHHHHHHH----------HHhcCCc---eEEEEEcCCCCChhhHHHHHhhCCCC
Q 039831 117 KILEDIIKSV---MPPSRVRVIIGKDYQFKKSIL----------RDYLTNK---KYFIVLDDVFHYSEMWSDVVELLPDD 180 (545)
Q Consensus 117 ~~~~~i~~~l---~~~~~~~~~~~~~~~~~~~~l----------~~~l~~k---~~LlVlDdv~~~~~~~~~l~~~~~~~ 180 (545)
--++.|...+ ..... .. +...+.+ -.+++++ +.++|+|.+++ ... ..++..+...
T Consensus 305 PWmq~i~DnLE~L~~~~~------~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQN-LTp-heikTiltR~ 375 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNE------PG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQN-LTP-HELKTILTRA 375 (436)
T ss_pred chHHHHHhHHHHHhcccc------cc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhc-cCH-HHHHHHHHhc
Confidence 1122222222 22211 11 2222222 2234454 57999999988 321 2344445567
Q ss_pred CCCcEEEEecCChhHH
Q 039831 181 QNGSRVLILVTEPTLL 196 (545)
Q Consensus 181 ~~gs~iivTtR~~~v~ 196 (545)
+.||||+.|---.++-
T Consensus 376 G~GsKIVl~gd~aQiD 391 (436)
T COG1875 376 GEGSKIVLTGDPAQID 391 (436)
T ss_pred cCCCEEEEcCCHHHcC
Confidence 8899999887544443
No 222
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.69 E-value=0.0064 Score=55.10 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=63.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC--CCCHHHHHHHHHHHhCCCCCccccC-------CCCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL--LYDFGKILEDIIKSVMPPSRVRVII-------GKDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~ 141 (545)
-.+++|+|..|+|||||.+.++.- . ....+.+++.-.. ..........+.. ..+.. .-.. -...+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~--~~q~~-~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL--L-RPTSGRVRLDGADISQWDPNELGDHVGY--LPQDD-ELFSGSIAENILSGGQ 101 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--c-CCCCCeEEECCEEcccCCHHHHHhheEE--ECCCC-ccccCcHHHHCcCHHH
Confidence 358999999999999999999873 2 2233444432110 1111111111110 01110 0000 11223
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 142 FKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 142 ~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
...-.+...+..++-++++|+.-. +......+...+.. ...|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 344556777777888999999865 22223333333321 123677889888876543
No 223
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.68 E-value=0.0062 Score=54.63 Aligned_cols=116 Identities=10% Similarity=-0.022 Sum_probs=66.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC--CCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL--LYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
-.+++|+|..|+|||||.+.++.. .....+.+++.-.. ..+..+..+ ..++. -.+-...+...-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-----~~qLS~G~~qrl~la 94 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAM-----VYQLSVGERQMVEIA 94 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEE-----EEecCHHHHHHHHHH
Confidence 358999999999999999999873 23345555553111 111111110 01110 011233344555677
Q ss_pred HhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 149 DYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+.+-.++-++++|+.-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77888889999999865 23333333333322 123677899998876443
No 224
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.68 E-value=0.003 Score=55.10 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999986
No 225
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.68 E-value=0.0089 Score=55.29 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=44.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccc-cc---eeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFY-FD---CLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
||+|.|.+|+||||+|+++.. ..... +. ....++........... ..-........-......+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLR-DRKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHH-HHHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchh-hHhhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999988 44322 22 13333333322222222 2212111111101234567777777777
Q ss_pred HhcCCceEE
Q 039831 149 DYLTNKKYF 157 (545)
Q Consensus 149 ~~l~~k~~L 157 (545)
...+++.+-
T Consensus 78 ~L~~g~~i~ 86 (194)
T PF00485_consen 78 ALKNGGSIE 86 (194)
T ss_dssp HHHTTSCEE
T ss_pred HHhCCCccc
Confidence 766666543
No 226
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.67 E-value=0.0032 Score=60.92 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEecCCCCHHHHHHHHHHHhCCCCC-----ccccCCCCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFY----FDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-----VRVIIGKDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 141 (545)
-.+.=|+|.+|+|||.||..++-...+... =..++||+-...|..+.+. +|++....... -.-....+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 468889999999999999877653233222 1358899998999887775 56665543211 0001122334
Q ss_pred HHHHHH---HHhc-CCceEEEEEcCCCC
Q 039831 142 FKKSIL---RDYL-TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l---~~~l-~~k~~LlVlDdv~~ 165 (545)
++...+ ...+ ..+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 443333 3333 24556999999843
No 227
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.67 E-value=0.0098 Score=58.02 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHH--HHHHHHHHHhCCCCCccccCCCCH-HHHHH
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFG--KILEDIIKSVMPPSRVRVIIGKDY-QFKKS 145 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~ 145 (545)
.+.++++++|++|+||||.+..++. .....-..+.+++.. .+... +-++......+.+-.... ...+. ....+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~-~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQK-EGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCC-CCCCHHHHHHH
Confidence 3468999999999999998888876 333322345555543 23322 223333444432211001 11122 22234
Q ss_pred HHHHhcCCceEEEEEcCCCC
Q 039831 146 ILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 146 ~l~~~l~~k~~LlVlDdv~~ 165 (545)
.+.....+..-++++|-...
T Consensus 146 ~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHCCCCEEEEeCCCC
Confidence 44444434455777887654
No 228
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.66 E-value=0.0023 Score=57.81 Aligned_cols=104 Identities=19% Similarity=0.145 Sum_probs=64.4
Q ss_pred CCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhh-ccccCcEEecCCCCCCccc--Hhhhcccccceee
Q 039831 349 FKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLC-TLLNLETLEMPSSHIDQSP--EDIWMMQKLMHLN 425 (545)
Q Consensus 349 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~-~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~ 425 (545)
+.....+||++|.+..+ +.+..+..|.+|.+.+|.|+.+-+.+. -+++|.+|.+.+|.+.++- ..+..+|+|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34566778888876543 234567788888888888888766664 4566888888888766664 3456667777777
Q ss_pred ecCccCCC--CcccC-cCCcccccccccccc
Q 039831 426 FGSITLPA--PPKNY-SSSLKNLIFTSALNP 453 (545)
Q Consensus 426 l~~~~lp~--~~~~~-~~~l~~L~~L~~~~~ 453 (545)
+-+|.+-. .-+.| +..+++|++|+...+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 76653321 11001 145555555554444
No 229
>PRK08233 hypothetical protein; Provisional
Probab=96.64 E-value=0.0065 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 230
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.63 E-value=0.012 Score=62.99 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=34.1
Q ss_pred ceeeecccHHHHHHHHH---cC-------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLI---EG-------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.+. .. ....+=+.++|++|.|||++|+++++
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 89998888777766553 11 12234478999999999999999998
No 231
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0035 Score=57.97 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFY 100 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 100 (545)
.+.+|||.|.+|+||||+|+.+++ ..+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 468999999999999999999999 55443
No 232
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.61 E-value=0.014 Score=52.35 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=74.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---------------------ecCCC----------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR---------------------VSLLY---------------- 113 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------------~~~~~---------------- 113 (545)
-..+-++|.+|+|||||.+.+|..++.. .+.+|+. |-|++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4678899999999999999999854432 2233331 01111
Q ss_pred -----CHHHH---HHHHHHHhCCCCC--ccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--C-hhhHHHHHhhCCCC
Q 039831 114 -----DFGKI---LEDIIKSVMPPSR--VRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--Y-SEMWSDVVELLPDD 180 (545)
Q Consensus 114 -----~~~~~---~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~-~~~~~~l~~~~~~~ 180 (545)
...++ ....+..++.... .-..+-+.-++-.-.|.+.+-+++-+++=|.--. + .-.|+-+.-.-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 11122 2222222222221 1122344556777788899999999999996432 1 34565443322235
Q ss_pred CCCcEEEEecCChhHHhc
Q 039831 181 QNGSRVLILVTEPTLLTS 198 (545)
Q Consensus 181 ~~gs~iivTtR~~~v~~~ 198 (545)
..|..|++.|.+.++...
T Consensus 185 r~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 185 RLGTTVLMATHDLELVNR 202 (223)
T ss_pred hcCcEEEEEeccHHHHHh
Confidence 669999999999887763
No 233
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.61 E-value=0.0018 Score=68.08 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=39.6
Q ss_pred ceeeecccHHHHHHHHHc----CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 789999999999999932 234568999999999999999999998
No 234
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.60 E-value=0.0023 Score=66.38 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=39.4
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++.|.++.+++|.+.+... -...+-|.++|++|.|||++|+++++ .....|
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 7789999999998887421 02345677999999999999999999 555444
No 235
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.60 E-value=0.013 Score=53.04 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988887
No 236
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.57 E-value=0.013 Score=53.11 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE------ecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR------VSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKK 144 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 144 (545)
-.+++|+|..|+|||||.+.+..- . ....+.+++. +.+... -...+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl--~-~p~~G~i~~~g~~i~~~~q~~~----------------------LSgGq~qr 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ--L-IPNGDNDEWDGITPVYKPQYID----------------------LSGGELQR 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC--C-CCCCcEEEECCEEEEEEcccCC----------------------CCHHHHHH
Confidence 358999999999999999999873 2 2223333331 111110 12233445
Q ss_pred HHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 145 SILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 145 ~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
-.+.+.+..++-++++|.--. +....+.+...+.. ...+..||++|.+.....
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 566777778888999999764 12222333333321 112356888888876554
No 237
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0042 Score=69.00 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=36.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+++++++...|.... ..-+.++|.+|+|||++|+.++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998743 23345899999999999999987
No 238
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.57 E-value=0.0078 Score=64.48 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
...+.|+|..|+|||.|++++++ .....+ ..+++++ ..++..++...+... ..+ .++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~~----~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KGD----SFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cHH----HHH
Confidence 34588999999999999999999 554333 2345554 334444444443221 111 233
Q ss_pred HhcCCceEEEEEcCCCC--ChhhHH-HHHhhCCC-CCCCcEEEEecCC
Q 039831 149 DYLTNKKYFIVLDDVFH--YSEMWS-DVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~--~~~~~~-~l~~~~~~-~~~gs~iivTtR~ 192 (545)
+.+++ -=+||+||+.. ....|+ .+...+.. ...|..|||||+.
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 33332 35788999975 112332 22222221 2335678888876
No 239
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0035 Score=66.83 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=64.6
Q ss_pred ceeeecccHHHHHHHHHc----CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIK 124 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 124 (545)
+-.|.++..++|.+.|.- .+-.-+++++||++|+|||.||+.+++ .....| +=++++.-.|..+|-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR----- 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR----- 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc-----
Confidence 568999999999999953 223457999999999999999999999 777776 224445555444331
Q ss_pred HhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 125 SVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
+... -.-..=+..+...+++ .+.+.=+++||.++.
T Consensus 394 ---GHRR--TYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDK 428 (782)
T COG0466 394 ---GHRR--TYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDK 428 (782)
T ss_pred ---cccc--cccccCChHHHHHHHH-hCCcCCeEEeechhh
Confidence 1100 0111112222323322 245677899999975
No 240
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.55 E-value=0.009 Score=59.42 Aligned_cols=107 Identities=9% Similarity=0.077 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-
Q 039831 58 EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKF----YFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV- 132 (545)
Q Consensus 58 ~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~- 132 (545)
..+-++|..+=..-+++-|+|.+|+|||+||..++-...... .=..++||+....|..+++. +++..++.....
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~ 161 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAV 161 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHh
Confidence 344444543223457888999999999999977653222221 11368899999988888875 456666543210
Q ss_pred ----cccCCCCHHHHH---HHHHHhcC-CceEEEEEcCCCC
Q 039831 133 ----RVIIGKDYQFKK---SILRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 133 ----~~~~~~~~~~~~---~~l~~~l~-~k~~LlVlDdv~~ 165 (545)
.-....+.++.. ..+...+. .+--|||+|-+-.
T Consensus 162 l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 162 LDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred cCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 001122333333 33333443 3455899999854
No 241
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.0019 Score=61.30 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=40.8
Q ss_pred ceeeecccHHHHHHHHHcC---CCCcEEEEEEcCCCChHHHHHHHHhcCcccccc
Q 039831 49 DISEFERGREKFFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY 100 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 100 (545)
+|+|.++.++++.=++... +...--|.++|++|.||||||.-+++ ++...
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn 79 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVN 79 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCC
Confidence 8999999998888777542 34566789999999999999999999 55444
No 242
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0052 Score=55.73 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=64.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhC--CCCCccccC---------CCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVM--PPSRVRVII---------GKD 139 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~---------~~~ 139 (545)
-.+++|+|..|.|||||++.++... ....+.+++.-..-.... ..+...++ .+.. .-.. -..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~-~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEP-SLYENLTVRENLKLSG 98 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCC-ccccCCcHHHHhhcCH
Confidence 4689999999999999999998732 223444544211000000 01111111 0100 0000 111
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 140 YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 140 ~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
.+...-.+...+..++-++++|+.-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 23334467778888899999999865 12333333333322 123677999998877554
No 243
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.031 Score=56.56 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+.++|+++|.+|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988876
No 244
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0068 Score=55.23 Aligned_cols=121 Identities=15% Similarity=0.045 Sum_probs=63.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---ecCCC-CHHHHHHHHHHHhCCCCCccccC----------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR---VSLLY-DFGKILEDIIKSVMPPSRVRVII---------- 136 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~-~~~~~~~~i~~~l~~~~~~~~~~---------- 136 (545)
-.+++|+|..|+|||||++.++.. . ....+.+.+. +.... ........+.. ..+.. .-..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~--~~q~~-~~~~~~t~~~~l~~ 99 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL--E-EPDSGSILIDGEDLTDLEDELPPLRRRIGM--VFQDF-ALFPHLTVLENIAL 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEECCEEccccchhHHHHhhcEEE--EecCC-ccCCCCCHHHheee
Confidence 468999999999999999999873 2 2234444432 11100 01111111100 00100 0000
Q ss_pred -CCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CC-CCcEEEEecCChhHHh
Q 039831 137 -GKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQ-NGSRVLILVTEPTLLT 197 (545)
Q Consensus 137 -~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~-~gs~iivTtR~~~v~~ 197 (545)
-..-+...-.+...+..++-++++|+.-. +....+.+...+.. .. .|..||++|.+.....
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11123344556777778888999999765 22333333333322 11 2567888888876544
No 245
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0012 Score=61.97 Aligned_cols=81 Identities=21% Similarity=0.221 Sum_probs=39.9
Q ss_pred hcCCCcccEEEccCC--CCC-CCCccccCCCCCCEEEccCCCCCccC--hhhhccccCcEEecCCCCCCccc----Hhhh
Q 039831 346 FKRFKYLRVLNMGSA--VLD-QFPPGLENLYLLKYLKLNIPSLKCLP--SLLCTLLNLETLEMPSSHIDQSP----EDIW 416 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp----~~~~ 416 (545)
|..+++|+.|.++.| .+. .++.....+++|++|++++|+|+.+- ..+..+.+|..|++.+|....+- ..|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 445556666666666 322 33333333466666666666544321 12345555566666666433332 2344
Q ss_pred cccccceeee
Q 039831 417 MMQKLMHLNF 426 (545)
Q Consensus 417 ~L~~L~~L~l 426 (545)
.+++|++|+-
T Consensus 141 ll~~L~~LD~ 150 (260)
T KOG2739|consen 141 LLPSLKYLDG 150 (260)
T ss_pred Hhhhhccccc
Confidence 5555555554
No 246
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.51 E-value=0.0099 Score=58.43 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=46.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccc--cceeEEEEecCCC-CHHHHHHHHHHHhCCCCCccccCCCCHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFY--FDCLAWVRVSLLY-DFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSI 146 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 146 (545)
..++++|+|++|+||||++..++. ..... -..+..|+..... ...+.+......++.+-. ...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~--~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~ 266 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA--RFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKA 266 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHH
Confidence 457999999999999999988877 33221 1245556544321 122233333333333221 22344555555
Q ss_pred HHHhcCCceEEEEEcCC
Q 039831 147 LRDYLTNKKYFIVLDDV 163 (545)
Q Consensus 147 l~~~l~~k~~LlVlDdv 163 (545)
+... .+ .=+|++|..
T Consensus 267 l~~~-~~-~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL-RD-KDLILIDTA 281 (282)
T ss_pred HHHc-cC-CCEEEEeCC
Confidence 5443 33 357777753
No 247
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0022 Score=55.73 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=25.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc-cceeE
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFY-FDCLA 105 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~ 105 (545)
--|+|.||+|+||||+++.+.+ ..+.. |...-
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgG 38 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGG 38 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH--HHHhcCceeee
Confidence 4588999999999999999998 55444 65433
No 248
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.50 E-value=0.023 Score=60.65 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=91.0
Q ss_pred ceeeecccHHHHHHHHHcC--C-CCcEEEEEEcCCCChHHHHHHHHhcCcc---ccc---ccceeEEEEecCCCCHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG--P-SGLSVVAILDSSGFDKTAFAADTYNNNY---VKF---YFDCLAWVRVSLLYDFGKIL 119 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~---~F~~~~wv~~~~~~~~~~~~ 119 (545)
.+-+|+.+..+|.+++..- + ...+.+-|.|-+|.|||..+..|.+.-+ .++ .|+ .+.|..-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 5678999999999998542 2 3445889999999999999999887321 112 232 3344444455689999
Q ss_pred HHHHHHhCCCCCccccCCCCHHHHHHHHHHhcC-----CceEEEEEcCCCCC-hhhHHHHHhhCCC-CCCCcEEEEec
Q 039831 120 EDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT-----NKKYFIVLDDVFHY-SEMWSDVVELLPD-DQNGSRVLILV 190 (545)
Q Consensus 120 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~-~~~~~~l~~~~~~-~~~gs~iivTt 190 (545)
..|..++.+... ......+.+..++. .+.++|++|+++.. ...-+.+...|.| ..++||++|.+
T Consensus 476 ~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 476 EKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999988754 44555666666664 35789999998651 1223344445554 45688887765
No 249
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.47 E-value=0.0068 Score=60.12 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-ccccCCCCHHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-VRVIIGKDYQFKKSILR 148 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~ 148 (545)
.-+++-|+|++|+||||||.+++. .....=..++||+..+.++.. .+.+++.... -.-.+....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 457999999999999999988776 333333457799877666653 2344433211 00112234566666665
Q ss_pred HhcC-CceEEEEEcCCCC
Q 039831 149 DYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 149 ~~l~-~k~~LlVlDdv~~ 165 (545)
..++ +..-+||+|-|-.
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 5554 4567999999864
No 250
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.017 Score=57.58 Aligned_cols=44 Identities=7% Similarity=-0.058 Sum_probs=36.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|-++.++.+.+.+..+. -.....++|+.|+||+++|.++++
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 68899999999999887753 246888999999999999977765
No 251
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.45 E-value=0.013 Score=58.41 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc----ceeEEEEecCCCCHHHHHHHHHHHhCCCC
Q 039831 55 RGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF----DCLAWVRVSLLYDFGKILEDIIKSVMPPS 130 (545)
Q Consensus 55 ~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 130 (545)
.-.+.+-.+|..+=..-.++.|+|.+|+|||+||..++......... ..++||+....+...++ .++++.++...
T Consensus 80 tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~ 158 (316)
T TIGR02239 80 TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNP 158 (316)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCCh
Confidence 33445555554432346899999999999999998887522221111 25789998887777763 34555544322
Q ss_pred Cc-----cccCCCCHHHHH---HHHHHhcC-CceEEEEEcCCCC
Q 039831 131 RV-----RVIIGKDYQFKK---SILRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 131 ~~-----~~~~~~~~~~~~---~~l~~~l~-~k~~LlVlDdv~~ 165 (545)
.. .-....+.++.. ..+...+. .+--|||+|-+-.
T Consensus 159 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 159 EDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 10 001122333332 23333343 3556889998743
No 252
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.44 E-value=0.01 Score=59.64 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=57.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-----cccCCCCH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKF----YFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-----RVIIGKDY 140 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~ 140 (545)
.-.++-|+|.+|+|||+||..++-...... .-..++||+....|..+++.+ ++..++..... .-....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 457888999999999999987753222211 124688999999999888654 56666543210 01122334
Q ss_pred HHHHHH---HHHhcC-CceEEEEEcCCCC
Q 039831 141 QFKKSI---LRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 141 ~~~~~~---l~~~l~-~k~~LlVlDdv~~ 165 (545)
++.... +...+. .+--|||+|-+-.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 433322 222332 3355788888743
No 253
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.022 Score=54.15 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=72.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcc-ccc----------cc---ceeEEEEe----cCCC--CH----------------
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNY-VKF----------YF---DCLAWVRV----SLLY--DF---------------- 115 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~-~~~----------~F---~~~~wv~~----~~~~--~~---------------- 115 (545)
..++|+|+.|+|||||.+.+..--+ .++ .+ ..+.||.= ...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987211 000 01 12445531 1111 11
Q ss_pred ------HHHHHHHHHHhCCCCC-ccccCCCCHHHH-HHHHHHhcCCceEEEEEcCCCC--C---hhhHHHHHhhCCCCCC
Q 039831 116 ------GKILEDIIKSVMPPSR-VRVIIGKDYQFK-KSILRDYLTNKKYFIVLDDVFH--Y---SEMWSDVVELLPDDQN 182 (545)
Q Consensus 116 ------~~~~~~i~~~l~~~~~-~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~--~---~~~~~~l~~~~~~~~~ 182 (545)
.+.....++.++.... ++.+...+-.|. .-.|.+.|..++=|++||.--. + ....-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2444555555555433 223334444444 4566888999999999998643 1 23333344433322
Q ss_pred CcEEEEecCChhHHh
Q 039831 183 GSRVLILVTEPTLLT 197 (545)
Q Consensus 183 gs~iivTtR~~~v~~ 197 (545)
|..||++|-+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 889999999977555
No 254
>PRK14974 cell division protein FtsY; Provisional
Probab=96.42 E-value=0.022 Score=57.01 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccc-cceeEEEEecCCCCH--HHHHHHHHHHhCCCCCccccCCCCHHH-HHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFY-FDCLAWVRVSLLYDF--GKILEDIIKSVMPPSRVRVIIGKDYQF-KKS 145 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~ 145 (545)
+..+|+++|++|+||||++..++. ..+.. + .++.+. .+.+.. .+-++..+..++.+-... ....+... ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~-~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKH-KYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecc-cCCCCHHHHHHH
Confidence 368999999999999998877776 33322 3 233343 233332 233455566655432211 11222222 223
Q ss_pred HHHHhcCCceEEEEEcCCCC
Q 039831 146 ILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 146 ~l~~~l~~k~~LlVlDdv~~ 165 (545)
.+...-....-+|++|-...
T Consensus 214 ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHhCCCCEEEEECCCc
Confidence 33322222223888888764
No 255
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.41 E-value=0.011 Score=55.76 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|||.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 256
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.40 E-value=0.021 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999988
No 257
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.40 E-value=0.036 Score=57.60 Aligned_cols=92 Identities=15% Similarity=-0.016 Sum_probs=50.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC-CCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL-LYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
...+|.++|.+|+||||.|..++. ..+..-..+..|+... .....+.++.++.+++.+-... ....+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~-~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD-PDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEec-CCccCHHHHHHHHH
Confidence 468999999999999999998887 4433212344454332 1223444556666665432210 11223333333333
Q ss_pred HhcCCceEEEEEcCCCC
Q 039831 149 DYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~ 165 (545)
+.+++. -+||+|....
T Consensus 171 ~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 171 EKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHhhcC-CEEEEECCCc
Confidence 333343 5688888753
No 258
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.01 Score=52.78 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=64.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC--CHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY--DFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRD 149 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 149 (545)
.+++|+|..|.|||||.+.++.. +. ...+.+++.-.... ..... ...+... .+-...+...-.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~~~~~~~~~----~~~i~~~-----~qlS~G~~~r~~l~~ 93 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDIAKLPLEEL----RRRIGYV-----PQLSGGQRQRVALAR 93 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEcccCCHHHH----HhceEEE-----eeCCHHHHHHHHHHH
Confidence 68999999999999999999983 32 34555555321111 11111 1111110 001223444555777
Q ss_pred hcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 150 YLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 150 ~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
.+...+-++++|..-. +......+...+.. ...+..+|++|.+.....
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7777888999999865 12333333333321 112567888988877554
No 259
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.39 E-value=0.015 Score=53.86 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=52.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL 151 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 151 (545)
+++.|.|.+|.||||+.+.+.. .+...=..++++. ++- +....+....+.... . +...+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~a----pT~-~Aa~~L~~~~~~~a~-------T---i~~~l~~~~ 81 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLA----PTN-KAAKELREKTGIEAQ-------T---IHSFLYRIP 81 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEE----SSH-HHHHHHHHHHTS-EE-------E---HHHHTTEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEEC----CcH-HHHHHHHHhhCcchh-------h---HHHHHhcCC
Confidence 6788899999999999988877 3333211233332 111 111223333322111 0 000000000
Q ss_pred ---------CCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChhH
Q 039831 152 ---------TNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPTL 195 (545)
Q Consensus 152 ---------~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 195 (545)
..++-++|+|++.- ....+..+....+. .|+|+|+.=-..+.
T Consensus 82 ~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 82 NGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp CEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred cccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 12335999999876 24567777777654 47888876544443
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.39 E-value=0.0076 Score=59.81 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-ccccCCCCHHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-VRVIIGKDYQFKKSILR 148 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~ 148 (545)
.-+++-|+|++|+||||||.+++. .....-..++||+....++.. .+.+++.... -.-.+..+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 457888999999999999998776 333333567899877776653 2333332211 00112234566666665
Q ss_pred HhcC-CceEEEEEcCCCC
Q 039831 149 DYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 149 ~~l~-~k~~LlVlDdv~~ 165 (545)
..++ +..-+||+|-|-.
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 5554 3567899999754
No 261
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0025 Score=59.91 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred hhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCC--CC-CccChhhhccccCcEEecCCCCCCccc--Hhhhcc
Q 039831 344 IFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIP--SL-KCLPSLLCTLLNLETLEMPSSHIDQSP--EDIWMM 418 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~--~i-~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L 418 (545)
.....+..|..|++.++.++++ ..+..|++|++|.++.| .+ ..++....++++|++|++++|+++.+. ..+..+
T Consensus 37 gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 4556677788888888887643 23447889999999999 43 356555667799999999999665432 236778
Q ss_pred cccceeeecCccCCCCc---ccCcCCcccccccccccc
Q 039831 419 QKLMHLNFGSITLPAPP---KNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 419 ~~L~~L~l~~~~lp~~~---~~~~~~l~~L~~L~~~~~ 453 (545)
.+|..|++..|..+.-- .+-|.-+++|..|+...+
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88999999888554310 000256788888988777
No 262
>PRK10867 signal recognition particle protein; Provisional
Probab=96.39 E-value=0.018 Score=59.68 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877766
No 263
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.38 E-value=0.045 Score=50.32 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=73.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe-------------------cCCCC-----------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV-------------------SLLYD----------------- 114 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-------------------~~~~~----------------- 114 (545)
-.||+|+|++|+|||||-+.+..=+.+. .+.+||.- -|.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 4699999999999999999987633332 34444421 12221
Q ss_pred --------HHHHHHHHHHHhCCCCC--ccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CC
Q 039831 115 --------FGKILEDIIKSVMPPSR--VRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQ 181 (545)
Q Consensus 115 --------~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~ 181 (545)
.++....++..++..+. ....+-+..++-.-.|.+.|.-++-++.+|..-+ +.+....+...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 23344455555554433 1122334445666788899999999999999866 12222222222221 34
Q ss_pred CCcEEEEecCChhHHh
Q 039831 182 NGSRVLILVTEPTLLT 197 (545)
Q Consensus 182 ~gs~iivTtR~~~v~~ 197 (545)
.|-..|+.|..-.-|.
T Consensus 185 eGmTMivVTHEM~FAr 200 (240)
T COG1126 185 EGMTMIIVTHEMGFAR 200 (240)
T ss_pred cCCeEEEEechhHHHH
Confidence 4667777787766666
No 264
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.38 E-value=0.024 Score=53.18 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-.+++|+|..|+|||||++.++..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 265
>PRK04040 adenylate kinase; Provisional
Probab=96.38 E-value=0.0077 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 266
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00029 Score=66.38 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=67.9
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh--hhhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS--LLCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~ 400 (545)
+++.|.++++.. ..+ ....+++.|++|.|+-|.|+++ ..+..+++|+.|.|+.|.|..+.+ .+.+|++|++
T Consensus 20 ~vkKLNcwg~~L---~DI---sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGL---DDI---SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCc---cHH---HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 667777777663 222 5667888888888888888865 345677888888888888877643 4678888888
Q ss_pred EecCCC-CCCccc-----Hhhhcccccceee
Q 039831 401 LEMPSS-HIDQSP-----EDIWMMQKLMHLN 425 (545)
Q Consensus 401 L~l~~~-~l~~lp-----~~~~~L~~L~~L~ 425 (545)
|-|..| -..+-+ ..+.-||+|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888877 333333 2356677787776
No 267
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.36 E-value=0.013 Score=58.58 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=25.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
...+.++|||++|.|||.+|+++++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 4578999999999999999999999 444433
No 268
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.35 E-value=0.0079 Score=55.47 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=36.4
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++||-++.++.+.-...+++ ++-+.|.||+|+||||=+..+++
T Consensus 28 dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 99999999999887766654 77788999999999997777766
No 269
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.031 Score=56.25 Aligned_cols=132 Identities=8% Similarity=0.030 Sum_probs=68.8
Q ss_pred ceee-ecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccccee--------EEEEecCCCCHHHHH
Q 039831 49 DISE-FERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCL--------AWVRVSLLYDFGKIL 119 (545)
Q Consensus 49 ~~vG-r~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--------~wv~~~~~~~~~~~~ 119 (545)
.++| -+..++.+.+.+..+. -.....++|+.|+||||+|+.+.+.---.+..... -.+.....+|...+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i- 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV- 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe-
Confidence 4566 5556667777765543 34567899999999999998886621001100000 00000001110000
Q ss_pred HHHHHHhCCCCCccccCCCCHHHHHHHHHHh----cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 120 EDIIKSVMPPSRVRVIIGKDYQFKKSILRDY----LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 120 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.. +......+++.+.+... ..+.+-.+|+|++.. ..+....+...+..-..++.+|++|.+..
T Consensus 84 -------~~-----~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 84 -------AP-----DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred -------cc-----ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 00 00112334443333221 234556789999976 24566777777765455777777776644
No 270
>PTZ00301 uridine kinase; Provisional
Probab=96.34 E-value=0.004 Score=58.14 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|||.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 271
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0049 Score=65.55 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=66.7
Q ss_pred ceeeecccHHHHHHHHHc----CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIK 124 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 124 (545)
+-.|+++.+++|.+++.- ++-.-++++.+|++|||||.+|+.++. .....| +=++++.-.|..+|-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk----- 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK----- 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc-----
Confidence 668999999999999953 334568999999999999999999999 666665 235566666655542
Q ss_pred HhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 125 SVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
+... -.-..-+..+.+.+++ .+...=|+.+|.|+.
T Consensus 482 ---GHRR--TYVGAMPGkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 482 ---GHRR--TYVGAMPGKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred ---ccce--eeeccCChHHHHHHHh-hCCCCceEEeehhhh
Confidence 1100 0112222333334433 234567888899875
No 272
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.33 E-value=0.011 Score=56.83 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=77.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEE-EEecCCCCHHHHHHHHHHHhC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAW-VRVSLLYDFGKILEDIIKSVM 127 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~i~~~l~ 127 (545)
+++|-+..++-+.+.+... ..++...+|++|.|||+-|.+++..---.+-|.+++. .++|....+. +.
T Consensus 37 e~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vv-------- 105 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VV-------- 105 (346)
T ss_pred hhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-ch--------
Confidence 8999999999999999883 4788899999999999998888773112345655443 2233322211 00
Q ss_pred CCCCccccCCCCHHHHHHHHHHhcC--Cce-EEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 128 PPSRVRVIIGKDYQFKKSILRDYLT--NKK-YFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~l~--~k~-~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
. ....+.+.+......... -++ -.+|||++.. ..+.|..+.....+....+|-|+.+.+-
T Consensus 106 r------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 106 R------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred h------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 0 001111111111110010 123 4789999987 3578999998887766667766665543
No 273
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.033 Score=52.12 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=68.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-------------cc-----ccceeE--EEEecCCCCH----HHH--------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-------------KF-----YFDCLA--WVRVSLLYDF----GKI-------- 118 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~-----~F~~~~--wv~~~~~~~~----~~~-------- 118 (545)
-.++||+|..|+||||||+.+.--.+- .. .|..+- |=+-....+. .++
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 468999999999999999998752110 00 121111 2111122222 211
Q ss_pred --------HHHHHHHhCCCCC--ccccCCCCHHHH-HHHHHHhcCCceEEEEEcCCCC--Ch----hhHHHHHhhCCCCC
Q 039831 119 --------LEDIIKSVMPPSR--VRVIIGKDYQFK-KSILRDYLTNKKYFIVLDDVFH--YS----EMWSDVVELLPDDQ 181 (545)
Q Consensus 119 --------~~~i~~~l~~~~~--~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~--~~----~~~~~l~~~~~~~~ 181 (545)
..+++.+++.+.. .+.....+..++ .-.|.+.|.-++-+||+|..-+ +. ..|+-+... ...
T Consensus 113 ~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l--~~~ 190 (252)
T COG1124 113 GLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL--KKE 190 (252)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH--HHh
Confidence 2344444444332 111112222333 3467788888999999999754 11 223332221 123
Q ss_pred CCcEEEEecCChhHHhc
Q 039831 182 NGSRVLILVTEPTLLTS 198 (545)
Q Consensus 182 ~gs~iivTtR~~~v~~~ 198 (545)
.+--+|+.|.+-.++..
T Consensus 191 ~~lt~l~IsHdl~~v~~ 207 (252)
T COG1124 191 RGLTYLFISHDLALVEH 207 (252)
T ss_pred cCceEEEEeCcHHHHHH
Confidence 46679999999888884
No 274
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.014 Score=57.48 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=75.6
Q ss_pred ceeeecccHHHHHHHHHcC----C-------CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHH
Q 039831 49 DISEFERGREKFFDLLIEG----P-------SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGK 117 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~----~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 117 (545)
++-|.++.+++|.+...-. + +..+=|..||++|.|||-||++|++ +....| +.+..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH-----
Confidence 7788999999999887432 1 3456678999999999999999999 555444 443332
Q ss_pred HHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcC-CceEEEEEcCCCC------------Chh---hHHHHHhhCCCC-
Q 039831 118 ILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT-NKKYFIVLDDVFH------------YSE---MWSDVVELLPDD- 180 (545)
Q Consensus 118 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~------------~~~---~~~~l~~~~~~~- 180 (545)
.++++.-++. ..+...+.+.-+ ..+..|.+|.++. +.+ ..-.+...+..+
T Consensus 220 ---ElVqKYiGEG----------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ---ELVQKYIGEG----------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ---HHHHHHhccc----------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 2233332322 123333344334 3589999998852 011 122333333332
Q ss_pred -CCCcEEEEecCChhHHh
Q 039831 181 -QNGSRVLILVTEPTLLT 197 (545)
Q Consensus 181 -~~gs~iivTtR~~~v~~ 197 (545)
...-|||..|.-.++..
T Consensus 287 ~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 287 PRGNVKVIMATNRPDILD 304 (406)
T ss_pred CCCCeEEEEecCCccccC
Confidence 23568999888776654
No 275
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.015 Score=56.41 Aligned_cols=94 Identities=13% Similarity=-0.028 Sum_probs=58.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH-hCCCCCccccCCCCHHHHHHHH
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS-VMPPSRVRVIIGKDYQFKKSIL 147 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~l 147 (545)
..-+++=|+|+.|.||||+|-+++- .....-..++||+..+.++...+. ++... +..--..+........++.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4568899999999999999988877 344444478999999999987764 33333 2111110111122223334444
Q ss_pred HHhcCCceEEEEEcCCCC
Q 039831 148 RDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 148 ~~~l~~k~~LlVlDdv~~ 165 (545)
.+....+--|+|+|.|-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 444444466999999854
No 276
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.33 E-value=0.012 Score=66.21 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=39.8
Q ss_pred ceeeecccHHHHHHHHHc----CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
+++|.++.++.|.+++.. .....+++.++|++|+|||++|+++++ .....|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 678999999999887742 122345899999999999999999999 554444
No 277
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.03 Score=56.82 Aligned_cols=87 Identities=21% Similarity=0.107 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecC-CCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSL-LYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSIL 147 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 147 (545)
-++++++|+.|+||||++..++. +....+ ..+..|.... .....+-++.....++.+.. ...+..++...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHHHHH
Confidence 57999999999999999999887 332222 3455555332 22334445555555554322 122223333333
Q ss_pred HHhcCCceEEEEEcCCCC
Q 039831 148 RDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 148 ~~~l~~k~~LlVlDdv~~ 165 (545)
. .+.++ -++++|....
T Consensus 211 ~-~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 211 A-ELRNK-HMVLIDTIGM 226 (374)
T ss_pred H-HhcCC-CEEEEcCCCC
Confidence 3 33344 4566888754
No 278
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.055 Score=56.32 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=26.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc--cccceeEEEEec
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK--FYFDCLAWVRVS 110 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~ 110 (545)
.+++.++|++|+||||++..++. ... ..-..+..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~--~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA--RYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEECC
Confidence 46999999999999998877766 332 222345566543
No 279
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.28 E-value=0.0096 Score=66.84 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=36.9
Q ss_pred ceeeecccHHHHHHHHHcC--------C---CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG--------P---SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--------~---~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.|.++.+++|.+++... . ...+-|.++|++|+|||++|+++++
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 7899999999998887421 0 2345688999999999999999998
No 280
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.039 Score=51.64 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 145 SILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 145 ~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
-.+...+..++-++++|..-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 346666777788999999865 22223333333321 123677999998877554
No 281
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.25 E-value=0.018 Score=52.68 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC--CCCHHHHHH-HHHHHhCCCCCc--cccC---------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL--LYDFGKILE-DIIKSVMPPSRV--RVII--------- 136 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~-~i~~~l~~~~~~--~~~~--------- 136 (545)
-.+++|+|..|+|||||.+.++.-. ....+.+++.-.. ..+.....+ .+.. ..+... .-..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~--~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR---PPASGEITLDGKPVTRRSPRDAIRAGIAY--VPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCccCHHHHHhCCeEE--ecCCcccCcccCCCcHHHHHH
Confidence 3589999999999999999999732 2223344432110 001011000 0000 000000 0000
Q ss_pred ----CCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 137 ----GKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 137 ----~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
-...+...-.+...+..++-++++|+.-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 101 ~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred HHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 11112223356777778888999999865 23333344333332 123677999998865443
No 282
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.25 E-value=0.026 Score=56.52 Aligned_cols=107 Identities=9% Similarity=0.043 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc----ceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-
Q 039831 58 EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF----DCLAWVRVSLLYDFGKILEDIIKSVMPPSRV- 132 (545)
Q Consensus 58 ~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~- 132 (545)
..+-+.|..+=..-.++-|+|.+|+|||++|.+++-.......+ ..++||+....++...+. +++..++.....
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~ 167 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEV 167 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhh
Confidence 33444443321345788899999999999998887532221111 368899998888877765 444544432110
Q ss_pred -cc---cCCCCH---HHHHHHHHHhcCC--ceEEEEEcCCCC
Q 039831 133 -RV---IIGKDY---QFKKSILRDYLTN--KKYFIVLDDVFH 165 (545)
Q Consensus 133 -~~---~~~~~~---~~~~~~l~~~l~~--k~~LlVlDdv~~ 165 (545)
.. ....+. ......+...+.. +--|||+|-+-.
T Consensus 168 l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 168 LDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 00 011111 2223444455543 344888898743
No 283
>PRK09354 recA recombinase A; Provisional
Probab=96.24 E-value=0.011 Score=59.18 Aligned_cols=100 Identities=16% Similarity=0.007 Sum_probs=61.0
Q ss_pred HHHHHHH-cCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-ccccC
Q 039831 59 KFFDLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-VRVII 136 (545)
Q Consensus 59 ~i~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~ 136 (545)
.+-.+|- .+=..-+++-|+|++|+||||||.+++. .....=..++||+....++.. .+.+++.... -.-.+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~q 119 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQ 119 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEec
Confidence 3444444 2213457899999999999999988876 333333568899888777753 3444443211 00112
Q ss_pred CCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 039831 137 GKDYQFKKSILRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 137 ~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 165 (545)
....++....+...++ ++.-+||+|-|-.
T Consensus 120 p~~~Eq~l~i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 120 PDTGEQALEIADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeChhh
Confidence 2345666666655554 3567899999854
No 284
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.054 Score=54.37 Aligned_cols=41 Identities=7% Similarity=0.242 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 154 KKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 154 k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
++-.+|+|++.. +.+....+...+-.-..++.+|+||.+.+
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 344456799987 35667777766654445677777777754
No 285
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.21 E-value=0.021 Score=59.11 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC--ccccCCCC-----HHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR--VRVIIGKD-----YQFK 143 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~-----~~~~ 143 (545)
-..++|+|..|+|||||++.+.... ....++++..-.+..++.++....+.......- ....+... ....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4679999999999999999988732 223344444433455555555444443311100 00001111 1222
Q ss_pred HHHHHHhc--CCceEEEEEcCCCC
Q 039831 144 KSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 144 ~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.-.+.+++ +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 33445555 47899999999854
No 286
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.21 E-value=0.012 Score=59.18 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=36.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|....++++.+.+..-...-.-|.|+|..|+||+++|++++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 689999999999888865322234577999999999999999987
No 287
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.067 Score=54.75 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccc--cccceeEEEEecCCCCHHH--HHHHHHHHhCCCCCccccCCCCHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVK--FYFDCLAWVRVSLLYDFGK--ILEDIIKSVMPPSRVRVIIGKDYQFKKS 145 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 145 (545)
..++|.++|..|+||||.+..++...... .+=..+..|++. .+...+ -++..+..++.+-. ...+.+.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE----eeCcHHHHHH
Confidence 35799999999999999888887622211 111234445444 333322 24444444444321 2233455555
Q ss_pred HHHHhcCCceEEEEEcCCCC
Q 039831 146 ILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 146 ~l~~~l~~k~~LlVlDdv~~ 165 (545)
.+.+. .+.-+|++|-...
T Consensus 248 ~L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHHh--CCCCEEEEcCCCC
Confidence 55443 3456778888754
No 288
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.20 E-value=0.04 Score=51.65 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+.+.+..++-+++||..-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 139 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3344556666777788999999865 22323333333321 123677999998876554
No 289
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.18 E-value=0.026 Score=53.27 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-.+++|+|..|+|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999863
No 290
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.17 E-value=0.036 Score=52.59 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDD--QNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~--~~gs~iivTtR~~~v~~ 197 (545)
+...-.+.+.+..++-++++|+.-. +....+.+...+... ..|..||++|.+.....
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 3344556777777888999999865 233344444444321 23677999998876544
No 291
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.17 E-value=0.017 Score=64.33 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=37.2
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|....++++.+.+..-...-.-|.|+|..|.|||++|+++++.
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 7999999999988777543222346789999999999999999984
No 292
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.17 E-value=0.0035 Score=53.43 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
|+|.|..|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999998
No 293
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.17 E-value=0.053 Score=50.97 Aligned_cols=127 Identities=13% Similarity=-0.011 Sum_probs=65.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-ccc--cce-----------eEEEEecC----CCCHH---------------H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KFY--FDC-----------LAWVRVSL----LYDFG---------------K 117 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~~-----------~~wv~~~~----~~~~~---------------~ 117 (545)
-.+++|+|..|+|||||++.++..... .+. |+. +.++.-.. ..+.. +
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 116 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ 116 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHH
Confidence 468999999999999999999874221 110 111 22332110 01111 1
Q ss_pred HHHHHHHHhCCCCC-cc-ccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCC
Q 039831 118 ILEDIIKSVMPPSR-VR-VIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 118 ~~~~i~~~l~~~~~-~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~ 192 (545)
....++..++.... .. ...-...+...-.+.+.+-.++-++++|..-. +....+.+...+.. ...|..||++|.+
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 117 MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 12233333332211 00 01122224445566666777778999999865 12333333333321 1235679999988
Q ss_pred hhHHh
Q 039831 193 PTLLT 197 (545)
Q Consensus 193 ~~v~~ 197 (545)
...+.
T Consensus 197 ~~~~~ 201 (214)
T PRK13543 197 AYAAP 201 (214)
T ss_pred hhhhh
Confidence 77554
No 294
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.14 E-value=0.036 Score=59.94 Aligned_cols=46 Identities=17% Similarity=-0.000 Sum_probs=38.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.++|....++++.+.+..-...-..|.|+|..|+|||++|+.+++.
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 8999999999999888653223345679999999999999999984
No 295
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.14 E-value=0.0044 Score=58.10 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+..+|+|+|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999998
No 296
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.13 E-value=0.067 Score=49.94 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+.+.+..++-++++|+... +....+.+...+.....|..||++|.+...+.
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 3444556666777888999999865 23333333333332223677888888766543
No 297
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.13 E-value=0.033 Score=55.99 Aligned_cols=109 Identities=9% Similarity=0.070 Sum_probs=63.5
Q ss_pred cHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 039831 56 GREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY----FDCLAWVRVSLLYDFGKILEDIIKSVMPPSR 131 (545)
Q Consensus 56 ~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 131 (545)
-...+-++|..+=..-.++-|+|.+|+|||+||..++-....... -..++||+....|..+++. +|+..++....
T Consensus 108 G~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~ 186 (342)
T PLN03186 108 GSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGA 186 (342)
T ss_pred CCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChh
Confidence 344454555433234678889999999999999877642222111 1268899999999887764 55666654321
Q ss_pred c-----cccCCCCHHHHHHHHH---Hhc-CCceEEEEEcCCCC
Q 039831 132 V-----RVIIGKDYQFKKSILR---DYL-TNKKYFIVLDDVFH 165 (545)
Q Consensus 132 ~-----~~~~~~~~~~~~~~l~---~~l-~~k~~LlVlDdv~~ 165 (545)
. .-....+.++....+. ..+ ..+--|||+|-+-.
T Consensus 187 ~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 187 DVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred hhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 0 0011233444333332 223 33566889998743
No 298
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.12 E-value=0.0048 Score=57.73 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|+|++|+||||||+.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999987
No 299
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.12 E-value=0.021 Score=57.04 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEecCCCCHHHHHHHHHHHhC
Q 039831 59 KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY----FDCLAWVRVSLLYDFGKILEDIIKSVM 127 (545)
Q Consensus 59 ~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~ 127 (545)
.+..+|..+=..-.++-|+|.+|+|||++|.+++........ =..++||+....+..+.+. +++..++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 344444332134578899999999999999888763222111 1268999998888877654 4445444
No 300
>PRK06547 hypothetical protein; Provisional
Probab=96.12 E-value=0.0078 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 301
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.11 E-value=0.038 Score=53.18 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=66.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-cc--ccce--eEEEEec----CCCCHHHHH--------------HHHHHHhC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KF--YFDC--LAWVRVS----LLYDFGKIL--------------EDIIKSVM 127 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~--~~wv~~~----~~~~~~~~~--------------~~i~~~l~ 127 (545)
-.+++|+|..|+|||||++.++..... .+ .++. +.++.-. ...++.+.+ ..++..++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 368999999999999999999884211 11 1222 2222210 111222222 12223332
Q ss_pred CCCC-ccccC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 039831 128 PPSR-VRVII-GKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDD--QNGSRVLILVTEPTLLT 197 (545)
Q Consensus 128 ~~~~-~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~--~~gs~iivTtR~~~v~~ 197 (545)
.... ..... -...+...-.+...|..++-+++||..-. +...-..+...+... ..|..||++|.+...+.
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2211 01111 22223344557777888889999999865 122223333333221 23677999999977665
No 302
>PRK13695 putative NTPase; Provisional
Probab=96.11 E-value=0.0069 Score=54.95 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 039831 73 VVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998873
No 303
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.11 E-value=0.017 Score=51.16 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=59.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---ecCCCCHHHHHHHHHHHhCCC--CCccccCCCCH------
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR---VSLLYDFGKILEDIIKSVMPP--SRVRVIIGKDY------ 140 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~------ 140 (545)
+.|-|++..|.||||.|...+- +...+=..+.+|- -........+++.+ ..+... .........+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 5788898899999999966655 3322211233332 22233333333333 000000 00000000111
Q ss_pred -HHHHHHHHHhcCC-ceEEEEEcCCCCC----hhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 141 -QFKKSILRDYLTN-KKYFIVLDDVFHY----SEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 141 -~~~~~~l~~~l~~-k~~LlVlDdv~~~----~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.+..+..++.+.. +-=|+|||++-.. .-..+.+...+.....+.-+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222334444444 4459999998640 1234455555544444678999999943
No 304
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.10 E-value=0.017 Score=55.76 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=58.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc--ccccceeEEEEecCC-CCHHHHHHHHHHHhCCCCC--c-cccCCCCH----
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV--KFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPPSR--V-RVIIGKDY---- 140 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~-~~~~~~~~---- 140 (545)
-+-++|.|-.|+|||+|+..+.++..+ +++-+.++++-+++. .+..++..++...=..... . ...+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356899999999999999998885331 123467888888754 4567777666554211111 0 00111111
Q ss_pred -HHHHHHHHHhcC---CceEEEEEcCCCC
Q 039831 141 -QFKKSILRDYLT---NKKYFIVLDDVFH 165 (545)
Q Consensus 141 -~~~~~~l~~~l~---~k~~LlVlDdv~~ 165 (545)
......+.++++ ++++|+++||+-.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 222345566663 6899999999855
No 305
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.10 E-value=0.051 Score=51.92 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=33.7
Q ss_pred HHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 039831 144 KSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDD--QNGSRVLILVTEPTLLT 197 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~--~~gs~iivTtR~~~v~~ 197 (545)
.-.+...+..++-++++|+.-. +....+.+...+... ..|..||++|.+...+.
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 3456777778888999999865 233333443333321 23677899988877554
No 306
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.08 E-value=0.013 Score=60.34 Aligned_cols=91 Identities=11% Similarity=0.137 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCCH------H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKDY------Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~~------~ 141 (545)
-..++|+|..|+|||||++.+++. .. .+.++..-+++. ..+.++.+.++..-..... .-...+.+. .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 467999999999999999999872 22 245556666544 3456666665443211111 000111111 2
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++.+|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 2234455655 57899999999854
No 307
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.021 Score=58.16 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=58.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRD 149 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 149 (545)
....+-|||..|.|||.|++++.+ ...........+.+ +.+.....++..+... -.+..++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~~-------------~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRDN-------------EMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHhh-------------hHHHHHH
Confidence 467899999999999999999999 66655543333322 2334444444444221 1234444
Q ss_pred hcCCceEEEEEcCCCC--ChhhHH-HHHhhCCC-CCCCcEEEEecCC
Q 039831 150 YLTNKKYFIVLDDVFH--YSEMWS-DVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 150 ~l~~k~~LlVlDdv~~--~~~~~~-~l~~~~~~-~~~gs~iivTtR~ 192 (545)
.. .-=++++||++- -.+.|+ .+...|-. ...|-.||+|++.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 44 334888999975 112222 22222211 1234488888855
No 308
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.015 Score=56.26 Aligned_cols=81 Identities=10% Similarity=0.119 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc--ccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNN--YVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
-|+|.+.|++|.|||+|++++++.- |..+.|....-|.+... .+ .++-..+ ...-...+.+.|.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sL----FSKWFsE------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SL----FSKWFSE------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HH----HHHHHhh------hhhHHHHHHHHHH
Confidence 4889999999999999999999964 34445555555554322 12 2222111 1223455566667
Q ss_pred HhcCCc--eEEEEEcCCCC
Q 039831 149 DYLTNK--KYFIVLDDVFH 165 (545)
Q Consensus 149 ~~l~~k--~~LlVlDdv~~ 165 (545)
+.+.++ -+.+.+|.|..
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 766665 34566788754
No 309
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.04 E-value=0.033 Score=56.01 Aligned_cols=45 Identities=13% Similarity=-0.034 Sum_probs=34.3
Q ss_pred eeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 50 ISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 50 ~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
++|....++++.+.+..-...-.-|.|+|..|.||+++|+++++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777778877777553223345789999999999999999873
No 310
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.04 E-value=0.033 Score=62.61 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=35.5
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.|.+..++++.+.+... -...+-|.++|++|+|||++|+++++
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 7889888888888776421 12234578899999999999999999
No 311
>PRK08149 ATP synthase SpaL; Validated
Probab=96.03 E-value=0.023 Score=58.58 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEec-CCCCHHHHHHHHHHHhCCCCCc---cccCC-----CCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVS-LLYDFGKILEDIIKSVMPPSRV---RVIIG-----KDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~---~~~~~-----~~~~ 141 (545)
-..++|+|..|+|||||+..+++.... +.++...+. +..++.++.............. ...+. ....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 467899999999999999999983221 233334443 4455666666666543322110 00011 1112
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ ++|++|+++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 3344455555 47899999999854
No 312
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.03 E-value=0.053 Score=50.55 Aligned_cols=56 Identities=16% Similarity=0.343 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLL 196 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~ 196 (545)
+...-.+...+..++-++++|+.-. +....+.+...+.. ...|..||++|.+....
T Consensus 139 ~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 139 EQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4444566777778889999999865 23333334333322 12367788888887643
No 313
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.03 E-value=0.055 Score=51.06 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=32.9
Q ss_pred HHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 144 KSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
.-.+...+..++-++++|..-. +....+.+...+.....+..||++|.+...+.
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 3455666777889999999865 22333333333322122467889988877554
No 314
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.01 E-value=0.075 Score=49.54 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-++++|..-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 131 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 131 QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3334456666777888999999865 22333333333322 123667889988876544
No 315
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.00 E-value=0.085 Score=49.92 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 142 FKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 142 ~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
...-.+...+-..+-++++|+.-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRE 213 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 334455666667778999999865 23333333333322 123677899998877554
No 316
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.00 E-value=0.032 Score=51.82 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=62.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE-------------------ecCCCCH--HHHHHHHHHHhCCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR-------------------VSLLYDF--GKILEDIIKSVMPP 129 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------------------~~~~~~~--~~~~~~i~~~l~~~ 129 (545)
-.+++|+|..|+|||||.+.++...... .-.+.+.+. +.+.+.. .....+++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~-- 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN-- 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCC-CCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc--
Confidence 4689999999999999999998842100 011111111 1111100 001111111110
Q ss_pred CCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 130 SRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
..-...+...-.+.+.+..++-++++|+.-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 103 -----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 -----EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 1122234445567777778888999999865 12333333333322 123677899998877655
No 317
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.00 E-value=0.027 Score=57.10 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=67.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
-+.|.|.|+.|+||||+.+++.+ .+.......++.- .++... ..... ..+..+.. . ..+.....+.++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~--~~~~~-~~~i~q~e---v-g~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIEY--VHRNK-RSLINQRE---V-GLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhh--hccCc-cceEEccc---c-CCCCcCHHHHHHHh
Confidence 46899999999999999999887 4544444555442 222111 00000 00000000 0 11123356667888
Q ss_pred cCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 151 LTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 151 l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
|+..+=.|++|.+.+ .+.+.....+ ...|..|+.|.-..+++.
T Consensus 192 lr~~pd~i~vgEird-~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 192 LREDPDVILIGEMRD-LETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred hccCCCEEEEeCCCC-HHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 888999999999998 7666553333 234666888877766655
No 318
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.98 E-value=0.0049 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 319
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.98 E-value=0.031 Score=53.31 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=59.0
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc------
Q 039831 59 KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV------ 132 (545)
Q Consensus 59 ~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------ 132 (545)
.+-+.|..+=..-.++.|+|.+|+|||++|.++... ..+. =..++|++..+. ..++.+.+ .+++....+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~ 87 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGY 87 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCC
Confidence 333444333234578999999999999999998542 2222 236788887654 34555443 333321110
Q ss_pred --------c--ccCCCCHHHHHHHHHHhcCC-ceEEEEEcCCC
Q 039831 133 --------R--VIIGKDYQFKKSILRDYLTN-KKYFIVLDDVF 164 (545)
Q Consensus 133 --------~--~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 164 (545)
. .....+.+++...+.+.++. +.-++|+|.+-
T Consensus 88 l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 88 LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0 01122346677777777754 55689999975
No 320
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.98 E-value=0.0041 Score=52.41 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccce
Q 039831 74 VAILDSSGFDKTAFAADTYNNNYVKFYFDC 103 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 103 (545)
|.|+|.+|+||||+|++++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999999 67777754
No 321
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.049 Score=52.00 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-+++||+.-. +....+.+...+.....|..||++|.+.....
T Consensus 142 ~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 200 (236)
T cd03253 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 3344556777778889999999875 23333344443332222667888888877654
No 322
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.96 E-value=0.046 Score=51.77 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=63.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE------------ecCCCCHHHH------------------HH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR------------VSLLYDFGKI------------------LE 120 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------------~~~~~~~~~~------------------~~ 120 (545)
-.+++|.|..|+|||||++.++.... ...+.+|+. +....++.+. ..
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 124 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKID 124 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46899999999999999999987321 112222221 0011111111 12
Q ss_pred HHHHHhCCCCC-ccccCCCCH-HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhH
Q 039831 121 DIIKSVMPPSR-VRVIIGKDY-QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTL 195 (545)
Q Consensus 121 ~i~~~l~~~~~-~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v 195 (545)
.++..++.... .......+. +...-.+.+.+..++-++++|+.-. +...-..+...+.. ...|..||++|.+...
T Consensus 125 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 125 EIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 22222222111 011122222 3333457777778889999999865 11111122222221 1235679999998775
Q ss_pred Hh
Q 039831 196 LT 197 (545)
Q Consensus 196 ~~ 197 (545)
+.
T Consensus 205 ~~ 206 (224)
T cd03220 205 IK 206 (224)
T ss_pred HH
Confidence 54
No 323
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0026 Score=35.90 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=8.6
Q ss_pred CCEEEccCCCCCccChhh
Q 039831 375 LKYLKLNIPSLKCLPSLL 392 (545)
Q Consensus 375 L~~L~l~~~~i~~lp~~i 392 (545)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444455554444444443
No 324
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.92 E-value=0.07 Score=50.51 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 142 FKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 142 ~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
...-.+.+.+..++-++++|+--. +....+.+...+.. ...|..||++|.+...+.
T Consensus 119 ~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~ 177 (223)
T TIGR03771 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177 (223)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 334466777778889999999865 12333333333322 124778899998877544
No 325
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.92 E-value=0.041 Score=50.87 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=62.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---------------ecCCCC---HHHHHHHHHHHhCCCCCc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR---------------VSLLYD---FGKILEDIIKSVMPPSRV 132 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------~~~~~~---~~~~~~~i~~~l~~~~~~ 132 (545)
-.+++|.|..|.|||||.+.++.-.. .....+.+++. +.+.+. ...+...+.......
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--- 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence 46899999999999999999987320 02223333221 111110 011111111100000
Q ss_pred cccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChh
Q 039831 133 RVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPT 194 (545)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~ 194 (545)
.-...+...-.+...+..++-++++|+.-. +....+.+...+.. ...|..||++|.+..
T Consensus 111 ---~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 ---GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 112233344566777777888999999865 23333444443332 223777888888864
No 326
>PRK06762 hypothetical protein; Provisional
Probab=95.92 E-value=0.006 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|.|.|++|+||||+|+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999998
No 327
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.92 E-value=0.01 Score=55.76 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999988874
No 328
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.92 E-value=0.047 Score=52.75 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=64.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-ccc--cc---eeEEEEecCCC------CHH-----------HHHHHHHHHhC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KFY--FD---CLAWVRVSLLY------DFG-----------KILEDIIKSVM 127 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~~~~~------~~~-----------~~~~~i~~~l~ 127 (545)
-.+++|+|..|+|||||++.++.-... .+. ++ .+.++.-.... +.. +-...++..++
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 109 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ 109 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcC
Confidence 468999999999999999999873211 111 11 12222211000 111 11223333333
Q ss_pred CCCC-ccccC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 128 PPSR-VRVII-GKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 128 ~~~~-~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
.... ..... -+..+...-.+...+..++-++++|+.-. +...-..+...+.. ...|..||++|.+...+.
T Consensus 110 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVM 185 (251)
T ss_pred ChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 3211 00111 12223444556667777888999999865 12222333333321 112667888888877654
No 329
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.91 E-value=0.11 Score=52.62 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=33.8
Q ss_pred cEEEEEEcCCCChHHH-HHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHhCCC
Q 039831 71 LSVVAILDSSGFDKTA-FAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPP 129 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 129 (545)
-+||.+||+.|+|||| ||+.++.-..... =..+..|+...- ....+-++.-+.-++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 6899999999999997 8877776211122 234556654432 22333344444444444
No 330
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.00069 Score=63.91 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCccc--Hhhhcccccceee
Q 039831 348 RFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP--EDIWMMQKLMHLN 425 (545)
Q Consensus 348 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~ 425 (545)
.+.+.+.|++.||.++.+ .-...|+.|+.|.|+-|+|++|- .+..+++|+.|+|+.|.|..+. .-+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 366778888999998753 22347899999999999999884 5788899999999999887776 4577888899888
Q ss_pred ecCcc----CCC-----CcccCcCCcccccccccccc
Q 039831 426 FGSIT----LPA-----PPKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 426 l~~~~----lp~-----~~~~~~~~l~~L~~L~~~~~ 453 (545)
+..|. -+. .+ .-|++|+.|+-..+
T Consensus 95 L~ENPCc~~ag~nYR~~VL----R~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVL----RVLPNLKKLDNVPV 127 (388)
T ss_pred hccCCcccccchhHHHHHH----HHcccchhccCccc
Confidence 86441 111 13 55677777765555
No 331
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.91 E-value=0.028 Score=57.33 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-ccc
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-RVI 135 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~ 135 (545)
+.++-+.|..+=..-.++.|.|.+|+|||||+.+++. .....-..++||+.... ..++ +.-+..++..... .-.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~ 142 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLL 142 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEE
Confidence 3445554533222357999999999999999998887 33333345778875433 2332 2223445432220 001
Q ss_pred CCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 136 IGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 136 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
...+.+++.+.+.+ .+.-++|+|.+..
T Consensus 143 ~e~~le~I~~~i~~---~~~~lVVIDSIq~ 169 (372)
T cd01121 143 AETNLEDILASIEE---LKPDLVIIDSIQT 169 (372)
T ss_pred ccCcHHHHHHHHHh---cCCcEEEEcchHH
Confidence 22344555544432 3667899999854
No 332
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.041 Score=61.24 Aligned_cols=115 Identities=11% Similarity=0.181 Sum_probs=70.8
Q ss_pred ceeeecccHHHHHHHHHcCC------CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGP------SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDI 122 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 122 (545)
.++|-++.+..|.+.+.... ...-+..+.|+.|+|||.||++++. -+-+..+.-+-|+ +.+...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriD------mse~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLD------MSEFQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEec------hhhhhh--
Confidence 67888888888888886431 2466788899999999999999988 4433333333333 333333
Q ss_pred HHHhCCCCCccccCCCCHHHHHHHHHHhcCCceE-EEEEcCCCC-ChhhHHHHHhhCC
Q 039831 123 IKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKY-FIVLDDVFH-YSEMWSDVVELLP 178 (545)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~-~~~~~~~l~~~~~ 178 (545)
..++.+..+ ++.. .+.-.+|.+.+++++| .|.||||.. +......+...+.
T Consensus 633 vskligsp~--gyvG---~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPP--GYVG---KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCc--cccc---chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 333322221 1222 2223467777888765 777899987 3445555555554
No 333
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.88 E-value=0.061 Score=50.86 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 144 KSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
.-.+...+-..+-++++|+.-. +....+.+...+.. ...|..||++|.+...+.
T Consensus 132 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 132 RLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3456667777888999999865 22333333333322 123667999999987665
No 334
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.053 Score=50.66 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=39.6
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++-|.+-..++|.+...-. =+..+=|..+|++|.|||.||++|+| .....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~--~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN--HTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhh--ccchhe
Confidence 7788999999988876432 13566788999999999999999999 444444
No 335
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.87 E-value=0.014 Score=60.71 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=57.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHhCCCCCc--cccCCCCH------H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPPSRV--RVIIGKDY------Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------~ 141 (545)
-+-++|.|.+|+|||||+.++.+... +.+-+.++++-++.. ....++...+...=...... -...+.+. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35689999999999999988887322 224467777777643 45666666665432211110 00011111 2
Q ss_pred HHHHHHHHhc---CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL---TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l---~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++.+|+++|++-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 3345566776 37899999999943
No 336
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.87 E-value=0.013 Score=53.59 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|.|.+|+||||+|+.++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 337
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.87 E-value=0.073 Score=49.20 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-.+++|+|..|+|||||++.++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 338
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.86 E-value=0.058 Score=52.19 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-.+++|+|..|+|||||.+.++.-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 339
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.86 E-value=0.011 Score=50.70 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 55 RGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 55 ~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
++.+++.+.|...=..-.+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455555555442223458999999999999999999984
No 340
>PRK03839 putative kinase; Provisional
Probab=95.84 E-value=0.0061 Score=55.65 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999
No 341
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.82 E-value=0.063 Score=49.92 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-cc--------------cc-ceeEEEEec----CCCCH------------HHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KF--------------YF-DCLAWVRVS----LLYDF------------GKI 118 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~--------------~F-~~~~wv~~~----~~~~~------------~~~ 118 (545)
-.+++|+|..|+|||||.+.++.-... .+ .+ ..+.++.-. ...++ .+-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQ 105 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHH
Confidence 468999999999999999999863211 00 01 012222100 00111 112
Q ss_pred HHHHHHHhCCCCC-cc-ccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCCh
Q 039831 119 LEDIIKSVMPPSR-VR-VIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEP 193 (545)
Q Consensus 119 ~~~i~~~l~~~~~-~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~ 193 (545)
...++..++.... .. ...-...+...-.+.+.+..++=++++|+.-. +....+.+...+.. ...|..||++|.+.
T Consensus 106 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 106 VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred HHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 2333344433211 00 01112224444556777777888999999865 23333334333321 12366788888865
Q ss_pred h
Q 039831 194 T 194 (545)
Q Consensus 194 ~ 194 (545)
.
T Consensus 186 ~ 186 (201)
T cd03231 186 L 186 (201)
T ss_pred h
Confidence 4
No 342
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.82 E-value=0.025 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.057 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|.|+|.+|+||||+|++++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999998
No 343
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.024 Score=53.15 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-++++|+--. +...-+.+...+.....+..||++|.+...+.
T Consensus 135 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~ 193 (211)
T cd03264 135 MRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 3444556677778888999999755 12222333333322112356888888877554
No 344
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.81 E-value=0.062 Score=51.38 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 143 KKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 143 ~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
..-.+...+..++-++++|+... +....+.+...+.....|..||++|.+...+.
T Consensus 146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 33446666777788999999865 22333333333322124677888888876544
No 345
>PRK05439 pantothenate kinase; Provisional
Probab=95.81 E-value=0.05 Score=53.76 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=45.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHH
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSI 146 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 146 (545)
...-+|||.|.+|+||||+|+.+.. ...... ..+.-|+..+-+...+.+.. ..+..... ..+..+.+.+.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg--~Pes~D~~~l~~~ 157 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKG--FPESYDMRALLRF 157 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCC--CcccccHHHHHHH
Confidence 4578999999999999999998877 443221 23444554444333332221 11111000 1234566667766
Q ss_pred HHHhcCCce
Q 039831 147 LRDYLTNKK 155 (545)
Q Consensus 147 l~~~l~~k~ 155 (545)
|.....++.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 666666654
No 346
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.022 Score=60.70 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=44.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc-ccceeEEEEecCC--CCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKF-YFDCLAWVRVSLL--YDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSI 146 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 146 (545)
..+-|.|.|..|+|||+||+++++ .+.. ..-.+.+|+++.- ...+.+++. +...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~--~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~---------------------l~~v 486 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFD--YYSKDLIAHVEIVSCSTLDGSSLEKIQKF---------------------LNNV 486 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHH--HhccccceEEEEEechhccchhHHHHHHH---------------------HHHH
Confidence 345688999999999999999999 4432 2222334443321 122333322 2234
Q ss_pred HHHhcCCceEEEEEcCCC
Q 039831 147 LRDYLTNKKYFIVLDDVF 164 (545)
Q Consensus 147 l~~~l~~k~~LlVlDdv~ 164 (545)
+.+.+...+-+|||||+.
T Consensus 487 fse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHHHhhCCcEEEEcchh
Confidence 445556789999999995
No 347
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.79 E-value=0.095 Score=51.20 Aligned_cols=52 Identities=8% Similarity=0.032 Sum_probs=34.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc-cceeEEEEecCCCCHHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFY-FDCLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
-.++.|.|.+|+||||+|.+++.. .... =..++|++.... ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 458889999999999999988763 3222 235778876553 345555554443
No 348
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.1 Score=52.69 Aligned_cols=90 Identities=8% Similarity=0.024 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC-CHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY-DFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
+.++++++|+.|+||||++..++.. ....-..+.+|+..... ...+-++.....++.+-. ...+..++.+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI----VATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHHHHH
Confidence 4689999999999999999888763 32221345566654322 223344444554443221 2345566655554
Q ss_pred Hhc-CCceEEEEEcCCCC
Q 039831 149 DYL-TNKKYFIVLDDVFH 165 (545)
Q Consensus 149 ~~l-~~k~~LlVlDdv~~ 165 (545)
..- .+..=+|++|-...
T Consensus 279 ~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHhcCCCCEEEEECCCC
Confidence 432 13446777787754
No 349
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.12 Score=48.97 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|...+..++-+++||+... +....+.+...+.....|..||++|.+.....
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 202 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 3334456667777888999999865 22223333333322123667888888876544
No 350
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.76 E-value=0.022 Score=58.76 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=52.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCCH------H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKDY------Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~~------~ 141 (545)
-..++|+|..|+|||||++.+++. .. -+.++++-++.. ....++....+..-+.... .....+.+. .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~--~~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARN--AD--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--cC--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 467899999999999999999983 22 134555656543 3455555544433221111 000111111 2
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++.+|+++||+-.
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 2234455555 47899999999854
No 351
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.75 E-value=0.091 Score=48.65 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 039831 73 VVAILDSSGFDKTAFAADTY 92 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~ 92 (545)
+++|+|..|+|||||+++++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999986
No 352
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.75 E-value=0.092 Score=50.18 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=33.1
Q ss_pred HHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 144 KSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
.-.+...+..++-++++|+... +....+.+...+.....|..||++|.+...+.
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 3445666667788999999865 22333333333322123677999998887654
No 353
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.74 E-value=0.028 Score=55.14 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=44.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccc-c-eeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHH
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF-D-CLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSI 146 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 146 (545)
....+|||.|..|+||||+|+.+.. ...... . .+..++...-....+.... .+........+..+.+.+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHH
Confidence 4578999999999999999987755 332211 1 2445554443333333222 111111111244566777777
Q ss_pred HHHhcCCc
Q 039831 147 LRDYLTNK 154 (545)
Q Consensus 147 l~~~l~~k 154 (545)
+...-.++
T Consensus 134 L~~Lk~g~ 141 (290)
T TIGR00554 134 LSDLKSGK 141 (290)
T ss_pred HHHHHCCC
Confidence 66665554
No 354
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.012 Score=51.34 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=31.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCC
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPP 129 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 129 (545)
+|.|.|.+|+||||+|+.++++..++ | | +.-.++++|+...+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999943332 1 1 2335677777776554
No 355
>PRK06217 hypothetical protein; Validated
Probab=95.74 E-value=0.02 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 039831 73 VVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.|.|.|.+|+||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 356
>PTZ00035 Rad51 protein; Provisional
Probab=95.74 E-value=0.081 Score=53.30 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc---c-ccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVK---F-YFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR- 131 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 131 (545)
...+-++|..+=..-.++.|+|.+|+|||+|+..++-..+.. . .=..++||+-...+..+++ .+++..++....
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~ 182 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPED 182 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHh
Confidence 344444554332346789999999999999998886532321 1 1134679988777777664 445555543321
Q ss_pred ----ccccCCCCHHHHHHHH---HHhcC-CceEEEEEcCCCC
Q 039831 132 ----VRVIIGKDYQFKKSIL---RDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 132 ----~~~~~~~~~~~~~~~l---~~~l~-~k~~LlVlDdv~~ 165 (545)
-.-....+.++..+.+ ...+. .+--|||+|-+..
T Consensus 183 ~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 183 VLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0001223334443333 22332 3556899998854
No 357
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.72 E-value=0.099 Score=50.64 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=65.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-ccc--cc---------eeEEEEecCC----CCHH------------HHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KFY--FD---------CLAWVRVSLL----YDFG------------KILEDI 122 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---------~~~wv~~~~~----~~~~------------~~~~~i 122 (545)
-.+++|+|..|+|||||.+.++.-... .+. |+ .+.|+.-... .++. .-...+
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 117 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA 117 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence 368999999999999999999873211 111 11 1223321100 1111 112333
Q ss_pred HHHhCCCCC-ccc-cCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHH
Q 039831 123 IKSVMPPSR-VRV-IIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLL 196 (545)
Q Consensus 123 ~~~l~~~~~-~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~ 196 (545)
+..++.... ... ..-+..+...-.+...+...+-+++||..-. +......+...+.. ...|..||++|.+...+
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 444433221 011 1122223334556667777788999999865 12223333333321 12366789999887755
Q ss_pred h
Q 039831 197 T 197 (545)
Q Consensus 197 ~ 197 (545)
.
T Consensus 198 ~ 198 (257)
T PRK11247 198 V 198 (257)
T ss_pred H
Confidence 4
No 358
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.072 Score=55.12 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=34.6
Q ss_pred ceeeeccc---HHHHHHHHHcCC-------CCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERG---REKFFDLLIEGP-------SGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~---~~~i~~~L~~~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
++-|.|+. +++|+++|.+.. +=.+=|.++|++|.|||-||++|+-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 67787664 566777776542 22455779999999999999999994
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.72 E-value=0.08 Score=56.43 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccceeEEEE-------ecCCCCH-------------------HHHHHHHHHHhC
Q 039831 74 VAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR-------VSLLYDF-------------------GKILEDIIKSVM 127 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------~~~~~~~-------------------~~~~~~i~~~l~ 127 (545)
|+|+|+.|+|||||.+.+.. ..... .+.+.+. +.|..+. ..-.+..+.+++
T Consensus 351 iaiiG~NG~GKSTLlk~l~g--~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAG--ELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred EEEECCCCCCHHHHHHHHhh--hcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Q ss_pred CCCC---ccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 128 PPSR---VRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 128 ~~~~---~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
.... ..-..-+.-+...-.+...+-.++-++|||.--+ +.+..+.+..++.... |+ ||++|.++....
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~ 500 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLD 500 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHH
No 360
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.72 E-value=0.047 Score=50.87 Aligned_cols=52 Identities=12% Similarity=0.252 Sum_probs=33.0
Q ss_pred HHHHhcCCceEEEEEcCCCC--ChhhHH-HHHhhCCCC-CC-CcEEEEecCChhHHh
Q 039831 146 ILRDYLTNKKYFIVLDDVFH--YSEMWS-DVVELLPDD-QN-GSRVLILVTEPTLLT 197 (545)
Q Consensus 146 ~l~~~l~~k~~LlVlDdv~~--~~~~~~-~l~~~~~~~-~~-gs~iivTtR~~~v~~ 197 (545)
.+.+.+..++-++++|+.-. +....+ .+...+... .. |..||++|.+.....
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 46677778889999999875 122333 444444322 22 567899998877554
No 361
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.067 Score=50.97 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-+++||..-. +...-..+...+.. ...|..||++|.+.+.+.
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~ 205 (233)
T cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK 205 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3344556666777788999999865 12222333333332 123677999998877654
No 362
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.71 E-value=0.11 Score=54.06 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999877776
No 363
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.71 E-value=0.014 Score=57.90 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=36.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.+++.+.|.||+||||+|.+.+- ........++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 57899999999999999988665 34333345777877777777766543
No 364
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.71 E-value=0.035 Score=51.92 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=73.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-c------------------ccc--ceeEEEEecCCC----------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-K------------------FYF--DCLAWVRVSLLY---------------- 113 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~------------------~~F--~~~~wv~~~~~~---------------- 113 (545)
-..|+|+|+.|+|||||-..+.--.+- . ..| +.+.+| -|.+
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfv--FQ~~nLl~~ltv~ENv~lpl 108 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFV--FQNFNLLPDLTVLENVELPL 108 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEE--CccCCCCCCCCHHHHHHhHH
Confidence 358999999999999999887642111 0 011 111222 1111
Q ss_pred --------CHHHHHHHHHHHhCCCCC---ccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-
Q 039831 114 --------DFGKILEDIIKSVMPPSR---VRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD- 179 (545)
Q Consensus 114 --------~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~- 179 (545)
...+....++..++.... ....+-+.-++-.-.+.+.|...+-+|+-|.--. +...-+.+...+..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 109 LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 122334455555554422 1122334456666788999999999999998643 12222333333322
Q ss_pred -CCCCcEEEEecCChhHHhc
Q 039831 180 -DQNGSRVLILVTEPTLLTS 198 (545)
Q Consensus 180 -~~~gs~iivTtR~~~v~~~ 198 (545)
...|..||+.|.+..+|..
T Consensus 189 ~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 189 NKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHhcCCEEEEEcCCHHHHHh
Confidence 2347889999999999984
No 365
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.71 E-value=0.01 Score=61.76 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=36.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHH
Confidence 6899999999999988765 3577999999999999999998
No 366
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.075 Score=52.07 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-++++|+.-. +......+...+.. ...|..||++|.+.+.+.
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3344566777778889999999865 12333333333321 123677899988877654
No 367
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.69 E-value=0.068 Score=56.67 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=68.1
Q ss_pred cEEEEEEcCCCChHHH-HHHHHhcCcccccccceeEEEEecCCCCHHH--HHHHHHHHhCCCCC-----ccccCC-----
Q 039831 71 LSVVAILDSSGFDKTA-FAADTYNNNYVKFYFDCLAWVRVSLLYDFGK--ILEDIIKSVMPPSR-----VRVIIG----- 137 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~-----~~~~~~----- 137 (545)
.+||.|+|..|.|||| ||+.+|.+- |...--|.+.++..+.+ +.+.+...++..-. ...+++
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4799999999999998 999999852 22222455666655443 46666666644322 001111
Q ss_pred ------CCHHHHHHHHHHhcCCceEEEEEcCCCCChhhHHHHHhhC---CCCCCCcEEEEecCChhHHh
Q 039831 138 ------KDYQFKKSILRDYLTNKKYFIVLDDVFHYSEMWSDVVELL---PDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 138 ------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~~---~~~~~gs~iivTtR~~~v~~ 197 (545)
.+.--+.+.|....-+|=-.||+|..-+..-..+.+...+ ......-|+||||-.-+...
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~k 514 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQK 514 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHH
Confidence 1122334444444445556889999865111122222222 12334789999986655433
No 368
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.099 Score=49.83 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-+++||+.-. +....+.+...+.....|..||++|.+.....
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 201 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIE 201 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 3444556667777788999999865 22333333333322223667999998876554
No 369
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.017 Score=60.56 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=70.4
Q ss_pred ceeeecccHHHHHHHHHcC----C-------CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHH
Q 039831 49 DISEFERGREKFFDLLIEG----P-------SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGK 117 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~----~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 117 (545)
++-|.++...++...+... + ....=|..||++|+|||-||++|+| +.+-.| ++|...-
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGPE---- 580 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGPE---- 580 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCHH----
Confidence 5555666666666555432 1 1234467999999999999999999 555555 4444431
Q ss_pred HHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCC------h------hhHHHHHhhCCC--CCCC
Q 039831 118 ILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHY------S------EMWSDVVELLPD--DQNG 183 (545)
Q Consensus 118 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~------~~~~~l~~~~~~--~~~g 183 (545)
++...- ..++..+....++.=...++.|.||.++.. . ....++..-+.. ...|
T Consensus 581 ----LlNkYV---------GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 581 ----LLNKYV---------GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred ----HHHHHh---------hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence 111111 122233333444444457999999999640 1 123344444442 2346
Q ss_pred cEEEEecCChhHHh
Q 039831 184 SRVLILVTEPTLLT 197 (545)
Q Consensus 184 s~iivTtR~~~v~~ 197 (545)
.-||-.|.-+++-.
T Consensus 648 V~viaATNRPDiID 661 (802)
T KOG0733|consen 648 VYVIAATNRPDIID 661 (802)
T ss_pred eEEEeecCCCcccc
Confidence 66666666665544
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.69 E-value=0.032 Score=57.52 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 371
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.68 E-value=0.036 Score=53.98 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCcc---ccCCCCHHHHHH
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVR---VIIGKDYQFKKS 145 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~ 145 (545)
.+..+|.|.|.+|+|||||...+.+ ..+..... +.+. .+..+..+. ..+...+.+.... ..--.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~-~VI~-gD~~t~~Da--~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPC-AVIE-GDQQTVNDA--ARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCE-EEEC-CCcCcHHHH--HHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4689999999999999999999998 55444432 2222 111222221 1223332221100 001123344555
Q ss_pred HHHHhcCCceEEEEEcCCCC
Q 039831 146 ILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 146 ~l~~~l~~k~~LlVlDdv~~ 165 (545)
.+...-....-++|+++|.+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55555444556789999875
No 372
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.041 Score=50.78 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcc---cccc--cc----------eeEEEEecCC-CCHHHHHHHHHHHhCCCCCccc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNY---VKFY--FD----------CLAWVRVSLL-YDFGKILEDIIKSVMPPSRVRV 134 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~--F~----------~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~ 134 (545)
-.+++|+|..|+|||||++.++.... .... |+ .+.|+.-... +....+...+.......
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----- 107 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR----- 107 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh-----
Confidence 46899999999999999999996311 1111 11 1122221111 11011122221100000
Q ss_pred cCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChh
Q 039831 135 IIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPT 194 (545)
Q Consensus 135 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~ 194 (545)
.-...+...-.+.+.+..++-++++|+.-. +......+...+.. ...|..||++|.+.+
T Consensus 108 -~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 108 -GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred -cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 112223344456677777888999999765 12222333332221 123677888888765
No 373
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.66 E-value=0.054 Score=51.82 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHH
Q 039831 59 KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 59 ~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
.+-++|..+=..-.++.|.|.+|+|||++|.++... ..+ .=..++||+... +..++.+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~~-~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQ-MGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HHH-cCCcEEEEEeeC--CHHHHHHH
Confidence 334444333234679999999999999999876541 222 234678888654 44444444
No 374
>PRK00625 shikimate kinase; Provisional
Probab=95.66 E-value=0.0077 Score=54.46 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
|.++||+|+||||+|+.+.+
T Consensus 3 I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999988
No 375
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.66 E-value=0.021 Score=59.33 Aligned_cols=93 Identities=12% Similarity=0.210 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEecC-CCCHHHHHHHHHHHhCCCCC--ccccCCC-CH-----
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DCLAWVRVSL-LYDFGKILEDIIKSVMPPSR--VRVIIGK-DY----- 140 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~--~~~~~~~-~~----- 140 (545)
-+-++|.|.+|+|||||+.++... ..... +.++++-++. ...+.+++..+...=..... .-...+. ..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999887663 22111 3466676654 44566777766653221111 0000111 11
Q ss_pred HHHHHHHHHhc---CCceEEEEEcCCCC
Q 039831 141 QFKKSILRDYL---TNKKYFIVLDDVFH 165 (545)
Q Consensus 141 ~~~~~~l~~~l---~~k~~LlVlDdv~~ 165 (545)
......+.+++ +++.+|+++|++-.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 23345567777 57899999999844
No 376
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.66 E-value=0.0089 Score=54.82 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 377
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.034 Score=58.51 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.-++|+|+|.+|+||||++..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 378
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.65 E-value=0.071 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999988
No 379
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.64 E-value=0.095 Score=55.42 Aligned_cols=124 Identities=7% Similarity=0.019 Sum_probs=65.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE-------Ee----cCCCCHHHH------------------HHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWV-------RV----SLLYDFGKI------------------LED 121 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~----~~~~~~~~~------------------~~~ 121 (545)
-.+++|+|..|+|||||++.++.-.. ...+.+++ .. ....++.+- ...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 46899999999999999999987321 11222222 11 111122111 112
Q ss_pred HHHHhCCCCC-ccccCCCCH-HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 039831 122 IIKSVMPPSR-VRVIIGKDY-QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLL 196 (545)
Q Consensus 122 i~~~l~~~~~-~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~ 196 (545)
++..++.... .......+. +...-.+...+...+-+++||..-. +......+...+.. ...|..||++|.+...+
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 2333322211 111122222 3333456777778888999999765 12222233333221 23467799999987765
Q ss_pred h
Q 039831 197 T 197 (545)
Q Consensus 197 ~ 197 (545)
.
T Consensus 207 ~ 207 (549)
T PRK13545 207 K 207 (549)
T ss_pred H
Confidence 5
No 380
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.63 E-value=0.028 Score=57.38 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=47.3
Q ss_pred ceeeecccHHHHHHHHHcC------------CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEe-cCC
Q 039831 49 DISEFERGREKFFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF---DCLAWVRV-SLL 112 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~-~~~ 112 (545)
.++|.++.++.+.-.+... ....+-|.++|++|+|||++|++++. .....| +..-++.. ...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCccc
Confidence 5788888888876666431 11246788999999999999999998 555444 32222221 122
Q ss_pred CCHHHHHHHHHHH
Q 039831 113 YDFGKILEDIIKS 125 (545)
Q Consensus 113 ~~~~~~~~~i~~~ 125 (545)
.+.+++++.+...
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 3555555555444
No 381
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.63 E-value=0.12 Score=50.04 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|.+.+..++-+++||+.-. +...-..+...+.. ...|..||++|.+...+.
T Consensus 145 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~ 205 (254)
T PRK10418 145 MLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVA 205 (254)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 4444566777778888999999865 12221222222221 123667888888876554
No 382
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.63 E-value=0.031 Score=59.90 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=38.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|....++++.+.+..-...-.-|.|+|..|+|||++|+++++.
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 6999999999998888664333456789999999999999999984
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.62 E-value=0.0085 Score=54.62 Aligned_cols=21 Identities=48% Similarity=0.526 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 384
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.62 E-value=0.11 Score=49.93 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-++++|+.-. +....+.+...+.....+..||++|.+...+.
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 4444556677777788999999865 22222333333322112457899998877655
No 385
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.61 E-value=0.014 Score=56.72 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=17.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+.|.|+|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 5788999999999999999988
No 386
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.60 E-value=0.038 Score=58.34 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=32.2
Q ss_pred ceeeecccHHHHHHHHH---c-----CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLI---E-----GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.|.+..++.+..... . +-...+-|.++|++|.|||.+|+++++
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 77887766666554321 1 112345688999999999999999999
No 387
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.59 E-value=0.11 Score=48.38 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=63.5
Q ss_pred ceeeecccHHHHHHHHHc--CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIE--GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|.+...+.+.+--.. .+....-|.+||.-|.||+.|++++.+ .+.+..-. -|.|.+.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-------------- 122 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-------------- 122 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------------
Confidence 899998888877654321 122344578999999999999999999 56555433 3332221
Q ss_pred CCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD 179 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~ 179 (545)
+..+...+.+.|+. ..+||.|..||..- .......++..+..
T Consensus 123 ---------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 ---------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ---------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 01111112222221 25799999999964 24667778777764
No 388
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.58 E-value=0.033 Score=62.44 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=40.8
Q ss_pred ceeeecccHHHHHHHHHc----CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
+.+|.++.+++|.++|.. +.....++.++|++|+||||+|+.++. .....|
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 689999999999998863 122456899999999999999999998 444443
No 389
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.57 E-value=0.028 Score=60.14 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRD 149 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 149 (545)
.-++..++|++|+||||||..|+++..+ .++=|..|+..+...+-..|...+.....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~------------------ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSV------------------ 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhccc------------------
Confidence 3578999999999999999999984322 24556777777777766666665544322
Q ss_pred hc--CCceEEEEEcCCCC
Q 039831 150 YL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 150 ~l--~~k~~LlVlDdv~~ 165 (545)
+ .+++.-||+|.++.
T Consensus 382 -l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 -LDADSRPVCLVIDEIDG 398 (877)
T ss_pred -cccCCCcceEEEecccC
Confidence 2 15777889999987
No 390
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.57 E-value=0.015 Score=50.59 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=27.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEecC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVK-FYFDCLAWVRVSL 111 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~ 111 (545)
++|+|+|..|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4899999999999999999999 554 4455555666544
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.56 E-value=0.059 Score=50.68 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
|.|.|++|+||||+|+.++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999987
No 392
>PRK05922 type III secretion system ATPase; Validated
Probab=95.56 E-value=0.043 Score=56.61 Aligned_cols=91 Identities=7% Similarity=0.101 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC-CCCHHHHHHHHHHHhCCCCCc--cccCCCCH------H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL-LYDFGKILEDIIKSVMPPSRV--RVIIGKDY------Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~------~ 141 (545)
-..++|.|..|+|||||.+.+.+. .. -+...++-++. .....+.+.+........... ....+.+. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~--~~--~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKG--SK--STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhcc--CC--CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999973 22 12333333332 333445555544333222210 00011111 2
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++++|+++||+-.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2234456666 47899999999854
No 393
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.12 Score=47.94 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHhc
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLTS 198 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~~ 198 (545)
+.....|.+.+-=++-+.|||..++ +.+....+...+.. ...|+-+|+.|..+.++.+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~ 209 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDY 209 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhh
Confidence 4445556666666778999999987 23334333333321 2347779999999988884
No 394
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.02 Score=52.45 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=31.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDI 122 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 122 (545)
..+|+|-||=|+||||||+++++ +.+ |. .+.-.+.+++=++....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~--~l~--~~-~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE--HLG--FK-VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH--HhC--Cc-eeeecccCChHHHHHHHhH
Confidence 46899999999999999999999 443 21 2333345554444444443
No 395
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.54 E-value=0.05 Score=54.29 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+++++|++|+||||++..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999988887
No 396
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.54 E-value=0.0078 Score=55.85 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 397
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.53 E-value=0.094 Score=53.27 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=46.5
Q ss_pred HHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCH--HHHHHHHHHHhC
Q 039831 57 REKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDF--GKILEDIIKSVM 127 (545)
Q Consensus 57 ~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~ 127 (545)
.+++.++|-.+ ...+.||..+|.-|.||||-|-.+++ .++. +...+-+-..+.+.. -+-++.+..+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 35566666531 13578999999999999999988887 5555 333343333444443 344777888877
Q ss_pred CCCC
Q 039831 128 PPSR 131 (545)
Q Consensus 128 ~~~~ 131 (545)
.+-.
T Consensus 156 v~~f 159 (451)
T COG0541 156 VPFF 159 (451)
T ss_pred Ccee
Confidence 6544
No 398
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.53 E-value=0.046 Score=54.42 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEec-CCCCHHHHHHHHHHHhCCCCC---ccccCCCCH-----H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVS-LLYDFGKILEDIIKSVMPPSR---VRVIIGKDY-----Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-----~ 141 (545)
-..++|+|..|+|||||.+.+.+. ... +..+..-+. +..++.++.......-..... ....+.... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999999999983 221 233333333 344556655555443221111 000111111 2
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
...-.+.+++ ++|.+|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 2233445555 47899999999854
No 399
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.52 E-value=0.05 Score=56.14 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC---ccccCCCCH-----HH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR---VRVIIGKDY-----QF 142 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-----~~ 142 (545)
-..++|.|..|+|||||++.+... .+. ...++...-.+...+.++....+..-+.... ....+.... ..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~--~~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN--TDA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 367899999999999999999873 322 2222222223344455555544333221111 000111111 12
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCC
Q 039831 143 KKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 143 ~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
....+.+++ +++.+|+++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 233456666 47899999999854
No 400
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.52 E-value=0.0062 Score=57.48 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=132.3
Q ss_pred CCeeEEEEEccCCCCCC--------CcCCCCceeEEEecCCCCCCCC-------CCcchhhhcCCCcccEEEccCCCCC-
Q 039831 300 ANFKRCIILGNQFDFFP--------LEYSYMYLQSFLNHSSKSNHLN-------PKDCEIFFKRFKYLRVLNMGSAVLD- 363 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~--------~~~~~~~lr~L~~~~~~~~~~~-------~~~~~~~~~~l~~L~~L~L~~~~l~- 363 (545)
..+..+.+++|.+.... ..-. +|+...+.+...+... ..+. +.+-+++.|+..+||.|.+.
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~--~L~vvnfsd~ftgr~kde~~~~L~~Ll-~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVR--NLRVVNFSDAFTGRDKDELYSNLVMLL-KALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhc--ceeEeehhhhhhcccHHHHHHHHHHHH-HHHhcCCcceeeeccccccCc
Confidence 45677778877765322 2233 4555444433322110 1122 56778999999999999976
Q ss_pred CCCc----cccCCCCCCEEEccCCCCCccC--------------hhhhccccCcEEecCCCCCCcccHhhh-----cccc
Q 039831 364 QFPP----GLENLYLLKYLKLNIPSLKCLP--------------SLLCTLLNLETLEMPSSHIDQSPEDIW-----MMQK 420 (545)
Q Consensus 364 ~lp~----~i~~L~~L~~L~l~~~~i~~lp--------------~~i~~L~~L~~L~l~~~~l~~lp~~~~-----~L~~ 420 (545)
..|+ .|++-+.|.+|.+++|.+..+- ..+.+-+.|++.....|++...|...+ .=.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 4554 4566788999999999876442 123345679999998887777764322 2247
Q ss_pred cceeeecCccC-CCCccc--C--cCCccccccccccccCCC------chhhcCCCCCCCEEEEeccc--CccccchhHhc
Q 039831 421 LMHLNFGSITL-PAPPKN--Y--SSSLKNLIFTSALNPSSC------TLDILFRLPSVRTLRISGDL--SYYQSGVSKSL 487 (545)
Q Consensus 421 L~~L~l~~~~l-p~~~~~--~--~~~l~~L~~L~~~~~~~~------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l 487 (545)
|+.+.+..|.+ |.++.- | +..+.+|+.|++-++.-. .-..+..-+.|+.|.+.+|- .....++...+
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88888876644 433200 0 034566666665555111 11223444567888888775 12233333333
Q ss_pred cC--CCCCcEEEeecCCCC--Ceee--cc-C-CCCCCCccEEEEeccCCchh
Q 039831 488 CE--LHKLECLKLVNESKP--SRMV--LS-E-YQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 488 ~~--l~~L~~L~L~~~~~~--~~L~--lP-~-l~~l~~L~~L~L~~~~l~~~ 531 (545)
.. .++|..|-..++-.. -.+. +| . -..+|-|..|.+.+|.++++
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 33 256666666641000 1111 14 2 23488889999999998875
No 401
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.50 E-value=0.076 Score=57.41 Aligned_cols=25 Identities=28% Similarity=0.112 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.-..++|+|..|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999763
No 402
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.50 E-value=0.054 Score=56.48 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=53.3
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCcccc-----cccceeEEEEecCCCC-HHHHHHHHHHHhCCCCC----ccccCCCC
Q 039831 71 LSVVAILDSSGFDKTAFA-ADTYNNNYVK-----FYFDCLAWVRVSLLYD-FGKILEDIIKSVMPPSR----VRVIIGKD 139 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~ 139 (545)
-+-++|.|-.|+|||+|| ..+.|...+. ++-+.++++-+++... +.+ +.+.+.+-+.-.. ....+...
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCH
Confidence 356889999999999997 6667743221 2335678888887654 344 3343443331111 00011111
Q ss_pred HH-----HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 140 YQ-----FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 140 ~~-----~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.. -..-.+.+++ +++.+|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 1223344444 47899999999954
No 403
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.028 Score=50.98 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=48.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccce--eEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFYFDC--LAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
.|.|.|.+|+||||+|+.+.+...+- |.+. ..|-.+..........+.+ +.... -.+.+-....+..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~-hlstgd~~r~~~~~~t~lg~~~k~~---i~~g~------lv~d~i~~~~v~~r 71 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP-HLDTGDILRAAIAERTELGEEIKKY---IDKGE------LVPDEIVNGLVKER 71 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc-EEcHhHHhHhhhccCChHHHHHHHH---HHcCC------ccchHHHHHHHHHH
Confidence 36799999999999999999842221 2221 1111122222222222222 22211 11222223344444
Q ss_pred cCC--ceEEEEEcCCCCChhhHHHHHhhCC
Q 039831 151 LTN--KKYFIVLDDVFHYSEMWSDVVELLP 178 (545)
Q Consensus 151 l~~--k~~LlVlDdv~~~~~~~~~l~~~~~ 178 (545)
+.. .+.-+|+|+.-....++..+...+.
T Consensus 72 l~~~d~~~~~I~dg~PR~~~qa~~l~r~l~ 101 (178)
T COG0563 72 LDEADCKAGFILDGFPRTLCQARALKRLLK 101 (178)
T ss_pred HHhhcccCeEEEeCCCCcHHHHHHHHHHHH
Confidence 432 2228899998663566666665544
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.49 E-value=0.063 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++++|.|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988875
No 405
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.48 E-value=0.15 Score=56.47 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|...|-.++-+++||.--+ +...-+.+...+.... + .||++|.+...+.
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~ 217 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIR 217 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHH
Confidence 4445566777777888999999866 1222233333333222 3 6899999988665
No 406
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.47 E-value=0.025 Score=54.60 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|.++|++|+||||+|+++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999987
No 407
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.47 E-value=0.019 Score=59.40 Aligned_cols=94 Identities=9% Similarity=0.156 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCCH------H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKDY------Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~~------~ 141 (545)
-+-++|.|.+|+|||+|+.++.+... +.+-+.++|+-++.. ....++.+.+...=..... --...+.+. .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35689999999999999988877422 223367888888654 4456666665543211111 000011111 2
Q ss_pred HHHHHHHHhcC---CceEEEEEcCCCC
Q 039831 142 FKKSILRDYLT---NKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l~---~k~~LlVlDdv~~ 165 (545)
.....+.++++ ++.+|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 33455677764 5899999999854
No 408
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.11 Score=49.48 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCC--CCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDD--QNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~--~~gs~iivTtR~~~v~~ 197 (545)
+...-.+.+.+..++=+++||+.-. +....+.+...+... ..|..||++|.+.....
T Consensus 135 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~ 195 (232)
T cd03300 135 QQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEAL 195 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3444556777778888999999865 233334444433321 22678899988877544
No 409
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.16 Score=50.09 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|...+..++-+++||..-. +......+...+.. ...|..||++|.+...+.
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~ 208 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 4445566777777888999999865 12333333333321 123678999999987654
No 410
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.14 Score=50.13 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-++++|..-. +......+...+.. ...|..||++|.+...+.
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~ 206 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVT 206 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3344556666777788999999865 22333333333321 123667999998876554
No 411
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.44 E-value=0.056 Score=52.54 Aligned_cols=127 Identities=16% Similarity=0.119 Sum_probs=68.2
Q ss_pred eeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCC
Q 039831 51 SEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPS 130 (545)
Q Consensus 51 vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 130 (545)
.|...+..+....+.... -++|.|.|..|.||||++.++.+ .+...-..++.+ .+..... +.. ..++.
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iiti--Edp~E~~--~~~-~~q~~--- 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITV--EDPVEYQ--IPG-INQVQ--- 129 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEE--CCCceec--CCC-ceEEE---
Confidence 344444433333333322 46899999999999999998876 333211122222 2222110 000 00110
Q ss_pred CccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 131 RVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
..........+.++..++..+=.++++++.+ .+....+..+. ..|-.++-|....++..
T Consensus 130 ----v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~aa---~tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 130 ----VNEKAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQAA---LTGHLVLSTLHTNDAPG 188 (264)
T ss_pred ----eCCcCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHHH---HcCCcEEEEeccCCHHH
Confidence 0111112356677778888888999999999 66544333332 23555666666666555
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.036 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++.++|++|+||||+|..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 413
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.44 E-value=0.1 Score=45.90 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.++|++|+||||+|+.+.+
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 367899999999999999988
No 414
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.43 E-value=0.015 Score=51.28 Aligned_cols=35 Identities=17% Similarity=-0.064 Sum_probs=27.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR 108 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 108 (545)
.||-|.|.+|+||||||+++.+ +....-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 5788999999999999999999 6655545556664
No 415
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.43 E-value=0.041 Score=53.09 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=54.2
Q ss_pred EEEEEEcCCCChHHHHH-HHHhcCccccccccee-EEEEecCC-CCHHHHHHHHHHHhCCCCC---ccccCCCCHH----
Q 039831 72 SVVAILDSSGFDKTAFA-ADTYNNNYVKFYFDCL-AWVRVSLL-YDFGKILEDIIKSVMPPSR---VRVIIGKDYQ---- 141 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~---- 141 (545)
+-++|.|.+|+|||+|| ..+.+ .. +-+.+ +++-+++. ....++.+.+...=..... ....+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~--~~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIIN--QK--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHH--hc--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 66666 22 22344 55666654 4456666666543211111 0001111111
Q ss_pred -HHHHHHHHhc--CCceEEEEEcCCCCChhhHHHHH
Q 039831 142 -FKKSILRDYL--TNKKYFIVLDDVFHYSEMWSDVV 174 (545)
Q Consensus 142 -~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~l~ 174 (545)
...-.+.+++ +++.+|+++||+-.+...|..+.
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 1123344444 47899999999865234444443
No 416
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.13 Score=55.71 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+..++-+++||.-.+ +...-..+...+.. .|..||++|.+...+.
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 4444566677777888999999876 12222333333322 3567999999988665
No 417
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.42 E-value=0.12 Score=49.05 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=29.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL 112 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 112 (545)
.-.++.|.|.+|+||||+|.++... ..+ .-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEEccCC
Confidence 3578999999999999999876542 122 2346788876443
No 418
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.42 E-value=0.011 Score=53.29 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|.++|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999998
No 419
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.40 E-value=0.039 Score=57.01 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCCH------H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKDY------Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~~------~ 141 (545)
-..++|.|..|+|||||.+.+++. .. -+.++++-++.. ..+.++....+..-+.... .....+.+. .
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~--~~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRS--AE--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcC--CC--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999983 32 245667766644 4455555443332111111 000111111 1
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++++|+++||+-.
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223455555 47899999999854
No 420
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.40 E-value=0.0051 Score=34.70 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=17.9
Q ss_pred cCcEEecCCCCCCcccHhhhcc
Q 039831 397 NLETLEMPSSHIDQSPEDIWMM 418 (545)
Q Consensus 397 ~L~~L~l~~~~l~~lp~~~~~L 418 (545)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999988999777654
No 421
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.40 E-value=0.037 Score=55.15 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
...+.|+|..|+||||+++++.. .+.... .++.+.-........ .... ++..... ..........+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~--~~~~~~-~iv~ied~~El~~~~--~~~~-~l~~~~~---~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD--EIPKDE-RIITIEDTREIFLPH--PNYV-HLFYSKG---GQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc--cCCccc-cEEEEcCccccCCCC--CCEE-EEEecCC---CCCcCccCHHHHHHHH
Confidence 46899999999999999999987 332221 222232111111110 0000 0000000 0111123345566777
Q ss_pred cCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 151 LTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 151 l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
++..+-.+|+|.+.+ .+.++.+... ..+.. -++.|+...+++.
T Consensus 215 Lr~~pd~ii~gE~r~-~e~~~~l~a~-~~g~~--~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 215 LRMRPDRIILGELRG-DEAFDFIRAV-NTGHP--GSITTLHAGSPEE 257 (308)
T ss_pred hcCCCCeEEEeccCC-HHHHHHHHHH-hcCCC--eEEEEEeCCCHHH
Confidence 888888899999998 7777654433 22222 2578887777555
No 422
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.39 E-value=0.098 Score=52.43 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
+.+.|++|+||||+|+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.39 E-value=0.021 Score=53.20 Aligned_cols=119 Identities=9% Similarity=0.040 Sum_probs=57.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
.+++.|.|+.|.||||+.+.++...-.. ...++|.... ..+ .+...|...+...+.. .........-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~l-~~~d~I~~~~~~~d~~-~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-ATL-PIFNRLLSRLSNDDSM-ERNLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cCc-cChhheeEecCCcccc-chhhhHHHHHHHHHHHH
Confidence 4789999999999999998886421110 1111221111 000 1222333333322110 00000010001112222
Q ss_pred --cCCceEEEEEcCCCC--Chhh----HHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 151 --LTNKKYFIVLDDVFH--YSEM----WSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 151 --l~~k~~LlVlDdv~~--~~~~----~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+..++-|+++|.... +..+ ...+...+. ..|+.+|++|.+.+++.
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAA 155 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHH
Confidence 235678999999844 1222 122233332 23789999999998877
No 424
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.36 E-value=0.031 Score=54.49 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+.+.+.... +-|.++|+.|+|||++++...+
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhc
Confidence 345666666543 4568999999999999999886
No 425
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.36 E-value=0.012 Score=53.57 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 426
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.087 Score=56.91 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=63.3
Q ss_pred ceeeecccHHHHHHHHHcC---------C-CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHH
Q 039831 49 DISEFERGREKFFDLLIEG---------P-SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKI 118 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---------~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 118 (545)
++-|.++.+.+|.+.+.-. . ....=|..+|++|.|||-+|++|+. +.+- -|++|..+.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL-----~FlSVKGPE----- 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSL-----NFLSVKGPE----- 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hcee-----eEEeecCHH-----
Confidence 8889999999999887542 1 2234567899999999999999999 3322 245555441
Q ss_pred HHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 119 LEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 119 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
++... -..+++.+.+...+.=..++|.|.||.+++
T Consensus 741 ---LLNMY---------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 ---LLNMY---------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHH---------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 11111 223445555555555567899999999975
No 427
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.35 E-value=0.045 Score=56.78 Aligned_cols=92 Identities=9% Similarity=0.102 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC--ccccCCC-CH-----HH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR--VRVIIGK-DY-----QF 142 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~-~~-----~~ 142 (545)
-..++|.|..|+|||||++.++...... ..+++..-.+...+.++.+.+...-..... .-...+. .. ..
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4688999999999999999998742221 123333323444555555555433211111 0000111 11 22
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCC
Q 039831 143 KKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 143 ~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
....+.+++ +++.+|+++||+-.
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 334455555 47899999999854
No 428
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.18 Score=48.42 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+.+.+..++-+++||+.-. +...-..+...+.....|..||++|.+...+.
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4445566777778888999999865 12222233333322122667888888877554
No 429
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.34 E-value=0.19 Score=50.00 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=32.6
Q ss_pred HHHHHHhcCCceEEEEEcCCCC--Ch----hhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 144 KSILRDYLTNKKYFIVLDDVFH--YS----EMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~--~~----~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
.-.+...+-.++-+++||..-. +. .-|+.+.. +. .+..||+||.+...+.
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~-~~---~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN-IG---KDKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-hc---CCCEEEEEcCCHHHHH
Confidence 3456677778889999999865 12 22333333 22 2567999999987555
No 430
>PRK15453 phosphoribulokinase; Provisional
Probab=95.34 E-value=0.082 Score=51.14 Aligned_cols=82 Identities=15% Similarity=0.026 Sum_probs=43.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC--CCHHHHHHHHHH--HhCCCCCccccCCCCHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL--YDFGKILEDIIK--SVMPPSRVRVIIGKDYQFKKS 145 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~~ 145 (545)
...+|+|.|.+|+||||+|+++.+ ..+..=.....++...- ++..+.-..+.. .-+..-..-..+..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 457999999999999999999886 33221112334443322 233332222211 111100000124566777887
Q ss_pred HHHHhcCC
Q 039831 146 ILRDYLTN 153 (545)
Q Consensus 146 ~l~~~l~~ 153 (545)
.++.+..+
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77776653
No 431
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.32 E-value=0.019 Score=53.88 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=40.7
Q ss_pred ceeeecccHHH---HHHHHHcC----CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREK---FFDLLIEG----PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~---i~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
+++|.++...+ |.+.|... ++..+-|..+|++|.|||.+|+++++ +.+..|
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~ 179 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL 179 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce
Confidence 88998887765 56666553 46788899999999999999999999 555444
No 432
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.30 E-value=0.025 Score=53.55 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
|.|.|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999988
No 433
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.30 E-value=0.022 Score=60.51 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=26.7
Q ss_pred HHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 61 FDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 61 ~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+.+.....+..+|+|.|..|+||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 334444445688999999999999999999987
No 434
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.29 E-value=0.00032 Score=64.38 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=76.9
Q ss_pred hhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccce
Q 039831 344 IFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMH 423 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~ 423 (545)
..+..++..++||++.|.+..+-..++-++.|.-|+++.|.+..+|..++.+..+..+++..|+.+.+|.+++.++.+++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 45667788889999998888777778888888889999988999999999999999999988888999988999999999
Q ss_pred eeecCccCCCC
Q 039831 424 LNFGSITLPAP 434 (545)
Q Consensus 424 L~l~~~~lp~~ 434 (545)
++..++.+.+.
T Consensus 116 ~e~k~~~~~~~ 126 (326)
T KOG0473|consen 116 NEQKKTEFFRK 126 (326)
T ss_pred hhhccCcchHH
Confidence 98887755433
No 435
>PRK13947 shikimate kinase; Provisional
Probab=95.29 E-value=0.012 Score=53.13 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 436
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.13 Score=50.87 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|...+..++-++++|+.-. +...-..+...+.. ...|..||++|.+...+.
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4444566777778889999999865 12222233333322 123677999999877654
No 437
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.29 E-value=0.35 Score=44.98 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhh-CC-CCCCCcEEEEecCChhHHh
Q 039831 140 YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVEL-LP-DDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 140 ~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~-~~-~~~~gs~iivTtR~~~v~~ 197 (545)
.+...-.+.+.+..++-++++|+--. +....+.+... +. ....|..||++|.+.....
T Consensus 131 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 131 GQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLP 192 (204)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHh
Confidence 34455667788888999999999765 12333444332 22 1233778888888876543
No 438
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.27 E-value=0.015 Score=54.27 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=25.4
Q ss_pred HHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 63 LLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 63 ~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
|+..+....+.|.|+|++|+|||||++.+.+
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3444445678899999999999999999976
No 439
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.26 E-value=0.04 Score=56.89 Aligned_cols=95 Identities=11% Similarity=0.143 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccc--ccc---------eeEEEEecCCCCHHHHHHHHHHHhC-CCCC---cccc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKF--YFD---------CLAWVRVSLLYDFGKILEDIIKSVM-PPSR---VRVI 135 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~---~~~~ 135 (545)
-+-++|.|-+|+|||||+..+.+..+... ..| .++++.+++.....+.+.+.+..-+ .... ....
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 35689999999999999999987533100 012 5667777877666666655555544 1111 0001
Q ss_pred CCCCH-----HHHHHHHHHhcC---CceEEEEEcCCCC
Q 039831 136 IGKDY-----QFKKSILRDYLT---NKKYFIVLDDVFH 165 (545)
Q Consensus 136 ~~~~~-----~~~~~~l~~~l~---~k~~LlVlDdv~~ 165 (545)
+.... ......+.++++ ++++|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 11111 223345677776 5899999999944
No 440
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.25 E-value=0.05 Score=48.91 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=32.5
Q ss_pred eeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 50 ISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 50 ~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
++|....+.++.+.+..-.....-|.|+|..|.||+.+|+++++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467788888888887653222244569999999999999999994
No 441
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.25 E-value=0.056 Score=56.25 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCC--------CCccccCCCCHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPP--------SRVRVIIGKDYQ 141 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~ 141 (545)
.-..++|+|..|+|||||++.+.+. ... -.+.+++.-.+..+..++....+..-... ............
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~--~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN--TSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc--cCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 3478999999999999999999873 221 22333433223344554433321111000 000000011112
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++.+|+++||+-.
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 2334455555 47899999999843
No 442
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.25 E-value=0.03 Score=54.63 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=78.0
Q ss_pred cceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcC-cccccccceeEEEEecCCCCHHH-HHHHHH
Q 039831 48 LDISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNN-NYVKFYFDCLAWVRVSLLYDFGK-ILEDII 123 (545)
Q Consensus 48 ~~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~~~~~~~~-~~~~i~ 123 (545)
..++|-.++..++-.++... -+...-|.|+|+.|.|||+|...+..+ .+...+| +-|...+....++ .++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 37999999999999988652 112345778999999999988877774 1233333 3445544433222 345555
Q ss_pred HHhCCCCCccccCCCCHHHHHHHHHHhcC------CceEEEEEcCCCC---Chh--hHHHHHhhCC-CCCCCcEEEEecC
Q 039831 124 KSVMPPSRVRVIIGKDYQFKKSILRDYLT------NKKYFIVLDDVFH---YSE--MWSDVVELLP-DDQNGSRVLILVT 191 (545)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~---~~~--~~~~l~~~~~-~~~~gs~iivTtR 191 (545)
.++..+.........+..+....+-..|+ +-++.+|+|..+- +.. -.-++.+.-. ...+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55433322111122233333444444443 2368888888754 011 1122222221 2334466677887
Q ss_pred Chh
Q 039831 192 EPT 194 (545)
Q Consensus 192 ~~~ 194 (545)
-..
T Consensus 181 ld~ 183 (408)
T KOG2228|consen 181 LDI 183 (408)
T ss_pred ccH
Confidence 644
No 443
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.23 E-value=0.041 Score=56.95 Aligned_cols=93 Identities=12% Similarity=0.201 Sum_probs=55.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccc-ccceeEEEEecC-CCCHHHHHHHHHHHhCCCCC--ccccCCCCH------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKF-YFDCLAWVRVSL-LYDFGKILEDIIKSVMPPSR--VRVIIGKDY------ 140 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~------ 140 (545)
-+-++|.|.+|+|||||+..+.+. ... +=+.++++-++. ...+.+++.++...=..... .-...+.+.
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999888763 322 113566777754 45567777766543211111 000111111
Q ss_pred HHHHHHHHHhc---CCceEEEEEcCCCC
Q 039831 141 QFKKSILRDYL---TNKKYFIVLDDVFH 165 (545)
Q Consensus 141 ~~~~~~l~~~l---~~k~~LlVlDdv~~ 165 (545)
......+.+++ +++.+|+++||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 22345567777 46899999999854
No 444
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.22 E-value=0.078 Score=50.77 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
|..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988875
No 445
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.20 E-value=0.0087 Score=49.45 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
|-|+|.+|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999887
No 446
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.18 E-value=0.02 Score=52.75 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=46.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccc--------ceeEEEEecCCCCHHHHHHHHHHHhCCCCC-------c----
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYF--------DCLAWVRVSLLYDFGKILEDIIKSVMPPSR-------V---- 132 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~---- 132 (545)
.++.|+|.+|+||||++..+....-....| ..++|++...+. ..+.+.+......... .
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeecccc
Confidence 478899999999999998877632222222 247788766653 2232222222211110 0
Q ss_pred -------cccCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCC
Q 039831 133 -------RVIIGKDYQFKKSILRDYLTN--KKYFIVLDDVFH 165 (545)
Q Consensus 133 -------~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~ 165 (545)
............+.+.+.+.. +.-++|+|++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 000011124455666776665 467999997753
No 447
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.26 Score=49.14 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|.+.|..++-+++||+.-. +......+...+.....+..||++|.+...+.
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~ 263 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAA 263 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHH
Confidence 3344556666777888999999865 12223333333322111345888888887655
No 448
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.18 E-value=0.02 Score=54.33 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=29.0
Q ss_pred cHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 56 GREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 56 ~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...++.+.+.....+..+|||.|.+|+||+||..++..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45567777766555678999999999999999988776
No 449
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.18 E-value=0.047 Score=54.11 Aligned_cols=99 Identities=13% Similarity=0.001 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-cccCCCCHHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-RVIIGKDYQFKKSILRD 149 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~ 149 (545)
-+++-|+|..|+||||||..+.. .....-..++||+..+.++.... ..++.+... --.+....++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHHHH
Confidence 46999999999999999988887 45444456889998888776543 344333220 00122344555555555
Q ss_pred hcC-CceEEEEEcCCCCChhhHHHHHhhC
Q 039831 150 YLT-NKKYFIVLDDVFHYSEMWSDVVELL 177 (545)
Q Consensus 150 ~l~-~k~~LlVlDdv~~~~~~~~~l~~~~ 177 (545)
.++ +.--++|+|-|-. ...-..+...+
T Consensus 126 lirsg~~~lVVvDSv~a-l~p~~E~e~~~ 153 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAA-LVPKAELEGEI 153 (322)
T ss_dssp HHHTTSESEEEEE-CTT--B-HHHHTTST
T ss_pred HhhcccccEEEEecCcc-cCCHHHHhhcc
Confidence 554 3456899999876 43333333333
No 450
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.17 E-value=0.03 Score=51.42 Aligned_cols=125 Identities=11% Similarity=0.102 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccC
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVII 136 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 136 (545)
..+........ -..++|+|..|+||||+++++.. .+... ...+.+ ........-.... .++.... ....
T Consensus 14 ~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~--~i~~~-~~~i~i--ed~~E~~~~~~~~-~~~~~~~--~~~~ 82 (186)
T cd01130 14 QAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA--FIPPD-ERIITI--EDTAELQLPHPNW-VRLVTRP--GNVE 82 (186)
T ss_pred HHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh--hcCCC-CCEEEE--CCccccCCCCCCE-EEEEEec--CCCC
Confidence 34444444433 36899999999999999999987 33322 122222 1111100000000 0000000 0001
Q ss_pred CCCHHHHHHHHHHhcCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcE-EEEecCChhHHh
Q 039831 137 GKDYQFKKSILRDYLTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSR-VLILVTEPTLLT 197 (545)
Q Consensus 137 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~-iivTtR~~~v~~ 197 (545)
........+.++..++..+=.++++.+++ .+.|+.+... ..|.. ++.|..-.++..
T Consensus 83 ~~~~~~~~~~l~~~lR~~pd~i~igEir~-~ea~~~~~a~----~tGh~g~~~T~Ha~s~~~ 139 (186)
T cd01130 83 GSGEVTMADLLRSALRMRPDRIIVGEVRG-GEALDLLQAM----NTGHPGGMTTIHANSAEE 139 (186)
T ss_pred CCCccCHHHHHHHHhccCCCEEEEEccCc-HHHHHHHHHH----hcCCCCceeeecCCCHHH
Confidence 11223455666777777788899999999 7777655433 23555 666665555544
No 451
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.17 E-value=0.17 Score=48.72 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+.+.+..++-+++||+.-. +...-+.+...+.. ...|..||++|.+...+.
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~ 209 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILD 209 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3444556777777888999999865 12222223222211 123667999999877555
No 452
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.15 E-value=0.061 Score=55.62 Aligned_cols=91 Identities=9% Similarity=0.081 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEec-CCCCHHHHHHHHHHHhCCCCC-----cc---ccCCCCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVS-LLYDFGKILEDIIKSVMPPSR-----VR---VIIGKDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~-----~~---~~~~~~~~ 141 (545)
-..++|.|..|+|||||++.+..... .+..+...+. +..+..++....+.+-+.... .. ........
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~ 230 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKAT 230 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHH
Confidence 47899999999999999999987321 1222222232 233344444343333221110 00 01111223
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
+....+.+++ +++.+|+++||+-.
T Consensus 231 e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 231 ELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHhhhccCCEEEeecchhH
Confidence 3444556655 46899999999854
No 453
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.15 Score=49.95 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+...+...+-++++|+... +......+...+.. ...|..||++|.+...+.
T Consensus 142 q~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 142 QKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 3344556666777888999999865 22333333333322 123667888888876554
No 454
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.15 E-value=0.027 Score=52.27 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=28.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHH
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGK 117 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 117 (545)
.|+|+|-||+||||+|..++...--++.| .+.=|+...++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChHH
Confidence 58999999999999998855511112213 344566666665543
No 455
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.15 E-value=0.052 Score=56.25 Aligned_cols=91 Identities=9% Similarity=0.085 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC-CCCHHHHHHHHHHHhCCCCC---ccccCCCCH-----H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL-LYDFGKILEDIIKSVMPPSR---VRVIIGKDY-----Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-----~ 141 (545)
-..++|+|..|+|||||++.+.+. . . .+.++...+.. ..+..++...+...-..... ....+.... .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~--~-~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRF--T-E-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC--C-C-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 457999999999999999999873 2 1 23333333433 33455555554443222111 000111111 2
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++++|+++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 2234455555 47899999999854
No 456
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.14 E-value=0.13 Score=56.92 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=32.8
Q ss_pred HHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 144 KSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
.=.|.+.+-.++-+++||..-+ +.+.=..+...+.. ....+.|+||-|..-+..
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 3466788889999999999854 11111222233321 233577888888776655
No 457
>PRK13949 shikimate kinase; Provisional
Probab=95.14 E-value=0.016 Score=52.30 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-|.|+|+.|+||||+|+.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 458
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.13 E-value=0.026 Score=59.47 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=50.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEE-EEecCCC-CHHHHHHHHHHHhCCCCCc-cccCCCCHHHHHHHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYF-DCLAW-VRVSLLY-DFGKILEDIIKSVMPPSRV-RVIIGKDYQFKKSIL 147 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~w-v~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l 147 (545)
.-.+|+|.+|+|||||++.+++ .+.... ++.++ +-|.... .+.++.+.+-..+-....+ ..........+.-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998 443322 33333 3344433 3444433331111111110 000111113334445
Q ss_pred HHhc--CCceEEEEEcCCCC
Q 039831 148 RDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 148 ~~~l--~~k~~LlVlDdv~~ 165 (545)
.+++ .++.+||++|++-.
T Consensus 495 Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHcCCCEEEEEeCchH
Confidence 5666 57899999999854
No 459
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.12 E-value=0.09 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999865
No 460
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=95.12 E-value=0.18 Score=54.15 Aligned_cols=127 Identities=8% Similarity=-0.035 Sum_probs=66.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-ccc--cc---------------eeEEEEec----CCCCHH------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KFY--FD---------------CLAWVRVS----LLYDFG------------ 116 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---------------~~~wv~~~----~~~~~~------------ 116 (545)
-.+++|+|..|+|||||.+.++.-..- .+. |+ .+.|+.-. ...++.
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 116 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQA 116 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchH
Confidence 468999999999999999999863210 110 11 12233211 001111
Q ss_pred --HHHHHHHHHhCCCCC-ccccC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEe
Q 039831 117 --KILEDIIKSVMPPSR-VRVII-GKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLIL 189 (545)
Q Consensus 117 --~~~~~i~~~l~~~~~-~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivT 189 (545)
+....++..++.... ..... -+..+...-.|...|..++-+++||.--. +...-..+...+.. ...|..||++
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiv 196 (510)
T PRK15439 117 SMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFI 196 (510)
T ss_pred HHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 122344445444321 11111 12224444566777778888999999765 12212222222211 1236779999
Q ss_pred cCChhHHh
Q 039831 190 VTEPTLLT 197 (545)
Q Consensus 190 tR~~~v~~ 197 (545)
|.+...+.
T Consensus 197 tHd~~~~~ 204 (510)
T PRK15439 197 SHKLPEIR 204 (510)
T ss_pred eCCHHHHH
Confidence 99877655
No 461
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.11 E-value=0.054 Score=48.55 Aligned_cols=122 Identities=11% Similarity=-0.021 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeE--EEEecCCCCHHHHHHHHHHHhC--CCCCccccCC-----CCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLA--WVRVSLLYDFGKILEDIIKSVM--PPSRVRVIIG-----KDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~-----~~~~ 141 (545)
.+.|-|++..|.||||.|..++-. .....+.+.+ |+.-........++..+.-.+. +....-.... ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 467888999999999999666541 1222333221 4433322333344433200000 0000000000 0112
Q ss_pred HHHHHHHHhcCCc-eEEEEEcCCCC----ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 142 FKKSILRDYLTNK-KYFIVLDDVFH----YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 142 ~~~~~l~~~l~~k-~~LlVlDdv~~----~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
+..+..++.+... -=|||||.+-. ..-..+.+...+.....+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2334445555444 45999999853 0122334444444344467899999985
No 462
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.10 E-value=0.052 Score=56.11 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC-CCCHHHHHHHHHHHhCCCCC---ccccCCCCH-----H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL-LYDFGKILEDIIKSVMPPSR---VRVIIGKDY-----Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-----~ 141 (545)
-..++|.|..|+|||||++.+.+. .+ .+..+++.++. ...+.+.+.+....=..... ....+.... .
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~--~~--~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNA--PD--ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCC--CC--CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 468899999999999999999873 22 33445554443 44555555554321000000 000111111 2
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++++|+++||+-.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 2233455555 47899999999854
No 463
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.09 E-value=0.014 Score=51.10 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|.|+|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 464
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.07 E-value=0.021 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.222 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 465
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.07 E-value=0.13 Score=49.54 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=79.2
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+|+|-.. .+++..++......-+.+.++|+.|+|||+-++.+++ ..+..+.+..+..++...++..+......
T Consensus 73 ~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~------s~p~~~l~~~~p~~~a~~~i~~i~~~~~~ 145 (297)
T COG2842 73 DFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAP------SNPNALLIEADPSYTALVLILIICAAAFG 145 (297)
T ss_pred cccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcc------cCccceeecCChhhHHHHHHHHHHHHHhc
Confidence 7777644 3445555544433445888999999999999999998 23334445677778887777777777665
Q ss_pred CCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhC
Q 039831 129 PSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELL 177 (545)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~ 177 (545)
... .........+...+++..-+++.|+... -...++.+....
T Consensus 146 ~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 146 ATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred ccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 433 3455666777777788888999999876 235556655444
No 466
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.07 E-value=0.083 Score=56.75 Aligned_cols=45 Identities=11% Similarity=-0.036 Sum_probs=35.2
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|....+.++.+.+..-...-.-|.|+|..|.||+++|+++++
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 899999888888877753211223477999999999999999876
No 467
>PRK05973 replicative DNA helicase; Provisional
Probab=95.06 E-value=0.093 Score=49.84 Aligned_cols=88 Identities=9% Similarity=-0.009 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-------cccCCCCHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-------RVIIGKDYQFK 143 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~~ 143 (545)
-.++.|.|.+|+|||++|.++... ..+. =..+++++...+ ..++...+. +++..... ...+....++.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~-~a~~-Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVE-AMKS-GRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH-HHhc-CCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHHH
Confidence 458889999999999999887653 2222 234667765544 344444432 22221110 00111233444
Q ss_pred HHHHHHhcCCceEEEEEcCCCC
Q 039831 144 KSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
...+... .+.-++|+|-+..
T Consensus 139 i~~l~~~--~~~~lVVIDsLq~ 158 (237)
T PRK05973 139 IARLASA--PRGTLVVIDYLQL 158 (237)
T ss_pred HHHHHHh--hCCCEEEEEcHHH
Confidence 4444332 2345899998753
No 468
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.05 E-value=0.15 Score=49.63 Aligned_cols=127 Identities=8% Similarity=-0.024 Sum_probs=63.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc-c--cccee-EEEE----ecCCCCHHHHH------------------HHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK-F--YFDCL-AWVR----VSLLYDFGKIL------------------EDIIK 124 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~~-~wv~----~~~~~~~~~~~------------------~~i~~ 124 (545)
-.+++|+|..|+|||||.+.++...... + .+++. .++. +....++.+-+ ..++.
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 129 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIE 129 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998842211 1 11211 1111 11111111111 11222
Q ss_pred HhCCCCC-ccccCCCCHH-HHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 125 SVMPPSR-VRVIIGKDYQ-FKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 125 ~l~~~~~-~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
.++.... .......+.. ...-.+...+..++-+++||+.-. +...-..+...+.. ...|..||++|.+...+.
T Consensus 130 ~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~ 207 (264)
T PRK13546 130 FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207 (264)
T ss_pred HcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 2221111 0111222223 333356777777888999999865 12211222222211 124778999999877655
No 469
>PRK13409 putative ATPase RIL; Provisional
Probab=95.05 E-value=0.15 Score=55.68 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=66.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEE----EE-ecCC------CCHHHHH-------------HHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAW----VR-VSLL------YDFGKIL-------------EDIIKSV 126 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w----v~-~~~~------~~~~~~~-------------~~i~~~l 126 (545)
-.+++|+|..|+|||||++.++...+ ...+.++ +. +.+. .++.+.+ ..++..+
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 36899999999999999999987321 1112221 11 1121 1222222 2233333
Q ss_pred CCCCC-ccccC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 127 MPPSR-VRVII-GKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 127 ~~~~~-~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
+.... ..... -+..+...-.+...+..++-+++||.--. +...-..+...+.. ...|..||++|.+...+.
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 32211 11111 22224444567777888889999998755 12222233333322 123667999999987666
No 470
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.11 Score=48.33 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999874
No 471
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.04 E-value=0.17 Score=50.27 Aligned_cols=57 Identities=14% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|...+..++-+++||..-. +...-+.+...+.. ...|..||++|.+.+.+.
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHH
Confidence 3344556777778889999999865 12212222222211 123677999999876544
No 472
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.03 E-value=0.021 Score=55.51 Aligned_cols=43 Identities=23% Similarity=0.030 Sum_probs=34.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY 113 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 113 (545)
..-+++.|+|.+|+|||++|.++.. +.......++||+....+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 3468999999999999999988877 555557889999876553
No 473
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.01 E-value=0.018 Score=52.41 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++++|+|+.|+||||||+.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999998
No 474
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.01 E-value=0.015 Score=54.07 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 475
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.34 Score=48.34 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+.+...+..+. -...+.++|+.|+||+++|.++++
T Consensus 13 ~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~ 48 (319)
T PRK08769 13 YDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAE 48 (319)
T ss_pred HHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHH
Confidence 445555554432 345688999999999999988776
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.00 E-value=0.065 Score=55.37 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=52.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC--ccccCCCC------HHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR--VRVIIGKD------YQF 142 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~------~~~ 142 (545)
-..++|.|..|+|||||++.++... +. ...++...-.+.....+.+.+.+..-+.... -....+.+ ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~--~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNA--KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC--CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 4578999999999999999998842 21 1223332222346666666655544221111 00001111 122
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCC
Q 039831 143 KKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 143 ~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
....+.+++ +++++|+++||+-.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHH
Confidence 234455555 47899999999865
No 477
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.12 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.-.+++++|..|+||||++..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999887765
No 478
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.014 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+.|-+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4677889999999999999988
No 479
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.99 E-value=0.019 Score=49.79 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|+|+|+.|+|||||++.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 480
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.99 E-value=0.018 Score=52.29 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 481
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.98 E-value=0.22 Score=45.82 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 039831 74 VAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 74 v~I~G~gGiGKTtLa~~v~~ 93 (545)
|.|.|++|+||||+|+.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988
No 482
>PRK04328 hypothetical protein; Provisional
Probab=94.97 E-value=0.079 Score=51.07 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=30.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY 113 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 113 (545)
.-.++.|.|.+|+|||+||.++... ..+. =..++||+....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeCCH
Confidence 3578999999999999999876552 2322 3457888866543
No 483
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.96 E-value=0.056 Score=56.37 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=56.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEecC-CCCHHHHHHHHHHHhCCCCC--ccc-cCCCC-----H
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFD--CLAWVRVSL-LYDFGKILEDIIKSVMPPSR--VRV-IIGKD-----Y 140 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~--~~~-~~~~~-----~ 140 (545)
+-++|.|-.|+|||||+..+.+.....+.+. .++++-+++ ...+.+++..+...=..... ... .+... .
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 5689999999999999999988543322221 456666654 44566666666543221111 000 01111 1
Q ss_pred HHHHHHHHHhcC---CceEEEEEcCCCC
Q 039831 141 QFKKSILRDYLT---NKKYFIVLDDVFH 165 (545)
Q Consensus 141 ~~~~~~l~~~l~---~k~~LlVlDdv~~ 165 (545)
......+.++++ ++++|+++||+-.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 223445677775 6799999999854
No 484
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.94 E-value=0.067 Score=53.76 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHcCC-CCcEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEE----ecCCCCHHHHHHHHHHH
Q 039831 54 ERGREKFFDLLIEGP-SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF---DCLAWVR----VSLLYDFGKILEDIIKS 125 (545)
Q Consensus 54 ~~~~~~i~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~----~~~~~~~~~~~~~i~~~ 125 (545)
+.-.+.+.+.+...+ ....+|||.|.-|+|||++.+.+.+ ..+... ..++|+. -....-...++..|..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 445677888887653 5688999999999999999999988 444431 1223333 22222345556566655
Q ss_pred hC
Q 039831 126 VM 127 (545)
Q Consensus 126 l~ 127 (545)
+.
T Consensus 80 l~ 81 (325)
T PF07693_consen 80 LE 81 (325)
T ss_pred HH
Confidence 53
No 485
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.94 E-value=0.024 Score=56.26 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=29.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKIL 119 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 119 (545)
.+++.+.|-||+||||+|.+.+-. ....=..++-|+.....++.+++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHHHHh
Confidence 368899999999999999766552 21111235556655555554444
No 486
>PLN02348 phosphoribulokinase
Probab=94.94 E-value=0.11 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+...+|||.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999988
No 487
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.93 E-value=0.16 Score=53.34 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-c
Q 039831 54 ERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-V 132 (545)
Q Consensus 54 ~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~ 132 (545)
..-+.++-..|..+=..-.++.|.|.+|+|||||+.+++.. ....=..++||+.... ..++.. -+..++.... -
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l 151 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNL 151 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHe
Confidence 33455555555433234578999999999999999888663 3222135678875443 333322 2233432211 0
Q ss_pred cccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 133 RVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
.-....+.+++...+.+ .+.-++|+|.+..
T Consensus 152 ~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 152 YVLSETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred EEcCCCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 01122344555544433 2556899999854
No 488
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.93 E-value=0.073 Score=53.04 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=53.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-CCHHHHHHHHHHHh----CCCCC-----ccccCCCCH-
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-YDFGKILEDIIKSV----MPPSR-----VRVIIGKDY- 140 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l----~~~~~-----~~~~~~~~~- 140 (545)
+.++|.|..|+|||+|++++.+.. +-+.++++-+++. ..+.+++.++-..- +...- -....+...
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~ 233 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVA 233 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHH
Confidence 578999999999999999999842 2246777877654 45566666654311 11100 000111111
Q ss_pred -----HHHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 141 -----QFKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 141 -----~~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
-...-.+.+++ +++.+|+++|++..
T Consensus 234 ~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 234 AREASIYTGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcChhH
Confidence 11223345555 47899999999743
No 489
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.92 E-value=0.046 Score=55.85 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=39.0
Q ss_pred ceeeecccHHHHHHHHHcC------------CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
.++|.++.++.+..++... +...+-+.++|++|+|||++|+.+.. .....|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~f 78 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChh
Confidence 5889999999988887431 11136788999999999999999988 444444
No 490
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.92 E-value=0.18 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-.+++|+|..|+|||||++.++.-
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 491
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.91 E-value=0.093 Score=50.89 Aligned_cols=40 Identities=18% Similarity=0.077 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL 111 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 111 (545)
.-.++.|.|.+|+|||++|.+++.. ..+. =..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~-~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT-QASR-GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHhC-CCcEEEEEecC
Confidence 3578999999999999999887552 2222 23577888764
No 492
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.91 E-value=0.028 Score=51.39 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=28.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVR 108 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 108 (545)
.+++.|+|+.|+|||||++++.. ...+.|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46889999999999999999998 6666775444443
No 493
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.90 E-value=0.28 Score=48.50 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=66.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccce-------------------eEEEEe----cCCCCHHHHH--------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDC-------------------LAWVRV----SLLYDFGKIL-------- 119 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------------------~~wv~~----~~~~~~~~~~-------- 119 (545)
-.++++.|+.|+|||||.+.+..- ++. ..+ +.++.- -...+..+.+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl--~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL--LKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC--cCC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 369999999999999999999883 221 111 223321 1112333333
Q ss_pred ----------HHHHHHhCCCCC-ccccCCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--Ch----hhHHHHHhhCCCCC
Q 039831 120 ----------EDIIKSVMPPSR-VRVIIGKD-YQFKKSILRDYLTNKKYFIVLDDVFH--YS----EMWSDVVELLPDDQ 181 (545)
Q Consensus 120 ----------~~i~~~l~~~~~-~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~--~~----~~~~~l~~~~~~~~ 181 (545)
..++..++.... .......+ -....-.+...|-.++=++|||.--+ +. ..|+.+...-..
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-- 185 (293)
T COG1131 108 LSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-- 185 (293)
T ss_pred CChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--
Confidence 233344433321 00011111 22333456667778889999999754 12 234444333211
Q ss_pred CCcEEEEecCChhHHh
Q 039831 182 NGSRVLILVTEPTLLT 197 (545)
Q Consensus 182 ~gs~iivTtR~~~v~~ 197 (545)
.|..|++||...+.+.
T Consensus 186 g~~tvlissH~l~e~~ 201 (293)
T COG1131 186 GGVTILLSTHILEEAE 201 (293)
T ss_pred CCcEEEEeCCcHHHHH
Confidence 1367999999877666
No 494
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.29 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|++++|+.|+||||.+..++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999998888876
No 495
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.88 E-value=0.058 Score=59.71 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=36.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|....++++.+.+..-...-.-|.|+|..|+||+++|+++++.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 8999998888888877653222234779999999999999999983
No 496
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.88 E-value=0.059 Score=56.39 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=54.5
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCcccccccce-eEEEEecCC-CCHHHHHHHHHHHhCCCCC---ccccCCCCH----
Q 039831 71 LSVVAILDSSGFDKTAFA-ADTYNNNYVKFYFDC-LAWVRVSLL-YDFGKILEDIIKSVMPPSR---VRVIIGKDY---- 140 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~---- 140 (545)
-+-++|.|-.|+|||||| ..+.+. . .-+. ++++-+++. ..+.++...+...=..... ....+....
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ 237 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYI 237 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHH
Confidence 356899999999999997 577773 2 2344 677878765 4566666666554221111 000011111
Q ss_pred -HHHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 141 -QFKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 141 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
......+.+++ +++.+|+|+||+-.
T Consensus 238 ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 238 APYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 11233455555 57899999999954
No 497
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.88 E-value=0.063 Score=55.42 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC-CCCHHHHHHHHHHHhCCCCC---ccccCCCCH-----H
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL-LYDFGKILEDIIKSVMPPSR---VRVIIGKDY-----Q 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-----~ 141 (545)
-..++|+|..|+|||||++.+.+. .+. +..+..-++. .....++....+.+-+.... ....+.... .
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~ 212 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAA 212 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999873 222 2222222332 23444454443332111101 000111111 2
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
.....+.+++ +++.+|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 213 FTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 2234455555 47899999999854
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.87 E-value=0.03 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|+|++|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999988
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.032 Score=50.05 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-.++.|.|++|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999994
No 500
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.86 E-value=0.26 Score=47.56 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 143 KKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 143 ~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
..-.+.+.+..++-+++||..-. +......+...+.....|..||++|.+...+.
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~ 210 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAA 210 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34455666677888999999764 12223333333322123677888888877655
Done!