Query 039831
Match_columns 545
No_of_seqs 353 out of 3784
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 23:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5E-32 1.7E-36 290.8 14.8 236 51-297 131-462 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.3E-26 4.4E-31 253.7 10.4 232 50-297 130-434 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1.3E-25 4.4E-30 264.3 13.7 233 49-297 125-443 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 3.2E-23 1.1E-27 225.0 12.3 232 49-297 125-443 (591)
5 4fcg_A Uncharacterized protein 99.9 5.8E-22 2E-26 198.8 12.6 216 299-531 80-316 (328)
6 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.8E-25 189.4 14.8 207 323-544 82-305 (328)
7 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-20 4.2E-25 187.9 13.6 226 300-544 50-295 (313)
8 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-20 1.4E-24 184.1 13.5 208 323-545 51-273 (313)
9 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.6E-24 188.7 17.4 206 323-542 76-292 (452)
10 3zyj_A Leucine-rich repeat-con 99.8 2.3E-19 7.7E-24 187.5 16.6 215 300-530 64-293 (440)
11 2z66_A Variable lymphocyte rec 99.8 1.2E-19 4.1E-24 180.1 12.0 218 298-531 26-263 (306)
12 3rgz_A Protein brassinosteroid 99.8 3.3E-19 1.1E-23 199.2 15.7 103 323-429 443-548 (768)
13 3v47_A TOLL-like receptor 5B a 99.8 8E-19 2.7E-23 184.0 17.5 128 298-430 28-165 (455)
14 3o6n_A APL1; leucine-rich repe 99.8 1.3E-18 4.4E-23 178.8 17.1 218 299-532 44-311 (390)
15 2id5_A Lingo-1, leucine rich r 99.8 1.6E-18 5.3E-23 183.1 17.7 238 298-544 30-324 (477)
16 1xku_A Decorin; proteoglycan, 99.8 3.4E-18 1.2E-22 171.5 19.3 219 298-536 50-283 (330)
17 2z80_A TOLL-like receptor 2, v 99.8 4.2E-19 1.4E-23 179.9 12.4 220 299-532 51-317 (353)
18 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-18 6E-23 169.9 15.7 213 304-532 15-241 (285)
19 3zyi_A Leucine-rich repeat-con 99.8 2.2E-18 7.7E-23 180.6 17.1 219 298-532 73-306 (452)
20 3rgz_A Protein brassinosteroid 99.8 1.6E-18 5.5E-23 193.6 16.9 230 299-544 393-708 (768)
21 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-18 5.8E-23 173.9 15.2 122 299-429 53-182 (332)
22 1xku_A Decorin; proteoglycan, 99.8 3.3E-18 1.1E-22 171.6 17.2 223 301-544 32-267 (330)
23 3zyj_A Leucine-rich repeat-con 99.8 2.8E-18 9.7E-23 179.2 17.0 227 303-545 46-284 (440)
24 3oja_B Anopheles plasmodium-re 99.8 2.2E-18 7.6E-23 187.0 16.4 217 300-532 51-317 (597)
25 4fmz_A Internalin; leucine ric 99.8 1E-17 3.5E-22 169.1 20.2 226 300-543 66-314 (347)
26 2id5_A Lingo-1, leucine rich r 99.8 7.1E-18 2.4E-22 178.0 19.6 229 304-544 15-276 (477)
27 2z66_A Variable lymphocyte rec 99.8 2.4E-18 8.2E-23 170.6 12.9 225 304-544 11-252 (306)
28 2z80_A TOLL-like receptor 2, v 99.8 1.7E-18 5.8E-23 175.4 12.0 228 305-545 36-306 (353)
29 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-17 6E-22 162.7 17.4 190 349-545 31-230 (285)
30 3o6n_A APL1; leucine-rich repe 99.7 6.4E-18 2.2E-22 173.6 14.4 188 300-500 69-304 (390)
31 3oja_B Anopheles plasmodium-re 99.7 5.6E-18 1.9E-22 183.9 14.1 187 299-500 74-310 (597)
32 4eco_A Uncharacterized protein 99.7 2.1E-18 7.2E-23 188.5 10.3 233 299-544 205-517 (636)
33 2z7x_B TOLL-like receptor 1, v 99.7 1.1E-17 3.7E-22 178.6 15.2 120 300-429 21-148 (520)
34 4fmz_A Internalin; leucine ric 99.7 3E-17 1E-21 165.7 17.7 221 300-544 110-337 (347)
35 2ft3_A Biglycan; proteoglycan, 99.7 3.8E-17 1.3E-21 164.0 18.3 218 301-536 34-284 (332)
36 2z7x_B TOLL-like receptor 1, v 99.7 2E-17 6.7E-22 176.6 16.9 136 303-450 3-145 (520)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.8E-17 6.1E-22 178.7 16.6 121 303-431 34-158 (562)
38 3t6q_A CD180 antigen; protein- 99.7 3.1E-17 1.1E-21 178.3 18.4 230 299-542 277-526 (606)
39 1h6u_A Internalin H; cell adhe 99.7 1.8E-17 6E-22 164.6 15.0 194 318-534 39-235 (308)
40 3v47_A TOLL-like receptor 5B a 99.7 2.6E-17 8.8E-22 172.5 16.5 123 323-453 31-164 (455)
41 3j0a_A TOLL-like receptor 5; m 99.7 3.8E-17 1.3E-21 184.5 18.1 128 298-430 22-159 (844)
42 3t6q_A CD180 antigen; protein- 99.7 4.5E-17 1.5E-21 177.1 17.7 188 351-544 255-480 (606)
43 3rfs_A Internalin B, repeat mo 99.7 2.2E-17 7.7E-22 160.8 13.6 202 317-537 38-243 (272)
44 4eco_A Uncharacterized protein 99.7 5.5E-18 1.9E-22 185.1 10.3 209 317-543 203-460 (636)
45 3vq2_A TLR4, TOLL-like recepto 99.7 1.6E-17 5.5E-22 180.6 13.5 216 300-533 307-538 (606)
46 1ziw_A TOLL-like receptor 3; i 99.7 2.2E-17 7.5E-22 182.1 14.3 235 298-544 23-300 (680)
47 2o6q_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 154.8 17.3 172 350-531 37-220 (270)
48 1o6v_A Internalin A; bacterial 99.7 6.8E-17 2.3E-21 170.0 15.7 224 300-544 46-291 (466)
49 4ecn_A Leucine-rich repeat pro 99.7 1.6E-17 5.5E-22 185.6 11.3 229 299-545 447-758 (876)
50 3vq2_A TLR4, TOLL-like recepto 99.7 6E-17 2.1E-21 176.1 15.5 226 299-545 284-526 (606)
51 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5.3E-22 175.6 9.5 218 301-542 35-264 (487)
52 2z62_A TOLL-like receptor 4, v 99.7 3.7E-17 1.3E-21 159.6 11.4 195 323-532 29-240 (276)
53 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.6E-22 165.6 8.8 222 301-543 35-265 (317)
54 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.8E-21 156.6 15.2 190 323-531 11-210 (290)
55 2o6q_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 153.9 16.0 184 350-545 16-210 (270)
56 1h6u_A Internalin H; cell adhe 99.7 6.2E-17 2.1E-21 160.7 12.5 184 345-545 36-222 (308)
57 4ecn_A Leucine-rich repeat pro 99.7 4.7E-17 1.6E-21 181.8 12.5 169 317-500 445-653 (876)
58 2z63_A TOLL-like receptor 4, v 99.7 1.2E-16 4.2E-21 172.2 15.1 138 298-445 26-175 (570)
59 2z81_A CD282 antigen, TOLL-lik 99.7 7.8E-17 2.7E-21 173.0 13.5 144 298-451 24-180 (549)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.1E-16 7.3E-21 170.2 17.0 122 298-429 50-179 (562)
61 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-16 3.7E-21 176.5 14.6 229 305-545 9-277 (680)
62 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-16 3.9E-21 180.5 15.0 135 309-453 13-158 (844)
63 3bz5_A Internalin-J, INLJ; leu 99.7 5.6E-16 1.9E-20 162.3 18.8 211 300-540 42-257 (457)
64 3bz5_A Internalin-J, INLJ; leu 99.7 3.2E-16 1.1E-20 164.1 16.6 198 317-544 39-237 (457)
65 1o6v_A Internalin A; bacterial 99.7 8.9E-16 3.1E-20 161.4 19.9 198 323-543 178-378 (466)
66 2z62_A TOLL-like receptor 4, v 99.7 2.2E-16 7.5E-21 154.0 12.4 186 350-545 28-229 (276)
67 1h6t_A Internalin B; cell adhe 99.7 2E-16 6.7E-21 155.7 11.9 153 346-533 64-217 (291)
68 1p9a_G Platelet glycoprotein I 99.7 6.1E-16 2.1E-20 152.1 15.3 189 300-501 10-205 (290)
69 3rfs_A Internalin B, repeat mo 99.7 6.4E-16 2.2E-20 150.5 14.5 181 344-532 35-221 (272)
70 1wwl_A Monocyte differentiatio 99.7 5.9E-17 2E-21 161.1 7.2 195 323-530 96-310 (312)
71 2z63_A TOLL-like receptor 4, v 99.7 3.1E-16 1.1E-20 169.1 13.3 214 301-532 305-534 (570)
72 2z81_A CD282 antigen, TOLL-lik 99.6 1.4E-15 4.7E-20 163.3 15.5 209 309-531 14-238 (549)
73 1m9s_A Internalin B; cell inva 99.6 4.8E-16 1.6E-20 167.7 11.0 161 323-500 44-206 (605)
74 4g8a_A TOLL-like receptor 4; l 99.6 3E-15 1E-19 163.1 16.5 125 298-428 50-182 (635)
75 3m19_A Variable lymphocyte rec 99.6 4.5E-15 1.6E-19 142.6 15.8 171 352-531 16-194 (251)
76 3g06_A SSPH2 (leucine-rich rep 99.6 5.1E-15 1.7E-19 160.0 17.3 211 298-538 59-306 (622)
77 1wwl_A Monocyte differentiatio 99.6 2.3E-16 7.7E-21 156.9 5.8 186 348-545 93-301 (312)
78 2xwt_C Thyrotropin receptor; s 99.6 5.4E-16 1.9E-20 147.9 8.1 181 351-543 32-232 (239)
79 3o53_A Protein LRIM1, AGAP0063 99.6 7.6E-16 2.6E-20 153.4 7.5 206 317-544 31-241 (317)
80 3oja_A Leucine-rich immune mol 99.6 1.2E-15 4E-20 161.2 9.1 206 317-544 31-241 (487)
81 4glp_A Monocyte differentiatio 99.6 1.6E-15 5.4E-20 150.7 8.6 195 323-530 92-308 (310)
82 2ca6_A RAN GTPase-activating p 99.6 8.6E-16 2.9E-20 157.4 6.9 223 299-532 31-319 (386)
83 3g06_A SSPH2 (leucine-rich rep 99.6 2.9E-14 9.9E-19 154.1 18.3 210 301-545 41-289 (622)
84 2xwt_C Thyrotropin receptor; s 99.6 3.2E-15 1.1E-19 142.5 9.7 188 323-527 32-237 (239)
85 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.1E-20 146.0 7.5 151 346-532 37-188 (263)
86 1jl5_A Outer protein YOPM; leu 99.6 4.1E-14 1.4E-18 148.0 16.7 160 298-476 89-248 (454)
87 1h6t_A Internalin B; cell adhe 99.6 3.2E-14 1.1E-18 139.8 14.9 164 300-476 46-211 (291)
88 2ast_B S-phase kinase-associat 99.6 1.5E-15 5.1E-20 152.4 5.0 232 300-543 47-299 (336)
89 3cvr_A Invasion plasmid antige 99.6 1.8E-14 6.2E-19 153.9 13.6 185 323-539 60-253 (571)
90 2ca6_A RAN GTPase-activating p 99.6 1.6E-15 5.5E-20 155.4 5.0 219 317-545 29-308 (386)
91 2ast_B S-phase kinase-associat 99.5 7.3E-16 2.5E-20 154.7 1.8 222 301-536 71-313 (336)
92 3m19_A Variable lymphocyte rec 99.5 8.4E-14 2.9E-18 133.7 15.8 120 304-429 18-141 (251)
93 4glp_A Monocyte differentiatio 99.5 7.4E-15 2.5E-19 145.8 8.4 209 323-544 65-298 (310)
94 2o6s_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 132.0 11.6 154 349-534 27-183 (208)
95 1m9s_A Internalin B; cell inva 99.5 8E-14 2.8E-18 150.4 12.9 176 346-536 39-217 (605)
96 1jl5_A Outer protein YOPM; leu 99.5 2.3E-13 7.8E-18 142.3 15.7 202 301-530 72-291 (454)
97 4ezg_A Putative uncharacterize 99.5 3E-14 1E-18 131.5 8.0 153 347-530 41-195 (197)
98 2v9t_B SLIT homolog 2 protein 99.5 1.6E-13 5.4E-18 129.0 12.8 141 353-500 14-161 (220)
99 4ezg_A Putative uncharacterize 99.5 5.1E-14 1.7E-18 130.0 9.1 145 369-545 40-186 (197)
100 2o6s_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 128.4 10.6 121 305-431 12-136 (208)
101 3e6j_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 127.4 13.4 149 352-531 21-174 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-13 1.2E-17 126.6 12.8 77 353-431 14-93 (220)
103 4g8a_A TOLL-like receptor 4; l 99.5 4.3E-13 1.5E-17 146.0 14.5 175 347-531 394-582 (635)
104 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.5E-18 131.0 10.6 144 317-476 38-183 (263)
105 2xot_A Amphoterin-induced prot 99.4 2.1E-13 7.1E-18 138.3 8.6 166 353-531 21-204 (361)
106 4ay9_X Follicle-stimulating ho 99.4 3.4E-13 1.2E-17 136.1 9.6 168 323-500 31-211 (350)
107 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 122.3 14.0 103 323-429 41-145 (229)
108 1z7x_W Ribonuclease inhibitor; 99.4 3.2E-14 1.1E-18 149.1 0.9 26 511-536 279-304 (461)
109 3cvr_A Invasion plasmid antige 99.4 2.3E-12 7.7E-17 137.7 14.6 169 301-500 60-239 (571)
110 2v9t_B SLIT homolog 2 protein 99.4 2.1E-12 7.2E-17 121.3 11.9 103 323-429 33-138 (220)
111 4ay9_X Follicle-stimulating ho 99.4 2.9E-12 1E-16 129.3 12.6 212 298-527 28-257 (350)
112 4b8c_D Glucose-repressible alc 99.4 9.2E-14 3.1E-18 153.5 1.6 106 344-453 218-326 (727)
113 1z7x_W Ribonuclease inhibitor; 99.4 4.5E-14 1.6E-18 147.9 -0.9 226 301-536 143-418 (461)
114 2v70_A SLIT-2, SLIT homolog 2 99.4 6.4E-12 2.2E-16 118.0 13.6 122 351-476 33-164 (220)
115 3goz_A Leucine-rich repeat-con 99.4 3.2E-13 1.1E-17 137.0 4.9 228 300-531 22-299 (362)
116 3goz_A Leucine-rich repeat-con 99.4 5.1E-13 1.7E-17 135.5 6.3 201 323-530 23-267 (362)
117 2ell_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 114.5 10.0 102 323-429 25-130 (168)
118 2je0_A Acidic leucine-rich nuc 99.3 1.9E-12 6.4E-17 113.6 8.2 127 348-499 15-148 (149)
119 2je0_A Acidic leucine-rich nuc 99.3 2E-12 6.8E-17 113.4 8.4 119 323-450 18-147 (149)
120 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.6E-17 116.0 7.9 128 348-500 22-156 (168)
121 2xot_A Amphoterin-induced prot 99.3 4.5E-12 1.5E-16 128.5 9.0 119 305-429 23-146 (361)
122 3ogk_B Coronatine-insensitive 99.3 1.1E-12 3.7E-17 142.0 3.4 126 300-428 112-252 (592)
123 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-11 4E-16 111.8 9.7 102 323-430 20-124 (176)
124 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.5E-17 143.6 3.7 118 355-476 206-327 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.2 6.3E-12 2.1E-16 113.6 5.8 131 344-500 13-149 (176)
126 1w8a_A SLIT protein; signaling 99.2 3.6E-11 1.2E-15 110.3 10.5 118 353-476 11-137 (192)
127 3ogk_B Coronatine-insensitive 99.2 3E-12 1E-16 138.5 3.7 101 302-405 140-252 (592)
128 2wfh_A SLIT homolog 2 protein 99.2 6.7E-11 2.3E-15 108.6 11.9 75 353-429 13-88 (193)
129 1w8a_A SLIT protein; signaling 99.2 4.4E-11 1.5E-15 109.6 10.3 125 303-432 11-139 (192)
130 1dce_A Protein (RAB geranylger 99.2 2.6E-11 8.8E-16 130.0 9.9 96 352-453 443-543 (567)
131 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 105.6 12.4 124 303-432 10-137 (177)
132 2wfh_A SLIT homolog 2 protein 99.2 1E-10 3.5E-15 107.3 11.9 103 323-430 32-137 (193)
133 1dce_A Protein (RAB geranylger 99.2 3.3E-11 1.1E-15 129.2 9.8 149 344-498 403-567 (567)
134 1ds9_A Outer arm dynein; leuci 99.2 6.8E-13 2.3E-17 122.5 -4.4 83 345-429 43-125 (198)
135 1ds9_A Outer arm dynein; leuci 99.1 3.9E-12 1.3E-16 117.3 -1.7 140 352-498 25-181 (198)
136 1w5s_A Origin recognition comp 99.1 2.2E-10 7.7E-15 117.9 9.4 142 49-196 23-192 (412)
137 2p1m_B Transport inhibitor res 99.1 1.7E-11 5.8E-16 132.5 0.7 192 300-498 105-345 (594)
138 2o6r_A Variable lymphocyte rec 99.1 1.1E-09 3.8E-14 98.7 12.1 80 350-429 28-110 (177)
139 2r9u_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 99.6 10.1 83 350-432 33-118 (174)
140 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 98.0 10.0 101 325-432 12-115 (170)
141 2qby_B CDC6 homolog 3, cell di 99.0 6.1E-10 2.1E-14 113.5 8.9 140 49-194 21-175 (384)
142 2r9u_A Variable lymphocyte rec 99.0 2.4E-09 8.1E-14 96.3 11.0 111 303-419 15-128 (174)
143 2p1m_B Transport inhibitor res 99.0 4.2E-11 1.4E-15 129.5 -1.2 214 318-544 103-376 (594)
144 3sb4_A Hypothetical leucine ri 98.9 9.3E-10 3.2E-14 109.8 6.6 96 442-545 225-326 (329)
145 1fnn_A CDC6P, cell division co 98.9 6.9E-09 2.4E-13 105.8 12.9 144 49-197 18-173 (389)
146 2v1u_A Cell division control p 98.9 2.9E-09 9.9E-14 108.4 10.1 140 49-194 20-178 (387)
147 3g39_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 93.3 10.6 105 303-413 12-119 (170)
148 2qen_A Walker-type ATPase; unk 98.9 1.9E-09 6.5E-14 108.2 8.0 133 49-194 13-175 (350)
149 2qby_A CDC6 homolog 1, cell di 98.8 3E-09 1E-13 108.2 6.4 144 49-197 21-177 (386)
150 2fna_A Conserved hypothetical 98.8 1.1E-08 3.6E-13 102.9 8.4 132 49-194 14-181 (357)
151 1njg_A DNA polymerase III subu 98.7 3.6E-08 1.2E-12 93.0 10.1 137 49-194 24-167 (250)
152 2chg_A Replication factor C sm 98.7 6.2E-08 2.1E-12 90.1 11.1 123 49-194 18-143 (226)
153 3sb4_A Hypothetical leucine ri 98.7 3.7E-08 1.3E-12 98.1 9.3 205 299-523 48-328 (329)
154 4fdw_A Leucine rich hypothetic 98.6 1.8E-07 6.2E-12 95.6 13.3 196 323-539 158-368 (401)
155 2ifg_A High affinity nerve gro 98.6 5.1E-08 1.7E-12 97.8 9.0 93 337-432 21-116 (347)
156 3un9_A NLR family member X1; l 98.6 2E-09 6.7E-14 109.2 -1.8 40 461-500 207-248 (372)
157 4fdw_A Leucine rich hypothetic 98.6 2.5E-07 8.5E-12 94.6 13.9 203 323-544 136-349 (401)
158 2ifg_A High affinity nerve gro 98.6 7.1E-08 2.4E-12 96.7 9.6 84 323-410 32-117 (347)
159 1sxj_B Activator 1 37 kDa subu 98.5 2E-07 6.7E-12 92.3 7.7 123 49-194 22-148 (323)
160 3un9_A NLR family member X1; l 98.4 1.4E-08 4.7E-13 102.9 -2.0 165 350-536 72-259 (372)
161 3te6_A Regulatory protein SIR3 98.4 4.6E-07 1.6E-11 88.8 8.7 111 50-165 22-143 (318)
162 2ra8_A Uncharacterized protein 98.4 4.1E-07 1.4E-11 91.4 7.2 170 346-537 135-328 (362)
163 1iqp_A RFCS; clamp loader, ext 98.3 7.5E-07 2.6E-11 88.2 6.1 120 49-194 26-151 (327)
164 1jbk_A CLPB protein; beta barr 98.2 9.1E-07 3.1E-11 80.0 5.1 43 49-93 23-65 (195)
165 3n70_A Transport activator; si 98.1 7.1E-06 2.4E-10 70.9 7.3 46 49-94 2-47 (145)
166 1jr3_A DNA polymerase III subu 98.0 9.3E-06 3.2E-10 81.9 8.8 138 49-194 17-160 (373)
167 2chq_A Replication factor C sm 98.0 4.2E-06 1.5E-10 82.4 5.3 120 49-194 18-143 (319)
168 2p65_A Hypothetical protein PF 98.0 3.9E-06 1.3E-10 75.4 3.8 43 49-93 23-65 (187)
169 3h4m_A Proteasome-activating n 97.9 4.8E-06 1.6E-10 80.8 4.4 45 49-93 18-73 (285)
170 2ra8_A Uncharacterized protein 97.9 4.7E-06 1.6E-10 83.7 3.9 159 318-500 137-316 (362)
171 3syl_A Protein CBBX; photosynt 97.9 1.1E-05 3.7E-10 79.2 6.2 124 49-194 32-180 (309)
172 3u61_B DNA polymerase accessor 97.9 1.8E-05 6.2E-10 78.3 7.5 119 49-194 27-147 (324)
173 3co5_A Putative two-component 97.8 7.5E-06 2.6E-10 70.6 3.5 46 49-94 5-50 (143)
174 3rw6_A Nuclear RNA export fact 97.8 1.8E-05 6.3E-10 75.5 6.4 81 346-427 166-259 (267)
175 3ec2_A DNA replication protein 97.8 1E-05 3.5E-10 72.6 4.1 122 49-193 11-143 (180)
176 1sxj_D Activator 1 41 kDa subu 97.8 4.3E-05 1.5E-09 76.3 7.8 132 49-193 38-173 (353)
177 1sxj_E Activator 1 40 kDa subu 97.7 3E-05 1E-09 77.6 6.1 43 49-93 15-58 (354)
178 1d2n_A N-ethylmaleimide-sensit 97.7 9.8E-05 3.3E-09 71.0 9.3 45 49-93 34-86 (272)
179 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00023 7.8E-09 70.2 12.0 45 49-93 13-67 (322)
180 2qz4_A Paraplegin; AAA+, SPG7, 97.7 3.2E-05 1.1E-09 73.8 5.2 45 49-93 7-61 (262)
181 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.4E-10 71.8 2.8 81 346-426 32-128 (185)
182 2w58_A DNAI, primosome compone 97.7 6.4E-05 2.2E-09 68.7 6.9 122 49-192 26-158 (202)
183 3eie_A Vacuolar protein sortin 97.7 4.1E-05 1.4E-09 75.7 5.9 45 49-93 19-73 (322)
184 1io0_A Tropomodulin; LRR prote 97.6 1.6E-05 5.5E-10 71.8 2.4 107 323-430 37-162 (185)
185 1hqc_A RUVB; extended AAA-ATPa 97.6 2.7E-05 9.2E-10 76.9 4.0 45 49-93 13-60 (324)
186 2z4s_A Chromosomal replication 97.6 5.2E-05 1.8E-09 78.3 6.1 122 49-193 106-237 (440)
187 3e4g_A ATP synthase subunit S, 97.6 4.2E-05 1.5E-09 67.8 4.4 79 351-429 62-149 (176)
188 3uk6_A RUVB-like 2; hexameric 97.6 0.00045 1.5E-08 69.3 12.6 45 49-93 45-92 (368)
189 3d8b_A Fidgetin-like protein 1 97.6 0.00011 3.6E-09 73.8 7.4 45 49-93 85-139 (357)
190 3cf0_A Transitional endoplasmi 97.6 0.00018 6.1E-09 70.3 8.8 45 49-93 16-71 (301)
191 1sxj_A Activator 1 95 kDa subu 97.5 0.00023 7.8E-09 75.1 9.8 45 49-93 40-99 (516)
192 2zan_A Vacuolar protein sortin 97.5 0.00034 1.2E-08 72.2 10.3 45 49-93 135-189 (444)
193 3pfi_A Holliday junction ATP-d 97.5 0.00019 6.6E-09 71.2 8.1 45 49-93 30-77 (338)
194 2gno_A DNA polymerase III, gam 97.4 0.00071 2.4E-08 66.0 11.3 119 52-193 1-122 (305)
195 3vfd_A Spastin; ATPase, microt 97.4 0.00034 1.2E-08 70.9 9.3 45 49-93 116-170 (389)
196 3b9p_A CG5977-PA, isoform A; A 97.4 0.00028 9.6E-09 68.6 8.3 45 49-93 22-76 (297)
197 1sxj_C Activator 1 40 kDa subu 97.4 0.0002 6.9E-09 71.2 7.2 43 49-93 26-68 (340)
198 3pvs_A Replication-associated 97.4 0.0002 6.8E-09 73.8 7.0 43 49-93 27-72 (447)
199 3rw6_A Nuclear RNA export fact 97.4 0.00012 4E-09 69.9 4.6 62 370-432 167-233 (267)
200 2qp9_X Vacuolar protein sortin 97.4 0.00023 7.8E-09 71.3 6.9 45 49-93 52-106 (355)
201 1l8q_A Chromosomal replication 97.4 0.00014 4.7E-09 71.8 5.2 121 49-192 12-140 (324)
202 1a5t_A Delta prime, HOLB; zinc 97.4 0.001 3.4E-08 66.0 11.5 114 55-194 9-149 (334)
203 2kjq_A DNAA-related protein; s 97.4 5.9E-05 2E-09 65.4 2.0 23 71-93 36-58 (149)
204 4fcw_A Chaperone protein CLPB; 97.3 0.00061 2.1E-08 66.6 9.6 61 49-111 18-85 (311)
205 2bjv_A PSP operon transcriptio 97.3 0.00028 9.6E-09 67.4 7.0 46 49-94 7-52 (265)
206 1ojl_A Transcriptional regulat 97.2 0.00051 1.7E-08 67.1 7.1 45 49-93 3-47 (304)
207 2cvh_A DNA repair and recombin 97.2 0.0012 4.2E-08 60.7 9.2 89 71-165 20-116 (220)
208 3pxg_A Negative regulator of g 97.2 0.00041 1.4E-08 72.2 6.2 43 49-93 181-223 (468)
209 1lv7_A FTSH; alpha/beta domain 97.1 0.00054 1.8E-08 65.1 6.5 45 49-93 13-67 (257)
210 2r62_A Cell division protease 97.1 0.00012 4.2E-09 70.0 1.5 45 49-93 12-66 (268)
211 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0026 9.1E-08 70.3 12.4 43 49-93 187-229 (758)
212 3hu3_A Transitional endoplasmi 97.1 0.00058 2E-08 71.1 6.6 45 49-93 205-260 (489)
213 2ce7_A Cell division protein F 97.0 0.00095 3.2E-08 69.1 7.4 93 49-165 17-119 (476)
214 1qvr_A CLPB protein; coiled co 97.0 0.00068 2.3E-08 76.0 6.6 43 49-93 171-213 (854)
215 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00037 1.3E-08 67.7 3.8 69 71-165 123-193 (331)
216 4fs7_A Uncharacterized protein 97.0 0.0037 1.3E-07 63.3 11.5 156 373-544 230-392 (394)
217 4gt6_A Cell surface protein; l 97.0 0.015 5.3E-07 58.6 15.7 61 317-381 84-145 (394)
218 3e4g_A ATP synthase subunit S, 96.9 0.00026 9E-09 62.7 1.6 82 373-476 61-150 (176)
219 3pxi_A Negative regulator of g 96.8 0.0011 3.9E-08 73.2 6.2 43 49-93 181-223 (758)
220 4fs7_A Uncharacterized protein 96.8 0.0054 1.9E-07 62.0 10.6 75 461-544 293-370 (394)
221 3bos_A Putative DNA replicatio 96.7 0.0011 3.7E-08 61.9 4.7 58 49-110 29-89 (242)
222 4b4t_J 26S protease regulatory 96.7 0.00079 2.7E-08 67.6 3.7 51 49-101 149-210 (405)
223 4b4t_L 26S protease subunit RP 96.7 0.0012 4E-08 67.4 4.6 50 49-100 182-242 (437)
224 3hr8_A Protein RECA; alpha and 96.7 0.0034 1.2E-07 62.2 7.9 88 71-165 61-150 (356)
225 3lw7_A Adenylate kinase relate 96.7 0.0081 2.8E-07 52.7 9.7 20 72-91 2-21 (179)
226 4b4t_K 26S protease regulatory 96.6 0.0012 4.3E-08 67.0 4.6 51 49-101 173-234 (428)
227 4gp7_A Metallophosphoesterase; 96.6 0.00046 1.6E-08 61.2 1.2 54 144-197 91-163 (171)
228 3cf2_A TER ATPase, transitiona 96.6 0.0038 1.3E-07 68.5 8.6 93 49-165 205-308 (806)
229 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0037 1.3E-07 57.9 7.3 118 71-193 23-168 (235)
230 2b8t_A Thymidine kinase; deoxy 96.6 0.0011 3.7E-08 61.3 3.4 114 71-194 12-127 (223)
231 1qvr_A CLPB protein; coiled co 96.6 0.0024 8.2E-08 71.6 6.9 45 49-93 559-610 (854)
232 3pxi_A Negative regulator of g 96.6 0.0028 9.6E-08 70.1 7.3 45 49-93 492-543 (758)
233 4b4t_H 26S protease regulatory 96.6 0.00098 3.3E-08 67.9 3.2 51 49-101 210-271 (467)
234 2cbz_A Multidrug resistance-as 96.6 0.0098 3.4E-07 55.6 9.9 55 143-197 134-193 (237)
235 1odf_A YGR205W, hypothetical 3 96.5 0.014 4.9E-07 56.2 11.1 55 68-124 28-85 (290)
236 4b4t_M 26S protease regulatory 96.5 0.0015 5E-08 66.6 3.9 51 49-101 182-243 (434)
237 2z43_A DNA repair and recombin 96.5 0.0046 1.6E-07 60.8 7.4 94 71-165 107-214 (324)
238 2pze_A Cystic fibrosis transme 96.4 0.025 8.4E-07 52.5 11.8 57 141-197 135-194 (229)
239 3m6a_A ATP-dependent protease 96.4 0.0048 1.7E-07 65.2 7.7 45 49-93 82-130 (543)
240 1n0w_A DNA repair protein RAD5 96.4 0.0088 3E-07 55.8 8.8 94 71-165 24-130 (243)
241 1ypw_A Transitional endoplasmi 96.4 0.003 1E-07 70.0 5.8 50 49-100 205-265 (806)
242 1sgw_A Putative ABC transporte 96.3 0.009 3.1E-07 54.8 8.0 126 72-197 36-197 (214)
243 3jvv_A Twitching mobility prot 96.3 0.01 3.5E-07 59.0 8.9 111 71-197 123-235 (356)
244 1rz3_A Hypothetical protein rb 96.3 0.0034 1.1E-07 57.1 5.0 41 53-93 3-44 (201)
245 2i1q_A DNA repair and recombin 96.3 0.0055 1.9E-07 60.2 6.9 108 57-165 84-215 (322)
246 3c8u_A Fructokinase; YP_612366 96.3 0.0021 7.3E-08 58.8 3.5 38 56-93 7-44 (208)
247 1in4_A RUVB, holliday junction 96.3 0.0017 6E-08 64.2 3.0 45 49-93 26-73 (334)
248 4gt6_A Cell surface protein; l 96.3 0.033 1.1E-06 56.2 12.6 60 461-528 307-369 (394)
249 1v5w_A DMC1, meiotic recombina 96.3 0.0092 3.2E-07 59.1 8.3 95 70-165 121-230 (343)
250 4b4t_I 26S protease regulatory 96.2 0.0023 7.8E-08 64.6 3.6 51 49-101 183-244 (437)
251 2pjz_A Hypothetical protein ST 96.2 0.022 7.4E-07 54.1 10.2 120 72-197 31-189 (263)
252 1vpl_A ABC transporter, ATP-bi 96.2 0.022 7.7E-07 53.7 10.3 127 71-197 41-210 (256)
253 2zr9_A Protein RECA, recombina 96.2 0.009 3.1E-07 59.3 7.7 88 71-165 61-150 (349)
254 2dhr_A FTSH; AAA+ protein, hex 96.2 0.011 3.9E-07 61.3 8.8 45 49-93 32-86 (499)
255 1vma_A Cell division protein F 96.2 0.0072 2.5E-07 58.8 6.6 92 70-165 103-197 (306)
256 4g1u_C Hemin import ATP-bindin 96.1 0.028 9.6E-07 53.4 10.4 127 71-197 37-212 (266)
257 1xp8_A RECA protein, recombina 96.1 0.012 4.1E-07 58.7 8.0 105 54-165 56-163 (366)
258 1ofh_A ATP-dependent HSL prote 96.1 0.0019 6.3E-08 62.9 2.1 45 49-93 16-72 (310)
259 3io5_A Recombination and repai 96.0 0.015 5E-07 56.3 7.9 87 72-165 29-122 (333)
260 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0047 1.6E-07 68.3 4.8 45 49-93 459-510 (758)
261 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.011 3.7E-07 61.6 7.1 41 49-93 23-63 (500)
262 1qhx_A CPT, protein (chloramph 95.9 0.0033 1.1E-07 55.7 2.8 22 72-93 4-25 (178)
263 3kb2_A SPBC2 prophage-derived 95.9 0.0031 1.1E-07 55.4 2.5 22 72-93 2-23 (173)
264 3kl4_A SRP54, signal recogniti 95.9 0.018 6.2E-07 58.6 8.4 24 70-93 96-119 (433)
265 3hws_A ATP-dependent CLP prote 95.9 0.0042 1.4E-07 62.2 3.7 45 49-93 16-73 (363)
266 1u94_A RECA protein, recombina 95.9 0.01 3.6E-07 58.9 6.4 88 71-165 63-152 (356)
267 3e70_C DPA, signal recognition 95.9 0.018 6.2E-07 56.5 8.0 24 70-93 128-151 (328)
268 2nq2_C Hypothetical ABC transp 95.9 0.022 7.4E-07 53.7 8.3 126 72-197 32-193 (253)
269 1zp6_A Hypothetical protein AT 95.8 0.005 1.7E-07 55.2 3.4 23 71-93 9-31 (191)
270 2px0_A Flagellar biosynthesis 95.8 0.019 6.5E-07 55.5 7.6 86 70-163 104-191 (296)
271 1g5t_A COB(I)alamin adenosyltr 95.8 0.0077 2.6E-07 54.0 4.4 121 71-193 28-163 (196)
272 3vaa_A Shikimate kinase, SK; s 95.7 0.0043 1.5E-07 56.2 2.7 23 71-93 25-47 (199)
273 1pzn_A RAD51, DNA repair and r 95.7 0.018 6.3E-07 57.1 7.4 95 70-165 130-242 (349)
274 3rfe_A Platelet glycoprotein I 95.7 0.019 6.6E-07 48.0 6.5 53 353-407 11-66 (130)
275 2eyu_A Twitching motility prot 95.6 0.013 4.4E-07 55.6 5.8 113 71-197 25-137 (261)
276 2c9o_A RUVB-like 1; hexameric 95.6 0.0087 3E-07 61.8 5.0 45 49-93 38-85 (456)
277 3rfe_A Platelet glycoprotein I 95.6 0.015 5.1E-07 48.7 5.4 54 376-431 11-67 (130)
278 1ly1_A Polynucleotide kinase; 95.6 0.0063 2.1E-07 53.8 3.2 22 72-93 3-24 (181)
279 1fx0_B ATP synthase beta chain 95.6 0.019 6.5E-07 58.8 7.0 103 60-165 155-277 (498)
280 2bbs_A Cystic fibrosis transme 95.5 0.073 2.5E-06 51.2 10.7 55 143-197 166-223 (290)
281 1ixz_A ATP-dependent metallopr 95.5 0.0063 2.2E-07 57.4 3.1 44 49-93 17-71 (254)
282 3trf_A Shikimate kinase, SK; a 95.5 0.0056 1.9E-07 54.6 2.6 23 71-93 5-27 (185)
283 1kgd_A CASK, peripheral plasma 95.5 0.0061 2.1E-07 54.3 2.8 23 71-93 5-27 (180)
284 1kag_A SKI, shikimate kinase I 95.5 0.0051 1.7E-07 54.2 2.2 22 72-93 5-26 (173)
285 2x8a_A Nuclear valosin-contain 95.5 0.007 2.4E-07 58.0 3.3 44 49-93 11-66 (274)
286 2r44_A Uncharacterized protein 95.5 0.0071 2.4E-07 59.6 3.4 41 49-93 28-68 (331)
287 1zuh_A Shikimate kinase; alpha 95.5 0.006 2.1E-07 53.5 2.6 24 70-93 6-29 (168)
288 3uie_A Adenylyl-sulfate kinase 95.4 0.008 2.7E-07 54.5 3.4 23 71-93 25-47 (200)
289 3tui_C Methionine import ATP-b 95.4 0.06 2.1E-06 53.4 9.8 127 71-197 54-228 (366)
290 1nks_A Adenylate kinase; therm 95.4 0.0081 2.8E-07 53.7 3.2 22 72-93 2-23 (194)
291 1ex7_A Guanylate kinase; subst 95.4 0.0061 2.1E-07 54.6 2.3 22 72-93 2-23 (186)
292 1knq_A Gluconate kinase; ALFA/ 95.3 0.011 3.6E-07 52.2 3.8 23 71-93 8-30 (175)
293 3bh0_A DNAB-like replicative h 95.3 0.046 1.6E-06 53.3 8.7 69 52-125 50-118 (315)
294 2qt1_A Nicotinamide riboside k 95.3 0.011 3.6E-07 53.9 3.7 24 70-93 20-43 (207)
295 1z47_A CYSA, putative ABC-tran 95.3 0.055 1.9E-06 53.5 9.1 127 71-197 41-210 (355)
296 3d31_A Sulfate/molybdate ABC t 95.3 0.061 2.1E-06 53.1 9.4 125 71-197 26-192 (348)
297 2bdt_A BH3686; alpha-beta prot 95.3 0.0098 3.3E-07 53.2 3.4 22 72-93 3-24 (189)
298 3lda_A DNA repair protein RAD5 95.3 0.053 1.8E-06 54.7 9.1 94 71-165 178-284 (400)
299 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0096 3.3E-07 58.6 3.5 43 51-93 2-46 (359)
300 3dm5_A SRP54, signal recogniti 95.2 0.027 9.1E-07 57.4 6.8 24 70-93 99-122 (443)
301 1iy2_A ATP-dependent metallopr 95.2 0.0082 2.8E-07 57.5 3.0 44 49-93 41-95 (278)
302 3t61_A Gluconokinase; PSI-biol 95.2 0.0063 2.2E-07 55.2 2.0 23 71-93 18-40 (202)
303 3t15_A Ribulose bisphosphate c 95.2 0.0079 2.7E-07 58.2 2.8 29 70-100 35-63 (293)
304 2xxa_A Signal recognition part 95.2 0.073 2.5E-06 54.3 10.1 37 57-93 79-122 (433)
305 2if2_A Dephospho-COA kinase; a 95.2 0.0085 2.9E-07 54.4 2.8 22 72-93 2-23 (204)
306 2orw_A Thymidine kinase; TMTK, 95.2 0.0034 1.2E-07 56.3 0.0 22 72-93 4-25 (184)
307 1uf9_A TT1252 protein; P-loop, 95.2 0.011 3.8E-07 53.4 3.5 24 70-93 7-30 (203)
308 3asz_A Uridine kinase; cytidin 95.2 0.011 3.8E-07 53.9 3.5 24 70-93 5-28 (211)
309 4h09_A Hypothetical leucine ri 95.2 0.41 1.4E-05 47.6 15.5 54 486-544 281-337 (379)
310 2rhm_A Putative kinase; P-loop 95.2 0.011 3.8E-07 52.9 3.4 23 71-93 5-27 (193)
311 3tr0_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 53.8 3.1 22 72-93 8-29 (205)
312 2ze6_A Isopentenyl transferase 95.2 0.01 3.5E-07 56.0 3.3 22 72-93 2-23 (253)
313 2ck3_D ATP synthase subunit be 95.1 0.014 4.9E-07 59.5 4.5 104 59-165 142-264 (482)
314 1j8m_F SRP54, signal recogniti 95.1 0.045 1.6E-06 52.8 7.9 23 71-93 98-120 (297)
315 2ffh_A Protein (FFH); SRP54, s 95.1 0.045 1.5E-06 55.5 8.1 24 70-93 97-120 (425)
316 2yhs_A FTSY, cell division pro 95.1 0.081 2.8E-06 54.4 10.0 42 70-114 292-333 (503)
317 3fwy_A Light-independent proto 95.1 0.011 3.9E-07 57.6 3.5 39 70-110 47-85 (314)
318 4eun_A Thermoresistant glucoki 95.1 0.01 3.4E-07 53.8 2.9 23 71-93 29-51 (200)
319 1jjv_A Dephospho-COA kinase; P 95.1 0.012 4E-07 53.5 3.4 22 72-93 3-24 (206)
320 1sky_E F1-ATPase, F1-ATP synth 95.1 0.041 1.4E-06 56.3 7.6 50 72-123 152-203 (473)
321 3a00_A Guanylate kinase, GMP k 95.1 0.0085 2.9E-07 53.6 2.3 22 72-93 2-23 (186)
322 1uj2_A Uridine-cytidine kinase 95.1 0.011 3.9E-07 55.6 3.3 24 70-93 21-44 (252)
323 1via_A Shikimate kinase; struc 95.1 0.0074 2.5E-07 53.3 1.9 22 72-93 5-26 (175)
324 1kht_A Adenylate kinase; phosp 95.1 0.011 3.6E-07 52.9 2.9 22 72-93 4-25 (192)
325 2qgz_A Helicase loader, putati 95.1 0.015 5.1E-07 56.7 4.2 59 49-109 125-189 (308)
326 1um8_A ATP-dependent CLP prote 95.1 0.012 4.3E-07 59.0 3.8 45 49-93 22-94 (376)
327 3iij_A Coilin-interacting nucl 95.0 0.0076 2.6E-07 53.5 1.9 23 71-93 11-33 (180)
328 2jaq_A Deoxyguanosine kinase; 95.0 0.011 3.8E-07 53.4 2.9 21 73-93 2-22 (205)
329 1ls1_A Signal recognition part 95.0 0.031 1.1E-06 54.0 6.3 90 70-163 97-189 (295)
330 3tau_A Guanylate kinase, GMP k 95.0 0.011 3.9E-07 53.8 3.1 23 71-93 8-30 (208)
331 1ukz_A Uridylate kinase; trans 95.0 0.013 4.5E-07 53.0 3.5 24 70-93 14-37 (203)
332 2c95_A Adenylate kinase 1; tra 95.0 0.012 4.1E-07 52.8 3.1 23 71-93 9-31 (196)
333 1cke_A CK, MSSA, protein (cyti 95.0 0.012 4E-07 54.4 3.0 22 72-93 6-27 (227)
334 2plr_A DTMP kinase, probable t 94.9 0.024 8.3E-07 51.4 5.1 22 72-93 5-26 (213)
335 1tev_A UMP-CMP kinase; ploop, 94.9 0.013 4.6E-07 52.4 3.3 23 71-93 3-25 (196)
336 3tlx_A Adenylate kinase 2; str 94.9 0.015 5.2E-07 54.4 3.8 37 57-93 15-51 (243)
337 2j41_A Guanylate kinase; GMP, 94.9 0.012 4.1E-07 53.4 2.9 23 71-93 6-28 (207)
338 1y63_A LMAJ004144AAA protein; 94.9 0.013 4.4E-07 52.3 3.1 23 71-93 10-32 (184)
339 2qor_A Guanylate kinase; phosp 94.9 0.0099 3.4E-07 54.0 2.3 23 71-93 12-34 (204)
340 1xjc_A MOBB protein homolog; s 94.9 0.017 5.8E-07 50.7 3.7 24 70-93 3-26 (169)
341 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 4.7E-07 55.4 3.4 23 71-93 4-26 (260)
342 1ye8_A Protein THEP1, hypothet 94.9 0.014 4.8E-07 51.9 3.2 22 73-94 2-23 (178)
343 4a74_A DNA repair and recombin 94.9 0.037 1.3E-06 50.9 6.2 45 71-115 25-73 (231)
344 2iyv_A Shikimate kinase, SK; t 94.8 0.0092 3.2E-07 53.1 1.9 22 72-93 3-24 (184)
345 1rj9_A FTSY, signal recognitio 94.8 0.039 1.3E-06 53.5 6.5 24 70-93 101-124 (304)
346 2yvu_A Probable adenylyl-sulfa 94.8 0.015 5E-07 51.9 3.2 24 70-93 12-35 (186)
347 3tqc_A Pantothenate kinase; bi 94.8 0.019 6.5E-07 56.1 4.1 39 55-93 74-114 (321)
348 2vli_A Antibiotic resistance p 94.8 0.0098 3.4E-07 52.8 2.0 23 71-93 5-27 (183)
349 2bbw_A Adenylate kinase 4, AK4 94.8 0.014 4.8E-07 54.7 3.2 23 71-93 27-49 (246)
350 3zvl_A Bifunctional polynucleo 94.8 0.052 1.8E-06 55.2 7.5 24 70-93 257-280 (416)
351 3cm0_A Adenylate kinase; ATP-b 94.8 0.015 5.2E-07 51.7 3.2 23 71-93 4-26 (186)
352 3ice_A Transcription terminati 94.8 0.016 5.5E-07 57.5 3.5 41 71-113 174-216 (422)
353 2grj_A Dephospho-COA kinase; T 94.8 0.017 5.8E-07 52.0 3.4 24 70-93 11-34 (192)
354 3aez_A Pantothenate kinase; tr 94.8 0.017 5.9E-07 56.3 3.7 25 69-93 88-112 (312)
355 2bwj_A Adenylate kinase 5; pho 94.7 0.013 4.6E-07 52.6 2.8 23 71-93 12-34 (199)
356 2ewv_A Twitching motility prot 94.7 0.047 1.6E-06 54.6 7.0 110 71-197 136-248 (372)
357 1g8p_A Magnesium-chelatase 38 94.7 0.012 4E-07 58.3 2.6 43 49-93 25-67 (350)
358 1qf9_A UMP/CMP kinase, protein 94.7 0.016 5.4E-07 51.8 3.2 23 71-93 6-28 (194)
359 1e6c_A Shikimate kinase; phosp 94.7 0.012 4E-07 51.7 2.2 22 72-93 3-24 (173)
360 2hf9_A Probable hydrogenase ni 94.7 0.024 8.2E-07 52.1 4.5 36 57-94 26-61 (226)
361 1lvg_A Guanylate kinase, GMP k 94.7 0.012 4.2E-07 53.2 2.4 22 72-93 5-26 (198)
362 1htw_A HI0065; nucleotide-bind 94.7 0.018 6.2E-07 50.0 3.4 24 70-93 32-55 (158)
363 1gvn_B Zeta; postsegregational 94.7 0.025 8.5E-07 54.5 4.6 24 70-93 32-55 (287)
364 2jeo_A Uridine-cytidine kinase 94.7 0.019 6.6E-07 53.8 3.7 24 70-93 24-47 (245)
365 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.05 1.7E-06 53.5 6.7 108 72-197 172-279 (330)
366 1znw_A Guanylate kinase, GMP k 94.6 0.017 5.8E-07 52.6 3.1 23 71-93 20-42 (207)
367 2pt5_A Shikimate kinase, SK; a 94.6 0.017 5.7E-07 50.5 2.9 21 73-93 2-22 (168)
368 2wsm_A Hydrogenase expression/ 94.6 0.021 7.3E-07 52.3 3.8 39 53-93 14-52 (221)
369 4e22_A Cytidylate kinase; P-lo 94.5 0.018 6.1E-07 54.3 3.2 23 71-93 27-49 (252)
370 1nn5_A Similar to deoxythymidy 94.5 0.022 7.5E-07 51.9 3.7 23 71-93 9-31 (215)
371 3p32_A Probable GTPase RV1496/ 94.5 0.031 1E-06 55.6 5.0 37 57-93 65-101 (355)
372 2cdn_A Adenylate kinase; phosp 94.5 0.018 6.2E-07 52.1 3.0 23 71-93 20-42 (201)
373 2pbr_A DTMP kinase, thymidylat 94.5 0.018 6E-07 51.6 2.9 21 73-93 2-22 (195)
374 2p5t_B PEZT; postsegregational 94.5 0.023 7.9E-07 53.5 3.8 37 57-93 15-54 (253)
375 3tif_A Uncharacterized ABC tra 94.4 0.03 1E-06 52.2 4.4 57 141-197 150-210 (235)
376 1zu4_A FTSY; GTPase, signal re 94.4 0.048 1.6E-06 53.3 6.1 24 70-93 104-127 (320)
377 3ney_A 55 kDa erythrocyte memb 94.4 0.018 6.3E-07 51.9 2.8 24 70-93 18-41 (197)
378 4h09_A Hypothetical leucine ri 94.4 0.22 7.6E-06 49.6 11.2 136 392-540 213-356 (379)
379 2onk_A Molybdate/tungstate ABC 94.4 0.032 1.1E-06 52.1 4.5 123 72-197 25-191 (240)
380 1z6g_A Guanylate kinase; struc 94.4 0.016 5.4E-07 53.4 2.3 23 71-93 23-45 (218)
381 4a1f_A DNAB helicase, replicat 94.4 0.081 2.8E-06 51.9 7.5 51 71-125 46-96 (338)
382 2pcj_A ABC transporter, lipopr 94.4 0.032 1.1E-06 51.5 4.4 56 141-196 145-203 (224)
383 2z0h_A DTMP kinase, thymidylat 94.4 0.042 1.5E-06 49.1 5.2 21 73-93 2-22 (197)
384 2f6r_A COA synthase, bifunctio 94.3 0.024 8.3E-07 54.3 3.7 24 70-93 74-97 (281)
385 3gfo_A Cobalt import ATP-bindi 94.3 0.032 1.1E-06 53.2 4.4 57 141-197 148-208 (275)
386 2f1r_A Molybdopterin-guanine d 94.3 0.015 5.3E-07 51.2 2.0 23 71-93 2-24 (171)
387 3vr4_D V-type sodium ATPase su 94.3 0.016 5.6E-07 58.7 2.3 91 72-164 152-258 (465)
388 1zd8_A GTP:AMP phosphotransfer 94.2 0.02 7E-07 52.8 2.8 23 71-93 7-29 (227)
389 1aky_A Adenylate kinase; ATP:A 94.2 0.022 7.4E-07 52.4 3.0 23 71-93 4-26 (220)
390 1b0u_A Histidine permease; ABC 94.2 0.035 1.2E-06 52.6 4.4 23 71-93 32-54 (262)
391 1vht_A Dephospho-COA kinase; s 94.2 0.026 9E-07 51.7 3.5 23 71-93 4-26 (218)
392 2pez_A Bifunctional 3'-phospho 94.2 0.025 8.6E-07 50.0 3.2 23 71-93 5-27 (179)
393 2j37_W Signal recognition part 94.2 0.14 4.6E-06 53.3 9.1 24 70-93 100-123 (504)
394 1tue_A Replication protein E1; 94.2 0.035 1.2E-06 50.1 4.0 39 54-93 42-80 (212)
395 2wwf_A Thymidilate kinase, put 94.2 0.023 7.8E-07 51.7 2.9 23 71-93 10-32 (212)
396 3umf_A Adenylate kinase; rossm 94.2 0.028 9.6E-07 51.5 3.5 25 69-93 27-51 (217)
397 2ehv_A Hypothetical protein PH 94.1 0.025 8.6E-07 52.8 3.2 23 71-93 30-52 (251)
398 1s96_A Guanylate kinase, GMP k 94.1 0.024 8.3E-07 52.1 2.9 23 71-93 16-38 (219)
399 3nwj_A ATSK2; P loop, shikimat 94.1 0.017 5.7E-07 54.4 1.8 22 72-93 49-70 (250)
400 1gtv_A TMK, thymidylate kinase 94.0 0.013 4.4E-07 53.5 1.0 21 73-93 2-22 (214)
401 1sq5_A Pantothenate kinase; P- 94.0 0.031 1.1E-06 54.4 3.7 24 70-93 79-102 (308)
402 1mv5_A LMRA, multidrug resista 94.0 0.043 1.5E-06 51.4 4.5 23 71-93 28-50 (243)
403 2olj_A Amino acid ABC transpor 94.0 0.042 1.4E-06 52.1 4.4 56 142-197 165-223 (263)
404 1m7g_A Adenylylsulfate kinase; 94.0 0.031 1.1E-06 50.9 3.5 23 71-93 25-47 (211)
405 2v54_A DTMP kinase, thymidylat 94.0 0.027 9.2E-07 50.9 3.0 22 72-93 5-26 (204)
406 1ji0_A ABC transporter; ATP bi 94.0 0.042 1.4E-06 51.3 4.4 23 71-93 32-54 (240)
407 3fb4_A Adenylate kinase; psych 94.0 0.026 9E-07 51.5 2.9 21 73-93 2-22 (216)
408 2ff7_A Alpha-hemolysin translo 93.9 0.043 1.5E-06 51.5 4.4 22 72-93 36-57 (247)
409 3ake_A Cytidylate kinase; CMP 93.9 0.027 9.3E-07 51.0 2.9 21 73-93 4-24 (208)
410 1g41_A Heat shock protein HSLU 93.9 0.033 1.1E-06 56.7 3.8 45 49-93 16-72 (444)
411 1cr0_A DNA primase/helicase; R 93.9 0.071 2.4E-06 51.4 6.1 52 71-126 35-87 (296)
412 1zak_A Adenylate kinase; ATP:A 93.9 0.024 8.1E-07 52.2 2.5 23 71-93 5-27 (222)
413 1g6h_A High-affinity branched- 93.9 0.045 1.5E-06 51.7 4.4 23 71-93 33-55 (257)
414 2i3b_A HCR-ntpase, human cance 93.8 0.026 9E-07 50.6 2.6 21 73-93 3-23 (189)
415 3dl0_A Adenylate kinase; phosp 93.8 0.029 9.9E-07 51.3 2.9 21 73-93 2-22 (216)
416 3lnc_A Guanylate kinase, GMP k 93.8 0.02 6.7E-07 53.1 1.8 23 71-93 27-50 (231)
417 2ixe_A Antigen peptide transpo 93.8 0.047 1.6E-06 52.0 4.4 55 143-197 163-221 (271)
418 3b9q_A Chloroplast SRP recepto 93.8 0.036 1.2E-06 53.7 3.7 24 70-93 99-122 (302)
419 3k1j_A LON protease, ATP-depen 93.8 0.056 1.9E-06 57.9 5.5 41 49-93 42-82 (604)
420 3j16_B RLI1P; ribosome recycli 93.7 0.18 6.1E-06 53.8 9.2 126 72-197 379-532 (608)
421 3l0o_A Transcription terminati 93.7 0.071 2.4E-06 52.9 5.6 52 58-112 163-216 (427)
422 1np6_A Molybdopterin-guanine d 93.7 0.032 1.1E-06 49.3 2.8 23 71-93 6-28 (174)
423 3ozx_A RNAse L inhibitor; ATP 93.7 0.15 5.1E-06 53.6 8.4 54 141-197 143-201 (538)
424 3bk7_A ABC transporter ATP-bin 93.7 0.23 7.7E-06 53.0 9.9 127 71-197 382-536 (607)
425 2yz2_A Putative ABC transporte 93.7 0.05 1.7E-06 51.6 4.4 23 71-93 33-55 (266)
426 3d3q_A TRNA delta(2)-isopenten 93.7 0.033 1.1E-06 54.6 3.2 22 72-93 8-29 (340)
427 3b85_A Phosphate starvation-in 93.6 0.028 9.7E-07 51.2 2.3 22 72-93 23-44 (208)
428 2qi9_C Vitamin B12 import ATP- 93.6 0.056 1.9E-06 50.7 4.5 22 72-93 27-48 (249)
429 1fx0_A ATP synthase alpha chai 93.6 0.064 2.2E-06 55.1 5.1 90 72-165 164-266 (507)
430 3r20_A Cytidylate kinase; stru 93.5 0.036 1.2E-06 51.4 3.0 23 71-93 9-31 (233)
431 2ihy_A ABC transporter, ATP-bi 93.5 0.056 1.9E-06 51.7 4.4 23 71-93 47-69 (279)
432 3b5x_A Lipid A export ATP-bind 93.5 0.18 6.3E-06 53.6 8.8 23 71-93 369-391 (582)
433 2ghi_A Transport protein; mult 93.4 0.058 2E-06 51.0 4.3 23 71-93 46-68 (260)
434 3a8t_A Adenylate isopentenyltr 93.4 0.044 1.5E-06 53.6 3.5 23 71-93 40-62 (339)
435 2dr3_A UPF0273 protein PH0284; 93.4 0.048 1.6E-06 50.7 3.7 39 71-111 23-61 (247)
436 2r9v_A ATP synthase subunit al 93.4 0.06 2.1E-06 55.3 4.6 90 72-165 176-278 (515)
437 2q6t_A DNAB replication FORK h 93.4 0.31 1E-05 49.9 10.1 71 52-126 182-252 (444)
438 1yrb_A ATP(GTP)binding protein 93.3 0.047 1.6E-06 51.4 3.5 24 70-93 13-36 (262)
439 2d2e_A SUFC protein; ABC-ATPas 93.3 0.042 1.5E-06 51.6 3.1 22 72-93 30-51 (250)
440 3be4_A Adenylate kinase; malar 93.3 0.041 1.4E-06 50.4 3.0 22 72-93 6-27 (217)
441 3end_A Light-independent proto 93.3 0.071 2.4E-06 51.7 4.8 41 69-111 39-79 (307)
442 1e4v_A Adenylate kinase; trans 93.2 0.041 1.4E-06 50.2 2.9 21 73-93 2-22 (214)
443 2zu0_C Probable ATP-dependent 93.2 0.044 1.5E-06 52.1 3.2 57 141-197 169-228 (267)
444 3cmu_A Protein RECA, recombina 93.2 0.096 3.3E-06 62.7 6.5 101 57-164 1412-1515(2050)
445 3j16_B RLI1P; ribosome recycli 93.2 0.34 1.2E-05 51.6 10.2 78 118-197 201-285 (608)
446 2xb4_A Adenylate kinase; ATP-b 93.2 0.043 1.5E-06 50.5 2.9 21 73-93 2-22 (223)
447 2r6a_A DNAB helicase, replicat 93.2 0.19 6.4E-06 51.7 8.1 49 71-123 203-252 (454)
448 2og2_A Putative signal recogni 93.2 0.052 1.8E-06 53.8 3.7 24 70-93 156-179 (359)
449 1a7j_A Phosphoribulokinase; tr 93.1 0.023 7.9E-07 54.8 1.1 23 71-93 5-27 (290)
450 1ak2_A Adenylate kinase isoenz 93.1 0.046 1.6E-06 50.7 3.1 23 71-93 16-38 (233)
451 2qe7_A ATP synthase subunit al 93.1 0.09 3.1E-06 53.9 5.4 90 72-165 163-265 (502)
452 3nh6_A ATP-binding cassette SU 93.1 0.06 2.1E-06 52.1 4.0 23 71-93 80-102 (306)
453 1cp2_A CP2, nitrogenase iron p 93.1 0.075 2.6E-06 50.3 4.6 37 72-110 2-38 (269)
454 4eaq_A DTMP kinase, thymidylat 93.1 0.072 2.5E-06 49.3 4.4 24 70-93 25-48 (229)
455 3llm_A ATP-dependent RNA helic 93.1 0.72 2.5E-05 42.5 11.3 93 72-165 77-187 (235)
456 2c61_A A-type ATP synthase non 93.1 0.037 1.3E-06 56.5 2.4 92 72-163 153-258 (469)
457 1ltq_A Polynucleotide kinase; 93.0 0.048 1.7E-06 52.6 3.2 22 72-93 3-24 (301)
458 3crm_A TRNA delta(2)-isopenten 93.0 0.049 1.7E-06 53.0 3.2 22 72-93 6-27 (323)
459 2afh_E Nitrogenase iron protei 92.9 0.079 2.7E-06 50.8 4.5 39 71-111 2-40 (289)
460 1svm_A Large T antigen; AAA+ f 92.9 0.078 2.7E-06 52.9 4.6 24 70-93 168-191 (377)
461 1q57_A DNA primase/helicase; d 92.9 0.24 8.4E-06 51.6 8.6 52 71-126 242-294 (503)
462 3gqb_B V-type ATP synthase bet 92.9 0.03 1E-06 56.8 1.5 93 72-164 148-261 (464)
463 2wji_A Ferrous iron transport 92.9 0.073 2.5E-06 46.1 3.9 23 72-94 4-26 (165)
464 1q3t_A Cytidylate kinase; nucl 92.9 0.051 1.7E-06 50.5 3.0 24 70-93 15-38 (236)
465 1tq4_A IIGP1, interferon-induc 92.8 0.049 1.7E-06 55.1 3.0 24 70-93 68-91 (413)
466 1oix_A RAS-related protein RAB 92.8 0.054 1.9E-06 48.4 3.0 24 71-94 29-52 (191)
467 3exa_A TRNA delta(2)-isopenten 92.7 0.058 2E-06 52.1 3.2 23 71-93 3-25 (322)
468 2vp4_A Deoxynucleoside kinase; 92.6 0.052 1.8E-06 50.2 2.7 24 70-93 19-42 (230)
469 2zej_A Dardarin, leucine-rich 92.6 0.058 2E-06 47.7 2.9 22 73-94 4-25 (184)
470 2dyk_A GTP-binding protein; GT 92.6 0.069 2.3E-06 45.7 3.3 23 72-94 2-24 (161)
471 2v9p_A Replication protein E1; 92.6 0.061 2.1E-06 52.0 3.1 23 71-93 126-148 (305)
472 1pgv_A TMD-1, tropomodulin TMD 92.6 0.11 3.9E-06 46.5 4.7 84 345-428 36-135 (197)
473 3fvq_A Fe(3+) IONS import ATP- 92.5 0.094 3.2E-06 51.9 4.5 123 71-197 30-203 (359)
474 1u0j_A DNA replication protein 92.5 0.11 3.6E-06 49.1 4.6 36 58-93 91-126 (267)
475 1nlf_A Regulatory protein REPA 92.5 0.061 2.1E-06 51.4 3.1 23 71-93 30-52 (279)
476 2p67_A LAO/AO transport system 92.4 0.11 3.8E-06 51.2 5.0 35 59-93 44-78 (341)
477 2iw3_A Elongation factor 3A; a 92.4 0.46 1.6E-05 53.2 10.3 120 72-197 462-609 (986)
478 3sr0_A Adenylate kinase; phosp 92.4 0.066 2.2E-06 48.7 2.9 85 73-174 2-94 (206)
479 3qf4_A ABC transporter, ATP-bi 92.3 0.27 9.3E-06 52.3 8.1 23 71-93 369-391 (587)
480 2f9l_A RAB11B, member RAS onco 92.3 0.062 2.1E-06 48.2 2.7 24 71-94 5-28 (199)
481 2v3c_C SRP54, signal recogniti 92.3 0.069 2.4E-06 54.4 3.3 23 71-93 99-121 (432)
482 3kta_A Chromosome segregation 92.3 0.075 2.6E-06 46.9 3.2 22 72-93 27-48 (182)
483 3e1s_A Exodeoxyribonuclease V, 92.3 0.2 7E-06 53.0 7.0 22 72-93 205-226 (574)
484 3foz_A TRNA delta(2)-isopenten 92.2 0.075 2.5E-06 51.2 3.2 24 70-93 9-32 (316)
485 2ocp_A DGK, deoxyguanosine kin 92.2 0.079 2.7E-06 49.3 3.4 23 71-93 2-24 (241)
486 3sop_A Neuronal-specific septi 92.1 0.074 2.5E-06 50.6 3.1 21 73-93 4-24 (270)
487 4dzz_A Plasmid partitioning pr 92.1 0.1 3.5E-06 46.9 4.0 44 71-116 1-45 (206)
488 2qm8_A GTPase/ATPase; G protei 92.1 0.13 4.5E-06 50.5 5.0 35 59-93 43-77 (337)
489 3cmw_A Protein RECA, recombina 92.1 0.17 5.9E-06 59.8 6.6 107 52-165 363-472 (1706)
490 4edh_A DTMP kinase, thymidylat 92.1 0.19 6.5E-06 45.8 5.7 23 71-93 6-28 (213)
491 1nij_A Hypothetical protein YJ 92.0 0.069 2.3E-06 52.2 2.8 25 70-94 3-27 (318)
492 3cf2_A TER ATPase, transitiona 92.0 0.18 6.2E-06 55.3 6.3 93 49-165 478-581 (806)
493 1fzq_A ADP-ribosylation factor 91.9 0.1 3.6E-06 45.9 3.7 25 70-94 15-39 (181)
494 2qmh_A HPR kinase/phosphorylas 91.9 0.087 3E-06 47.2 3.0 22 72-93 35-56 (205)
495 2wjg_A FEOB, ferrous iron tran 91.9 0.1 3.4E-06 46.1 3.5 24 71-94 7-30 (188)
496 2lkc_A Translation initiation 91.9 0.12 4.1E-06 45.0 4.0 25 70-94 7-31 (178)
497 3fdi_A Uncharacterized protein 91.8 0.084 2.9E-06 47.7 3.0 25 72-98 7-31 (201)
498 3cmu_A Protein RECA, recombina 91.8 0.22 7.4E-06 59.8 7.1 109 50-165 361-472 (2050)
499 3rlf_A Maltose/maltodextrin im 91.8 0.13 4.5E-06 51.2 4.6 23 71-93 29-51 (381)
500 2ce2_X GTPase HRAS; signaling 91.8 0.08 2.7E-06 45.3 2.7 22 73-94 5-26 (166)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=5e-32 Score=290.77 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=177.2
Q ss_pred eeecccHHHHHHHHHcC-CCCcEEEEEEcCCCChHHHHHHHHhc--CcccccccceeEEEEecCCC--CHHHHHHHHHHH
Q 039831 51 SEFERGREKFFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYN--NNYVKFYFDCLAWVRVSLLY--DFGKILEDIIKS 125 (545)
Q Consensus 51 vGr~~~~~~i~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~ 125 (545)
|||++++++|.++|..+ +.+.+||+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +..+++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 34689999999999999999999998 67999999999999999885 899999999999
Q ss_pred hCCCCC---ccccCCCCHHHHHHHHHHhcCCc-eEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHhcc--
Q 039831 126 VMPPSR---VRVIIGKDYQFKKSILRDYLTNK-KYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLTSL-- 199 (545)
Q Consensus 126 l~~~~~---~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~L-- 199 (545)
++.... ....+..+.+++...+++.|+++ |+||||||||+ .+++ .+.. .+||+||||||++.++...
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 987532 11233446678899999999996 99999999999 7654 2211 1699999999999987641
Q ss_pred ------------------------------cc-cccccc-------cchHHHhhhhhhccchHHHHHHHHHc----C-C-
Q 039831 200 ------------------------------EM-ENGEKI-------RLDSVLIGGPLIRLKHEAWQFFILHY----G-S- 235 (545)
Q Consensus 200 ------------------------------~l-~~~~~i-------Plal~~~g~~L~~~~~~~w~~~~~~~----~-~- 235 (545)
++ +++.+| ||||+++|+.++.+. .+|...+... . .
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVG 362 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSST
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHH
Confidence 01 123333 999999999998774 2333333321 0 0
Q ss_pred ---CCc---hh----H--Hhc-----------ccce-----EEcCcc-ceeec--CCCCC-----ChHHHHHHHHHHHHH
Q 039831 236 ---MPL---ET----L--TQG-----------KFGL-----TVERQI-FSVAE--GFIPY-----NSEETAEHYLKQLIH 279 (545)
Q Consensus 236 ---~~~---~~----l--~~~-----------y~~l-----~i~~~~-~wia~--g~~~~-----~~~~~~~~~l~~L~~ 279 (545)
.+. ++ + ++. ||++ .|+ . +|+|+ ||+.. +.+++++ ++++|++
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~ 439 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSK 439 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-HHHHTTT
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHH
Confidence 000 22 2 333 8887 222 3 99999 99975 4677787 9999999
Q ss_pred CCCcccccc-----eEecccccC
Q 039831 280 RGFIQATGF-----VWMHDVDEE 297 (545)
Q Consensus 280 ~sli~~~~~-----~~~hdlv~~ 297 (545)
+||++.... |+|||++++
T Consensus 440 rsLl~~~~~~~~~~~~mHdlv~~ 462 (549)
T 2a5y_B 440 RGALLSGKRMPVLTFKIDHIIHM 462 (549)
T ss_dssp BSSCSEEECSSSCEEECCHHHHH
T ss_pred cCCeeEecCCCceEEEeChHHHH
Confidence 999997542 999999998
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=1.3e-26 Score=253.67 Aligned_cols=232 Identities=15% Similarity=0.102 Sum_probs=169.9
Q ss_pred eeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 50 ISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDC-LAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 50 ~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
.|||++++++|.++|...+ +.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998643 4799999999999999999999987788999986 8999999999988888887775422
Q ss_pred CC---Ccc-c---cCCCCHHHHHHHHHHhc---CCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHhc
Q 039831 129 PS---RVR-V---IIGKDYQFKKSILRDYL---TNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLTS 198 (545)
Q Consensus 129 ~~---~~~-~---~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~ 198 (545)
.. ... + ....+.+++.+.+++.+ .+||+||||||||+ .+.|+.+. +|||||||||++.++..
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 11 100 0 00113355667777765 78999999999999 88887752 58999999999988732
Q ss_pred -----------------c------------------cc--cccccccchHHHhhhhhhccc--hHHHHHH-----HHHcC
Q 039831 199 -----------------L------------------EM--ENGEKIRLDSVLIGGPLIRLK--HEAWQFF-----ILHYG 234 (545)
Q Consensus 199 -----------------L------------------~l--~~~~~iPlal~~~g~~L~~~~--~~~w~~~-----~~~~~ 234 (545)
| ++ ++++.+||||+++|+.|+.+. ..+|... ...+.
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLe 360 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHH
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHH
Confidence 1 11 233344999999999999884 3388653 00000
Q ss_pred CCCchhH-------Hhcccce-----EEcCcc---ceeecCCCCCChHHHHHHHHHHHHHCCCcccccc---eEeccccc
Q 039831 235 SMPLETL-------TQGKFGL-----TVERQI---FSVAEGFIPYNSEETAEHYLKQLIHRGFIQATGF---VWMHDVDE 296 (545)
Q Consensus 235 ~~~~~~l-------~~~y~~l-----~i~~~~---~wia~g~~~~~~~~~~~~~l~~L~~~sli~~~~~---~~~hdlv~ 296 (545)
... +.| ++.||++ .|+.+. +|+++| ++.+..++++|+++||++.... |+|||+++
T Consensus 361 lSY-d~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLll 433 (1221)
T 1vt4_I 361 SSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433 (1221)
T ss_dssp HHH-HHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHH
T ss_pred HHH-HhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHH
Confidence 000 111 2336776 455444 899877 2458889999999999998632 99999976
Q ss_pred C
Q 039831 297 E 297 (545)
Q Consensus 297 ~ 297 (545)
+
T Consensus 434 E 434 (1221)
T 1vt4_I 434 E 434 (1221)
T ss_dssp H
T ss_pred H
Confidence 5
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=1.3e-25 Score=264.25 Aligned_cols=233 Identities=17% Similarity=0.280 Sum_probs=177.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccc-ceeEEEEecCCCC--HHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYV-KFYF-DCLAWVRVSLLYD--FGKILEDIIK 124 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~~~~~~i~~ 124 (545)
.||||++++++|.++|...+.+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHH
Confidence 7999999999999999876667899999999999999999999996543 5556 5677999988543 4555777888
Q ss_pred HhCCCCCccccCCCCHHHHHHHHHHhcCCc--eEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHhc----
Q 039831 125 SVMPPSRVRVIIGKDYQFKKSILRDYLTNK--KYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLTS---- 198 (545)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~---- 198 (545)
.+............+.+++.+.++..+.++ |+||||||||+ ..+|..+ .+||+||||||++.++..
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTCCSC
T ss_pred HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhhcCC
Confidence 887654423334567889999999999887 99999999999 7766543 568999999999998843
Q ss_pred ---------c------------------cc-cccccc-------cchHHHhhhhhhccchHHHHHHHHHcCCCCc-----
Q 039831 199 ---------L------------------EM-ENGEKI-------RLDSVLIGGPLIRLKHEAWQFFILHYGSMPL----- 238 (545)
Q Consensus 199 ---------L------------------~l-~~~~~i-------Plal~~~g~~L~~~~~~~w~~~~~~~~~~~~----- 238 (545)
| ++ +.+++| ||||+++|++|+.++. .|...++.+.....
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~-~~~~~l~~l~~~~~~~~~~ 355 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN-RWAYYLRQLQNKQFKRIRK 355 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS-CHHHHHHHHHSCCCCCSSC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh-HHHHHHHHHhhhhhhhccc
Confidence 1 11 222222 9999999999998774 68887777643321
Q ss_pred ------hhH-----------------Hhcccce-----EEcCcc---ceeecCCCCCChHHHHHHHHHHHHHCCCccccc
Q 039831 239 ------ETL-----------------TQGKFGL-----TVERQI---FSVAEGFIPYNSEETAEHYLKQLIHRGFIQATG 287 (545)
Q Consensus 239 ------~~l-----------------~~~y~~l-----~i~~~~---~wia~g~~~~~~~~~~~~~l~~L~~~sli~~~~ 287 (545)
+.+ ++.||++ .|+++. +|.++ ++.++.++++|+++||++...
T Consensus 356 ~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 356 SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp TTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE
T ss_pred ccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec
Confidence 112 2226665 445444 77553 477899999999999998764
Q ss_pred c-----eEecccccC
Q 039831 288 F-----VWMHDVDEE 297 (545)
Q Consensus 288 ~-----~~~hdlv~~ 297 (545)
. |+||+++++
T Consensus 429 ~~~~~~~~~h~l~~~ 443 (1249)
T 3sfz_A 429 NGKSFCYYLHDLQVD 443 (1249)
T ss_dssp SSSSEEEECCHHHHH
T ss_pred CCCceEEEecHHHHH
Confidence 3 999999888
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=225.02 Aligned_cols=232 Identities=18% Similarity=0.302 Sum_probs=164.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccc-ceeEEEEecCCCCHHHH---HHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYV-KFYF-DCLAWVRVSLLYDFGKI---LEDII 123 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~---~~~i~ 123 (545)
.||||++++++|.++|...+.+.++|+|+||||+||||||+++|++.++ +.+| +.++|++++.. +...+ +..++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~ 203 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLC 203 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHH
Confidence 7999999999999999865556899999999999999999999997655 7889 57999999875 33333 33344
Q ss_pred HHhCCCCCccccCCCCHHHHHHHHHHhcCC--ceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHhc---
Q 039831 124 KSVMPPSRVRVIIGKDYQFKKSILRDYLTN--KKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLTS--- 198 (545)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~--- 198 (545)
..++...........+.+.....+++.+.+ +++||||||||+ ...++. + ..|++||||||++.++..
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~~----l---~~~~~ilvTsR~~~~~~~~~~ 275 (591)
T 1z6t_A 204 TRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLKA----F---DSQCQILLTTRDKSVTDSVMG 275 (591)
T ss_dssp HHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHHT----T---CSSCEEEEEESCGGGGTTCCS
T ss_pred HHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHHH----h---cCCCeEEEECCCcHHHHhcCC
Confidence 555532211122345677888888888876 789999999999 655542 2 458999999999987653
Q ss_pred ----------c------------------cc-cccccc-------cchHHHhhhhhhccchHHHHHHHHHcCCCCc----
Q 039831 199 ----------L------------------EM-ENGEKI-------RLDSVLIGGPLIRLKHEAWQFFILHYGSMPL---- 238 (545)
Q Consensus 199 ----------L------------------~l-~~~~~i-------Plal~~~g~~L~~~~~~~w~~~~~~~~~~~~---- 238 (545)
| .. +.+.+| |+|+..+|+.++.... .|..+++.+.....
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~-~w~~~l~~l~~~~~~~~~ 354 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIR 354 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT-CHHHHHHHHHSCCCCCSS
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch-hHHHHHHHHHHhHHHHhh
Confidence 1 11 112222 9999999999988754 68877776643221
Q ss_pred -------hhH-----------------Hhcccce-----EEcCcc---ceeecCCCCCChHHHHHHHHHHHHHCCCcccc
Q 039831 239 -------ETL-----------------TQGKFGL-----TVERQI---FSVAEGFIPYNSEETAEHYLKQLIHRGFIQAT 286 (545)
Q Consensus 239 -------~~l-----------------~~~y~~l-----~i~~~~---~wia~g~~~~~~~~~~~~~l~~L~~~sli~~~ 286 (545)
+.+ +..|+++ .|+.+. +|.++ .+.+..++++|+++|+++..
T Consensus 355 ~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 355 KSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCD 427 (591)
T ss_dssp CCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEE
T ss_pred hccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEe
Confidence 122 1124444 233322 45432 34578899999999999854
Q ss_pred cc-----eEecccccC
Q 039831 287 GF-----VWMHDVDEE 297 (545)
Q Consensus 287 ~~-----~~~hdlv~~ 297 (545)
.. |+||+++++
T Consensus 428 ~~~~~~~~~~H~lv~~ 443 (591)
T 1z6t_A 428 RNGKSFRYYLHDLQVD 443 (591)
T ss_dssp EETTEEEEECCHHHHH
T ss_pred cCCCccEEEEcHHHHH
Confidence 32 999999887
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=5.8e-22 Score=198.83 Aligned_cols=216 Identities=19% Similarity=0.151 Sum_probs=158.6
Q ss_pred CCCeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCC
Q 039831 299 PANFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLL 375 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L 375 (545)
...++.+.+.++.+..++ ..++ +|+.|.+.++. +..+ + ..+..+++|++|++++|.++.+|..++++++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~--~L~~L~L~~n~---l~~l-p-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLS--HLQHMTIDAAG---LMEL-P-DTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGT--TCSEEEEESSC---CCCC-C-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCCchhcChhhhhCC--CCCEEECCCCC---ccch-h-HHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 356788888888877665 3455 88888887776 4433 3 56777888888888888888888888888888
Q ss_pred CEEEccCCC-CCccChhhhc---------cccCcEEecCCCCCCcccHhhhcccccceeeecCc---cCCCCcccCcCCc
Q 039831 376 KYLKLNIPS-LKCLPSLLCT---------LLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI---TLPAPPKNYSSSL 442 (545)
Q Consensus 376 ~~L~l~~~~-i~~lp~~i~~---------L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~---~lp~~~~~~~~~l 442 (545)
++|++++|. ++.+|..++. +++|++|++++|.+..+|..++.+++|++|++++| .+|..+ +.+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l----~~l 228 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI----HHL 228 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG----GGC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh----ccC
Confidence 888888754 5667776654 88888888888887788877888888888888877 345555 777
Q ss_pred ccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCC--Ceeecc-CCCCCCC
Q 039831 443 KNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP--SRMVLS-EYQFPPS 517 (545)
Q Consensus 443 ~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~--~~L~lP-~l~~l~~ 517 (545)
++|+.|++..+ .+..+..++.+++|+.|++++|. ....+|..+.++++|+.|+|++ ++ ..+ | +++++++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~--~~~~~p~~~~~l~~L~~L~L~~--n~~~~~i--P~~l~~L~~ 302 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS--NLLTLPLDIHRLTQLEKLDLRG--CVNLSRL--PSLIAQLPA 302 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT--TCCBCCTTGGGCTTCCEEECTT--CTTCCCC--CGGGGGSCT
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC--chhhcchhhhcCCCCCEEeCCC--CCchhhc--cHHHhhccC
Confidence 78888777664 44556667778888888888776 5667777778888888888874 33 333 7 7778888
Q ss_pred ccEEEEeccCCchh
Q 039831 518 LIQLSLSNTELMED 531 (545)
Q Consensus 518 L~~L~L~~~~l~~~ 531 (545)
|+.+++..+.+...
T Consensus 303 L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 303 NCIILVPPHLQAQL 316 (328)
T ss_dssp TCEEECCGGGSCC-
T ss_pred ceEEeCCHHHHHHH
Confidence 88888877766543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.1e-20 Score=189.44 Aligned_cols=207 Identities=19% Similarity=0.170 Sum_probs=176.4
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
+++.|.+.++. +..++ ..+.++++|++|+|++|.++.+|..++.+++|++|++++|.++.+|..++++++|++|+
T Consensus 82 ~l~~L~L~~n~---l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 82 GRVALELRSVP---LPQFP--DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TCCEEEEESSC---CSSCC--SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ceeEEEccCCC---chhcC--hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 89999998877 45554 45677999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCCcccHhhhc---------ccccceeeecCc---cCCCCcccCcCCcccccccccccc-CCCchhhcCCCCCCC
Q 039831 403 MPSS-HIDQSPEDIWM---------MQKLMHLNFGSI---TLPAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPSVR 468 (545)
Q Consensus 403 l~~~-~l~~lp~~~~~---------L~~L~~L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~ 468 (545)
+++| .++.+|..++. +++|++|++++| .+|..+ +.+++|+.|++..+ -...+..++.+++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI----ANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGG----GGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhh----cCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 9997 67788877665 999999999987 456666 89999999988776 233556788999999
Q ss_pred EEEEecccCccccchhHhccCCCCCcEEEeecCCCC--Ceeecc-CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 469 TLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP--SRMVLS-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~--~~L~lP-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
.|++++|. ....+|..++.+++|+.|+|++ ++ ..+ | +++++++|+.|+|++|++.+..+..+..++.|++
T Consensus 233 ~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~--n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 233 ELDLRGCT--ALRNYPPIFGGRAPLKRLILKD--CSNLLTL--PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp EEECTTCT--TCCBCCCCTTCCCCCCEEECTT--CTTCCBC--CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred EEECcCCc--chhhhHHHhcCCCCCCEEECCC--CCchhhc--chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 99999987 6677888899999999999984 33 333 7 8889999999999999999988888888887765
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.2e-20 Score=187.91 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=185.1
Q ss_pred CCeeEEEEEccCCCC---CC---CcCCCCceeEEEecC-CCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCccccC
Q 039831 300 ANFKRCIILGNQFDF---FP---LEYSYMYLQSFLNHS-SKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGLEN 371 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~---~~---~~~~~~~lr~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~ 371 (545)
.+++.+.+.++.+.. .+ ..++ +|+.|.+.+ +. +....+ ..|..+++|++|++++|.++ .+|..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--~L~~L~L~~~n~---l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINN---LVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETT---EESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC--CCCeeeCCCCCc---ccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 689999999998874 33 5666 999999985 54 444455 78899999999999999998 78999999
Q ss_pred CCCCCEEEccCCCCC-ccChhhhccccCcEEecCCCCCC-cccHhhhccc-ccceeeecCc----cCCCCcccCcCCccc
Q 039831 372 LYLLKYLKLNIPSLK-CLPSLLCTLLNLETLEMPSSHID-QSPEDIWMMQ-KLMHLNFGSI----TLPAPPKNYSSSLKN 444 (545)
Q Consensus 372 L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~-~L~~L~l~~~----~lp~~~~~~~~~l~~ 444 (545)
+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.++ +|++|++++| .+|..+ +.++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~----~~l~- 198 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF----ANLN- 198 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG----GGCC-
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH----hCCc-
Confidence 999999999999987 78999999999999999999887 7899999998 9999999987 456666 7776
Q ss_pred ccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeee--cc-CCCCCCCcc
Q 039831 445 LIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMV--LS-EYQFPPSLI 519 (545)
Q Consensus 445 L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~--lP-~l~~l~~L~ 519 (545)
|+.|++..+ .+..+..++.+++|+.|++++|. . ...+..+..+++|++|+|++ +.+. +| ++..+++|+
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l-~~~~~~~~~l~~L~~L~Ls~----N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS--L-AFDLGKVGLSKNLNGLDLRN----NRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE--E-CCBGGGCCCCTTCCEEECCS----SCCEECCCGGGGGCTTCC
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc--e-eeecCcccccCCCCEEECcC----CcccCcCChHHhcCcCCC
Confidence 888887666 44566778999999999999987 3 33333488899999999997 5554 27 899999999
Q ss_pred EEEEeccCCchhhhhhhhcccccee
Q 039831 520 QLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 520 ~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
+|+|++|.+.+..+.. ..++.|++
T Consensus 272 ~L~Ls~N~l~~~ip~~-~~l~~L~~ 295 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG-GNLQRFDV 295 (313)
T ss_dssp EEECCSSEEEEECCCS-TTGGGSCG
T ss_pred EEECcCCcccccCCCC-ccccccCh
Confidence 9999999998754443 55555543
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.2e-20 Score=184.06 Aligned_cols=208 Identities=16% Similarity=0.244 Sum_probs=178.0
Q ss_pred ceeEEEecCCCCCCCCC--CcchhhhcCCCcccEEEccC-CCCC-CCCccccCCCCCCEEEccCCCCC-ccChhhhcccc
Q 039831 323 YLQSFLNHSSKSNHLNP--KDCEIFFKRFKYLRVLNMGS-AVLD-QFPPGLENLYLLKYLKLNIPSLK-CLPSLLCTLLN 397 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~ 397 (545)
+++.|.+.++. +.. ..+ ..+..+++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++
T Consensus 51 ~l~~L~L~~~~---l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLN---LPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCC---CSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred eEEEEECCCCC---ccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 89999999887 444 445 7899999999999995 8876 78999999999999999999997 78999999999
Q ss_pred CcEEecCCCCCC-cccHhhhcccccceeeecCc----cCCCCcccCcCCcc-cccccccccc--CCCchhhcCCCCCCCE
Q 039831 398 LETLEMPSSHID-QSPEDIWMMQKLMHLNFGSI----TLPAPPKNYSSSLK-NLIFTSALNP--SSCTLDILFRLPSVRT 469 (545)
Q Consensus 398 L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~----~lp~~~~~~~~~l~-~L~~L~~~~~--~~~~~~~l~~l~~L~~ 469 (545)
|++|++++|.+. .+|..++.+++|++|++++| .+|..+ +.+. +|+.|++..+ .+..+..++.++ |+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG----GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH----hhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 999999999777 78999999999999999988 456677 8887 8999987766 445667788887 999
Q ss_pred EEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--cCCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 470 LRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--SEYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 470 L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
|++++|. .....+..+..+++|+.|+|++ +.+.. |.+..+++|++|+|++|.+.+..+..+..++.|++|
T Consensus 202 L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 202 VDLSRNM--LEGDASVLFGSDKNTQKIHLAK----NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp EECCSSE--EEECCGGGCCTTSCCSEEECCS----SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred EECcCCc--ccCcCCHHHhcCCCCCEEECCC----CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 9999987 5556788899999999999997 56653 367789999999999999998777778888877754
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.9e-19 Score=188.73 Aligned_cols=206 Identities=21% Similarity=0.213 Sum_probs=96.0
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCccChh-hhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNIPSLKCLPSL-LCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~ 400 (545)
+++.|.+.++. +..+.+ ..|..+++|++|+|++|.++.+ |..+.++.+|++|+|++|.++.+|+. +..+++|++
T Consensus 76 ~l~~L~L~~n~---i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 76 NTRYLNLMENN---IQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TCSEEECCSSC---CCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CccEEECcCCc---CceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 45555554444 333333 4455555555555555555533 24455555555555555555555443 444555555
Q ss_pred EecCCCCCCccc-HhhhcccccceeeecCc----cCCC-CcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEec
Q 039831 401 LEMPSSHIDQSP-EDIWMMQKLMHLNFGSI----TLPA-PPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISG 474 (545)
Q Consensus 401 L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~----~lp~-~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (545)
|++++|.+..+| ..+..+++|++|+++++ .++. .+ ..+++|+.|++..+.-..++.+..+++|+.|++++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF----EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT----TTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc----cCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 555555555554 24455555555555442 1222 12 44455555544444222233344455555555555
Q ss_pred ccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEeccCCchhhhhhhhccccc
Q 039831 475 DLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLSNTELMEDLINSELETQVL 542 (545)
Q Consensus 475 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l 542 (545)
|. .....+..|.++++|+.|+|++ +.+.- | .+..+++|+.|+|++|.+...+...+..++.|
T Consensus 228 N~--l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 228 NH--FPEIRPGSFHGLSSLKKLWVMN----SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp SC--CSEECGGGGTTCTTCCEEECTT----SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred Cc--CcccCcccccCccCCCEEEeCC----CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 44 2223344455555555555543 22211 2 44444555555555555544444444444433
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=187.52 Aligned_cols=215 Identities=16% Similarity=0.125 Sum_probs=94.5
Q ss_pred CCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCc-cccCCCC
Q 039831 300 ANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPP-GLENLYL 374 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~ 374 (545)
..++.+.+..+.+.... ..++ +|+.|.+.++. +..+.+ ..|..+++|++|+|++|.++.+|. .+..+++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~---i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNH---IRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSC---CCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCc---CCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 34444444444444332 2333 44444444443 333333 444445555555555555444433 3444555
Q ss_pred CCEEEccCCCCCccCh-hhhccccCcEEecCCC-CCCccc-HhhhcccccceeeecCccCC--CCcccCcCCcccccccc
Q 039831 375 LKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSS-HIDQSP-EDIWMMQKLMHLNFGSITLP--APPKNYSSSLKNLIFTS 449 (545)
Q Consensus 375 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~l~~~~lp--~~~~~~~~~l~~L~~L~ 449 (545)
|++|++++|.++.+|. .+.++++|++|++++| .+..+| ..|..+++|++|++++|.+. +.+ ..+++|+.|+
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~ 213 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL----TPLIKLDELD 213 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC----TTCSSCCEEE
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc----CCCcccCEEE
Confidence 5555555555444443 3444455555555543 444444 23444555555555444221 122 4444444444
Q ss_pred cccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec-c--CCCCCCCccEEEEe
Q 039831 450 ALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-S--EYQFPPSLIQLSLS 524 (545)
Q Consensus 450 ~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P--~l~~l~~L~~L~L~ 524 (545)
+..+ ....+..+..+++|+.|++.+|. .....+..|.++++|+.|+|++ +.+.- | .+..+++|+.|+|+
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQ--IQVIERNAFDNLQSLVEINLAH----NNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTSSTTCTTCCEEECTT----SCCCCCCTTTTSSCTTCCEEECC
T ss_pred CCCCccCccChhhhccCccCCEEECCCCc--eeEEChhhhcCCCCCCEEECCC----CCCCccChhHhccccCCCEEEcC
Confidence 4333 12223334444555555555444 2222233444455555555543 22211 2 34445555555555
Q ss_pred ccCCch
Q 039831 525 NTELME 530 (545)
Q Consensus 525 ~~~l~~ 530 (545)
+|++..
T Consensus 288 ~Np~~C 293 (440)
T 3zyj_A 288 HNPWNC 293 (440)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 555544
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.2e-19 Score=180.10 Aligned_cols=218 Identities=19% Similarity=0.172 Sum_probs=136.4
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCC--cchhhhcCCCcccEEEccCCCCCCCCccccC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPK--DCEIFFKRFKYLRVLNMGSAVLDQFPPGLEN 371 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~ 371 (545)
.+..++++.+..+.+..++ ..++ +|+.|.+.++.. ... .+ ..+..+++|++|++++|.++.+|..+..
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~--~L~~L~L~~n~l---~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSSNGL---SFKGCCS-QSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCC---CEEEEEE-HHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCCCEEECCCCccCccCHhHhhccc--cCCEEECCCCcc---CcccCcc-cccccccccCEEECCCCccccChhhcCC
Confidence 3456677777776665544 2344 677777666552 211 12 4455667777777777777666666777
Q ss_pred CCCCCEEEccCCCCCccCh--hhhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCcc-----CCCCcccCcCCcc
Q 039831 372 LYLLKYLKLNIPSLKCLPS--LLCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSIT-----LPAPPKNYSSSLK 443 (545)
Q Consensus 372 L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~-----lp~~~~~~~~~l~ 443 (545)
+++|++|++++|.++.+|. .+.++++|++|++++|.+... |..+..+++|++|++++|. +|..+ ..++
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~ 175 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF----TELR 175 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC----TTCT
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH----hhCc
Confidence 7777777777777666653 566777777777777766544 3556677777777777652 34445 6677
Q ss_pred cccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCC-C
Q 039831 444 NLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPP-S 517 (545)
Q Consensus 444 ~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~-~ 517 (545)
+|+.|++..+ ....+..+..+++|+.|++++|. .....+..+..+++|+.|+|++ +.+.- | .+..++ +
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQVLDYSL----NHIMTSKKQELQHFPSS 249 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CSBCCSGGGTTCTTCCEEECTT----SCCCBCSSSSCCCCCTT
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc--cCccChhhccCcccCCEeECCC----CCCcccCHHHHHhhhcc
Confidence 7777766554 22334556667777777777765 2222233566677777777775 33322 4 566664 7
Q ss_pred ccEEEEeccCCchh
Q 039831 518 LIQLSLSNTELMED 531 (545)
Q Consensus 518 L~~L~L~~~~l~~~ 531 (545)
|++|+|++|++.++
T Consensus 250 L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 250 LAFLNLTQNDFACT 263 (306)
T ss_dssp CCEEECTTCCEECS
T ss_pred CCEEEccCCCeecc
Confidence 88888888888765
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=3.3e-19 Score=199.24 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=52.6
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCccccCCCCCCEEEccCCCCC-ccChhhhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGLENLYLLKYLKLNIPSLK-CLPSLLCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~ 400 (545)
+|+.|.+.++. +....+ ..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..++++++|++
T Consensus 443 ~L~~L~L~~n~---l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 443 KLRDLKLWLNM---LEGEIP-QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp TCCEEECCSSC---CCSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCEEECCCCc---ccCcCC-HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 44444444443 232333 44555555555555555554 34555555555555555555544 44555555555555
Q ss_pred EecCCCCCC-cccHhhhcccccceeeecCc
Q 039831 401 LEMPSSHID-QSPEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 401 L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~ 429 (545)
|++++|.+. .+|..++.+++|+.|++++|
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 555555443 44555555555555555544
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=8e-19 Score=184.01 Aligned_cols=128 Identities=18% Similarity=0.127 Sum_probs=98.8
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L 372 (545)
.+..++++.+..+.+.... ..++ +|+.|.+.++.. ...+.+ ..|..+++|++|++++|.++.+ |..++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~~--~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQ--DLQFLKVEQQTP--GLVIRN-NTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCT--TCCEEECCCCST--TCEECT-TTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CCCccCEEEecCCccCcCChhHhccCc--cccEEECcCCcc--cceECc-ccccccccCCEEeCCCCccCccChhhccCc
Confidence 4567889999988877653 5566 888998887763 123444 6788899999999999988855 7788889
Q ss_pred CCCCEEEccCCCCCc-cChh--hhccccCcEEecCCCCCCcc-cHh-hhcccccceeeecCcc
Q 039831 373 YLLKYLKLNIPSLKC-LPSL--LCTLLNLETLEMPSSHIDQS-PED-IWMMQKLMHLNFGSIT 430 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~l~~l-p~~-~~~L~~L~~L~l~~~~ 430 (545)
++|++|++++|.++. .|.. ++++++|++|++++|.+..+ |.. ++.+++|++|++++|.
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 999999999988875 3444 78888899999988887776 544 7888888888888763
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1.3e-18 Score=178.76 Aligned_cols=218 Identities=19% Similarity=0.218 Sum_probs=148.8
Q ss_pred CCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCCC
Q 039831 299 PANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENLY 373 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~ 373 (545)
..+++.+.+..+.+..++ ..++ +|+.|.+.++. +..+++ ..|..+++|++|++++|.++.+| ..+++++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~--~L~~L~L~~n~---i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQ---IEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCC--CCSEEECTTSC---CCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhcccc--cCcEEECCCCc---ccccCh-hhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 367788888888877666 4456 88888888776 555555 67888888999999988888664 5578888
Q ss_pred CCCEEEccCCCCCccChhh-hccccCcEEecCCCCCCccc-HhhhcccccceeeecCccCCC-CcccCcCCccccc----
Q 039831 374 LLKYLKLNIPSLKCLPSLL-CTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLPA-PPKNYSSSLKNLI---- 446 (545)
Q Consensus 374 ~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp~-~~~~~~~~l~~L~---- 446 (545)
+|++|++++|.++.+|..+ +++++|++|++++|.+..++ ..++.+++|++|++++|.+.. .+ +.+++|+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL----SLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG----GGCTTCSEEEC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc----ccccccceeec
Confidence 8999999888888888764 78888999999888887775 568888888888888774321 12 2233332
Q ss_pred ------------------------------------cccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCC
Q 039831 447 ------------------------------------FTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCEL 490 (545)
Q Consensus 447 ------------------------------------~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 490 (545)
.|.+..+.-..+..++.+++|+.|++++|. .....+..+..+
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l 271 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKM 271 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTC
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc--CCCcChhHcccc
Confidence 232222211223445667777777777776 344446677777
Q ss_pred CCCcEEEeecCCCC-Ceeecc-CCCCCCCccEEEEeccCCchhh
Q 039831 491 HKLECLKLVNESKP-SRMVLS-EYQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 491 ~~L~~L~L~~~~~~-~~L~lP-~l~~l~~L~~L~L~~~~l~~~~ 532 (545)
++|+.|+|+++ . ..+ | .+..+++|+.|+|++|.+...|
T Consensus 272 ~~L~~L~L~~n--~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~ 311 (390)
T 3o6n_A 272 QRLERLYISNN--RLVAL--NLYGQPIPTLKVLDLSHNHLLHVE 311 (390)
T ss_dssp SSCCEEECCSS--CCCEE--ECSSSCCTTCCEEECCSSCCCCCG
T ss_pred ccCCEEECCCC--cCccc--CcccCCCCCCCEEECCCCcceecC
Confidence 88888888751 1 121 4 4455666666666666666543
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=183.07 Aligned_cols=238 Identities=18% Similarity=0.154 Sum_probs=139.6
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L 372 (545)
.+..++.+.+..+.+.... ..++ +|+.|.+.++. +..+.+ ..|..+++|++|+|++|.++.+|.. ++++
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~---i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFP--HLEELELNENI---VSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECTTSC---CCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCcEEECCCCccceECHhHccCCC--CCCEEECCCCc---cCEeCh-hhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 3456677777777665543 4445 67777776665 444444 5666777777777777777666543 5667
Q ss_pred CCCCEEEccCCCCCcc-ChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccCCCCcccCcCCccccccccc
Q 039831 373 YLLKYLKLNIPSLKCL-PSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSA 450 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~ 450 (545)
++|++|++++|.+..+ |..+.++++|++|++++|.+..++ ..|..+++|++|++++|.+..-....+..+++|+.|.+
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 7777777777766655 334566666666666666655553 45666666666666655322110000144555555544
Q ss_pred ccc--CCCchhhcCCCC------------------------CCCEEEEecccCccccchh-HhccCCCCCcEEEeecC--
Q 039831 451 LNP--SSCTLDILFRLP------------------------SVRTLRISGDLSYYQSGVS-KSLCELHKLECLKLVNE-- 501 (545)
Q Consensus 451 ~~~--~~~~~~~l~~l~------------------------~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~-- 501 (545)
..+ .......+..++ +|+.|++++|. ...++ ..+..+++|+.|+|+++
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN---LTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC---CCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc---ccccCHHHhcCccccCeeECCCCcC
Confidence 333 111122233344 45555555544 33344 56788888888888863
Q ss_pred ---------CCC--Ceeec---------c-CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 502 ---------SKP--SRMVL---------S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 502 ---------~~~--~~L~l---------P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
.++ +.|.+ | .+..+++|+.|+|++|.+...+...+..++.|+.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 111 44443 4 6777888888888888888777766666666654
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=3.4e-18 Score=171.51 Aligned_cols=219 Identities=15% Similarity=0.107 Sum_probs=143.0
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLY 373 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~ 373 (545)
.+..++.+.+..+.+...+ ..++ +|+.|.+.++. +..+.+ ..|..+++|++|++++|.++.+|..+. +
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~ 121 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLK--NLHTLILINNK---ISKISP-GAFAPLVKLERLYLSKNQLKELPEKMP--K 121 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSC---CCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSCC--T
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCC--CCCEEECCCCc---CCeeCH-HHhcCCCCCCEEECCCCcCCccChhhc--c
Confidence 3456677777777666544 3445 77777776665 444544 667777777777777777777766654 5
Q ss_pred CCCEEEccCCCCCccChh-hhccccCcEEecCCCCCC---cccHhhhcccccceeeecCc---cCCCCcccCcCCccccc
Q 039831 374 LLKYLKLNIPSLKCLPSL-LCTLLNLETLEMPSSHID---QSPEDIWMMQKLMHLNFGSI---TLPAPPKNYSSSLKNLI 446 (545)
Q Consensus 374 ~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~---~lp~~~~~L~~L~~L~l~~~---~lp~~~~~~~~~l~~L~ 446 (545)
+|++|++++|.++.+|.. +.++++|++|++++|.+. ..|..+..+++|++|++++| .+|..+ . ++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~--~~L~ 195 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL----P--PSLT 195 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC----C--TTCS
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc----c--ccCC
Confidence 777777777777766553 567777777777777654 33466777777777777766 344433 2 5666
Q ss_pred ccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCee-ecc-CCCCCCCccEEE
Q 039831 447 FTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRM-VLS-EYQFPPSLIQLS 522 (545)
Q Consensus 447 ~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L-~lP-~l~~l~~L~~L~ 522 (545)
.|++..+ ....+..+..+++|+.|++++|. .....+..+..+++|+.|+|++ +.+ .+| ++..+++|++|+
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~----N~l~~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNN----NKLVKVPGGLADHKYIQVVY 269 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSC--CCEECTTTGGGSTTCCEEECCS----SCCSSCCTTTTTCSSCCEEE
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCc--CceeChhhccCCCCCCEEECCC----CcCccCChhhccCCCcCEEE
Confidence 6665544 23344567778888888888776 3333334677778888888875 222 226 777778888888
Q ss_pred EeccCCchhhhhhh
Q 039831 523 LSNTELMEDLINSE 536 (545)
Q Consensus 523 L~~~~l~~~~~~~l 536 (545)
|++|.+++.+...+
T Consensus 270 l~~N~i~~~~~~~f 283 (330)
T 1xku_A 270 LHNNNISAIGSNDF 283 (330)
T ss_dssp CCSSCCCCCCTTSS
T ss_pred CCCCcCCccChhhc
Confidence 88888877665554
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=179.93 Aligned_cols=220 Identities=18% Similarity=0.171 Sum_probs=134.8
Q ss_pred CCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCC
Q 039831 299 PANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLY 373 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~ 373 (545)
...++.+.+.++.+...+ ..++ +|+.|.+.++. +..+.+ ..|..+++|++|++++|.++.+|.. +++++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCV--NLQALVLTSNG---INTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTSC---CCEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred cccCcEEECCCCcCcccCHHHhccCC--CCCEEECCCCc---cCccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 346667777766665443 3444 67777766655 444444 5566777777777777777766654 66677
Q ss_pred CCCEEEccCCCCCccCh--hhhccccCcEEecCCC-CCCccc-HhhhcccccceeeecCccC----CCCcccCcCCcccc
Q 039831 374 LLKYLKLNIPSLKCLPS--LLCTLLNLETLEMPSS-HIDQSP-EDIWMMQKLMHLNFGSITL----PAPPKNYSSSLKNL 445 (545)
Q Consensus 374 ~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~l~~~~l----p~~~~~~~~~l~~L 445 (545)
+|++|++++|.++.+|. .+.++++|++|++++| .+..+| ..++.+++|++|++++|.+ |..+ +.+++|
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L 200 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL----KSIQNV 200 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----TTCSEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH----hccccC
Confidence 77777777777776665 4666777777777776 466654 5566777777777766532 4445 666666
Q ss_pred ccccccccCCC-chhh-cCCCCCCCEEEEecccCcc-----------------------------ccchhHhccCCCCCc
Q 039831 446 IFTSALNPSSC-TLDI-LFRLPSVRTLRISGDLSYY-----------------------------QSGVSKSLCELHKLE 494 (545)
Q Consensus 446 ~~L~~~~~~~~-~~~~-l~~l~~L~~L~l~~~~~~~-----------------------------~~~~~~~l~~l~~L~ 494 (545)
++|.+..+.-. .+.. +..+++|+.|++++|.-.. ...+|..+..+++|+
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 66665544222 1221 2346677777777665110 012455666777777
Q ss_pred EEEeecCCCCCeee-cc-C-CCCCCCccEEEEeccCCchhh
Q 039831 495 CLKLVNESKPSRMV-LS-E-YQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 495 ~L~L~~~~~~~~L~-lP-~-l~~l~~L~~L~L~~~~l~~~~ 532 (545)
.|+|++ +.+. +| + +..+++|++|+|++|++.+++
T Consensus 281 ~L~Ls~----N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 281 ELEFSR----NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEECCS----SCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCC----CCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 777764 2222 25 3 467777777777777777754
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.7e-18 Score=169.86 Aligned_cols=213 Identities=19% Similarity=0.180 Sum_probs=168.2
Q ss_pred EEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEcc
Q 039831 304 RCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLN 381 (545)
Q Consensus 304 ~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~ 381 (545)
.+.........++ ...+ +++.|.+.++. +..+++ ..|..+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 15 ~~~c~~~~l~~ip~~~~~--~l~~L~l~~n~---i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPA--ASQRIFLHGNR---ISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp EEECCSSCCSSCCTTCCT--TCSEEECTTSC---CCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEcCcCCcccCCcCCCC--CceEEEeeCCc---CCccCH-HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 4444444455555 4455 89999998877 555665 7789999999999999999866 7789999999999999
Q ss_pred CCC-CCcc-ChhhhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCccC---CCC-cccCcCCccccccccccccC
Q 039831 382 IPS-LKCL-PSLLCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSITL---PAP-PKNYSSSLKNLIFTSALNPS 454 (545)
Q Consensus 382 ~~~-i~~l-p~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~l---p~~-~~~~~~~l~~L~~L~~~~~~ 454 (545)
+|. ++.+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+ |.. + +.+++|+.|++..+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF----RDLGNLTHLFLHGNR 164 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh----ccCCCccEEECCCCc
Confidence 997 8888 56789999999999999988887 47789999999999998743 332 4 788899998877662
Q ss_pred --CCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec-c--CCCCCCCccEEEEeccCCc
Q 039831 455 --SCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-S--EYQFPPSLIQLSLSNTELM 529 (545)
Q Consensus 455 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P--~l~~l~~L~~L~L~~~~l~ 529 (545)
......+..+++|+.|++++|. .....+..+..+++|+.|+|++ +.+.- | .+..+++|+.|+|++|++.
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNR--VAHVHPHAFRDLGRLMTLYLFA----NNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS----SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCHHHhcCccccCEEECCCCc--ccccCHhHccCcccccEeeCCC----CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 2233347889999999999987 4455578889999999999986 33322 3 6788999999999999998
Q ss_pred hhh
Q 039831 530 EDL 532 (545)
Q Consensus 530 ~~~ 532 (545)
.+.
T Consensus 239 c~~ 241 (285)
T 1ozn_A 239 CDC 241 (285)
T ss_dssp CSG
T ss_pred CCC
Confidence 753
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=2.2e-18 Score=180.60 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=183.8
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L 372 (545)
.+..++.|.+..+.+.... ..++ +|+.|.+.++. +..+.+ ..|..+++|++|+|++|.++.+|.. ++.+
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~---i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNS---IRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSC---CCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCc---cCCcCh-hhccCcccCCEEECCCCcCCccChhhhccc
Confidence 4568999999999987664 5566 99999998887 566666 7899999999999999999988654 8899
Q ss_pred CCCCEEEccCCCCCccCh-hhhccccCcEEecCCC-CCCccc-HhhhcccccceeeecCccCC--CCcccCcCCcccccc
Q 039831 373 YLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSS-HIDQSP-EDIWMMQKLMHLNFGSITLP--APPKNYSSSLKNLIF 447 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~l~~~~lp--~~~~~~~~~l~~L~~ 447 (545)
++|++|++++|.++.+|. .+.++++|++|++++| .+..+| ..+..+++|++|++++|.+. +.+ ..+++|+.
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~ 222 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL----TPLVGLEE 222 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC----TTCTTCCE
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccc----cccccccE
Confidence 999999999999999976 5789999999999996 888888 56999999999999988442 245 88889999
Q ss_pred cccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec-c--CCCCCCCccEEE
Q 039831 448 TSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-S--EYQFPPSLIQLS 522 (545)
Q Consensus 448 L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P--~l~~l~~L~~L~ 522 (545)
|++.++ .+..+..+..+++|+.|++++|. .....+..|.++++|+.|+|++ +.+.- | .+..+++|+.|+
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ--VSLIERNAFDGLASLVELNLAH----NNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS----SCCSCCCTTSSTTCTTCCEEE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCc--CceECHHHhcCCCCCCEEECCC----CcCCccChHHhccccCCCEEE
Confidence 987766 44456778999999999999987 4455567899999999999996 44432 4 678899999999
Q ss_pred EeccCCchhh
Q 039831 523 LSNTELMEDL 532 (545)
Q Consensus 523 L~~~~l~~~~ 532 (545)
|++|++..+.
T Consensus 297 L~~Np~~CdC 306 (452)
T 3zyi_A 297 LHHNPWNCDC 306 (452)
T ss_dssp CCSSCEECST
T ss_pred ccCCCcCCCC
Confidence 9999987753
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=1.6e-18 Score=193.64 Aligned_cols=230 Identities=19% Similarity=0.179 Sum_probs=181.5
Q ss_pred CCCeeEEEEEccCCCC-CC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCccccCCC
Q 039831 299 PANFKRCIILGNQFDF-FP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGLENLY 373 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~-~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~ 373 (545)
...++.+.+..+.... .+ ..++ +|+.|.+.++. +....+ ..+..+++|+.|++++|.++ .+|..++.++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~---l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHLSFNY---LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCT--TCCEEECCSSE---EESCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cCCccEEECCCCccccccCHHHhcCC--CCCEEECcCCc---ccCccc-HHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 4578999998888763 33 5667 89999998876 455556 78899999999999999988 7799999999
Q ss_pred CCCEEEccCCCCC-ccChhhhccccCcEEecCCCCCC-cccHhhhcccccceeeecCc----cCCCCcccCcCCcccccc
Q 039831 374 LLKYLKLNIPSLK-CLPSLLCTLLNLETLEMPSSHID-QSPEDIWMMQKLMHLNFGSI----TLPAPPKNYSSSLKNLIF 447 (545)
Q Consensus 374 ~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~----~lp~~~~~~~~~l~~L~~ 447 (545)
+|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++| .+|..+ +.+++|+.
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~ 542 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL----GDCRSLIW 542 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG----GGCTTCCE
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH----cCCCCCCE
Confidence 9999999999987 67889999999999999999776 78999999999999999988 456677 88888888
Q ss_pred cccccc--CCCc--------------------------------------------------------------------
Q 039831 448 TSALNP--SSCT-------------------------------------------------------------------- 457 (545)
Q Consensus 448 L~~~~~--~~~~-------------------------------------------------------------------- 457 (545)
|++..+ .+..
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 876544 2111
Q ss_pred --hhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeee--cc-CCCCCCCccEEEEeccCCchhh
Q 039831 458 --LDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMV--LS-EYQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 458 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~--lP-~l~~l~~L~~L~L~~~~l~~~~ 532 (545)
+..++.+++|+.|++++|. ..+.+|..+++++.|+.|+|++ +.+. +| .++++++|+.|+|++|++++..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~--l~g~ip~~l~~l~~L~~L~Ls~----N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNM--LSGYIPKEIGSMPYLFILNLGH----NDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSC--CBSCCCGGGGGCTTCCEEECCS----SCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred cCchhhhccccccEEECcCCc--ccccCCHHHhccccCCEEeCcC----CccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 1224456778888888887 6667888888888888888887 4443 26 7777777888888888777777
Q ss_pred hhhhhcccccee
Q 039831 533 INSELETQVLQV 544 (545)
Q Consensus 533 ~~~l~~~~~l~~ 544 (545)
+..+..++.|++
T Consensus 697 p~~l~~l~~L~~ 708 (768)
T 3rgz_A 697 PQAMSALTMLTE 708 (768)
T ss_dssp CGGGGGCCCCSE
T ss_pred ChHHhCCCCCCE
Confidence 677776666654
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.7e-18 Score=173.85 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=69.5
Q ss_pred CCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCC
Q 039831 299 PANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYL 374 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~ 374 (545)
...++.+.+..+.+.... ..++ +|+.|.+.++. +..+.+ ..|..+++|++|++++|.++.+|..+. .+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQ--HLYALVLVNNK---ISKIHE-KAFSPLRKLQKLYISKNHLVEIPPNLP--SS 124 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSC---CCEECG-GGSTTCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCC--CCcEEECCCCc---cCccCH-hHhhCcCCCCEEECCCCcCCccCcccc--cc
Confidence 345666666666555432 3344 66666665554 344444 556666666666666666666665554 56
Q ss_pred CCEEEccCCCCCccChh-hhccccCcEEecCCCCCCc---ccHhhhcccccceeeecCc
Q 039831 375 LKYLKLNIPSLKCLPSL-LCTLLNLETLEMPSSHIDQ---SPEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 375 L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~---lp~~~~~L~~L~~L~l~~~ 429 (545)
|++|++++|.++.+|.. +.++++|++|++++|.+.. .|..+..+ +|++|++++|
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 66666666666666543 5666666666666665542 23444444 4444444433
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=3.3e-18 Score=171.62 Aligned_cols=223 Identities=19% Similarity=0.187 Sum_probs=176.5
Q ss_pred CeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEE
Q 039831 301 NFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYL 378 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L 378 (545)
.++.+.+..+....++ ...+ .++.|.+.++. +..+++ ..|..+++|++|++++|.++.+ |..++.+++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~--~l~~L~L~~n~---i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNK---ITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCT--TCCEEECCSSC---CCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccccCccCCC--CCeEEECCCCc---CCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 3466666666666665 3445 89999998887 666766 7899999999999999999976 8889999999999
Q ss_pred EccCCCCCccChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccC------CCCcccCcCCcccccccccc
Q 039831 379 KLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITL------PAPPKNYSSSLKNLIFTSAL 451 (545)
Q Consensus 379 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~l------p~~~~~~~~~l~~L~~L~~~ 451 (545)
++++|.++.+|..+. ++|++|++++|.+..+| ..+..+++|++|++++|.+ +..+ ..+++|+.|.+.
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~~l~~L~~L~l~ 179 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF----QGMKKLSYIRIA 179 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG----GGCTTCCEEECC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc----cCCCCcCEEECC
Confidence 999999999998765 79999999999999887 5689999999999998854 3445 788888888766
Q ss_pred ccCC-CchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEeccC
Q 039831 452 NPSS-CTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLSNTE 527 (545)
Q Consensus 452 ~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~ 527 (545)
.+.- ..+..+ .++|+.|++++|. .....+..+..+++|+.|+|++ +.+.- | ++..+++|+.|+|++|.
T Consensus 180 ~n~l~~l~~~~--~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 180 DTNITTIPQGL--PPSLTELHLDGNK--ITKVDAASLKGLNNLAKLGLSF----NSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SSCCCSCCSSC--CTTCSEEECTTSC--CCEECTGGGTTCTTCCEEECCS----SCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred CCccccCCccc--cccCCEEECCCCc--CCccCHHHhcCCCCCCEEECCC----CcCceeChhhccCCCCCCEEECCCCc
Confidence 5522 222222 3789999999987 4444567899999999999996 33332 4 78889999999999999
Q ss_pred Cchhhhhhhhcccccee
Q 039831 528 LMEDLINSELETQVLQV 544 (545)
Q Consensus 528 l~~~~~~~l~~~~~l~~ 544 (545)
+...|. .+..++.|++
T Consensus 252 l~~lp~-~l~~l~~L~~ 267 (330)
T 1xku_A 252 LVKVPG-GLADHKYIQV 267 (330)
T ss_dssp CSSCCT-TTTTCSSCCE
T ss_pred CccCCh-hhccCCCcCE
Confidence 996553 3566666665
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=179.18 Aligned_cols=227 Identities=17% Similarity=0.202 Sum_probs=187.3
Q ss_pred eEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCCCCCCEEEc
Q 039831 303 KRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKL 380 (545)
Q Consensus 303 r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l 380 (545)
+.+.........++ .-.+ +++.|.+.++. +..+.+ ..|..+++|++|+|++|.++.++ ..+.++++|++|+|
T Consensus 46 ~~v~c~~~~l~~iP~~~~~--~l~~L~L~~n~---i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIST--NTRLLNLHENQ---IQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp CEEECCSCCCSSCCSCCCT--TCSEEECCSCC---CCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CEEEeCCCCcCcCCCCCCC--CCcEEEccCCc---CCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 34554555555555 4445 89999998887 566666 78999999999999999999764 67899999999999
Q ss_pred cCCCCCccCh-hhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCc----cCCC-CcccCcCCcccccccccccc
Q 039831 381 NIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI----TLPA-PPKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 381 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~----~lp~-~~~~~~~~l~~L~~L~~~~~ 453 (545)
++|.++.+|. .+..+++|++|++++|.+..+| ..+..+++|++|+++++ .++. .+ ..+++|+.|++..+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~----~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF----EGLSNLRYLNLAMC 195 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT----TTCSSCCEEECTTS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh----hcccccCeecCCCC
Confidence 9999999987 5899999999999999999998 57999999999999875 2343 45 88999999988777
Q ss_pred CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEeccCCch
Q 039831 454 SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLSNTELME 530 (545)
Q Consensus 454 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~ 530 (545)
.-..++.+..+++|+.|++++|. .....+..|.++++|+.|+|++ +.+.- | .|.++++|+.|+|++|.+..
T Consensus 196 ~l~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 196 NLREIPNLTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQ----SQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CCSSCCCCTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCEEECTT----CCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred cCccccccCCCcccCEEECCCCc--cCccChhhhccCccCCEEECCC----CceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 54555678899999999999997 4455578899999999999986 33332 5 88999999999999999999
Q ss_pred hhhhhhhccccceeC
Q 039831 531 DLINSELETQVLQVV 545 (545)
Q Consensus 531 ~~~~~l~~~~~l~~l 545 (545)
.+...+..++.|+.|
T Consensus 270 ~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 270 LPHDLFTPLHHLERI 284 (440)
T ss_dssp CCTTTTSSCTTCCEE
T ss_pred cChhHhccccCCCEE
Confidence 988888877777653
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.2e-18 Score=187.04 Aligned_cols=217 Identities=20% Similarity=0.248 Sum_probs=136.5
Q ss_pred CCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCc-cccCCCC
Q 039831 300 ANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPP-GLENLYL 374 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~ 374 (545)
..++.+.+.++.+..++ ..++ +|+.|.+.++. +..+++ ..|..+++|++|+|++|.++.+|+ .++++++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~--~L~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLNDLQ---IEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCC--CCSEEECTTSC---CCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCC--CCcEEECCCCC---CCCCCh-HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 45667777776665555 3455 77777777665 445554 567777777777777777776643 4577777
Q ss_pred CCEEEccCCCCCccChhh-hccccCcEEecCCCCCCccc-HhhhcccccceeeecCccCCC-CcccCcCCccc-------
Q 039831 375 LKYLKLNIPSLKCLPSLL-CTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLPA-PPKNYSSSLKN------- 444 (545)
Q Consensus 375 L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp~-~~~~~~~~l~~------- 444 (545)
|++|++++|.++.+|+.+ +++++|++|++++|.+..+| ..++.+++|++|++++|.+.. .+ +.+++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~l~~L~~L~l~ 200 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVS 200 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG----GGCTTCSEEECC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh----hhhhhhhhhhcc
Confidence 777777777777777653 77777777777777776665 457777777777777663321 11 22222
Q ss_pred ---------------------------------cccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCC
Q 039831 445 ---------------------------------LIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELH 491 (545)
Q Consensus 445 ---------------------------------L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 491 (545)
|+.|.+..+.-..+..++.+++|+.|++++|. .....|..++.++
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~ 278 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQ 278 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTCS
T ss_pred cCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc--cCCCCHHHhcCcc
Confidence 23333222222233456677778888887776 4445566777788
Q ss_pred CCcEEEeecCCCCCeeec-c-CCCCCCCccEEEEeccCCchhh
Q 039831 492 KLECLKLVNESKPSRMVL-S-EYQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 492 ~L~~L~L~~~~~~~~L~l-P-~l~~l~~L~~L~L~~~~l~~~~ 532 (545)
+|+.|+|++ +.+.- | ++..+++|+.|+|++|.+...|
T Consensus 279 ~L~~L~Ls~----N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~ 317 (597)
T 3oja_B 279 RLERLYISN----NRLVALNLYGQPIPTLKVLDLSHNHLLHVE 317 (597)
T ss_dssp SCCEEECTT----SCCCEEECSSSCCTTCCEEECCSSCCCCCG
T ss_pred CCCEEECCC----CCCCCCCcccccCCCCcEEECCCCCCCccC
Confidence 888888875 22211 4 4455666666666666665443
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=1e-17 Score=169.10 Aligned_cols=226 Identities=19% Similarity=0.180 Sum_probs=100.0
Q ss_pred CCeeEEEEEccCCCCCC--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 300 ANFKRCIILGNQFDFFP--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
.+++.+.+.++.+...+ ..++ +|+.|.+.++. +..+ +.+..+++|++|++++|.++.+|. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~--~L~~L~L~~n~---i~~~---~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNK---ITDI---SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT--TCCEEECCSSC---CCCC---GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCccccchhhhcCC--cCCEEEccCCc---ccCc---hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 34555555555444433 3334 55555555443 2222 234555555555555555554433 444555555
Q ss_pred EEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCC--Ccc------------------c
Q 039831 378 LKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPA--PPK------------------N 437 (545)
Q Consensus 378 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~--~~~------------------~ 437 (545)
|++++|.....++.+..+++|++|++++|.+..++. +..+++|++|++++|.+.. .+. .
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence 555544322222234444444444444444444443 4444445555444442211 010 0
Q ss_pred CcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCC-CeeeccCCCCCC
Q 039831 438 YSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP-SRMVLSEYQFPP 516 (545)
Q Consensus 438 ~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~L~lP~l~~l~ 516 (545)
.+..+++|++|.+.++.-.....+..+++|+.|++++|. ...+ ..+..+++|+.|+++++ . ..+ |++..++
T Consensus 216 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~---l~~~-~~~~~l~~L~~L~l~~n--~l~~~--~~~~~l~ 287 (347)
T 4fmz_A 216 PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ---ISDI-NAVKDLTKLKMLNVGSN--QISDI--SVLNNLS 287 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCC-GGGTTCTTCCEEECCSS--CCCCC--GGGGGCT
T ss_pred hhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc---cCCC-hhHhcCCCcCEEEccCC--ccCCC--hhhcCCC
Confidence 013444444444433322222225555556666665554 1222 23555566666666541 0 000 2333445
Q ss_pred CccEEEEeccCCchhhhhhhhccccce
Q 039831 517 SLIQLSLSNTELMEDLINSELETQVLQ 543 (545)
Q Consensus 517 ~L~~L~L~~~~l~~~~~~~l~~~~~l~ 543 (545)
+|+.|++++|.+.+.++..+..++.|+
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCCEEECcCCcCCCcChhHhhccccCC
Confidence 555555555555554444444444443
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=7.1e-18 Score=178.02 Aligned_cols=229 Identities=19% Similarity=0.130 Sum_probs=177.5
Q ss_pred EEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEcc
Q 039831 304 RCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLN 381 (545)
Q Consensus 304 ~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~ 381 (545)
.+.........++ .-.+ +++.|.+.++. +..+.+ ..|..+++|++|+|++|.++.+ |..++++++|++|+|+
T Consensus 15 ~v~c~~~~l~~ip~~~~~--~l~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPT--ETRLLDLGKNR---IKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp EEECCSCCCSSCCSCCCT--TCSEEECCSSC---CCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCcCCCCCCC--CCcEEECCCCc---cceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 3334444444455 3445 89999998887 566666 7899999999999999999966 7889999999999999
Q ss_pred CCCCCccChh-hhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCccC----CCCcccCcCCcccccccccccc--
Q 039831 382 IPSLKCLPSL-LCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSITL----PAPPKNYSSSLKNLIFTSALNP-- 453 (545)
Q Consensus 382 ~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~l----p~~~~~~~~~l~~L~~L~~~~~-- 453 (545)
+|.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|.+ |..+ ..+++|+.|.+..+
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF----SGLNSLEQLTLEKCNL 164 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS----TTCTTCCEEEEESCCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc----cCCCCCCEEECCCCcC
Confidence 9999999875 68999999999999988887 47899999999999998844 4456 88999999988766
Q ss_pred CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC------C------CC-Ceeec--------c--
Q 039831 454 SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE------S------KP-SRMVL--------S-- 510 (545)
Q Consensus 454 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~------~------~~-~~L~l--------P-- 510 (545)
.......+..+++|+.|++.++. .....+..+..+++|+.|+++++ + .. +.|++ |
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLN--INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCC--CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred cccChhHhcccCCCcEEeCCCCc--CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 33344568899999999999987 33344457888999999999862 0 01 33333 3
Q ss_pred CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 511 EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 511 ~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
.+..+++|+.|+|++|.+.+.+...+..++.|+.
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 4566778888888888877777666666666654
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=2.4e-18 Score=170.65 Aligned_cols=225 Identities=18% Similarity=0.144 Sum_probs=181.8
Q ss_pred EEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC---CccccCCCCCCEEE
Q 039831 304 RCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF---PPGLENLYLLKYLK 379 (545)
Q Consensus 304 ~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~ 379 (545)
.+.........++ ...+ +++.|.+.++. +..++. ..|..+++|++|++++|.++.. |..+..+++|++|+
T Consensus 11 ~l~c~~~~l~~ip~~~~~--~l~~L~L~~n~---l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPS--SATRLELESNK---LQSLPH-GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEECCSSCCSSCCSCCCT--TCCEEECCSSC---CCCCCT-TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred EEEcCCCCcccCCCCCCC--CCCEEECCCCc---cCccCH-hHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 3444444455555 4445 89999998887 566766 7789999999999999998854 67778899999999
Q ss_pred ccCCCCCccChhhhccccCcEEecCCCCCCccc--HhhhcccccceeeecCccC----CCCcccCcCCcccccccccccc
Q 039831 380 LNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP--EDIWMMQKLMHLNFGSITL----PAPPKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 380 l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~l----p~~~~~~~~~l~~L~~L~~~~~ 453 (545)
+++|.+..+|..+.++++|++|++++|.+..+| ..+..+++|++|++++|.+ |..+ +.+++|++|.+..+
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n 160 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMAGN 160 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT----TTCTTCCEEECTTC
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc----ccCcCCCEEECCCC
Confidence 999999999999999999999999999888887 4799999999999998843 4445 88999999987766
Q ss_pred --CC-CchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEeccC
Q 039831 454 --SS-CTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLSNTE 527 (545)
Q Consensus 454 --~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~ 527 (545)
.+ ..+..+..+++|+.|++++|. .....+..+..+++|+.|+|++ +.+.- + .+..+++|+.|+|++|.
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSH----NNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTT----SCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ccccccchhHHhhCcCCCEEECCCCC--cCCcCHHHhcCCCCCCEEECCC----CccCccChhhccCcccCCEeECCCCC
Confidence 22 356678899999999999987 4444467899999999999996 33322 3 67889999999999999
Q ss_pred Cchhhhhhhhccc-ccee
Q 039831 528 LMEDLINSELETQ-VLQV 544 (545)
Q Consensus 528 l~~~~~~~l~~~~-~l~~ 544 (545)
+.+.++..+..++ .|+.
T Consensus 235 l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CCBCSSSSCCCCCTTCCE
T ss_pred CcccCHHHHHhhhccCCE
Confidence 9998777776663 5554
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=175.41 Aligned_cols=228 Identities=17% Similarity=0.108 Sum_probs=182.2
Q ss_pred EEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccC
Q 039831 305 CIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNI 382 (545)
Q Consensus 305 l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~ 382 (545)
.....+....++ .-.+ +++.|.+.++. +..+++ ..|..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 36 c~~~~~~l~~iP~~~~~--~L~~L~l~~n~---i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTE--AVKSLDLSNNR---ITYISN-SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSSCCTTCCT--TCCEEECTTSC---CCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eeCCCCCcccccccccc--cCcEEECCCCc---CcccCH-HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 444455555555 4456 89999998887 556665 6899999999999999999966 56799999999999999
Q ss_pred CCCCccChh-hhccccCcEEecCCCCCCcccH--hhhcccccceeeecCcc----C-CCCcccCcCCcccccccccccc-
Q 039831 383 PSLKCLPSL-LCTLLNLETLEMPSSHIDQSPE--DIWMMQKLMHLNFGSIT----L-PAPPKNYSSSLKNLIFTSALNP- 453 (545)
Q Consensus 383 ~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~----l-p~~~~~~~~~l~~L~~L~~~~~- 453 (545)
|.++.+|.. ++++++|++|++++|.+..+|. .++.+++|++|++++|. + |..+ +.+++|+.|++..+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF----AGLTFLEELEIDASD 185 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT----TTCCEEEEEEEEETT
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc----cCCCCCCEEECCCCC
Confidence 999999987 8999999999999999999986 78999999999998762 2 3456 88999999987766
Q ss_pred -CCCchhhcCCCCCCCEEEEecccCccccchhH-hccCCCCCcEEEeecCCC--------------C--Ceeec------
Q 039831 454 -SSCTLDILFRLPSVRTLRISGDLSYYQSGVSK-SLCELHKLECLKLVNESK--------------P--SRMVL------ 509 (545)
Q Consensus 454 -~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~--------------~--~~L~l------ 509 (545)
.+..+..++.+++|++|+++++. ...++. .+..+++|+.|+++++.. + +.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQ---HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSC---STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred cCccCHHHHhccccCCeecCCCCc---cccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 34456778899999999999987 345554 355689999999997300 0 11211
Q ss_pred -------c-CCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 510 -------S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 510 -------P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
| ++..+++|+.|+|++|.+...|...+..++.|+.|
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEE
Confidence 5 67789999999999999998887777777877653
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.7e-17 Score=162.69 Aligned_cols=190 Identities=17% Similarity=0.182 Sum_probs=155.3
Q ss_pred CCcccEEEccCCCCCCCC-ccccCCCCCCEEEccCCCCCcc-ChhhhccccCcEEecCCCC-CCcc-cHhhhccccccee
Q 039831 349 FKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKLNIPSLKCL-PSLLCTLLNLETLEMPSSH-IDQS-PEDIWMMQKLMHL 424 (545)
Q Consensus 349 l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~-l~~l-p~~~~~L~~L~~L 424 (545)
.+.|+.|++++|.++.+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999999999775 5689999999999999999988 6679999999999999995 8988 5789999999999
Q ss_pred eecCccCCCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchh-HhccCCCCCcEEEeecC
Q 039831 425 NFGSITLPAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVS-KSLCELHKLECLKLVNE 501 (545)
Q Consensus 425 ~l~~~~lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~ 501 (545)
++++|.+.......+..+++|+.|.+..+ .......++.+++|+.|++++|. ...++ ..+..+++|+.|+|++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~- 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR---ISSVPERAFRGLHSLDRLLLHQ- 186 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCS-
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc---ccccCHHHhcCccccCEEECCC-
Confidence 99988443221111288999999987766 33333457889999999999987 33444 4688999999999996
Q ss_pred CCCCeeec--c-CCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 502 SKPSRMVL--S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 502 ~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
+.+.- | ++..+++|+.|++++|.+.+.+...+..++.|+.|
T Consensus 187 ---n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 187 ---NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp ---SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred ---CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 33322 6 88999999999999999999888878888877653
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=6.4e-18 Score=173.55 Aligned_cols=188 Identities=14% Similarity=0.140 Sum_probs=119.0
Q ss_pred CCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCCC
Q 039831 300 ANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLYL 374 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~ 374 (545)
..++.+.+.++.+...+ ..++ +|+.|.+.++. +..+++ ..|..+++|++|++++|.++.+|.. ++++++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFNA---IRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSC---CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCcEEECCCCcccccChhhccCCC--CcCEEECCCCC---CCcCCH-HHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 56777777777665443 4455 77777777666 455555 6677777777888777777777665 367777
Q ss_pred CCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCcccHhhhcccc---------------------------------
Q 039831 375 LKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSPEDIWMMQK--------------------------------- 420 (545)
Q Consensus 375 L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~--------------------------------- 420 (545)
|++|++++|.+..+++ .+.++++|++|++++|.+..++ ++.+++
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeec
Confidence 7777777777776644 4677777777777777666554 222333
Q ss_pred -------cceeeecCccCCCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCC
Q 039831 421 -------LMHLNFGSITLPAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELH 491 (545)
Q Consensus 421 -------L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 491 (545)
|+.|++++|.+.. + ..++.+++|+.|++..+ .+..+..+..+++|+.|++++|. ...++..+..++
T Consensus 221 ~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~l~ 295 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR---LVALNLYGQPIP 295 (390)
T ss_dssp ECCCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC---CCEEECSSSCCT
T ss_pred cccccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc---CcccCcccCCCC
Confidence 3333333332211 0 11256667777766555 23345567777778888877775 444555556677
Q ss_pred CCcEEEeec
Q 039831 492 KLECLKLVN 500 (545)
Q Consensus 492 ~L~~L~L~~ 500 (545)
+|+.|+|++
T Consensus 296 ~L~~L~L~~ 304 (390)
T 3o6n_A 296 TLKVLDLSH 304 (390)
T ss_dssp TCCEEECCS
T ss_pred CCCEEECCC
Confidence 777777775
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=5.6e-18 Score=183.88 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=125.7
Q ss_pred CCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCC
Q 039831 299 PANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLY 373 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~ 373 (545)
...++.|.+.++.+...+ ..++ +|+.|.+.++. +..+++ ..|..+++|++|+|++|.++.+|.. +++++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFNA---IRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSC---CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCC--CCCEEECCCCc---CCCCCH-HHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 356788888887766544 4555 78888887776 555666 6778888888888888888877766 47888
Q ss_pred CCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCcccHhhhcccccc------------------------------
Q 039831 374 LLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSPEDIWMMQKLM------------------------------ 422 (545)
Q Consensus 374 ~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~------------------------------ 422 (545)
+|++|++++|.+..+|+ .++++++|++|++++|.+..+| ++.+++|+
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 88888888888877654 5778888888888888776665 22333333
Q ss_pred ----------eeeecCccC--CCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhcc
Q 039831 423 ----------HLNFGSITL--PAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLC 488 (545)
Q Consensus 423 ----------~L~l~~~~l--p~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 488 (545)
.|++++|.+ +..+ +.+++|+.|++..+ .+..+..++.+++|+.|++++|. ...+|..+.
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~~~~~l----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~~ 298 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLTDTAWL----LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR---LVALNLYGQ 298 (597)
T ss_dssp EECSCCSCCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC---CCEEECSSS
T ss_pred cccccCCCCCEEECCCCCCCCChhh----ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC---CCCCCcccc
Confidence 333333322 1223 66677777766555 33345567777777777777765 444555566
Q ss_pred CCCCCcEEEeec
Q 039831 489 ELHKLECLKLVN 500 (545)
Q Consensus 489 ~l~~L~~L~L~~ 500 (545)
.+++|+.|+|++
T Consensus 299 ~l~~L~~L~Ls~ 310 (597)
T 3oja_B 299 PIPTLKVLDLSH 310 (597)
T ss_dssp CCTTCCEEECCS
T ss_pred cCCCCcEEECCC
Confidence 677777777775
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=2.1e-18 Score=188.45 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=147.4
Q ss_pred CCCeeEEEEEccCCCC------------------CC---C--cCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEE
Q 039831 299 PANFKRCIILGNQFDF------------------FP---L--EYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVL 355 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~------------------~~---~--~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 355 (545)
..+++.+.+..+.+.. ++ . .++ +|+.|.+.++. +....+ ..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~--~L~~L~L~~n~---l~~~~p-~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK--DLTDVEVYNCP---NLTKLP-TFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT--TCCEEEEECCT---TCSSCC-TTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC--CCCEEEecCCc---CCccCh-HHHhcCCCCCEE
Confidence 4577888888888776 55 3 566 88888888776 344445 677888888888
Q ss_pred EccCCC-CCC--CCccccCC------CCCCEEEccCCCCCccCh--hhhccccCcEEecCCCCCC-cccHhhhcccccce
Q 039831 356 NMGSAV-LDQ--FPPGLENL------YLLKYLKLNIPSLKCLPS--LLCTLLNLETLEMPSSHID-QSPEDIWMMQKLMH 423 (545)
Q Consensus 356 ~L~~~~-l~~--lp~~i~~L------~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~-~lp~~~~~L~~L~~ 423 (545)
++++|. ++. +|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .++.+++|++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 888887 773 67777766 788888888888778887 7788888888888888777 777 7777777888
Q ss_pred eeecCc---cCCCCcccCcCCccc-cccccccccC-CCchhhcCCCC--CCCEEEEecccCccccchhHhcc-------C
Q 039831 424 LNFGSI---TLPAPPKNYSSSLKN-LIFTSALNPS-SCTLDILFRLP--SVRTLRISGDLSYYQSGVSKSLC-------E 489 (545)
Q Consensus 424 L~l~~~---~lp~~~~~~~~~l~~-L~~L~~~~~~-~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~l~-------~ 489 (545)
|++++| .+|..+ +.+++ |+.|++..+. ...+..++.++ +|+.|++++|. .....|..+. .
T Consensus 358 L~L~~N~l~~lp~~l----~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 358 LNLAYNQITEIPANF----CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE--IGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EECCSSEEEECCTTS----EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC--TTTTTTCSSCTTCSSCCC
T ss_pred EECCCCccccccHhh----hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc--CCCcchhhhccccccccc
Confidence 877766 456666 66776 7777655541 12333333322 55555555554 3333333333 4
Q ss_pred CCCCcEEEeecC-----------CCC--Ceeec--------c--CCC-------CCCCccEEEEeccCCchhhhhhh-hc
Q 039831 490 LHKLECLKLVNE-----------SKP--SRMVL--------S--EYQ-------FPPSLIQLSLSNTELMEDLINSE-LE 538 (545)
Q Consensus 490 l~~L~~L~L~~~-----------~~~--~~L~l--------P--~l~-------~l~~L~~L~L~~~~l~~~~~~~l-~~ 538 (545)
+++|+.|+|+++ .++ +.|++ | .+. ++++|+.|+|++|.+...|.... ..
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 445555555541 001 12221 3 222 12378888888888886553332 25
Q ss_pred ccccee
Q 039831 539 TQVLQV 544 (545)
Q Consensus 539 ~~~l~~ 544 (545)
++.|+.
T Consensus 512 l~~L~~ 517 (636)
T 4eco_A 512 LPYLVG 517 (636)
T ss_dssp CTTCCE
T ss_pred CCCcCE
Confidence 666654
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=178.57 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=62.5
Q ss_pred CCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCC
Q 039831 300 ANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLL 375 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L 375 (545)
..++++.+..+.+.... ..++ +|+.|.+.++. +..+.+ ..|..+++|++|++++|.++.+|.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~---l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLS--KLRILIISHNR---IQYLDI-SVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCT--TCCEEECCSSC---CCEEEG-GGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccEEECCCCcccccChhhccccc--cccEEecCCCc---cCCcCh-HHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 45555555555554443 3344 55555555554 334444 4555556666666666655555544 55556
Q ss_pred CEEEccCCCCCc--cChhhhccccCcEEecCCCCCCcccHhhhccccc--ceeeecCc
Q 039831 376 KYLKLNIPSLKC--LPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKL--MHLNFGSI 429 (545)
Q Consensus 376 ~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L--~~L~l~~~ 429 (545)
++|++++|.++. +|..++++++|++|++++|.+.. ..+..+++| +.|++++|
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEEC
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecc
Confidence 666666655553 34555555556666555554433 223334444 44444433
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.74 E-value=3e-17 Score=165.65 Aligned_cols=221 Identities=16% Similarity=0.183 Sum_probs=161.9
Q ss_pred CCeeEEEEEccCCCCCC--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 300 ANFKRCIILGNQFDFFP--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
..++.+.+.++.+...+ ..++ +++.|.+.++.. .. .+ ..+..+++|++|++++|.+..++. ++.+++|++
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~--~L~~L~l~~n~~--~~-~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLT--KMYSLNLGANHN--LS-DL--SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCT--TCCEEECTTCTT--CC-CC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred CcCCEEECcCCcccCchhhccCC--ceeEEECCCCCC--cc-cc--cchhhCCCCcEEEecCCCcCCchh-hccCCCCCE
Confidence 45666666666655544 4455 677776666542 12 22 346777777777777777776654 677788888
Q ss_pred EEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCC--CcccCcCCccccccccccccCC
Q 039831 378 LKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFTSALNPSS 455 (545)
Q Consensus 378 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~--~~~~~~~~l~~L~~L~~~~~~~ 455 (545)
|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+.. .+ ..+++|++|++..+.-
T Consensus 182 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPL----ANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGG----TTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcch----hcCCCCCEEECCCCcc
Confidence 8888888777765 7778888888888887777766 8888999999999885432 15 7888999998877744
Q ss_pred CchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEeccCCchhh
Q 039831 456 CTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 456 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~~~ 532 (545)
..++.+..+++|+.|++++|. ...+ ..+..+++|+.|++++ ..+.- | +++.+++|+.|+|++|++.+.+
T Consensus 256 ~~~~~~~~l~~L~~L~l~~n~---l~~~-~~~~~l~~L~~L~L~~----n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 256 SDINAVKDLTKLKMLNVGSNQ---ISDI-SVLNNLSQLNSLFLNN----NQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCS----SCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCChhHhcCCCcCEEEccCCc---cCCC-hhhcCCCCCCEEECcC----CcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 445678899999999999987 3333 3588899999999996 33332 5 7788999999999999999875
Q ss_pred hhhhhcccccee
Q 039831 533 INSELETQVLQV 544 (545)
Q Consensus 533 ~~~l~~~~~l~~ 544 (545)
+ +..++.|+.
T Consensus 328 ~--~~~l~~L~~ 337 (347)
T 4fmz_A 328 P--LASLSKMDS 337 (347)
T ss_dssp G--GGGCTTCSE
T ss_pred C--hhhhhccce
Confidence 5 566666654
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=3.8e-17 Score=163.97 Aligned_cols=218 Identities=16% Similarity=0.113 Sum_probs=149.8
Q ss_pred CeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEE
Q 039831 301 NFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYL 378 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L 378 (545)
.++.+.+..+....++ ...+ +++.|.+.++. +..+.+ ..|..+++|++|++++|.++.+ |..++.+++|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~--~l~~L~l~~n~---i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNND---ISELRK-DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCT--TCCEEECCSSC---CCEECT-TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccccCCCCCC--CCeEEECCCCc---CCccCH-hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 3566777776666666 4445 88899888876 555655 6788899999999999998865 6778889999999
Q ss_pred EccCCCCCccChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccC------CCCcccCcCCc---------
Q 039831 379 KLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITL------PAPPKNYSSSL--------- 442 (545)
Q Consensus 379 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~l------p~~~~~~~~~l--------- 442 (545)
++++|.++.+|..+. ++|++|++++|.+..+| ..+..+++|++|++++|.+ |..+ +.+
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~~l~L~~L~l~~ 181 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF----DGLKLNYLRISE 181 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS----CSCCCSCCBCCS
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc----cCCccCEEECcC
Confidence 999999888887765 78999999999888887 4588899999999987744 2333 333
Q ss_pred -----------ccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCee-e
Q 039831 443 -----------KNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRM-V 508 (545)
Q Consensus 443 -----------~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L-~ 508 (545)
++|+.|++..+ ....+..+..+++|+.|++++|. .....+..+..+++|+.|+|++ +.+ .
T Consensus 182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~----N~l~~ 255 (332)
T 2ft3_A 182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTLRELHLDN----NKLSR 255 (332)
T ss_dssp SBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC--CCCCCTTGGGGCTTCCEEECCS----SCCCB
T ss_pred CCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc--CCcCChhHhhCCCCCCEEECCC----CcCee
Confidence 23333333322 22233456677788888887776 3333334677777788888875 222 1
Q ss_pred cc-CCCCCCCccEEEEeccCCchhhhhhh
Q 039831 509 LS-EYQFPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 509 lP-~l~~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
+| ++..+++|+.|++++|.+.+.+...+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHc
Confidence 25 55666666666666666666554443
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=176.56 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=113.7
Q ss_pred eEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEc
Q 039831 303 KRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKL 380 (545)
Q Consensus 303 r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l 380 (545)
+.+.+.++....++ .-.+ +++.|.+.++. +..+++ ..|..+++|++|++++|.++.+ |..++++++|++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~--~L~~L~Ls~n~---i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQ--KTTILNISQNY---ISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCCT--TCSEEECCSSC---CCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcccccccccc--cccEEECCCCc---ccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 56777777777776 3336 99999999888 666776 7899999999999999999976 788999999999999
Q ss_pred cCCCCCccChhhhccccCcEEecCCCCCCc--ccHhhhcccccceeeecCccCCC-CcccCcCCcccc--ccccc
Q 039831 381 NIPSLKCLPSLLCTLLNLETLEMPSSHIDQ--SPEDIWMMQKLMHLNFGSITLPA-PPKNYSSSLKNL--IFTSA 450 (545)
Q Consensus 381 ~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~lp~-~~~~~~~~l~~L--~~L~~ 450 (545)
++|.++.+|.. .+++|++|++++|.+.. +|..++.+++|++|++++|.+.. .+ +.+++| +.|.+
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~l 145 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV----LPIAHLNISKVLL 145 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGG----GGGTTSCEEEEEE
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhc----cccccceeeEEEe
Confidence 99999999887 89999999999998876 57899999999999999886653 23 555555 55543
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.8e-17 Score=178.68 Aligned_cols=121 Identities=13% Similarity=0.129 Sum_probs=73.1
Q ss_pred eEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEc
Q 039831 303 KRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKL 380 (545)
Q Consensus 303 r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l 380 (545)
+.+.+.++....++ .-.+ +++.|.+.++. +..+++ ..|..+++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~--~L~~L~Ls~N~---i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPP--RTKALSLSQNS---ISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCSCCTTSCT--TCCEEECCSSC---CCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCccCCCCCCC--CcCEEECCCCC---ccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 45555555555554 2234 66666666655 444554 5666666666666666666644 455666666666666
Q ss_pred cCCCCCccChhhhccccCcEEecCCCCCCccc--HhhhcccccceeeecCccC
Q 039831 381 NIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP--EDIWMMQKLMHLNFGSITL 431 (545)
Q Consensus 381 ~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~l 431 (545)
++|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 66666666655 5666666666666665543 5666666666666665543
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=3.1e-17 Score=178.32 Aligned_cols=230 Identities=18% Similarity=0.174 Sum_probs=140.1
Q ss_pred CCCeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCcc-ccCCC
Q 039831 299 PANFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPG-LENLY 373 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~-i~~L~ 373 (545)
..+++.+.+.++.+..++ ..++ +|+.|.+.++. +....+ ..+..+++|+.|++++|.+. .+|.. ++.++
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~--~L~~L~l~~n~---l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLS--TLKKLVLSANK---FENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCT--TCCEEECTTCC---CSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred ccCCCEEeccCCccCCCChhhcccc--cCCEEECccCC---cCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 356677777777766554 3445 77777777665 444544 56677777777777777765 45443 67777
Q ss_pred CCCEEEccCCCCCcc---ChhhhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCccC----CCC-cccCcCCccc
Q 039831 374 LLKYLKLNIPSLKCL---PSLLCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSITL----PAP-PKNYSSSLKN 444 (545)
Q Consensus 374 ~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~l----p~~-~~~~~~~l~~ 444 (545)
+|++|++++|.+... |..++.+++|++|++++|.+..+ |..++.+++|++|++++|.+ |.. + ..+++
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~ 426 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF----QNLHL 426 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT----TTCTT
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh----hCccc
Confidence 777777777776655 45677777777777777766655 46677777777777776632 222 4 66777
Q ss_pred ccccccccc--CCCchhhcCCCCCCCEEEEecccCcc-ccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCc
Q 039831 445 LIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYY-QSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSL 518 (545)
Q Consensus 445 L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L 518 (545)
|+.|++..+ ....+..++.+++|+.|++++|.-.. ....+..+..+++|+.|+|++ ..+.- | ++..+++|
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF----CDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT----SCCCEECTTTTTTCTTC
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC----CccCccChhhhccccCC
Confidence 777766555 33344556677777777777765110 011224566677777777764 11111 3 45555555
Q ss_pred cEEEEeccCCchhhhhhhhccccc
Q 039831 519 IQLSLSNTELMEDLINSELETQVL 542 (545)
Q Consensus 519 ~~L~L~~~~l~~~~~~~l~~~~~l 542 (545)
+.|+|++|++.+.++..+..++.|
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CEEECCCCccCcCChhHhCccccc
Confidence 555555555555554444444433
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.8e-17 Score=164.62 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=142.9
Q ss_pred cCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhcccc
Q 039831 318 EYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLN 397 (545)
Q Consensus 318 ~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~ 397 (545)
.++ ++++|.+.++. +..+ +.+..+++|++|++++|.++.++. ++.+++|++|++++|.++.+| .+..+++
T Consensus 39 ~l~--~L~~L~l~~~~---i~~l---~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 39 DLD--GITTLSAFGTG---VTTI---EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHH--TCCEEECTTSC---CCCC---TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HcC--CcCEEEeeCCC---ccCc---hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 355 78888887766 3333 346778888888888888887776 888888888888888888775 5788888
Q ss_pred CcEEecCCCCCCcccHhhhcccccceeeecCccCCC--CcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecc
Q 039831 398 LETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGD 475 (545)
Q Consensus 398 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~--~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 475 (545)
|++|++++|.+..+|. +..+++|++|++++|.+.. .+ +.+++|+.|++..+.-..+..+..+++|+.|++++|
T Consensus 109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183 (308)
T ss_dssp CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccc----cCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC
Confidence 8888888888888775 8888888888888774432 24 777788888776663333444788888888888887
Q ss_pred cCccccchhHhccCCCCCcEEEeecCCCCCeeec-cCCCCCCCccEEEEeccCCchhhhh
Q 039831 476 LSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-SEYQFPPSLIQLSLSNTELMEDLIN 534 (545)
Q Consensus 476 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P~l~~l~~L~~L~L~~~~l~~~~~~ 534 (545)
. ...++. +..+++|+.|+|++ +.+.- |.+..+++|+.|+|++|++.+.|..
T Consensus 184 ~---l~~~~~-l~~l~~L~~L~L~~----N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 184 K---ISDISP-LASLPNLIEVHLKN----NQISDVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp C---CCCCGG-GGGCTTCCEEECTT----SCCCBCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred c---cCcChh-hcCCCCCCEEEccC----CccCccccccCCCCCCEEEccCCeeecCCee
Confidence 6 333332 77888888888885 33322 3467788888999998888775543
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=2.6e-17 Score=172.49 Aligned_cols=123 Identities=16% Similarity=0.143 Sum_probs=104.0
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CC-CccccCCCCCCEEEccCCCCCcc-ChhhhccccCc
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QF-PPGLENLYLLKYLKLNIPSLKCL-PSLLCTLLNLE 399 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l-p~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~ 399 (545)
+++.|++.++. +..+.+ ..|.++++|++|++++|.+. .+ |..++++++|++|++++|.+..+ |..++++++|+
T Consensus 31 ~l~~L~Ls~n~---i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 31 HVNYVDLSLNS---IAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp TCCEEECCSSC---CCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred ccCEEEecCCc---cCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 89999999887 566666 78999999999999999986 45 56799999999999999999887 67899999999
Q ss_pred EEecCCCCCCc-ccHh--hhcccccceeeecCccC----CCC-cccCcCCcccccccccccc
Q 039831 400 TLEMPSSHIDQ-SPED--IWMMQKLMHLNFGSITL----PAP-PKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 400 ~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~l----p~~-~~~~~~~l~~L~~L~~~~~ 453 (545)
+|++++|.+.. +|.. ++.+++|++|++++|.+ |.. + +.+++|+.|++..+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n 164 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF----LNMRRFHVLDLTFN 164 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG----GGCTTCCEEECTTC
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc----CCCCcccEEeCCCC
Confidence 99999998876 4544 99999999999998844 333 4 78888888876554
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=184.45 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=97.8
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L 372 (545)
.+..++.|.+..+.+.... ..++ +|+.|.+.++.. ...+.+ ..|.++++|++|+|++|.+..+ |..++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~--~L~~LdLs~n~~--~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLE--QLQLLELGSQYT--PLTIDK-EAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCC--SCSEEEECTTCC--CCEECT-TTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccc--cCeEEeCCCCCC--ccccCH-HHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 4678889999988877553 5566 888888887753 333445 6788888888888888888854 7788888
Q ss_pred CCCCEEEccCCCCCc-cChh--hhccccCcEEecCCCCCCccc--HhhhcccccceeeecCcc
Q 039831 373 YLLKYLKLNIPSLKC-LPSL--LCTLLNLETLEMPSSHIDQSP--EDIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~ 430 (545)
.+|++|++++|.+.. +|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 888888888888765 4554 788888888888888776653 568888888888887663
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=4.5e-17 Score=177.07 Aligned_cols=188 Identities=21% Similarity=0.162 Sum_probs=121.5
Q ss_pred cccEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcc-cHhhhcccccceeeecC
Q 039831 351 YLRVLNMGSAVLDQFPP-GLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGS 428 (545)
Q Consensus 351 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~ 428 (545)
.|+.|++++|.++.+|. .++.+++|++|++++|.++.+|..+.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 45556666666665543 36777888888888888888888788888888888888877766 45777888888888877
Q ss_pred cc----CCCC-cccCcCCccccccccccccCCC--c--hhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEee
Q 039831 429 IT----LPAP-PKNYSSSLKNLIFTSALNPSSC--T--LDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 499 (545)
Q Consensus 429 ~~----lp~~-~~~~~~~l~~L~~L~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 499 (545)
|. +|.. + +.+++|+.|++..+.-. . +..++.+++|+.|++++|. .....+..+..+++|+.|+++
T Consensus 335 n~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 335 NTKRLELGTGCL----ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp CSSCCBCCSSTT----TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECT
T ss_pred CCcccccchhhh----hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECC
Confidence 63 3333 4 67777777776555211 1 4456777778888887776 344445667777777777777
Q ss_pred cC------------CCC--Ceeec---------c-CCCCCCCccEEEEeccCCchhhh---hhhhcccccee
Q 039831 500 NE------------SKP--SRMVL---------S-EYQFPPSLIQLSLSNTELMEDLI---NSELETQVLQV 544 (545)
Q Consensus 500 ~~------------~~~--~~L~l---------P-~l~~l~~L~~L~L~~~~l~~~~~---~~l~~~~~l~~ 544 (545)
++ .++ +.|++ | +++.+++|++|+|++|.+.+..+ ..+..++.|++
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 52 001 22222 4 56667777777777777765322 23455555544
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.2e-17 Score=160.83 Aligned_cols=202 Identities=21% Similarity=0.196 Sum_probs=146.0
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChh-hhcc
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSL-LCTL 395 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L 395 (545)
..++ +++.|.+.++. +..+ +.+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+|+. ++++
T Consensus 38 ~~l~--~L~~L~l~~~~---i~~~---~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 38 NELN--SIDQIIANNSD---IKSV---QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHT--TCCEEECTTSC---CCCC---TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cccc--ceeeeeeCCCC---cccc---cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCC
Confidence 3445 78888877766 3333 44677888888888888887753 678888888888888888887665 5788
Q ss_pred ccCcEEecCCCCCCccc-HhhhcccccceeeecCccCCCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEE
Q 039831 396 LNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRI 472 (545)
Q Consensus 396 ~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l 472 (545)
++|++|++++|.+..+| ..++.+++|++|++++|.+..-....++.+++|+.|++..+ .+..+..++.+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 88888888888888877 44788888888888877432111111277788888877666 3333344678889999999
Q ss_pred ecccCccccchhHhccCCCCCcEEEeecCCCCCeeeccCCCCCCCccEEEEeccCCchhhhhhhh
Q 039831 473 SGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVLSEYQFPPSLIQLSLSNTELMEDLINSEL 537 (545)
Q Consensus 473 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~lP~l~~l~~L~~L~L~~~~l~~~~~~~l~ 537 (545)
++|. .....+..+..+++|+.|+|+++ |+.+.+++|+.|++++|.+.+..+..+.
T Consensus 189 ~~N~--l~~~~~~~~~~l~~L~~L~l~~N--------~~~~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 189 YQNQ--LKSVPDGVFDRLTSLQYIWLHDN--------PWDCTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CSSC--CSCCCTTTTTTCTTCCEEECCSS--------CBCCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCCc--CCccCHHHHhCCcCCCEEEccCC--------CccccCcHHHHHHHHHHhCCCcccCccc
Confidence 9887 33444456788899999999862 3456788888888888888876554443
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=5.5e-18 Score=185.14 Aligned_cols=209 Identities=12% Similarity=0.074 Sum_probs=163.5
Q ss_pred CcCCCCceeEEEecCCCCCCCCCC-----------------cchhhhc--CCCcccEEEccCCCCC-CCCccccCCCCCC
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPK-----------------DCEIFFK--RFKYLRVLNMGSAVLD-QFPPGLENLYLLK 376 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~ 376 (545)
..++ +|+.|.+.++. +... .+ ..+. ++++|++|++++|.+. .+|..++++++|+
T Consensus 203 ~~l~--~L~~L~Ls~n~---l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 203 MRLT--KLRQFYMGNSP---FVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp GGCT--TCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred hccc--CCCEEECcCCc---cccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4566 99999999888 4441 34 5666 9999999999999976 7899999999999
Q ss_pred EEEccCCC-CC--ccChhhhcc------ccCcEEecCCCCCCcccH--hhhcccccceeeecCc----cCCCCcccCcCC
Q 039831 377 YLKLNIPS-LK--CLPSLLCTL------LNLETLEMPSSHIDQSPE--DIWMMQKLMHLNFGSI----TLPAPPKNYSSS 441 (545)
Q Consensus 377 ~L~l~~~~-i~--~lp~~i~~L------~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~----~lp~~~~~~~~~ 441 (545)
+|++++|. ++ .+|..++++ ++|++|++++|.+..+|. .++.+++|++|++++| .+| .+ +.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~----~~ 351 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF----GS 351 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC----EE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh----CC
Confidence 99999998 87 489999887 999999999999999998 9999999999999987 456 66 88
Q ss_pred cccccccccccc-CCCchhhcCCCCC-CCEEEEecccCccccchhHhccCCC--CCcEEEeecCCCCCeeec--c-CCC-
Q 039831 442 LKNLIFTSALNP-SSCTLDILFRLPS-VRTLRISGDLSYYQSGVSKSLCELH--KLECLKLVNESKPSRMVL--S-EYQ- 513 (545)
Q Consensus 442 l~~L~~L~~~~~-~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~l~--~L~~L~L~~~~~~~~L~l--P-~l~- 513 (545)
+++|+.|.+..+ -...+..++.+++ |+.|++++|. ...+|..+..++ +|+.|+++++ .+.- | ++.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~---l~~lp~~~~~~~l~~L~~L~Ls~N----~l~~~~p~~l~~ 424 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK---LKYIPNIFDAKSVSVMSAIDFSYN----EIGSVDGKNFDP 424 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC---CSSCCSCCCTTCSSCEEEEECCSS----CTTTTTTCSSCT
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc---CcccchhhhhcccCccCEEECcCC----cCCCcchhhhcc
Confidence 999999987766 2245566888999 9999999987 447787777765 8999999972 2211 3 333
Q ss_pred ------CCCCccEEEEeccCCchhhhhhhhccccce
Q 039831 514 ------FPPSLIQLSLSNTELMEDLINSELETQVLQ 543 (545)
Q Consensus 514 ------~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~ 543 (545)
.+++|++|+|++|.+...|...+..++.|+
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 455666666666666655544444444444
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=1.6e-17 Score=180.61 Aligned_cols=216 Identities=16% Similarity=0.159 Sum_probs=115.4
Q ss_pred CCeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC---CccccCCCCC
Q 039831 300 ANFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF---PPGLENLYLL 375 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L 375 (545)
..++.+.+..+....++ ..++ +|+.|.+.++.. ... ..+..+++|+.|++++|.++.. |..++.+++|
T Consensus 307 ~~L~~L~l~~n~l~~lp~~~l~--~L~~L~l~~n~~-----~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQFPTLDLP--FLKSLTLTMNKG-----SIS-FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCCSEEEEESCCCSSCCCCCCS--SCCEEEEESCSS-----CEE-CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred ccCCEEEcccccCcccccCCCC--ccceeeccCCcC-----ccc-hhhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 35566666666554443 2333 666666655532 011 2344556666666666665533 5555666666
Q ss_pred CEEEccCCCCCccChhhhccccCcEEecCCCCCCccc--HhhhcccccceeeecCcc----CCCCcccCcCCcccccccc
Q 039831 376 KYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP--EDIWMMQKLMHLNFGSIT----LPAPPKNYSSSLKNLIFTS 449 (545)
Q Consensus 376 ~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~----lp~~~~~~~~~l~~L~~L~ 449 (545)
++|++++|.+..+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|. .|..+ +.+++|++|+
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~ 454 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF----LGLTSLNTLK 454 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT----TTCTTCCEEE
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh----cCCCCCCEEE
Confidence 6666666666666655666666666666666544443 355566666666666552 23334 5556666665
Q ss_pred cccc--CC-CchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEE
Q 039831 450 ALNP--SS-CTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSL 523 (545)
Q Consensus 450 ~~~~--~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L 523 (545)
+..+ .+ ..+..++.+++|+.|++++|. .....+..+..+++|++|+|++ +.+.- | +++.+++|+.|+|
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQ--LEQISWGVFDTLHRLQLLNMSH----NNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS----SCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCc--CCccChhhhcccccCCEEECCC----CcCCCcCHHHccCCCcCCEEEC
Confidence 5444 12 133445556666666666654 3333345556666666666654 12211 4 5555555666666
Q ss_pred eccCCchhhh
Q 039831 524 SNTELMEDLI 533 (545)
Q Consensus 524 ~~~~l~~~~~ 533 (545)
++|++...|.
T Consensus 529 ~~N~l~~~p~ 538 (606)
T 3vq2_A 529 SFNRIETSKG 538 (606)
T ss_dssp TTSCCCCEES
T ss_pred CCCcCcccCH
Confidence 6555554443
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=2.2e-17 Score=182.07 Aligned_cols=235 Identities=17% Similarity=0.173 Sum_probs=143.6
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCc-cccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPP-GLENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L 372 (545)
.+.+++++.+.++.+...+ ..++ +|++|.+.++. +....+ ..|.++++|++|++++|.++.+|. .++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~---l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYS--QLTSLDVGFNT---ISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGT--TCSEEECCSSC---CCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCC--cCcEEECCCCc---cCccCH-HHHhcccCcCEEECCCCccCccChhhhccC
Confidence 4567788888887766554 4455 78888777765 455555 677778888888888888777765 47778
Q ss_pred CCCCEEEccCCCCCccC-hhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccCCCCcccCc--CCccccccc
Q 039831 373 YLLKYLKLNIPSLKCLP-SLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYS--SSLKNLIFT 448 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp~~~~~~~--~~l~~L~~L 448 (545)
++|++|++++|.+..+| ..++++++|++|++++|.+...+ ..++++++|++|++++|.+.......+ ..+++|+.|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 88888888888777776 45777888888888888666553 567777788888877764321110000 234566666
Q ss_pred ccccc--CCCchhhcCCC---------------------------CCCCEEEEecccCccccchhHhccCCC--CCcEEE
Q 039831 449 SALNP--SSCTLDILFRL---------------------------PSVRTLRISGDLSYYQSGVSKSLCELH--KLECLK 497 (545)
Q Consensus 449 ~~~~~--~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~l~~l~--~L~~L~ 497 (545)
++..+ .+..+..+..+ ++|+.|+++++. .....+..+..++ +|+.|+
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~--l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ--LSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC--CCEECTTTTGGGGGSCCCEEE
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc--ccccChhHhhccCcCCCCEEE
Confidence 65444 22222222222 344455555443 2223334444443 366666
Q ss_pred eecCCCCCeeec--c-CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 498 LVNESKPSRMVL--S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 498 L~~~~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
|++ +.+.- | +++.+++|++|+|++|.+.+.+...+.+++.|++
T Consensus 255 Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 255 LSY----NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp CTT----SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred CCC----CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 664 22221 4 6667777777777777777666555555555543
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.5e-16 Score=154.75 Aligned_cols=172 Identities=24% Similarity=0.271 Sum_probs=104.0
Q ss_pred CcccEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCCccChhh-hccccCcEEecCCCCCCccc-Hhhhcccccceeee
Q 039831 350 KYLRVLNMGSAVLDQFPP-GLENLYLLKYLKLNIPSLKCLPSLL-CTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNF 426 (545)
Q Consensus 350 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l 426 (545)
+.|+.|++++|.++.+|. .+..+++|++|++++|.++.+|..+ .++++|++|++++|.+..+| ..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 356666666666665543 4666666666666666666665543 55666666666666666665 34566666666666
Q ss_pred cCccC---CC-CcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeec
Q 039831 427 GSITL---PA-PPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 427 ~~~~l---p~-~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
++|.+ |. .+ +.+++|++|++..+ .......++.+++|+.|++++|. .....+..+..+++|+.|+|++
T Consensus 117 ~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 117 DRNQLKSLPPRVF----DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCccCeeCHHHh----CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc--CcEeChhHhccCCCcCEEECCC
Confidence 65532 22 23 55666666655444 22222336677778888887775 2222234577778888888875
Q ss_pred CCCCCeeec-c--CCCCCCCccEEEEeccCCchh
Q 039831 501 ESKPSRMVL-S--EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 501 ~~~~~~L~l-P--~l~~l~~L~~L~L~~~~l~~~ 531 (545)
+.+.- | .+..+++|+.|+|++|++..+
T Consensus 191 ----N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 191 ----NQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp ----SCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ----CcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 22222 3 567788888888888887664
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=6.8e-17 Score=169.99 Aligned_cols=224 Identities=19% Similarity=0.167 Sum_probs=142.7
Q ss_pred CCeeEEEEEccCCCCCC--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 300 ANFKRCIILGNQFDFFP--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
..++.+.+..+.+..++ ..++ +|+.|.+.++. +..++ + +..+++|++|++++|.++.+++ ++++++|++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~--~L~~L~Ls~n~---l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLN--NLTQINFSNNQ---LTDIT--P-LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCT--TCCEEECCSSC---CCCCG--G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred ccccEEecCCCCCccCcchhhhc--CCCEEECCCCc---cCCch--h-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 35677888777766655 5566 88888888776 44443 3 7888888888888888887766 888888888
Q ss_pred EEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCc-cCCCCcccCcCCccccccccccccCCC
Q 039831 378 LKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI-TLPAPPKNYSSSLKNLIFTSALNPSSC 456 (545)
Q Consensus 378 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~-~lp~~~~~~~~~l~~L~~L~~~~~~~~ 456 (545)
|++++|.++.+|. +.++++|++|++++|.+..+|. ++.+++|++|+++++ .-...+ +.+++|+.|++..+.-.
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~----~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPL----ANLTTLERLDISSNKVS 190 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGG----TTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhh----ccCCCCCEEECcCCcCC
Confidence 8888888888865 7888888888888887777764 667777777766532 111123 55666666655544333
Q ss_pred chhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC---------CCC--Ceeec--------cCCCCCCC
Q 039831 457 TLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE---------SKP--SRMVL--------SEYQFPPS 517 (545)
Q Consensus 457 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~---------~~~--~~L~l--------P~l~~l~~ 517 (545)
.+..+..+++|+.|++++|. ...++. ++.+++|+.|+++++ .++ +.|++ |.+..+++
T Consensus 191 ~~~~l~~l~~L~~L~l~~n~---l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 191 DISVLAKLTNLESLIATNNQ---ISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSC---CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred CChhhccCCCCCEEEecCCc---cccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 33345555666666666554 111111 444555555555541 001 22222 23566788
Q ss_pred ccEEEEeccCCchhhhhhhhcccccee
Q 039831 518 LIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 518 L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
|+.|++++|.+.+.+. +..++.|+.
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred CCEEECCCCccCcccc--ccCCCccCe
Confidence 8888888888877554 555555554
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.6e-17 Score=185.58 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=146.6
Q ss_pred CCCeeEEEEEccCCCC------------------CC---C--cCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEE
Q 039831 299 PANFKRCIILGNQFDF------------------FP---L--EYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVL 355 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~------------------~~---~--~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 355 (545)
..+++.|.+..+.+.. ++ . .++ +|+.|.+.++. +....+ ..|.++++|+.|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~--~L~~L~Ls~N~---l~~~iP-~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK--DLTDVELYNCP---NMTQLP-DFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT--TCCEEEEESCT---TCCSCC-GGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC--CCCEEECcCCC---CCccCh-HHHhCCCCCCEE
Confidence 4577888888888776 55 2 456 88888888776 334445 677888888888
Q ss_pred EccCCC-CCC--CCccccCCC-------CCCEEEccCCCCCccCh--hhhccccCcEEecCCCCCCcccHhhhcccccce
Q 039831 356 NMGSAV-LDQ--FPPGLENLY-------LLKYLKLNIPSLKCLPS--LLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMH 423 (545)
Q Consensus 356 ~L~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~ 423 (545)
++++|. ++. +|..++.+. +|++|++++|.+..+|. .++++++|++|++++|.+..+| .++.+++|+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence 888887 763 676665554 78888888887777777 7778888888888888777777 6777777888
Q ss_pred eeecCc---cCCCCcccCcCCccc-cccccccccC-CCchhhcCCC-------------------------------CCC
Q 039831 424 LNFGSI---TLPAPPKNYSSSLKN-LIFTSALNPS-SCTLDILFRL-------------------------------PSV 467 (545)
Q Consensus 424 L~l~~~---~lp~~~~~~~~~l~~-L~~L~~~~~~-~~~~~~l~~l-------------------------------~~L 467 (545)
|++++| .+|..+ ..+++ |+.|.+..+. ...+..+..+ ++|
T Consensus 600 L~Ls~N~l~~lp~~l----~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDF----CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp EECCSSCCSCCCTTS----CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred EECcCCccccchHHH----hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 877766 345555 66776 7777655541 1222222222 244
Q ss_pred CEEEEecccCccccchhHhc-cCCCCCcEEEeecCCCCCee-ecc-CCC--------CCCCccEEEEeccCCchhhhhhh
Q 039831 468 RTLRISGDLSYYQSGVSKSL-CELHKLECLKLVNESKPSRM-VLS-EYQ--------FPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 468 ~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~L-~lP-~l~--------~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
+.|++++|. ...+|..+ ..+++|+.|+|++ +.+ .+| ++. +|++|+.|+|++|++...|....
T Consensus 676 ~~L~Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~----N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 676 STVTLSYNE---IQKFPTELFATGSPISTIILSN----NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp EEEECCSSC---CCSCCHHHHHTTCCCSEEECCS----CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred CEEEccCCc---CCccCHHHHccCCCCCEEECCC----CcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence 444444443 22344333 3566666666664 222 124 322 23489999999999986554332
Q ss_pred -hccccceeC
Q 039831 537 -LETQVLQVV 545 (545)
Q Consensus 537 -~~~~~l~~l 545 (545)
..++.|+.|
T Consensus 749 ~~~l~~L~~L 758 (876)
T 4ecn_A 749 ATTLPYLSNM 758 (876)
T ss_dssp TTTCTTCCEE
T ss_pred hccCCCcCEE
Confidence 266666543
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=6e-17 Score=176.09 Aligned_cols=226 Identities=18% Similarity=0.175 Sum_probs=182.4
Q ss_pred CCCeeEEEEEccCCCCCC--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCccccCCCCC
Q 039831 299 PANFKRCIILGNQFDFFP--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGLENLYLL 375 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L 375 (545)
..+++.+.+.++.....+ ..++ +++.|.+.++. +..++ .+ .+++|+.|++++|... .. .++.+++|
T Consensus 284 l~~L~~L~l~~~~~~~l~~l~~~~--~L~~L~l~~n~---l~~lp---~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L 352 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQ---LKQFP---TL-DLPFLKSLTLTMNKGSISF--KKVALPSL 352 (606)
T ss_dssp GTTCSEEEEESCCCCCCCCCCTTC--CCSEEEEESCC---CSSCC---CC-CCSSCCEEEEESCSSCEEC--CCCCCTTC
T ss_pred CCCCCEEEecCccchhhhhccccc--cCCEEEccccc---Ccccc---cC-CCCccceeeccCCcCccch--hhccCCCC
Confidence 356788888888877666 5566 89999998887 43343 23 8899999999998543 33 56789999
Q ss_pred CEEEccCCCCCcc---ChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccC----C-CCcccCcCCcccccc
Q 039831 376 KYLKLNIPSLKCL---PSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITL----P-APPKNYSSSLKNLIF 447 (545)
Q Consensus 376 ~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~l----p-~~~~~~~~~l~~L~~ 447 (545)
++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|++++|.+ | ..+ +.+++|+.
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~ 428 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF----LSLEKLLY 428 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTT----TTCTTCCE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhh----hccccCCE
Confidence 9999999998766 7889999999999999999999998899999999999998732 2 355 88999999
Q ss_pred cccccc--CCCchhhcCCCCCCCEEEEecccCcccc-chhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEE
Q 039831 448 TSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQS-GVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQL 521 (545)
Q Consensus 448 L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L 521 (545)
|++..+ .+..+..++.+++|+.|++++|. ... .+|..++.+++|+.|+|++ +.+.- | +++.+++|+.|
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNS--FKDNTLSNVFANTTNLTFLDLSK----CQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTT----SCCCEECTTTTTTCTTCCEE
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCc--CCCcchHHhhccCCCCCEEECCC----CcCCccChhhhcccccCCEE
Confidence 987766 34456678899999999999987 333 3678899999999999996 33322 6 88999999999
Q ss_pred EEeccCCchhhhhhhhccccceeC
Q 039831 522 SLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 522 ~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
+|++|++.+.++..+..++.|++|
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred ECCCCcCCCcCHHHccCCCcCCEE
Confidence 999999999888888888887764
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.5e-17 Score=175.64 Aligned_cols=218 Identities=12% Similarity=0.102 Sum_probs=139.8
Q ss_pred CeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCC
Q 039831 301 NFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLK 376 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 376 (545)
+++.|.+.++.+.... ..++ +|+.|.+.++. +...+ .+..+++|++|+|++|.++.+|. .++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~---l~~~~---~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNV---LYETL---DLESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT--TCCEEECTTSC---CEEEE---ECTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC--CCCEEEeeCCC---CCCCc---ccccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 4555555555544332 2333 55555555444 22221 14555555555555555544332 24555
Q ss_pred EEEccCCCCCccChhhhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCccCC----CCcccCcCCcccccccccc
Q 039831 377 YLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSITLP----APPKNYSSSLKNLIFTSAL 451 (545)
Q Consensus 377 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~lp----~~~~~~~~~l~~L~~L~~~ 451 (545)
+|++++|.+..+|. ..+++|++|++++|.+..+ |..++.+++|++|++++|.+. ..+ .+.+++|+.|++.
T Consensus 103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls 177 (487)
T 3oja_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQ 177 (487)
T ss_dssp EEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECT
T ss_pred EEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecC
Confidence 55666655555543 2467888888888888777 457888899999999887543 333 1367888888877
Q ss_pred ccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeee-cc-CCCCCCCccEEEEeccCCc
Q 039831 452 NPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMV-LS-EYQFPPSLIQLSLSNTELM 529 (545)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~-lP-~l~~l~~L~~L~L~~~~l~ 529 (545)
.+.-.....+..+++|+.|++++|. ...+|..+..+++|+.|+|++ +.+. +| ++..+++|+.|++++|.+.
T Consensus 178 ~N~l~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~l~~L~~L~Ls~----N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 178 YNFIYDVKGQVVFAKLKTLDLSSNK---LAFMGPEFQSAAGVTWISLRN----NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TSCCCEEECCCCCTTCCEEECCSSC---CCEECGGGGGGTTCSEEECTT----SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccccccccccCCCCCEEECCCCC---CCCCCHhHcCCCCccEEEecC----CcCcccchhhccCCCCCEEEcCCCCCc
Confidence 6644344455578899999999886 445666688899999999986 3332 37 8888999999999999998
Q ss_pred hhhh-hhhhccccc
Q 039831 530 EDLI-NSELETQVL 542 (545)
Q Consensus 530 ~~~~-~~l~~~~~l 542 (545)
+..+ ..+..++.|
T Consensus 251 c~~~~~~~~~l~~L 264 (487)
T 3oja_A 251 CGTLRDFFSKNQRV 264 (487)
T ss_dssp HHHHHHHHTTCHHH
T ss_pred CcchHHHHHhCCCC
Confidence 5433 334444433
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=3.7e-17 Score=159.60 Aligned_cols=195 Identities=18% Similarity=0.125 Sum_probs=149.2
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCCCCCCEEEccCCCCCccC-hhhhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKLNIPSLKCLP-SLLCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~~ 400 (545)
+++.|.+.++. +..+.+ ..|..+++|++|++++|.++.++ ..++.+++|++|++++|.++.++ ..+.++++|++
T Consensus 29 ~l~~L~ls~n~---l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 29 STKNLDLSFNP---LRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TCCEEECTTCC---CCEECT-TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CccEEECCCCc---ccccCH-hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 78999888776 555555 67888999999999999988665 46888999999999999988876 46889999999
Q ss_pred EecCCCCCCcccH-hhhcccccceeeecCcc-----CCCCcccCcCCcccccccccccc--CCCchhhcCCCCCCC----
Q 039831 401 LEMPSSHIDQSPE-DIWMMQKLMHLNFGSIT-----LPAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVR---- 468 (545)
Q Consensus 401 L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~-----lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~---- 468 (545)
|++++|.+..++. .++.+++|++|++++|. +|..+ +.+++|+.|++..+ ....+..+..+.+|+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG----GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh----ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 9999998888874 68899999999998874 35556 88888998887665 222233444444444
Q ss_pred EEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec-c--CCCCCCCccEEEEeccCCchhh
Q 039831 469 TLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-S--EYQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P--~l~~l~~L~~L~L~~~~l~~~~ 532 (545)
.|+++++. ...++.......+|+.|+|++ +.+.- | .+..+++|+.|+|++|++.++.
T Consensus 181 ~L~ls~n~---l~~~~~~~~~~~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 181 SLDLSLNP---MNFIQPGAFKEIRLKELALDT----NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEECCSSC---CCEECTTSSCSCCEEEEECCS----SCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred eeecCCCc---ccccCccccCCCcccEEECCC----CceeecCHhHhcccccccEEEccCCcccccC
Confidence 78888876 444444444455899999986 33332 4 5788999999999999999865
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.6e-17 Score=165.56 Aligned_cols=222 Identities=12% Similarity=0.084 Sum_probs=145.1
Q ss_pred CeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCC
Q 039831 301 NFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLK 376 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 376 (545)
+++.+.+.++.+.... ..++ +|+.|.+.++. +... ..+..+++|++|++++|.++.+| ..++|+
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~---l~~~---~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNV---LYET---LDLESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSC---CEEE---EEETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred CCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCc---CCcc---hhhhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 4555666555554443 3444 56666555554 2222 12555566666666666555433 225566
Q ss_pred EEEccCCCCCccChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccCCCCcc-cCcCCccccccccccccC
Q 039831 377 YLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFTSALNPS 454 (545)
Q Consensus 377 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp~~~~-~~~~~l~~L~~L~~~~~~ 454 (545)
+|++++|.++.+|.. .+++|++|++++|.+..++ ..++.+++|++|++++|.+..... .+...+++|+.|++..+.
T Consensus 103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 666666666655432 4678899999999888886 478889999999999885532110 112467888888877664
Q ss_pred CCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCC-Ceeecc-CCCCCCCccEEEEeccCCch-h
Q 039831 455 SCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP-SRMVLS-EYQFPPSLIQLSLSNTELME-D 531 (545)
Q Consensus 455 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~L~lP-~l~~l~~L~~L~L~~~~l~~-~ 531 (545)
-........+++|+.|++++|. ...++..+..+++|+.|+|++ +. ..+ | .+..+++|+.|+|++|.+.+ .
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~~~l~~L~~L~L~~--N~l~~l--~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 181 IYDVKGQVVFAKLKTLDLSSNK---LAFMGPEFQSAAGVTWISLRN--NKLVLI--EKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CCEEECCCCCTTCCEEECCSSC---CCEECGGGGGGTTCSEEECTT--SCCCEE--CTTCCCCTTCCEEECTTCCCBHHH
T ss_pred CcccccccccccCCEEECCCCc---CCcchhhhcccCcccEEECcC--Ccccch--hhHhhcCCCCCEEEccCCCccCcC
Confidence 3334445568899999999987 555666688999999999986 22 333 7 88889999999999999994 3
Q ss_pred hhhhhhccccce
Q 039831 532 LINSELETQVLQ 543 (545)
Q Consensus 532 ~~~~l~~~~~l~ 543 (545)
....+..++.|+
T Consensus 254 ~~~~~~~~~~L~ 265 (317)
T 3o53_A 254 LRDFFSKNQRVQ 265 (317)
T ss_dssp HHHHHHTCHHHH
T ss_pred HHHHHhccccce
Confidence 444445554443
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.4e-16 Score=156.64 Aligned_cols=190 Identities=17% Similarity=0.118 Sum_probs=112.8
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCccChhhhccccCcEE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETL 401 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 401 (545)
+++.+.+.++. +..++. .. .+.++.|++++|.++.+ |..+..+++|++|++++|.++.+|.. +.+++|++|
T Consensus 11 ~l~~l~~~~~~---l~~ip~-~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 11 SHLEVNCDKRN---LTALPP-DL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp TCCEEECTTSC---CSSCCS-CC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred CccEEECCCCC---CCcCCC-CC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 55555554443 333432 21 24566666666666644 44566666666666666666666543 566666666
Q ss_pred ecCCCCCCcccHhhhcccccceeeecCcc---CC-CCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecc
Q 039831 402 EMPSSHIDQSPEDIWMMQKLMHLNFGSIT---LP-APPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGD 475 (545)
Q Consensus 402 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~---lp-~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 475 (545)
++++|.+..+|..+..+++|++|++++|. +| ..+ ..+++|+.|.+..+ .......+..+++|+.|++++|
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHH----cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 66666666666666666666666666652 22 223 56666666655544 2222333566777777877777
Q ss_pred cCccccchh-HhccCCCCCcEEEeecCCCCCeee-cc-CCCCCCCccEEEEeccCCchh
Q 039831 476 LSYYQSGVS-KSLCELHKLECLKLVNESKPSRMV-LS-EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 476 ~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~L~-lP-~l~~l~~L~~L~L~~~~l~~~ 531 (545)
. ...++ ..+..+++|+.|+|++ +.+. +| .+..+++|+.|+|++|++.++
T Consensus 159 ~---l~~l~~~~~~~l~~L~~L~L~~----N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 N---LTELPAGLLNGLENLDTLLLQE----NSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp C---CSCCCTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred c---CCccCHHHhcCcCCCCEEECCC----CcCCccChhhcccccCCeEEeCCCCccCc
Confidence 6 33344 3456777888888875 3332 26 666677788888888877653
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=2e-16 Score=153.87 Aligned_cols=184 Identities=19% Similarity=0.169 Sum_probs=150.4
Q ss_pred CcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCcccH-hhhcccccceeeec
Q 039831 350 KYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSPE-DIWMMQKLMHLNFG 427 (545)
Q Consensus 350 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~ 427 (545)
...+.++++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 457899999999999998775 689999999999999976 68999999999999999999985 46889999999999
Q ss_pred CccC---CCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchh-HhccCCCCCcEEEeecC
Q 039831 428 SITL---PAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVS-KSLCELHKLECLKLVNE 501 (545)
Q Consensus 428 ~~~l---p~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~ 501 (545)
+|.+ |... +..+++|+.|.+..+ ....+..++.+++|+.|+++++. ...++ ..+..+++|+.|+|++
T Consensus 94 ~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~- 166 (270)
T 2o6q_A 94 DNKLQALPIGV---FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE---LQSLPKGVFDKLTSLKELRLYN- 166 (270)
T ss_dssp SSCCCCCCTTT---TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCcCCcCCHhH---cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc---CCccCHhHccCCcccceeEecC-
Confidence 8844 4322 378899999987766 33344557899999999999987 33444 4588999999999986
Q ss_pred CCCCeeec-c--CCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 502 SKPSRMVL-S--EYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 502 ~~~~~L~l-P--~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
+.+.- | .+..+++|++|+|++|.+...+...+..++.|+.|
T Consensus 167 ---n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 167 ---NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp ---SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ---CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 33332 4 68889999999999999999888777777777653
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=6.2e-17 Score=160.69 Aligned_cols=184 Identities=21% Similarity=0.217 Sum_probs=152.4
Q ss_pred hhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhccccccee
Q 039831 345 FFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHL 424 (545)
Q Consensus 345 ~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 424 (545)
.+..+++|+.|++++|.++.+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+..+++|++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 3456889999999999999887 68999999999999999999987 999999999999999999987 59999999999
Q ss_pred eecCccCCC--CcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCC
Q 039831 425 NFGSITLPA--PPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 502 (545)
Q Consensus 425 ~l~~~~lp~--~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 502 (545)
++++|.+.. .+ ..+++|+.|.+..+.-..+..++.+++|+.|++++|. ...++. +..+++|+.|+|++
T Consensus 113 ~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~-- 182 (308)
T 1h6u_A 113 DLTSTQITDVTPL----AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADD-- 182 (308)
T ss_dssp ECTTSCCCCCGGG----TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCS--
T ss_pred ECCCCCCCCchhh----cCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCC--
Confidence 999985432 35 8889999998877744444458899999999999987 344444 89999999999996
Q ss_pred CCCeeec-cCCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 503 KPSRMVL-SEYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 503 ~~~~L~l-P~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
+.+.- |.+..+++|+.|+|++|.+.+.+. +..++.|+.|
T Consensus 183 --n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 183 --NKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp --SCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred --CccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 33322 346779999999999999998763 6777777653
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.7e-17 Score=181.83 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=142.2
Q ss_pred CcCCCCceeEEEecCCCCCCCCC------------------Ccchhhhc--CCCcccEEEccCCCCC-CCCccccCCCCC
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNP------------------KDCEIFFK--RFKYLRVLNMGSAVLD-QFPPGLENLYLL 375 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~------------------~~~~~~~~--~l~~L~~L~L~~~~l~-~lp~~i~~L~~L 375 (545)
..++ +|+.|.+.++. +.. ++ ..+. ++++|++|+|++|.+. .+|..++++++|
T Consensus 445 ~~L~--~L~~L~Ls~N~---Lsg~~i~~~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 445 QRLT--KLQIIYFANSP---FTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp GGCT--TCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hcCC--CCCEEECcCCc---CCCCcccccccccccccccccCC--hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 4566 99999999988 444 43 4544 9999999999999966 789999999999
Q ss_pred CEEEccCCC-CCc--cChhhhccc-------cCcEEecCCCCCCcccH--hhhcccccceeeecCc---cCCCCcccCcC
Q 039831 376 KYLKLNIPS-LKC--LPSLLCTLL-------NLETLEMPSSHIDQSPE--DIWMMQKLMHLNFGSI---TLPAPPKNYSS 440 (545)
Q Consensus 376 ~~L~l~~~~-i~~--lp~~i~~L~-------~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~---~lp~~~~~~~~ 440 (545)
++|++++|. ++. +|..++++. +|++|++++|.+..+|. .++++++|++|++++| .+| .+ +
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~----~ 592 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AF----G 592 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CC----C
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hh----c
Confidence 999999998 874 898888877 99999999999999998 9999999999999988 455 56 8
Q ss_pred Ccccccccccccc-CCCchhhcCCCCC-CCEEEEecccCccccchhHhccCCCC--CcEEEeec
Q 039831 441 SLKNLIFTSALNP-SSCTLDILFRLPS-VRTLRISGDLSYYQSGVSKSLCELHK--LECLKLVN 500 (545)
Q Consensus 441 ~l~~L~~L~~~~~-~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~l~~--L~~L~L~~ 500 (545)
.+++|+.|.+..+ -...+..+..+++ |+.|++++|. ...+|..+..++. |+.|+|++
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~---L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK---LKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC---CCSCCSCCCTTCSSCEEEEECCS
T ss_pred CCCcceEEECcCCccccchHHHhhccccCCEEECcCCC---CCcCchhhhccccCCCCEEECcC
Confidence 9999999988776 2355667888998 9999999987 3477777777654 99999987
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=172.23 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=111.6
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L 372 (545)
.+..++++.+..+.+.... ..++ +|++|++.++. +..+.+ ..|.++++|++|++++|.++.+| ..++.+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~---i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCE---IQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCS--SCCEEECTTCC---CCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccccEEEccCCccCccChhHhhCCC--CceEEECCCCc---CCccCc-ccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 4567889999998877654 5566 89999998886 555666 77889999999999999988664 678899
Q ss_pred CCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCc--ccHhhhcccccceeeecCccCC----CCcccCcCCcccc
Q 039831 373 YLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQ--SPEDIWMMQKLMHLNFGSITLP----APPKNYSSSLKNL 445 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~lp----~~~~~~~~~l~~L 445 (545)
.+|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++++++|++|++++|.+. ..+ +.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L 175 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL----RVLHQM 175 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG----HHHHTC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc----cchhcc
Confidence 999999999999988876 58899999999999997775 6888999999999999887442 334 566666
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=7.8e-17 Score=173.02 Aligned_cols=144 Identities=21% Similarity=0.239 Sum_probs=115.0
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L 372 (545)
....++.+.+.++.+.... ..++ +|+.|.+.++. +..+++ ..|..+++|++|++++|.++.+|+. ++++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~---i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSR---INTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCT--TCCEEECTTSC---CCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCCCccEEECcCCccCccChhhhhcCC--cccEEECCCCC---cCccCh-hhccccccCCEEECCCCccCccCHHHhccC
Confidence 3467899999998877553 5566 89999998877 556666 7889999999999999999977665 8999
Q ss_pred CCCCEEEccCCCCCcc--ChhhhccccCcEEecCCCC-CCccc-HhhhcccccceeeecCcc----CCCCcccCcCCccc
Q 039831 373 YLLKYLKLNIPSLKCL--PSLLCTLLNLETLEMPSSH-IDQSP-EDIWMMQKLMHLNFGSIT----LPAPPKNYSSSLKN 444 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~l--p~~i~~L~~L~~L~l~~~~-l~~lp-~~~~~L~~L~~L~l~~~~----lp~~~~~~~~~l~~ 444 (545)
++|++|++++|.++.+ |..++++++|++|++++|. +..+| ..++.+++|++|++++|. .|..+ +.+++
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~ 173 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL----KSIRD 173 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----TTCSE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh----hcccc
Confidence 9999999999998854 6678899999999999995 78887 678999999999998773 45555 66666
Q ss_pred ccccccc
Q 039831 445 LIFTSAL 451 (545)
Q Consensus 445 L~~L~~~ 451 (545)
|++|.+.
T Consensus 174 L~~L~l~ 180 (549)
T 2z81_A 174 IHHLTLH 180 (549)
T ss_dssp EEEEEEE
T ss_pred CceEecc
Confidence 6666543
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=2.1e-16 Score=170.21 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=97.9
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLY 373 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~ 373 (545)
.+..++.+.+..+.+...+ ..++ +|+.|.+.++. +..+.+ ..|..+++|++|++++|.++.+|.. .++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~--~L~~L~Ls~N~---l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLS--ELRVLRLSHNR---IRSLDF-HVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCT--TCCEEECCSCC---CCEECT-TTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCCCcCEEECCCCCccccChhhhccCC--CccEEECCCCC---CCcCCH-HHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 4578999999999988765 5566 99999998887 666766 7899999999999999999998887 899
Q ss_pred CCCEEEccCCCCCccC--hhhhccccCcEEecCCCCCCcccHhhhccccc--ceeeecCc
Q 039831 374 LLKYLKLNIPSLKCLP--SLLCTLLNLETLEMPSSHIDQSPEDIWMMQKL--MHLNFGSI 429 (545)
Q Consensus 374 ~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L--~~L~l~~~ 429 (545)
+|++|++++|.++.+| ..++++++|++|++++|.+... .+..+++| ++|++++|
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEES
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecc
Confidence 9999999999998864 7899999999999999876542 23333333 55555443
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=1.1e-16 Score=176.51 Aligned_cols=229 Identities=19% Similarity=0.139 Sum_probs=173.0
Q ss_pred EEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccC
Q 039831 305 CIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNI 382 (545)
Q Consensus 305 l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~ 382 (545)
+...+.....++ .-.+ +++.|.+.++. +..+++ ..|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 9 ~~cs~~~L~~ip~~~~~--~l~~L~Ls~n~---l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLPT--NITVLNLTHNQ---LRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EECCSSCCSSCCSCSCT--TCSEEECCSSC---CCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eECCCCCccccccccCC--CCcEEECCCCC---CCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 334444444455 2335 89999999887 666776 7899999999999999999866 67789999999999999
Q ss_pred CCCCccCh-hhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccC----CCCcccCcCCcccccccccccc--C
Q 039831 383 PSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITL----PAPPKNYSSSLKNLIFTSALNP--S 454 (545)
Q Consensus 383 ~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~l----p~~~~~~~~~l~~L~~L~~~~~--~ 454 (545)
|.++.+|+ .++++++|++|++++|.+..+| ..|+++++|++|++++|.+ |..+ +++++|+.|.+..+ .
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ----VQLENLQELLLSNNKIQ 158 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS----SCCTTCCEEECCSSCCC
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh----cccccCCEEEccCCccc
Confidence 99999987 5899999999999999999887 6799999999999998844 3445 88999999987765 3
Q ss_pred CCchhhcC--CCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC--------------C-CC-Ceeec-------
Q 039831 455 SCTLDILF--RLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE--------------S-KP-SRMVL------- 509 (545)
Q Consensus 455 ~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~--------------~-~~-~~L~l------- 509 (545)
+..+..++ .+++|+.|++++|. .....+..+..+++|+.|++++. . .. +.|.+
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQ--IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCC--CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ccCHHHhhccccccccEEECCCCc--ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 33344443 56899999999886 33334455555555555554421 0 01 22222
Q ss_pred --c-CCCCCC--CccEEEEeccCCchhhhhhhhccccceeC
Q 039831 510 --S-EYQFPP--SLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 510 --P-~l~~l~--~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
| ++..++ +|+.|+|++|.+.+.+...+..++.|++|
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence 5 777664 49999999999999888888888887754
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=180.48 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=110.2
Q ss_pred ccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCC-CCCC-CccccCCCCCCEEEccCCCCC
Q 039831 309 GNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAV-LDQF-PPGLENLYLLKYLKLNIPSLK 386 (545)
Q Consensus 309 ~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L~l~~~~i~ 386 (545)
.+....++...+ +++.|++.++. +..+.+ ..|.++++|++|+|++|. +..+ |..++++++|++|+|++|.+.
T Consensus 13 ~~~L~~vP~lp~--~l~~LdLs~N~---i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 13 FCNLTQVPQVLN--TTERLLLSFNY---IRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp CCCSSCCCSSCT--TCCEEEEESCC---CCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCCCCCCCCC--CcCEEECCCCc---CCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 333444444335 99999999887 566666 789999999999999996 4456 778999999999999999998
Q ss_pred cc-ChhhhccccCcEEecCCCCCCc-ccHh--hhcccccceeeecCccCC-----CCcccCcCCcccccccccccc
Q 039831 387 CL-PSLLCTLLNLETLEMPSSHIDQ-SPED--IWMMQKLMHLNFGSITLP-----APPKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 387 ~l-p~~i~~L~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~lp-----~~~~~~~~~l~~L~~L~~~~~ 453 (545)
.+ |..++++++|++|++++|.+.. +|.. ++++++|++|++++|.+. ..+ +++++|++|++..+
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~----~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF----GKLNSLKSIDFSSN 158 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG----GTCSSCCEEEEESS
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhH----hhCCCCCEEECCCC
Confidence 87 7789999999999999998775 5654 899999999999988432 345 89999999887655
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=5.6e-16 Score=162.28 Aligned_cols=211 Identities=13% Similarity=0.069 Sum_probs=147.9
Q ss_pred CCeeEEEEEccCCCCCC--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 300 ANFKRCIILGNQFDFFP--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
..++.+.+..+.+...+ ..++ +|+.|.+.++. +..+ + +..+++|++|++++|.++.+| ++++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~--~L~~L~Ls~n~---l~~~---~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNN---ITTL---D-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCT--TCSEEECCSSC---CSCC---C-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccChhhcccC--CCCEEEccCCc---CCeE---c-cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 46778888887776655 5566 88888887776 3333 2 677888888888888888765 778888888
Q ss_pred EEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCC--CcccCcCCccccccccccccCC
Q 039831 378 LKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFTSALNPSS 455 (545)
Q Consensus 378 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~--~~~~~~~~l~~L~~L~~~~~~~ 455 (545)
|++++|.++.+| ++.+++|++|++++|.+..+| ++.+++|++|++++|..-. .+ +.+++|+.|++..+.-
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDV----TPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCC----TTCTTCCEEECCSSCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccccc----ccCCcCCEEECCCCcc
Confidence 888888888876 778888888888888877775 7778888888888773221 34 6777778777665532
Q ss_pred CchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeee-ccCCCCCCCccEEEEeccCCchhhhh
Q 039831 456 CTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMV-LSEYQFPPSLIQLSLSNTELMEDLIN 534 (545)
Q Consensus 456 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~-lP~l~~l~~L~~L~L~~~~l~~~~~~ 534 (545)
..++ ++.+++|+.|++++|. ...+ .++.+++|+.|++++ +.+. +| ++.+++|+.|++++|.+.+.++.
T Consensus 183 ~~l~-l~~l~~L~~L~l~~N~---l~~~--~l~~l~~L~~L~Ls~----N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 183 TELD-VSQNKLLNRLNCDTNN---ITKL--DLNQNIQLTFLDCSS----NKLTEID-VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CCCC-CTTCTTCCEEECCSSC---CSCC--CCTTCTTCSEEECCS----SCCSCCC-CTTCTTCSEEECCSSCCSCCCCT
T ss_pred ceec-cccCCCCCEEECcCCc---CCee--ccccCCCCCEEECcC----CcccccC-ccccCCCCEEEeeCCcCCCcCHH
Confidence 2232 6777788888888776 2222 367778888888875 2221 14 55677778888888877776655
Q ss_pred hhhccc
Q 039831 535 SELETQ 540 (545)
Q Consensus 535 ~l~~~~ 540 (545)
.+..++
T Consensus 252 ~l~~L~ 257 (457)
T 3bz5_A 252 TLSKLT 257 (457)
T ss_dssp TCTTCC
T ss_pred HCCCCC
Confidence 444433
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=3.2e-16 Score=164.14 Aligned_cols=198 Identities=18% Similarity=0.068 Sum_probs=159.9
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccc
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLL 396 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~ 396 (545)
..++ +++.|.+.++. +..+ +.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| +++++
T Consensus 39 ~~l~--~L~~L~Ls~n~---l~~~---~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 39 EQLA--TLTSLDCHNSS---ITDM---TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp HHHT--TCCEEECCSSC---CCCC---TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred hHcC--CCCEEEccCCC---cccC---hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCC
Confidence 3456 99999998876 4444 35789999999999999999886 899999999999999999986 89999
Q ss_pred cCcEEecCCCCCCcccHhhhcccccceeeecCccCCC-CcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecc
Q 039831 397 NLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPA-PPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGD 475 (545)
Q Consensus 397 ~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~-~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 475 (545)
+|++|++++|.+..+| ++.+++|++|++++|.+.. .+ +.+++|+.|.+..+.....-.++.+++|+.|++++|
T Consensus 107 ~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l----~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDV----SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCC----TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceecc----ccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 9999999999999987 8999999999999885532 25 888999999877662221125788999999999998
Q ss_pred cCccccchhHhccCCCCCcEEEeecCCCCCeeeccCCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 476 LSYYQSGVSKSLCELHKLECLKLVNESKPSRMVLSEYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 476 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~lP~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
. ...++ +..+++|+.|++++ +.+.-..++.+++|+.|++++|.+.+.| +..++.|+.
T Consensus 181 ~---l~~l~--l~~l~~L~~L~l~~----N~l~~~~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~ 237 (457)
T 3bz5_A 181 K---ITELD--VSQNKLLNRLNCDT----NNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTY 237 (457)
T ss_dssp C---CCCCC--CTTCTTCCEEECCS----SCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCSE
T ss_pred c---cceec--cccCCCCCEEECcC----CcCCeeccccCCCCCEEECcCCcccccC---ccccCCCCE
Confidence 7 44455 88999999999986 3332113677999999999999999976 445555543
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.68 E-value=8.9e-16 Score=161.42 Aligned_cols=198 Identities=19% Similarity=0.172 Sum_probs=95.3
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
+|+.|.+.++. +..+ +.+..+++|+.|++++|.++..++ ++.+++|++|++++|.++.++ .+..+++|++|+
T Consensus 178 ~L~~L~l~~n~---l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 249 (466)
T 1o6v_A 178 TLERLDISSNK---VSDI---SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD 249 (466)
T ss_dssp TCCEEECCSSC---CCCC---GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred CCCEEECcCCc---CCCC---hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEE
Confidence 55555555444 2222 234555555555555555554433 445555555555555555443 345555555555
Q ss_pred cCCCCCCcccHhhhcccccceeeecCccCCC--CcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccc
Q 039831 403 MPSSHIDQSPEDIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQ 480 (545)
Q Consensus 403 l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~--~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 480 (545)
+++|.+..++. +..+++|+.|++++|.+.. .+ ..+++|+.|++..+.-.....++.+++|+.|++++|. ..
T Consensus 250 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~--l~ 322 (466)
T 1o6v_A 250 LANNQISNLAP-LSGLTKLTELKLGANQISNISPL----AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN--IS 322 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGG----TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC--CS
T ss_pred CCCCccccchh-hhcCCCCCEEECCCCccCccccc----cCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc--CC
Confidence 55555555544 5555555555555543221 12 4455555555444422222224455555555555554 11
Q ss_pred cchhHhccCCCCCcEEEeecCCCCCeeec-cCCCCCCCccEEEEeccCCchhhhhhhhccccce
Q 039831 481 SGVSKSLCELHKLECLKLVNESKPSRMVL-SEYQFPPSLIQLSLSNTELMEDLINSELETQVLQ 543 (545)
Q Consensus 481 ~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~ 543 (545)
...+ +..+++|+.|++++ +.+.- |.+..+++|+.|++++|.+.+.++ +..++.|+
T Consensus 323 ~~~~--~~~l~~L~~L~l~~----n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYN----NKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp CCGG--GGGCTTCCEEECCS----SCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred Cchh--hccCccCCEeECCC----CccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 1111 44555555555553 11111 244556666666666666655433 34444443
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2.2e-16 Score=154.04 Aligned_cols=186 Identities=19% Similarity=0.122 Sum_probs=147.6
Q ss_pred CcccEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCccc-Hhhhcccccceeee
Q 039831 350 KYLRVLNMGSAVLDQFPP-GLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNF 426 (545)
Q Consensus 350 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l 426 (545)
+.|++|++++|.++.++. .+.++++|++|++++|.++.+|. .+.++++|++|++++|.+..+| ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 579999999999997755 78999999999999999998876 6899999999999999999887 77999999999999
Q ss_pred cCccC---CC-CcccCcCCccccccccccccC--C-CchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCc----E
Q 039831 427 GSITL---PA-PPKNYSSSLKNLIFTSALNPS--S-CTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE----C 495 (545)
Q Consensus 427 ~~~~l---p~-~~~~~~~~l~~L~~L~~~~~~--~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~----~ 495 (545)
++|.+ +. .+ +.+++|++|++..+. . ..+..++.+++|+.|++++|. .....+..+..+++|+ +
T Consensus 108 ~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 108 VETNLASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp TTSCCCCSTTCCC----TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEE
T ss_pred CCCCccccCchhc----ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhcccccee
Confidence 98743 32 45 889999999877662 2 246778999999999999987 2222234444444555 8
Q ss_pred EEeecCCCCCeeec-c-CCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 496 LKLVNESKPSRMVL-S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 496 L~L~~~~~~~~L~l-P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
|++++ +.+.- | ......+|+.|+|++|.+.+.+...+..++.|+.|
T Consensus 182 L~ls~----n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 182 LDLSL----NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp EECCS----SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred eecCC----CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 99986 33322 4 44445689999999999999888877878877653
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=2e-16 Score=155.69 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=75.4
Q ss_pred hcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceee
Q 039831 346 FKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLN 425 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 425 (545)
+..+++|+.|++++|.++.++. ++.+++|++|++++|.++.+|. +..+++|++|++++|.+..+| .+..+++|++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEE
Confidence 4445555555555555554443 5555555555555555555432 555555555555555555543 345555555555
Q ss_pred ecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCC
Q 039831 426 FGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPS 505 (545)
Q Consensus 426 l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 505 (545)
+++|.+ ..+..++.+++|+.|++++|. ...++. +..+++|+.|+|++ +
T Consensus 141 l~~n~l------------------------~~~~~l~~l~~L~~L~L~~N~---l~~~~~-l~~l~~L~~L~L~~----N 188 (291)
T 1h6t_A 141 LGNNKI------------------------TDITVLSRLTKLDTLSLEDNQ---ISDIVP-LAGLTKLQNLYLSK----N 188 (291)
T ss_dssp CCSSCC------------------------CCCGGGGGCTTCSEEECCSSC---CCCCGG-GTTCTTCCEEECCS----S
T ss_pred ccCCcC------------------------CcchhhccCCCCCEEEccCCc---cccchh-hcCCCccCEEECCC----C
Confidence 554422 222334455555555555554 222222 55555555555553 2
Q ss_pred eeec-cCCCCCCCccEEEEeccCCchhhh
Q 039831 506 RMVL-SEYQFPPSLIQLSLSNTELMEDLI 533 (545)
Q Consensus 506 ~L~l-P~l~~l~~L~~L~L~~~~l~~~~~ 533 (545)
.+.- |.+..+++|+.|++++|++...+.
T Consensus 189 ~i~~l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 189 HISDLRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCBCGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred cCCCChhhccCCCCCEEECcCCcccCCcc
Confidence 2211 334455555555555555555443
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=6.1e-16 Score=152.09 Aligned_cols=189 Identities=19% Similarity=0.138 Sum_probs=157.8
Q ss_pred CCeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEE
Q 039831 300 ANFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYL 378 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 378 (545)
..++.+....+....++ .-.+ +++.|.+.++. +..+.+ ..|..+++|+.|++++|.++.+|.. +.+++|++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~~--~l~~L~L~~N~---l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLPK--DTTILHLSENL---LYTFSL-ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCCT--TCCEEECTTSC---CSEEEG-GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred CCccEEECCCCCCCcCCCCCCC--CCCEEEcCCCc---CCccCH-HHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 45677888777777776 4446 89999998887 566666 7899999999999999999987655 789999999
Q ss_pred EccCCCCCccChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCcc---CCCCcccCcCCcccccccccccc-
Q 039831 379 KLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSIT---LPAPPKNYSSSLKNLIFTSALNP- 453 (545)
Q Consensus 379 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~---lp~~~~~~~~~l~~L~~L~~~~~- 453 (545)
++++|.++.+|..+..+++|++|++++|.++.+| ..|..+++|++|++++|. +|.+. +..+++|+.|.+..+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL---LTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECTTSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh---cccccCCCEEECCCCc
Confidence 9999999999999999999999999999999998 679999999999999884 44432 378899999987766
Q ss_pred -CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC
Q 039831 454 -SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 501 (545)
Q Consensus 454 -~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 501 (545)
.......+..+++|+.|++++|. ...+|..+..+.+|+.|+|+++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~---l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENS---LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCCCSEEECCSC
T ss_pred CCccCHHHhcCcCCCCEEECCCCc---CCccChhhcccccCCeEEeCCC
Confidence 32233346789999999999987 5678888888899999999974
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=6.4e-16 Score=150.48 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=145.0
Q ss_pred hhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCccc-Hhhhcccccc
Q 039831 344 IFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLM 422 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~ 422 (545)
.....+++|+.|++++|.++.++ .++.+++|++|++++|.+..++ .++++++|++|++++|.+..+| ..++.+++|+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34567889999999999998765 5889999999999999998875 7899999999999999999987 4579999999
Q ss_pred eeeecCccCCCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeec
Q 039831 423 HLNFGSITLPAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 423 ~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
+|++++|.+..-....++.+++|+.|.+..+ ....+..++.+++|+.|++++|. .....+..++.+++|+.|+|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--cCccCHHHhcCCccCCEEECCC
Confidence 9999988442211111288999999988776 33334447889999999999997 3333445678999999999996
Q ss_pred CCCCCeeec--c-CCCCCCCccEEEEeccCCchhh
Q 039831 501 ESKPSRMVL--S-EYQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 501 ~~~~~~L~l--P-~l~~l~~L~~L~L~~~~l~~~~ 532 (545)
+.+.- | .+..+++|+.|+|++|.+.+..
T Consensus 191 ----N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 191 ----NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp ----SCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ----CcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 33332 4 6888999999999999998754
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=5.9e-17 Score=161.14 Aligned_cols=195 Identities=15% Similarity=0.059 Sum_probs=106.7
Q ss_pred ceeEEEecCCCCCCCCCCcchhhh--cCCCcccEEEccCCCCCCCCccccCC-----CCCCEEEccCCCCCccC-hhhhc
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFF--KRFKYLRVLNMGSAVLDQFPPGLENL-----YLLKYLKLNIPSLKCLP-SLLCT 394 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~l~~~~i~~lp-~~i~~ 394 (545)
+|+.|.+.++. +....+ ..+ ..+++|++|++++|.++..|..++.+ ++|++|++++|.+..+| ..+++
T Consensus 96 ~L~~L~L~~n~---l~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 96 GLQELTLENLE---VTGTAP-PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CCCEEEEEEEB---CBSCCC-CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CccEEEccCCc---ccchhH-HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 66666666655 222222 222 56666666666666666556555555 66666666666666655 45666
Q ss_pred cccCcEEecCCCCCCc---ccHhh--hcccccceeeecCccCCC--Cc-ccCcCCcccccccccccc--CCCc-hhhcCC
Q 039831 395 LLNLETLEMPSSHIDQ---SPEDI--WMMQKLMHLNFGSITLPA--PP-KNYSSSLKNLIFTSALNP--SSCT-LDILFR 463 (545)
Q Consensus 395 L~~L~~L~l~~~~l~~---lp~~~--~~L~~L~~L~l~~~~lp~--~~-~~~~~~l~~L~~L~~~~~--~~~~-~~~l~~ 463 (545)
+++|++|++++|.+.. +|..+ +.+++|++|++++|.+.. .+ ..++..+++|+.|++..+ .+.. ...+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 6666666666665332 23334 566666666666664431 11 001134455666555444 1111 133445
Q ss_pred CCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec-cCCCCCCCccEEEEeccCCch
Q 039831 464 LPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-SEYQFPPSLIQLSLSNTELME 530 (545)
Q Consensus 464 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P~l~~l~~L~~L~L~~~~l~~ 530 (545)
+++|+.|++++|. ...+|..+. ++|+.|+|++ +.+.- |.+..+++|++|+|++|++++
T Consensus 252 l~~L~~L~Ls~N~---l~~ip~~~~--~~L~~L~Ls~----N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTG---LKQVPKGLP--AKLSVLDLSY----NRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSC---CSSCCSSCC--SEEEEEECCS----SCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCc---cChhhhhcc--CCceEEECCC----CCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 6667777776665 335555444 5677777765 33322 445556777777777776654
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=169.07 Aligned_cols=214 Identities=18% Similarity=0.186 Sum_probs=157.3
Q ss_pred CeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC---CccccCCCCCC
Q 039831 301 NFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF---PPGLENLYLLK 376 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~ 376 (545)
.++++.+..+....++ ..++ +++.|.+.++.. ....+ ...+++|+.|++++|.++.. |..+..+++|+
T Consensus 305 ~L~~L~l~~n~~~~l~~~~l~--~L~~L~l~~n~~---~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPTLKLK--SLKRLTFTSNKG---GNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CCSEEEEESCBCSSCCBCBCS--SCCEEEEESCBS---CCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred CccEEeeccCcccccCccccc--ccCEEeCcCCcc---ccccc---cccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 6677777777766555 5566 788888777663 22222 26778888888888887744 56777888888
Q ss_pred EEEccCCCCCccChhhhccccCcEEecCCCCCCccc--HhhhcccccceeeecCcc----CCCCcccCcCCccccccccc
Q 039831 377 YLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP--EDIWMMQKLMHLNFGSIT----LPAPPKNYSSSLKNLIFTSA 450 (545)
Q Consensus 377 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~----lp~~~~~~~~~l~~L~~L~~ 450 (545)
+|++++|.+..+|..+..+++|++|++++|.+...+ ..+..+++|++|++++|. .|..+ +.+++|+.|.+
T Consensus 377 ~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l 452 (570)
T 2z63_A 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKM 452 (570)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT----TTCTTCCEEEC
T ss_pred EEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh----hcCCcCcEEEC
Confidence 888888888888777888888888888888766653 467888888888888773 34455 77888888877
Q ss_pred cccC---CCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--c-CCCCCCCccEEEEe
Q 039831 451 LNPS---SCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL--S-EYQFPPSLIQLSLS 524 (545)
Q Consensus 451 ~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l--P-~l~~l~~L~~L~L~ 524 (545)
..+. +..+..++.+++|+.|++++|. .....|..+..+++|+.|+|++ +.+.- | .+..+++|+.|+++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLNMAS----NQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS----SCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCc--cccCChhhhhcccCCCEEeCCC----CcCCCCCHHHhhcccCCcEEEec
Confidence 6662 3455667888888888888886 4444467788888888888885 33322 4 67788889999999
Q ss_pred ccCCchhh
Q 039831 525 NTELMEDL 532 (545)
Q Consensus 525 ~~~l~~~~ 532 (545)
+|++.+..
T Consensus 527 ~N~~~~~~ 534 (570)
T 2z63_A 527 TNPWDCSC 534 (570)
T ss_dssp SSCBCCCT
T ss_pred CCcccCCC
Confidence 98888754
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=1.4e-15 Score=163.26 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=159.3
Q ss_pred ccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccCCCCC
Q 039831 309 GNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNIPSLK 386 (545)
Q Consensus 309 ~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~i~ 386 (545)
.+....++ .-.+ ++++|.+.++. +..+.+ ..|..+++|++|++++|.++.+ |..++++++|++|++++|.+.
T Consensus 14 ~~~l~~ip~~~~~--~L~~L~Ls~n~---l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 14 SRSFTSIPSGLTA--AMKSLDLSFNK---ITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp TSCCSSCCSCCCT--TCCEEECCSSC---CCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCccccccccCCC--CccEEECcCCc---cCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 33444444 3345 89999999887 555666 7889999999999999999966 467999999999999999999
Q ss_pred ccChh-hhccccCcEEecCCCCCCcc--cHhhhcccccceeeecCcc----CC-CCcccCcCCcccccccccccc--CCC
Q 039831 387 CLPSL-LCTLLNLETLEMPSSHIDQS--PEDIWMMQKLMHLNFGSIT----LP-APPKNYSSSLKNLIFTSALNP--SSC 456 (545)
Q Consensus 387 ~lp~~-i~~L~~L~~L~l~~~~l~~l--p~~~~~L~~L~~L~l~~~~----lp-~~~~~~~~~l~~L~~L~~~~~--~~~ 456 (545)
.+|+. ++++++|++|++++|.+..+ |..++.+++|++|++++|. +| ..+ +.+++|+.|++..+ .+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF----AGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT----TTCCEEEEEEEEETTCCEE
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh----hcccccCeeeccCCccccc
Confidence 99876 89999999999999988854 6789999999999998874 33 356 88999999987766 444
Q ss_pred chhhcCCCCCCCEEEEecccCccccchhHh-ccCCCCCcEEEeecCCCCCeeec-c-C-CCCCCCccEEEEeccCCchh
Q 039831 457 TLDILFRLPSVRTLRISGDLSYYQSGVSKS-LCELHKLECLKLVNESKPSRMVL-S-E-YQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 457 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~L~l-P-~-l~~l~~L~~L~L~~~~l~~~ 531 (545)
.+..++.+++|+.|++.++. ...++.. +..+++|+.|+++++.. ..+.. | + ...+++|+.|++++|.+.+.
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSE---SAFLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSB---STTHHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ChhhhhccccCceEecccCc---ccccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcccceeccccccchh
Confidence 67778899999999999886 3444543 45789999999996200 11111 2 2 23366777777777766654
No 73
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=4.8e-16 Score=167.75 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=81.8
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
+|+.|.+.++. +..+ +.+..+++|+.|+|++|.++.+|+ ++.+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 44 ~L~~L~l~~n~---i~~l---~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 44 SIDQIIANNSD---IKSV---QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp TCCCCBCTTCC---CCCC---TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCEEECcCCC---CCCC---hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 55555554444 2222 235556666666666666665544 556666666666666665554 455666666666
Q ss_pred cCCCCCCcccHhhhcccccceeeecCccCC--CCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccc
Q 039831 403 MPSSHIDQSPEDIWMMQKLMHLNFGSITLP--APPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQ 480 (545)
Q Consensus 403 l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp--~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 480 (545)
|++|.+..+|. +..+++|+.|++++|.+. ..+ +.+++|+.|++..+.-..+..+..+++|+.|++++|. .
T Consensus 116 Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---i 187 (605)
T 1m9s_A 116 LEHNGISDING-LVHLPQLESLYLGNNKITDITVL----SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH---I 187 (605)
T ss_dssp CTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG----GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC---C
T ss_pred ecCCCCCCCcc-ccCCCccCEEECCCCccCCchhh----cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC---C
Confidence 66665555542 556666666666655332 122 4444555554443321111124455555555555543 1
Q ss_pred cchhHhccCCCCCcEEEeec
Q 039831 481 SGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 481 ~~~~~~l~~l~~L~~L~L~~ 500 (545)
..++ .+..+++|+.|+|++
T Consensus 188 ~~l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 188 SDLR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp CBCG-GGTTCTTCSEEECCS
T ss_pred CCCh-HHccCCCCCEEEccC
Confidence 2222 344455555555543
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=3e-15 Score=163.12 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=94.5
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCc-cccCC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPP-GLENL 372 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L 372 (545)
.+..+++|.+..|.+..++ ..++ +|+.|++.++. +..+++ ..|.++++|++|+|++|.++.+|. .++++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~--~L~~L~Ls~N~---i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCE---IQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTCC---CCEECT-TTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCC--CCCEEECCCCc---CCCcCh-hHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 4567888888888877665 4455 88888887776 556666 678888888888888888887764 46788
Q ss_pred CCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCc--ccHhhhcccccceeeecC
Q 039831 373 YLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQ--SPEDIWMMQKLMHLNFGS 428 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~ 428 (545)
.+|++|++++|.++.+|+ .++++++|++|++++|.+.. +|..++.+++|++|++++
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 888888888888887765 37788888888888886654 456777777887777763
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=4.5e-15 Score=142.61 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=86.2
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCc
Q 039831 352 LRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 352 L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~ 429 (545)
.+.++++++.++.+|..+. .++++|++++|.+..+++ .+.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4444444444444444433 344445554444444432 3444444555555444444443 23444444555544444
Q ss_pred cCCCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchh-HhccCCCCCcEEEeecCCCCCe
Q 039831 430 TLPAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVS-KSLCELHKLECLKLVNESKPSR 506 (545)
Q Consensus 430 ~lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~ 506 (545)
.+..-....++.+++|+.|.+..+ .......+..+++|+.|++++|. ...++ ..+..+++|+.|+|++ +.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~----N~ 166 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ---LQSIPAGAFDKLTNLQTLSLST----NQ 166 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCS----SC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc---CCccCHHHcCcCcCCCEEECCC----Cc
Confidence 221100001144444444444333 11122235567777777777775 23333 3577777788888775 33
Q ss_pred eec--c-CCCCCCCccEEEEeccCCchh
Q 039831 507 MVL--S-EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 507 L~l--P-~l~~l~~L~~L~L~~~~l~~~ 531 (545)
+.- | .+..+++|+.|+|++|++.+.
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 322 3 567777888888888877765
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=5.1e-15 Score=160.03 Aligned_cols=211 Identities=19% Similarity=0.135 Sum_probs=115.3
Q ss_pred CCCCeeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 298 PPANFKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
.+.+++.|.+.++.+..++..++ +|+.|.+.++. +..++ . .+++|++|++++|.++.+|. .+.+|++
T Consensus 59 l~~~L~~L~L~~N~l~~lp~~l~--~L~~L~Ls~N~---l~~lp--~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~ 125 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPALPP--ELRTLEVSGNQ---LTSLP--V---LPPGLLELSIFSNPLTHLPA---LPSGLCK 125 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCCCCT--TCCEEEECSCC---CSCCC--C---CCTTCCEEEECSCCCCCCCC---CCTTCCE
T ss_pred hCCCCcEEEecCCCCCCCCCcCC--CCCEEEcCCCc---CCcCC--C---CCCCCCEEECcCCcCCCCCC---CCCCcCE
Confidence 34677788888877776665556 78888777766 33332 2 56677777777777776665 4455666
Q ss_pred EEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhh---c--------------ccccceeeecCccCCCCcccCcC
Q 039831 378 LKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIW---M--------------MQKLMHLNFGSITLPAPPKNYSS 440 (545)
Q Consensus 378 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~---~--------------L~~L~~L~l~~~~lp~~~~~~~~ 440 (545)
|++++|.++.+|.. +++|++|++++|.+..+|..+. . +++|+.|++++|.+.. +. .
T Consensus 126 L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~---~ 198 (622)
T 3g06_A 126 LWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LP---T 198 (622)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---C
T ss_pred EECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CC---C
Confidence 66666666666543 2556666666665555443221 1 2556666666553321 10 1
Q ss_pred CccccccccccccCC-----------------Cchhhc-CCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCC
Q 039831 441 SLKNLIFTSALNPSS-----------------CTLDIL-FRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 502 (545)
Q Consensus 441 ~l~~L~~L~~~~~~~-----------------~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 502 (545)
.+++|+.|.+.++.- +.+..+ ..+++|+.|++++|. ...+|. .+++|+.|+|++
T Consensus 199 ~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~---L~~lp~---~~~~L~~L~Ls~-- 270 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR---LTSLPM---LPSGLLSLSVYR-- 270 (622)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCS--
T ss_pred ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCC---CCcCCc---ccccCcEEeCCC--
Confidence 122333332222210 011111 233444555555443 223332 344555555553
Q ss_pred CCCee-ecc-CCCCCCCccEEEEeccCCchhhhhhhhc
Q 039831 503 KPSRM-VLS-EYQFPPSLIQLSLSNTELMEDLINSELE 538 (545)
Q Consensus 503 ~~~~L-~lP-~l~~l~~L~~L~L~~~~l~~~~~~~l~~ 538 (545)
+.+ .+| .+.++++|+.|+|++|++.+.++..+..
T Consensus 271 --N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 271 --NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp --SCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred --CCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 222 127 7888899999999999998877766543
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=2.3e-16 Score=156.92 Aligned_cols=186 Identities=17% Similarity=0.113 Sum_probs=145.4
Q ss_pred CCCcccEEEccCCCCC-CCCccc--cCCCCCCEEEccCCCCCccChhhhcc-----ccCcEEecCCCCCCccc-Hhhhcc
Q 039831 348 RFKYLRVLNMGSAVLD-QFPPGL--ENLYLLKYLKLNIPSLKCLPSLLCTL-----LNLETLEMPSSHIDQSP-EDIWMM 418 (545)
Q Consensus 348 ~l~~L~~L~L~~~~l~-~lp~~i--~~L~~L~~L~l~~~~i~~lp~~i~~L-----~~L~~L~l~~~~l~~lp-~~~~~L 418 (545)
.+++|++|++++|.++ .+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|.+..+| ..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6899999999999998 678876 89999999999999999888888887 89999999999998887 789999
Q ss_pred cccceeeecCccCC------CCcccCcCCccccccccccccCCCc----hhh-cCCCCCCCEEEEecccCccccchh-Hh
Q 039831 419 QKLMHLNFGSITLP------APPKNYSSSLKNLIFTSALNPSSCT----LDI-LFRLPSVRTLRISGDLSYYQSGVS-KS 486 (545)
Q Consensus 419 ~~L~~L~l~~~~lp------~~~~~~~~~l~~L~~L~~~~~~~~~----~~~-l~~l~~L~~L~l~~~~~~~~~~~~-~~ 486 (545)
++|++|++++|.+. ..+ .++.+++|++|++..+.-.. +.. +..+++|+.|++++|. .....+ ..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~ 248 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISAL--CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPS 248 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHS--CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCSC
T ss_pred CCCCEEECCCCCcCcchHHHHHH--HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchhh
Confidence 99999999988642 111 12678888888877663221 212 3578899999999987 222222 45
Q ss_pred ccCCCCCcEEEeecCCCCCee-ecc-CCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 487 LCELHKLECLKLVNESKPSRM-VLS-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 487 l~~l~~L~~L~L~~~~~~~~L-~lP-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
+..+++|+.|+|++ +.+ .+| ++. ++|++|+|++|++++.|. +..++.|++|
T Consensus 249 ~~~l~~L~~L~Ls~----N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L 301 (312)
T 1wwl_A 249 CDWPSQLNSLNLSF----TGLKQVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNL 301 (312)
T ss_dssp CCCCTTCCEEECTT----SCCSSCCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEE
T ss_pred hhhcCCCCEEECCC----CccChhhhhcc--CCceEEECCCCCCCCChh--HhhCCCCCEE
Confidence 66789999999996 333 237 665 899999999999998743 7777777653
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=5.4e-16 Score=147.89 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=93.6
Q ss_pred cccEEEccCCCCCCCCc-cccCCCCCCEEEccCCC-CCccCh-hhhccccCcEEecCC-CCCCccc-Hhhhcccccceee
Q 039831 351 YLRVLNMGSAVLDQFPP-GLENLYLLKYLKLNIPS-LKCLPS-LLCTLLNLETLEMPS-SHIDQSP-EDIWMMQKLMHLN 425 (545)
Q Consensus 351 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~-i~~lp~-~i~~L~~L~~L~l~~-~~l~~lp-~~~~~L~~L~~L~ 425 (545)
.|+.|++++|.++.+|. .++++++|++|++++|. ++.+|+ .+.++++|++|++++ |.++.+| ..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554433 44555555555555554 555543 345555555555555 4555554 3445555555555
Q ss_pred ecCc---cCCCCcccCcCCccccc---ccccccc-C--CCchhhcCCCCCCC-EEEEecccCccccchhHhccCCCCCcE
Q 039831 426 FGSI---TLPAPPKNYSSSLKNLI---FTSALNP-S--SCTLDILFRLPSVR-TLRISGDLSYYQSGVSKSLCELHKLEC 495 (545)
Q Consensus 426 l~~~---~lp~~~~~~~~~l~~L~---~L~~~~~-~--~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~l~~l~~L~~ 495 (545)
+++| .+|. + +.+++|+ .|++..+ . ......+..+++|+ .|+++++. ...++......++|+.
T Consensus 112 l~~n~l~~lp~-~----~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~---l~~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 112 IFNTGLKMFPD-L----TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG---FTSVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEECCCSCCC-C----TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC---CCEECTTTTTTCEEEE
T ss_pred CCCCCCccccc-c----ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC---CcccCHhhcCCCCCCE
Confidence 5544 2232 3 4444444 4433332 1 11122355666677 77776665 2234433222267777
Q ss_pred EEeecCCCCC-eee-cc--CCCCC-CCccEEEEeccCCchhhhhhhhccccce
Q 039831 496 LKLVNESKPS-RMV-LS--EYQFP-PSLIQLSLSNTELMEDLINSELETQVLQ 543 (545)
Q Consensus 496 L~L~~~~~~~-~L~-lP--~l~~l-~~L~~L~L~~~~l~~~~~~~l~~~~~l~ 543 (545)
|+|++ + .+. +| .+..+ ++|+.|++++|++...|...+..++.|.
T Consensus 184 L~L~~----n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~ 232 (239)
T 2xwt_C 184 VYLNK----NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232 (239)
T ss_dssp EECTT----CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred EEcCC----CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceee
Confidence 77764 2 132 23 56666 7777777777777766655555555443
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=7.6e-16 Score=153.44 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=158.3
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccc
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLL 396 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~ 396 (545)
..++ +++.|.+.++. +..+.+ ..|..+++|++|++++|.++..++ ++.+++|++|++++|.++.+|. .+
T Consensus 31 ~~~~--~L~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~ 99 (317)
T 3o53_A 31 QSAW--NVKELDLSGNP---LSQISA-ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GP 99 (317)
T ss_dssp TTGG--GCSEEECTTSC---CCCCCH-HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CT
T ss_pred ccCC--CCCEEECcCCc---cCcCCH-HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CC
Confidence 4456 89999999887 666776 789999999999999999986655 8899999999999999887763 47
Q ss_pred cCcEEecCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCcccccccccccc--CCCchhhc-CCCCCCCEEEEe
Q 039831 397 NLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNP--SSCTLDIL-FRLPSVRTLRIS 473 (545)
Q Consensus 397 ~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l-~~l~~L~~L~l~ 473 (545)
+|++|++++|.+..+|. ..+++|++|++++|.+..-....++.+++|+.|++..+ ....+..+ ..+++|+.|+++
T Consensus 100 ~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 99999999999988874 34788999999988553221112278889999987766 33344455 478999999999
Q ss_pred cccCccccchhHhccCCCCCcEEEeecCCCCCeeec-c-CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 474 GDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 474 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
+|. ...++ ....+++|+.|+|++ +.+.- | .+..+++|+.|+|++|.+...|. .+..++.|+.
T Consensus 178 ~N~---l~~~~-~~~~l~~L~~L~Ls~----N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~ 241 (317)
T 3o53_A 178 YNF---IYDVK-GQVVFAKLKTLDLSS----NKLAFMGPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEH 241 (317)
T ss_dssp TSC---CCEEE-CCCCCTTCCEEECCS----SCCCEECGGGGGGTTCSEEECTTSCCCEECT-TCCCCTTCCE
T ss_pred CCc---Ccccc-cccccccCCEEECCC----CcCCcchhhhcccCcccEEECcCCcccchhh-HhhcCCCCCE
Confidence 987 33333 334589999999996 33322 6 77889999999999999997653 3566666654
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.2e-15 Score=161.24 Aligned_cols=206 Identities=17% Similarity=0.130 Sum_probs=161.1
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccc
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLL 396 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~ 396 (545)
..++ +|+.|.+.++. +..+++ ..|..+++|++|+|++|.++..++ ++.+++|++|++++|.++.+|.. +
T Consensus 31 ~~~~--~L~~L~Ls~n~---l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~ 99 (487)
T 3oja_A 31 QSAW--NVKELDLSGNP---LSQISA-ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----P 99 (487)
T ss_dssp TTGG--GCCEEECCSSC---CCCCCG-GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----T
T ss_pred ccCC--CccEEEeeCCc---CCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----C
Confidence 3445 89999999887 666776 889999999999999999986655 89999999999999999887743 7
Q ss_pred cCcEEecCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCcccccccccccc--CCCchhhcC-CCCCCCEEEEe
Q 039831 397 NLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNP--SSCTLDILF-RLPSVRTLRIS 473 (545)
Q Consensus 397 ~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~-~l~~L~~L~l~ 473 (545)
+|++|++++|.+..+|. ..+++|+.|++++|.+.......++.+++|+.|++..+ .+..+..+. .+++|+.|+++
T Consensus 100 ~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp TCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 99999999999998875 35789999999988543221112288999999988776 344566665 79999999999
Q ss_pred cccCccccchhHhccCCCCCcEEEeecCCCCCeeec-c-CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 474 GDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-S-EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 474 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
+|. ...++ .+..+++|+.|+|++ +.+.- | .+..+++|+.|+|++|.+.+.|.. +..++.|+.
T Consensus 178 ~N~---l~~~~-~~~~l~~L~~L~Ls~----N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~ 241 (487)
T 3oja_A 178 YNF---IYDVK-GQVVFAKLKTLDLSS----NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEH 241 (487)
T ss_dssp TSC---CCEEE-CCCCCTTCCEEECCS----SCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCE
T ss_pred CCc---ccccc-ccccCCCCCEEECCC----CCCCCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCE
Confidence 997 33333 344689999999996 44432 6 788899999999999999986543 555555554
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=150.66 Aligned_cols=195 Identities=12% Similarity=-0.007 Sum_probs=107.2
Q ss_pred ceeEEEecCCCCCCCCCCcchhhh--cCCCcccEEEccCCCCCCC-C----ccccCCCCCCEEEccCCCCCccC-hhhhc
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFF--KRFKYLRVLNMGSAVLDQF-P----PGLENLYLLKYLKLNIPSLKCLP-SLLCT 394 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~l-p----~~i~~L~~L~~L~l~~~~i~~lp-~~i~~ 394 (545)
+++.|.+.++. +....+ ..+ ..+++|++|++++|.++.. | ..+..+++|++|++++|.+..+| ..++.
T Consensus 92 ~L~~L~l~~n~---l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 92 RLKELTLEDLK---ITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp CCCEEEEESCC---CBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ceeEEEeeCCE---eccchh-hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 56666665555 232333 333 5566666666666666532 2 22345666666666666665554 34556
Q ss_pred cccCcEEecCCCCCCc---cc--HhhhcccccceeeecCccCC---CCcccCcCCcccccccccccc--CCCchhhcCCC
Q 039831 395 LLNLETLEMPSSHIDQ---SP--EDIWMMQKLMHLNFGSITLP---APPKNYSSSLKNLIFTSALNP--SSCTLDILFRL 464 (545)
Q Consensus 395 L~~L~~L~l~~~~l~~---lp--~~~~~L~~L~~L~l~~~~lp---~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l 464 (545)
+++|++|++++|.+.. +| ..++.+++|++|++++|.+. .....+++.+++|++|++..+ .+..+..++.+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 6666666666665432 32 12245666666666666442 110000144456666655444 22223334443
Q ss_pred ---CCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec-cCCCCCCCccEEEEeccCCch
Q 039831 465 ---PSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-SEYQFPPSLIQLSLSNTELME 530 (545)
Q Consensus 465 ---~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-P~l~~l~~L~~L~L~~~~l~~ 530 (545)
++|++|++++|. ...+|..+. ++|+.|+|++ +.+.- |.+..+++|+.|+|++|+++.
T Consensus 248 ~~~~~L~~L~Ls~N~---l~~lp~~~~--~~L~~L~Ls~----N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAG---LEQVPKGLP--AKLRVLDLSS----NRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSC---CCSCCSCCC--SCCSCEECCS----CCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCC---CCchhhhhc--CCCCEEECCC----CcCCCCchhhhCCCccEEECcCCCCCC
Confidence 577778877776 335555553 6788888875 33332 444567788888888887764
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=8.6e-16 Score=157.45 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=150.2
Q ss_pred CCCeeEEEEEccCCCCCC--------CcCCCCceeEEEecCCCCCCCCCCcchhh-------hcCCCcccEEEccCCCCC
Q 039831 299 PANFKRCIILGNQFDFFP--------LEYSYMYLQSFLNHSSKSNHLNPKDCEIF-------FKRFKYLRVLNMGSAVLD 363 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~--------~~~~~~~lr~L~~~~~~~~~~~~~~~~~~-------~~~l~~L~~L~L~~~~l~ 363 (545)
...++.+.+.++.+.... ..++ +|+.|.+.++..+.+....+ .. +..+++|++|+|++|.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~~~~~~l~~~~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEFSDIFTGRVKDEIP-EALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCT--TCCEEECCSCCTTSCGGGSH-HHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCC--CccEEeCcccccCccccchh-HHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 345778888877665421 3456 88888887765432322222 22 367888888888888877
Q ss_pred C-----CCccccCCCCCCEEEccCCCCCc-----cChhhhcc---------ccCcEEecCCCCCC--ccc---Hhhhccc
Q 039831 364 Q-----FPPGLENLYLLKYLKLNIPSLKC-----LPSLLCTL---------LNLETLEMPSSHID--QSP---EDIWMMQ 419 (545)
Q Consensus 364 ~-----lp~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L---------~~L~~L~l~~~~l~--~lp---~~~~~L~ 419 (545)
. +|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.+. .+| ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 56677888888888888888753 33334444 78888888888775 445 4677888
Q ss_pred ccceeeecCccCC---------CCcccCcCCccccccccccccC------CCchhhcCCCCCCCEEEEecccCc--cccc
Q 039831 420 KLMHLNFGSITLP---------APPKNYSSSLKNLIFTSALNPS------SCTLDILFRLPSVRTLRISGDLSY--YQSG 482 (545)
Q Consensus 420 ~L~~L~l~~~~lp---------~~~~~~~~~l~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~--~~~~ 482 (545)
+|++|++++|.+. ..+ ..+++|+.|++..+. ...+..+..+++|+.|++++|... ....
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l----~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGL----AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTG----GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHh----hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 8888888877553 144 677788888766552 223455777888888888888611 1123
Q ss_pred hhHhcc--CCCCCcEEEeecCCCCCeee------cc-CC-CCCCCccEEEEeccCCchhh
Q 039831 483 VSKSLC--ELHKLECLKLVNESKPSRMV------LS-EY-QFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 483 ~~~~l~--~l~~L~~L~L~~~~~~~~L~------lP-~l-~~l~~L~~L~L~~~~l~~~~ 532 (545)
++..+. .+++|+.|+|++ +.+. +| ++ .++++|++|+|++|.+.+..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~----n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQY----NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCS----SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcC----CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 566663 378888888885 2221 25 55 55788888888888888765
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=2.9e-14 Score=154.11 Aligned_cols=210 Identities=18% Similarity=0.117 Sum_probs=141.3
Q ss_pred CeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEE
Q 039831 301 NFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLK 379 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 379 (545)
.++.+.+.++.+..++ ...+ +++.|.+.++. +..++ . .+++|++|+|++|.++.+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~--~L~~L~L~~N~---l~~lp--~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNN---LTSLP--A---LPPELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCT--TCSEEEECSCC---CSCCC--C---CCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcCccChhhCC--CCcEEEecCCC---CCCCC--C---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 4688899988888777 3346 99999999887 44443 2 57899999999999999987 789999999
Q ss_pred ccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccC---CCCcccCcCCc--------------
Q 039831 380 LNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITL---PAPPKNYSSSL-------------- 442 (545)
Q Consensus 380 l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~l---p~~~~~~~~~l-------------- 442 (545)
+++|.++.+|. .+.+|++|++++|.+..+|.. +++|++|++++|.+ |..+ .++
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~----~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP----SELCKLWAYNNQLTSLP 177 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSCCC
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCcc----CCCCEEECCCCCCCCCc
Confidence 99999999987 678999999999999999974 48999999998843 3333 333
Q ss_pred ---cccccccccccCCCchhhcC-CCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC-------CCC--Ceeec
Q 039831 443 ---KNLIFTSALNPSSCTLDILF-RLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE-------SKP--SRMVL 509 (545)
Q Consensus 443 ---~~L~~L~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~-------~~~--~~L~l 509 (545)
++|+.|++.++ .+..+. .+++|+.|++.+|. ...+|. .+++|+.|+|+++ .++ +.|.+
T Consensus 178 ~~~~~L~~L~Ls~N---~l~~l~~~~~~L~~L~L~~N~---l~~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~L 248 (622)
T 3g06_A 178 MLPSGLQELSVSDN---QLASLPTLPSELYKLWAYNNR---LTSLPA---LPSGLKELIVSGNRLTSLPVLPSELKELMV 248 (622)
T ss_dssp CCCTTCCEEECCSS---CCSCCCCCCTTCCEEECCSSC---CSSCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred ccCCCCcEEECCCC---CCCCCCCccchhhEEECcCCc---ccccCC---CCCCCCEEEccCCccCcCCCCCCcCcEEEC
Confidence 33333333322 111111 22344444444443 122221 1245555555542 001 33333
Q ss_pred --------cCCCCCCCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 510 --------SEYQFPPSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 510 --------P~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
|. .+++|+.|+|++|.+...| ..+..++.|+.|
T Consensus 249 s~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L 289 (622)
T 3g06_A 249 SGNRLTSLPM--LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTV 289 (622)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEE
T ss_pred CCCCCCcCCc--ccccCcEEeCCCCCCCcCC-HHHhhccccCEE
Confidence 22 4678999999999998664 457777777653
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=3.2e-15 Score=142.51 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=141.5
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCC-CCCCCc-cccCCCCCCEEEccC-CCCCccCh-hhhccccC
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAV-LDQFPP-GLENLYLLKYLKLNI-PSLKCLPS-LLCTLLNL 398 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~l~~-~~i~~lp~-~i~~L~~L 398 (545)
+++.|.+.++. +..+++ ..|..+++|++|++++|. ++.+|. .+.++++|++|++++ |.++.+|. .+.++++|
T Consensus 32 ~l~~L~l~~n~---l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETH---LRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESCC---CSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCCc---ceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 78889888877 556665 678889999999999997 887754 688899999999998 88988875 57889999
Q ss_pred cEEecCCCCCCcccHhhhcccccc---eeeecCc-cC---CC-CcccCcCCccccc-cccccccC-CCchhhcCCCCCCC
Q 039831 399 ETLEMPSSHIDQSPEDIWMMQKLM---HLNFGSI-TL---PA-PPKNYSSSLKNLI-FTSALNPS-SCTLDILFRLPSVR 468 (545)
Q Consensus 399 ~~L~l~~~~l~~lp~~~~~L~~L~---~L~l~~~-~l---p~-~~~~~~~~l~~L~-~L~~~~~~-~~~~~~l~~l~~L~ 468 (545)
++|++++|.+..+|. ++.+++|+ +|++++| .+ |. .+ ..+++|+ .|.+..+. ...+......++|+
T Consensus 108 ~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~----~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF----QGLCNETLTLKLYNNGFTSVQGYAFNGTKLD 182 (239)
T ss_dssp CEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT----TTTBSSEEEEECCSCCCCEECTTTTTTCEEE
T ss_pred CEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccc----cchhcceeEEEcCCCCCcccCHhhcCCCCCC
Confidence 999999998888887 88888888 9999887 43 33 35 7788888 88765552 12233333337888
Q ss_pred EEEEecccCccccch-hHhccCC-CCCcEEEeecCCCCCeeec-c-CCCCCCCccEEEEeccC
Q 039831 469 TLRISGDLSYYQSGV-SKSLCEL-HKLECLKLVNESKPSRMVL-S-EYQFPPSLIQLSLSNTE 527 (545)
Q Consensus 469 ~L~l~~~~~~~~~~~-~~~l~~l-~~L~~L~L~~~~~~~~L~l-P-~l~~l~~L~~L~L~~~~ 527 (545)
.|++.+|. ....+ +..+.++ ++|+.|+|++ +.+.- | . .+++|+.|++++|.
T Consensus 183 ~L~L~~n~--~l~~i~~~~~~~l~~~L~~L~l~~----N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 183 AVYLNKNK--YLTVIDKDAFGGVYSGPSLLDVSQ----TSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCT--TCCEECTTTTTTCSBCCSEEECTT----CCCCCCCCT--TCTTCSEEECTTC-
T ss_pred EEEcCCCC--CcccCCHHHhhccccCCcEEECCC----CccccCChh--HhccCceeeccCcc
Confidence 99998873 23344 4568888 9999999986 33321 4 3 57889999998874
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2.1e-15 Score=146.04 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=79.4
Q ss_pred hcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceee
Q 039831 346 FKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLN 425 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 425 (545)
+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|+ +.++++|++|++++|.+..+|.... ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 445555666666666555555 45555666666666666555554 5556666666666665555553222 5555555
Q ss_pred ecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCC
Q 039831 426 FGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPS 505 (545)
Q Consensus 426 l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 505 (545)
+++|.+ ..++.++.+++|+.|++++|. ...++ .+..+++|+.|+|++ +
T Consensus 113 L~~N~l------------------------~~~~~l~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~----N 160 (263)
T 1xeu_A 113 LDNNEL------------------------RDTDSLIHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHG----N 160 (263)
T ss_dssp CCSSCC------------------------SBSGGGTTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTT----S
T ss_pred ccCCcc------------------------CCChhhcCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCC----C
Confidence 555432 122334555555555555554 22222 455555666666654 2
Q ss_pred eeec-cCCCCCCCccEEEEeccCCchhh
Q 039831 506 RMVL-SEYQFPPSLIQLSLSNTELMEDL 532 (545)
Q Consensus 506 ~L~l-P~l~~l~~L~~L~L~~~~l~~~~ 532 (545)
.+.- +.+..+++|+.|++++|++...|
T Consensus 161 ~i~~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 161 EITNTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCBCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCcchHHhccCCCCCEEeCCCCcccCCc
Confidence 2211 24455566666666666655544
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.56 E-value=4.1e-14 Score=147.95 Aligned_cols=160 Identities=22% Similarity=0.230 Sum_probs=100.9
Q ss_pred CCCCeeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 298 PPANFKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
.+..++.+.+..+....++...+ +++.|.+.++. +..++. ..++|++|++++|.++.+| .++++++|++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~~~--~L~~L~l~~n~---l~~l~~-----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPELPQ--SLKSLLVDNNN---LKALSD-----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCCCT--TCCEEECCSSC---CSCCCS-----CCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CcCCCCEEEccCCcCCccccccC--CCcEEECCCCc---cCcccC-----CCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 34567788887777766654456 77777776665 222221 1157777888877777777 4777777888
Q ss_pred EEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCccccccccccccCCCc
Q 039831 378 LKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCT 457 (545)
Q Consensus 378 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~ 457 (545)
|++++|.++.+|..+ .+|++|++++|.+..+| .++.+++|++|++++|.+.. +. ....+|+.|++..+.-..
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LP---DLPLSLESIVAGNNILEE 229 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CC---CCCTTCCEEECCSSCCSS
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CC---CCcCcccEEECcCCcCCc
Confidence 888777777776543 46777777777777777 47777777777777664321 10 112355566554442222
Q ss_pred hhhcCCCCCCCEEEEeccc
Q 039831 458 LDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 458 ~~~l~~l~~L~~L~l~~~~ 476 (545)
++.++.+++|+.|++++|.
T Consensus 230 lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 230 LPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCCCTTCTTCCEEECCSSC
T ss_pred ccccCCCCCCCEEECCCCc
Confidence 3346666666666666654
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=3.2e-14 Score=139.78 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=131.1
Q ss_pred CCeeEEEEEccCCCCCC--CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCE
Q 039831 300 ANFKRCIILGNQFDFFP--LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKY 377 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~--~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 377 (545)
..++.+.+.++.+...+ ..++ +|+.|.+.++. +..+. + +..+++|+.|++++|.++.+|. ++.+++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~--~L~~L~L~~n~---l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLP--NVTKLFLNGNK---LTDIK--P-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCT--TCCEEECCSSC---CCCCG--G-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred CcccEEEccCCCcccChhHhcCC--CCCEEEccCCc---cCCCc--c-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 46789999988887666 5667 99999999887 44443 3 8999999999999999998654 899999999
Q ss_pred EEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCccccccccccccCCCc
Q 039831 378 LKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCT 457 (545)
Q Consensus 378 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~ 457 (545)
|++++|.++.++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.+.... . +..+++|+.|++..+.-..
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-P-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccch-h-hcCCCccCEEECCCCcCCC
Confidence 999999999884 6899999999999999999884 6999999999999988543211 0 2677777777766653333
Q ss_pred hhhcCCCCCCCEEEEeccc
Q 039831 458 LDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 458 ~~~l~~l~~L~~L~l~~~~ 476 (545)
++.+..+++|+.|++++|.
T Consensus 193 l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 193 LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGGGTTCTTCSEEEEEEEE
T ss_pred ChhhccCCCCCEEECcCCc
Confidence 4557777778888887765
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1.5e-15 Score=152.42 Aligned_cols=232 Identities=13% Similarity=0.078 Sum_probs=169.7
Q ss_pred CCeeEEEEEccCCCCCC-CcC--CCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-C-CCccccCCCC
Q 039831 300 ANFKRCIILGNQFDFFP-LEY--SYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-Q-FPPGLENLYL 374 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~-~~~--~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~-lp~~i~~L~~ 374 (545)
...+++.+..+.+.... ..+ . +++.|.+.++. +....+ .+..+++|+.|++++|.++ . +|..+..+++
T Consensus 47 ~~~~~l~l~~~~~~~~~~~~~~~~--~l~~L~l~~n~---l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSF---MDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCCHHHHHHHHHT--TCSEEECTTCE---ECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCCHHHHHhhhhc--cceEEEcCCcc---ccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 34677777766544211 233 6 88999887766 344443 3567899999999999987 3 7888899999
Q ss_pred CCEEEccCCCCC-ccChhhhccccCcEEecCCC-CCCc--ccHhhhcccccceeeecCc-cCCCC-cccCcCCcc-cccc
Q 039831 375 LKYLKLNIPSLK-CLPSLLCTLLNLETLEMPSS-HIDQ--SPEDIWMMQKLMHLNFGSI-TLPAP-PKNYSSSLK-NLIF 447 (545)
Q Consensus 375 L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~-~l~~--lp~~~~~L~~L~~L~l~~~-~lp~~-~~~~~~~l~-~L~~ 447 (545)
|++|++++|.++ ..|..++++++|++|++++| .+.. +|..+..+++|++|++++| .+... +...+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 999999999877 56778899999999999999 7774 7888999999999999988 65421 222227788 9999
Q ss_pred ccccccC-----CCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec---cCCCCCCCcc
Q 039831 448 TSALNPS-----SCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL---SEYQFPPSLI 519 (545)
Q Consensus 448 L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l---P~l~~l~~L~ 519 (545)
|++..+. ...+..+..+++|+.|++++|. ......+..+..+++|+.|+|++ +. .+.- ..++.+++|+
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~l~~L~~L~l~~--~~-~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFQLNYLQHLSLSR--CY-DIIPETLLELGEIPTLK 275 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-TCCGGGGGGGGGCTTCCEEECTT--CT-TCCGGGGGGGGGCTTCC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC-cCCHHHHHHHhCCCCCCEeeCCC--CC-CCCHHHHHHHhcCCCCC
Confidence 9876652 2234456789999999999986 12244556788999999999985 21 1110 1467799999
Q ss_pred EEEEeccCCchhhhhhhh-ccccce
Q 039831 520 QLSLSNTELMEDLINSEL-ETQVLQ 543 (545)
Q Consensus 520 ~L~L~~~~l~~~~~~~l~-~~~~l~ 543 (545)
.|++++| +....+..+. .++.|.
T Consensus 276 ~L~l~~~-i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 276 TLQVFGI-VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp EEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred EEeccCc-cCHHHHHHHHhhCcceE
Confidence 9999999 6665555553 355554
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=1.8e-14 Score=153.85 Aligned_cols=185 Identities=18% Similarity=0.153 Sum_probs=112.5
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEe
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLE 402 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 402 (545)
+++.|.+.++. +..++. .. +++|++|+|++|.++.+| +.+++|++|++++|.++.+|. +++ +|++|+
T Consensus 60 ~L~~L~Ls~n~---L~~lp~-~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLN---LSSLPD-NL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSC---CSCCCS-CC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCC---CCccCH-hH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 45566665554 333332 22 256777777777766666 345667777777777666666 544 677777
Q ss_pred cCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccc
Q 039831 403 MPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSG 482 (545)
Q Consensus 403 l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 482 (545)
+++|.+..+|. .+++|++|++++|.+.. +. ..+++|+.|.+.++.-..++.+. ++|+.|++++|. ...
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp---~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~---L~~ 194 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNNQLTM-LP---ELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNL---LES 194 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSC---CSS
T ss_pred CCCCcCCCCCC---cCccccEEeCCCCccCc-CC---CcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCC---CCc
Confidence 77776666665 56667777776664332 21 23455666655554211122244 788888888886 335
Q ss_pred hhHhccCCCCC-------cEEEeecCCCCCeee-cc-CCCCCCCccEEEEeccCCchhhhhhhhcc
Q 039831 483 VSKSLCELHKL-------ECLKLVNESKPSRMV-LS-EYQFPPSLIQLSLSNTELMEDLINSELET 539 (545)
Q Consensus 483 ~~~~l~~l~~L-------~~L~L~~~~~~~~L~-lP-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~ 539 (545)
+|. +.. +| +.|+|++ +.+. +| ++..+++|+.|+|++|++.+..+..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~----N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRE----NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCS----SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCC----CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 554 443 56 8899986 3332 37 67779999999999999988776665443
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=1.6e-15 Score=155.38 Aligned_cols=219 Identities=16% Similarity=0.085 Sum_probs=161.3
Q ss_pred CcCCCCceeEEEecCCCCCCCCCC----cchhhhcCCCcccEEEccCCCCC----CCCccc-------cCCCCCCEEEcc
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPK----DCEIFFKRFKYLRVLNMGSAVLD----QFPPGL-------ENLYLLKYLKLN 381 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~----~lp~~i-------~~L~~L~~L~l~ 381 (545)
..++ ++++|.+.++.. ... +. ..+..+++|++|+|++|.+. .+|..+ ..+++|++|+++
T Consensus 29 ~~~~--~L~~L~L~~n~i---~~~~~~~l~-~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 29 LEDD--SVKEIVLSGNTI---GTEAARWLS-ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHCS--CCCEEECTTSEE---CHHHHHHHH-HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred hcCC--CccEEECCCCCC---CHHHHHHHH-HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4566 899999988763 222 12 34778999999999998755 345444 689999999999
Q ss_pred CCCCCc-----cChhhhccccCcEEecCCCCCCc-----ccHhhhcc---------cccceeeecCccCC-CCcc---cC
Q 039831 382 IPSLKC-----LPSLLCTLLNLETLEMPSSHIDQ-----SPEDIWMM---------QKLMHLNFGSITLP-APPK---NY 438 (545)
Q Consensus 382 ~~~i~~-----lp~~i~~L~~L~~L~l~~~~l~~-----lp~~~~~L---------~~L~~L~l~~~~lp-~~~~---~~ 438 (545)
+|.++. +|..+.++++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .++. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999886 78889999999999999998763 34445555 89999999998765 2221 11
Q ss_pred cCCccccccccccccCCC------chh-hcCCCCCCCEEEEecccCc--cccchhHhccCCCCCcEEEeecCCCCCeee-
Q 039831 439 SSSLKNLIFTSALNPSSC------TLD-ILFRLPSVRTLRISGDLSY--YQSGVSKSLCELHKLECLKLVNESKPSRMV- 508 (545)
Q Consensus 439 ~~~l~~L~~L~~~~~~~~------~~~-~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~- 508 (545)
+..+++|++|.+..+.-. ..+ .+..+++|+.|++++|... ....++..+..+++|+.|+|++ +.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~----n~i~~ 258 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND----CLLSA 258 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT----CCCCH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC----CCCch
Confidence 257788888887766222 233 6788999999999999711 1267888999999999999996 3332
Q ss_pred -----cc-CC--CCCCCccEEEEeccCCchh----hhhhh-hccccceeC
Q 039831 509 -----LS-EY--QFPPSLIQLSLSNTELMED----LINSE-LETQVLQVV 545 (545)
Q Consensus 509 -----lP-~l--~~l~~L~~L~L~~~~l~~~----~~~~l-~~~~~l~~l 545 (545)
+| ++ +.+++|+.|+|++|.+... .+..+ ..++.|++|
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 25 55 4489999999999999983 22333 445666653
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=7.3e-16 Score=154.69 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=168.0
Q ss_pred CeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCC-cchhhhcCCCcccEEEccCCCCC-CCCccccCCCCC
Q 039831 301 NFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPK-DCEIFFKRFKYLRVLNMGSAVLD-QFPPGLENLYLL 375 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L 375 (545)
.++.+.+..+.+.... ..++ +|+.|.+.++. +... .+ ..+..+++|+.|++++|.++ ..|..++.+++|
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~--~L~~L~L~~~~---l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPF--RVQHMDLSNSV---IEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCB--CCCEEECTTCE---ECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred cceEEEcCCccccccchhhccCC--CCCEEEccCCC---cCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 4567777666655443 4456 99999998876 3322 44 67889999999999999988 568889999999
Q ss_pred CEEEccCC-CCC--ccChhhhccccCcEEecCCC-CCCc--ccHhhhccc-ccceeeecCc--cCC-CCcccCcCCcccc
Q 039831 376 KYLKLNIP-SLK--CLPSLLCTLLNLETLEMPSS-HIDQ--SPEDIWMMQ-KLMHLNFGSI--TLP-APPKNYSSSLKNL 445 (545)
Q Consensus 376 ~~L~l~~~-~i~--~lp~~i~~L~~L~~L~l~~~-~l~~--lp~~~~~L~-~L~~L~l~~~--~lp-~~~~~~~~~l~~L 445 (545)
++|++++| .++ .+|..+.++++|++|++++| .+.. +|..+..++ +|++|++++| .+. ..+...+..+++|
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 99999999 677 37777899999999999999 8885 688899999 9999999988 333 1221222788899
Q ss_pred ccccccccC---CCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeecc--CCCCC-CCcc
Q 039831 446 IFTSALNPS---SCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVLS--EYQFP-PSLI 519 (545)
Q Consensus 446 ~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~lP--~l~~l-~~L~ 519 (545)
+.|++..+. ...+..+..+++|+.|++++|. .........+.++++|+.|++++ . +| .+..+ .+|.
T Consensus 225 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~----~---i~~~~~~~l~~~l~ 296 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFG----I---VPDGTLQLLKEALP 296 (336)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTT----S---SCTTCHHHHHHHST
T ss_pred CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccC----c---cCHHHHHHHHhhCc
Confidence 999887763 4567788899999999999986 22233234678899999999995 2 23 22333 3466
Q ss_pred EEEEeccCCchhhhhhh
Q 039831 520 QLSLSNTELMEDLINSE 536 (545)
Q Consensus 520 ~L~L~~~~l~~~~~~~l 536 (545)
.|++++|.+++..++..
T Consensus 297 ~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 297 HLQINCSHFTTIARPTI 313 (336)
T ss_dssp TSEESCCCSCCTTCSSC
T ss_pred ceEEecccCccccCCcc
Confidence 77799999998765554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=8.4e-14 Score=133.69 Aligned_cols=120 Identities=20% Similarity=0.178 Sum_probs=64.6
Q ss_pred EEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCCCCCCEEEcc
Q 039831 304 RCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKLN 381 (545)
Q Consensus 304 ~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~ 381 (545)
++...++....++ .-.+ .++.|.+.++. +..+.+ ..|..+++|++|+|++|.++.++ ..+..+++|++|+++
T Consensus 18 ~l~~~~~~l~~~p~~~~~--~l~~L~L~~n~---l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIPA--DTEKLDLQSTG---LATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp EEECTTCCCSSCCSCCCT--TCCEEECTTSC---CCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred EEecCCCCccccCCCCCC--CCCEEEccCCC---cCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3444444444444 2223 55666655555 334444 45556666666666666655443 335556666666666
Q ss_pred CCCCCccChh-hhccccCcEEecCCCCCCcccH-hhhcccccceeeecCc
Q 039831 382 IPSLKCLPSL-LCTLLNLETLEMPSSHIDQSPE-DIWMMQKLMHLNFGSI 429 (545)
Q Consensus 382 ~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~ 429 (545)
+|.++.+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 6666555432 4556666666666665555553 2455666666666555
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=7.4e-15 Score=145.80 Aligned_cols=209 Identities=14% Similarity=0.057 Sum_probs=149.4
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCccc--cCCCCCCEEEccCCCCCcc-C----hhhhc
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPPGL--ENLYLLKYLKLNIPSLKCL-P----SLLCT 394 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i--~~L~~L~~L~l~~~~i~~l-p----~~i~~ 394 (545)
.++.+.+.+..... ..+.....+..++.|+.|++++|.+. ..|..+ +.+.+|++|++++|.+... | ..+..
T Consensus 65 ~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPA-QLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBH-HHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCH-HHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 46667666554210 00000011234567999999999988 557777 8999999999999998753 2 24567
Q ss_pred cccCcEEecCCCCCCccc-HhhhcccccceeeecCccCC------CCcccCcCCccccccccccccCCCchhh-----cC
Q 039831 395 LLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLP------APPKNYSSSLKNLIFTSALNPSSCTLDI-----LF 462 (545)
Q Consensus 395 L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp------~~~~~~~~~l~~L~~L~~~~~~~~~~~~-----l~ 462 (545)
+++|++|++++|.+..+| ..++.+++|++|++++|.+. ... +++.+++|++|.+..+.-..++. ++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL--CPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS--CTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH--hhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 999999999999988886 78899999999999998642 111 12678899999887763332222 46
Q ss_pred CCCCCCEEEEecccCccccchhHhccCC---CCCcEEEeecCCCCCeee-cc-CCCCCCCccEEEEeccCCchhhhhhhh
Q 039831 463 RLPSVRTLRISGDLSYYQSGVSKSLCEL---HKLECLKLVNESKPSRMV-LS-EYQFPPSLIQLSLSNTELMEDLINSEL 537 (545)
Q Consensus 463 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~~L~~L~L~~~~~~~~L~-lP-~l~~l~~L~~L~L~~~~l~~~~~~~l~ 537 (545)
.+++|++|++++|. .....|..+..+ ++|++|+|++ +.+. +| .+. ++|+.|+|++|++.+.|. +.
T Consensus 222 ~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~L~~L~Ls~----N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~ 291 (310)
T 4glp_A 222 AGVQPHSLDLSHNS--LRATVNPSAPRCMWSSALNSLNLSF----AGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PD 291 (310)
T ss_dssp HTCCCSSEECTTSC--CCCCCCSCCSSCCCCTTCCCEECCS----SCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TT
T ss_pred cCCCCCEEECCCCC--CCccchhhHHhccCcCcCCEEECCC----CCCCchhhhhc--CCCCEEECCCCcCCCCch--hh
Confidence 78999999999997 334446556665 7999999996 3332 26 553 899999999999998644 45
Q ss_pred cccccee
Q 039831 538 ETQVLQV 544 (545)
Q Consensus 538 ~~~~l~~ 544 (545)
.++.|+.
T Consensus 292 ~l~~L~~ 298 (310)
T 4glp_A 292 ELPEVDN 298 (310)
T ss_dssp SCCCCSC
T ss_pred hCCCccE
Confidence 5565554
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=3.7e-14 Score=132.03 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=94.1
Q ss_pred CCcccEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCCccChh-hhccccCcEEecCCCCCCcccH-hhhcccccceee
Q 039831 349 FKYLRVLNMGSAVLDQFPPG-LENLYLLKYLKLNIPSLKCLPSL-LCTLLNLETLEMPSSHIDQSPE-DIWMMQKLMHLN 425 (545)
Q Consensus 349 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~ 425 (545)
.++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|. .++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34677777777777766543 56777777777777777777654 4677777777777777777763 356777777777
Q ss_pred ecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCC
Q 039831 426 FGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPS 505 (545)
Q Consensus 426 l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 505 (545)
+++|.+.. .....+..+++|+.|++++|. .....+..+..+++|+.|+|+++
T Consensus 107 L~~N~l~~----------------------~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N---- 158 (208)
T 2o6s_A 107 LNTNQLQS----------------------LPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDN---- 158 (208)
T ss_dssp CCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSC----
T ss_pred cCCCcCcc----------------------cCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCC----
Confidence 76653321 111224556666666666665 22222234566677777777641
Q ss_pred eeeccCCCCCCCccEEEEeccCCchhhhh
Q 039831 506 RMVLSEYQFPPSLIQLSLSNTELMEDLIN 534 (545)
Q Consensus 506 ~L~lP~l~~l~~L~~L~L~~~~l~~~~~~ 534 (545)
|+.+.+++|+.|+++.|.+.+..+.
T Consensus 159 ----~~~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 159 ----PWDCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ----CBCCCTTTTHHHHHHHHHCTTTBBC
T ss_pred ----CeecCCCCHHHHHHHHHhCCceeec
Confidence 2345566666666666666654433
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=8e-14 Score=150.38 Aligned_cols=176 Identities=20% Similarity=0.180 Sum_probs=113.1
Q ss_pred hcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceee
Q 039831 346 FKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLN 425 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 425 (545)
+..++.|+.|++++|.+..+| .++.+++|++|+|++|.+..+|+ ++.+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 445666777777777776665 46677777777777777776665 677777777777777766666 467777777777
Q ss_pred ecCccCC--CCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCC
Q 039831 426 FGSITLP--APPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 503 (545)
Q Consensus 426 l~~~~lp--~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 503 (545)
+++|.+. +.+ ..+++|+.|.+..+.-..+..+..+++|+.|++++|. ...++. +..+++|+.|+|++
T Consensus 116 Ls~N~l~~l~~l----~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~---l~~~~~-l~~l~~L~~L~Ls~--- 184 (605)
T 1m9s_A 116 LEHNGISDINGL----VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ---ISDIVP-LAGLTKLQNLYLSK--- 184 (605)
T ss_dssp CTTSCCCCCGGG----GGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC---CCCCGG-GTTCTTCCEEECCS---
T ss_pred ecCCCCCCCccc----cCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc---CCCchh-hccCCCCCEEECcC---
Confidence 7766432 234 6666777776665533334556677777777777765 222222 66777777777764
Q ss_pred CCeeec-cCCCCCCCccEEEEeccCCchhhhhhh
Q 039831 504 PSRMVL-SEYQFPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 504 ~~~L~l-P~l~~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
+.+.- |.+..+++|+.|+|++|.+.+.|+..+
T Consensus 185 -N~i~~l~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 185 -NHISDLRALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp -SCCCBCGGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred -CCCCCChHHccCCCCCEEEccCCcCcCCccccc
Confidence 22221 355667777777777777776655443
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=2.3e-13 Score=142.28 Aligned_cols=202 Identities=19% Similarity=0.160 Sum_probs=150.0
Q ss_pred CeeEEEEEccCCCCCCCcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEc
Q 039831 301 NFKRCIILGNQFDFFPLEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKL 380 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 380 (545)
.++++.+.++....++...+ +++.|.+.++. +..++ . .+++|++|++++|.++.+|... ++|++|++
T Consensus 72 ~l~~L~l~~~~l~~lp~~~~--~L~~L~l~~n~---l~~lp--~---~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPELPP--HLESLVASCNS---LTELP--E---LPQSLKSLLVDNNNLKALSDLP---PLLEYLGV 138 (454)
T ss_dssp TCSEEECTTSCCSCCCSCCT--TCSEEECCSSC---CSSCC--C---CCTTCCEEECCSSCCSCCCSCC---TTCCEEEC
T ss_pred CCCEEEecCCccccCCCCcC--CCCEEEccCCc---CCccc--c---ccCCCcEEECCCCccCcccCCC---CCCCEEEC
Confidence 46888888888777665556 99999998877 44443 2 2478999999999998776432 68999999
Q ss_pred cCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCcc---CCCCcccCcCCccccccccccccCCCc
Q 039831 381 NIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSIT---LPAPPKNYSSSLKNLIFTSALNPSSCT 457 (545)
Q Consensus 381 ~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~---lp~~~~~~~~~l~~L~~L~~~~~~~~~ 457 (545)
++|.++.+| .++++++|++|++++|.+..+|..+ ++|++|++++|. +| .+ +.+++|+.|.+..+.-..
T Consensus 139 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~----~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 139 SNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-EL----QNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CC----TTCTTCCEEECCSSCCSS
T ss_pred cCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cc----cCCCCCCEEECCCCcCCc
Confidence 999999999 6999999999999999999998643 589999999874 44 56 888999988876553222
Q ss_pred hhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecC---C----CC--Ceeecc--CC----CCCCCccEEE
Q 039831 458 LDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE---S----KP--SRMVLS--EY----QFPPSLIQLS 522 (545)
Q Consensus 458 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~---~----~~--~~L~lP--~l----~~l~~L~~L~ 522 (545)
++. ..++|+.|++++|. ...+| .++.+++|+.|+++++ . ++ +.|++- .+ ..+++|+.|+
T Consensus 210 l~~--~~~~L~~L~l~~n~---l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ 283 (454)
T 1jl5_A 210 LPD--LPLSLESIVAGNNI---LEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 283 (454)
T ss_dssp CCC--CCTTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCC--CcCcccEEECcCCc---CCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEE
Confidence 222 23589999999987 34666 4889999999999973 0 01 444440 11 1135677777
Q ss_pred EeccCCch
Q 039831 523 LSNTELME 530 (545)
Q Consensus 523 L~~~~l~~ 530 (545)
+++|.+.+
T Consensus 284 ls~N~l~~ 291 (454)
T 1jl5_A 284 VSENIFSG 291 (454)
T ss_dssp CCSSCCSE
T ss_pred CcCCccCc
Confidence 77777766
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=3e-14 Score=131.50 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=83.2
Q ss_pred cCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCc-ccHhhhcccccceee
Q 039831 347 KRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQ-SPEDIWMMQKLMHLN 425 (545)
Q Consensus 347 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L~ 425 (545)
..+++|+.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34455556666666555555 4555556666666655544443 45555556666665555543 344455555555555
Q ss_pred ecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCC
Q 039831 426 FGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPS 505 (545)
Q Consensus 426 l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 505 (545)
+++|.+. ...+..++.+++|+.|++++|. ....++ .+..+++|+.|++++ +
T Consensus 119 Ls~n~i~----------------------~~~~~~l~~l~~L~~L~L~~n~--~i~~~~-~l~~l~~L~~L~l~~----n 169 (197)
T 4ezg_A 119 ISHSAHD----------------------DSILTKINTLPKVNSIDLSYNG--AITDIM-PLKTLPELKSLNIQF----D 169 (197)
T ss_dssp CCSSBCB----------------------GGGHHHHTTCSSCCEEECCSCT--BCCCCG-GGGGCSSCCEEECTT----B
T ss_pred ecCCccC----------------------cHhHHHHhhCCCCCEEEccCCC--CccccH-hhcCCCCCCEEECCC----C
Confidence 5544321 1124455666677777777664 233344 466777777777764 2
Q ss_pred eeec-cCCCCCCCccEEEEeccCCch
Q 039831 506 RMVL-SEYQFPPSLIQLSLSNTELME 530 (545)
Q Consensus 506 ~L~l-P~l~~l~~L~~L~L~~~~l~~ 530 (545)
.+.- |.+..+++|+.|++++|++..
T Consensus 170 ~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 170 GVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCCCTTGGGCSSCCEEEECBC----
T ss_pred CCcChHHhccCCCCCEEEeeCcccCC
Confidence 2211 345567777777777777643
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.6e-13 Score=129.00 Aligned_cols=141 Identities=14% Similarity=0.251 Sum_probs=76.1
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCcc
Q 039831 353 RVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 353 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~ 430 (545)
+.++++++.++.+|..+. .+|+.|++++|.++.+|+ .+..+++|++|++++|.+..+ |..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 566777777777766554 567777777777776655 466677777777777766666 4667777777777776653
Q ss_pred C---CCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeec
Q 039831 431 L---PAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 431 l---p~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
+ |.++ |..+++|+.|.+..+ ....+..+..+++|+.|++++|. .....+..+..+++|+.|+|++
T Consensus 92 l~~l~~~~---f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 92 ITELPKSL---FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK--LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCHhH---ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc--CCEECHHHHhCCCCCCEEEeCC
Confidence 3 2221 123333333332222 11122334445555555555554 1111122344455555555543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=5.1e-14 Score=129.97 Aligned_cols=145 Identities=16% Similarity=0.131 Sum_probs=113.9
Q ss_pred ccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCccCCCCcccCcCCccccccc
Q 039831 369 LENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFT 448 (545)
Q Consensus 369 i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L 448 (545)
.+.+.+|++|++++|.++.+| .+..+++|++|++++|.+..+| .+..+++|++|++++|.+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~--------------- 102 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS--------------- 102 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG---------------
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc---------------
Confidence 467888999999999999888 6889999999999999777666 58888899999888765432
Q ss_pred cccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCe-eec-cCCCCCCCccEEEEecc
Q 039831 449 SALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSR-MVL-SEYQFPPSLIQLSLSNT 526 (545)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-L~l-P~l~~l~~L~~L~L~~~ 526 (545)
..+..++.+++|+.|++++|. .....+..++.+++|+.|+|++ +. +.- |.+..+++|+.|++++|
T Consensus 103 -------~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~L~L~~----n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 103 -------DKIPNLSGLTSLTLLDISHSA--HDDSILTKINTLPKVNSIDLSY----NGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp -------GGSCCCTTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCEEECCS----CTBCCCCGGGGGCSSCCEEECTTB
T ss_pred -------ccChhhcCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCEEEccC----CCCccccHhhcCCCCCCEEECCCC
Confidence 112345677889999999987 5555778899999999999996 32 221 56778999999999999
Q ss_pred CCchhhhhhhhccccceeC
Q 039831 527 ELMEDLINSELETQVLQVV 545 (545)
Q Consensus 527 ~l~~~~~~~l~~~~~l~~l 545 (545)
.+.+.+ .+..++.|++|
T Consensus 170 ~i~~~~--~l~~l~~L~~L 186 (197)
T 4ezg_A 170 GVHDYR--GIEDFPKLNQL 186 (197)
T ss_dssp CCCCCT--TGGGCSSCCEE
T ss_pred CCcChH--HhccCCCCCEE
Confidence 998854 56667777653
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.3e-13 Score=128.37 Aligned_cols=121 Identities=20% Similarity=0.245 Sum_probs=93.4
Q ss_pred EEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCCCCCEEEccC
Q 039831 305 CIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLYLLKYLKLNI 382 (545)
Q Consensus 305 l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~ 382 (545)
+....+....++ ...+ +++.|.+.++. +..+++ ..|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 12 v~c~~~~l~~~p~~~~~--~l~~L~l~~n~---l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIPA--QTTYLDLETNS---LKSLPN-GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EECCSSCCSSCCSCCCT--TCSEEECCSSC---CCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEecCCCccCCCCCCCC--CCcEEEcCCCc---cCcCCh-hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 333334444444 4445 78899888877 555665 6788899999999999998877654 57889999999999
Q ss_pred CCCCccChh-hhccccCcEEecCCCCCCcccH-hhhcccccceeeecCccC
Q 039831 383 PSLKCLPSL-LCTLLNLETLEMPSSHIDQSPE-DIWMMQKLMHLNFGSITL 431 (545)
Q Consensus 383 ~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~l 431 (545)
|.++.+|.. +.++++|++|++++|.+..+|. .+..+++|++|++++|.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 998888765 5889999999999998888874 478889999999887743
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=3.6e-13 Score=127.41 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=88.8
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCcc-ChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCc
Q 039831 352 LRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCL-PSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 352 L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~ 429 (545)
.+.++.+++.++.+|..+. .+|++|++++|.+..+ |..+.++++|++|++++|.+..+| ..+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4456777777777776554 6777777777777666 445667777777777777777776 34567777777777665
Q ss_pred cCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec
Q 039831 430 TLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL 509 (545)
Q Consensus 430 ~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l 509 (545)
.+.. + ....+..+++|+.|++++|. ...+|..+..+++|+.|+|++ +.+.-
T Consensus 99 ~l~~-l---------------------~~~~~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~L~~----N~l~~ 149 (229)
T 3e6j_A 99 QLTV-L---------------------PSAVFDRLVHLKELFMCCNK---LTELPRGIERLTHLTHLALDQ----NQLKS 149 (229)
T ss_dssp CCCC-C---------------------CTTTTTTCTTCCEEECCSSC---CCSCCTTGGGCTTCSEEECCS----SCCCC
T ss_pred cCCc-c---------------------ChhHhCcchhhCeEeccCCc---ccccCcccccCCCCCEEECCC----CcCCc
Confidence 4321 1 01123345555555555554 334555556666666666654 22222
Q ss_pred -c--CCCCCCCccEEEEeccCCchh
Q 039831 510 -S--EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 510 -P--~l~~l~~L~~L~L~~~~l~~~ 531 (545)
| .+..+++|+.|+|++|.+.++
T Consensus 150 ~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 150 IPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCCccCC
Confidence 2 455566666666666666554
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=3.6e-13 Score=126.58 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=54.8
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh--hhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCc
Q 039831 353 RVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS--LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 353 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~ 429 (545)
+.++++++.++.+|..+.. .+++|++++|.++.+++ .+.++++|++|++++|.+..+| ..|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4777777777777776543 45778888877777743 3677777888888777777776 36777777777777766
Q ss_pred cC
Q 039831 430 TL 431 (545)
Q Consensus 430 ~l 431 (545)
.+
T Consensus 92 ~l 93 (220)
T 2v70_A 92 RL 93 (220)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.45 E-value=4.3e-13 Score=146.03 Aligned_cols=175 Identities=20% Similarity=0.182 Sum_probs=96.8
Q ss_pred cCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccC--hhhhccccCcEEecCCCCCCccc-Hhhhcccccce
Q 039831 347 KRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLP--SLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMH 423 (545)
Q Consensus 347 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~ 423 (545)
..+..|+.|++..+.+...+..+..+.+|+++++.++.....+ ..+.++.+++.++++.|.+..++ ..+..+++|+.
T Consensus 394 ~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473 (635)
T ss_dssp HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred hhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 3344444444444444333444445555555555554432221 23455566666666666555443 45566666666
Q ss_pred eeecCcc-----CCCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEE
Q 039831 424 LNFGSIT-----LPAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECL 496 (545)
Q Consensus 424 L~l~~~~-----lp~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 496 (545)
|++++|. .|..+ ..+++|+.|++.++ .+..+..|+.+++|+.|++++|. .....+..+.++++|+.|
T Consensus 474 L~Ls~N~~~~~~~~~~~----~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~--l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIF----TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp EECTTCEEGGGEECSCC----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCBCCCGGGTTCTTCCEE
T ss_pred hhhhhcccccccCchhh----hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc--CCCCChhHHhCCCCCCEE
Confidence 6666552 34444 66666666665554 23334456667777777777665 223334556667777777
Q ss_pred EeecCCCCCeeec--c-CCCCC-CCccEEEEeccCCchh
Q 039831 497 KLVNESKPSRMVL--S-EYQFP-PSLIQLSLSNTELMED 531 (545)
Q Consensus 497 ~L~~~~~~~~L~l--P-~l~~l-~~L~~L~L~~~~l~~~ 531 (545)
+|++ +.+.- | ++..+ ++|++|+|++|++.++
T Consensus 548 ~Ls~----N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 548 DYSL----NHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ECTT----SCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred ECCC----CcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 7765 34433 4 56665 4677777777777664
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=2.8e-13 Score=131.03 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=117.8
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccc
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLL 396 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~ 396 (545)
..++ +++.|.+.++. +..+ +.+..+++|+.|++++|.++.+|. ++.+++|++|++++|.++.+|... . .
T Consensus 38 ~~l~--~L~~L~l~~n~---i~~l---~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~ 106 (263)
T 1xeu_A 38 KELS--GVQNFNGDNSN---IQSL---AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-A 106 (263)
T ss_dssp HHHT--TCSEEECTTSC---CCCC---TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-S
T ss_pred hhcC--cCcEEECcCCC---cccc---hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-C
Confidence 4566 99999998886 4444 457889999999999999998877 999999999999999999988643 3 8
Q ss_pred cCcEEecCCCCCCcccHhhhcccccceeeecCccCC--CCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEec
Q 039831 397 NLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSITLP--APPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISG 474 (545)
Q Consensus 397 ~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~lp--~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (545)
+|++|++++|.+..+| .++.+++|++|++++|.+. +.+ +.+++|+.|++..+.-.....+..+++|+.|++++
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l----~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVML----GFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGG----GGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEE
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHH----ccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCC
Confidence 9999999999999987 4999999999999988543 244 77788888877666333336677888888888888
Q ss_pred cc
Q 039831 475 DL 476 (545)
Q Consensus 475 ~~ 476 (545)
+.
T Consensus 182 N~ 183 (263)
T 1xeu_A 182 QK 183 (263)
T ss_dssp EE
T ss_pred Cc
Confidence 76
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=2.1e-13 Score=138.32 Aligned_cols=166 Identities=22% Similarity=0.214 Sum_probs=100.5
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChh-hh-ccccCcEEecCCCCCCccc-HhhhcccccceeeecCc
Q 039831 353 RVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSL-LC-TLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 353 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~-i~-~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~ 429 (545)
++++++++.++.+|..+. ..+++|+|++|.++.+|.. +. ++.+|++|++++|.+..+| ..|..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 466666666666666543 3466666666666666554 33 6666666666666666665 45666666666666665
Q ss_pred cC---CC-CcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHh-c---cCCCCCcEEEee
Q 039831 430 TL---PA-PPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKS-L---CELHKLECLKLV 499 (545)
Q Consensus 430 ~l---p~-~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l---~~l~~L~~L~L~ 499 (545)
.+ |. .+ ..+++|+.|.+.++ ....+..+..+++|+.|++++|. ...+|.. + ..+++|+.|+|+
T Consensus 99 ~l~~~~~~~~----~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~---l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 99 HLHTLDEFLF----SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ---ISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCSCCGGGTC----CTTCCEEECC
T ss_pred cCCcCCHHHh----CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc---CCeeCHHHhcCcccCCcCCEEECC
Confidence 33 22 23 55666666655544 22234456777888888888776 3334433 2 567888888887
Q ss_pred cCCCCCeeec-c--CCCCCCC--ccEEEEeccCCchh
Q 039831 500 NESKPSRMVL-S--EYQFPPS--LIQLSLSNTELMED 531 (545)
Q Consensus 500 ~~~~~~~L~l-P--~l~~l~~--L~~L~L~~~~l~~~ 531 (545)
+ +.+.- | .+..++. |+.|+|++|++..+
T Consensus 172 ~----N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 172 S----NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp S----SCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred C----CCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 6 33322 3 4455565 47788888888764
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=3.4e-13 Score=136.15 Aligned_cols=168 Identities=13% Similarity=0.028 Sum_probs=85.5
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCC-CCCc-cccCCCCCCE-EEccCCCCCccCh-hhhccccC
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLD-QFPP-GLENLYLLKY-LKLNIPSLKCLPS-LLCTLLNL 398 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~-~i~~L~~L~~-L~l~~~~i~~lp~-~i~~L~~L 398 (545)
+++.|.+.++. +..+++ ..|.++++|++|+|++|.+. .+|. .+.++++|+. +.+.+|++..+|+ .+..+++|
T Consensus 31 ~l~~L~Ls~N~---i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 31 NAIELRFVLTK---LRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TCSEEEEESCC---CSEECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCEEEccCCc---CCCcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 56666666655 444544 55666666666666666653 3332 3455665554 3444556666643 35666666
Q ss_pred cEEecCCCCCCccc-HhhhcccccceeeecCc----cCCCC-cccCcCCc-cccccccccccC-CCchhhcCCCCCCCEE
Q 039831 399 ETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI----TLPAP-PKNYSSSL-KNLIFTSALNPS-SCTLDILFRLPSVRTL 470 (545)
Q Consensus 399 ~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~----~lp~~-~~~~~~~l-~~L~~L~~~~~~-~~~~~~l~~l~~L~~L 470 (545)
++|++++|.+..+| ..+....++..|++.++ .+|.. + ..+ ..++.|.+..+. ...+......++|++|
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f----~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF----VGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSSCCCEECTTSSTTEEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccch----hhcchhhhhhccccccccCCChhhccccchhHH
Confidence 66666666666665 23444445555655432 22221 2 222 234444443331 1122223334455555
Q ss_pred EEecccCccccchh-HhccCCCCCcEEEeec
Q 039831 471 RISGDLSYYQSGVS-KSLCELHKLECLKLVN 500 (545)
Q Consensus 471 ~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~ 500 (545)
.+.++. ....+| ..|.++++|+.|+|++
T Consensus 183 ~l~~~n--~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 183 NLSDNN--NLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp ECTTCT--TCCCCCTTTTTTEECCSEEECTT
T ss_pred hhccCC--cccCCCHHHhccCcccchhhcCC
Confidence 555432 344444 3456666666666664
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.9e-12 Score=122.33 Aligned_cols=103 Identities=26% Similarity=0.373 Sum_probs=66.2
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCCccChh-hhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLYLLKYLKLNIPSLKCLPSL-LCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~ 400 (545)
+++.|.+.++. +..+.+ ..|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.++.+|.. +..+++|++
T Consensus 41 ~L~~L~Ls~n~---i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 41 NAQILYLHDNQ---ITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TCSEEECCSSC---CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEcCCCc---cCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 66666666655 444544 5566666667777766666666533 45666667777766666666554 456666667
Q ss_pred EecCCCCCCcccHhhhcccccceeeecCc
Q 039831 401 LEMPSSHIDQSPEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 401 L~l~~~~l~~lp~~~~~L~~L~~L~l~~~ 429 (545)
|++++|.+..+|..+..+++|++|++++|
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred EeccCCcccccCcccccCCCCCEEECCCC
Confidence 77766666666666666666666666665
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.40 E-value=3.2e-14 Score=149.13 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=15.8
Q ss_pred CCCCCCCccEEEEeccCCchhhhhhh
Q 039831 511 EYQFPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 511 ~l~~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
.+..+++|++|+|++|.+....+..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHH
Confidence 44446677777777777666544443
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=2.3e-12 Score=137.68 Aligned_cols=169 Identities=16% Similarity=0.119 Sum_probs=129.9
Q ss_pred CeeEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEE
Q 039831 301 NFKRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLK 379 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 379 (545)
+++.+.+.++.+..++ .-++ +|+.|.+.++. +..++ ..+++|++|++++|.++.+|. +++ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~--~L~~L~Ls~N~---l~~ip-----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPP--QITVLEITQNA---LISLP-----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCT--TCSEEECCSSC---CSCCC-----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhHcC--CCCEEECcCCC---Ccccc-----cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 5788888888877766 3456 89999998887 44332 457889999999999998888 665 899999
Q ss_pred ccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCcc---CCCCcccCcCCccccccccccccCCC
Q 039831 380 LNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSIT---LPAPPKNYSSSLKNLIFTSALNPSSC 456 (545)
Q Consensus 380 l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~---lp~~~~~~~~~l~~L~~L~~~~~~~~ 456 (545)
+++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|. +|. + + ++|+.|++.++.-.
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l----~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-L----P--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-C----C--TTCCEEECCSSCCS
T ss_pred CCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-h----h--CCCCEEECcCCCCC
Confidence 99999998887 68899999999998888887 57889999998884 454 5 5 78888877666222
Q ss_pred chhhcCCCCCC-------CEEEEecccCccccchhHhccCCCCCcEEEeec
Q 039831 457 TLDILFRLPSV-------RTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 457 ~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
.++.+.. +| +.|++++|. ...+|..+..+++|+.|+|++
T Consensus 194 ~lp~~~~--~L~~~~~~L~~L~Ls~N~---l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 194 SLPAVPV--RNHHSEETEIFFRCRENR---ITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp SCCCCC----------CCEEEECCSSC---CCCCCGGGGGSCTTEEEECCS
T ss_pred chhhHHH--hhhcccccceEEecCCCc---ceecCHHHhcCCCCCEEEeeC
Confidence 2222443 56 899999886 557888888899999999997
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=2.1e-12 Score=121.27 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=48.0
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCccChh-hhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNIPSLKCLPSL-LCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~ 400 (545)
+++.|.+.++. +..+++ ..|..+++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|.. +.++++|++
T Consensus 33 ~l~~L~l~~n~---i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 33 TITEIRLEQNT---IKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TCCEEECCSSC---CCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCc---CCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 44444444443 233333 3444445555555555554433 44444555555555555555444443 244455555
Q ss_pred EecCCCCCCccc-HhhhcccccceeeecCc
Q 039831 401 LEMPSSHIDQSP-EDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 401 L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~ 429 (545)
|++++|.+..++ ..|..+++|++|++++|
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 555555444442 34444445555554444
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.36 E-value=2.9e-12 Score=129.28 Aligned_cols=212 Identities=15% Similarity=0.118 Sum_probs=155.9
Q ss_pred CCCCeeEEEEEccCCCCCC----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccE-EEccCCCCCCC-CccccC
Q 039831 298 PPANFKRCIILGNQFDFFP----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRV-LNMGSAVLDQF-PPGLEN 371 (545)
Q Consensus 298 ~~~~~r~l~~~~~~~~~~~----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~L~~~~l~~l-p~~i~~ 371 (545)
.+.++++|.+..+.+..++ ..++ +|+.|.+.++.. ...++. ..|.+++.|.. +.+.+|.++.+ |..+..
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~--~L~~L~Ls~N~i--~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDV--LEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCT--TCCEEEEECCTT--CCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCC--CCCEEECcCCCC--CCccCh-hHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 4567899999999998776 3456 999999998873 233444 67888888765 66777889977 566889
Q ss_pred CCCCCEEEccCCCCCccChh-hhccccCcEEecCCC-CCCccc-Hhhhccc-ccceeeecCc---cCCCCcccCcCCccc
Q 039831 372 LYLLKYLKLNIPSLKCLPSL-LCTLLNLETLEMPSS-HIDQSP-EDIWMMQ-KLMHLNFGSI---TLPAPPKNYSSSLKN 444 (545)
Q Consensus 372 L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~-~l~~lp-~~~~~L~-~L~~L~l~~~---~lp~~~~~~~~~l~~ 444 (545)
+++|++|++++|.+..+|+. +....++..|++.++ .+..+| ..+..+. .++.|++++| .+|.+. ....+
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f~~~~ 178 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----FNGTQ 178 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----STTEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----ccccc
Confidence 99999999999999988763 456667889999776 888887 4566664 6889999887 456666 56678
Q ss_pred ccccccccc--CCCch-hhcCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCC--CeeeccCCCCCCCcc
Q 039831 445 LIFTSALNP--SSCTL-DILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP--SRMVLSEYQFPPSLI 519 (545)
Q Consensus 445 L~~L~~~~~--~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~--~~L~lP~l~~l~~L~ 519 (545)
|++|.+... ....+ ..++.+++|+.|++++|. ...+|. ..+.+|+.|.+.+ ++ +.+ |.+.++++|+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~---l~~lp~--~~~~~L~~L~~l~--~~~l~~l--P~l~~l~~L~ 249 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTR---IHSLPS--YGLENLKKLRARS--TYNLKKL--PTLEKLVALM 249 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC---CCCCCS--SSCTTCCEEECTT--CTTCCCC--CCTTTCCSCC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCC---cCccCh--hhhccchHhhhcc--CCCcCcC--CCchhCcChh
Confidence 888876543 23333 346889999999999986 555553 2356667776652 22 344 6777889999
Q ss_pred EEEEeccC
Q 039831 520 QLSLSNTE 527 (545)
Q Consensus 520 ~L~L~~~~ 527 (545)
.++++++.
T Consensus 250 ~l~l~~~~ 257 (350)
T 4ay9_X 250 EASLTYPS 257 (350)
T ss_dssp EEECSCHH
T ss_pred hCcCCCCc
Confidence 99987643
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=9.2e-14 Score=153.54 Aligned_cols=106 Identities=22% Similarity=0.186 Sum_probs=82.8
Q ss_pred hhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccce
Q 039831 344 IFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMH 423 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~ 423 (545)
..|..++.|+.|+|++|.+..+|..++.+.+|++|+|++|.++.+|..+++|++|++|+|++|.+..+|..|+.|++|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 67778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred eeecCc---cCCCCcccCcCCcccccccccccc
Q 039831 424 LNFGSI---TLPAPPKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 424 L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~ 453 (545)
|++++| .+|.++ +.+++|+.|++..+
T Consensus 298 L~L~~N~l~~lp~~~----~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEF----GNLCNLQFLGVEGN 326 (727)
T ss_dssp EECCSSCCCCCCSST----TSCTTCCCEECTTS
T ss_pred EECCCCCCCccChhh----hcCCCccEEeCCCC
Confidence 888876 456666 77777777776555
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=4.5e-14 Score=147.93 Aligned_cols=226 Identities=15% Similarity=0.002 Sum_probs=142.2
Q ss_pred CeeEEEEEccCCCCCC--------CcCCCCceeEEEecCCCCCCCCCCcchhhh-----cCCCcccEEEccCCCCCC---
Q 039831 301 NFKRCIILGNQFDFFP--------LEYSYMYLQSFLNHSSKSNHLNPKDCEIFF-----KRFKYLRVLNMGSAVLDQ--- 364 (545)
Q Consensus 301 ~~r~l~~~~~~~~~~~--------~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~l~~--- 364 (545)
+++++.+..+.+.... ..++ +|+.|.+.++.. ..... ..+ ...++|+.|++++|.++.
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~i---~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKP--DFKELTVSNNDI---NEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCT--TCCEEECCSSBC---HHHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCC--CCCEEECcCCCc---chHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 5777887777665422 3456 888888877662 11111 112 135688888888888774
Q ss_pred --CCccccCCCCCCEEEccCCCCCcc-----Chh-hhccccCcEEecCCCCCCc-----ccHhhhcccccceeeecCccC
Q 039831 365 --FPPGLENLYLLKYLKLNIPSLKCL-----PSL-LCTLLNLETLEMPSSHIDQ-----SPEDIWMMQKLMHLNFGSITL 431 (545)
Q Consensus 365 --lp~~i~~L~~L~~L~l~~~~i~~l-----p~~-i~~L~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~l 431 (545)
++..+..+++|++|++++|.++.. ++. ...+++|++|++++|.++. +|..+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 466677788888888888876542 122 2357788888888887776 677778888888888887754
Q ss_pred CC----CcccC-cCCccccccccccccC--CC----chhhcCCCCCCCEEEEecccCc--cccchhHhccC-CCCCcEEE
Q 039831 432 PA----PPKNY-SSSLKNLIFTSALNPS--SC----TLDILFRLPSVRTLRISGDLSY--YQSGVSKSLCE-LHKLECLK 497 (545)
Q Consensus 432 p~----~~~~~-~~~l~~L~~L~~~~~~--~~----~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~-l~~L~~L~ 497 (545)
.. .+... ....++|+.|++..+. .. .+..+..+++|+.|++++|.-. ....+...+.. .++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 21 11000 0122477777766552 11 2334556788888888887611 11222233332 56888888
Q ss_pred eecCCCCCeee------cc-CCCCCCCccEEEEeccCCchhhhhhh
Q 039831 498 LVNESKPSRMV------LS-EYQFPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 498 L~~~~~~~~L~------lP-~l~~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
|++ ..+. +| ++..+++|++|+|++|++.+.....+
T Consensus 377 L~~----n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 377 LAD----CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418 (461)
T ss_dssp CTT----SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred CCC----CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHH
Confidence 885 3332 26 66678888888888888887655443
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=6.4e-12 Score=117.96 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=78.8
Q ss_pred cccEEEccCCCCCCCC--ccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCccc-Hhhhcccccceeee
Q 039831 351 YLRVLNMGSAVLDQFP--PGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNF 426 (545)
Q Consensus 351 ~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l 426 (545)
.++.|+|++|.++.++ ..++.+++|++|++++|.++.+|+ .+.++++|++|++++|.+..+| ..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4577777777777553 236777778888887777777765 5777777888888777777776 44777777777777
Q ss_pred cCccC----CCCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEeccc
Q 039831 427 GSITL----PAPPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 427 ~~~~l----p~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~ 476 (545)
++|.+ |..+ ..+++|+.|++..+ .+..+..+..+++|+.|++.+|.
T Consensus 113 s~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSF----IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSS----TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHc----CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 76643 2333 55555555554443 22233445556666666666654
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=3.2e-13 Score=137.02 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=116.6
Q ss_pred CCeeEEEEEccCCCCCC-----Cc-CCCC-ceeEEEecCCCCCCCCCCcchhhhcCC-----CcccEEEccCCCCCCCC-
Q 039831 300 ANFKRCIILGNQFDFFP-----LE-YSYM-YLQSFLNHSSKSNHLNPKDCEIFFKRF-----KYLRVLNMGSAVLDQFP- 366 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~-----~~-~~~~-~lr~L~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~l~~lp- 366 (545)
..++++.+..+.+.... .. ..++ +|+.|.+.++. +..... ..+..+ ++|++|+|++|.++..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~---l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS---LGFKNS-DELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC---GGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC---CCHHHH-HHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 44666666666655432 00 0011 56667666665 222222 333332 66777777777766432
Q ss_pred cc----ccCC-CCCCEEEccCCCCCccChh-----hhc-cccCcEEecCCCCCC-----cccHhhhccc-ccceeeecCc
Q 039831 367 PG----LENL-YLLKYLKLNIPSLKCLPSL-----LCT-LLNLETLEMPSSHID-----QSPEDIWMMQ-KLMHLNFGSI 429 (545)
Q Consensus 367 ~~----i~~L-~~L~~L~l~~~~i~~lp~~-----i~~-L~~L~~L~l~~~~l~-----~lp~~~~~L~-~L~~L~l~~~ 429 (545)
.. +..+ ++|++|++++|.++..+.. +.. ..+|++|++++|.++ .++..+..++ +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 22 3333 6677777777776655432 222 246777777777555 3444455554 6777777766
Q ss_pred cCCC----CcccCcCCc-ccccccccccc--CCC----chhhcCC-CCCCCEEEEecccC--ccccchhHhccCCCCCcE
Q 039831 430 TLPA----PPKNYSSSL-KNLIFTSALNP--SSC----TLDILFR-LPSVRTLRISGDLS--YYQSGVSKSLCELHKLEC 495 (545)
Q Consensus 430 ~lp~----~~~~~~~~l-~~L~~L~~~~~--~~~----~~~~l~~-l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~ 495 (545)
.+.. .+...+... ++|+.|++..+ ... .+..+.. .++|+.|++++|.- .....+...+..+++|+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 4421 110001223 46666665544 111 1222333 23677777776651 112233445566677777
Q ss_pred EEeecCC---CC-Ceee-cc-CCCCCCCccEEEEeccCCchh
Q 039831 496 LKLVNES---KP-SRMV-LS-EYQFPPSLIQLSLSNTELMED 531 (545)
Q Consensus 496 L~L~~~~---~~-~~L~-lP-~l~~l~~L~~L~L~~~~l~~~ 531 (545)
|+|+++. .. ..+. ++ .+..+++|+.|++++|++...
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 7776510 00 0011 13 556677777777777777664
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=5.1e-13 Score=135.51 Aligned_cols=201 Identities=13% Similarity=0.056 Sum_probs=139.5
Q ss_pred ceeEEEecCCCCCCCCCCcc---hhhhcCCC-cccEEEccCCCCCCC-CccccCC-----CCCCEEEccCCCCCccChh-
Q 039831 323 YLQSFLNHSSKSNHLNPKDC---EIFFKRFK-YLRVLNMGSAVLDQF-PPGLENL-----YLLKYLKLNIPSLKCLPSL- 391 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~---~~~~~~l~-~L~~L~L~~~~l~~l-p~~i~~L-----~~L~~L~l~~~~i~~lp~~- 391 (545)
+++.|++.++.. ..... ...+..++ +|++|+|++|.++.. +..++.+ .+|++|++++|.++..+..
T Consensus 23 ~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 23 GVTSLDLSLNNL---YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TCCEEECTTSCG---GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CceEEEccCCCC---ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 699999988873 22221 03567788 899999999998854 5566665 8999999999998866543
Q ss_pred ----hhcc-ccCcEEecCCCCCCccc-Hhhhc-----ccccceeeecCccCCC----CcccCcCCcc-cccccccccc--
Q 039831 392 ----LCTL-LNLETLEMPSSHIDQSP-EDIWM-----MQKLMHLNFGSITLPA----PPKNYSSSLK-NLIFTSALNP-- 453 (545)
Q Consensus 392 ----i~~L-~~L~~L~l~~~~l~~lp-~~~~~-----L~~L~~L~l~~~~lp~----~~~~~~~~l~-~L~~L~~~~~-- 453 (545)
+..+ ++|++|++++|.+...+ ..+.. .++|++|++++|.+.. .+...+..+. +|++|++..+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 4445 89999999999888776 34433 2589999999885542 1111113343 8888877666
Q ss_pred CCCchhh----cCCC-CCCCEEEEeccc--CccccchhHhccCC-CCCcEEEeecCCCCCeeec------c-CCCCCCCc
Q 039831 454 SSCTLDI----LFRL-PSVRTLRISGDL--SYYQSGVSKSLCEL-HKLECLKLVNESKPSRMVL------S-EYQFPPSL 518 (545)
Q Consensus 454 ~~~~~~~----l~~l-~~L~~L~l~~~~--~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~L~l------P-~l~~l~~L 518 (545)
....+.. +..+ ++|+.|++++|. ......++..+... ++|+.|+|++ +.+.- + .+..+++|
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~----N~l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL----NCLHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS----SCCCCCCHHHHHHTTTTTTTC
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC----CCCCcHHHHHHHHHHhcCCCc
Confidence 2333322 3445 599999999987 11223367777764 5999999996 22221 3 56778999
Q ss_pred cEEEEeccCCch
Q 039831 519 IQLSLSNTELME 530 (545)
Q Consensus 519 ~~L~L~~~~l~~ 530 (545)
+.|+|++|.+.+
T Consensus 256 ~~L~L~~n~l~~ 267 (362)
T 3goz_A 256 QTVYLDYDIVKN 267 (362)
T ss_dssp SEEEEEHHHHTT
T ss_pred cEEEeccCCccc
Confidence 999999998444
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=3.2e-12 Score=114.52 Aligned_cols=102 Identities=22% Similarity=0.173 Sum_probs=57.4
Q ss_pred ceeEEEecCCCCCCCC-CCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCc-cChhhhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLN-PKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKC-LPSLLCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~-lp~~i~~L~~L~~ 400 (545)
+++.|.+.++. +. ...+ ..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 25 ~L~~L~l~~n~---l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 25 AVRELVLDNCK---SNDGKIE-GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCSEEECCSCB---CBTTBCS-SCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cCCEEECCCCC---CChhhHH-HHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 55566555554 22 1122 3345556666666666665554 555566666666666666555 4444555666666
Q ss_pred EecCCCCCCccc--HhhhcccccceeeecCc
Q 039831 401 LEMPSSHIDQSP--EDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 401 L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~ 429 (545)
|++++|.+..+| ..+..+++|++|++++|
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 666666665554 45556666666666555
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.9e-12 Score=113.57 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=95.5
Q ss_pred CCCcccEEEccCCCCC--CCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCc-ccHhhhccccccee
Q 039831 348 RFKYLRVLNMGSAVLD--QFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQ-SPEDIWMMQKLMHL 424 (545)
Q Consensus 348 ~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L 424 (545)
..++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.+.. +|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4467889999999887 7888888899999999999988887 678888999999999998877 77878888999999
Q ss_pred eecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchh----HhccCCCCCcEEEee
Q 039831 425 NFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVS----KSLCELHKLECLKLV 499 (545)
Q Consensus 425 ~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~l~~l~~L~~L~L~ 499 (545)
++++|.+.. + . .+..++.+++|+.|++++|. ...++ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~-~-------~-------------~~~~~~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKD-L-------S-------------TIEPLKKLENLKSLDLFNCE---VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCS-H-------H-------------HHGGGGGCTTCCEEECTTCG---GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCC-h-------H-------------HHHHHhhCCCCCEEeCcCCc---ccchHHHHHHHHHHCCCcccccCC
Confidence 988775421 1 0 11345566777788887775 22222 357777888887765
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=2e-12 Score=113.42 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=96.9
Q ss_pred ceeEEEecCCCCCCCC-CCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCc-cChhhhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLN-PKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKC-LPSLLCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~-lp~~i~~L~~L~~ 400 (545)
+++.|.+.++. +. ...+ ..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++
T Consensus 18 ~l~~L~l~~n~---l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 18 DVKELVLDNSR---SNEGKLE-GLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GCSEEECTTCB---CBTTBCC-SCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred cCeEEEccCCc---CChhHHH-HHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 88999988877 33 3334 6678899999999999999877 778899999999999999988 7777778999999
Q ss_pred EecCCCCCCccc--HhhhcccccceeeecCccC---CC----CcccCcCCccccccccc
Q 039831 401 LEMPSSHIDQSP--EDIWMMQKLMHLNFGSITL---PA----PPKNYSSSLKNLIFTSA 450 (545)
Q Consensus 401 L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~l---p~----~~~~~~~~l~~L~~L~~ 450 (545)
|++++|.+..+| ..++.+++|++|++++|.+ |. .+ +.+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF----KLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHH----HHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHH----HHCCCcccccC
Confidence 999999998876 7899999999999998843 33 23 56666666654
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=1.9e-12 Score=115.98 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=99.0
Q ss_pred CCCcccEEEccCCCCC--CCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCc-ccHhhhccccccee
Q 039831 348 RFKYLRVLNMGSAVLD--QFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQ-SPEDIWMMQKLMHL 424 (545)
Q Consensus 348 ~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L 424 (545)
..+.|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4578999999999998 8898899999999999999999988 778999999999999998888 78888889999999
Q ss_pred eecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchh----HhccCCCCCcEEEeec
Q 039831 425 NFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVS----KSLCELHKLECLKLVN 500 (545)
Q Consensus 425 ~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~l~~l~~L~~L~L~~ 500 (545)
++++|.+.. + . .+..+..+++|+.|++++|. ...++ ..+..+++|+.|++++
T Consensus 101 ~Ls~N~l~~-~-------~-------------~~~~l~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLKD-I-------S-------------TLEPLKKLECLKSLDLFNCE---VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCCS-S-------G-------------GGGGGSSCSCCCEEECCSSG---GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccCc-c-------h-------------hHHHHhcCCCCCEEEeeCCc---CcchHHHHHHHHHhCccCcEecCCC
Confidence 999875431 1 0 01234556666666666665 22223 2566667777777664
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=4.5e-12 Score=128.46 Aligned_cols=119 Identities=21% Similarity=0.181 Sum_probs=68.0
Q ss_pred EEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhc-CCCcccEEEccCCCCCCCC-ccccCCCCCCEEEcc
Q 039831 305 CIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFK-RFKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKLN 381 (545)
Q Consensus 305 l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~ 381 (545)
+....+....++ .-.. .++.|++.++. +..+.+ ..|. .+++|+.|+|++|.++.++ ..+..+++|++|+|+
T Consensus 23 l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~---l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLPS--YTALLDLSHNN---LSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EECCSSCCSSCCSSCCT--TCSEEECCSSC---CCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccCccCCC--CCCEEECCCCC---CCccCh-hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 344444444444 2233 55666665555 344444 4444 6666666666666666553 346666666666666
Q ss_pred CCCCCccCh-hhhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCc
Q 039831 382 IPSLKCLPS-LLCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 382 ~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~ 429 (545)
+|.++.+|. .+.++.+|++|++++|.+..+ |..|..+++|++|++++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 666666654 355666666666666666655 355666666666666655
No 122
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.27 E-value=1.1e-12 Score=141.96 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=82.1
Q ss_pred CCeeEEEEEccCCCCCC-----CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCC-----CCccc
Q 039831 300 ANFKRCIILGNQFDFFP-----LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQ-----FPPGL 369 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~-----~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i 369 (545)
..++.+.+..+.+.... ..++ .+|++|.+.++... ...... ....++++|++|+|++|.++. ++...
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~-~~L~~L~L~~~~~~-~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARA-DDLETLKLDKCSGF-TTDGLL-SIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHG-GGCCEEEEESCEEE-EHHHHH-HHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhcc-ccCcEEECcCCCCc-CHHHHH-HHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 45777888777544221 2233 03888888776521 000111 233477888888888887642 22334
Q ss_pred cCCCCCCEEEccCCCCC-----ccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecC
Q 039831 370 ENLYLLKYLKLNIPSLK-----CLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGS 428 (545)
Q Consensus 370 ~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~ 428 (545)
..+++|++|++++|.++ .++..+.++++|++|++++|.+..+|..+..+++|++|+++.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 56788888888888775 344455677888888888887777888788888888888863
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=1.2e-11 Score=111.83 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=66.3
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhh-hccccCcEE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLL-CTLLNLETL 401 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L 401 (545)
+++.|.+.++. +..+ + ......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +.+++|++|
T Consensus 20 ~L~~L~l~~n~---l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 20 RDRELDLRGYK---IPVI-E-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp SCEEEECTTSC---CCSC-C-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CceEEEeeCCC---Cchh-H-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 66777776665 3333 2 2223333677777777777655 55667777777777777777776554 677777777
Q ss_pred ecCCCCCCcccH--hhhcccccceeeecCcc
Q 039831 402 EMPSSHIDQSPE--DIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 402 ~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~ 430 (545)
++++|.+..+|. .++.+++|++|++++|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 777777777765 66677777777776663
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1.6e-12 Score=143.61 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=93.4
Q ss_pred EEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCc---cC
Q 039831 355 LNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI---TL 431 (545)
Q Consensus 355 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~---~l 431 (545)
++++.|.+...|..+..+.+|+.|+|++|.+..+|..+.++++|++|+|++|.+..+|..|++|++|++|++++| .+
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 344445555557788999999999999999999999999999999999999999999999999999999999988 56
Q ss_pred CCCcccCcCCcccccccccccc-CCCchhhcCCCCCCCEEEEeccc
Q 039831 432 PAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 432 p~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~ 476 (545)
|..+ +.|++|+.|.+.++ -...+..|+.|++|+.|++++|.
T Consensus 286 p~~~----~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 286 PAEL----GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSSG----GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred Chhh----cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 7777 99999999988777 34556679999999999999987
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=6.3e-12 Score=113.61 Aligned_cols=131 Identities=16% Similarity=0.125 Sum_probs=96.1
Q ss_pred hhhcCCCcccEEEccCCCCCCCCccccCCC-CCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHh-hhccccc
Q 039831 344 IFFKRFKYLRVLNMGSAVLDQFPPGLENLY-LLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPED-IWMMQKL 421 (545)
Q Consensus 344 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L 421 (545)
..+..+.+|+.|++++|.++.+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|.+..+|.. ++.+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 346778899999999999998865 55555 999999999999998 5789999999999999999999854 4999999
Q ss_pred ceeeecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhH----hccCCCCCcEEE
Q 039831 422 MHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSK----SLCELHKLECLK 497 (545)
Q Consensus 422 ~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~ 497 (545)
++|++++|.+. .+ .. +..+..+++|+.|++++|. ...++. .+..+++|+.|+
T Consensus 91 ~~L~L~~N~i~-~~----~~----------------~~~l~~l~~L~~L~l~~N~---i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 91 TELILTNNSLV-EL----GD----------------LDPLASLKSLTYLCILRNP---VTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CEEECCSCCCC-CG----GG----------------GGGGGGCTTCCEEECCSSG---GGGSTTHHHHHHHHCTTCSEET
T ss_pred CEEECCCCcCC-cc----hh----------------hHhhhcCCCCCEEEecCCC---CCCcHhHHHHHHHHCCccceeC
Confidence 99999988652 22 10 0123445556666666554 222332 255666666666
Q ss_pred eec
Q 039831 498 LVN 500 (545)
Q Consensus 498 L~~ 500 (545)
++.
T Consensus 147 ~~~ 149 (176)
T 1a9n_A 147 FQK 149 (176)
T ss_dssp TEE
T ss_pred CCc
Confidence 653
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=3.6e-11 Score=110.28 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=64.8
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChh--hhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCc
Q 039831 353 RVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSL--LCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 353 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~--i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~ 429 (545)
++++++++.++.+|..+.. +|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5666666666666665543 666666666666666543 56666666666666666655 455666666666666655
Q ss_pred cCC----CCcccCcCCcccccccccccc--CCCchhhcCCCCCCCEEEEeccc
Q 039831 430 TLP----APPKNYSSSLKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 430 ~lp----~~~~~~~~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~ 476 (545)
.+. ..+ +.+++|+.|++..+ .+..+..+..+++|+.|++++|.
T Consensus 89 ~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMF----LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSS----TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHh----cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 331 112 34444444443333 12223334445555555555544
No 127
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.22 E-value=3e-12 Score=138.45 Aligned_cols=101 Identities=14% Similarity=-0.028 Sum_probs=56.1
Q ss_pred eeEEEEEccCCCC---CC---CcCCCCceeEEEecCCCCCCCC-CCcchhhhcCCCcccEEEccCCCCC-----CCCccc
Q 039831 302 FKRCIILGNQFDF---FP---LEYSYMYLQSFLNHSSKSNHLN-PKDCEIFFKRFKYLRVLNMGSAVLD-----QFPPGL 369 (545)
Q Consensus 302 ~r~l~~~~~~~~~---~~---~~~~~~~lr~L~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i 369 (545)
++++.+..+.... +. ..++ +|+.|.+.++...... .... ..+..++.|+.|++++|.++ .++..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~--~L~~L~L~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCR--KIKTLLMEESSFSEKDGKWLH-ELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCT--TCSEEECTTCEEECCCSHHHH-HHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCC--CCCEEECccccccCcchhHHH-HHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 6666666554111 11 3456 7777777665421000 0022 34456667777777776665 223334
Q ss_pred cCCCCCCEEEccCCCCCccChhhhccccCcEEecCC
Q 039831 370 ENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPS 405 (545)
Q Consensus 370 ~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 405 (545)
.++++|++|++++|.+..+|..+.++++|+.|++++
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 556677777777766666666666666666666654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=6.7e-11 Score=108.55 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=40.4
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCc
Q 039831 353 RVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 353 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~ 429 (545)
++++++++.++.+|..+. .+|++|++++|.++.+|..+.++++|++|++++|.+..+| ..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 345555555555554432 3555555555555555555555555555555555555554 34555555555555544
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=4.4e-11 Score=109.65 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=85.6
Q ss_pred eEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEc
Q 039831 303 KRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKL 380 (545)
Q Consensus 303 r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l 380 (545)
+.+.+.++....++ .-.. +++.|.+.++. +..+++...|..+++|++|+|++|.++.+ |..++.+.+|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc---CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 34555555555555 3344 67777777766 44444312467777888888888887755 667777888888888
Q ss_pred cCCCCCccChh-hhccccCcEEecCCCCCCcc-cHhhhcccccceeeecCccCC
Q 039831 381 NIPSLKCLPSL-LCTLLNLETLEMPSSHIDQS-PEDIWMMQKLMHLNFGSITLP 432 (545)
Q Consensus 381 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~lp 432 (545)
++|.++.+|+. +.++++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88887777554 67778888888888877765 566777788888888776543
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=2.6e-11 Score=129.96 Aligned_cols=96 Identities=24% Similarity=0.309 Sum_probs=53.0
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCcc-
Q 039831 352 LRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSIT- 430 (545)
Q Consensus 352 L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~- 430 (545)
|++|+|++|.++.+|. ++.+++|++|++++|.++.+|..++++++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 5555555555555554 55555555555555555555555555555555555555555555 45555555555555542
Q ss_pred --C--CCCcccCcCCcccccccccccc
Q 039831 431 --L--PAPPKNYSSSLKNLIFTSALNP 453 (545)
Q Consensus 431 --l--p~~~~~~~~~l~~L~~L~~~~~ 453 (545)
+ |..+ +.+++|+.|++.++
T Consensus 521 ~~~~~p~~l----~~l~~L~~L~L~~N 543 (567)
T 1dce_A 521 QQSAAIQPL----VSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSSTTGGG----GGCTTCCEEECTTS
T ss_pred CCCCCcHHH----hcCCCCCEEEecCC
Confidence 2 3344 55555555554443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1e-10 Score=105.62 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=95.8
Q ss_pred eEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCCCCCEEEc
Q 039831 303 KRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLYLLKYLKL 380 (545)
Q Consensus 303 r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 380 (545)
+.+....+....++ ...+ +++.|.+.++. +..+++ ..|..+++|++|++++|.++.+|.. ++.+.+|++|++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~--~l~~L~l~~n~---l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPS--SATRLELESNK---LQSLPH-GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTTCCT--TCSEEECCSSC---CCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCccCCCCCCC--CCcEEEeCCCc---ccEeCH-HHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 34555555555555 3445 88888888876 555665 6778889999999999998877654 678899999999
Q ss_pred cCCCCCccChh-hhccccCcEEecCCCCCCcccHh-hhcccccceeeecCccCC
Q 039831 381 NIPSLKCLPSL-LCTLLNLETLEMPSSHIDQSPED-IWMMQKLMHLNFGSITLP 432 (545)
Q Consensus 381 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~lp 432 (545)
++|.++.+|.. +.++++|++|++++|.+..+|.. +..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 99988888765 57888999999999988888854 577889999999887654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1e-10 Score=107.32 Aligned_cols=103 Identities=18% Similarity=0.317 Sum_probs=61.1
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCCCCCCEEEccCCCCCccCh-hhhccccCcE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~ 400 (545)
+++.|.+.++. +..++ ..|..+++|+.|+|++|.++.++ ..+..+.+|++|+|++|.++.+|+ .+.++++|++
T Consensus 32 ~l~~L~L~~n~---i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDGNQ---FTLVP--KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TCCEEECCSSC---CCSCC--GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCc---CchhH--HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 56666665555 33332 45566666666666666666553 345666666666666666666544 3566666666
Q ss_pred EecCCCCCCcccH-hhhcccccceeeecCcc
Q 039831 401 LEMPSSHIDQSPE-DIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 401 L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 430 (545)
|++++|.+..+|. .+..+++|++|++++|.
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 6666666666653 35566666666666553
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=3.3e-11 Score=129.17 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=102.6
Q ss_pred hhhcCCCcccEEE-ccCCCCCCCCc------cccC--CCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHh
Q 039831 344 IFFKRFKYLRVLN-MGSAVLDQFPP------GLEN--LYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPED 414 (545)
Q Consensus 344 ~~~~~l~~L~~L~-L~~~~l~~lp~------~i~~--L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~ 414 (545)
..+..+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.++.+|. ++++++|++|++++|.+..+|..
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~ 481 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA 481 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchh
Confidence 5667777788777 55443322221 1111 1258888888888888886 88888888888888888888888
Q ss_pred hhcccccceeeecCcc---CCCCcccCcCCcccccccccccc--CCCc-hhhcCCCCCCCEEEEecccCc-cccchhHhc
Q 039831 415 IWMMQKLMHLNFGSIT---LPAPPKNYSSSLKNLIFTSALNP--SSCT-LDILFRLPSVRTLRISGDLSY-YQSGVSKSL 487 (545)
Q Consensus 415 ~~~L~~L~~L~l~~~~---lp~~~~~~~~~l~~L~~L~~~~~--~~~~-~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l 487 (545)
++.+++|++|++++|. +| .+ +.+++|+.|++.++ ++.. +..++.+++|+.|++++|.-. ........+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~lp-~l----~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 482 LAALRCLEVLQASDNALENVD-GV----ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GG----TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred hhcCCCCCEEECCCCCCCCCc-cc----CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence 8888888888888773 44 56 88888888877666 3333 677888888888888888611 111122334
Q ss_pred cCCCCCcEEEe
Q 039831 488 CELHKLECLKL 498 (545)
Q Consensus 488 ~~l~~L~~L~L 498 (545)
..+++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 45778888764
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=6.8e-13 Score=122.47 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=44.4
Q ss_pred hhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhccccccee
Q 039831 345 FFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHL 424 (545)
Q Consensus 345 ~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 424 (545)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|++++|.+..+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4455555555555555555544 455555555555555555555554445555555555555555554 35555555555
Q ss_pred eecCc
Q 039831 425 NFGSI 429 (545)
Q Consensus 425 ~l~~~ 429 (545)
++++|
T Consensus 121 ~l~~N 125 (198)
T 1ds9_A 121 YMSNN 125 (198)
T ss_dssp EESEE
T ss_pred ECCCC
Confidence 55444
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=3.9e-12 Score=117.32 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=109.5
Q ss_pred ccEEEccCC--CCCCCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCcccHhhhcccccceeeecCc
Q 039831 352 LRVLNMGSA--VLDQFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSPEDIWMMQKLMHLNFGSI 429 (545)
Q Consensus 352 L~~L~L~~~--~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~ 429 (545)
|+.+.+.++ .++.+|..++.+++|++|++++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 444444443 34455568999999999999999999998 899999999999999999999988899999999999988
Q ss_pred cCCC--CcccCcCCccccccccccccCCCc---hhhcCCCCCCCEEEEecccCccccchh----------HhccCCCCCc
Q 039831 430 TLPA--PPKNYSSSLKNLIFTSALNPSSCT---LDILFRLPSVRTLRISGDLSYYQSGVS----------KSLCELHKLE 494 (545)
Q Consensus 430 ~lp~--~~~~~~~~l~~L~~L~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~l~~l~~L~ 494 (545)
.+.. .+ +.+++|+.|++..+.-.. +..+..+++|+.|++.+|. .....| ..+..+++|+
T Consensus 104 ~l~~l~~~----~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 104 QIASLSGI----EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp ECCCHHHH----HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred cCCcCCcc----ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhCCCcE
Confidence 5432 45 788899998877663222 2468899999999999987 222222 3478899999
Q ss_pred EEEe
Q 039831 495 CLKL 498 (545)
Q Consensus 495 ~L~L 498 (545)
.|+-
T Consensus 178 ~Ld~ 181 (198)
T 1ds9_A 178 KLDG 181 (198)
T ss_dssp EECC
T ss_pred EECC
Confidence 9873
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.07 E-value=2.2e-10 Score=117.92 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=97.6
Q ss_pred ceeeecccHHHHHHHH-Hc--CC--CCcEEEEE--EcCCCChHHHHHHHHhcCcccccc-----cc-eeEEEEecCCCCH
Q 039831 49 DISEFERGREKFFDLL-IE--GP--SGLSVVAI--LDSSGFDKTAFAADTYNNNYVKFY-----FD-CLAWVRVSLLYDF 115 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~~~~~~~~ 115 (545)
.++||+++++++.+++ .. .. ...+.+.| +|++|+||||||+++++ ..... |+ ..+|+.+....+.
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCCH
Confidence 7999999999999998 42 11 23456666 99999999999999998 44332 22 3567877677788
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCCCh--------hhHHHHHhhC---CCCC-
Q 039831 116 GKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFHYS--------EMWSDVVELL---PDDQ- 181 (545)
Q Consensus 116 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~l~~~~---~~~~- 181 (545)
..++..++.+++.... ....+..++...+.+.+. +++++||+||++. . +.+..+...+ +..+
T Consensus 101 ~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~-l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQS-MLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH-HHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH-HhhccCcchHHHHHHHHHHHhcccCCC
Confidence 8999999999866432 123345666777777765 6799999999987 3 2333333222 2112
Q ss_pred -CCcEEEEecCChhHH
Q 039831 182 -NGSRVLILVTEPTLL 196 (545)
Q Consensus 182 -~gs~iivTtR~~~v~ 196 (545)
....+|+||+...+.
T Consensus 177 ~~~v~lI~~~~~~~~~ 192 (412)
T 1w5s_A 177 VNRIGFLLVASDVRAL 192 (412)
T ss_dssp CCBEEEEEEEEETHHH
T ss_pred CceEEEEEEeccccHH
Confidence 345588888866543
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.07 E-value=1.7e-11 Score=132.52 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=114.6
Q ss_pred CCeeEEEEEccCCCCCC-----CcCCCCceeEEEecCCCCCCCCC-CcchhhhcCCCcccEEEccCCCCCC-----CCcc
Q 039831 300 ANFKRCIILGNQFDFFP-----LEYSYMYLQSFLNHSSKSNHLNP-KDCEIFFKRFKYLRVLNMGSAVLDQ-----FPPG 368 (545)
Q Consensus 300 ~~~r~l~~~~~~~~~~~-----~~~~~~~lr~L~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~ 368 (545)
..++++.+.++...... ..++ +|++|.+.++.. +.. ..+ ..+.++++|++|++++|.++. ++..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~~--~~~~~l~-~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFK--NFKVLVLSSCEG--FSTDGLA-AIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCT--TCCEEEEESCEE--EEHHHHH-HHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCC--CCcEEeCCCcCC--CCHHHHH-HHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 46788888877654322 2567 889998887742 111 122 344578889999998888653 2222
Q ss_pred ccCCCCCCEEEccCCC--CC--ccChhhhccccCcEEecCCC-CCCcccHhhhcccccceeeecCcc----------CC-
Q 039831 369 LENLYLLKYLKLNIPS--LK--CLPSLLCTLLNLETLEMPSS-HIDQSPEDIWMMQKLMHLNFGSIT----------LP- 432 (545)
Q Consensus 369 i~~L~~L~~L~l~~~~--i~--~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~----------lp- 432 (545)
...+++|++|++++|. +. .++.-+.++++|++|++++| .+..+|..+..+++|++|+++.+. ++
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 3366788899988876 21 12222355688888888888 666677777788888888754321 00
Q ss_pred -------------------CCcccCcCCccccccccccccC--CCchhh-cCCCCCCCEEEEecccCccccchhHhccCC
Q 039831 433 -------------------APPKNYSSSLKNLIFTSALNPS--SCTLDI-LFRLPSVRTLRISGDLSYYQSGVSKSLCEL 490 (545)
Q Consensus 433 -------------------~~~~~~~~~l~~L~~L~~~~~~--~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 490 (545)
..+..++..+++|+.|++..+. ...+.. +..+++|++|++.+|. ....++.....+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhC
Confidence 0111111245566666654442 111222 4567778888887763 233333334456
Q ss_pred CCCcEEEe
Q 039831 491 HKLECLKL 498 (545)
Q Consensus 491 ~~L~~L~L 498 (545)
++|++|+|
T Consensus 338 ~~L~~L~L 345 (594)
T 2p1m_B 338 KDLRELRV 345 (594)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 77777777
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=1.1e-09 Score=98.75 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=41.8
Q ss_pred CcccEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCCccChh-hhccccCcEEecCCCCCCcccH-hhhcccccceeee
Q 039831 350 KYLRVLNMGSAVLDQFPPG-LENLYLLKYLKLNIPSLKCLPSL-LCTLLNLETLEMPSSHIDQSPE-DIWMMQKLMHLNF 426 (545)
Q Consensus 350 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l 426 (545)
++|+.|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3455555555555544332 34555555555555555555443 3555555555555555555542 2455555555555
Q ss_pred cCc
Q 039831 427 GSI 429 (545)
Q Consensus 427 ~~~ 429 (545)
++|
T Consensus 108 ~~N 110 (177)
T 2o6r_A 108 DTN 110 (177)
T ss_dssp CSS
T ss_pred cCC
Confidence 544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=7.6e-10 Score=99.64 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=66.9
Q ss_pred CcccEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCccChh-hhccccCcEEecCCCCCCcccHh-hhcccccceeee
Q 039831 350 KYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNIPSLKCLPSL-LCTLLNLETLEMPSSHIDQSPED-IWMMQKLMHLNF 426 (545)
Q Consensus 350 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 426 (545)
+.|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|.. +.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 6788888888888866 55678888888888888888888776 47888888888888888888754 888888888888
Q ss_pred cCccCC
Q 039831 427 GSITLP 432 (545)
Q Consensus 427 ~~~~lp 432 (545)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 877543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.1e-09 Score=98.04 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=73.8
Q ss_pred eEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCccChh-hhccccCcEEe
Q 039831 325 QSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNIPSLKCLPSL-LCTLLNLETLE 402 (545)
Q Consensus 325 r~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~ 402 (545)
+.+.+.++. +..++. .. .+.|++|+|++|.++.+ |..++.+.+|++|+|++|.++.+|+. +.++++|++|+
T Consensus 12 ~~l~~s~n~---l~~ip~-~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 12 TTVDCSGKS---LASVPT-GI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TEEECTTSC---CSSCCS-CC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEeCCCC---cCccCc-cC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 445555444 444443 22 36788888888888876 55678888888888888888888765 47888888888
Q ss_pred cCCCCCCcccH-hhhcccccceeeecCccCC
Q 039831 403 MPSSHIDQSPE-DIWMMQKLMHLNFGSITLP 432 (545)
Q Consensus 403 l~~~~l~~lp~-~~~~L~~L~~L~l~~~~lp 432 (545)
+++|.+..+|. .+..+++|++|++++|.+.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88888888874 4788888888888877553
No 141
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.00 E-value=6.1e-10 Score=113.54 Aligned_cols=140 Identities=15% Similarity=0.001 Sum_probs=98.7
Q ss_pred ceeeecccHHHHHHHHHc--CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc--------cceeEEEEecCCC-CHHH
Q 039831 49 DISEFERGREKFFDLLIE--GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY--------FDCLAWVRVSLLY-DFGK 117 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~~~-~~~~ 117 (545)
+++||+++++++.+++.. .....+.+.|+|++|+|||++|+++++ ..... ....+|+...... +...
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 799999999999988864 233456899999999999999999998 44222 2346677776666 8888
Q ss_pred HHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCChhh---HHH-HHhhCCCCCCCcEEEEecCCh
Q 039831 118 ILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYSEM---WSD-VVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 118 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~-l~~~~~~~~~gs~iivTtR~~ 193 (545)
++..++.++.+... .....+.......+.+.+..++.+||+||++. ... .+. +...+... .+..||+||+..
T Consensus 99 ~~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 99 VLSSLAGKLTGFSV--PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDT-LVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHCSCC--CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHH-HHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHHhccCCCEEEEECHHH-hccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 88898888843322 12334456777788888887666999999976 321 222 22222112 678999999876
Q ss_pred h
Q 039831 194 T 194 (545)
Q Consensus 194 ~ 194 (545)
.
T Consensus 175 ~ 175 (384)
T 2qby_B 175 N 175 (384)
T ss_dssp T
T ss_pred c
Confidence 4
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=2.4e-09 Score=96.35 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=92.7
Q ss_pred eEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCCCCCEEEc
Q 039831 303 KRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLYLLKYLKL 380 (545)
Q Consensus 303 r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 380 (545)
+.+...++....++ .-.. +++.|.+.++. +..+++ ..|..+++|++|+|++|.++.+|.. +..+.+|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~~--~L~~L~Ls~N~---l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPT--DKQRLWLNNNQ---ITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCCCT--TCSEEECCSSC---CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCCCcCC--CCcEEEeCCCC---ccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 45666666666666 3346 99999999888 667777 8899999999999999999999876 589999999999
Q ss_pred cCCCCCccChh-hhccccCcEEecCCCCCCcccHhhhccc
Q 039831 381 NIPSLKCLPSL-LCTLLNLETLEMPSSHIDQSPEDIWMMQ 419 (545)
Q Consensus 381 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~~~~L~ 419 (545)
++|.++.+|+. +..+++|++|++++|.+...|..+..+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 99999999886 8999999999999998887776555443
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.97 E-value=4.2e-11 Score=129.47 Aligned_cols=214 Identities=16% Similarity=0.072 Sum_probs=122.1
Q ss_pred cCCCCceeEEEecCCCCCCCCCCcchhhhc-CCCcccEEEccCC-CCCC--CCccccCCCCCCEEEccCCCCCc-----c
Q 039831 318 EYSYMYLQSFLNHSSKSNHLNPKDCEIFFK-RFKYLRVLNMGSA-VLDQ--FPPGLENLYLLKYLKLNIPSLKC-----L 388 (545)
Q Consensus 318 ~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~l~~~~i~~-----l 388 (545)
.++ +|+.|.+.++.. ..... ..+. .+++|+.|++++| .++. ++..+.++++|++|++++|.++. +
T Consensus 103 ~~~--~L~~L~L~~~~~---~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 103 SYT--WLEEIRLKRMVV---TDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HCT--TCCEEEEESCBC---CHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred hCC--CCCeEEeeCcEE---cHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 466 899999988762 22222 2333 6889999999998 4553 44555588999999999987553 3
Q ss_pred ChhhhccccCcEEecCCCCCCcc-----cHhhhcccccceeeecCccCCCCcccCcCCccccccccccccCC--------
Q 039831 389 PSLLCTLLNLETLEMPSSHIDQS-----PEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSS-------- 455 (545)
Q Consensus 389 p~~i~~L~~L~~L~l~~~~l~~l-----p~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~-------- 455 (545)
+.....+++|++|++++|. ..+ +.-+..+++|++|++++|.-..++..++..+++|+.|....+..
T Consensus 177 ~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 3333467799999999886 233 33345679999999987621111111125566666665321110
Q ss_pred CchhhcC------------------------CCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeeec--
Q 039831 456 CTLDILF------------------------RLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMVL-- 509 (545)
Q Consensus 456 ~~~~~l~------------------------~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~l-- 509 (545)
..+..+. .+++|++|++++|. -....+...+..+++|++|++++ .+.-
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~-----~~~~~~ 329 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLD-----YIEDAG 329 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEG-----GGHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcC-----ccCHHH
Confidence 0011122 34566666666665 11222334455666677777763 1110
Q ss_pred -c-CCCCCCCccEEEEec---------cCCchhhhhhhh-cccccee
Q 039831 510 -S-EYQFPPSLIQLSLSN---------TELMEDLINSEL-ETQVLQV 544 (545)
Q Consensus 510 -P-~l~~l~~L~~L~L~~---------~~l~~~~~~~l~-~~~~l~~ 544 (545)
+ ....+++|+.|+|++ +.+++..+..+. .++.|+.
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 2 223367777777733 345554444432 3555554
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=9.3e-10 Score=109.81 Aligned_cols=96 Identities=7% Similarity=0.010 Sum_probs=64.4
Q ss_pred cccccccccccc--CCCchhhcCCCCCCCEEEEecccCccccchhHhccCCCCCc-EEEeecCCCCCee-ec-c-CCCCC
Q 039831 442 LKNLIFTSALNP--SSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE-CLKLVNESKPSRM-VL-S-EYQFP 515 (545)
Q Consensus 442 l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~L-~l-P-~l~~l 515 (545)
+++|+.+++..+ ..-....|..+++|+.+.+.++- ...-..+|.++++|+ .+++. ..+ .| + .|.+|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni---~~I~~~aF~~~~~L~~~l~l~-----~~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL---KTIGQRVFSNCGRLAGTLELP-----ASVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC---CEECTTTTTTCTTCCEEEEEC-----TTCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc---ceehHHHhhCChhccEEEEEc-----ccceEEchhhhhCC
Confidence 445555554442 22222336667777777776641 222235677777787 77775 222 22 4 78889
Q ss_pred CCccEEEEeccCCchhhhhhhhccccceeC
Q 039831 516 PSLIQLSLSNTELMEDLINSELETQVLQVV 545 (545)
Q Consensus 516 ~~L~~L~L~~~~l~~~~~~~l~~~~~l~~l 545 (545)
++|+.|++++|.+...+...+.+++.|+.+
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 999999999999999999999999988764
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=6.9e-09 Score=105.76 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=102.6
Q ss_pred ceeeecccHHHHHHHHHcC----CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEecCCCCHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG----PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DCLAWVRVSLLYDFGKILEDII 123 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~ 123 (545)
+++||+++++++.+++... ....+.+.|+|++|+||||+|+++++ ...... ...+|+......+...++..++
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 7999999999999998752 22234899999999999999999998 443331 2456777777778888999999
Q ss_pred HHhCCCCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCC-ChhhHHHHHhhCCCC-C---CCcEEEEecCChhHH
Q 039831 124 KSVMPPSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFH-YSEMWSDVVELLPDD-Q---NGSRVLILVTEPTLL 196 (545)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~-~~~~~~~l~~~~~~~-~---~gs~iivTtR~~~v~ 196 (545)
..++.... ....+..+..+.+.+.+. +++.+||+|+++. .......+...+... . .+..||+||+.....
T Consensus 96 ~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 96 RSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 98865432 223455666666666664 5689999999976 234555665555331 1 477888888877544
Q ss_pred h
Q 039831 197 T 197 (545)
Q Consensus 197 ~ 197 (545)
.
T Consensus 173 ~ 173 (389)
T 1fnn_A 173 N 173 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.91 E-value=2.9e-09 Score=108.41 Aligned_cols=140 Identities=14% Similarity=0.013 Sum_probs=97.6
Q ss_pred ceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc------ceeEEEEecCCCCHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF------DCLAWVRVSLLYDFGKILE 120 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~ 120 (545)
+++||+++++++.+++... ....+.+.|+|++|+||||+|+++++ .....+ ...+|+......+...++.
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 7999999999999998542 33456889999999999999999998 443221 2356777777788889999
Q ss_pred HHHHHhCCCCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCCChh----hHHHHHhhC---CCC--CCCcEEEEe
Q 039831 121 DIIKSVMPPSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFHYSE----MWSDVVELL---PDD--QNGSRVLIL 189 (545)
Q Consensus 121 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~----~~~~l~~~~---~~~--~~gs~iivT 189 (545)
.++.+++.... ....+..+....+.+.+. +++.+||+|+++. .. ..+.+...+ ... ..+..+|.|
T Consensus 98 ~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 98 AIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF-LPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH-HHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh-hcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 99999966433 234456666777777774 5689999999987 32 223332222 111 446678888
Q ss_pred cCChh
Q 039831 190 VTEPT 194 (545)
Q Consensus 190 tR~~~ 194 (545)
|+...
T Consensus 174 t~~~~ 178 (387)
T 2v1u_A 174 TNSLG 178 (387)
T ss_dssp CSCST
T ss_pred ECCCc
Confidence 87763
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=5.9e-09 Score=93.34 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=88.0
Q ss_pred eEEEEEccCCCCCC-CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCcc-ccCCCCCCEEEc
Q 039831 303 KRCIILGNQFDFFP-LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPG-LENLYLLKYLKL 380 (545)
Q Consensus 303 r~l~~~~~~~~~~~-~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 380 (545)
+.+.+.++....++ .-.. +++.|.+.++. +..+.+ ..|..+++|++|+|++|.++.+|.. +..+++|++|+|
T Consensus 12 ~~l~~s~n~l~~ip~~~~~--~l~~L~L~~N~---i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPT--TTQVLYLYDNQ---ITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSSC---CCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccCCC--CCcEEEcCCCc---CCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45666677766666 3346 89999998887 667777 8899999999999999999988765 589999999999
Q ss_pred cCCCCCccChh-hhccccCcEEecCCCCCCcccH
Q 039831 381 NIPSLKCLPSL-LCTLLNLETLEMPSSHIDQSPE 413 (545)
Q Consensus 381 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~ 413 (545)
++|.++.+|+. +.++++|++|++++|.+.-.+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999999875 8899999999999997665443
No 148
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.90 E-value=1.9e-09 Score=108.19 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=89.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC------CHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY------DFGKILEDI 122 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~~~~~~~i 122 (545)
.|+||+++++++.+++..+ +++.|+|++|+|||||++++++ +. + .+|+++.... +...++..+
T Consensus 13 ~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLN--ER----P-GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH--HS----S-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHH--Hc----C-cEEEEeecccccccCCCHHHHHHHH
Confidence 7999999999999998753 6899999999999999999998 33 1 6777765432 566667666
Q ss_pred HHHhCCC--------------CCccccCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCCChhh---------HHHHHhhCC
Q 039831 123 IKSVMPP--------------SRVRVIIGKDYQFKKSILRDYLTN-KKYFIVLDDVFHYSEM---------WSDVVELLP 178 (545)
Q Consensus 123 ~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~---------~~~l~~~~~ 178 (545)
...+... .........+..++.+.+.+..+. ++++||+||++. ... +..+.....
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~-~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQY-LRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGG-GGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHH-HhccCccchhhHHHHHHHHHH
Confidence 6655430 000001124556667777666543 389999999977 332 233332221
Q ss_pred CCCCCcEEEEecCChh
Q 039831 179 DDQNGSRVLILVTEPT 194 (545)
Q Consensus 179 ~~~~gs~iivTtR~~~ 194 (545)
. ..+.++|+|++...
T Consensus 161 ~-~~~~~~il~g~~~~ 175 (350)
T 2qen_A 161 S-LPNLKIILTGSEVG 175 (350)
T ss_dssp H-CTTEEEEEEESSHH
T ss_pred h-cCCeEEEEECCcHH
Confidence 1 24788999988754
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.82 E-value=3e-09 Score=108.19 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=97.3
Q ss_pred ceeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEecCCCCHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF---DCLAWVRVSLLYDFGKILEDII 123 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~i~ 123 (545)
+|+||+++++++.+++... ....+.+.|+|++|+||||||+++++ .....+ ...+|+......+...++..++
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 7999999999999998742 23456899999999999999999998 554433 2466777766667778888888
Q ss_pred HHhCCCCCccccCCCCHHHHHHHHHHhcC--CceEEEEEcCCCCC-----hhhHHHHHhhCCC-CCCCcEEEEecCChhH
Q 039831 124 KSVMPPSRVRVIIGKDYQFKKSILRDYLT--NKKYFIVLDDVFHY-----SEMWSDVVELLPD-DQNGSRVLILVTEPTL 195 (545)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~-----~~~~~~l~~~~~~-~~~gs~iivTtR~~~v 195 (545)
.+++.... ....+..+..+.+.+.+. +++.+||+|+++.. ...+..+...+.. ...+..+|+||+....
T Consensus 99 ~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 99 ESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp TTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 77755432 123345666666666664 45899999999750 1233333333211 2335678888887654
Q ss_pred Hh
Q 039831 196 LT 197 (545)
Q Consensus 196 ~~ 197 (545)
..
T Consensus 176 ~~ 177 (386)
T 2qby_A 176 VD 177 (386)
T ss_dssp GG
T ss_pred Hh
Confidence 43
No 150
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.77 E-value=1.1e-08 Score=102.94 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=83.2
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCC-----CCHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLL-----YDFGKILEDII 123 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~ 123 (545)
.|+||+++++++.+ +.. +++.|+|++|+|||+|++++++ +... ..+|+.+... .+....+..+.
T Consensus 14 ~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 79999999999999 643 5899999999999999999998 4332 2578886642 34444544444
Q ss_pred HHhC-------------CC-------CCcccc-----CCCCHHHHHHHHHHhcCCceEEEEEcCCCCChh-----hH-HH
Q 039831 124 KSVM-------------PP-------SRVRVI-----IGKDYQFKKSILRDYLTNKKYFIVLDDVFHYSE-----MW-SD 172 (545)
Q Consensus 124 ~~l~-------------~~-------~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~-~~ 172 (545)
..+. .. ...... .......+.+.+.+.-+ ++++||+||++. .. +| ..
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~-~~~~~~~~~~~~ 160 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQE-LVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGG-GGGCTTCCCHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHH-hhccCchhHHHH
Confidence 4331 00 000000 12345666666665533 499999999976 21 22 22
Q ss_pred HHhhCCCCCCCcEEEEecCChh
Q 039831 173 VVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 173 l~~~~~~~~~gs~iivTtR~~~ 194 (545)
+.... +...+.++|+|+|...
T Consensus 161 l~~~~-~~~~~~~~i~~g~~~~ 181 (357)
T 2fna_A 161 LAYAY-DNLKRIKFIMSGSEMG 181 (357)
T ss_dssp HHHHH-HHCTTEEEEEEESSHH
T ss_pred HHHHH-HcCCCeEEEEEcCchH
Confidence 32221 1123688999999764
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.72 E-value=3.6e-08 Score=93.00 Aligned_cols=137 Identities=13% Similarity=0.045 Sum_probs=76.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++||+..++.+..++.... ..+++.|+|++|+||||+|+++++ .....+.... . ....... ...+......
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~~ 95 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGITA-T---PCGVCDN-CREIEQGRFV 95 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSCS-S---CCSCSHH-HHHHHTTCCS
T ss_pred HHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCC-C---CCcccHH-HHHHhccCCc
Confidence 89999999999999997653 235788999999999999999987 3322111000 0 0000000 0001000000
Q ss_pred CCCccc-cCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 129 PSRVRV-IIGKDYQFKKSILRDYL-----TNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 129 ~~~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
...... ......+... .+.+.+ .+++.+||+||++. ....++.+...+.....+..+|+||+...
T Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000000 0001112222 222222 35689999999976 24567777666655456788999987754
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.71 E-value=6.2e-08 Score=90.08 Aligned_cols=123 Identities=9% Similarity=-0.016 Sum_probs=76.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-cc-eeEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY-FD-CLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|+++.++++.+++.... .+.+.|+|++|+|||++|+++++ ..... +. ..+.+..+.......+...+....
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 89999999999999998753 33488999999999999999988 43222 22 123333333333322222111111
Q ss_pred CCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.... .-.+++.+||+||++. ....++.+...+.....+.++|+||+...
T Consensus 94 ~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 94 RTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1100 0125789999999987 23445556555544445788999987754
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=3.7e-08 Score=98.09 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=122.0
Q ss_pred CCCeeEEEEEccCCCCCC---CcCCCCceeEEEecCCCCCCCCCCcchhhhcC--------CCcccEEEccCCCCCCCC-
Q 039831 299 PANFKRCIILGNQFDFFP---LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKR--------FKYLRVLNMGSAVLDQFP- 366 (545)
Q Consensus 299 ~~~~r~l~~~~~~~~~~~---~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~--------l~~L~~L~L~~~~l~~lp- 366 (545)
..+++.|.+..+.+.... ..++ .++.+....+ .++. ..|.. +++|+.|+|.+ .++.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~--~~~~~~~~~~------~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP--NGKFYIYMAN------FVPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG--GGCCEEECTT------EECT-TTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred hccCeEEecCcceeEEecCcccccc--cccccccccc------ccCH-HHhcccccccccccCCCcEEECCc-cccchhH
Confidence 356788888888776222 2222 2222222211 2333 56666 77777777777 666654
Q ss_pred ccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCC------------------C---------CCcccHhh---
Q 039831 367 PGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSS------------------H---------IDQSPEDI--- 415 (545)
Q Consensus 367 ~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~------------------~---------l~~lp~~~--- 415 (545)
..+.++.+|+.+++++|.+..+++ .+..+.++..+....+ . ...+|..+
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 346677777777777777666644 2444445555544331 0 01111111
Q ss_pred -------------------------hcccccceeeecCc---cCCCCcccCcCCcccccccccccc-CCCchhhcCCCCC
Q 039831 416 -------------------------WMMQKLMHLNFGSI---TLPAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPS 466 (545)
Q Consensus 416 -------------------------~~L~~L~~L~l~~~---~lp~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~ 466 (545)
..+++|+.++++.| .+|... |..+++|+.+.+... ..-....|..+++
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a---F~~~~~L~~l~l~~ni~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT---FAQKKYLLKIKLPHNLKTIGQRVFSNCGR 274 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT---TTTCTTCCEEECCTTCCEECTTTTTTCTT
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh---hhCCCCCCEEECCcccceehHHHhhCChh
Confidence 13678888888875 455443 277888888876544 2223345778888
Q ss_pred CC-EEEEecccCccccchhHhccCCCCCcEEEeecCCCCCeee-cc--CCCCCCCccEEEE
Q 039831 467 VR-TLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRMV-LS--EYQFPPSLIQLSL 523 (545)
Q Consensus 467 L~-~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~-lP--~l~~l~~L~~L~L 523 (545)
|+ .+.+.+ . ....-+.+|.++++|+.|+++. +.+. ++ .|.++++|+.|..
T Consensus 275 L~~~l~l~~-~--l~~I~~~aF~~c~~L~~l~l~~----n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 275 LAGTLELPA-S--VTAIEFGAFMGCDNLRYVLATG----DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEEEECT-T--CCEECTTTTTTCTTEEEEEECS----SCCCEECTTTTCTTCCCCEEEC
T ss_pred ccEEEEEcc-c--ceEEchhhhhCCccCCEEEeCC----CccCccchhhhcCCcchhhhcc
Confidence 98 999987 3 2333347789999999999963 3332 23 7888999998863
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=1.8e-07 Score=95.64 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=107.3
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCccCh-hhhccccCcEE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETL 401 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L 401 (545)
+|+++.+-. . +..+.. ..|..+++|+.+++.+|.++.+|.......+|+.+.+..+ ++.++. .+.++.+|+.+
T Consensus 158 ~L~~i~lp~-~---l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-T---LEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-T---CCEECS-STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-C---ccEehH-HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 455554432 1 333444 5666666666666666666665544333566666666543 555543 35566666666
Q ss_pred ecCCCCCCccc-HhhhcccccceeeecCc--cCCC-CcccCcCCccccccccccccCC-------CchhhcCCCCCCCEE
Q 039831 402 EMPSSHIDQSP-EDIWMMQKLMHLNFGSI--TLPA-PPKNYSSSLKNLIFTSALNPSS-------CTLDILFRLPSVRTL 470 (545)
Q Consensus 402 ~l~~~~l~~lp-~~~~~L~~L~~L~l~~~--~lp~-~~~~~~~~l~~L~~L~~~~~~~-------~~~~~l~~l~~L~~L 470 (545)
++..+ +..++ ..|.. .+|+.+.+..+ .++. .+ ..+++|+.+.+..... .....|..+++|+.+
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF----~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAF----YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTT----TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred ecCCC-ccCcccccccc-CCccEEEeCCCccEEChhHh----hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 66653 45554 33444 55666666432 3332 23 5566666665433211 122335566666666
Q ss_pred EEecccCccccchhHhccCCCCCcEEEeecCCCCCee-ec-c-CCCCCCCccEEEEeccCCchhhhhhhhcc
Q 039831 471 RISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRM-VL-S-EYQFPPSLIQLSLSNTELMEDLINSELET 539 (545)
Q Consensus 471 ~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L-~l-P-~l~~l~~L~~L~L~~~~l~~~~~~~l~~~ 539 (545)
.+.+. ....-..+|.++++|+.+.|.. .+ .+ + .|.++ +|+.|++++|.+...+...+.++
T Consensus 306 ~l~~~---i~~I~~~aF~~c~~L~~l~lp~-----~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 306 EIPES---IRILGQGLLGGNRKVTQLTIPA-----NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CCCTT---CCEECTTTTTTCCSCCEEEECT-----TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred EeCCc---eEEEhhhhhcCCCCccEEEECc-----cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 66532 1122224566667777777742 22 22 3 67778 88888888888777665555554
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5.1e-08 Score=97.76 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCCCcchhhhcCCCcccEEEccC-CCCCCCC-ccccCCCCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCcccH
Q 039831 337 LNPKDCEIFFKRFKYLRVLNMGS-AVLDQFP-PGLENLYLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSPE 413 (545)
Q Consensus 337 ~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp-~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~ 413 (545)
+..++ . +..+++|+.|+|++ |.++.+| ..+++|.+|++|+|++|.++.+|+ .+.+|++|++|+|++|.+..+|.
T Consensus 21 l~~ip--~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 21 LDSLH--H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CTTTT--T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCccC--C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 45543 5 88889999999996 8899776 568899999999999999998865 57899999999999999999985
Q ss_pred hhhcccccceeeecCccCC
Q 039831 414 DIWMMQKLMHLNFGSITLP 432 (545)
Q Consensus 414 ~~~~L~~L~~L~l~~~~lp 432 (545)
.+....+|+.|++.+|.+.
T Consensus 98 ~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCCCCEEECCSSCCC
T ss_pred HHcccCCceEEEeeCCCcc
Confidence 4444334999999887654
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=2e-09 Score=109.19 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=19.7
Q ss_pred cCCCCCCCEEEEecccCc--cccchhHhccCCCCCcEEEeec
Q 039831 461 LFRLPSVRTLRISGDLSY--YQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 461 l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
+...++|+.|++++|... ....+...+...++|++|+|++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 334455666666665511 1123344444555566666654
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=2.5e-07 Score=94.61 Aligned_cols=203 Identities=12% Similarity=0.099 Sum_probs=137.5
Q ss_pred ceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCCCCCCEEEccCCCCCccChhhhccccCcEE
Q 039831 323 YLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETL 401 (545)
Q Consensus 323 ~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 401 (545)
+|+++.+-.+ +..+.. ..|... .|+.+.+.. .++.++ ..+.++.+|+.+++.+|.++.+|...-...+|+.+
T Consensus 136 ~L~~i~l~~~----i~~I~~-~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 136 QIAKVVLNEG----LKSIGD-MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCSEEECCTT----CCEECT-TTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CccEEEeCCC----ccEECH-HhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 5666664332 334444 666664 588888875 566553 55778888999999888888888765556888888
Q ss_pred ecCCCCCCccc-HhhhcccccceeeecCc--cCCCCcccCcCCcccccccccccc-CCCchhhcCCCCCCCEEEEecccC
Q 039831 402 EMPSSHIDQSP-EDIWMMQKLMHLNFGSI--TLPAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPSVRTLRISGDLS 477 (545)
Q Consensus 402 ~l~~~~l~~lp-~~~~~L~~L~~L~l~~~--~lp~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 477 (545)
.+..+ +..++ ..|..+++|+.+.+..+ .++... |.. .+|+.+.+.+. ..-....|..+++|+.+.+.++..
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~a---F~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEA---FRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTT---TTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCCCccCccccc---ccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccc
Confidence 88754 77776 67888888998888654 444433 133 66777765332 222344577888999999987651
Q ss_pred c--cc-cchhHhccCCCCCcEEEeecCCCCCeee-cc--CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 478 Y--YQ-SGVSKSLCELHKLECLKLVNESKPSRMV-LS--EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 478 ~--~~-~~~~~~l~~l~~L~~L~L~~~~~~~~L~-lP--~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
. .. ..-..+|.++++|+.+.|. +.+. |+ .|.+|.+|+.|.|.++ +...+...+.++ .|+.
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~-----~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIP-----ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCC-----TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred cCCcccEECHHHhhCCccCCeEEeC-----CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 1 11 2334678899999999996 2232 24 7888999999999554 766677777777 6654
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=7.1e-08 Score=96.70 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=54.1
Q ss_pred ceeEEEecC-CCCCCCCCCcchhhhcCCCcccEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCccChhhhccccCcE
Q 039831 323 YLQSFLNHS-SKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQF-PPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLET 400 (545)
Q Consensus 323 ~lr~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~ 400 (545)
+|+.|.+.+ +. +..+++ ..|..+++|+.|+|++|.|+.+ |..+++|++|++|+|++|.++.+|+.+.....|+.
T Consensus 32 ~L~~L~l~~~n~---l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQQH---LQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107 (347)
T ss_dssp CCSEEECCSCSS---CCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred CeeEEEccCCCC---CCCcCh-hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceE
Confidence 566676664 44 455555 6677777777777777777755 34566777777777777777777665433334777
Q ss_pred EecCCCCCCc
Q 039831 401 LEMPSSHIDQ 410 (545)
Q Consensus 401 L~l~~~~l~~ 410 (545)
|++.+|.+.-
T Consensus 108 l~l~~N~~~c 117 (347)
T 2ifg_A 108 LVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCCC
T ss_pred EEeeCCCccC
Confidence 7777775543
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=2e-07 Score=92.29 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=74.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-cc-eeEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY-FD-CLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|++..++.+.+++..+. .+.+.|+|++|+|||++|+++++ .+... +. ..+++..+....... .+.++..+
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~ 96 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV-VRNQIKHF 96 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred HHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH-HHHHHHHH
Confidence 89999999999999998754 33388999999999999999998 43221 21 233343332222221 11222211
Q ss_pred CCCCCccccCCCCHHHHHHHHHHhc-CCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDYL-TNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.... ..+ .+++.++|+||++. ....++.+...+.....++++|+||+...
T Consensus 97 ~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 97 AQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred Hhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 1000 011 35689999999986 23445545544433345788888887643
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=1.4e-08 Score=102.93 Aligned_cols=165 Identities=18% Similarity=0.088 Sum_probs=75.4
Q ss_pred CcccEEEccCCCCCCC-Cccc----c-CCCCCCEEEccCCCCCcc--ChhhhccccCcEEecCCCCCCccc-Hhh-----
Q 039831 350 KYLRVLNMGSAVLDQF-PPGL----E-NLYLLKYLKLNIPSLKCL--PSLLCTLLNLETLEMPSSHIDQSP-EDI----- 415 (545)
Q Consensus 350 ~~L~~L~L~~~~l~~l-p~~i----~-~L~~L~~L~l~~~~i~~l--p~~i~~L~~L~~L~l~~~~l~~lp-~~~----- 415 (545)
+.|+.|+|++|.++.. ...+ . ...+|++|+|++|.++.- ..-...+.+|++|++++|.++..+ ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4455666666665521 1111 1 124566666666655421 111223455666666666554432 222
Q ss_pred hcccccceeeecCccCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccC--ccccchhHhccCCCCC
Q 039831 416 WMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLS--YYQSGVSKSLCELHKL 493 (545)
Q Consensus 416 ~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L 493 (545)
...++|++|++++|.+...- ... ....+...++|++|++++|.- .....+...+...++|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~---------~~~---------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAG---------VAV---------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp STTCCCCEEECCSSCCHHHH---------HHH---------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred hcCCccceeeCCCCCCChHH---------HHH---------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 12345666666555432100 000 012233445566666666541 1122334555555666
Q ss_pred cEEEeecCCCCCeeec------c-CCCCCCCccEEEEeccCCchhhhhhh
Q 039831 494 ECLKLVNESKPSRMVL------S-EYQFPPSLIQLSLSNTELMEDLINSE 536 (545)
Q Consensus 494 ~~L~L~~~~~~~~L~l------P-~l~~l~~L~~L~L~~~~l~~~~~~~l 536 (545)
+.|+|++ +.+.- + .+...++|++|+|++|.+.......+
T Consensus 214 ~~L~Ls~----N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 214 QELNVAY----NGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CEEECCS----SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CeEECCC----CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 6666664 22211 1 23334566666666666665544443
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.42 E-value=4.6e-07 Score=88.79 Aligned_cols=111 Identities=9% Similarity=0.056 Sum_probs=76.2
Q ss_pred eeeecccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-----cc--eeEEEEecCCCCHHHHHH
Q 039831 50 ISEFERGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY-----FD--CLAWVRVSLLYDFGKILE 120 (545)
Q Consensus 50 ~vGr~~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~--~~~wv~~~~~~~~~~~~~ 120 (545)
+.||++++++|...|... +...+.+.|+|++|.|||++|++|++ +.... .. ..+.|......+...++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 789999999999888652 33567789999999999999999998 44321 11 244566556678889999
Q ss_pred HHHHHhCCCCCccccCCCCHHHHHHHHHHh--cCCceEEEEEcCCCC
Q 039831 121 DIIKSVMPPSRVRVIIGKDYQFKKSILRDY--LTNKKYFIVLDDVFH 165 (545)
Q Consensus 121 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~ 165 (545)
.|+.++.+... ......+.+...+.+. -.+++++++||++..
T Consensus 100 ~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 100 KIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 99999976532 1222334444333332 245789999999987
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=4.1e-07 Score=91.43 Aligned_cols=170 Identities=18% Similarity=0.137 Sum_probs=93.9
Q ss_pred hcCCCcccEEEccCCCCC----------CCCccccCCCCCCEEEccCCCCCccChhhhccccCcEEecCCCCCCccc-Hh
Q 039831 346 FKRFKYLRVLNMGSAVLD----------QFPPGLENLYLLKYLKLNIPSLKCLPSLLCTLLNLETLEMPSSHIDQSP-ED 414 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~----------~lp~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~ 414 (545)
..++++|+.|.+...... .++..+..+++|+.|++++|.-..+|. + .+++|++|++..|.+..-. ..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 345667777766543321 123334556777777777763224444 3 3677888888766543221 22
Q ss_pred hh--cccccceeeecCc-cCCCCcccCcCCccccccccccccCCCchhhcCCCCCCCEEEEecccCccccchhHhc---c
Q 039831 415 IW--MMQKLMHLNFGSI-TLPAPPKNYSSSLKNLIFTSALNPSSCTLDILFRLPSVRTLRISGDLSYYQSGVSKSL---C 488 (545)
Q Consensus 415 ~~--~L~~L~~L~l~~~-~lp~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l---~ 488 (545)
+. .+|+|++|+++.+ ..+.+- .....+..+ + ....+++|+.|.+.+|. ........+ .
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~----~~~~~l~~~---------l-~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~ 276 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFD----GDMNVFRPL---------F-SKDRFPNLKWLGIVDAE--EQNVVVEMFLESD 276 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCC----SCGGGTGGG---------S-CTTTCTTCCEEEEESCT--THHHHHHHHHHCS
T ss_pred HHHccCCCCcEEEEeccccccccc----hhHHHHHHH---------H-hcCCCCCcCEEeCCCCC--CchHHHHHHHhCc
Confidence 33 6777888877421 111111 111111111 0 01357889999998876 222222222 3
Q ss_pred CCCCCcEEEeecCCCCCeeec------c-CCCCCCCccEEEEeccCCchhhhhhhh
Q 039831 489 ELHKLECLKLVNESKPSRMVL------S-EYQFPPSLIQLSLSNTELMEDLINSEL 537 (545)
Q Consensus 489 ~l~~L~~L~L~~~~~~~~L~l------P-~l~~l~~L~~L~L~~~~l~~~~~~~l~ 537 (545)
.+++|++|+|++ +.+.- + .+..+++|+.|+|++|.++......+.
T Consensus 277 ~~~~L~~LdLs~----n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 277 ILPQLETMDISA----GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp SGGGCSEEECCS----SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred cCCCCCEEECCC----CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 578899999985 33321 2 334578899999999988876655543
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=7.5e-07 Score=88.21 Aligned_cols=120 Identities=11% Similarity=0.025 Sum_probs=73.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc-c-eeEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF-D-CLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|+++.++.+.+++..+. .+.+.|+|++|+||||+|+++++ .+.... . ..+.+..+....... ....+
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 97 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGINV-IREKV--- 97 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHHT-THHHH---
T ss_pred HhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchHH-HHHHH---
Confidence 89999999999999998753 33488999999999999999998 432221 1 122333221111100 00111
Q ss_pred CCCCCccccCCCCHHHHHHHHHHh--c-CCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDY--L-TNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
...... + .+++.++|+|+++. ....++.+...+.....++++|+||....
T Consensus 98 ------------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 98 ------------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp ------------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ------------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 111111 1 25688999999986 23556666655544445788999887653
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=9.1e-07 Score=79.95 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=38.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++||++.++++.+.+.... .+.+.|+|++|+|||++|+++++
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 79999999999999987643 45678999999999999999988
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.06 E-value=7.1e-06 Score=70.94 Aligned_cols=46 Identities=9% Similarity=-0.083 Sum_probs=35.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+++++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999888542212234679999999999999999984
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.04 E-value=9.3e-06 Score=81.95 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=73.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++|++..++.+.+.+..+. ....+.|+|++|+||||+|+++++.......+.. ..+.. .. ....+...-..
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~---~~-~~~~~~~~~~~ 88 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CD-NCREIEQGRFV 88 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSS---SH-HHHHHHTSCCS
T ss_pred hccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcc---cH-HHHHHhccCCC
Confidence 79999999999999997653 2346789999999999999999873211111100 00000 00 00111100000
Q ss_pred CCC----ccccCCCCHHHHHHHHHHh-cCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 129 PSR----VRVIIGKDYQFKKSILRDY-LTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 129 ~~~----~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.-. .......+..++.+.+... ..+++.++|+||+.. ....++.+...+.....+..+|++|....
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000 0001112233333222211 135678999999976 24556666655544444677888876543
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.00 E-value=4.2e-06 Score=82.40 Aligned_cols=120 Identities=9% Similarity=0.007 Sum_probs=74.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-ccccc-eeEEEEecCCCCHHHHHHHHHHHh
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYV-KFYFD-CLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
+++|++..++.+.+++..+. .+.+.++|++|+|||++|+++++ .+ ...+. ..+.+..+.....
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTCT-----------
T ss_pred HHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccCh-----------
Confidence 89999999999998887643 33488999999999999999988 33 11111 1223333221110
Q ss_pred CCCCCccccCCCCHHHHHHHHHHh--c-CCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 127 MPPSRVRVIIGKDYQFKKSILRDY--L-TNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
....+........ + .+++.++|+|++.. .....+.+...+.....+.++|+||....
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 0111111111111 1 25688999999976 23455666666655556788888887644
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=3.9e-06 Score=75.42 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=37.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++||+++++.+.+.+.... .+.+.|+|++|+|||++|+++++
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 79999999999999997643 45678999999999999999988
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.94 E-value=4.8e-06 Score=80.80 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.+... -...+-+.|+|++|+|||++|+++++
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 8999999999998887431 12345688999999999999999998
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=4.7e-06 Score=83.69 Aligned_cols=159 Identities=12% Similarity=0.009 Sum_probs=91.2
Q ss_pred cCCCCceeEEEecCCCCC-----CC-CCCcchhhhcCCCcccEEEccCCCCCCCCccccCCCCCCEEEccCCCCCcc-Ch
Q 039831 318 EYSYMYLQSFLNHSSKSN-----HL-NPKDCEIFFKRFKYLRVLNMGSAVLDQFPPGLENLYLLKYLKLNIPSLKCL-PS 390 (545)
Q Consensus 318 ~~~~~~lr~L~~~~~~~~-----~~-~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~i~~l-p~ 390 (545)
.++ +|++|.+.+.... +. ...+. ..+..+++|+.|.+++|.-..+|. + .+.+|+.|++..|.+..- ..
T Consensus 137 ~l~--~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 137 KFA--HFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHT--TCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hcc--hhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 345 8888887543211 01 11234 667889999999999884234554 4 388999999998876421 12
Q ss_pred hhh--ccccCcEEecCCC--C------CCcccHhh--hcccccceeeecCccCCCCcccCcCCccccccccccccCCCch
Q 039831 391 LLC--TLLNLETLEMPSS--H------IDQSPEDI--WMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSALNPSSCTL 458 (545)
Q Consensus 391 ~i~--~L~~L~~L~l~~~--~------l~~lp~~~--~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~~~~~~~~~ 458 (545)
.++ .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.+.... . ..+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~----~---------------~~l 272 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV----V---------------EMF 272 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH----H---------------HHH
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH----H---------------HHH
Confidence 333 7899999998632 1 22222222 24677777777655432111 0 001
Q ss_pred hhcCCCCCCCEEEEecccCc--cccchhHhccCCCCCcEEEeec
Q 039831 459 DILFRLPSVRTLRISGDLSY--YQSGVSKSLCELHKLECLKLVN 500 (545)
Q Consensus 459 ~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~L~~ 500 (545)
.+...+++|++|+++.|.-. ....++..+..+++|+.|+|++
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 11124567777777766511 1123444445667778887774
No 171
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.90 E-value=1.1e-05 Score=79.21 Aligned_cols=124 Identities=11% Similarity=0.121 Sum_probs=70.3
Q ss_pred ceeeecccHHHHHHHHHcC-------------CCCcEEEEEEcCCCChHHHHHHHHhcCccccc--ccceeEEEEecCCC
Q 039831 49 DISEFERGREKFFDLLIEG-------------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKF--YFDCLAWVRVSLLY 113 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~ 113 (545)
+++|.++.++.|.+.+... ......+.|+|++|+|||++|+++++ .+.. .....-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~~~~~~~~~~~~~~~~- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG--LLHRLGYVRKGHLVSVTRD- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH--HHHHTTSSSSCCEEEECGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCcCCCcEEEEcHH-
Confidence 5899999999988776421 22345688999999999999998887 3322 1111123333211
Q ss_pred CHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC----------ChhhHHHHHhhCCCCCCC
Q 039831 114 DFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH----------YSEMWSDVVELLPDDQNG 183 (545)
Q Consensus 114 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~----------~~~~~~~l~~~~~~~~~g 183 (545)
.+... ............+... +..+|++|++.. .......+...+.....+
T Consensus 109 -----------~l~~~-----~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 109 -----------DLVGQ-----YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp -----------GTCCS-----STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred -----------Hhhhh-----cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 11110 0111122223333332 335999999973 034445555555444456
Q ss_pred cEEEEecCChh
Q 039831 184 SRVLILVTEPT 194 (545)
Q Consensus 184 s~iivTtR~~~ 194 (545)
..||.||....
T Consensus 170 ~~~i~~~~~~~ 180 (309)
T 3syl_A 170 LVVILAGYADR 180 (309)
T ss_dssp CEEEEEECHHH
T ss_pred EEEEEeCChHH
Confidence 78888886543
No 172
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.89 E-value=1.8e-05 Score=78.26 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=72.6
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
+++|.++.++.+.+++..+. ...++.+.|++|+|||++|+++++ .... ..+.+..+. .... .++..+..+..
T Consensus 27 ~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~~---~~~~i~~~~-~~~~-~i~~~~~~~~~ 98 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVNA---DMMFVNGSD-CKID-FVRGPLTNFAS 98 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTTE---EEEEEETTT-CCHH-HHHTHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCC---CEEEEcccc-cCHH-HHHHHHHHHHh
Confidence 89999999999999998653 335677889999999999999998 4422 233444322 1121 11111111100
Q ss_pred CCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-C-hhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 129 PSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-Y-SEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~-~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
.. ...+++.++|+|++.. . .+..+.+...+.....+.++|+||....
T Consensus 99 ~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 99 AA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp BC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred hc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 00 0124788999999988 2 2244444444432234578888887654
No 173
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.85 E-value=7.5e-06 Score=70.61 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=33.9
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 6899999999988887542111234779999999999999999983
No 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=1.8e-05 Score=75.46 Aligned_cols=81 Identities=21% Similarity=0.106 Sum_probs=63.7
Q ss_pred hcCCCcccEEEccCCCCCCC---CccccCCCCCCEEEccCCCCCccChhhhccc--cCcEEecCCCCCCc-cc-------
Q 039831 346 FKRFKYLRVLNMGSAVLDQF---PPGLENLYLLKYLKLNIPSLKCLPSLLCTLL--NLETLEMPSSHIDQ-SP------- 412 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~l~~-lp------- 412 (545)
...++.|+.|+|++|.++.+ |..++.+++|++|+|++|.+..+ ..+..+. +|++|++++|.+.. +|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35688999999999998864 45667899999999999999877 3455555 89999999997653 44
Q ss_pred Hhhhcccccceeeec
Q 039831 413 EDIWMMQKLMHLNFG 427 (545)
Q Consensus 413 ~~~~~L~~L~~L~l~ 427 (545)
..+..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 247788999988753
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.82 E-value=1e-05 Score=72.62 Aligned_cols=122 Identities=11% Similarity=0.000 Sum_probs=64.6
Q ss_pred ceeee----cccHHHHHHHHHcCC-CCcEEEEEEcCCCChHHHHHHHHhcCcccc--cccceeEEEEecCCCCHHHHHHH
Q 039831 49 DISEF----ERGREKFFDLLIEGP-SGLSVVAILDSSGFDKTAFAADTYNNNYVK--FYFDCLAWVRVSLLYDFGKILED 121 (545)
Q Consensus 49 ~~vGr----~~~~~~i~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~ 121 (545)
+|++. ++.++.+.+++..-. .....+.|+|++|+||||||+++++ ... ..+ .+++++ ..++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~-~~~~~~------~~~~~~~ 81 (180)
T 3ec2_A 11 TYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGI-RGYFFD------TKDLIFR 81 (180)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCC-CCCEEE------HHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCC-eEEEEE------HHHHHHH
Confidence 56553 333444444443321 2346889999999999999999998 442 121 233443 3444444
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHH--HHHhhCCC-CCCCcEEEEecCCh
Q 039831 122 IIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWS--DVVELLPD-DQNGSRVLILVTEP 193 (545)
Q Consensus 122 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~--~l~~~~~~-~~~gs~iivTtR~~ 193 (545)
+......... . .....+. +.-+|||||++. ..+.|. .+...+.. ...|..||+||...
T Consensus 82 ~~~~~~~~~~-------~--~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 82 LKHLMDEGKD-------T--KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHTCC-------S--HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHhcCchH-------H--HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4443322211 1 2222222 456899999973 133332 22222221 12467888888654
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=4.3e-05 Score=76.31 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=72.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc--ccce-eEEEEecCCCCHHHHHHHHHHH
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKF--YFDC-LAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~-~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
+++|+++.++.+..++.... .+.+.|+|++|+||||+|+++++ .+.. .+.. ...+..+.......+ .+....
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~--~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 112 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK--ELYGPDLMKSRILELNASDERGISIV-REKVKN 112 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH--HHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHH
T ss_pred HhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH--HhCCCcccccceEEEccccccchHHH-HHHHHH
Confidence 89999999999999987653 22388999999999999999998 3321 1221 223333332222222 222221
Q ss_pred hCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 126 VMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
+..... ...... .....-.+++-++++|++.. .......+...+.......++|++|...
T Consensus 113 ~~~~~~---~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 113 FARLTV---SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HHHSCC---CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred Hhhhcc---cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 111100 000000 00111124567999999876 2334455554443333457788877554
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=3e-05 Score=77.62 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=35.5
Q ss_pred ceeeecccHHHHHHHH-HcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLL-IEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.+++
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 8999999999888887 4432 223 89999999999999998877
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.71 E-value=9.8e-05 Score=70.98 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=35.0
Q ss_pred ceeeecccHHHHHHH-------HHcC-CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDL-------LIEG-PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~-------L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|....++++... +... ....+.+.|+|++|+|||++|+++++
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 678888877777663 3221 33567888999999999999999998
No 179
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.70 E-value=0.00023 Score=70.23 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=37.0
Q ss_pred ceeeecccHHHHHHHHHc---------C-CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE---------G-PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++.+.+.+.. . ....+-|.++|++|+|||+||+++++
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 899999999999887742 1 12346788999999999999999998
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.67 E-value=3.2e-05 Score=73.79 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=35.4
Q ss_pred ceeeecccHHHHHHHHHc---CC-------CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE---GP-------SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~~-------~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+++.. .. ...+-|.|+|++|+|||++|+++++
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 789999988888776532 11 2345678999999999999999998
No 181
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=1.6e-05 Score=71.83 Aligned_cols=81 Identities=16% Similarity=0.116 Sum_probs=34.9
Q ss_pred hcCCCcccEEEccCC-CCCC-----CCccccCCCCCCEEEccCCCCCc-----cChhhhccccCcEEecCCCCCCc----
Q 039831 346 FKRFKYLRVLNMGSA-VLDQ-----FPPGLENLYLLKYLKLNIPSLKC-----LPSLLCTLLNLETLEMPSSHIDQ---- 410 (545)
Q Consensus 346 ~~~l~~L~~L~L~~~-~l~~-----lp~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~l~~---- 410 (545)
+...+.|+.|+|++| .+.. +...+...++|++|+|++|.++. +...+...++|++|+|++|.++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344444555555554 4431 22233334445555555554432 22223333445555555554433
Q ss_pred -ccHhhhcccccceeee
Q 039831 411 -SPEDIWMMQKLMHLNF 426 (545)
Q Consensus 411 -lp~~~~~L~~L~~L~l 426 (545)
+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 2333444444555555
No 182
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.67 E-value=6.4e-05 Score=68.68 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=64.8
Q ss_pred ceeeecc----cHHHHHHHHHcCCCC--cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHH
Q 039831 49 DISEFER----GREKFFDLLIEGPSG--LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDI 122 (545)
Q Consensus 49 ~~vGr~~----~~~~i~~~L~~~~~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 122 (545)
+|++... .++.+.+++...... .+.+.|+|++|+|||+||+++++ ........++|+.+. .+...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~ 97 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFREL 97 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHH
Confidence 6666443 445556666543221 26788999999999999999998 444444455666542 344444
Q ss_pred HHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCC-hhhHHH--HHh-hCCC-CCCCcEEEEecCC
Q 039831 123 IKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHY-SEMWSD--VVE-LLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~--l~~-~~~~-~~~gs~iivTtR~ 192 (545)
...+... ........+.+ .-+||+||++.. ...|.. +.. .+.. ...+.++|+||..
T Consensus 98 ~~~~~~~---------~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 98 KHSLQDQ---------TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHC---C---------CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHhccc---------hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 3322111 12333333332 238999999651 222211 111 1111 1235678888864
No 183
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.66 E-value=4.1e-05 Score=75.68 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=37.2
Q ss_pred ceeeecccHHHHHHHHHc----------CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE----------GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.+.. .....+-|.++|++|+|||++|+++++
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 899999999999988731 112345688999999999999999998
No 184
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=1.6e-05 Score=71.80 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=60.1
Q ss_pred ceeEEEecCC-CCCC-CCCCcchhhhcCCCcccEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCc-----cCh
Q 039831 323 YLQSFLNHSS-KSNH-LNPKDCEIFFKRFKYLRVLNMGSAVLDQ-----FPPGLENLYLLKYLKLNIPSLKC-----LPS 390 (545)
Q Consensus 323 ~lr~L~~~~~-~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~i~~-----lp~ 390 (545)
.+++|.+.++ .... ....+. ..+...+.|++|+|++|.+.. +...+...++|++|+|++|.|+. +..
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 6777777665 3210 000111 344556667777777777652 23344455667777777776653 344
Q ss_pred hhhccccCcEEec--CCCCCCc-----ccHhhhcccccceeeecCcc
Q 039831 391 LLCTLLNLETLEM--PSSHIDQ-----SPEDIWMMQKLMHLNFGSIT 430 (545)
Q Consensus 391 ~i~~L~~L~~L~l--~~~~l~~-----lp~~~~~L~~L~~L~l~~~~ 430 (545)
.+...++|++|++ ++|.++. +...+...++|++|++++|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5555666777777 5565543 33445555667777766553
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.63 E-value=2.7e-05 Score=76.91 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcC---CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|++..++++..++... ......|.|+|++|+|||++|+++++
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 8999999999998888531 12345688999999999999999998
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.62 E-value=5.2e-05 Score=78.25 Aligned_cols=122 Identities=15% Similarity=0.222 Sum_probs=68.4
Q ss_pred cee-eeccc--HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccce--eEEEEecCCCCHHHHHHHHH
Q 039831 49 DIS-EFERG--REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDC--LAWVRVSLLYDFGKILEDII 123 (545)
Q Consensus 49 ~~v-Gr~~~--~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~ 123 (545)
+|+ |.... ...+......... ...+.|+|++|+||||||+++++ .....|.. .++++.. .+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHH
Confidence 677 64333 2333333333322 56788999999999999999998 55444422 3455432 2334444
Q ss_pred HHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCCh----hhHHHHHhhCCC-CCCCcEEEEecCCh
Q 039831 124 KSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYS----EMWSDVVELLPD-DQNGSRVLILVTEP 193 (545)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~~l~~~~~~-~~~gs~iivTtR~~ 193 (545)
..+... .. ..+.+.++.+..+|++||+.. . ...+.+...+.. ...|..||+||...
T Consensus 177 ~~~~~~---------~~----~~~~~~~~~~~~vL~IDEi~~-l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 177 DSMKEG---------KL----NEFREKYRKKVDILLIDDVQF-LIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHTT---------CH----HHHHHHHTTTCSEEEEECGGG-GSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHcc---------cH----HHHHHHhcCCCCEEEEeCccc-ccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 444221 11 123334443677999999975 2 222333333221 23477899998763
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=4.2e-05 Score=67.80 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=51.3
Q ss_pred cccEEEccCCCCC-CCCccccCCCCCCEEEccCCC-CCcc-Chhhhcc----ccCcEEecCCC-CCCccc-Hhhhccccc
Q 039831 351 YLRVLNMGSAVLD-QFPPGLENLYLLKYLKLNIPS-LKCL-PSLLCTL----LNLETLEMPSS-HIDQSP-EDIWMMQKL 421 (545)
Q Consensus 351 ~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~-i~~l-p~~i~~L----~~L~~L~l~~~-~l~~lp-~~~~~L~~L 421 (545)
.|+.||+++|.++ .-...+..+++|++|+|++|. ++.- -..++.+ ++|++|+|++| +++.-- ..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 5777888887766 224556777788888888775 5421 1234443 36888888887 566533 446677778
Q ss_pred ceeeecCc
Q 039831 422 MHLNFGSI 429 (545)
Q Consensus 422 ~~L~l~~~ 429 (545)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 88887766
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.59 E-value=0.00045 Score=69.33 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=35.8
Q ss_pred ceeeecccHHHH---HHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKF---FDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i---~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|++..++.+ ...+.......+.+.|+|++|+|||++|+++++
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 899999987764 444444433346788999999999999999998
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.00011 Score=73.78 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHc----------CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE----------GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.+.. .....+-|.|+|++|+|||++|+++++
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 899999999999888753 112356788999999999999999998
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.56 E-value=0.00018 Score=70.28 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=37.4
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.+... -...+.|.|+|++|+|||++|+++++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 8999999999998887531 12346788999999999999999998
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.00023 Score=75.10 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=38.9
Q ss_pred ceeeecccHHHHHHHHHcCC---------------CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGP---------------SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|++..++++.+++.... ...+.+.|+|++|+||||+|+++++
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999997510 1346889999999999999999998
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.49 E-value=0.00034 Score=72.19 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHc----C------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE----G------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++.+.+.+.. . ....+-|.++|++|+|||+||+++++
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 899999999999887731 0 12346788999999999999999998
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.49 E-value=0.00019 Score=71.22 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=38.6
Q ss_pred ceeeecccHHHHHHHHHcC---CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|++..++++..++... ......|.|+|++|+|||++|+++++
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 8999999999999998652 23445688999999999999999988
No 194
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00071 Score=66.00 Aligned_cols=119 Identities=4% Similarity=-0.083 Sum_probs=70.2
Q ss_pred eecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCc-ccccccceeEEEEecC-CCCHHHHHHHHHHHhCCC
Q 039831 52 EFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNN-YVKFYFDCLAWVRVSL-LYDFGKILEDIIKSVMPP 129 (545)
Q Consensus 52 Gr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 129 (545)
|-++.++.+.+.+..+. .....++|+.|.||||+|+.+++.. ..+..+....++..++ ...+.. .+++...+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhc
Confidence 44566777888877654 6788999999999999999998721 1111122334444332 222222 22333333221
Q ss_pred CCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 130 SRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
. ..+++-++|+|++.. .....+.+...+......+.+|++|.++
T Consensus 78 p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 78 P--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp C--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred c--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 1 124567899999986 2456666766665444577888887654
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.44 E-value=0.00034 Score=70.95 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=37.1
Q ss_pred ceeeecccHHHHHHHHHcC----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+...+... ....+-|.|+|.+|+|||++|+++++
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999887321 11245788999999999999999988
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.00028 Score=68.60 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=37.2
Q ss_pred ceeeecccHHHHHHHHHcC----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++.+.+.+... ....+.+.|+|++|+|||++|+++++
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 8999999999998887431 11245788999999999999999998
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.0002 Score=71.22 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=36.7
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+...+..+. .+-+.++|+.|+||||+|+.+++
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 78999888999888887653 33388999999999999999988
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.39 E-value=0.0002 Score=73.85 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=37.3
Q ss_pred ceeeecccH---HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGR---EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~---~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..+ ..+...+..+. ...+.|+|++|+||||+|+.+++
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 899998888 77888787654 46788999999999999999998
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=0.00012 Score=69.91 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=51.2
Q ss_pred cCCCCCCEEEccCCCCCcc---ChhhhccccCcEEecCCCCCCcccHhhhccc--ccceeeecCccCC
Q 039831 370 ENLYLLKYLKLNIPSLKCL---PSLLCTLLNLETLEMPSSHIDQSPEDIWMMQ--KLMHLNFGSITLP 432 (545)
Q Consensus 370 ~~L~~L~~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~~~l~~lp~~~~~L~--~L~~L~l~~~~lp 432 (545)
.++++|+.|+|++|.+..+ |..+..+++|++|+|++|.+..+. .+..+. +|+.|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 4688999999999998765 456789999999999999988874 355555 8999999988654
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.37 E-value=0.00023 Score=71.26 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=36.6
Q ss_pred ceeeecccHHHHHHHHHcC----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++.|.+.+... ....+-|.++|++|+|||++|+++++
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 8999999999999887321 11234578999999999999999999
No 201
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.36 E-value=0.00014 Score=71.85 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=63.0
Q ss_pred cee-eecc--cHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH
Q 039831 49 DIS-EFER--GREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 49 ~~v-Gr~~--~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
+|+ |... ....+...+..+......+.|+|++|+||||||+++++ .....-...++++. ..+...+...
T Consensus 12 ~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~------~~~~~~~~~~ 83 (324)
T 1l8q_A 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSA------DDFAQAMVEH 83 (324)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEH------HHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEH------HHHHHHHHHH
Confidence 666 4322 23344454444332356788999999999999999998 44221112345542 2233333333
Q ss_pred hCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCCChh----hHHHHHhhCCC-CCCCcEEEEecCC
Q 039831 126 VMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFHYSE----MWSDVVELLPD-DQNGSRVLILVTE 192 (545)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~l~~~~~~-~~~gs~iivTtR~ 192 (545)
+... ...... +.+ .+..+|++||+.. .. ..+.+...+.. ...|.+||+||..
T Consensus 84 ~~~~---------~~~~~~----~~~-~~~~vL~iDEi~~-l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 84 LKKG---------TINEFR----NMY-KSVDLLLLDDVQF-LSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHT---------CHHHHH----HHH-HTCSEEEEECGGG-GTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHcC---------cHHHHH----HHh-cCCCEEEEcCccc-ccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3211 111112 222 2356999999976 32 22333333221 1235678888764
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.36 E-value=0.001 Score=65.96 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc---------------------ceeEEEEecCCC
Q 039831 55 RGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF---------------------DCLAWVRVSLLY 113 (545)
Q Consensus 55 ~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~~wv~~~~~~ 113 (545)
+..+.+.+.+..+. -...+.++|+.|+|||++|+.+++. +.... ....++....
T Consensus 9 ~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-- 83 (334)
T 1a5t_A 9 PDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY--LLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK-- 83 (334)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT--
T ss_pred HHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH--HhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc--
Confidence 44556666665543 3456889999999999999998772 21110 1112221110
Q ss_pred CHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc-----CCceEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEE
Q 039831 114 DFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL-----TNKKYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVL 187 (545)
Q Consensus 114 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~ii 187 (545)
. ......+++.+.+ +.+ .+++-++|+|++.. .....+.+...+.....++.+|
T Consensus 84 -----------------~---~~~~~i~~ir~l~-~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 84 -----------------G---KNTLGVDAVREVT-EKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp -----------------T---CSSBCHHHHHHHH-HHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred -----------------c---CCCCCHHHHHHHH-HHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 0 0112233333222 222 25678899999987 2355566666665444567888
Q ss_pred EecCChh
Q 039831 188 ILVTEPT 194 (545)
Q Consensus 188 vTtR~~~ 194 (545)
++|.+.+
T Consensus 143 l~t~~~~ 149 (334)
T 1a5t_A 143 LATREPE 149 (334)
T ss_dssp EEESCGG
T ss_pred EEeCChH
Confidence 8877653
No 203
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=5.9e-05 Score=65.40 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-..++|+|..|+|||||++++++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.35 E-value=0.00061 Score=66.60 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=43.5
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL 111 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 111 (545)
.++|.+..++.+...+... ......+.++|++|+|||++|+.+++ .....-...+.+..+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence 5889999999988888652 12246899999999999999999998 4322222344555443
No 205
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.34 E-value=0.00028 Score=67.40 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=34.1
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 6899999999988777542112245779999999999999999983
No 206
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.20 E-value=0.00051 Score=67.10 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=36.4
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+++++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 578999999999888865222234577999999999999999998
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.18 E-value=0.0012 Score=60.68 Aligned_cols=89 Identities=11% Similarity=0.021 Sum_probs=53.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC--------ccccCCCCHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR--------VRVIIGKDYQF 142 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~~ 142 (545)
-.++.|+|.+|+||||||..++. . .-..++|++....++...+.. +...++.... .......+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999987 1 123577888766556554443 3333322100 00011112234
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC
Q 039831 143 KKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 143 ~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 45555555544578999999865
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.15 E-value=0.00041 Score=72.17 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=37.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+++++.+...+.... ..-+.++|.+|+|||++|+.+++
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 79999999999999997643 23457999999999999999988
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00054 Score=65.08 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=34.4
Q ss_pred ceeeecccHHHHHHHHHc---C-------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE---G-------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++++.+.+.. . ....+-+.|+|++|+||||+|+++++
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 899999888887765431 1 01133478999999999999999998
No 210
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.10 E-value=0.00012 Score=70.01 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=35.3
Q ss_pred ceeeecccHHHHHHHHHc----------CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE----------GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.+.. .....+-+.|+|++|+|||++|+++++
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 899999999998887641 111123367999999999999999998
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.10 E-value=0.0026 Score=70.33 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=37.4
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++||+++++++.+.|.... ..-+.++|.+|+|||++|+.+++
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999997653 34467999999999999999987
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.09 E-value=0.00058 Score=71.13 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=37.4
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++++.+++... -...+-|.|+|.+|+|||++|+++++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 7999999999998887532 12345688999999999999999998
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.03 E-value=0.00095 Score=69.06 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=55.7
Q ss_pred ceeeecccHHHHHHHHHc---C-------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHH
Q 039831 49 DISEFERGREKFFDLLIE---G-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKI 118 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 118 (545)
+++|.++.++++.+.... . -...+-|.|+|++|+|||+||+++++ +....| +.++.+.-...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~--- 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL--- 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC---
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH---
Confidence 899999988887776532 1 01123477999999999999999998 443333 23332221110
Q ss_pred HHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 119 LEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 119 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
+ ...........+.......+.+|++|++..
T Consensus 89 -------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 -------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp -------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred -------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 0 001112233344444456789999999954
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.01 E-value=0.00068 Score=76.03 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++||+++++++...|.... .+-+.++|.+|+|||++|+.+++
T Consensus 171 ~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999997643 33467999999999999999988
No 215
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.00 E-value=0.00037 Score=67.68 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=47.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEe--cCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRV--SLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 148 (545)
-+++.|+|++|+|||+||.+++.. .-..++|++. ....+. . ..+.++..+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~---------------~-----~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG---------------Y-----NTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------C-----BCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------h-----hcCHHHHHHHHH
Confidence 357789999999999999999873 1123567776 222100 0 134566666677
Q ss_pred HhcCCceEEEEEcCCCC
Q 039831 149 DYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~ 165 (545)
+.+.+.+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7776656 999999976
No 216
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.00 E-value=0.0037 Score=63.29 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=92.8
Q ss_pred CCCCEEEccCCCCCccCh-hhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccCCCCcccCcCCccccccccc
Q 039831 373 YLLKYLKLNIPSLKCLPS-LLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFTSA 450 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~lp~~~~~~~~~l~~L~~L~~ 450 (545)
..|+.+.+..+ ++.+.. .+..+.+|+.+.+..+. ..++ ..+....+++.+......++... +..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~---F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKT---FYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTT---TTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeecccc---cccccccccccc
Confidence 34455554432 233322 34556677777776552 3333 55667777777776655555433 256667776654
Q ss_pred ccc-CCCchhhcCCCCCCCEEEEecccCccccch-hHhccCCCCCcEEEeecCCCCCee-ecc--CCCCCCCccEEEEec
Q 039831 451 LNP-SSCTLDILFRLPSVRTLRISGDLSYYQSGV-SKSLCELHKLECLKLVNESKPSRM-VLS--EYQFPPSLIQLSLSN 525 (545)
Q Consensus 451 ~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~L-~lP--~l~~l~~L~~L~L~~ 525 (545)
... ..-....+..+++|+.+.+... ...+ ..+|.++.+|+.+.+. ..+ .|+ .|.+|++|+.+++..
T Consensus 305 ~~~i~~I~~~aF~~c~~L~~i~lp~~----v~~I~~~aF~~c~~L~~i~lp-----~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 305 LDSVKFIGEEAFESCTSLVSIDLPYL----VEEIGKRSFRGCTSLSNINFP-----LSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCEECCC-----TTCCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccceechhhhcCCCCCCEEEeCCc----ccEEhHHhccCCCCCCEEEEC-----ccccEehHHHhhCCCCCCEEEECC
Confidence 332 2222334667788888887542 2223 3678889999999885 223 223 788899999999986
Q ss_pred cCCchhhhhhhhcccccee
Q 039831 526 TELMEDLINSELETQVLQV 544 (545)
Q Consensus 526 ~~l~~~~~~~l~~~~~l~~ 544 (545)
+ +... ...+.++..|+.
T Consensus 376 ~-~~~~-~~~F~~c~~L~~ 392 (394)
T 4fs7_A 376 R-LEQY-RYDFEDTTKFKW 392 (394)
T ss_dssp G-GGGG-GGGBCTTCEEEE
T ss_pred C-CEEh-hheecCCCCCcE
Confidence 5 3332 245777777764
No 217
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.95 E-value=0.015 Score=58.64 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=27.3
Q ss_pred CcCCCCceeEEEecCCCCCCCCCCcchhhhcCCCcccEEEccCCCCCCCC-ccccCCCCCCEEEcc
Q 039831 317 LEYSYMYLQSFLNHSSKSNHLNPKDCEIFFKRFKYLRVLNMGSAVLDQFP-PGLENLYLLKYLKLN 381 (545)
Q Consensus 317 ~~~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~ 381 (545)
..|. +|+++.+..+....+..+.. ..|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+.
T Consensus 84 ~~C~--~L~~i~~~~n~p~~l~~Ig~-~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 84 YNCT--SLKRVTIQDNKPSCVKKIGR-QAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIP 145 (394)
T ss_dssp TTCT--TCCEEEEGGGCCCCCCEECT-TTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECC
T ss_pred hCCc--cCceEeecCCCCCeeeEech-hhchhcccceeeccCCc-cceehhhhhhhhccccccccc
Confidence 4555 66666665433221333333 45555555555444332 22221 223444555555554
No 218
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.89 E-value=0.00026 Score=62.68 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=51.2
Q ss_pred CCCCEEEccCCCCCcc-ChhhhccccCcEEecCCC-CCCccc-Hhhhcc----cccceeeecCcc-CCCCcccCcCCccc
Q 039831 373 YLLKYLKLNIPSLKCL-PSLLCTLLNLETLEMPSS-HIDQSP-EDIWMM----QKLMHLNFGSIT-LPAPPKNYSSSLKN 444 (545)
Q Consensus 373 ~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~-~l~~lp-~~~~~L----~~L~~L~l~~~~-lp~~~~~~~~~l~~ 444 (545)
.+|+.||+++|.++.- -..+.++++|++|+|++| .++.-- ..+..+ ++|++|++++|. +.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----------- 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----------- 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-----------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-----------
Confidence 4688888888876532 234667888888888888 555432 334443 357777776652 321
Q ss_pred cccccccccCCCchhhcCCCCCCCEEEEeccc
Q 039831 445 LIFTSALNPSSCTLDILFRLPSVRTLRISGDL 476 (545)
Q Consensus 445 L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (545)
..+..+..+++|++|++++|.
T Consensus 130 -----------~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 -----------KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp -----------HHHHHGGGCTTCCEEEEESCT
T ss_pred -----------HHHHHHhcCCCCCEEECCCCC
Confidence 122334556777888888776
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.80 E-value=0.0011 Score=73.25 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=37.5
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++||+++++++...|.... ..-+.++|.+|+|||++|+.+++
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 79999999999999997643 23367999999999999999988
No 220
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.78 E-value=0.0054 Score=62.04 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred cCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCee-ecc--CCCCCCCccEEEEeccCCchhhhhhhh
Q 039831 461 LFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRM-VLS--EYQFPPSLIQLSLSNTELMEDLINSEL 537 (545)
Q Consensus 461 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L-~lP--~l~~l~~L~~L~L~~~~l~~~~~~~l~ 537 (545)
+..+.+|+.+.+...- ...-..+|.++.+|++++|. ..+ .|+ .|.+|.+|+.+++..+ +...+...+.
T Consensus 293 F~~~~~L~~i~l~~~i---~~I~~~aF~~c~~L~~i~lp-----~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSV---KFIGEEAFESCTSLVSIDLP-----YLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TTTCTTCCEEEECTTC---CEECTTTTTTCTTCCEECCC-----TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred cccccccccccccccc---ceechhhhcCCCCCCEEEeC-----CcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 5567788888886532 22223568889999999995 223 233 7888999999999876 7777778888
Q ss_pred cccccee
Q 039831 538 ETQVLQV 544 (545)
Q Consensus 538 ~~~~l~~ 544 (545)
++..|+.
T Consensus 364 ~C~~L~~ 370 (394)
T 4fs7_A 364 GCINLKK 370 (394)
T ss_dssp TCTTCCE
T ss_pred CCCCCCE
Confidence 8888764
No 221
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.75 E-value=0.0011 Score=61.87 Aligned_cols=58 Identities=3% Similarity=-0.075 Sum_probs=38.8
Q ss_pred ceeeec---ccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEec
Q 039831 49 DISEFE---RGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVS 110 (545)
Q Consensus 49 ~~vGr~---~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 110 (545)
+|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+++++ ........+.|+..+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred hccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 778743 4455555555543 356788999999999999999998 443333345667653
No 222
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.00079 Score=67.62 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=39.1
Q ss_pred ceeeecccHHHHHHHHHc-----------CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE-----------GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++.|.++.+++|.+.+.. +-...+=|.++|++|.|||.||+++++ .....|
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 788999999998877642 112345678999999999999999999 554443
No 223
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0012 Score=67.41 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=39.1
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccc
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY 100 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 100 (545)
++.|.++.+++|.+.+... -...+=|.++|++|.|||.||+++++ .....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~ 242 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN 242 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC
Confidence 7889999999988876431 12356688999999999999999999 44443
No 224
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.67 E-value=0.0034 Score=62.24 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-ccccCCCCHHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-VRVIIGKDYQFKKSILRD 149 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~~ 149 (545)
-+++.|+|.+|+||||||.+++. .....=..++||+....++.. .+.+++.... ..-....+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 47999999999999999999987 332221346788877766654 4455544321 011223456666666665
Q ss_pred hcC-CceEEEEEcCCCC
Q 039831 150 YLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 150 ~l~-~k~~LlVlDdv~~ 165 (545)
.++ .+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 553 4556899999865
No 225
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.66 E-value=0.0081 Score=52.67 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=18.7
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 039831 72 SVVAILDSSGFDKTAFAADT 91 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v 91 (545)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0012 Score=67.05 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=39.4
Q ss_pred ceeeecccHHHHHHHHHc-----------CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE-----------GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++.|.++.+++|.+.+.. +-...+=|.++|++|.|||++|+++++ ....+|
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 889999999998887642 112345688999999999999999999 444433
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.64 E-value=0.00046 Score=61.17 Aligned_cols=54 Identities=7% Similarity=0.040 Sum_probs=35.2
Q ss_pred HHHHHHhcCCceEEEEEcCCCCC--hh----------------hHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 144 KSILRDYLTNKKYFIVLDDVFHY--SE----------------MWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 144 ~~~l~~~l~~k~~LlVlDdv~~~--~~----------------~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
.-.+.+.+..++-+++||.-... .. ....+...+.. ...|..||++|.+...+.
T Consensus 91 rv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 91 LIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVE 163 (171)
T ss_dssp HHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHH
T ss_pred HHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhh
Confidence 34677788889999999986430 11 33455555543 223777888888876554
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.64 E-value=0.0038 Score=68.50 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=59.9
Q ss_pred ceeeecccHHHHHHHHHc----CC-------CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHH
Q 039831 49 DISEFERGREKFFDLLIE----GP-------SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGK 117 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 117 (545)
++.|.++.+++|.+.+.. .+ ...+=|.++|++|.|||+||+++++ +...+| +.|+.+ +
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------~ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------E 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH------H
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH------H
Confidence 889999999999887632 11 2456788999999999999999999 554443 334311 1
Q ss_pred HHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 118 ILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 118 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
+ .... .......+.......-+..+.+|++|+++.
T Consensus 274 l----~sk~---------~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 274 I----MSKL---------AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp H----HSSC---------TTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred h----hccc---------chHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1 1100 111223334444444456789999999864
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.60 E-value=0.0037 Score=57.89 Aligned_cols=118 Identities=12% Similarity=-0.039 Sum_probs=62.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCcc-----------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVR----------------- 133 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----------------- 133 (545)
-.+++|+|.+|+|||||++.++. .....=..++|+.... ....+...+. .++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 36899999999999999999986 2222112456665433 3444433332 333221100
Q ss_pred --ccCCCCHHHHHHHHHHhcC---CceEEEEEcCCCC----ChhhHHHHHhhCCC--CCCCcEEEEecCCh
Q 039831 134 --VIIGKDYQFKKSILRDYLT---NKKYFIVLDDVFH----YSEMWSDVVELLPD--DQNGSRVLILVTEP 193 (545)
Q Consensus 134 --~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~----~~~~~~~l~~~~~~--~~~gs~iivTtR~~ 193 (545)
.....+.++....+.+.+. -+..++|+|.... +......+...+.. ...|..||+||...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0011255666655555443 2334999999863 12222223222221 12477899988776
No 230
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.59 E-value=0.0011 Score=61.30 Aligned_cols=114 Identities=12% Similarity=-0.060 Sum_probs=64.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
-.++.|+|..|+||||++..+.+ +...+-..++.+.-.... + ....+++.++..... .......++.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~--~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPS--VEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCC--EEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccc--cccCCHHHHHHHHHHH
Confidence 46888999999999999988777 443332233444322211 1 112344444432221 1123345666677766
Q ss_pred cCCc-eEEEEEcCCCC-ChhhHHHHHhhCCCCCCCcEEEEecCChh
Q 039831 151 LTNK-KYFIVLDDVFH-YSEMWSDVVELLPDDQNGSRVLILVTEPT 194 (545)
Q Consensus 151 l~~k-~~LlVlDdv~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 194 (545)
+.+. .-+||+|.+.. ..+..+.+..... .|-.||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 6554 44999999976 1344444433221 2788999988544
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.59 E-value=0.0024 Score=71.60 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=37.0
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+...+... +.....+.|+|+.|+|||++|+++++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999988887542 12346889999999999999999988
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.58 E-value=0.0028 Score=70.11 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=37.3
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.+..++.+...+... ......+.++|++|+|||++|+++++
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999988888642 12344799999999999999999998
No 233
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.00098 Score=67.92 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=39.1
Q ss_pred ceeeecccHHHHHHHHHc-----------CCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE-----------GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++.|.++.+++|.+.+.. +-...+=|.++|++|.|||.||+++++ +....|
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 788999999998876522 113456678999999999999999999 554443
No 234
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.56 E-value=0.0098 Score=55.56 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCC---CCCCCcEEEEecCChhHHh
Q 039831 143 KKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLP---DDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 143 ~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~---~~~~gs~iivTtR~~~v~~ 197 (545)
..-.+.+.+..++-+++||..-. +...-..+...+. ....|..||++|.+...+.
T Consensus 134 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 134 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 34456667777788999999865 2233344444442 2234777888888866544
No 235
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.54 E-value=0.014 Score=56.23 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=34.7
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHhcCcccccc---cceeEEEEecCCCCHHHHHHHHHH
Q 039831 68 PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY---FDCLAWVRVSLLYDFGKILEDIIK 124 (545)
Q Consensus 68 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~~~~~~~~~~~~~~i~~ 124 (545)
.....+|+|+|..|+||||||+.+.. ..... ......|+...-+-.......+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~--~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~ 85 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLNE 85 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH--HhhhcCCCCceEEEeccccccCChHHHHHHhc
Confidence 34678999999999999999998877 33221 223444465443333444444443
No 236
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0015 Score=66.57 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=39.1
Q ss_pred ceeeecccHHHHHHHHHc----C-------CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE----G-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++.|.++.+++|.+.+.. . -...+=|.++|++|.|||.+|+++++ .....|
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 889999999998876432 1 12356688999999999999999999 444433
No 237
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.48 E-value=0.0046 Score=60.84 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=57.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-----cccCCCCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFY----FDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-----RVIIGKDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~ 141 (545)
-.++.|+|.+|+||||||.+++........ =..++|++....++...+. +++..++..... .-....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999888763222211 1367899988877776655 345555442110 001122333
Q ss_pred ---HHHHHHHHhcC--CceEEEEEcCCCC
Q 039831 142 ---FKKSILRDYLT--NKKYFIVLDDVFH 165 (545)
Q Consensus 142 ---~~~~~l~~~l~--~k~~LlVlDdv~~ 165 (545)
++...+.+.++ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23445555553 4677999999854
No 238
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.45 E-value=0.025 Score=52.49 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhh-CCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVEL-LPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~-~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.+.+.+..++-+++||..-. +...-..+... +.....|..||++|.+...+.
T Consensus 135 qkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 3334466777777888999999865 23333445443 233234677889998876544
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.44 E-value=0.0048 Score=65.22 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=35.6
Q ss_pred ceeeecccHHHHHHHHHc----CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE----GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++..+.+.+.+.- .......+.++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 688988888887665532 122456899999999999999999998
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0088 Score=55.78 Aligned_cols=94 Identities=6% Similarity=0.000 Sum_probs=54.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-----ccccCCCCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKF----YFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-----VRVIIGKDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 141 (545)
-.+++|+|.+|+||||||..++....... .-..++|++....+....+. .++..++.... -.-....+.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46899999999999999999887311211 12468888877655554433 34444443210 0000122333
Q ss_pred HH---HHHHHHhcC-CceEEEEEcCCCC
Q 039831 142 FK---KSILRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~~---~~~l~~~l~-~k~~LlVlDdv~~ 165 (545)
+. ...+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 32 233444443 4678999999865
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.36 E-value=0.003 Score=70.04 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=40.0
Q ss_pred ceeeecccHHHHHHHHHc-----------CCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc
Q 039831 49 DISEFERGREKFFDLLIE-----------GPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFY 100 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 100 (545)
+++|.++.++++.+++.. .-....-|.|+|.+|+||||||+++++ .....
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~ 265 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF 265 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCc
Confidence 899999999999988853 112345688999999999999999998 44433
No 242
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.33 E-value=0.009 Score=54.81 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=65.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccc-cc--ccc---------eeEEEEecC----CCCHH----------------HHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYV-KF--YFD---------CLAWVRVSL----LYDFG----------------KIL 119 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~---------~~~wv~~~~----~~~~~----------------~~~ 119 (545)
.+++|+|+.|+|||||.+.++.-.+. .+ .|+ .+.+|.-.. ..++. +..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 58999999999999999999873211 00 011 123332110 11221 122
Q ss_pred HHHHHHhCCCCCccccCCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhH
Q 039831 120 EDIIKSVMPPSRVRVIIGKD-YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTL 195 (545)
Q Consensus 120 ~~i~~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v 195 (545)
..++..++...........+ .+...-.+...+..++-+++||..-. +...-..+...+.. ...|..||++|.+...
T Consensus 116 ~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 116 MDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp HHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred HHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 34444444332111111222 34444567778888888999998754 12222222222211 1125678888888665
Q ss_pred Hh
Q 039831 196 LT 197 (545)
Q Consensus 196 ~~ 197 (545)
+.
T Consensus 196 ~~ 197 (214)
T 1sgw_A 196 YC 197 (214)
T ss_dssp TS
T ss_pred HH
Confidence 44
No 243
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.33 E-value=0.01 Score=59.01 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=66.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCC--ccccCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR--VRVIIGKDYQFKKSILR 148 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~ 148 (545)
-.+++|+|+.|+||||+.+.+.. .+.......+ +.+.+..... ...... .+.....+.....+.++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHH
Confidence 35999999999999999999877 3332222222 2222221110 000000 00001111123455888
Q ss_pred HhcCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 149 DYLTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 149 ~~l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
..|...+=+|++|.+.+ .+.++.+.... ..|.-||+||...+.+.
T Consensus 191 ~aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 191 SALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 99999999999999988 77776655542 23667999998877665
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.32 E-value=0.0034 Score=57.11 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=33.1
Q ss_pred ecccHHHHHHHHHcC-CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 53 FERGREKFFDLLIEG-PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 53 r~~~~~~i~~~L~~~-~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
|++.++++.+.+... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456677888877753 23568999999999999999999886
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.31 E-value=0.0055 Score=60.17 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc---------cc-----ceeEEEEecCCCCHHHHHHHH
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKF---------YF-----DCLAWVRVSLLYDFGKILEDI 122 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i 122 (545)
...+-..|..+=..-.++.|+|.+|+|||+||..++....... .. ..++|++....++..++.+ +
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~ 162 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-M 162 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-H
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-H
Confidence 3444444432212357999999999999999988876322211 11 3678999888877776653 4
Q ss_pred HHHhCCCCCc-----cccCCCCHHH---HHHHHHHhcC--CceEEEEEcCCCC
Q 039831 123 IKSVMPPSRV-----RVIIGKDYQF---KKSILRDYLT--NKKYFIVLDDVFH 165 (545)
Q Consensus 123 ~~~l~~~~~~-----~~~~~~~~~~---~~~~l~~~l~--~k~~LlVlDdv~~ 165 (545)
+..++..... .-....+.++ +...+.+.++ .+.-+||+|.+..
T Consensus 163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 4555443110 0011223332 3445555554 3567999999854
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.29 E-value=0.0021 Score=58.78 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.6
Q ss_pred cHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 56 GREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 56 ~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|.+.+........+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555543333568999999999999999999987
No 247
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.27 E-value=0.0017 Score=64.19 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=36.5
Q ss_pred ceeeecccHHHHHHHHHcC---CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+...+... +.....+.++|++|+||||||+.+++
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 7889888888877776542 22346789999999999999999998
No 248
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.27 E-value=0.033 Score=56.20 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=33.2
Q ss_pred cCCCCCCCEEEEecccCccccchhHhccCCCCCcEEEeecCCCCCee-ecc--CCCCCCCccEEEEeccCC
Q 039831 461 LFRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSRM-VLS--EYQFPPSLIQLSLSNTEL 528 (545)
Q Consensus 461 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L-~lP--~l~~l~~L~~L~L~~~~l 528 (545)
|..+.+|+.+.+...- ...-..+|.++.+|+++.|. ..+ .|+ .|.+|.+|+.+++.++..
T Consensus 307 F~~c~~L~~i~lp~~v---~~I~~~aF~~C~~L~~i~ip-----~sv~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 307 FAGCISLKSIDIPEGI---TQILDDAFAGCEQLERIAIP-----SSVTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTCTTCCEEECCTTC---CEECTTTTTTCTTCCEEEEC-----TTCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ecCCCCcCEEEeCCcc---cEehHhHhhCCCCCCEEEEC-----cccCEEhHhHhhCCCCCCEEEECCcee
Confidence 4455566666654321 11112456666666666663 222 122 566788888888877654
No 249
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.27 E-value=0.0092 Score=59.14 Aligned_cols=95 Identities=6% Similarity=0.037 Sum_probs=56.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEecCCCCHHHHHHHHHHHhCCCCC--------ccccCC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKF----YFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR--------VRVIIG 137 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~ 137 (545)
.-.++.|+|.+|+||||||..++....... .=..++||+....++...+. .++..++.... ......
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999998876322211 12468899988877776654 34455543210 000111
Q ss_pred CCHHHHHHHHHHhcC---CceEEEEEcCCCC
Q 039831 138 KDYQFKKSILRDYLT---NKKYFIVLDDVFH 165 (545)
Q Consensus 138 ~~~~~~~~~l~~~l~---~k~~LlVlDdv~~ 165 (545)
....++...+.+.++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 112233334444443 4567899998854
No 250
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0023 Score=64.60 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=39.3
Q ss_pred ceeeecccHHHHHHHHHc----C-------CCCcEEEEEEcCCCChHHHHHHHHhcCccccccc
Q 039831 49 DISEFERGREKFFDLLIE----G-------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF 101 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 101 (545)
++.|.++.+++|.+.+.. . -...+=|.++|++|.|||.||+++++ .....|
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 888999999998887632 1 12345688999999999999999999 444443
No 251
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.22 E-value=0.022 Score=54.07 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=64.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE----------------EecCCC----CHH--------------H
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWV----------------RVSLLY----DFG--------------K 117 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv----------------~~~~~~----~~~--------------~ 117 (545)
.+++|+|..|+|||||.+.++.- . ...+.+++ .+.+.+ ++. +
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl--~--p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~ 106 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL--L--PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD 106 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS--S--CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCC--C--CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHH
Confidence 48999999999999999999863 1 11122211 112221 111 1
Q ss_pred HHHHHHHHhCCC-CC-ccccCCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCC
Q 039831 118 ILEDIIKSVMPP-SR-VRVIIGKD-YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTE 192 (545)
Q Consensus 118 ~~~~i~~~l~~~-~~-~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~ 192 (545)
...+++..++.. .. .......+ -+...-.+...+..++-+++||.--. +...-+.+...+.... . .||++|.+
T Consensus 107 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~-~-tviivtHd 184 (263)
T 2pjz_A 107 LFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG-K-EGILVTHE 184 (263)
T ss_dssp HHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC-S-EEEEEESC
T ss_pred HHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc-C-cEEEEEcC
Confidence 234455555543 21 11112222 34444566777778888999999765 1222222222222111 1 68888888
Q ss_pred hhHHh
Q 039831 193 PTLLT 197 (545)
Q Consensus 193 ~~v~~ 197 (545)
...+.
T Consensus 185 ~~~~~ 189 (263)
T 2pjz_A 185 LDMLN 189 (263)
T ss_dssp GGGGG
T ss_pred HHHHH
Confidence 66544
No 252
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.22 E-value=0.022 Score=53.73 Aligned_cols=127 Identities=10% Similarity=0.003 Sum_probs=66.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-cc--ccc-------------eeEEEEec----CCCCHHH-------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KF--YFD-------------CLAWVRVS----LLYDFGK------------- 117 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~-------------~~~wv~~~----~~~~~~~------------- 117 (545)
-.+++|+|+.|+|||||.+.++.-.+. .+ .|+ .+.+|.-. ...++.+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 120 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS 120 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCCh
Confidence 368999999999999999999873111 00 011 12233211 1112211
Q ss_pred -----HHHHHHHHhCCCCC-ccccCCCCH-HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEE
Q 039831 118 -----ILEDIIKSVMPPSR-VRVIIGKDY-QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVL 187 (545)
Q Consensus 118 -----~~~~i~~~l~~~~~-~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~ii 187 (545)
....++..++.... .......+. +...-.+...+..++-+++||.--. +...-..+...+.. ...|..||
T Consensus 121 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii 200 (256)
T 1vpl_A 121 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200 (256)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 12334444443321 111122222 3444566777888888999999765 12222222222211 12367799
Q ss_pred EecCChhHHh
Q 039831 188 ILVTEPTLLT 197 (545)
Q Consensus 188 vTtR~~~v~~ 197 (545)
++|.+...+.
T Consensus 201 ivtHd~~~~~ 210 (256)
T 1vpl_A 201 VSSHNMLEVE 210 (256)
T ss_dssp EEECCHHHHT
T ss_pred EEcCCHHHHH
Confidence 9999977666
No 253
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.21 E-value=0.009 Score=59.30 Aligned_cols=88 Identities=16% Similarity=0.024 Sum_probs=55.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-cccCCCCHHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-RVIIGKDYQFKKSILRD 149 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~ 149 (545)
-+++.|+|.+|+||||||.+++. .....=..++|++....++.. .+..++..... .-....+.++..+.+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 46899999999999999998876 232222357899887766653 24444432110 00122345666665555
Q ss_pred hcC-CceEEEEEcCCCC
Q 039831 150 YLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 150 ~l~-~k~~LlVlDdv~~ 165 (545)
..+ .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 554 3566999999855
No 254
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.20 E-value=0.011 Score=61.33 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=34.2
Q ss_pred ceeeecccHHHHHHHHHc---C----C---CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE---G----P---SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~----~---~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.... . + .-.+=|.|+|++|+||||||+++++
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 899999888877766532 1 0 0112388999999999999999998
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.16 E-value=0.0072 Score=58.76 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHH--HHHHHHHHhCCCCCccccCCCCHHHH-HHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGK--ILEDIIKSVMPPSRVRVIIGKDYQFK-KSI 146 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~ 146 (545)
...+++|+|.+|+||||++..++. ..+..=..+.++.. +.+.... -+...+...+.+..... ...+...+ .+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~-s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHS-EGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCS-TTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecC-CccCHHHHHHHH
Confidence 467999999999999999998887 33322122444443 2333221 12334444432211111 12223222 334
Q ss_pred HHHhcCCceEEEEEcCCCC
Q 039831 147 LRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 147 l~~~l~~k~~LlVlDdv~~ 165 (545)
+...+..+.-++|+|-...
T Consensus 179 l~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHTTCSEEEEEECCC
T ss_pred HHHHHhcCCCEEEEECCCc
Confidence 5554545555788887643
No 256
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.10 E-value=0.028 Score=53.40 Aligned_cols=127 Identities=14% Similarity=0.050 Sum_probs=66.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc-c--cc--------------ceeEEEEec----CCC----------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK-F--YF--------------DCLAWVRVS----LLY---------------- 113 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F--------------~~~~wv~~~----~~~---------------- 113 (545)
-.+++|+|+.|+|||||++.+..-.+.. + .| ..+.++.-. ...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 116 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGS 116 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCST
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcH
Confidence 3689999999999999999998621110 0 00 012222100 001
Q ss_pred CHHHHHHHHHHHhCCCCC-ccccCCCCH-HHHHHHHHHhcCC------ceEEEEEcCCCC--ChhhHHHHHhhCCC--CC
Q 039831 114 DFGKILEDIIKSVMPPSR-VRVIIGKDY-QFKKSILRDYLTN------KKYFIVLDDVFH--YSEMWSDVVELLPD--DQ 181 (545)
Q Consensus 114 ~~~~~~~~i~~~l~~~~~-~~~~~~~~~-~~~~~~l~~~l~~------k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~ 181 (545)
...+....++..++.... .......+. +.-.-.|.+.|.. ++-+++||.--. +...-..+...+.. ..
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 122334555666654332 111222333 3334456666666 888999999754 12222222222221 12
Q ss_pred CCcEEEEecCChhHHh
Q 039831 182 NGSRVLILVTEPTLLT 197 (545)
Q Consensus 182 ~gs~iivTtR~~~v~~ 197 (545)
.|..||++|.+...+.
T Consensus 197 ~~~tvi~vtHdl~~~~ 212 (266)
T 4g1u_C 197 EPLAVCCVLHDLNLAA 212 (266)
T ss_dssp SSEEEEEECSCHHHHH
T ss_pred CCCEEEEEEcCHHHHH
Confidence 2457899998877665
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.10 E-value=0.012 Score=58.68 Aligned_cols=105 Identities=13% Similarity=0.002 Sum_probs=62.9
Q ss_pred cccHHHHHHHHHcCC-CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc
Q 039831 54 ERGREKFFDLLIEGP-SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV 132 (545)
Q Consensus 54 ~~~~~~i~~~L~~~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 132 (545)
..-...+-..|..+. ..-+++.|+|.+|+||||||.+++.. ....=..++||+....++.. .+..++.....
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~ 128 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDE 128 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGG
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHH
Confidence 333444544443111 12458889999999999999888763 32222368899988776654 23444432110
Q ss_pred -cccCCCCHHHHHHHHHHhcCC-ceEEEEEcCCCC
Q 039831 133 -RVIIGKDYQFKKSILRDYLTN-KKYFIVLDDVFH 165 (545)
Q Consensus 133 -~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 165 (545)
.-.+..+.++..+.+....+. ..-+||+|.+..
T Consensus 129 l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 129 LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp CEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTT
T ss_pred ceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 001234567777777666543 456899999865
No 258
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.10 E-value=0.0019 Score=62.94 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=36.5
Q ss_pred ceeeecccHHHHHHHHHcC------------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.++.++.+...+... .....-+.++|.+|+|||++|+++++
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998887540 11234677999999999999999998
No 259
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.02 E-value=0.015 Score=56.28 Aligned_cols=87 Identities=7% Similarity=0.024 Sum_probs=55.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-cccCCCCHHHH-HHHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-RVIIGKDYQFK-KSIL 147 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~~~l 147 (545)
.++-|+|.+|+||||||.+++. .....+ ..++||+....++.. .+++++..... .-....+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 4789999999999999988776 333322 357899888777754 25666654320 01123345555 4333
Q ss_pred HHh--c-CCceEEEEEcCCCC
Q 039831 148 RDY--L-TNKKYFIVLDDVFH 165 (545)
Q Consensus 148 ~~~--l-~~k~~LlVlDdv~~ 165 (545)
... + .++.-+||+|-|..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 322 3 35688999999976
No 260
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.96 E-value=0.0047 Score=68.34 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=36.9
Q ss_pred ceeeecccHHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.++.++.+...+... +.....+.++|++|+|||++|+++++
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 5889999998888877531 12345789999999999999999998
No 261
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.94 E-value=0.011 Score=61.55 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=35.8
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.++.++.+...+..+ .-|.++|++|+|||+||+++++
T Consensus 23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence 5889999999888887764 3577999999999999999998
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.94 E-value=0.0033 Score=55.70 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999998
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.92 E-value=0.0031 Score=55.43 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 264
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.018 Score=58.57 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 265
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.89 E-value=0.0042 Score=62.18 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=35.8
Q ss_pred ceeeecccHHHHHHHHH-------------cCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLI-------------EGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.+..++.+...+. ......+.|.++|++|+|||++|+++++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999888883 1111345688999999999999999998
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.87 E-value=0.01 Score=58.92 Aligned_cols=88 Identities=13% Similarity=-0.031 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-cccCCCCHHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-RVIIGKDYQFKKSILRD 149 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~ 149 (545)
-+++.|.|.+|+||||||.+++.. ....=..++||+....++... +..++..... .-.+..+.++..+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 468999999999999999888763 322223688999877776432 3444432110 00112345555555544
Q ss_pred hcC-CceEEEEEcCCCC
Q 039831 150 YLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 150 ~l~-~k~~LlVlDdv~~ 165 (545)
..+ .+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 432 3455899999854
No 267
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.87 E-value=0.018 Score=56.48 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+++|+|+.|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998887
No 268
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.85 E-value=0.022 Score=53.75 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=66.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccc-ccc---cceeEEEEecC----CCCH----------------------HHHHHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYV-KFY---FDCLAWVRVSL----LYDF----------------------GKILED 121 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~---F~~~~wv~~~~----~~~~----------------------~~~~~~ 121 (545)
.+++|+|..|+|||||.+.++.-.+. .+. ...+.||.-.. ..++ .+....
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 58999999999999999999873211 111 01122332000 0011 122344
Q ss_pred HHHHhCCCCC-ccccCCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhH
Q 039831 122 IIKSVMPPSR-VRVIIGKD-YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTL 195 (545)
Q Consensus 122 i~~~l~~~~~-~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v 195 (545)
++..++.... .......+ .+...-.|...+..++-+++||..-. +...-..+...+.. ...|..||++|.+.+.
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 4555543321 11112222 23334566777777888999999865 12222222222221 1226679999998776
Q ss_pred Hh
Q 039831 196 LT 197 (545)
Q Consensus 196 ~~ 197 (545)
+.
T Consensus 192 ~~ 193 (253)
T 2nq2_C 192 VV 193 (253)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.79 E-value=0.005 Score=55.20 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+||||+++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999988
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.77 E-value=0.019 Score=55.53 Aligned_cols=86 Identities=10% Similarity=0.045 Sum_probs=45.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEecC-CCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHH
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DCLAWVRVSL-LYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSIL 147 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 147 (545)
..++++|+|.+|+||||++..++. .....- ..+..+.... .....+.+.......+.+.. ...+...+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----~~~~~~~l~~al 177 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE----VCYTKEEFQQAK 177 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC----BCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE----ecCCHHHHHHHH
Confidence 357999999999999999988876 332111 1344554332 22233333333333322211 122344454455
Q ss_pred HHhcCCceEEEEEcCC
Q 039831 148 RDYLTNKKYFIVLDDV 163 (545)
Q Consensus 148 ~~~l~~k~~LlVlDdv 163 (545)
.. + .+.=++|+|-.
T Consensus 178 ~~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 178 EL-F-SEYDHVFVDTA 191 (296)
T ss_dssp HH-G-GGSSEEEEECC
T ss_pred HH-h-cCCCEEEEeCC
Confidence 43 3 44457888854
No 271
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.75 E-value=0.0077 Score=54.03 Aligned_cols=121 Identities=13% Similarity=-0.017 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC---CCCHHHHHHHHHHHh---CC--CCCccc--cCCCCH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL---LYDFGKILEDIIKSV---MP--PSRVRV--IIGKDY 140 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~~l---~~--~~~~~~--~~~~~~ 140 (545)
...|-|++..|.||||.|-...- +.-.+=..+.++...+ ......++..+.-.+ +. ....+. .+....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35677777788999999966655 3322211344443322 222333333321000 00 000000 000111
Q ss_pred HHHHHHHHHhcCCceE-EEEEcCCCC----ChhhHHHHHhhCCCCCCCcEEEEecCCh
Q 039831 141 QFKKSILRDYLTNKKY-FIVLDDVFH----YSEMWSDVVELLPDDQNGSRVLILVTEP 193 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~-LlVlDdv~~----~~~~~~~l~~~~~~~~~gs~iivTtR~~ 193 (545)
.......++.+.+.+| |||||++-. ..-..+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 3334556666655444 999999832 0122233333333333456799999995
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.72 E-value=0.0043 Score=56.21 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|.|+|+.|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.71 E-value=0.018 Score=57.07 Aligned_cols=95 Identities=11% Similarity=0.115 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccc---c-eeEEEEecCCCCHHHHHHHHHHHhCCCCC--cc---ccCCCC-
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYF---D-CLAWVRVSLLYDFGKILEDIIKSVMPPSR--VR---VIIGKD- 139 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~---~~~~~~- 139 (545)
.-.++.|+|..|+|||||+..++......... . .++||+....+....+ ..++........ .. -....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 35799999999999999999988732112111 2 3488887665544333 334444432210 00 000111
Q ss_pred --HHHHHHHHHHhcC------CceEEEEEcCCCC
Q 039831 140 --YQFKKSILRDYLT------NKKYFIVLDDVFH 165 (545)
Q Consensus 140 --~~~~~~~l~~~l~------~k~~LlVlDdv~~ 165 (545)
..++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 2333444444443 4678999999865
No 274
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.71 E-value=0.019 Score=48.02 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=40.5
Q ss_pred cEEEccCCCCC--CCCccccCCCCCCEEEccCCCCCccChh-hhccccCcEEecCCCC
Q 039831 353 RVLNMGSAVLD--QFPPGLENLYLLKYLKLNIPSLKCLPSL-LCTLLNLETLEMPSSH 407 (545)
Q Consensus 353 ~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 407 (545)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. +..+.+|++|+|.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46778888887 7886543 4688888888888888765 5678888888888873
No 275
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.65 E-value=0.013 Score=55.61 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDY 150 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 150 (545)
-.+++|+|+.|+||||+.+.+.. .+...+.+.+++.- ++.. .+.+.. ..+ ..+..-..+.......++..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g-~~i~--~~~~~~-~~~----v~q~~~gl~~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIE-DPIE--YVFKHK-KSI----VNQREVGEDTKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEE-SSCC--SCCCCS-SSE----EEEEEBTTTBSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcC-Ccce--eecCCc-cee----eeHHHhCCCHHHHHHHHHHH
Confidence 47999999999999999999887 33222234443321 1100 000000 000 00000000112235566677
Q ss_pred cCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 151 LTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 151 l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+..++=++++|...+ .+....+.... ..|.-|++||.+.+++.
T Consensus 95 L~~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 95 LREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HhhCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 766777889999976 54443333322 23667888888766433
No 276
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.64 E-value=0.0087 Score=61.85 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=35.3
Q ss_pred ceeeecccHHHHHHHH---HcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLL---IEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++.+..++ ..+....+-+.++|++|+|||++|+++++
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 8999999888655544 33333345688999999999999999998
No 277
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.61 E-value=0.015 Score=48.71 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=45.7
Q ss_pred CEEEccCCCCC--ccChhhhccccCcEEecCCCCCCccc-HhhhcccccceeeecCccC
Q 039831 376 KYLKLNIPSLK--CLPSLLCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSITL 431 (545)
Q Consensus 376 ~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~l 431 (545)
..++.+++.++ .+|..+. .+|++|+|++|.+..+| ..|..+++|+.|++++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888898888 8987653 36999999999999998 5678999999999998744
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.59 E-value=0.0063 Score=53.84 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 279
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.57 E-value=0.019 Score=58.83 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=62.1
Q ss_pred HHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEecCCC-CHHHHHHHHHHHhCCC-------C
Q 039831 60 FFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYV-KFYFDCLAWVRVSLLY-DFGKILEDIIKSVMPP-------S 130 (545)
Q Consensus 60 i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 130 (545)
+++.|..=. .-+-++|.|.+|+|||+|+..+.+ .+ +.+-+.++++-++... ...++.+++...=... .
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 444554322 234689999999999999998887 33 2334677888887654 4667777776532111 0
Q ss_pred C--ccccCCCC------HHHHHHHHHHhcCC---ceEEEEEcCCCC
Q 039831 131 R--VRVIIGKD------YQFKKSILRDYLTN---KKYFIVLDDVFH 165 (545)
Q Consensus 131 ~--~~~~~~~~------~~~~~~~l~~~l~~---k~~LlVlDdv~~ 165 (545)
. .....+.. .....-.+.+++++ +.+|+++||+-.
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1 00011111 22334456666654 799999999843
No 280
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.53 E-value=0.073 Score=51.16 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhh-CCCCCCCcEEEEecCChhHHh
Q 039831 143 KKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVEL-LPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 143 ~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~-~~~~~~gs~iivTtR~~~v~~ 197 (545)
..-.+.+.+..++-+++||..-. +...-..+... +.....|..||++|.+...+.
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 34456677777788999999865 23333444443 222234677999998876554
No 281
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.52 E-value=0.0063 Score=57.42 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.1
Q ss_pred ceeeecccHHHHHHHHHc--C---------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE--G---------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~--~---------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.... . .-... +.|+|++|+||||||+++++
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence 889988877777665431 1 01123 88999999999999999998
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.51 E-value=0.0056 Score=54.59 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+.|.|+|+.|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.50 E-value=0.0061 Score=54.27 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.48 E-value=0.0051 Score=54.16 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|+|+.|+||||+|+.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 285
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.48 E-value=0.007 Score=57.97 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=33.4
Q ss_pred ceeeecccHHHHHHHHHc---C---------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE---G---------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~---~---------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++.|.++.+++|.+.+.. . ....+ ++++|++|+||||||++++.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 788998888888775421 0 11223 89999999999999999998
No 286
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.47 E-value=0.0071 Score=59.57 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=36.0
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|+++.++.+...+..+ .-+.++|.+|+|||++|+++++
T Consensus 28 ~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 6899999999998888764 2477999999999999999998
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.46 E-value=0.006 Score=53.47 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+.+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.44 E-value=0.008 Score=54.45 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|+.|+||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999988
No 289
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.41 E-value=0.06 Score=53.35 Aligned_cols=127 Identities=11% Similarity=0.070 Sum_probs=68.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc-c--cc-----------------ceeEEEEec----CCCCHH----------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK-F--YF-----------------DCLAWVRVS----LLYDFG---------- 116 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F-----------------~~~~wv~~~----~~~~~~---------- 116 (545)
-.+++|+|+.|+|||||.+.+..-.+-. + .| ..+.+|.=. ...++.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~ 133 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 133 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999997632110 0 01 112233100 111111
Q ss_pred --------HHHHHHHHHhCCCCC-ccccCCCC-HHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCC
Q 039831 117 --------KILEDIIKSVMPPSR-VRVIIGKD-YQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQN 182 (545)
Q Consensus 117 --------~~~~~i~~~l~~~~~-~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~ 182 (545)
+....++..++.... .......+ -+.-.-.|.+.|..++-+|++|.--. +...-..+...+.. ...
T Consensus 134 ~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~ 213 (366)
T 3tui_C 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence 123344455544322 11112222 34445677888889999999999765 12222222222221 123
Q ss_pred CcEEEEecCChhHHh
Q 039831 183 GSRVLILVTEPTLLT 197 (545)
Q Consensus 183 gs~iivTtR~~~v~~ 197 (545)
|..||++|.+-.++.
T Consensus 214 g~Tii~vTHdl~~~~ 228 (366)
T 3tui_C 214 GLTILLITHEMDVVK 228 (366)
T ss_dssp CCEEEEEESCHHHHH
T ss_pred CCEEEEEecCHHHHH
Confidence 778999999988776
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.38 E-value=0.0081 Score=53.73 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 291
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.38 E-value=0.0061 Score=54.57 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
|.|.|+|++|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.33 E-value=0.011 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|+.|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 293
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.32 E-value=0.046 Score=53.32 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=42.5
Q ss_pred eecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH
Q 039831 52 EFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 52 Gr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
|...-...+-+.+ .+=..-.++.|.|.+|+||||||..++.+...++ ..++|++.. -...++...+...
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3334445555555 3212346899999999999999988876322222 567788755 4455555555544
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.29 E-value=0.011 Score=53.92 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999988
No 295
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.29 E-value=0.055 Score=53.53 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=67.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc-c--ccc------------eeEEEEec----CCCCHH---------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK-F--YFD------------CLAWVRVS----LLYDFG--------------- 116 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~------------~~~wv~~~----~~~~~~--------------- 116 (545)
-.+++|+|+.|+|||||.+.++.-.+.. + .|+ .+.+|.-. ...++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~ 120 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKD 120 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999998632110 0 011 12233100 111111
Q ss_pred ---HHHHHHHHHhCCCCC-cccc-CCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEE
Q 039831 117 ---KILEDIIKSVMPPSR-VRVI-IGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVL 187 (545)
Q Consensus 117 ---~~~~~i~~~l~~~~~-~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~ii 187 (545)
+-...++..++.... .... +-+.-++..-.|.+.|..++-+++||.--. +...-..+...+.. ...|..||
T Consensus 121 ~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi 200 (355)
T 1z47_A 121 EMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200 (355)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 123344555544322 1111 222234445577888888889999999755 12111222222211 11266799
Q ss_pred EecCChhHHh
Q 039831 188 ILVTEPTLLT 197 (545)
Q Consensus 188 vTtR~~~v~~ 197 (545)
++|.+...+.
T Consensus 201 ~vTHd~~~a~ 210 (355)
T 1z47_A 201 FVTHDQEEAL 210 (355)
T ss_dssp EECSCHHHHH
T ss_pred EECCCHHHHH
Confidence 9999977665
No 296
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.26 E-value=0.061 Score=53.09 Aligned_cols=125 Identities=18% Similarity=0.110 Sum_probs=67.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc-c--ccce------------eEEEEecCC------CCHH-------------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK-F--YFDC------------LAWVRVSLL------YDFG------------- 116 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~------------~~wv~~~~~------~~~~------------- 116 (545)
-.+++|+|+.|+|||||.+.++.-.+.. + .|++ +.+|. +. .++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~--Q~~~l~~~ltv~enl~~~~~~~~~~ 103 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY--QNYSLFPHMNVKKNLEFGMRMKKIK 103 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC--TTCCCCTTSCHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe--cCcccCCCCCHHHHHHHHHHHcCCC
Confidence 3589999999999999999998632110 0 0111 22221 21 1221
Q ss_pred --HHHHHHHHHhCCCCC-cccc-CCCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEE
Q 039831 117 --KILEDIIKSVMPPSR-VRVI-IGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLI 188 (545)
Q Consensus 117 --~~~~~i~~~l~~~~~-~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iiv 188 (545)
+-...++..++.... .... +-+.-+...-.|.+.|..++-+++||.--. +...-..+...+.. ...|..||+
T Consensus 104 ~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 104 DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 123345555554332 1111 222334445577888888899999999755 12111222222211 122667899
Q ss_pred ecCChhHHh
Q 039831 189 LVTEPTLLT 197 (545)
Q Consensus 189 TtR~~~v~~ 197 (545)
+|.+...+.
T Consensus 184 vTHd~~~~~ 192 (348)
T 3d31_A 184 ITHDQTEAR 192 (348)
T ss_dssp EESCHHHHH
T ss_pred EeCCHHHHH
Confidence 998877555
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.26 E-value=0.0098 Score=53.23 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.26 E-value=0.053 Score=54.66 Aligned_cols=94 Identities=9% Similarity=0.022 Sum_probs=52.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEecCCCCHHHHHHHHHHHhCCCCC-----ccccCCCCHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKF----YFDCLAWVRVSLLYDFGKILEDIIKSVMPPSR-----VRVIIGKDYQ 141 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 141 (545)
-.++.|+|.+|+|||||+..++-...... .-..++|++....+....+ +.++..++.... ..-....+.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46899999999999999996652111111 2245888887766665544 335565554211 0001112222
Q ss_pred H---HHHHHHHhcC-CceEEEEEcCCCC
Q 039831 142 F---KKSILRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 142 ~---~~~~l~~~l~-~k~~LlVlDdv~~ 165 (545)
. ....+.+.+. .+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 2223333332 4678999999754
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.26 E-value=0.0096 Score=58.61 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.7
Q ss_pred eeecccHHHHHHHHHc--CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 51 SEFERGREKFFDLLIE--GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 51 vGr~~~~~~i~~~L~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
|+.+.-.+++.+.+.. .......|.|+|+.|+||||+|+.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3445566677776642 123456789999999999999999987
No 300
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.25 E-value=0.027 Score=57.39 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...||.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888776
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.25 E-value=0.0082 Score=57.53 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred ceeeecccHHHHHHHHHc--C---------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE--G---------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~--~---------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.++.++++.+.... . .-... +.|+|++|+||||||++++.
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHH
Confidence 899998887777665532 1 01123 88999999999999999998
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.24 E-value=0.0063 Score=55.20 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 303
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.23 E-value=0.0079 Score=58.19 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=23.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFY 100 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 100 (545)
..+.+.++|++|+|||+||+++++ ....+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~--~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR--KMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH--HHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 456788999999999999999999 55433
No 304
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.22 E-value=0.073 Score=54.30 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHHcC-------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 57 REKFFDLLIEG-------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 57 ~~~i~~~L~~~-------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++.+++... +...++|.++|.+|+||||+|..++.
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 13478999999999999999988876
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.21 E-value=0.0085 Score=54.35 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 306
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.20 E-value=0.0034 Score=56.26 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=18.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++.|+|..|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999866655
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.18 E-value=0.011 Score=53.40 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999988
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.18 E-value=0.011 Score=53.88 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 309
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.17 E-value=0.41 Score=47.56 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=31.5
Q ss_pred hccCCCCCcEEEeecCCCCCeee-cc--CCCCCCCccEEEEeccCCchhhhhhhhcccccee
Q 039831 486 SLCELHKLECLKLVNESKPSRMV-LS--EYQFPPSLIQLSLSNTELMEDLINSELETQVLQV 544 (545)
Q Consensus 486 ~l~~l~~L~~L~L~~~~~~~~L~-lP--~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~l~~ 544 (545)
.|.++.+|+.+.+.+ ..+. |+ .|.+|.+|+.+.|.++ ++......+.++..|+.
T Consensus 281 aF~~c~~L~~i~l~~----~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 281 LCSGCSNLTKVVMDN----SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTTTCTTCCEEEECC----TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ccccccccccccccc----cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 455566666666642 2221 23 5666777777777543 55556666666666653
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.16 E-value=0.011 Score=52.87 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.16 E-value=0.01 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.15 E-value=0.01 Score=56.04 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|+|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999987
No 313
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.15 E-value=0.014 Score=59.47 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=60.0
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEecCC-CCHHHHHHHHHHHhCCC------C
Q 039831 59 KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYV-KFYFDCLAWVRVSLL-YDFGKILEDIIKSVMPP------S 130 (545)
Q Consensus 59 ~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~ 130 (545)
++++.|..=. .-+-++|.|.+|+|||+|+..+.+ .+ +.+-+.++++-+++. ....++.+++...=... .
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~r 218 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSK 218 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCC
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCce
Confidence 3455554321 135689999999999999999887 33 223355777777755 44667777776542221 1
Q ss_pred C--ccccCCCCH------HHHHHHHHHhc---CCceEEEEEcCCCC
Q 039831 131 R--VRVIIGKDY------QFKKSILRDYL---TNKKYFIVLDDVFH 165 (545)
Q Consensus 131 ~--~~~~~~~~~------~~~~~~l~~~l---~~k~~LlVlDdv~~ 165 (545)
. .....+... ....-.+.+++ +++.+|+++||+-.
T Consensus 219 tvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 219 VALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1 001111111 12223344444 36899999999843
No 314
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.14 E-value=0.045 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+++++|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988876
No 315
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.13 E-value=0.045 Score=55.54 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+++|+|.+|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988887
No 316
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.11 E-value=0.081 Score=54.44 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=29.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYD 114 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 114 (545)
...+++|+|..|+|||||++.++. .++. ..+.+++.-.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhh-cCCeEEEecCcccc
Confidence 457999999999999999999987 3322 23455554334443
No 317
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.11 E-value=0.011 Score=57.58 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=26.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEec
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVS 110 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 110 (545)
+.+||+|.|-|||||||.|..++. .....=..+.-|...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 579999999999999998866655 222211235556655
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.10 E-value=0.01 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|+.|+||||+|+.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.09 E-value=0.012 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 320
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.08 E-value=0.041 Score=56.28 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=34.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEecCCC-CHHHHHHHHH
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYF-DCLAWVRVSLLY-DFGKILEDII 123 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~ 123 (545)
+.++|+|.+|+|||||+..+.. .....+ +.++++.+++.. ...+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 3588999999999999999988 343333 345666666554 3455555554
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.08 E-value=0.0085 Score=53.61 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 322
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.07 E-value=0.011 Score=55.64 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.06 E-value=0.0074 Score=53.32 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+.|.|.|++|+||||+|+.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.06 E-value=0.011 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 325
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.06 E-value=0.015 Score=56.67 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=36.9
Q ss_pred ceeeec----ccHHHHHHHHHcCCC-CcEEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEe
Q 039831 49 DISEFE----RGREKFFDLLIEGPS-GLSVVAILDSSGFDKTAFAADTYNNNYVK-FYFDCLAWVRV 109 (545)
Q Consensus 49 ~~vGr~----~~~~~i~~~L~~~~~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~ 109 (545)
+|++.. ..++.+.+++..... ....+.|+|.+|+|||+||.++++ ... ..-..+.++.+
T Consensus 125 ~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 125 DIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp GSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred hCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 666533 334445556654221 246788999999999999999998 443 32233455543
No 326
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.05 E-value=0.012 Score=58.98 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=34.8
Q ss_pred ceeeecccHHHHHHHHHc----------------------------CCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIE----------------------------GPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~----------------------------~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.++.++.|...+.. .......+.++|++|+|||++|+++++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 578998888888877620 011234688999999999999999998
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.03 E-value=0.0076 Score=53.51 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.|+|++|+||||+|+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.01 E-value=0.011 Score=53.42 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|+|.|+.|+||||+|+.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999988
No 329
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.01 E-value=0.031 Score=54.02 Aligned_cols=90 Identities=16% Similarity=0.009 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHH--HHHHHHHHhCCCCCccccCCCCHHHHHH-H
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGK--ILEDIIKSVMPPSRVRVIIGKDYQFKKS-I 146 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~ 146 (545)
..++++|+|.+|+||||++..++. .....=..+.++... ...... .+.......+....+.. ...++.++.. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~-~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVM-DGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECC-TTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcC-CCCCHHHHHHHH
Confidence 357999999999999999999887 333221234444432 222221 12233343332211100 1234444433 3
Q ss_pred HHHhcCCceEEEEEcCC
Q 039831 147 LRDYLTNKKYFIVLDDV 163 (545)
Q Consensus 147 l~~~l~~k~~LlVlDdv 163 (545)
+......+.=++|+|--
T Consensus 173 l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 173 EEKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHHTCCEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 33333234457888876
No 330
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.01 E-value=0.011 Score=53.83 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.01 E-value=0.013 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|.|+.|+||||+|+.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.98 E-value=0.012 Score=52.83 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 333
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.95 E-value=0.012 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.95 E-value=0.024 Score=51.45 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.013 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|+.|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.93 E-value=0.015 Score=54.45 Aligned_cols=37 Identities=8% Similarity=-0.093 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+.++............+|+|.|++|+||||+|+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 15 LNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344444333223467899999999999999999987
No 337
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.92 E-value=0.012 Score=53.37 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.91 E-value=0.013 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.91 E-value=0.0099 Score=54.02 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.|+|++|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.90 E-value=0.017 Score=50.67 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.90 E-value=0.014 Score=55.38 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 342
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.89 E-value=0.014 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 039831 73 VVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 343
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.87 E-value=0.037 Score=50.89 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=30.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc---c-ccceeEEEEecCCCCH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK---F-YFDCLAWVRVSLLYDF 115 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~ 115 (545)
-.+++|+|..|+|||||++.++...... . .-...+|+.-...+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4799999999999999999997521111 1 1234778875554443
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.85 E-value=0.0092 Score=53.11 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 345
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.84 E-value=0.039 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999998875
No 346
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.82 E-value=0.015 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|.|.|++|+||||+|+.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.81 E-value=0.019 Score=56.07 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHcC--CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 55 RGREKFFDLLIEG--PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 55 ~~~~~i~~~L~~~--~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+..+...+... .....+|+|.|..|+||||+|+.+..
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3334444444333 24567999999999999999999876
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.81 E-value=0.0098 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=17.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 349
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.80 E-value=0.014 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|+.|+||||+++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
No 350
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.77 E-value=0.052 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|.|+|++|+||||+|+.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 351
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.77 E-value=0.015 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|++.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 352
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.77 E-value=0.016 Score=57.48 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=28.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc-ce-eEEEEecCCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DC-LAWVRVSLLY 113 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~~~~ 113 (545)
-..++|+|.+|+|||||++.+.+ .+.... +. ++++-+++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCH
T ss_pred CcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCCh
Confidence 35789999999999999999887 333222 22 3456666543
No 353
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.76 E-value=0.017 Score=52.00 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|.|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999987
No 354
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.75 E-value=0.017 Score=56.28 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3468999999999999999999887
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.75 E-value=0.013 Score=52.63 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|++|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 356
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.75 E-value=0.047 Score=54.63 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeE-EEEecCCCCHHHHHHHHHHHhCCCCC--ccccCCCCHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLA-WVRVSLLYDFGKILEDIIKSVMPPSR--VRVIIGKDYQFKKSIL 147 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l 147 (545)
-.+++|+|+.|+||||+++.+.. .+.....+.+ ++. +.... .+..... .+..-..+.......+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e--~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIE--DPIEY---------VFKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEE--SSCCS---------CCCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEec--ccHhh---------hhccCceEEEeeecCCCHHHHHHHH
Confidence 57899999999999999999987 3322212333 332 11110 0000000 0000000112234577
Q ss_pred HHhcCCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 148 RDYLTNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 148 ~~~l~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+..+...+-.+++|.+.+ .+.+..+.... ..|..|+.|+...++..
T Consensus 203 ~~~L~~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp HHHTTSCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred HHHhhhCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 777877788999999987 65544433332 24667888888766444
No 357
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.74 E-value=0.012 Score=58.31 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.3
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+...+.... ..-|.|+|.+|+|||++|+++++
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 89999886665544444322 22388999999999999999988
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.73 E-value=0.016 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 359
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.73 E-value=0.012 Score=51.73 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 360
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.73 E-value=0.024 Score=52.13 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.+++...+... ...+|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 44444444332 4788999999999999999888873
No 361
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.72 E-value=0.012 Score=53.21 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 362
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.70 E-value=0.018 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.-.+++|+|..|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999987
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.66 E-value=0.025 Score=54.46 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 364
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.65 E-value=0.019 Score=53.80 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.63 E-value=0.05 Score=53.45 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=60.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYL 151 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 151 (545)
.+++|+|..|+|||||++.+.. .+. .-.+.+.+.-........ ......-... ........+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g--~~~-~~~g~i~i~~~~e~~~~~----------~~~~i~~~~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME--FIP-KEERIISIEDTEEIVFKH----------HKNYTQLFFG-GNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG--GSC-TTSCEEEEESSCCCCCSS----------CSSEEEEECB-TTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCc-CCCcEEEECCeecccccc----------chhEEEEEeC-CChhHHHHHHHHh
Confidence 4799999999999999999987 332 223455554211111000 0000000000 1223455677788
Q ss_pred CCceEEEEEcCCCCChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 152 TNKKYFIVLDDVFHYSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 152 ~~k~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
..++-++++|.+.. .+.++.+... ..+ +.-+|+||...++..
T Consensus 238 ~~~p~ilildE~~~-~e~~~~l~~~-~~g--~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 238 RMRPDRIILGELRS-SEAYDFYNVL-CSG--HKGTLTTLHAGSSEE 279 (330)
T ss_dssp TSCCSEEEECCCCS-THHHHHHHHH-HTT--CCCEEEEEECSSHHH
T ss_pred hhCCCEEEEcCCCh-HHHHHHHHHH-hcC--CCEEEEEEcccHHHH
Confidence 88888999999987 6666655433 211 223677776655433
No 366
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.62 E-value=0.017 Score=52.59 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.61 E-value=0.017 Score=50.48 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 368
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.61 E-value=0.021 Score=52.28 Aligned_cols=39 Identities=31% Similarity=0.268 Sum_probs=29.1
Q ss_pred ecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 53 FERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 53 r~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++..+++.+.+... ..++|+|+|.+|+|||||+..+..
T Consensus 14 ~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 14 NKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 334455555555433 478999999999999999988877
No 369
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.54 E-value=0.018 Score=54.30 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999996
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.53 E-value=0.022 Score=51.91 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 371
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.52 E-value=0.031 Score=55.65 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 57 REKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 57 ~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3444555544344678999999999999999988865
No 372
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.50 E-value=0.018 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.49 E-value=0.018 Score=51.55 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 374
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.48 E-value=0.023 Score=53.55 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=27.2
Q ss_pred HHHHHHHHHcC---CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 57 REKFFDLLIEG---PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 57 ~~~i~~~L~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++...+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444432 23467899999999999999999987
No 375
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.45 E-value=0.03 Score=52.18 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
+.-.-.|.+.+..++-+++||.--. +...-..+...+.. ...|..||++|.+..++.
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 3334566777778888999998755 12222222222221 112677888888877654
No 376
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.44 E-value=0.048 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988877
No 377
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.42 E-value=0.018 Score=51.86 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999987
No 378
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.41 E-value=0.22 Score=49.56 Aligned_cols=136 Identities=8% Similarity=0.061 Sum_probs=72.9
Q ss_pred hhccccCcEEecCCCCCCccc-HhhhcccccceeeecCc--cCCCCcccCcCCcccccccccccc-CCCchhhcCCCCCC
Q 039831 392 LCTLLNLETLEMPSSHIDQSP-EDIWMMQKLMHLNFGSI--TLPAPPKNYSSSLKNLIFTSALNP-SSCTLDILFRLPSV 467 (545)
Q Consensus 392 i~~L~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~--~lp~~~~~~~~~l~~L~~L~~~~~-~~~~~~~l~~l~~L 467 (545)
+....+|+.+.+..+ +..++ ..+....+|+.+.+..+ .+.... +..+.+|+.+.+... .......+..+++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~a---F~~~~~l~~i~l~~~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFL---LQNCTALKTLNFYAKVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTT---TTTCTTCCEEEECCCCSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccc---cceeehhccccccccceecccccccccccc
Confidence 444556666666543 34443 44566666776666433 232221 144555555543221 11122335667788
Q ss_pred CEEEEecccCccccch-hHhccCCCCCcEEEeecCCCCCee-ecc--CCCCCCCccEEEEeccCCchhhhhhhhccc
Q 039831 468 RTLRISGDLSYYQSGV-SKSLCELHKLECLKLVNESKPSRM-VLS--EYQFPPSLIQLSLSNTELMEDLINSELETQ 540 (545)
Q Consensus 468 ~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~L-~lP--~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~ 540 (545)
+.+.+.++. ...+ ..+|.++.+|+++.|. ..+ .|+ .|.+|.+|+.+.+..+ +.......+.++.
T Consensus 289 ~~i~l~~~~---i~~I~~~aF~~c~~L~~i~lp-----~~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSA---IETLEPRVFMDCVKLSSVTLP-----TALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTT---CCEECTTTTTTCTTCCEEECC-----TTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccc---cceehhhhhcCCCCCCEEEcC-----ccccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 888776543 2222 3567788888888884 222 223 5677777877777543 4444444455444
No 379
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.40 E-value=0.032 Score=52.14 Aligned_cols=123 Identities=11% Similarity=0.001 Sum_probs=64.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeE------------------EEEe----cCCCCH--------------
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLA------------------WVRV----SLLYDF-------------- 115 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------------------wv~~----~~~~~~-------------- 115 (545)
.+++|+|+.|+|||||.+.++.-.. ...+.+ +|.- -...++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 101 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV 101 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc
Confidence 7899999999999999999986211 111111 2110 000111
Q ss_pred --HHHHHHHHHHhCCCCC-ccccCCCCH-HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEE
Q 039831 116 --GKILEDIIKSVMPPSR-VRVIIGKDY-QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVL 187 (545)
Q Consensus 116 --~~~~~~i~~~l~~~~~-~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~ii 187 (545)
.+....++..++.... .......+. +...-.+...+..++-+++||.--. +...-..+...+.. ...|..||
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi 181 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1223445555554322 111122222 3344567778888888999999754 12222222222211 11255688
Q ss_pred EecCChhHHh
Q 039831 188 ILVTEPTLLT 197 (545)
Q Consensus 188 vTtR~~~v~~ 197 (545)
++|.+...+.
T Consensus 182 ~vtHd~~~~~ 191 (240)
T 2onk_A 182 HVTHDLIEAA 191 (240)
T ss_dssp EEESCHHHHH
T ss_pred EEeCCHHHHH
Confidence 8888866554
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.39 E-value=0.016 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 381
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.38 E-value=0.081 Score=51.94 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKS 125 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 125 (545)
-.++.|.|.+|+||||+|..++.+... .=..++|++.. -...++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 358899999999999999888774222 11346677653 4455665555444
No 382
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.37 E-value=0.032 Score=51.54 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHH
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLL 196 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~ 196 (545)
+...-.+...+..++-+++||.--. +...-..+...+.. ...|..||++|.+...+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 3344567777888888999999754 12222222222221 11267789999887655
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.36 E-value=0.042 Score=49.15 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.34 E-value=0.024 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999974
No 385
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.34 E-value=0.032 Score=53.25 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-C-CCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-D-QNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~-~~gs~iivTtR~~~v~~ 197 (545)
+...-.|...|..++-+++||.--. +...-..+...+.. . ..|..||++|.+...+.
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 4445567778888889999999755 12222222222221 1 12677888888866555
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.29 E-value=0.015 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 387
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.25 E-value=0.016 Score=58.69 Aligned_cols=91 Identities=11% Similarity=0.170 Sum_probs=52.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccc----eeEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCCH----
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFD----CLAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKDY---- 140 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~~---- 140 (545)
+-++|.|.+|+|||+|+.++++.... +-+ .++++-+++. ..+.++.+++...=..... .....+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34789999999999999999984333 222 4566666644 4566666665543100000 000111121
Q ss_pred --HHHHHHHHHhcC---CceEEEEEcCCC
Q 039831 141 --QFKKSILRDYLT---NKKYFIVLDDVF 164 (545)
Q Consensus 141 --~~~~~~l~~~l~---~k~~LlVlDdv~ 164 (545)
....-.+.++++ ++.+|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 112234566654 689999999984
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.24 E-value=0.02 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|.|.|+.|+||||+|+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 389
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.24 E-value=0.022 Score=52.37 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|.|.|++|+||||+|+.+++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 390
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.23 E-value=0.035 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 391
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.22 E-value=0.026 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.20 E-value=0.025 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+|+|.|+.|+||||+|+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999987
No 393
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.17 E-value=0.14 Score=53.25 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++|+|+|.+|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 394
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.17 E-value=0.035 Score=50.09 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 54 ERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 54 ~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..-+..+..++..-. ....+.|+|++|.||||+|.++++
T Consensus 42 ~~f~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 42 ITFLGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHH
Confidence 344666777665422 234688999999999999999988
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.16 E-value=0.023 Score=51.69 Aligned_cols=23 Identities=4% Similarity=-0.143 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 396
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.15 E-value=0.028 Score=51.54 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+||.|.|++|+||||.|+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999988
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.11 E-value=0.025 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998873
No 398
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.10 E-value=0.024 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.07 E-value=0.017 Score=54.39 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.05 E-value=0.013 Score=53.48 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 401
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.01 E-value=0.031 Score=54.36 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 402
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.99 E-value=0.043 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|..|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 403
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.99 E-value=0.042 Score=52.06 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 142 FKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 142 ~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
...-.|...+..++-+++||.--. +...-..+...+.. ...|..||++|.+.+.+.
T Consensus 165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 334466777788888999999765 12222222222211 122677999999877655
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.97 E-value=0.031 Score=50.94 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999987
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.97 E-value=0.027 Score=50.85 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999998
No 406
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.97 E-value=0.042 Score=51.29 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|..|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 407
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.96 E-value=0.026 Score=51.54 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 408
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.94 E-value=0.043 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|..|+|||||.+.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999977
No 409
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.93 E-value=0.027 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 410
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.92 E-value=0.033 Score=56.72 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=34.9
Q ss_pred ceeeecccHHHHHHHHHcC------------CCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEG------------PSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~------------~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.++.++.+...+... ....+-|.++|++|+||||+|++++.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 5789888888887766321 11235588999999999999999998
No 411
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.92 E-value=0.071 Score=51.36 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEecCCCCHHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFD-CLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
-.+++|+|.+|+|||||++.++.. +...-. .++|++... ...++...+....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 368999999999999999998873 322222 355665432 3445554554443
No 412
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.88 E-value=0.024 Score=52.18 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|.|.|++|+||||+|+.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 413
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.86 E-value=0.045 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 414
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.85 E-value=0.026 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|+|..|+|||||++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998876
No 415
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.82 E-value=0.029 Score=51.29 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.81 E-value=0.02 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=16.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHh-c
Q 039831 71 LSVVAILDSSGFDKTAFAADTY-N 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~-~ 93 (545)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 417
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.79 E-value=0.047 Score=52.02 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 143 KKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 143 ~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
..-.|.+.|..++-+++||..-. +...-..+...+.. ...|..||++|.+...+.
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 34456777778888999999865 12222223322221 123677899998877654
No 418
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.79 E-value=0.036 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 419
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.78 E-value=0.056 Score=57.88 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=36.2
Q ss_pred ceeeecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 49 DISEFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 8999998888888877764 4789999999999999999998
No 420
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.18 Score=53.76 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=67.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccc-cc-cc--eeEEEEec--CCC--CH--------------HHHHHHHHHHhCCC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVK-FY-FD--CLAWVRVS--LLY--DF--------------GKILEDIIKSVMPP 129 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~-F~--~~~wv~~~--~~~--~~--------------~~~~~~i~~~l~~~ 129 (545)
.+++|+|..|+|||||++.++.-.+.. +. .. .+.++.-. ..+ ++ ......++..++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998732111 10 00 12222100 000 11 12233444444433
Q ss_pred CC-ccccCCCCH-HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 130 SR-VRVIIGKDY-QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 130 ~~-~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
.. .......+. ++..-.|.+.|..++-+++||.--. +...-..+...+.. ...|..||++|.+...+.
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~ 532 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMAT 532 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 112223333 4445577888889999999999754 12111222222211 123667999999987766
No 421
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.73 E-value=0.071 Score=52.86 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccc-ce-eEEEEecCC
Q 039831 58 EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DC-LAWVRVSLL 112 (545)
Q Consensus 58 ~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~~~ 112 (545)
-++++.+..=. .-+-++|+|.+|+|||+|+..+.+ .+.... +. ++++-+++.
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN--GIAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCC
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHH--HHhhcCCCeEEEEEEeccC
Confidence 34556665432 235689999999999999999988 443222 22 345555543
No 422
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.70 E-value=0.032 Score=49.30 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999887
No 423
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.69 E-value=0.15 Score=53.55 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--Chh---hHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSE---MWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~---~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|.+.|..++-+++||.--. +.. ....+...+. . |..||++|.+...+.
T Consensus 143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~--~-g~tii~vsHdl~~~~ 201 (538)
T 3ozx_A 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL--K-NKYVIVVDHDLIVLD 201 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC--T-TSEEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEEeChHHHH
Confidence 3444567778888888999998765 122 1222222232 2 667888888877665
No 424
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.69 E-value=0.23 Score=52.99 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=68.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc-ccc--cc-eeEEEEec----CCCCHHHHH--------------HHHHHHhCC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYV-KFY--FD-CLAWVRVS----LLYDFGKIL--------------EDIIKSVMP 128 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~-~~~wv~~~----~~~~~~~~~--------------~~i~~~l~~ 128 (545)
-.+++|+|..|+|||||++.++.-... .+. +. .+.++.-. ...++.+.+ ..++..++.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999873211 111 11 23344211 111222222 233444444
Q ss_pred CCC-ccccCCCCH-HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC--CCCCcEEEEecCChhHHh
Q 039831 129 PSR-VRVIIGKDY-QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD--DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 129 ~~~-~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~ 197 (545)
... .......+. +...-.|...|..++-+++||.--. +...-..+...+.. ...|..||++|.+...+.
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~ 536 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 536 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 322 112222333 4445567788888889999999755 12222222222211 123667999999977666
No 425
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.67 E-value=0.05 Score=51.64 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|..|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 426
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.66 E-value=0.033 Score=54.56 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999988
No 427
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.58 E-value=0.028 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|..|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 428
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.56 E-value=0.056 Score=50.72 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 429
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.55 E-value=0.064 Score=55.09 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=50.0
Q ss_pred EEEEEEcCCCChHHHHH-HHHhcCcccccccce-eEEEEecCCC-CHHHHHHHHHHHhC--------CCCCccccCCCCH
Q 039831 72 SVVAILDSSGFDKTAFA-ADTYNNNYVKFYFDC-LAWVRVSLLY-DFGKILEDIIKSVM--------PPSRVRVIIGKDY 140 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~~~ 140 (545)
+-++|.|.+|+|||+|| ..+.+. .. -+. ++++-+++.. .+.++.+.+...=. ...........-.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999995 588883 32 343 4667777543 35555555443210 0000000111111
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 141 QFKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 141 ~~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
....-.+.+++ +++.+|+++||+-.
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 22223333443 48999999999744
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.53 E-value=0.036 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 431
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.52 E-value=0.056 Score=51.68 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|..|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.46 E-value=0.18 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 433
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.43 E-value=0.058 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|..|+|||||.+.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 434
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.42 E-value=0.044 Score=53.58 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 435
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.40 E-value=0.048 Score=50.71 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL 111 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 111 (545)
-.++.|.|.+|+||||||..++.. ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 358999999999999999877652 222223567777544
No 436
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.40 E-value=0.06 Score=55.28 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=51.1
Q ss_pred EEEEEEcCCCChHHHHH-HHHhcCcccccccce-eEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCC-HH----
Q 039831 72 SVVAILDSSGFDKTAFA-ADTYNNNYVKFYFDC-LAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKD-YQ---- 141 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~-~~---- 141 (545)
+-++|.|.+|+|||+|| ..+.+. .. -+. ++++-+++. ..+.++.+.+...=..... .....+.. ..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ--KG--QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT--TT--TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45889999999999996 578873 32 343 467777754 3456666666542110000 00001111 11
Q ss_pred -HHHHHHHHhc--CCceEEEEEcCCCC
Q 039831 142 -FKKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 142 -~~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
...-.+.+++ +++.+|+++||+-.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 1122344444 47899999999843
No 437
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.39 E-value=0.31 Score=49.94 Aligned_cols=71 Identities=17% Similarity=0.068 Sum_probs=42.1
Q ss_pred eecccHHHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHh
Q 039831 52 EFERGREKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 52 Gr~~~~~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
|...-...+-..+ .+=..-.++.|.|.+|+||||+|..++.+..... =..++|++.. -...++...++...
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3333444454444 3222346889999999999999988877322111 1257777754 34556666665443
No 438
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.31 E-value=0.047 Score=51.43 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...++.+.|.||+||||++..++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999999875
No 439
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.29 E-value=0.042 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+++|+|..|+|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 440
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.28 E-value=0.041 Score=50.41 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 441
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.25 E-value=0.071 Score=51.66 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC
Q 039831 69 SGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL 111 (545)
Q Consensus 69 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 111 (545)
...++|+|+|-||+||||+|..++. .....=..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCC
Confidence 3578999999999999999987776 3322212455666553
No 442
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.24 E-value=0.041 Score=50.22 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 443
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.23 E-value=0.044 Score=52.06 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCC-CCCCcEEEEecCChhHHh
Q 039831 141 QFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPD-DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 141 ~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 197 (545)
+...-.|...|..++-+++||.--. +...-+.+...+.. ...|..||++|.+...+.
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILD 228 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGG
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHH
Confidence 3344556677777888999999765 22222233322221 223778999998877554
No 444
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.19 E-value=0.096 Score=62.72 Aligned_cols=101 Identities=13% Similarity=-0.059 Sum_probs=60.8
Q ss_pred HHHHHHHHH-cCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCCCc-cc
Q 039831 57 REKFFDLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPSRV-RV 134 (545)
Q Consensus 57 ~~~i~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~ 134 (545)
..++-.+|. ..=...+.|.|+|++|+|||+||.++... ....=..+.|++....++... ++.++..-.. .-
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v 1484 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLC 1484 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEE
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhcee
Confidence 334555554 21123578999999999999999998873 222212477888888777665 3444422110 00
Q ss_pred cCCCCHHHHHHHHHHhcC-CceEEEEEcCCC
Q 039831 135 IIGKDYQFKKSILRDYLT-NKKYFIVLDDVF 164 (545)
Q Consensus 135 ~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 164 (545)
....+.++..+.+++..+ .+.-+||+|.+.
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 122234555655555543 467799999995
No 445
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.34 Score=51.59 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCC-ccccCCCCH-HHHHHHHHHhcCCceEEEEEcCCCC--Chh---hHHHHHhhCCCCCCCcEEEEec
Q 039831 118 ILEDIIKSVMPPSR-VRVIIGKDY-QFKKSILRDYLTNKKYFIVLDDVFH--YSE---MWSDVVELLPDDQNGSRVLILV 190 (545)
Q Consensus 118 ~~~~i~~~l~~~~~-~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~--~~~---~~~~l~~~~~~~~~gs~iivTt 190 (545)
....++..++.... .......+. +...-.|.+.|..++-+++||.--. +.. ....+...+. ..|..||++|
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vt 278 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVE 278 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG--TTTCEEEEEC
T ss_pred HHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH--hCCCEEEEEe
Confidence 34556666665432 112223333 3334566677777778999998765 122 2222333332 2356788899
Q ss_pred CChhHHh
Q 039831 191 TEPTLLT 197 (545)
Q Consensus 191 R~~~v~~ 197 (545)
.+...+.
T Consensus 279 Hdl~~~~ 285 (608)
T 3j16_B 279 HDLSVLD 285 (608)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 8877666
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.16 E-value=0.043 Score=50.51 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 447
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.16 E-value=0.19 Score=51.70 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEecCCCCHHHHHHHHH
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DCLAWVRVSLLYDFGKILEDII 123 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~ 123 (545)
-.++.|.|.+|+||||||..++.+ +.... ..++|++... ...++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 458999999999999999988873 32211 2577777543 3345554443
No 448
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.15 E-value=0.052 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999988876
No 449
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.15 E-value=0.023 Score=54.76 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.14 E-value=0.046 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|.|.|+.|+||||+|+.+++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999988
No 451
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.13 E-value=0.09 Score=53.93 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=51.5
Q ss_pred EEEEEEcCCCChHHHHH-HHHhcCcccccccce-eEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCC-HHH---
Q 039831 72 SVVAILDSSGFDKTAFA-ADTYNNNYVKFYFDC-LAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKD-YQF--- 142 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~-~~~--- 142 (545)
+-++|.|.+|+|||+|| ..+.|. .. -+. ++++-+++. ..+.++.+.+...=..... .....+.. ...
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQ--KG--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGG--GS--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHh--hc--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999995 578873 32 343 466777754 3456666666542211111 00011111 111
Q ss_pred --HHHHHHHhc--CCceEEEEEcCCCC
Q 039831 143 --KKSILRDYL--TNKKYFIVLDDVFH 165 (545)
Q Consensus 143 --~~~~l~~~l--~~k~~LlVlDdv~~ 165 (545)
..-.+.+++ +++.+|+++||+-.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 122344444 47899999999843
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.11 E-value=0.06 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 453
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.10 E-value=0.075 Score=50.28 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=26.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEec
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVS 110 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 110 (545)
++|+|.|-||+||||+|..++. .....=..++-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCC
Confidence 6888899999999999987776 332221245566654
No 454
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.10 E-value=0.072 Score=49.29 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
....|.|.|+.|+||||+++.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999998
No 455
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.05 E-value=0.72 Score=42.46 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=47.1
Q ss_pred EEEEEEcCCCChHHHHHHHHh-cCcccccccc-eeEEEEecCCCCHHHHHHHHHHHhCCCCC----------------cc
Q 039831 72 SVVAILDSSGFDKTAFAADTY-NNNYVKFYFD-CLAWVRVSLLYDFGKILEDIIKSVMPPSR----------------VR 133 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~-~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------~~ 133 (545)
+.+.|+|..|+||||+...+. +......... ..+.+..-......++.+.+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 578999999999998654443 2111111221 22322222222233444445444432211 00
Q ss_pred ccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 134 VIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 134 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
++-......+.+.+...+.+- -+||+|.+..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 112234566667776655444 4789999976
No 456
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.05 E-value=0.037 Score=56.47 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=53.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEecCC-CCHHHHHHHHHHHhCCCCC--ccccCCCCH------
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYF--DCLAWVRVSLL-YDFGKILEDIIKSVMPPSR--VRVIIGKDY------ 140 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~~------ 140 (545)
+-++|.|.+|+|||+|+.+++++....+.- +.++++-+++. ..+.++.+.+...=..... .....+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 457789999999999999998854432211 34666666654 4566777666643111100 000111111
Q ss_pred HHHHHHHHHhcC---CceEEEEEcCC
Q 039831 141 QFKKSILRDYLT---NKKYFIVLDDV 163 (545)
Q Consensus 141 ~~~~~~l~~~l~---~k~~LlVlDdv 163 (545)
....-.+.++++ ++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 222344555654 68999999996
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.03 E-value=0.048 Score=52.63 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.03 E-value=0.049 Score=53.00 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 459
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.93 E-value=0.079 Score=50.84 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=27.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSL 111 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 111 (545)
+++|+|.|-||+||||+|..++. .....=..++.|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~--~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 57899999999999999988876 3322212355666553
No 460
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.93 E-value=0.078 Score=52.94 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++++|+|+.|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999997
No 461
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.92 E-value=0.24 Score=51.58 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=35.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEecCCCCHHHHHHHHHHHh
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVKFYF-DCLAWVRVSLLYDFGKILEDIIKSV 126 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l 126 (545)
-.++.|.|.+|+||||||..++.+ ..... ..++|++... ...++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 358889999999999999888773 32221 2567777544 4556666665443
No 462
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.90 E-value=0.03 Score=56.76 Aligned_cols=93 Identities=11% Similarity=0.186 Sum_probs=52.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccc--------cccc-eeEEEEecCC-CCHHHHHHHHHHHhCCCCC---ccccCCC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVK--------FYFD-CLAWVRVSLL-YDFGKILEDIIKSVMPPSR---VRVIIGK 138 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~ 138 (545)
+-++|.|.+|+|||+|+.++++..... ++=+ .++++-+++. ..+.++.+++...=..... ....+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999998853331 1111 4556666644 4456666665442000000 0001111
Q ss_pred CHH-----HHHHHHHHhcC---CceEEEEEcCCC
Q 039831 139 DYQ-----FKKSILRDYLT---NKKYFIVLDDVF 164 (545)
Q Consensus 139 ~~~-----~~~~~l~~~l~---~k~~LlVlDdv~ 164 (545)
... ...-.+.++++ ++.+|+++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 222 12234566654 689999999984
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.90 E-value=0.073 Score=46.11 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.89 E-value=0.051 Score=50.49 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 465
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.84 E-value=0.049 Score=55.11 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999987
No 466
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.80 E-value=0.054 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999874
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.74 E-value=0.058 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.64 E-value=0.052 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 469
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.64 E-value=0.058 Score=47.74 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 039831 73 VVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.60 E-value=0.069 Score=45.68 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
+-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998774
No 471
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.58 E-value=0.061 Score=52.02 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999886
No 472
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.58 E-value=0.11 Score=46.53 Aligned_cols=84 Identities=13% Similarity=0.134 Sum_probs=48.4
Q ss_pred hhcCCCcccEEEccCC-CCC-----CCCccccCCCCCCEEEccCCCCCc-----cChhhhccccCcEEecCCCCCCcc--
Q 039831 345 FFKRFKYLRVLNMGSA-VLD-----QFPPGLENLYLLKYLKLNIPSLKC-----LPSLLCTLLNLETLEMPSSHIDQS-- 411 (545)
Q Consensus 345 ~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~l~~l-- 411 (545)
.+..-+.|+.|+|+++ .+. .+-..+..-+.|+.|+|++|.|+. +-+.+..-+.|++|+|++|.++.-
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445566777777764 554 123445556677777777777652 333344446677777777765532
Q ss_pred ---cHhhhcccccceeeecC
Q 039831 412 ---PEDIWMMQKLMHLNFGS 428 (545)
Q Consensus 412 ---p~~~~~L~~L~~L~l~~ 428 (545)
-..+..-+.|+.|++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 22333344566666653
No 473
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.53 E-value=0.094 Score=51.88 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=67.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccc-c--ccc----------------eeEEEEecCCC------CH----------
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNNNYVK-F--YFD----------------CLAWVRVSLLY------DF---------- 115 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~----------------~~~wv~~~~~~------~~---------- 115 (545)
-.+++|+|+.|+|||||.+.++.-.+.. + .|+ .+.+|. |.+ ++
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf--Q~~~l~p~ltV~eni~~~l~~ 107 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV--QEGVLFPHLTVYRNIAYGLGN 107 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEEC--TTCCCCTTSCHHHHHHTTSTT
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEe--CCCcCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998632110 0 011 122221 111 11
Q ss_pred --------HHHHHHHHHHhCCCCC-cccc-CCCCHHHHHHHHHHhcCCceEEEEEcCCCC--Chh----hHHHHHhhCCC
Q 039831 116 --------GKILEDIIKSVMPPSR-VRVI-IGKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSE----MWSDVVELLPD 179 (545)
Q Consensus 116 --------~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~----~~~~l~~~~~~ 179 (545)
.+-...++..++.... .... +-+.-++-.-.|.+.|..++-+++||.--. +.. .++.+....
T Consensus 108 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~-- 185 (359)
T 3fvq_A 108 GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL-- 185 (359)
T ss_dssp SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--
T ss_pred cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--
Confidence 1223445555544322 1111 222234445567788888888999999754 111 122232222
Q ss_pred CCCCcEEEEecCChhHHh
Q 039831 180 DQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 180 ~~~gs~iivTtR~~~v~~ 197 (545)
...|..||++|.+...+.
T Consensus 186 ~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 186 RANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHTTCEEEEECCCHHHHH
T ss_pred HhCCCEEEEEeCCHHHHH
Confidence 123677899998877665
No 474
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.53 E-value=0.11 Score=49.06 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 58 EKFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 58 ~~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.-+..|+........-|.++|++|.|||.+|.++++
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 345666655422345688999999999999999998
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.53 E-value=0.061 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.++.|+|.+|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999988875
No 476
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.45 E-value=0.11 Score=51.21 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=25.7
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 59 KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 59 ~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+.+-+........+|+|+|.+|+||||++..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34433333334578999999999999999988864
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.45 E-value=0.46 Score=53.18 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=66.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccccc-----eeEEEEecCC-------CCH-----------HHHHHHHHHHhCC
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVKFYFD-----CLAWVRVSLL-------YDF-----------GKILEDIIKSVMP 128 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~~~~~-------~~~-----------~~~~~~i~~~l~~ 128 (545)
.+++|+|..|+|||||.+.++.- .+. .++ ...+ +.+. .+. .+....++..++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 57899999999999999999841 111 011 1122 2211 111 2234455666655
Q ss_pred CCC--ccccC-CCCHHHHHHHHHHhcCCceEEEEEcCCCC--ChhhHHHHHhhCCCCCCCcEEEEecCChhHHh
Q 039831 129 PSR--VRVII-GKDYQFKKSILRDYLTNKKYFIVLDDVFH--YSEMWSDVVELLPDDQNGSRVLILVTEPTLLT 197 (545)
Q Consensus 129 ~~~--~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 197 (545)
... ..... -+..+...-.|.+.+..++-+++||.--+ +...-..+...+.. .|..||++|.+...+.
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHH
Confidence 311 11122 22334445566777778888999999765 12222223222222 3677999998877655
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.37 E-value=0.066 Score=48.66 Aligned_cols=85 Identities=8% Similarity=0.099 Sum_probs=47.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCC--------CHHHHHHHHHHHhCCCCCccccCCCCHHHHH
Q 039831 73 VVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLY--------DFGKILEDIIKSVMPPSRVRVIIGKDYQFKK 144 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 144 (545)
+|.|.|++|+||+|.|+.+++. | ....|+.++-+ ......+.++.+ . ...+.+-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~-g~~~istGdllR~~i~~~t~lg~~~~~~~~~---G------~lvpd~iv~ 65 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------K-GFVHISTGDILREAVQKGTPLGKKAKEYMER---G------ELVPDDLII 65 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------H-CCEEEEHHHHHHHHHHHTCHHHHHHHHHHHH---T------CCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------H-CCeEEcHHHHHHHHHHhcChhhhhHHHHHhc---C------CcCCHHHHH
Confidence 4678899999999999999882 3 22334422110 111111111111 1 123445667
Q ss_pred HHHHHhcCCceEEEEEcCCCCChhhHHHHH
Q 039831 145 SILRDYLTNKKYFIVLDDVFHYSEMWSDVV 174 (545)
Q Consensus 145 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~l~ 174 (545)
..+.+.+..... +|||.--....+.+.+.
T Consensus 66 ~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 66 ALIEEVFPKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp HHHHHHCCSSSC-EEEESCCCSHHHHHHHH
T ss_pred HHHHHhhccCCc-eEecCCchhHHHHHHHH
Confidence 778888876544 68898755244444443
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.34 E-value=0.27 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 480
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.31 E-value=0.062 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 481
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.30 E-value=0.069 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|+|+|.+|+||||+|..++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999988887
No 482
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.28 E-value=0.075 Score=46.93 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+.+|+|..|+|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999864
No 483
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.27 E-value=0.2 Score=53.02 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+++.|.|.+|.||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5888999999999999988876
No 484
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.20 E-value=0.075 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhc
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.20 E-value=0.079 Score=49.31 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
...|.|.|..|+||||+|+.+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36789999999999999999988
No 486
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.14 E-value=0.074 Score=50.57 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 039831 73 VVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999886
No 487
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.13 E-value=0.1 Score=46.91 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=29.6
Q ss_pred cEEEEEE-cCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHH
Q 039831 71 LSVVAIL-DSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFG 116 (545)
Q Consensus 71 ~~vv~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 116 (545)
+++|+|+ +-||+||||+|..++. .....=..++.|+.....+..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCCHH
Confidence 3688888 7899999999988877 333322246667766544443
No 488
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.13 E-value=0.13 Score=50.55 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCCChHHHHHHHHhc
Q 039831 59 KFFDLLIEGPSGLSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 59 ~i~~~L~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
.+.+-+...-....+++|+|.+|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444433323468999999999999999999874
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.11 E-value=0.17 Score=59.80 Aligned_cols=107 Identities=13% Similarity=-0.035 Sum_probs=65.4
Q ss_pred eecccHHHHHHHHH-cCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCCCC
Q 039831 52 EFERGREKFFDLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMPPS 130 (545)
Q Consensus 52 Gr~~~~~~i~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 130 (545)
+...-...+-..|. .+=..-+++.|+|.+|+||||||.+++.. ....=..++||+....++... +..++...
T Consensus 363 ~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~ 435 (1706)
T 3cmw_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDI 435 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCG
T ss_pred eeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCH
Confidence 33444455555553 11123468999999999999999888773 322224688998887776542 45554432
Q ss_pred Cc-cccCCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 039831 131 RV-RVIIGKDYQFKKSILRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 131 ~~-~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 165 (545)
.. .-.+..+.++..+.+....+ .+.-+||+|-+..
T Consensus 436 ~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 436 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred HHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 20 01123456666666655443 4566999999875
No 490
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.07 E-value=0.19 Score=45.84 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-..|.|.|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36788999999999999999988
No 491
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.05 E-value=0.069 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
.+++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999863
No 492
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.98 E-value=0.18 Score=55.29 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=57.8
Q ss_pred ceeeecccHHHHHHHHHcC-----------CCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHH
Q 039831 49 DISEFERGREKFFDLLIEG-----------PSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGK 117 (545)
Q Consensus 49 ~~vGr~~~~~~i~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 117 (545)
++.|.++.++++.+.+... -...+=|.++|++|.|||.+|+++++ .....| +.++ ..+
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~~~ 546 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GPE 546 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----HHH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----cch
Confidence 7788888888887776432 01234577999999999999999999 444333 3322 122
Q ss_pred HHHHHHHHhCCCCCccccCCCCHHHHHHHHHHhcCCceEEEEEcCCCC
Q 039831 118 ILEDIIKSVMPPSRVRVIIGKDYQFKKSILRDYLTNKKYFIVLDDVFH 165 (545)
Q Consensus 118 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 165 (545)
++.... ......+.......-+..++.|++|+++.
T Consensus 547 ----l~s~~v---------Gese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 547 ----LLTMWF---------GESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp ----HHTTTC---------SSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ----hhcccc---------chHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 222211 22334444444444456789999999864
No 493
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.92 E-value=0.1 Score=45.91 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999875
No 494
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.90 E-value=0.087 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 039831 72 SVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
+.|.|.|..|+||||||.++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6788999999999999999987
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.90 E-value=0.1 Score=46.09 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 039831 71 LSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 496
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.87 E-value=0.12 Score=45.04 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 039831 70 GLSVVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 70 ~~~vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998764
No 497
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.84 E-value=0.084 Score=47.72 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=22.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccc
Q 039831 72 SVVAILDSSGFDKTAFAADTYNNNYVK 98 (545)
Q Consensus 72 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 98 (545)
.+|+|.|+.|+||||+|+.++. +..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~--~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE--HYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH--HTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHH--HhC
Confidence 5899999999999999999998 444
No 498
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.83 E-value=0.22 Score=59.78 Aligned_cols=109 Identities=13% Similarity=-0.024 Sum_probs=67.6
Q ss_pred eeeecccHHHHHHHHH-cCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEecCCCCHHHHHHHHHHHhCC
Q 039831 50 ISEFERGREKFFDLLI-EGPSGLSVVAILDSSGFDKTAFAADTYNNNYVKFYFDCLAWVRVSLLYDFGKILEDIIKSVMP 128 (545)
Q Consensus 50 ~vGr~~~~~~i~~~L~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 128 (545)
..+...-..++-..|. .+=..-+++.|+|.+|+||||||.+++.. ....=..++|++....++... +..++.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGv 433 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGV 433 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCC
Confidence 4455555566666664 22123468999999999999999998873 322223578998877776542 445544
Q ss_pred CCCc-cccCCCCHHHHHHHHHHhcC-CceEEEEEcCCCC
Q 039831 129 PSRV-RVIIGKDYQFKKSILRDYLT-NKKYFIVLDDVFH 165 (545)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 165 (545)
.... .-.+..+.+++.+.++...+ .+.-+||+|-+..
T Consensus 434 d~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 434 DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp CTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred CHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 3220 01123456777666665442 4566999999864
No 499
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.77 E-value=0.13 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 039831 71 LSVVAILDSSGFDKTAFAADTYN 93 (545)
Q Consensus 71 ~~vv~I~G~gGiGKTtLa~~v~~ 93 (545)
-.+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 36899999999999999999987
No 500
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.76 E-value=0.08 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 039831 73 VVAILDSSGFDKTAFAADTYNN 94 (545)
Q Consensus 73 vv~I~G~gGiGKTtLa~~v~~~ 94 (545)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
Done!