BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039833
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 70 YGKNSFIWMGPGPIINITDPKIVREIFKK--HDIFQEQRS-SVAKLLVSGMVVYEGEQRL 126
YGK + G P++ ITDP +++ + K + +F +R + S + + E E+
Sbjct: 46 YGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISIAEDEEWK 105
Query: 127 KVKKLTTPHFRLDKLK 142
+++ L +P F KLK
Sbjct: 106 RLRSLLSPTFTSGKLK 121
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 70 YGKNSFIWMGPGPIINITDPKIVREIFKK--HDIFQEQRS-SVAKLLVSGMVVYEGEQRL 126
YGK + G P++ ITDP +++ + K + +F +R + S + + E E+
Sbjct: 47 YGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISIAEDEEWK 106
Query: 127 KVKKLTTPHFRLDKLK 142
+++ L +P F KLK
Sbjct: 107 RLRSLLSPTFTSGKLK 122
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 70 YGKNSFIWMGPGPIINITDPKIVREIFKK--HDIFQEQRS-SVAKLLVSGMVVYEGEQRL 126
YGK + G P++ ITDP +++ + K + +F +R + S + + E E+
Sbjct: 48 YGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISIAEDEEWK 107
Query: 127 KVKKLTTPHFRLDKLK 142
+++ L +P F KLK
Sbjct: 108 RLRSLLSPTFTSGKLK 123
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 41 TKDAESKPIGLSDNIAQPILPFHHHIITNYGKNSFIWMG--PGPIINITDPKIVREIFKK 98
+ D E+ +D A PI+ F H + +++ + M P P++N + K+ E F +
Sbjct: 9 SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQ 68
Query: 99 HDIFQE 104
+F E
Sbjct: 69 RLLFPE 74
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 37 LAKTTKDAESKPIGLS------DNIAQPILPFHHHIITNYGKNSFIWMGPGPIINITDPK 90
+A+ +D E +PIGL+ + Q + +H HII YGK G G + K
Sbjct: 71 IARAIRD-EFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGD----GFGAVW-----K 120
Query: 91 IVREIFKKHDIFQEQRSSVAKLLVS 115
+ +K D+ Q SS+AK L S
Sbjct: 121 THADDYKPEDL-QNISSSIAKRLAS 144
>pdb|1OY5|A Chain A, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|B Chain B, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|C Chain C, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
Length = 257
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 14 EKFIRDQGFSGNSYKVLLGDMRELAKTTKDAESKPIGLSDNI--AQPILPFHHHIITNYG 71
E I Q +V D+RE A + + GL + +PI + +++ NYG
Sbjct: 23 EYGIVKQAIKKGKVEVYPIDLREFAPKGQVDDVPYGGLPGMVLKPEPIYEAYDYVVENYG 82
Query: 72 KNSFIWMGPGPIINITDP-------KIVREIFKKHDIF 102
K P + IT+P K+V E+ KK I
Sbjct: 83 K---------PFVLITEPWGEKLNQKLVNELSKKERIM 111
>pdb|3L2K|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
pdb|3L2K|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
Length = 366
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 86 ITDPKIVREIFKKHDIFQEQRSSVAKLLVSG 116
+T P ++RE+ K+ ++ + + S+A++ + G
Sbjct: 207 VTTPPVLRELLKRPEVVLQMKQSLAQITLGG 237
>pdb|3HGU|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGU|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 86 ITDPKIVREIFKKHDIFQEQRSSVAKLLVSG 116
+T P ++RE+ K+ ++ + + S+A++ + G
Sbjct: 210 VTTPPVLRELLKRPEVVLQMKQSLAQITLGG 240
>pdb|3HGV|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGV|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 86 ITDPKIVREIFKKHDIFQEQRSSVAKLLVSG 116
+T P ++RE+ K+ ++ + + S+A++ + G
Sbjct: 210 VTTPPVLRELLKRPEVVLQXKQSLAQITLGG 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,565,416
Number of Sequences: 62578
Number of extensions: 169056
Number of successful extensions: 386
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 13
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)