Query 039834
Match_columns 100
No_of_seqs 125 out of 741
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:27:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 8E-37 1.7E-41 199.2 8.3 84 10-94 1-85 (85)
2 PF07983 X8: X8 domain; Inter 100.0 9.6E-30 2.1E-34 163.7 6.9 71 10-80 1-78 (78)
3 cd04366 IlGF_insulin_bombyxin_ 35.6 70 0.0015 18.0 3.2 34 21-57 4-41 (42)
4 PF09628 YvfG: YvfG protein; 28.5 37 0.00081 21.1 1.3 9 57-65 27-35 (68)
5 KOG3679 Predicted coiled-coil 22.2 72 0.0016 27.0 2.2 28 53-80 529-556 (802)
6 PF04255 DUF433: Protein of un 15.3 1.4E+02 0.003 17.2 1.9 15 16-30 42-56 (56)
7 KOG0044 Ca2+ sensor (EF-Hand s 15.1 64 0.0014 23.9 0.4 14 49-62 96-109 (193)
8 COG3779 Uncharacterized protei 13.8 91 0.002 22.3 0.9 18 4-21 97-114 (151)
9 PF15606 Toxin_55: Putative to 13.0 1.2E+02 0.0027 19.4 1.2 25 51-75 20-44 (77)
10 cd00101 IlGF_like Insulin/insu 10.2 3.6E+02 0.0077 14.7 3.3 36 21-57 4-40 (41)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=100.00 E-value=8e-37 Score=199.16 Aligned_cols=84 Identities=46% Similarity=1.047 Sum_probs=81.9
Q ss_pred eeeEeCCCCCHHHHHHHHHhhcCc-ccCcccCCCCCCCCCCCchhhhhHHHHHHHHHhCCCCCcccCCCceeEEecCCCC
Q 039834 10 TWCVAKPATSDQLLQSNIDFACQK-VDCSPIKSGGACFDPNTPMHHASFAMNLYYQNNGKTAASCDFNNSGLIVAANDPS 88 (100)
Q Consensus 10 ~wCV~~~~~~~~~l~~~ld~aCg~-~dC~~I~~~g~cys~ct~~~~aSya~N~YYq~~~~~~~aCdF~G~a~i~~~~~ps 88 (100)
+|||+|+++++++|+++|||||++ +||++|++||+||+||++++|||||||+|||++++...+|||+|.|+|++ .|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~-~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITT-TDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEe-cCCC
Confidence 599999999999999999999999 99999999999999999999999999999999999999999999999999 9999
Q ss_pred CCceec
Q 039834 89 FGSCTY 94 (100)
Q Consensus 89 ~~~C~~ 94 (100)
.++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 989986
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.96 E-value=9.6e-30 Score=163.73 Aligned_cols=71 Identities=44% Similarity=0.964 Sum_probs=62.6
Q ss_pred eeeEeCCCCCHHHHHHHHHhhcCc--ccCcccCCCCC-----CCCCCCchhhhhHHHHHHHHHhCCCCCcccCCCcee
Q 039834 10 TWCVAKPATSDQLLQSNIDFACQK--VDCSPIKSGGA-----CFDPNTPMHHASFAMNLYYQNNGKTAASCDFNNSGL 80 (100)
Q Consensus 10 ~wCV~~~~~~~~~l~~~ld~aCg~--~dC~~I~~~g~-----cys~ct~~~~aSya~N~YYq~~~~~~~aCdF~G~a~ 80 (100)
+|||+++++++++|+++|||||++ +||++|++||+ .||+|++++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 799999999999999999999999 99999999999 799999999999999999999999999999999996
No 3
>cd04366 IlGF_insulin_bombyxin_like IlGF_like family, insulin_bombyxin_like subgroup. Members include a number of peptides including insulin, insulin-like growth factors I and II, insect prothoracicotropic hormone (bombyxin), locust insulin-related peptide (LIRP), molluscan insulin-related peptides 1 to 5 (MIP), and C. elegans insulin-like peptides. With the exception of insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=35.64 E-value=70 Score=18.02 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCcccCcccCCCCC----CCCCCCchhhhhH
Q 039834 21 QLLQSNIDFACQKVDCSPIKSGGA----CFDPNTPMHHASF 57 (100)
Q Consensus 21 ~~l~~~ld~aCg~~dC~~I~~~g~----cys~ct~~~~aSy 57 (100)
+.|.+.|.++|+...-. ..|- |+.+|++.+-.+|
T Consensus 4 ~~L~~~L~~vC~~~~~~---~~gIvdeCC~~~Ct~~~L~~Y 41 (42)
T cd04366 4 RHLADTLALLCSEYNSP---RRGIVDECCRKSCTLDELLSY 41 (42)
T ss_pred HHHHHHHHHHhCCCCCC---CCChhhccCCCcCCHHHHHhh
Confidence 46888999999872221 1232 7999998876665
No 4
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=28.46 E-value=37 Score=21.07 Aligned_cols=9 Identities=56% Similarity=1.006 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 039834 57 FAMNLYYQN 65 (100)
Q Consensus 57 ya~N~YYq~ 65 (100)
-|||.||..
T Consensus 27 ~AmNaYYr~ 35 (68)
T PF09628_consen 27 HAMNAYYRS 35 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999975
No 5
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.24 E-value=72 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHhCCCCCcccCCCcee
Q 039834 53 HHASFAMNLYYQNNGKTAASCDFNNSGL 80 (100)
Q Consensus 53 ~~aSya~N~YYq~~~~~~~aCdF~G~a~ 80 (100)
..+-.-+-.||++++-..-+|.|.|.--
T Consensus 529 nelilrlqeyfekqgvkdfacsfsgsip 556 (802)
T KOG3679|consen 529 NELILRLQEYFEKQGVKDFACSFSGSIP 556 (802)
T ss_pred HHHHHHHHHHHHHcCcceeeeeccCCcc
Confidence 3455667899999999999999999754
No 6
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=15.33 E-value=1.4e+02 Score=17.22 Aligned_cols=15 Identities=13% Similarity=0.395 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHhh
Q 039834 16 PATSDQLLQSNIDFA 30 (100)
Q Consensus 16 ~~~~~~~l~~~ld~a 30 (100)
|.++.+++.++|.|+
T Consensus 42 p~Lt~~~i~aAl~ya 56 (56)
T PF04255_consen 42 PSLTLEDIRAALAYA 56 (56)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC
Confidence 446677788887775
No 7
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=15.09 E-value=64 Score=23.87 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.2
Q ss_pred CCchhhhhHHHHHH
Q 039834 49 NTPMHHASFAMNLY 62 (100)
Q Consensus 49 ct~~~~aSya~N~Y 62 (100)
=++.+++.|+|..|
T Consensus 96 Gt~eekl~w~F~ly 109 (193)
T KOG0044|consen 96 GTLEEKLKWAFRLY 109 (193)
T ss_pred CcHHHHhhhhheee
Confidence 37889999999988
No 8
>COG3779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=13.77 E-value=91 Score=22.31 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=14.3
Q ss_pred cCCCCceeeEeCCCCCHH
Q 039834 4 EVDTERTWCVAKPATSDQ 21 (100)
Q Consensus 4 ~~~~~~~wCV~~~~~~~~ 21 (100)
++..+..|||.++++++=
T Consensus 97 NVe~Gqsv~v~~dDISDW 114 (151)
T COG3779 97 NVEQGQSVCVPVDDISDW 114 (151)
T ss_pred eeecCcEEEEehhhhhhh
Confidence 566789999999887654
No 9
>PF15606 Toxin_55: Putative toxin 55
Probab=13.00 E-value=1.2e+02 Score=19.41 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.8
Q ss_pred chhhhhHHHHHHHHHhCCCCCcccC
Q 039834 51 PMHHASFAMNLYYQNNGKTAASCDF 75 (100)
Q Consensus 51 ~~~~aSya~N~YYq~~~~~~~aCdF 75 (100)
+.+...=.+|+|++.-++.+.-|++
T Consensus 20 I~~~v~~~~~~~~~~~GK~~drCd~ 44 (77)
T PF15606_consen 20 IVQQVYEIISDAFQSGGKAPDRCDV 44 (77)
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHH
Confidence 3556777899999999999999984
No 10
>cd00101 IlGF_like Insulin/insulin-like growth factor/relaxin family; insulin family of proteins. Members include a number of active peptides which are evolutionary related including insulin, relaxin, prorelaxin, insulin-like growth factors I and II, mammalian Leydig cell-specific insulin-like peptide (gene INSL3), early placenta insulin-like peptide (ELIP; gene INSL4), insect prothoracicotropic hormone (bombyxin), locust insulin-related peptide (LIRP), molluscan insulin-related peptides 1 to 5 (MIP), and C. elegans insulin-like peptides. Typically, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved
Probab=10.17 E-value=3.6e+02 Score=14.69 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=21.5
Q ss_pred HHHHHHHHhhcCcccCcccCCCCC-CCCCCCchhhhhH
Q 039834 21 QLLQSNIDFACQKVDCSPIKSGGA-CFDPNTPMHHASF 57 (100)
Q Consensus 21 ~~l~~~ld~aCg~~dC~~I~~~g~-cys~ct~~~~aSy 57 (100)
.+|-+++-++|+...=. ..--.. |+.+|+..+-++|
T Consensus 4 ~~Lv~~l~~vC~~~~~~-~giv~eCC~~~Ct~~~L~~Y 40 (41)
T cd00101 4 RELVRALIFVCGDRGFY-RGIVDECCFRGCTLRELASY 40 (41)
T ss_pred HHHHHHHHHhcCCCCCc-CCcccccCCCCCChHHHHhh
Confidence 46788889999872111 100111 7899987765554
Done!