Query 039834
Match_columns 100
No_of_seqs 125 out of 741
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jon_A Beta-1,3-glucanase; oli 100.0 2.7E-40 9.3E-45 221.0 11.4 92 6-98 8-100 (101)
2 2w61_A GAS2P, glycolipid-ancho 99.9 5.1E-28 1.7E-32 198.6 4.8 86 9-96 396-493 (555)
3 2v33_A E1 envelope glycoprotei 50.7 3.5 0.00012 26.4 0.1 24 74-98 20-43 (91)
4 2gsv_A Hypothetical protein YV 28.6 23 0.00079 21.6 1.3 9 57-65 28-36 (80)
5 3j0f_E E1 envelope glycoprotei 27.6 31 0.001 27.5 2.1 25 74-99 311-335 (439)
6 1i9w_A Fusion protein E1; enve 23.5 41 0.0014 26.4 2.1 24 74-98 311-334 (390)
7 1b9g_A Protein (growth factor 22.4 61 0.0021 18.6 2.3 36 21-57 8-47 (57)
8 3j0c_A E1 envelope glycoprotei 21.0 31 0.001 27.5 1.0 25 74-99 311-335 (442)
9 3muu_A Structural polyprotein; 16.4 48 0.0017 28.2 1.2 24 74-98 671-694 (750)
10 3n40_F E1 envelope glycoprotei 16.3 37 0.0013 26.6 0.5 24 74-98 313-336 (393)
No 1
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Probab=100.00 E-value=2.7e-40 Score=220.99 Aligned_cols=92 Identities=45% Similarity=1.067 Sum_probs=88.4
Q ss_pred CCCceeeEeCCCCCHHHHHHHHHhhcCc-ccCcccCCCCCCCCCCCchhhhhHHHHHHHHHhCCCCCcccCCCceeEEec
Q 039834 6 DTERTWCVAKPATSDQLLQSNIDFACQK-VDCSPIKSGGACFDPNTPMHHASFAMNLYYQNNGKTAASCDFNNSGLIVAA 84 (100)
Q Consensus 6 ~~~~~wCV~~~~~~~~~l~~~ld~aCg~-~dC~~I~~~g~cys~ct~~~~aSya~N~YYq~~~~~~~aCdF~G~a~i~~~ 84 (100)
..+++|||+|+++++++|+++|||||++ +||++|++||+||+||++++|||||||+|||++++..++|||+|+|+|++
T Consensus 8 ~~~~~wCVak~~~~~~~l~~~ldyACg~gaDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~- 86 (101)
T 2jon_A 8 KAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTN- 86 (101)
T ss_dssp CCCSCEEEECTTSCHHHHHHHHHHHTTTSSSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEES-
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHcCCCCCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEee-
Confidence 3468999999999999999999999999 89999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCceecCCCC
Q 039834 85 NDPSFGSCTYPGPE 98 (100)
Q Consensus 85 ~~ps~~~C~~~~~~ 98 (100)
+|||.++|+|+++.
T Consensus 87 ~dPS~g~C~f~~~~ 100 (101)
T 2jon_A 87 TNPSYGACNFPSGS 100 (101)
T ss_dssp SCCCCSSSCCCCSC
T ss_pred cCCCCCceecCCCC
Confidence 99999999999865
No 2
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*
Probab=99.94 E-value=5.1e-28 Score=198.60 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=81.5
Q ss_pred ceeeEeCCC-CCHHHHHHHHHhhcCcccCcccCCCCC-----CCCCCCchhhhhHHHHHHHHHhCCCCCcccCCCc----
Q 039834 9 RTWCVAKPA-TSDQLLQSNIDFACQKVDCSPIKSGGA-----CFDPNTPMHHASFAMNLYYQNNGKTAASCDFNNS---- 78 (100)
Q Consensus 9 ~~wCV~~~~-~~~~~l~~~ld~aCg~~dC~~I~~~g~-----cys~ct~~~~aSya~N~YYq~~~~~~~aCdF~G~---- 78 (100)
++|||++++ +++++|+++||||||++||++|++||+ ||+||++++|||||||+|||++++..++|||+|+
T Consensus 396 ~~~Cv~~~~~~~~~~l~~~~~yaC~~~dC~~I~~~g~~g~yG~~~~~~~~~~~Sya~n~yyq~~~~~~~~C~F~g~~~~~ 475 (555)
T 2w61_A 396 ILPCEIVPFGAESGKYEEYFSYLCSKVDCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLYCKIGANDRHCPLNDKNVYF 475 (555)
T ss_dssp HCSEEECCTTCCGGGHHHHHHHHTTTSCGGGGCEETTTTEECTTTTSCHHHHHHHHHHHHHHHHCCCSSCCSCCCTTEEE
T ss_pred CCeeecCCCCCCHHHHHHHHHHHhCcCCCccccCCCcCCCccccCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCcccc
Confidence 589999999 999999999999999999999999999 6999999999999999999999999999999999
Q ss_pred --eeEEecCCCCCCceecCC
Q 039834 79 --GLIVAANDPSFGSCTYPG 96 (100)
Q Consensus 79 --a~i~~~~~ps~~~C~~~~ 96 (100)
|+|+ ++||.++|+|+.
T Consensus 476 ~~a~~~--~~~s~~~C~~~~ 493 (555)
T 2w61_A 476 NLESLQ--PLTSESICKNVF 493 (555)
T ss_dssp CGGGGS--CCCTTCTTHHHH
T ss_pred cceEEE--eCCCCCchHhHH
Confidence 9997 467899999864
No 3
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=50.74 E-value=3.5 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=18.3
Q ss_pred cCCCceeEEecCCCCCCceecCCCC
Q 039834 74 DFNNSGLIVAANDPSFGSCTYPGPE 98 (100)
Q Consensus 74 dF~G~a~i~~~~~ps~~~C~~~~~~ 98 (100)
||+|.|+|+...|- .|.|..++..
T Consensus 20 DFGGvatl~Y~a~k-~GkCaVHs~S 43 (91)
T 2v33_A 20 DFGGVLTLTYKTNK-NGDCSVHSHS 43 (91)
T ss_dssp EEEEEEEEEEEESS-CEEEEEECCC
T ss_pred CCCCeEEEEEecCC-CccceeeccC
Confidence 89999999983444 5889877654
No 4
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=28.58 E-value=23 Score=21.62 Aligned_cols=9 Identities=56% Similarity=0.973 Sum_probs=7.5
Q ss_pred HHHHHHHHH
Q 039834 57 FAMNLYYQN 65 (100)
Q Consensus 57 ya~N~YYq~ 65 (100)
-|||.||..
T Consensus 28 hAmNaYYrs 36 (80)
T 2gsv_A 28 HAMNSYYRS 36 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999975
No 5
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=27.63 E-value=31 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=18.9
Q ss_pred cCCCceeEEecCCCCCCceecCCCCC
Q 039834 74 DFNNSGLIVAANDPSFGSCTYPGPEQ 99 (100)
Q Consensus 74 dF~G~a~i~~~~~ps~~~C~~~~~~~ 99 (100)
||+|.|+|+. ..-..|.|..++..+
T Consensus 311 DfGGvatl~Y-~~~k~GkCaVHs~S~ 335 (439)
T 3j0f_E 311 DFGGMATLQY-VSDREGQCPVHSHSS 335 (439)
T ss_pred CcCceEEEEE-ecCCCcccceeccCC
Confidence 8999999998 344468998776543
No 6
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=23.51 E-value=41 Score=26.38 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=18.3
Q ss_pred cCCCceeEEecCCCCCCceecCCCC
Q 039834 74 DFNNSGLIVAANDPSFGSCTYPGPE 98 (100)
Q Consensus 74 dF~G~a~i~~~~~ps~~~C~~~~~~ 98 (100)
||+|.|+|+. ..-..|.|..++..
T Consensus 311 DfGGvat~~Y-~~~k~GkCaVHs~S 334 (390)
T 1i9w_A 311 DFGGVLTLTY-KTNKNGDCSVHSHS 334 (390)
T ss_pred CcCceEEEEE-ecCCCcccceeccC
Confidence 8999999998 34446889877654
No 7
>1b9g_A Protein (growth factor IGF-1); NMR {Homo sapiens} SCOP: g.1.1.1
Probab=22.42 E-value=61 Score=18.65 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCcccCcccCCCCC----CCCCCCchhhhhH
Q 039834 21 QLLQSNIDFACQKVDCSPIKSGGA----CFDPNTPMHHASF 57 (100)
Q Consensus 21 ~~l~~~ld~aCg~~dC~~I~~~g~----cys~ct~~~~aSy 57 (100)
+.|-++|.++|+...= -....|- |+.+|+..+-.+|
T Consensus 8 ~~L~~aL~~vC~~rgf-~~~k~GIvdECC~~~Ct~~~L~~Y 47 (57)
T 1b9g_A 8 AELVDALQFVCGDRGF-YFNKPGIVDECCFRSCDLRRLEMY 47 (57)
T ss_dssp TTHHHHHHTTCSSSSC-CTTCCSHHHHHTTSSCCSSSGGGT
T ss_pred HHHHHHHHHHHcCCCc-cCCCCCcHhhhcCCCCCHHHHHHh
Confidence 4588899999986200 0112233 8999988776665
No 8
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=21.03 E-value=31 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.9
Q ss_pred cCCCceeEEecCCCCCCceecCCCCC
Q 039834 74 DFNNSGLIVAANDPSFGSCTYPGPEQ 99 (100)
Q Consensus 74 dF~G~a~i~~~~~ps~~~C~~~~~~~ 99 (100)
||+|.|+|+...|- .|.|..++..+
T Consensus 311 DfGGvatl~Y~~~k-~GkCaVHs~S~ 335 (442)
T 3j0c_A 311 DFGGIATVKYSASK-SGKCAVHVPSG 335 (442)
T ss_dssp SCCEEEEEEEEESS-CEEEEEECSST
T ss_pred CcCceEEEEEecCC-CcccceeccCC
Confidence 89999999984444 58898776543
No 9
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein; HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A 3muw_U 1z8y_A 1z8y_B
Probab=16.43 E-value=48 Score=28.17 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=17.4
Q ss_pred cCCCceeEEecCCCCCCceecCCCC
Q 039834 74 DFNNSGLIVAANDPSFGSCTYPGPE 98 (100)
Q Consensus 74 dF~G~a~i~~~~~ps~~~C~~~~~~ 98 (100)
||+|.|+|+...|- .|.|..++-.
T Consensus 671 DfGG~atl~y~~~k-~GkCavHs~S 694 (750)
T 3muu_A 671 DFGGMATLQYVSDR-EGQCPVHSHS 694 (750)
T ss_dssp SSCEEEEEEEEESS-CCCEECEESS
T ss_pred CcCceEEEEEecCC-CcccceeccC
Confidence 89999999874444 5888776543
No 10
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=16.27 E-value=37 Score=26.62 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=17.9
Q ss_pred cCCCceeEEecCCCCCCceecCCCC
Q 039834 74 DFNNSGLIVAANDPSFGSCTYPGPE 98 (100)
Q Consensus 74 dF~G~a~i~~~~~ps~~~C~~~~~~ 98 (100)
||+|.|+|+...+- .|.|..++..
T Consensus 313 DfGGvat~~Y~~~k-~GkCaVHs~S 336 (393)
T 3n40_F 313 DFGGVAIIKYAASK-KGKCAVHSMT 336 (393)
T ss_dssp SCCEEEEEEEEESS-CEEEEEEESS
T ss_pred CcCceEEEEEecCC-CcccceeccC
Confidence 89999999983444 5889776544
Done!