BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039837
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 345 bits (885), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 188/531 (35%), Positives = 300/531 (56%), Gaps = 13/531 (2%)
Query: 19 EEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAK 78
EE IFRS+ P + +P+N+ L +VL++ ++ K + +G YTYA V R A
Sbjct: 5 EEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVAS 64
Query: 79 ALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKL 138
L +G+++G V+++ LP+ E+ + LG G + + ANP + +EL K A+ AKL
Sbjct: 65 GLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKL 124
Query: 139 IVSYAPIYEKVKGLGLPI---IVLGEERIESAINWSELIEAADKAGN--NFSNDDDV--- 190
+++ A YEKVK ++ + + +++SEL +A + + S DD V
Sbjct: 125 LITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALP 184
Query: 191 -KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFHIYGITGICCA 247
+ KGVMLTH+ L+ ++ + P + + L ++P FHIY + I
Sbjct: 185 YSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC 244
Query: 248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
LR +++M +FE+ + L + ++V+ AP+VPP+++S+ K P +D+ DLS LR +
Sbjct: 245 GLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS--SLRMI 302
Query: 308 MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP 367
+ + KFP ++ + YG+TE + A K + G ++
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362
Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXX 427
N E+K ++PETG SLP N PGE+C+R +M+GY N+ E T+RTIDK GWLHT
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422
Query: 428 XXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
KELIKYKGFQVAPAELEA+L+ HP + DAAVV L DE+AGE+P A VV
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482
Query: 488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
+ ++ +ED+I +++ V YK+++ + F++ IPK+ SGKI+R+ LK+K+
Sbjct: 483 SEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 184/542 (33%), Positives = 295/542 (54%), Gaps = 23/542 (4%)
Query: 17 HDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGF 76
++ + IFRS+ P + +P +++L D++ Q+ +A K + +G YTY+ V +R
Sbjct: 42 NNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQI 101
Query: 77 AKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADA 136
A LG+ + VV+++LPN E+ + L G + ANP +E+ KQ A++
Sbjct: 102 AANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNT 161
Query: 137 KLIVSYAPIYEKVKGL----GLPIIVLGEERI----ESAINWSELIEAADKAGN-----N 183
KLI++ A +K+K L G+ I+ + + E + ++EL ++ +A
Sbjct: 162 KLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVE 221
Query: 184 FSNDDDV----KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMI--GQVTTLGLIPFFH 237
S DD V + KGVMLTH+ LV ++ + P + L ++P FH
Sbjct: 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281
Query: 238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEF 297
IY + I LR +++M +FE+ L+ + +VT AP+VPPI+L++ K +++
Sbjct: 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKY 341
Query: 298 DLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHS-CITLTYGDPANPSAG 356
DLS +R V + + KFP ++ + YG+TE + ++ G P
Sbjct: 342 DLS--SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFP- 398
Query: 357 SKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNG 416
K + G ++ N E+K ++P+TG SL N PGE+C+R +M+GY NN TA TIDK+G
Sbjct: 399 VKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 417 WLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE 476
WLHT KELIKYKGFQVAPAELEA+L+ HP + D AVV++ +E
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEA 518
Query: 477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
AGE+P A VV + +++ SEDD+ FV+ V YK++ + F + IPK+ SGKI+R+ L+
Sbjct: 519 AGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRA 578
Query: 537 KM 538
K+
Sbjct: 579 KL 580
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 162/554 (29%), Positives = 264/554 (47%), Gaps = 34/554 (6%)
Query: 12 PLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYA---DKVAFVEAVSGKAYTYAQ 68
PL + D ++I + P P+ E+ T + + + + YA +AF +A TYA+
Sbjct: 2 PLGSMEDAKNIKKGPAPFYPL-EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAE 60
Query: 69 VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELK 128
+ A+A++ GL ++V N ++ + LG + G + AN + EL
Sbjct: 61 YFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELL 120
Query: 129 KQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESAINWSELIEAADKAGNN 183
++ + ++ +K+ + LPII ++ + + + S
Sbjct: 121 NSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPG 180
Query: 184 FSNDDDVKQT---------------DLWISKGVMLTHRNLVANLCSTLFSVVP-EMIGQV 227
F+ D V ++ + KGV L HR + ++I
Sbjct: 181 FNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 240
Query: 228 TTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
L ++PF H +G+ L +VV+M RFE FL +L +++ A +VP +
Sbjct: 241 AILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 299
Query: 288 LVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
K ++D++DLS L + + + K+F +++ YGLTE + L
Sbjct: 300 FAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
P K +VG ++P E K ++ +TGK+L N GELCVR +M GY NN E
Sbjct: 357 ----TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 412
Query: 408 TARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDA 467
T IDK+GWLH+ K LIKYKG+QVAPAELE+ILL HP++ DA
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 472
Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHS 526
V LPD++AGE+PAA VV+ +E +I+D+VAS V T KK+R + FVD +PK +
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLT 532
Query: 527 GKIMRRILKDKMLE 540
GK+ R +++ +++
Sbjct: 533 GKLDARKIREILIK 546
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 164/554 (29%), Positives = 264/554 (47%), Gaps = 34/554 (6%)
Query: 12 PLAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYA---DKVAFVEAVSGKAYTYAQ 68
PL + D ++I + P P+ E+ T + + + + YA +AF +A TYA+
Sbjct: 2 PLGSMEDAKNIKKGPAPFYPL-EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAE 60
Query: 69 VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELK 128
+ A+A++ GL ++V N ++ + LG + G + AN + EL
Sbjct: 61 YFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELL 120
Query: 129 KQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESAINWSELIEAADKAGNN 183
++ + ++ +K+ + LPII ++ + + + S
Sbjct: 121 NSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPG 180
Query: 184 FSNDDDVKQT---------------DLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVT 228
F+ D V ++ + KGV L HR L + I T
Sbjct: 181 FNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDT 240
Query: 229 T-LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILS 287
L ++PF H +G+ L + +VV+M RFE FL +L +++ A +VP +
Sbjct: 241 AILSVVPFHHGFGMF-TTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 299
Query: 288 LVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTY 347
L K ++D++DLS L + + + K+F +++ YGLTE + L
Sbjct: 300 LAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
P K +VG ++P E K ++ +TGK+L N GEL VR +M GY NN E
Sbjct: 357 ----TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 408 TARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDA 467
T IDK+GWLH+ K LIKYKG QVAPAELE+ILL HP++ DA
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDA 472
Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHS 526
V LPD++AGE+PAA VV+ +E +I+D+VAS V T KK+R + FVD +PK +
Sbjct: 473 GVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLT 532
Query: 527 GKIMRRILKDKMLE 540
GK+ R +++ +++
Sbjct: 533 GKLDARKIREILIK 546
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 244/510 (47%), Gaps = 30/510 (5%)
Query: 53 VAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112
+AF +A TYA+ + A+A++ GL ++V N ++ + LG + G
Sbjct: 40 IAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIG 99
Query: 113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESA 167
+ AN + EL ++ + ++ +K+ + LPII ++ + + +
Sbjct: 100 VAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ 159
Query: 168 INWSELIEAADKAGNNFSNDDDVKQT---------------DLWISKGVMLTHRNLVANL 212
S F+ D V ++ + KGV L HR
Sbjct: 160 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF 219
Query: 213 CSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
+ ++I L ++PF H +G+ L +VV+M RFE FL +L
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQ 278
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
+++ A +VP + K ++D++DLS L + + + K+F +
Sbjct: 279 DYKIQSALLVPTLFSFFAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGI 336
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC 391
++ YGLTE + L P K +VG ++P E K ++ +TGK+L N GELC
Sbjct: 337 RQGYGLTETTSAILI-----TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELC 391
Query: 392 VRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAP 451
VR +M GY NN E T IDK+GWLH+ K LIKYKG+QVAP
Sbjct: 392 VRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451
Query: 452 AELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKK 511
AELE+ILL HP++ DA V LPD++AGE+PAA VV+ +E +I+D+VAS V T KK
Sbjct: 452 AELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK 511
Query: 512 VR-VLHFVDGIPKSHSGKIMRRILKDKMLE 540
+R + FVD +PK +GK+ R +++ +++
Sbjct: 512 LRGGVVFVDEVPKGLTGKLDARKIREILIK 541
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 244/510 (47%), Gaps = 30/510 (5%)
Query: 53 VAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112
+AF +A TYA+ + A+A++ GL ++V N ++ + LG + G
Sbjct: 40 IAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIG 99
Query: 113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESA 167
+ AN + EL ++ + ++ +K+ + LPII ++ + + +
Sbjct: 100 VAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ 159
Query: 168 INWSELIEAADKAGNNFSNDDDVKQT---------------DLWISKGVMLTHRNLVANL 212
S F+ D V ++ + KGV L HR
Sbjct: 160 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRF 219
Query: 213 CSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
+ ++I L ++PF H +G+ L +VV+M RFE FL +L
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQ 278
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
+++ A +VP + K ++D++DLS L + + + K+F +
Sbjct: 279 DYKIQSALLVPTLFSFFAKSTLIDKYDLSNLH--EIASGGAPLSKEVGEAVAKRFHLPGI 336
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELC 391
++ YGLTE + L P K +VG ++P E K ++ +TGK+L N GELC
Sbjct: 337 RQGYGLTETTSAILI-----TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELC 391
Query: 392 VRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAP 451
VR +M GY NN E T IDK+GWLH+ K LIKYKG+QVAP
Sbjct: 392 VRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451
Query: 452 AELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKK 511
AELE+ILL HP++ DA V LPD++AGE+PAA VV+ +E +I+D+VAS V T KK
Sbjct: 452 AELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKK 511
Query: 512 VR-VLHFVDGIPKSHSGKIMRRILKDKMLE 540
+R + FVD +PK +GK+ R +++ +++
Sbjct: 512 LRGGVVFVDEVPKGLTGKLDARKIREILIK 541
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 201 bits (512), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 162/553 (29%), Positives = 261/553 (47%), Gaps = 37/553 (6%)
Query: 14 AAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYAD---KVAFVEAVSGKAYTYAQVA 70
+ D ++I P P+ E+ T + + + + YA +AF +A + TY++
Sbjct: 33 GSMEDAKNIMHGPPPFYPL-EDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYF 91
Query: 71 RDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQ 130
A+ ++ GL + V N ++ + G + G + N + EL
Sbjct: 92 EMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNS 151
Query: 131 VDAADAKLIVSYAPIYEKVKGL--GLPII---VLGEERIESAINWS--ELIEAADKAGNN 183
+ + ++ +K+ G+ LPII V+ + R + S IE+ AG N
Sbjct: 152 LSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFN 211
Query: 184 ---FSNDDDVKQT----------DLWISKGVMLTHRNLVANLCSTLFSVVP-EMIGQVTT 229
+ D ++T + KGV LTH+N+ V ++I
Sbjct: 212 EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAI 271
Query: 230 LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV 289
L +IPF H +G+ L ++V+M RFE FL +L +++ A +VP +
Sbjct: 272 LTVIPFHHGFGMF-TTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 330
Query: 290 KDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLT-Y 347
K +VD++DLS L + + + K+F +++ YGLTE S I +T
Sbjct: 331 KSTLVDKYDLSNLH--EIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPR 388
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
G P A K ++P K ++ +TGK+L N GELCV+ +M+GY NN E
Sbjct: 389 GRDDKPGACGK------VVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEA 442
Query: 408 TARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDA 467
T+ IDK+GWLH+ K LIKYKG+QV PAELE+ILL HP + DA
Sbjct: 443 TSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDA 502
Query: 468 AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHS 526
V +PD +AGE+PAA VV+ +E ++MD+VA V K++R + FVD +PK +
Sbjct: 503 GVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLT 562
Query: 527 GKIMRRILKDKML 539
GKI R +++ ++
Sbjct: 563 GKIDARKIREILM 575
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 198 bits (503), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 162/549 (29%), Positives = 257/549 (46%), Gaps = 41/549 (7%)
Query: 17 HDEEHIFRSRHPAVPVPEN---VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
++E+I P P+ E L ++ + A+L A +AF AV+G Y+YA+ +
Sbjct: 5 ENDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGA--IAFTNAVTGVDYSYAEYLEKS 62
Query: 74 RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
KAL++ GL + + N E+ I + + G + N EL +
Sbjct: 63 XXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGI 122
Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERI-ESAINW------SELIEAADKAGNNFSN 186
+ ++ S +KV + + + I +S +++ I+ G S+
Sbjct: 123 SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASS 182
Query: 187 D-----DDVKQTDLWIS--------KGVMLTHRNLVANLCSTLFSVVPEMIGQVT-TLGL 232
D +Q L ++ KGV LTH N+V + + T L +
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTV 242
Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
+PF H +G+ L +VVM+ +F+ FL L ++ T +VP + L K
Sbjct: 243 VPFHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 293 IVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPA 351
+++++DLS L + + + ++F V++ YGLTE S I +T
Sbjct: 302 LLNKYDLS--NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT----- 354
Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
P K + G ++P + K I+ +T KSL N GE+CV+ +M+GY NN E T
Sbjct: 355 -PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
ID+ GWLHT K LIKYKG+QV PAELE++LL HPS+ DA V
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKI- 529
+PD AGE+P A VV+ +E ++MD+VAS V+ K++R + FVD +PK +GKI
Sbjct: 474 VPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKID 533
Query: 530 ---MRRILK 535
+R ILK
Sbjct: 534 GRAIREILK 542
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/549 (29%), Positives = 257/549 (46%), Gaps = 41/549 (7%)
Query: 17 HDEEHIFRSRHPAVPVPEN---VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
++E+I P P+ E L ++ + A+L A +AF AV+G Y+YA+ +
Sbjct: 5 ENDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGA--IAFTNAVTGVDYSYAEYLEKS 62
Query: 74 RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
KAL++ GL + + N E+ I + + G + N EL +
Sbjct: 63 CXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGI 122
Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERI-ESAINW------SELIEAADKAGNNFSN 186
+ ++ S +KV + + + I +S +++ I+ G S+
Sbjct: 123 SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQASS 182
Query: 187 D-----DDVKQTDLWIS--------KGVMLTHRNLVANLCSTLFSVVPEMIGQVT-TLGL 232
D +Q L ++ KGV LTH N+V + + T L +
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTV 242
Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
+PF H +G+ L +VVM+ +F+ FL L ++ T +VP + L K
Sbjct: 243 VPFHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSE 301
Query: 293 IVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPA 351
+++++DLS L + + + ++F V++ YGLTE S I +T
Sbjct: 302 LLNKYDLS--NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT----- 354
Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
P K + G ++P + K I+ +T KSL N GE+CV+ +M+GY NN E T
Sbjct: 355 -PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
ID+ GWLHT K LIKYKG+QV PAELE++LL HPS+ DA V
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKI- 529
+PD AGE+P A VV+ +E ++MD+VAS V+ K++R + FVD +PK +GKI
Sbjct: 474 VPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKID 533
Query: 530 ---MRRILK 535
+R ILK
Sbjct: 534 GRAIREILK 542
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/549 (29%), Positives = 257/549 (46%), Gaps = 41/549 (7%)
Query: 17 HDEEHIFRSRHPAVPVPEN---VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
++E+I P P+ E L ++ + A+L A +AF AV+G Y+YA+ +
Sbjct: 5 ENDENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGA--IAFTNAVTGVDYSYAEYLEKS 62
Query: 74 RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
KAL++ GL + + N E+ I + + G + N EL +
Sbjct: 63 CXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGI 122
Query: 134 ADAKLIVSYAPIYEKVKGLGLPIIVLGEERI-ESAINW------SELIEAADKAGNNFSN 186
+ ++ S +KV + + + I +S +++ I+ G S+
Sbjct: 123 SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASS 182
Query: 187 D-----DDVKQTDLWIS--------KGVMLTHRNLVANLCSTLFSVVPEMIGQVT-TLGL 232
D +Q L ++ KGV LTH N+V + + T L +
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTV 242
Query: 233 IPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDP 292
+PF H +G+ L +VVM+ +F+ FL L ++ T +VP + L K
Sbjct: 243 VPFHHGFGMF-TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 293 IVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEH-SCITLTYGDPA 351
+++++DLS L + + + ++F V++ YGLTE S I +T
Sbjct: 302 LLNKYDLS--NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT----- 354
Query: 352 NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411
P K + G ++P + K I+ +T KSL N GE+CV+ +M+GY NN E T
Sbjct: 355 -PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
ID+ GWLHT K LIKYKG+QV PAELE++LL HPS+ DA V
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKI- 529
+PD AGE+P A VV+ +E ++MD+VAS V+ K++R + FVD +PK +GKI
Sbjct: 474 VPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKID 533
Query: 530 ---MRRILK 535
+R ILK
Sbjct: 534 GRAIREILK 542
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 158/565 (27%), Positives = 264/565 (46%), Gaps = 86/565 (15%)
Query: 28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSG------KAYTYAQVARDTRGFAKALR 81
P++ P+ ++L D + AE + +K A + A ++ + ++ T+ A +
Sbjct: 12 PSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGIS 70
Query: 82 SLGLRKGQVVIVVLPNVAEY--GIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI 139
G+RKG+ V V +PN +Y I AL +AA V NP + EL+ ++ ++A +
Sbjct: 71 RKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPV--PINPXYKSFELEHILNDSEATTL 128
Query: 140 VSYAPIYEKVK------GLGLPIIVLGEERIESAINWSELIEAADKAGNNFSN-----DD 188
V ++ +YE K G+ +V GE +N L E D +F N ++
Sbjct: 129 VVHSXLYENFKPVLEKTGVERVFVVGGE------VN--SLSEVXDSGSEDFENVKVNPEE 180
Query: 189 DV-----KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI--YGI 241
DV KGV LTH NL AN +V + T +G P FH +G+
Sbjct: 181 DVALIPYTGGTTGXPKGVXLTHFNLAANALQ--LAVATGLSHXDTIVGCXPXFHSAEFGL 238
Query: 242 TGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVK--DPIVDEFDL 299
+ T+ N+ V+ F + + ++ TF+ VPP + LV + +D
Sbjct: 239 VNLXV-TVGNE--YVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDW 295
Query: 300 SKLQLRAV----MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSA 355
S L++ A + ++ + P ++ + +G TE +C +T P
Sbjct: 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTE-ACPXVTTNPPLRLD- 353
Query: 356 GSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA------ 409
K + G ++E+K I+ E G+ L GE+ +R + +GY+ E+E
Sbjct: 354 --KSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYD 411
Query: 410 -------RT-----IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAI 457
RT ID+ G+LH KE+IKYKG+ +AP ELEA+
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLH--------------FQDRVKEVIKYKGYTIAPFELEAL 457
Query: 458 LLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP--NAKESEDDIMDFVASNVATYKKVRVL 515
L H +V D AV+ PDEEAGE+P A +V+ P K E+DI+++V ++ YK+VR +
Sbjct: 458 LXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREV 517
Query: 516 HFVDGIPKSHSGKIMRRILKDKMLE 540
FV+ +P++ SGK++RR+L++K E
Sbjct: 518 EFVEELPRTASGKLLRRLLREKEAE 542
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 222/501 (44%), Gaps = 41/501 (8%)
Query: 54 AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
A+VE + TYAQ+ A L +LG+ KG V +++PN E+ + G G
Sbjct: 34 AYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 93
Query: 114 VFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLGLPIIVLGE--------E 162
V N A E+ + + +K+++ AP+ + ++ P + + E
Sbjct: 94 VAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAE 153
Query: 163 RIESAINWSELIEAADKAGNNFSNDDDV----KQTDLWISKGVMLTHRNLVANLCSTLFS 218
R+ SA AAD+ DD++ KGV+ TH + V + S+ S
Sbjct: 154 RLRSA--------AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAASSWAS 204
Query: 219 VVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFA 278
+ L L P FH+ +T + + +R ++ M +F+ ++ V
Sbjct: 205 TIDVRYRDRLLLPL-PMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIG 262
Query: 279 PIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLT 338
VP I+ + + P E D R +T + K ++V + Y LT
Sbjct: 263 GAVPAILNFMRQVPEFAELDAP--DFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALT 318
Query: 339 EHSCI--TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC 396
E SC TL + A AGS + F ++ V+ + + + GE+ ++S
Sbjct: 319 E-SCGGGTLLLSEDALRKAGSAGRATMFT--DVAVRGDD----GVIREHGEGEVVIKSDI 371
Query: 397 VMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEA 456
+++ Y+N E T D NGW T K++I G V PAE+E+
Sbjct: 372 LLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIES 430
Query: 457 ILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLH 516
+++ P V + AV+ LPDE+ GEI AA VV + N + SE I+++ + +A YK + +
Sbjct: 431 VIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVI 489
Query: 517 FVDGIPKSHSGKIMRRILKDK 537
F + IP++ +GKI++ +L+++
Sbjct: 490 FAEAIPRNPTGKILKTVLREQ 510
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/529 (23%), Positives = 231/529 (43%), Gaps = 24/529 (4%)
Query: 28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAY--TYAQVARDTRGFAKALRSLGL 85
P+ + E + L DF+ + A L+ K +G+ + TYA+V + R LR+LG+
Sbjct: 10 PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGV 69
Query: 86 RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV---SY 142
G V + N + + G V ANP E+ ++ A+ K+++ +
Sbjct: 70 GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL 129
Query: 143 APIYEKVKGLGLPI---IVLGEERIESAINWSE-LIEAAD--KAGNNFSNDDDVKQTDLW 196
P+ E ++G + +V+ E+ E + + E L E AD + +
Sbjct: 130 LPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTG 189
Query: 197 ISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVV 256
+ KGV+ +HR LV + + + + L ++P FH+ ATL +V+
Sbjct: 190 LPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVL 249
Query: 257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXX 316
R + + ++ VTF VP + L+L ++ LR ++
Sbjct: 250 PGPRLDPASLVELFDGEGVTFTAGVPTVWLALAD--YLESTGHRLKTLRRLVVGGSAAPR 307
Query: 317 XXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK------KNSVGFILPNLE 370
+ FE+ GV+V++ YGLTE S + + ++ + S+ K G +P +
Sbjct: 308 SLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVR 365
Query: 371 VKFINPETGKSLPSNTP--GELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXX 428
++ + E G+ +P + GE+ ++ + GYY NEE T + +G+ T
Sbjct: 366 LRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424
Query: 429 XXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMN 488
K+LIK G ++ +LE L+ HP V++AAVV++P + E P A VV
Sbjct: 425 EGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR 484
Query: 489 PNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
E+ + + A ++ F + IP++ +GK ++R L+++
Sbjct: 485 GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQ 533
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/496 (24%), Positives = 210/496 (42%), Gaps = 35/496 (7%)
Query: 56 VEAVSGKAYTYAQ-VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV 114
+E +G +YA+ VAR R A L + GL+ G V E ++ L + AGGV
Sbjct: 21 IETAAGDKISYAELVARAGR-VANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79
Query: 115 FSGANPTAHASELKKQVDAADAKLIV-------SYAPIYEKVKGLGLPIIVLGEERIESA 167
+ N EL + A+ K++V A I KV G + LG + S
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV---GATVETLGPDGRGSL 136
Query: 168 INWSELIEAA----DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTL--FSVVP 221
+ + A D+ ++ + T SKG L+H NL +N + + + P
Sbjct: 137 TDAAAGASEAFATIDRGADDLAAILYTSGT-TGRSKGAXLSHDNLASNSLTLVDYWRFTP 195
Query: 222 EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIV 281
+ + + +P +H +G+ TL +G + + +F+ LD + T V
Sbjct: 196 DDV----LIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGV 249
Query: 282 PPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHS 341
P L++ P + + + R ++ + K G V E YG TE +
Sbjct: 250 PTFYTRLLQSPRLTK--ETTGHXRLFISGSAPLLADTHREWSAK-TGHAVLERYGXTETN 306
Query: 342 CITLTYGDPANPSAGSK-KNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG 400
T +NP G + +VG LP + + +PETGK LP G + V+ V +G
Sbjct: 307 XNT------SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKG 360
Query: 401 YYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLT 460
Y+ E+T +G+ T K+L+ GF V P E+E+ +
Sbjct: 361 YWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420
Query: 461 HPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDG 520
P V ++AV+ +P + GE A VV + A E ++ + +A +K + + FVD
Sbjct: 421 XPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDD 480
Query: 521 IPKSHSGKIMRRILKD 536
+P++ GK+ + +L++
Sbjct: 481 LPRNTXGKVQKNVLRE 496
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 132/528 (25%), Positives = 210/528 (39%), Gaps = 61/528 (11%)
Query: 34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIV 93
+ TL D ++A L+ D+ AF+ V G T+ A L G+ G V +
Sbjct: 4 HDFTLADVYRRNAALFPDRTAFM--VDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61
Query: 94 VLPNVAEY----GIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKV 149
+ N +E G VAL G + N +A E+ + ++V+ + V
Sbjct: 62 LSQNCSEMIELIGAVAL----IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIV 117
Query: 150 KGLGLPIIVLGEERIESAINWSELIEAADKAG-----NNFSNDDDVKQTDLWISKGVMLT 204
G+ LP LG + AI D +G + ++D + + G ++
Sbjct: 118 AGV-LP--SLGGVKKAYAIG--------DGSGPFAPFKDLASDTPFSAPEFGAADGFVII 166
Query: 205 HRNLVANLC-STLFSVVPEMIGQVT------------TLGLIPFFHIYGITGICCATLRN 251
H V L S +I Q + LG++P FH+ G+ G+ +
Sbjct: 167 HTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQA 225
Query: 252 KGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXX 311
G V+ +F+ + H+VT P++ + I+D+ + QL ++
Sbjct: 226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN-----ILDQ--AAPAQLASLRAVT 278
Query: 312 XXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITL--TYGDPANPSAGSKKNSVGFILPNL 369
FE P +G +E S ++ Y D + S G L
Sbjct: 279 GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRD--------RPKSAGRPLFWR 330
Query: 370 EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXX 429
V ++ E + LP GE+ +R V +GY+NN T +NGW HT
Sbjct: 331 TVAVVDAED-RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDAD 388
Query: 430 XXXXXXXXX--KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVM 487
KELIK G V PAE+E L HP++ DA V+ +PD + E A V
Sbjct: 389 GYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVC 448
Query: 488 NPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
P + D + +FVAS +A YKK + + FV+ +PK G I R +K
Sbjct: 449 KPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 124/528 (23%), Positives = 212/528 (40%), Gaps = 42/528 (7%)
Query: 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG--FAKALRSLGLRKGQVVIVV 94
T D + A Y D++A ++Y ++ DTR A + LG+++ V+V
Sbjct: 26 TFGDLLRDRAAKYGDRIAIT--CGNTHWSYREL--DTRADRLAAGFQKLGIQQKDRVVVQ 81
Query: 95 LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPIY 146
LPN+ E+ V + G + A P+ +SE+ + A+A + Y +
Sbjct: 82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA 141
Query: 147 EKVKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD---LWISK 199
+V+ LP IIV GE E + +L K S+D Q +SK
Sbjct: 142 RQVQS-KLPTLKNIIVAGE--AEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY-----GITGICCATLRNKGK 254
+ TH + + +L ++ V + L +P H Y G+ G+ A G+
Sbjct: 199 LIPRTHDDYIYSLKRSV--EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG----GR 252
Query: 255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXX 314
VV+ + +VT +VPP+ + + DLS LQ V+
Sbjct: 253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQ---VLQVGGAK 309
Query: 315 XXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
+ K G +Q+ +G+ E DP ++ + P E +
Sbjct: 310 FSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS---PYDESRVW 366
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
+ P T G L R ++GYY EE A + ++G+ T
Sbjct: 367 DDHDRDVKPGET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
K+ I G +VA E+E LL HP+V DAA+VS+PD+ GE ++ A ++
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKA 485
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
+ +A YK + FV+ P++ GK+ ++ L++ + EK+
Sbjct: 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 147/343 (42%), Gaps = 18/343 (5%)
Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM 258
KG ++ R L L + + + G+ + +P FH++G+ LR G V +
Sbjct: 171 KGAVIPRRALATTLDA--LADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228
Query: 259 NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXX 318
RF L + P + + + + + +L+K L
Sbjct: 229 GRFSTEGAARELNDGATMLFGV--PTMYHRIAETLPADPELAK-ALAGARLLVSGSAALP 285
Query: 319 XSSFEK--KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINP 376
E+ G +V E YG+TE T D P AG+ VG LP +E++ +
Sbjct: 286 VHDHERIAAATGRRVIERYGMTETLMNTSVRAD-GEPRAGT----VGVPLPGVELRLVE- 339
Query: 377 ETGK---SLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXX-XX 432
E G +L + GE+ VR + Y N + TA ++G+ T
Sbjct: 340 EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVR 399
Query: 433 XXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGE-IPAACVVMNPNA 491
+LIK G+++ E+E LL HP V +AAV PD + GE I A V +P A
Sbjct: 400 IVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA 459
Query: 492 KESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
+ + D VA+ +A +K+ RV+ ++D +P++ GKIM+R L
Sbjct: 460 PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 117/524 (22%), Positives = 230/524 (43%), Gaps = 74/524 (14%)
Query: 59 VSGKA----YTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
V+GK + + +++ +++ A L + GL++G V VVLP V E+ +V LG + AG
Sbjct: 65 VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPI-IVLGEERIESA 167
+F ++++ ++ + AK IV+ + ++V + L I +++ E+ +
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGW 184
Query: 168 INWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQ- 226
+N+ +L+ A + + + ++ + G S +P+M
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ-EASAIYFTSGT----------------SGLPKMAEHS 227
Query: 227 VTTLGLIPFFHIYGITGICCA----TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVP 282
++LGL G TG+ + T+ + G ++ + L + ++ TF ++P
Sbjct: 228 YSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNI----LCSLMEPWALGACTFVHLLP 282
Query: 283 ---PIIL----------SLVKDPIVDEF----DLSKLQLRAVMTXXXXXXXXXXSSFE-- 323
P+++ S++ PIV DLS + + + E
Sbjct: 283 KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENW 342
Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
+ G+ ++E+YG TE + + + K +G +V+ I+ + G LP
Sbjct: 343 RAQTGLDIRESYGQTETGLTCMV-----SKTMKIKPGYMGTAASCYDVQIID-DKGNVLP 396
Query: 384 SNTPGELCVRSQ-----CVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXX 438
T G++ +R + + GY +N ++TA I + WL
Sbjct: 397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRA 455
Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV-----MNPNAKE 493
++I G+++ P+E+E L+ HP+V + AV+S PD GE+ A VV ++ + ++
Sbjct: 456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515
Query: 494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
++ V S A YK R + FV +PK+ +GKI R L+DK
Sbjct: 516 LTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 117/524 (22%), Positives = 230/524 (43%), Gaps = 74/524 (14%)
Query: 59 VSGKA----YTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
V+GK + + +++ +++ A L + GL++G V VVLP V E+ +V LG + AG
Sbjct: 65 VNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG-----LPI-IVLGEERIESA 167
+F ++++ ++ + AK IV+ + ++V + L I +++ E+ +
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGW 184
Query: 168 INWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQ- 226
+N+ +L+ A + + + ++ + G S +P+M
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ-EASAIYFTSGT----------------SGLPKMAEHS 227
Query: 227 VTTLGLIPFFHIYGITGICCA----TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVP 282
++LGL G TG+ + T+ + G ++ + L + ++ TF ++P
Sbjct: 228 YSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNI----LCSLMEPWALGACTFVHLLP 282
Query: 283 ---PIIL----------SLVKDPIVDEF----DLSKLQLRAVMTXXXXXXXXXXSSFE-- 323
P+++ S++ PIV DLS + + + E
Sbjct: 283 KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENW 342
Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
+ G+ ++E+YG TE + + + K +G +V+ I+ + G LP
Sbjct: 343 RAQTGLDIRESYGQTETGLTCMV-----SKTMKIKPGYMGTAASCYDVQIID-DKGNVLP 396
Query: 384 SNTPGELCVRSQ-----CVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXX 438
T G++ +R + + GY +N ++TA I + WL
Sbjct: 397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRA 455
Query: 439 KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVV-----MNPNAKE 493
++I G+++ P+E+E L+ HP+V + AV+S PD GE+ A VV ++ + ++
Sbjct: 456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQ 515
Query: 494 SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
++ V S A YK R + FV +PK+ +GKI R L+DK
Sbjct: 516 LTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 118/549 (21%), Positives = 225/549 (40%), Gaps = 66/549 (12%)
Query: 32 VPENVTLPDFVLQDAELYA----DKVAFV---EAVSGKAYTYAQVARDTRGFAKALRSLG 84
VPEN +F ++YA +K+A + + + K +T+ + + A G
Sbjct: 51 VPENF---NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHG 107
Query: 85 LRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAP 144
+ KG V++ L + ++ LG+ G + A ++ +++ A K+IV A
Sbjct: 108 IGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAE 167
Query: 145 ---------IYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDL 195
+ + + L +G + +E I++ + +E + + + K D+
Sbjct: 168 DDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDI 227
Query: 196 ---WISKGV-----MLTHRNL--VANLCSTLFSVVPEMIGQVTTL-----GLIPFFHIYG 240
+ S G M+ H N + ++ + + E G T+ G + +YG
Sbjct: 228 CLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYG 287
Query: 241 ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLS 300
CA V +RFE + L+ + VT P I L+K+ DLS
Sbjct: 288 QWIAGCAVF-----VYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------DLS 336
Query: 301 KLQLRAVMTXXXXXXXXXXSSFEK--KFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK 358
+ F + +F G+++ E +G TE T+ P K
Sbjct: 337 HYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF-----PWMEPK 391
Query: 359 KNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG-------YYNNEEETART 411
S+G P +++ ++ + G+ GE+ + + M+G +Y + E
Sbjct: 392 PGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINT---MEGKPVGLFVHYGKDPERTEE 447
Query: 412 IDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
+G+ HT ++IK G++V P E+E+ L+ HP+V + A+
Sbjct: 448 TWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITG 507
Query: 472 LPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGK 528
+PD G++ A +V+ + S+ +++ D V + A YK R++ FV +PK+ SGK
Sbjct: 508 VPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGK 567
Query: 529 IMRRILKDK 537
I R ++DK
Sbjct: 568 IRRVEIRDK 576
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 143/346 (41%), Gaps = 18/346 (5%)
Query: 198 SKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
S G ML+H NL +N + + + P+ + + +P +H +G+ TL +G +
Sbjct: 170 SXGAMLSHDNLASNSLTLVDYWRFTPDDV----LIHALPIYHTHGLFVASNVTLFARGSM 225
Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXX 315
+ + F+ LD + V VP L++ P + ++L +
Sbjct: 226 IFLPXFDPDXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLAD 283
Query: 316 XXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK-KNSVGFILPNLEVKFI 374
S G V E YG+TE + T +NP G + +VG LP + +
Sbjct: 284 THREWS---AXTGHAVLERYGMTETNMNT------SNPYDGDRVPGAVGPALPGVSARVT 334
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
+PETG LP G + V V GY+ E T +G+ T
Sbjct: 335 DPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHI 394
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
+L+ GF V P E+E+ + P V ++AV+ +P + GE A VV + A
Sbjct: 395 LGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATID 454
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE 540
E ++ + +A + + FVD +P++ G + +L++ +
Sbjct: 455 EAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRETYXD 500
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 142/343 (41%), Gaps = 18/343 (5%)
Query: 198 SKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
S G ML+H NL +N + + + P+ + + +P +H +G+ TL +G +
Sbjct: 170 SXGAMLSHDNLASNSLTLVDYWRFTPDDV----LIHALPIYHTHGLFVASNVTLFARGSM 225
Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXX 315
+ + F+ LD + V VP L++ P + ++L +
Sbjct: 226 IFLPXFDPDXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLAD 283
Query: 316 XXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK-KNSVGFILPNLEVKFI 374
S G V E YG+TE + T +NP G + +VG LP + +
Sbjct: 284 THREWS---AXTGHAVLERYGMTETNMNT------SNPYDGDRVPGAVGPALPGVSARVT 334
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
+PETG LP G + V V GY+ E T +G+ T
Sbjct: 335 DPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHI 394
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
+L+ GF V P E+E+ + P V ++AV+ +P + GE A VV+ S
Sbjct: 395 LGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPS 454
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
E ++ + +A + + FVD +P++ G + +L++
Sbjct: 455 EAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRET 497
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 21/346 (6%)
Query: 198 SKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255
S G ML+H NL +N + + + P+ + + +P +H +G+ TL +G +
Sbjct: 170 SXGAMLSHDNLASNSLTLVDYWRFTPDDV----LIHALPIYHTHGLFVASNVTLFARGSM 225
Query: 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXX 315
+ + F+ LD + V VP L++ P + ++L +
Sbjct: 226 IFLPXFDPDXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLAD 283
Query: 316 XXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSK-KNSVGFILPNLEVKFI 374
S G V E YG+TE + T +NP G + +VG LP + +
Sbjct: 284 THREWS---AXTGHAVLERYGMTETNMNT------SNPYDGDRVPGAVGPALPGVSARVT 334
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
+PETG LP G + V V GY+ E T +G+ T
Sbjct: 335 DPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHI 394
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
+L+ GF V P E+E+ + P V ++AV+ +P + GE A VV+ S
Sbjct: 395 LGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPS 454
Query: 495 E---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
E +++ FV +A + + FVD +P++ G + +L++
Sbjct: 455 EILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRET 500
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 124/528 (23%), Positives = 206/528 (39%), Gaps = 42/528 (7%)
Query: 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG--FAKALRSLGLRKGQVVIVV 94
T D + A Y D++A ++Y ++ DTR A + LG+++ V+V
Sbjct: 26 TFGDLLRDRAAKYGDRIAIT--CGNTHWSYREL--DTRADRLAAGFQKLGIQQKDRVVVQ 81
Query: 95 LPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV--------SYAPIY 146
LPN+ E+ V + G + A P+ +SE+ + A+A + Y +
Sbjct: 82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA 141
Query: 147 EKVKGLGLP----IIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTD---LWISK 199
+V+ LP IIV GE E + +L K S+D Q +SK
Sbjct: 142 RQVQS-KLPTLKNIIVAGE--AEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIY-----GITGICCATLRNKGK 254
+ TH + + +L ++ V + L +P H Y G+ G+ A G+
Sbjct: 199 LIPRTHDDYIYSLKRSV--EVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAG----GR 252
Query: 255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXX 314
VV+ + +VT +VPP+ DLS LQ V+
Sbjct: 253 VVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQ---VLQVGGAK 309
Query: 315 XXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFI 374
+ K G +Q+ +G E DP ++ P E +
Sbjct: 310 FSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXS---PYDESRVW 366
Query: 375 NPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXX 434
+ P T G L R ++GYY EE A + ++G+ T
Sbjct: 367 DDHDRDVKPGET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 435 XXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494
K+ I G +VA E+E LL HP+V DAA VS PD+ GE ++ A ++
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKA 485
Query: 495 EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542
+ +A YK + FV+ P++ GK+ ++ L++ + EK+
Sbjct: 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 117/522 (22%), Positives = 215/522 (41%), Gaps = 45/522 (8%)
Query: 41 FVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE 100
++ + E A K A+++ TY ++ R FA ALR+LG+ + +++V+ +
Sbjct: 28 YLFRLNETRAGKTAYIDDTGST--TYGELEERARRFASALRTLGVHPEERILLVMLDTVA 85
Query: 101 YGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-------G 153
+ LG + AG V AN ++ + + A+ +++ + + V G
Sbjct: 86 LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDG 145
Query: 154 LPIIVLGEERIESAIN--WSELIEAADKAGNNFSND-DDVKQTDLWI--------SKGVM 202
+IV E + + ELI+AA A + DD+ W+ KG +
Sbjct: 146 CQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIA---FWLYSSGSTGKPKGTV 202
Query: 203 LTHRNL--VANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGI-TGICCATLRNKGKVVMMN 259
TH NL A L + + E F YG+ G+ ++M
Sbjct: 203 HTHANLYWTAELYAKPILGIAE---NDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259
Query: 260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXX 319
R A L+ H T VP + +++ P + + + +R +
Sbjct: 260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA--RADVAIRICTSAGEALPREIG 317
Query: 320 SSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG 379
F F G ++ + G TE I L+ N + + + G +P E++ + E G
Sbjct: 318 ERFTAHF-GCEILDGIGSTEMLHIFLS-----NRAGAVEYGTTGRPVPGYEIE-LRDEAG 370
Query: 380 KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXK 439
++P G+L ++ Y+NN E++ R W+ +
Sbjct: 371 HAVPDGEVGDLYIKGPSAAVMYWNNREKS-RATFLGEWIRSGDKYCRLPNGCYVYAGRSD 429
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPA-ACVVMNPNAKESE--- 495
+++K G V+P E+E +L+ H +V +AAVV + + G + A VV+ SE
Sbjct: 430 DMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV--DHGGLVKTRAFVVLKREFAPSEILA 487
Query: 496 DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537
+++ FV +A +K R + FVD +PK+ +GKI R L+++
Sbjct: 488 EELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 200/511 (39%), Gaps = 20/511 (3%)
Query: 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
T+ + + + A D A G T+A++ A L + GLR Q V VV P
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97 NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
N A+ I L + G V + NP ++EL + + + A +I + + + G
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
G II LG+ R ++ IE + + T + K ++ R +
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
+ V LGL+P +H+ G + A L G V++ F L +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
+VT P + +L L LR V + + PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
AYG TE + Y P G++ + GF EV+ + G + + + GE
Sbjct: 302 N-AYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
L V S GY N + TA + ++GW T ++I G
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
+ P+E+E +L T P V + V+ L D+ G+ ACVV S D + F +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
+K+ + +D +PK+ K++RR L ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
T+ + + + A D A G T+A++ A L + GLR Q V VV P
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97 NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
N A+ I L + G V + NP ++EL + + + A +I + + + G
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
G II LG+ R ++ IE + + T + K ++ R +
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
+ V LGL+P +H+ G + A L G V++ F L +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
+VT P + +L L LR V + + PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
YG TE + Y P G++ + GF EV+ + G + + + GE
Sbjct: 302 N-IYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
L V S GY N E TA + ++GW T ++I G
Sbjct: 353 LIVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
+ P+E+E +L T P V + V+ L D+ G+ ACVV S D + F +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
+K+ + +D +PK+ K++RR L ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 123/545 (22%), Positives = 227/545 (41%), Gaps = 49/545 (8%)
Query: 23 FRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRS 82
F R+ +++ L D + + A +D +A ++ + +Y ++ + A +LR
Sbjct: 14 FARRYREKGYWQDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRR 69
Query: 83 LGLRKGQVVIVVLPNVAE-----YGIVALGIMAAGGVFSGANP--TAHASELKKQVDAAD 135
G++ G+ +V L NVAE + ++ LG+ +FS A+AS+++ + AD
Sbjct: 70 QGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIAD 129
Query: 136 AK--------LIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSND 187
+ + ++ + ++ + L + GE ++ AIN A+ S
Sbjct: 130 RQHALFSGDDFLNTFVTEHSSIRVVQL-LNDSGEHNLQDAIN-----HPAEDFTATPSPA 183
Query: 188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-----VPEMIGQVTTLGLIPFFHIYGIT 242
D+V L S G T + + +SV + + Q L IP H Y ++
Sbjct: 184 DEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMS 241
Query: 243 GICCATLRNKGKVVMMNRFELRAFLDALI-THEVTFAPIVPPIILSLVKDPIVDEFDLSK 301
+ G V++ LI H+V +VPP + ++ I E S+
Sbjct: 242 SPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE---SR 298
Query: 302 LQLRAVMTXXXXXXXXXXSSFEKKFP---GVQVQEAYGLTEHSCITLTYGDPANPSAGSK 358
QL A + ++ + P G Q+Q+ +G+ E + T D SA
Sbjct: 299 AQL-ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDD---SAEKI 353
Query: 359 KNSVGF-ILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW 417
++ G+ + P+ EV + E G LP G L R +GYY + + A D NG+
Sbjct: 354 IHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGF 412
Query: 418 LHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEA 477
+ K+ I G ++A E+E +LL HP+V AA+VS+ DE
Sbjct: 413 YCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELM 472
Query: 478 GEIPAACVVMNPNAKESEDDIMDFV-ASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536
GE A +V+ + + + F+ +A +K + VD +P + GK+ ++ L+
Sbjct: 473 GEKSCAYLVVKEPLRAVQ--VRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQ 530
Query: 537 KMLEK 541
+ +
Sbjct: 531 WLASR 535
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 120/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
T+ + + + A D A G T+A++ A L + GLR Q V VV P
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97 NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
N A+ I L + G V + NP ++EL + + + A +I + + + G
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
G II LG+ R ++ IE + + T + K ++ R +
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
+ V LGL+P +H+ G + A L G V++ F L +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
+VT P + +L L LR V + + PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
YG TE + Y P G++ + GF EV+ + G + + + GE
Sbjct: 302 N-GYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
L V S GY N + TA + ++GW T ++I G
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
+ P+E+E +L T P V + V+ L D+ G+ ACVV S D + F +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
+K+ + +D +PK+ K++RR L ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
T+ + + + A D A G T+A++ A L + GLR Q V VV P
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97 NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
N A+ I L + G V + NP ++EL + + + A +I + + + G
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
G II LG+ R ++ IE + + T + K ++ R +
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
+ V LGL+P +H+ G + A L G V++ F L +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
+VT P + +L L LR V + + PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
YG TE + Y P G++ + GF EV+ + G + + + GE
Sbjct: 302 N-IYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
L V S GY N + TA + ++GW T ++I G
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
+ P+E+E +L T P V + V+ L D+ G+ ACVV S D + F +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
+K+ + +D +PK+ K++RR L ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/511 (23%), Positives = 199/511 (38%), Gaps = 20/511 (3%)
Query: 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLP 96
T+ + + + A D A G T+A++ A L + GLR Q V VV P
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 97 NVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGL 152
N A+ I L + G V + NP ++EL + + + A +I + + + G
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 153 GLPIIVLGE-ERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVAN 211
G II LG+ R ++ IE + + T + K ++ R +
Sbjct: 123 GARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESR 181
Query: 212 LCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALI 271
+ V LGL+P +H+ G + A L G V++ F L +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQ 241
Query: 272 THEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQV 331
+VT P + +L L LR V + + PG +V
Sbjct: 242 QEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 332 QEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGE 389
YG TE + Y P G++ + GF EV+ + G + + + GE
Sbjct: 302 N-IYGTTE--AMNSLYMR--QPKTGTEM-APGFFS---EVRIVRIGGGVDEIVANGEEGE 352
Query: 390 LCVR-SQCVMQGYYNNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQ 448
L V S GY N + TA + ++GW T ++I G
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411
Query: 449 VAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVA 507
+ P+E+E +L T P V + V+ L D+ G+ ACVV S D + F +S +A
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471
Query: 508 TYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538
+K+ + +D +PK+ K++RR L ++
Sbjct: 472 DFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 118/497 (23%), Positives = 190/497 (38%), Gaps = 20/497 (4%)
Query: 51 DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
D A G T+A++ A L + GLR Q V VV PN A+ I L +
Sbjct: 17 DHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHR 76
Query: 111 AGGVFSGANPTAHASELKKQVDAAD--AKLIVSYAPIYEKV--KGLGLPIIVLGE-ERIE 165
G V + NP ++EL + + + A +I + + + G G II LG+ R
Sbjct: 77 LGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDG 136
Query: 166 SAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIG 225
++ IE + + T + K ++ R + + V
Sbjct: 137 EPYSYGPPIEDPQREPAQPAFIFYTSGTT-GLPKAAIIPQRAAESRVLFXSTQVGLRHGR 195
Query: 226 QVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPII 285
LGL P +H+ G + A L G V++ F L + +VT P +
Sbjct: 196 HNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL 255
Query: 286 LSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITL 345
+L L LR V + + PG +V YG TE
Sbjct: 256 DALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVN-IYGTTEAXNSLY 314
Query: 346 TYGDPANPSAGSKKNSVGFILPNLEVKFINPETG--KSLPSNTPGELCVR-SQCVMQGYY 402
P G++ + GF EV+ + G + + + GEL V S GY
Sbjct: 315 XR----QPKTGTEX-APGFFS---EVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYL 366
Query: 403 NNEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHP 462
N + TA + ++GW T + I G + P+E+E +L T P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAP 425
Query: 463 SVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV-ASNVATYKKVRVLHFVDGI 521
V + V+ L D+ G+ ACVV S D + F +S +A +K+ + +D +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 522 PKSHSGKIMRRILKDKM 538
PK+ K++RR L ++
Sbjct: 486 PKNALNKVLRRQLVQQV 502
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/495 (22%), Positives = 200/495 (40%), Gaps = 34/495 (6%)
Query: 62 KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT 121
+ +Y ++ R + A L GL KG +V LPNVAE+ IV ++ AG V A +
Sbjct: 54 RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 122 AHASELKKQVDAADAKLIV--------SYAPIYEKVKGLGL-PIIVLGEERIESAINWSE 172
EL + KL++ S + + + L P I+L + +
Sbjct: 114 HRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLD 173
Query: 173 LIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV--VPEMIG---QV 227
IE + +FS+ + +S G T + + +SV E+ G
Sbjct: 174 WIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNT 233
Query: 228 TTLGLIPFFHIYGITGI-CCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIIL 286
L +P H + ++ L G VVM E + H+V A +VP ++
Sbjct: 234 RLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293
Query: 287 SLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGV---QVQEAYGLTEHSCI 343
++ + + L+L V S ++ P V ++Q+ +G+ E +
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQV------GGASFPESLARQVPEVLNCKLQQVFGMAE-GLV 346
Query: 344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYN 403
T D ++ + + I + E+K ++ E + +P G L R GYY
Sbjct: 347 NYTRLDDSDEQIFTTQGRP--ISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQ 403
Query: 404 NEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPS 463
+ E ++ D++ + ++ K+ I G ++A E+E ++L HP
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPE 463
Query: 464 VEDAAVVSLPDEEAGEIPAACVV-MNPNAKES--EDDIMDFVASNVATYKKVRVLHFVDG 520
V AA+V++ DE+ GE A +V NP K +M+ +A YK + ++
Sbjct: 464 VMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMEL---GIAQYKLPDQIKLIES 520
Query: 521 IPKSHSGKIMRRILK 535
+P + GK+ ++ L+
Sbjct: 521 LPLTAVGKVDKKQLR 535
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 132/305 (43%), Gaps = 21/305 (6%)
Query: 230 LGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLV 289
L ++P +HI G++ + A + V ++++F L + +T +VP + L+
Sbjct: 208 LSVLPIYHISGLSVLLRAVIEGF-TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLM 266
Query: 290 KDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
+ + + ++L K+ L ++ + P + ++G+TE +C
Sbjct: 267 QQGLHEPYNLQKILLGGA----KLSATMIETALQYNLP---IYNSFGMTE-TCSQFLTAT 318
Query: 350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
P A + ++VG N++VK NP GEL ++ VM GY + T
Sbjct: 319 PEMLHA--RPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTG 370
Query: 410 RTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469
+NG+ +T K+LI G + P ++E + P + DA
Sbjct: 371 TF--ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVC 428
Query: 470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKI 529
V PD+ G++P V + +++ ++ +++ ++A YK + VD +P + +GK+
Sbjct: 429 VGHPDDTWGQVPKLYFVSESDISKAQ--LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKL 486
Query: 530 MRRIL 534
R L
Sbjct: 487 QRNKL 491
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
+++ G ++ AE+E+ L+ HP + +AAVV +P G+ A V +N + S +
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
++ ++VA + VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 50 ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
D+ A + + K +Y ++ RD FA L LG++KG VV + +P V E +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 106 LGIMAAGGV----FSGANPTAHASEL 127
L G V F G +P A A +
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRI 175
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
+++ G ++ AE+E+ L+ HP + +AAVV +P G+ A V +N + S +
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
++ ++V + VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 50 ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
D+ A + + K +Y ++ RD FA L LG++KG VV + +P V E +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 106 LGIMAAGGV----FSGANPTAHASEL 127
L G V F G +P A A +
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRI 175
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
+++ G ++ AE+E+ L+ HP + +AAVV +P G+ A V +N + S +
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
++ ++V + VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 50 ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
D+ A + + K +Y ++ RD FA L LG++KG VV + +P V E +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 106 LGIMAAGGV----FSGANPTAHASEL 127
L G V F G +P A A +
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRI 175
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
+++ G ++ AE+E+ L+ HP + +AAVV +P G+ A V +N + S +
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
++ ++V + VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 50 ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
D+ A + + K +Y ++ RD FA L LG++KG VV + +P V E +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 106 LGIMAAGGV----FSGANPTAHASEL 127
L G V F G +P A A +
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRI 175
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
+++ G ++ AE+E+ L+ HP + +AAVV +P G+ A V +N + S +
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
++ ++V + VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 50 ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
D+ A + + K +Y ++ RD FA L LG++KG VV + +P V E +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 106 LGIMAAGGV----FSGANPTAHASEL 127
L G V F G +P A A +
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRI 175
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
+++ G ++ AE+E+ L+ HP + +AAVV +P G+ A V +N + S +
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
++ ++V + VLH+ D +PK+ SGKIMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 50 ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
D+ A + + K +Y ++ RD FA L LG++KG VV + +P V E +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 106 LGIMAAGGV----FSGANPTA 122
L G V F G +P A
Sbjct: 150 LACARIGAVHSVIFGGFSPEA 170
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 143/367 (38%), Gaps = 55/367 (14%)
Query: 200 GVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN 259
G +LT R +F + IG +T + +YG CATL +G N
Sbjct: 290 GALLTMRYTFDTHQEDVFFTAGD-IGWITGHTYV----VYGPLLYGCATLVFEGTPAYPN 344
Query: 260 RFELRAFLDALITHEVTFAPIVPPIILSLVK---DPIVDEFDLSKLQLRAVMTXXXXXXX 316
+ D + H+VT V P L L+K D ++ L L+ +
Sbjct: 345 ---YSRYWDIIDEHKVT-QFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV 400
Query: 317 XXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGS----KKNSVGFILPNLEVK 372
S + + + + Y TE +T P AG K S F ++
Sbjct: 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVT------PLAGGVTPMKPGSASFPFFGIDAV 454
Query: 373 FINPETGKSL-PSNTPGELCVRSQCVMQGYYNNEEETARTIDKN-------------GWL 418
++P TG+ L S+ G L V++ ARTI KN G+
Sbjct: 455 VLDPNTGEELNTSHAEGVLAVKAAW---------PSFARTIWKNHDRYLDTYLNPYPGYY 505
Query: 419 HTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG 478
T +++ G +++ AE+EA ++ P V + AVV D+ G
Sbjct: 506 FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTG 565
Query: 479 EIPAACVVMNPNAKES---EDDIMDF-------VASNVATYKKVRVLHFVDGIPKSHSGK 528
+ AA VV+ + S +D++ D V ++ + +++ VD +PK+ SGK
Sbjct: 566 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGK 625
Query: 529 IMRRILK 535
IMRRIL+
Sbjct: 626 IMRRILR 632
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 57 EAVSGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF 115
E G + TY ++ + A+ L S+G+RKG V V +P V E I L I G +
Sbjct: 107 EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIH 166
Query: 116 SGANPTAHASELKKQVDAADAKLIVS 141
S ++ L+ +++ D+K++++
Sbjct: 167 SVVFAGFSSNSLRDRINDGDSKVVIT 192
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 440 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESED--- 496
+++ G ++ AE+E+ L+ HP + +AAVV +P G+ A V +N + S +
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577
Query: 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILK 535
++ ++V + VLH+ D +PK+ SG IMRRIL+
Sbjct: 578 EVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 50 ADKVAFV----EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVA 105
D+ A + + K +Y ++ RD FA L LG++KG VV + +P V E +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 106 LGIMAAGGV----FSGANPTAHASEL 127
L G V F G +P A A +
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRI 175
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 156/384 (40%), Gaps = 40/384 (10%)
Query: 54 AFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113
A+VE + TYAQ+ A L +LG+ KG V +++PN E+ + G G
Sbjct: 20 AYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 79
Query: 114 VFSGANPTAHASELKKQVDAADAKLIV---SYAPIYEKVKGLGLPIIVLGE--------E 162
V N A E+ + + +K+++ AP+ + ++ P + + E
Sbjct: 80 VAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAE 139
Query: 163 RIESAINWSELIEAADKAGNNFSNDDDV----KQTDLWISKGVMLTHRNLVANLCSTLFS 218
R+ SA AAD+ DD++ KGV+ TH + V + S+ S
Sbjct: 140 RLRSA--------AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAASSWAS 190
Query: 219 VVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFA 278
+ L L P FH+ +T + + +R ++ M +F+ ++ V
Sbjct: 191 TIDVRYRDRLLLPL-PMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIG 248
Query: 279 PIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLT 338
VP I+ + + P E D R +T + K ++V + Y LT
Sbjct: 249 GAVPAILNFMRQVPEFAELDAP--DFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALT 304
Query: 339 EHSC--ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC 396
E SC TL + A AGS + F ++ V+ + + + GE+ ++S
Sbjct: 305 E-SCGGGTLLLSEDALRKAGSAGRATMFT--DVAVRGDD----GVIREHGEGEVVIKSDI 357
Query: 397 VMQGYYNNEEETARTIDKNGWLHT 420
+++ Y+N E T D NGW T
Sbjct: 358 LLKEYWNRPEATRDAFD-NGWFRT 380
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 100/491 (20%), Positives = 188/491 (38%), Gaps = 38/491 (7%)
Query: 60 SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN 119
SG+ +Y ++ + A+ L+ G KG VV + E I LG++ AG + +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 120 PTAHASELKKQVDAADAKLIVSYAPIYEKVKGL---GLPIIVLGEERIE-SAINWSELIE 175
P + + + A ++++ + E+ L G + + + R E A + + I+
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAID 605
Query: 176 AADKAGNNFSNDDDVKQTDLWISKGVMLTHRN---LVANLCSTLFSVVPEMIGQVTTLGL 232
D A +++ K KG + TH N LV ++ FS + V+
Sbjct: 606 PNDPAYIMYTSGTTGK------PKGNITTHANIQGLVKHVDYMAFSDQDTFLS-VSNYAF 658
Query: 233 IPF-FHIYGITGICCATLRNKGKVVMMNRFEL--RAFLDALITHEVTFAPIVPPIILSLV 289
F F Y A++ N ++++ + L L LI E + +L+
Sbjct: 659 DAFTFDFY-------ASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLL 711
Query: 290 KDPIVDEFDLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGD 349
D D LR ++ + ++ YG TE + +
Sbjct: 712 TDAGEDWMK----GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVV 767
Query: 350 PANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409
P + S +G + N V +N E + P GELC+ V +GY N + T
Sbjct: 768 HDLPDSISSL-PIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTK 825
Query: 410 RTIDKNGW------LHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPS 463
+N + T + +K +G ++ E+E L +P
Sbjct: 826 EKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPG 885
Query: 464 VEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPK 523
V+DA VV+ E+G+ ++N + S +D+ + + Y + F+D +P
Sbjct: 886 VKDAVVVA-DRHESGDASINAYLVN-RTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPL 943
Query: 524 SHSGKIMRRIL 534
+ +GK+ +R+L
Sbjct: 944 TTNGKVNKRLL 954
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 115/537 (21%), Positives = 196/537 (36%), Gaps = 41/537 (7%)
Query: 16 AHDEEHI--FRSRHPAVP-VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
AH E H R PAV P + + A D VA + TY +
Sbjct: 52 AHIEHHWTDLRPTGPAVERAPAGACVHELFEAQAARAPDAVALLH--EADELTYGALNER 109
Query: 73 TRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVD 132
A L LG+ G +V V L + + L ++ AGG ++ +P L ++
Sbjct: 110 ANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLE 169
Query: 133 AADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQ 192
A L+V+ P+ ++ G + A N + + D A F++ +
Sbjct: 170 DTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGR- 228
Query: 193 TDLWISKGVMLTHRNLVANLCSTLFSVV--PEMIGQVTTLGLIPF-FHIYG--ITGICCA 247
KGVM HR L ++ E+ Q + + F ++G + G C
Sbjct: 229 -----PKGVMSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARC- 282
Query: 248 TLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAV 307
L++ + EL A H VT + + LV D + + F+ +R
Sbjct: 283 VLQSGQNPDPLEIGELVA------RHGVTMLQLSASLFNFLV-DEVPEAFE----GVRYA 331
Query: 308 MTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILP 367
+T + + P +++ YG E T + A +G+ +G L
Sbjct: 332 ITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTAL-PIGVPLA 390
Query: 368 NLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW--------LH 419
++ + K + GEL V + GY + TA + +
Sbjct: 391 GKRAYVLDDDL-KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR 449
Query: 420 TXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAG- 478
T + +K +GF+V P E+EA L+ HP+V AAV++ D G
Sbjct: 450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ-DSRLGD 508
Query: 479 -EIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRIL 534
++ A V +A ++ VA + Y VD +P++ +GK+ RR L
Sbjct: 509 KQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 11/224 (4%)
Query: 324 KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLP 383
++FP ++ YG TE + + + + S+ VGF P++ + FI E G+ LP
Sbjct: 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNI-FIMDEEGQPLP 340
Query: 384 SNTPGELCVRSQCVMQGYYNNEEETARTI--DKNGWLHTXXXXXXXXXXXXXXXXXXKEL 441
GE+ + V +GY E T + + W +
Sbjct: 341 EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQ 400
Query: 442 IKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDD---- 497
IK G+++ E+E + V A V+ P + G + + P E E +
Sbjct: 401 IKLHGYRMELEEIEFHVRQSQYVRSAVVI--PYQPNGTVEYLIAAIVPEEHEFEKEFQLT 458
Query: 498 --IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539
I +A+++ Y R + D I + +GKI R+ + +++L
Sbjct: 459 SAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVL 502
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 90/422 (21%), Positives = 154/422 (36%), Gaps = 65/422 (15%)
Query: 39 PDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV 98
P F D E D VA T++Q+ R T A+ L G G V++ P
Sbjct: 41 PAFTFMDYEQDWDGVAIT-------LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQG 92
Query: 99 AEYGIVALGIMAAGGVFSGAN-PTAHASELKKQV---DAADAKLIVSYAPIYEKVKGLGL 154
EY + LG + AG + + P ++ + D++ ++ + + + + V+ +
Sbjct: 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152
Query: 155 PIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKG-------VMLTHRN 207
GE +I +L++ G F D+ L + G V+++H+N
Sbjct: 153 ---RPGES--PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQN 207
Query: 208 LVANLCSTLFSVVPEMIG----QVTTLGLIPFFHIYG-ITGICCATLRN-----KGKVVM 257
+ N + + G + +PF+H G + GIC L V
Sbjct: 208 VRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSF 267
Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXX 317
+ R L A H + AP L D+ D++ L ++T
Sbjct: 268 LQRPARWMHLMASDFHAFSAAPN---FAFELAARRTTDD-DMAGRDLGNILTILSGSERV 323
Query: 318 XXSS---FEKKFPGVQVQE-----AYGLTEHSCITLTY--GDP---------------AN 352
++ F +F +QE +Y L E + T G P A
Sbjct: 324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAK 383
Query: 353 PSAGSKKNS-VGFILPNLE-VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR 410
P AG S + ++LP V+ ++ +T P T GE+ V V GY+ +E+ R
Sbjct: 384 PCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESER 443
Query: 411 TI 412
T
Sbjct: 444 TF 445
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 94/422 (22%), Positives = 155/422 (36%), Gaps = 65/422 (15%)
Query: 39 PDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV 98
P F D E D VA T++Q+ R T A+ L G G V++ P
Sbjct: 41 PAFTFXDYEQDWDGVAIT-------LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQG 92
Query: 99 AEYGIVALGIMAAGGVFSGAN-PTAHASELKKQV---DAADAKLIVSYAPIYEKVKGLGL 154
EY + LG + AG + + P ++ + D++ ++ + + + + V+ +
Sbjct: 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152
Query: 155 PIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKG-------VMLTHRN 207
GE +I +L++ G F D+ L + G V+ +H+N
Sbjct: 153 ---RPGES--PPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQN 207
Query: 208 LVAN---LCSTLFSVVPEMIGQVTTL-GLIPFFHIYG-ITGICCATLRN-----KGKVVM 257
+ N L S F+ + + L +PF+H G + GIC L V
Sbjct: 208 VRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSF 267
Query: 258 MNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTXXXXXXXX 317
+ R L A H + AP L D+ D + L ++T
Sbjct: 268 LQRPARWXHLXASDFHAFSAAPN---FAFELAARRTTDD-DXAGRDLGNILTILSGSERV 323
Query: 318 XXSS---FEKKFPGVQVQE-----AYGLTEHSCITLTY--GDP---------------AN 352
++ F +F +QE +YGL E + T G P A
Sbjct: 324 QAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAK 383
Query: 353 PSAGSKKNS-VGFILPNLE-VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETAR 410
P AG S + + LP V+ ++ +T P T GE+ V V GY+ +E+ R
Sbjct: 384 PCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESER 443
Query: 411 TI 412
T
Sbjct: 444 TF 445
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 110/493 (22%), Positives = 185/493 (37%), Gaps = 42/493 (8%)
Query: 61 GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP 120
G+ TY Q+ RD+ A + SL L V+V + + + +G + +
Sbjct: 27 GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86
Query: 121 TAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKA 180
+ + ++ A LI++ ++G+ L + L E IESA +L E +
Sbjct: 87 HSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL--VSLSE--IESA----KLAEMPYER 138
Query: 181 GNNFSNDDD----VKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFF 236
++ DD+ KGV ++H NL++ + ++ Q L P+
Sbjct: 139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYS 198
Query: 237 HIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSL--VKDPIV 294
+ TL G + + + EL A L T T A + I S D +
Sbjct: 199 FDLSVM-YWAPTLALGGTLFALPK-ELVADFKQLFT---TIAQLPVGIWTSTPSFADMAM 253
Query: 295 DEFDLSKLQLRAVMTXXXXXXXXXXSSFEK---KFPGVQVQEAYGLTEH----SCITLTY 347
D + ++ A+ S+ K +FP ++ AYG TE S I +T
Sbjct: 254 LSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITR 313
Query: 348 GDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEE 407
N + + +G+ P+ I+ E GK L S GE+ V V +GY NN E+
Sbjct: 314 EMVDNYT----RLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEK 368
Query: 408 TAR---TIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSV 464
TA T HT IKY G+++ ++ L P V
Sbjct: 369 TAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428
Query: 465 EDA-AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF-------VASNVATYKKVRVLH 516
A AV E + A +V+ KE D ++ V ++ +Y
Sbjct: 429 ASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFL 488
Query: 517 FVDGIPKSHSGKI 529
+ D +P + +GKI
Sbjct: 489 YRDSLPLTPNGKI 501
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 95/543 (17%), Positives = 201/543 (37%), Gaps = 59/543 (10%)
Query: 15 AAHDEE-HIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDT 73
H+EE ++F + P + T+ + + VA V + TY ++
Sbjct: 17 GTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIV--CENEQLTYHELNVKA 74
Query: 74 RGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDA 133
A+ G+ K +V +++ + I L ++ AGG + + ++ +D
Sbjct: 75 NQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDD 134
Query: 134 ADAKLIVSYAPIYEKVKGLGL--PIIVLGEERIE-----------SAINWSELIEAADKA 180
+ A+++++ + + + + + E+ I+ + + + +I +
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTT 194
Query: 181 GNNFSNDDDVKQTDLWISKGVMLTHR---NLVANLCSTLFSVVPEMIGQVTTLGLIPFFH 237
GN KG ML H+ NL ++L + IGQ ++
Sbjct: 195 GN---------------PKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW 239
Query: 238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEF 297
+ + A+L K + + + +++ E+T + P ++ L + I
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQ---KEITVITLPPTYVVHLDPERI---- 292
Query: 298 DLSKLQLRAVMTXXXXXXXXXXSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGS 357
L ++ ++T + +++K + AYG TE + T+ A
Sbjct: 293 ----LSIQTLITAGSATSPSLVNKWKEKVTYIN---AYGPTETTICATTW--VATKETIG 343
Query: 358 KKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGW 417
+G + N ++ +I E + GELC+ + + +GY+ E T++ N +
Sbjct: 344 HSVPIGAPIQNTQI-YIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPF 402
Query: 418 L------HTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPSVEDAAVVS 471
+ T +K +G +V E+E+ILL H + + AV
Sbjct: 403 VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV 462
Query: 472 LPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMR 531
D + E P C + + F + + TY +D +P + +GKI R
Sbjct: 463 HKDHQ--EQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDR 520
Query: 532 RIL 534
+ L
Sbjct: 521 KQL 523
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/374 (20%), Positives = 139/374 (37%), Gaps = 52/374 (13%)
Query: 199 KGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV--V 256
+GV++THR + ANL + + G + +PF+H G+ G + + V +
Sbjct: 191 RGVIITHREVXANLRAISHDGIKLRPGD-RCVSWLPFYHDXGLVGFLLTPVATQLSVDYL 249
Query: 257 MMNRFELRAF-LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQL---RAVMTXXX 312
F R LI+ + PP L + V+E DL++L L R
Sbjct: 250 RTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRR-VNEKDLAELDLSCWRVAGIGAE 308
Query: 313 XXXXXXXSSFEKKFPGVQVQE-----AYGLTEHSCITLTYGDPAN--------------- 352
F + F V YGL E++ + +++ D A+
Sbjct: 309 PISAEQLHQFAECFRQVNFDNKTFXPCYGLAENA-LAVSFSDEASGVVVNEVDRDILEYQ 367
Query: 353 -----PSAGSKKNSV----GFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYN 403
P A ++ S G LP ++ N E G + G +C+ + GY+
Sbjct: 368 GKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGXPVAERVVGHICISGPSLXSGYFG 426
Query: 404 NEEETARTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILLTHPS 463
+ + + I GWL T K+LI +G + P ++E I P
Sbjct: 427 D-QVSQDEIAATGWLDT-GDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPE 484
Query: 464 VEDA-AVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVD--- 519
+ A+ + +E + C + + +E ++ +A+ + + + V +D
Sbjct: 485 IHSGDAIAFVTAQEKIILQIQCRISD---EERRGQLIHALAARIQS--EFGVTAAIDLLP 539
Query: 520 --GIPKSHSGKIMR 531
IP++ SGK R
Sbjct: 540 PHSIPRTSSGKPAR 553
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 74/200 (37%), Gaps = 35/200 (17%)
Query: 367 PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA----------------- 409
P EVK I+P+T + GE+ V+S V +GY+N EET
Sbjct: 379 PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYL 438
Query: 410 RTIDKNGWLHTXXXXXXXXXXXXXXXXXXKELIKYKGFQVAPAELEAILL---THPSVED 466
RT D G+LH K+LI G P ++E L H +
Sbjct: 439 RTGDL-GFLH---------ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPLHHVLGK 488
Query: 467 AAVVSLPDEEAGEIPAACVVMNPNAKESEDD-----IMDFVASNVATYKKVRVLHFVDGI 521
A + +E ++ C V N + D I + V N VL +
Sbjct: 489 CAAFVIQEEHEYKLTVXCEVKNRFXDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAX 548
Query: 522 PKSHSGKIMRRILKDKMLEK 541
P + SGKI R + +L+K
Sbjct: 549 PHTTSGKIRRNFCRKHLLDK 568
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 5/139 (3%)
Query: 16 AHDEEHI--FRSRHPAVP-VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARD 72
AH E H R PAV P + + A D VA + TY +
Sbjct: 52 AHIEHHWTDLRPTGPAVERAPAGACVHELFEAQAARAPDAVALLHEA--DELTYGALNER 109
Query: 73 TRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVD 132
A L LG+ G +V V L + + L ++ AGG ++ +P L ++
Sbjct: 110 ANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLE 169
Query: 133 AADAKLIVSYAPIYEKVKG 151
A L+V+ P+ ++ G
Sbjct: 170 DTGAPLLVTSRPLSGRLTG 188
>pdb|2I2X|A Chain A, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|C Chain C, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|E Chain E, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|G Chain G, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|I Chain I, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|K Chain K, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|M Chain M, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|O Chain O, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 461
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 131 VDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDV 190
V++ K + YA + + GL I LG I+ + W+++ + A K G + D D
Sbjct: 163 VESMGGKEVFDYAVLRNDIPGLLYSIGCLGS--IDMELIWTDISKIAKKTGTISAGDTDC 220
Query: 191 KQTDLWISKGVMLTHRNL 208
Q + + G L ++NL
Sbjct: 221 AQANTAMFIGGGLLNKNL 238
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 15/182 (8%)
Query: 13 LAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAY----TYAQ 68
L A ++E + + H + EN T P + +K F E GK Y Y
Sbjct: 15 LWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNK--FAEGYPGKRYYGGCEYVD 72
Query: 69 VA------RDTRGFAKALRSLGLRKG-QVVIVVLPNVAEYGIVALGI-MAAGGVFSGANP 120
+ R F ++ G Q V + E G LG+ +A GG + +P
Sbjct: 73 IVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSP 132
Query: 121 TAHASELKKQVDAA-DAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADK 179
+ +L V DA + YA + ++ K +I+ G ++W+++ E AD
Sbjct: 133 VNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADS 192
Query: 180 AG 181
G
Sbjct: 193 IG 194
>pdb|1B7E|A Chain A, Transposase Inhibitor
Length = 420
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 16 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
AH+E + RS+HP V + L D + EL ++ ++ K + R R
Sbjct: 147 AHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQI----SIPQKGVVDKRGKRKNRP 202
Query: 76 FAKALRSLGLRKGQVVI 92
KA SL LR G++ +
Sbjct: 203 ARKA--SLSLRSGRITL 217
>pdb|2PRR|A Chain A, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|B Chain B, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|C Chain C, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|D Chain D, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|E Chain E, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|F Chain F, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|G Chain G, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|H Chain H, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|I Chain I, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|J Chain J, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|K Chain K, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
pdb|2PRR|L Chain L, Crystal Structure Of Alkylhydroperoxidase Ahpd Core:
Uncharacterized Peroxidase-Related Protein (Yp_296737.1)
From Ralstonia Eutropha Jmp134 At 2.15 A Resolution
Length = 197
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 24 RSRHP--AVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGF----- 76
R HP PVPE LPD + Q DK FV V T A + R F
Sbjct: 4 RPAHPISRYPVPELAALPDDIRQRILEVQDKAGFVPNVF---LTLAHRPDEFRAFFAYHD 60
Query: 77 AKALRSLGLRKGQ----VVIVVLPNVAEYGIVALGIM 109
A L+ GL KG+ VV N Y +VA G +
Sbjct: 61 ALXLKDGGLTKGEREXIVVATSAANQCLYCVVAHGAI 97
>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|B Chain B, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|C Chain C, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|D Chain D, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|E Chain E, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|F Chain F, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|G Chain G, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|H Chain H, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|I Chain I, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|J Chain J, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
Length = 249
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 53 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 89
>pdb|4DM0|A Chain A, Tn5 Transposase: 20mer Outside End 2 Mn Complex
Length = 477
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 16 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
AH+E + RS+HP V + L D + EL +++ + K + R R
Sbjct: 202 AHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQ----KGVVDKRGKRKNRP 257
Query: 76 FAKALRSLGLRKGQVVI 92
KA SL LR G++ +
Sbjct: 258 ARKA--SLSLRSGRITL 272
>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|B Chain B, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|C Chain C, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|D Chain D, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|E Chain E, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|F Chain F, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|G Chain G, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|H Chain H, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|I Chain I, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2W|J Chain J, Peroxiredoxin (C50s) From Aeropytum Pernix K1
(Peroxide-Bound Form)
pdb|3A2X|A Chain A, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|B Chain B, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|C Chain C, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|D Chain D, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|E Chain E, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|F Chain F, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|G Chain G, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|H Chain H, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|I Chain I, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
pdb|3A2X|J Chain J, Peroxiredoxin (C50s) From Aeropyrum Pernix K1
(Acetate-Bound Form)
Length = 249
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 53 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 89
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 53 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 89
>pdb|1MM8|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With Me Dna
Length = 481
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 16 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
AH+E + RS+HP V + L D + EL +++ + K + R R
Sbjct: 206 AHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQ----KGVVDKRGKRKNRP 261
Query: 76 FAKALRSLGLRKGQVVI 92
KA SL LR G++ +
Sbjct: 262 ARKA--SLSLRSGRITL 276
>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|B Chain B, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|C Chain C, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|D Chain D, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|E Chain E, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|F Chain F, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|G Chain G, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|H Chain H, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|I Chain I, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
pdb|2ZCT|J Chain J, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent
Sulfur Intermediate
Length = 249
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 53 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 89
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 54 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 90
>pdb|1MUH|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
Transposon End Dna
Length = 481
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 16 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
AH+E + RS+HP V + L D + EL ++ ++ K + R R
Sbjct: 206 AHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQI----SIPQKGVVDKRGKRKNRP 261
Query: 76 FAKALRSLGLRKGQVVI 92
KA SL LR G++ +
Sbjct: 262 ARKA--SLSLRSGRITL 276
>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2NVL|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
Length = 250
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 54 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 90
>pdb|1MUS|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
Resolved Outside End Dna
Length = 477
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 16 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
AH+E + RS+HP V + L D + EL +++ + K + R R
Sbjct: 202 AHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQ----KGVVDKRGKRKNRP 257
Query: 76 FAKALRSLGLRKGQVVI 92
KA SL LR G++ +
Sbjct: 258 ARKA--SLSLRSGRITL 272
>pdb|3ECP|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With 5'
Phosphorylated Transposon End Dna
Length = 477
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 16 AHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRG 75
AH+E + RS+HP V + L D + EL +++ + K + R R
Sbjct: 202 AHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQ----KGVVDKRGKRKNRP 257
Query: 76 FAKALRSLGLRKGQVVI 92
KA SL LR G++ +
Sbjct: 258 ARKA--SLSLRSGRITL 272
>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|B Chain B, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|C Chain C, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|D Chain D, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|E Chain E, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|F Chain F, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|G Chain G, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|H Chain H, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|I Chain I, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
pdb|2CV4|J Chain J, Crystal Structure Of An Archaeal Peroxiredoxin From The
Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix
K1
Length = 250
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 54 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 90
>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|B Chain B, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|C Chain C, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|D Chain D, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|E Chain E, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|F Chain F, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|G Chain G, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|H Chain H, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|I Chain I, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|J Chain J, Thioredoxin Peroxidase From Aeropyrum Pernix K1
Length = 249
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 139 IVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIE 175
VS+A YE + LG+ +I L + + S I W E IE
Sbjct: 53 FVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIE 89
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 15/182 (8%)
Query: 13 LAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAY----TYAQ 68
L A ++E + + H + EN T P + +K + E GK Y Y
Sbjct: 15 LWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNK--YAEGYPGKRYFGGCEYVD 72
Query: 69 VA------RDTRGFAKALRSLGLRKG-QVVIVVLPNVAEYGIVALGI-MAAGGVFSGANP 120
+ R F ++ G Q V + E G LG+ +A GG + +P
Sbjct: 73 IVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSP 132
Query: 121 TAHASELKKQVDAA-DAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADK 179
+ +L V DA + YA + ++ K +I+ G ++W+++ E AD
Sbjct: 133 VNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADS 192
Query: 180 AG 181
G
Sbjct: 193 IG 194
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 15/182 (8%)
Query: 13 LAAAHDEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAY----TYAQ 68
L A ++E + + H + EN T P + +K + E GK Y Y
Sbjct: 15 LWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNK--YAEGYPGKRYYGGCEYVD 72
Query: 69 VA------RDTRGFAKALRSLGLRKG-QVVIVVLPNVAEYGIVALGI-MAAGGVFSGANP 120
+ R F ++ G Q V + E G LG+ +A GG + +P
Sbjct: 73 IVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSP 132
Query: 121 TAHASELKKQVDAA-DAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADK 179
+ +L V DA + YA + ++ K +I+ G ++W+++ E AD
Sbjct: 133 VNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADS 192
Query: 180 AG 181
G
Sbjct: 193 IG 194
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 51 DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110
D + FV +V RDT GF++ALRS LR+ +I+V + + + L + A
Sbjct: 160 DPIEFVHESKKCLVNQREVHRDTLGFSEALRS-ALREDPDIILV-GEMRDLETIRLALTA 217
Query: 111 AGG---VFSGANPTAHASELKKQVD 132
A VF + T+ A + + VD
Sbjct: 218 AETGHLVFGTLHTTSAAKTIDRVVD 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,319,766
Number of Sequences: 62578
Number of extensions: 611600
Number of successful extensions: 1622
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 106
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)