Query 039837
Match_columns 544
No_of_seqs 193 out of 1822
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 03:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 2.7E-84 9.2E-89 669.8 52.1 519 18-539 4-534 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 1.9E-81 6.4E-86 649.5 51.8 517 19-544 8-547 (548)
3 3rix_A Luciferase, luciferin 4 100.0 1.8E-80 6.2E-85 643.3 39.4 512 22-542 7-543 (550)
4 3g7s_A Long-chain-fatty-acid-- 100.0 7.6E-80 2.6E-84 638.5 43.8 503 26-541 10-543 (549)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.5E-80 8.7E-85 640.1 39.9 492 35-544 24-535 (539)
6 4fuq_A Malonyl COA synthetase; 100.0 3.2E-80 1.1E-84 634.0 40.3 488 40-542 4-502 (503)
7 3r44_A Fatty acyl COA syntheta 100.0 2.1E-80 7.2E-85 637.4 36.8 501 25-544 5-517 (517)
8 3etc_A AMP-binding protein; ad 100.0 8.6E-79 2.9E-83 632.3 47.3 497 32-541 51-580 (580)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.7E-78 9.1E-83 620.7 46.2 488 36-539 2-503 (504)
10 3tsy_A Fusion protein 4-coumar 100.0 2.1E-79 7.1E-84 675.9 38.1 521 20-542 45-584 (979)
11 3fce_A D-alanine--poly(phospho 100.0 4.8E-79 1.7E-83 627.8 36.7 487 36-541 1-505 (512)
12 3e7w_A D-alanine--poly(phospho 100.0 3.9E-78 1.3E-82 620.5 43.1 486 36-541 1-504 (511)
13 1amu_A GRSA, gramicidin synthe 100.0 7.4E-78 2.5E-82 623.6 44.0 511 2-537 4-526 (563)
14 1v25_A Long-chain-fatty-acid-C 100.0 6.3E-79 2.2E-83 630.0 35.6 501 34-543 16-539 (541)
15 3o83_A Peptide arylation enzym 100.0 3E-79 1E-83 632.9 32.1 494 33-541 27-541 (544)
16 3c5e_A Acyl-coenzyme A synthet 100.0 1.7E-76 5.7E-81 614.4 47.5 519 8-540 9-562 (570)
17 3ivr_A Putative long-chain-fat 100.0 1.3E-78 4.6E-83 624.0 31.3 487 34-541 4-502 (509)
18 1pg4_A Acetyl-COA synthetase; 100.0 1E-76 3.4E-81 625.3 45.0 498 37-542 77-623 (652)
19 3l8c_A D-alanine--poly(phospho 100.0 3.8E-77 1.3E-81 615.4 39.6 488 35-541 3-513 (521)
20 4gr5_A Non-ribosomal peptide s 100.0 7.6E-78 2.6E-82 625.9 33.1 486 33-537 72-568 (570)
21 2v7b_A Benzoate-coenzyme A lig 100.0 1.2E-75 3.9E-80 605.2 48.4 484 37-536 25-528 (529)
22 3rg2_A Enterobactin synthase c 100.0 3.6E-76 1.2E-80 618.6 44.5 492 32-541 23-535 (617)
23 4dg8_A PA1221; ANL superfamily 100.0 8.7E-77 3E-81 620.4 36.6 484 29-540 20-513 (620)
24 1ry2_A Acetyl-coenzyme A synth 100.0 1.5E-75 5.2E-80 616.3 43.4 499 37-541 83-638 (663)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 3.3E-76 1.1E-80 604.1 31.0 475 35-536 21-504 (505)
26 3ipl_A 2-succinylbenzoate--COA 100.0 1.5E-74 5.1E-79 593.1 37.4 478 36-541 1-498 (501)
27 2vsq_A Surfactin synthetase su 100.0 3.9E-74 1.3E-78 649.0 40.6 517 2-538 430-958 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 2.2E-73 7.6E-78 596.9 30.9 498 33-541 8-568 (590)
29 3ite_A SIDN siderophore synthe 100.0 5.9E-74 2E-78 596.8 26.2 492 31-540 15-543 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 2.6E-72 8.8E-77 587.7 33.5 502 30-543 15-566 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.2E-59 1.8E-63 476.0 25.6 397 28-437 16-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 9.5E-52 3.3E-56 402.6 19.0 314 185-542 39-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 6.6E-48 2.3E-52 388.0 23.7 322 187-533 90-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 7.4E-47 2.5E-51 381.2 20.5 324 186-535 95-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.2E-46 3.9E-51 379.1 21.1 321 186-533 93-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.8E-29 2E-33 244.2 16.2 234 186-447 94-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.6 5.7E-15 1.9E-19 116.0 7.7 95 436-532 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.6 7.9E-15 2.7E-19 115.5 8.6 95 436-531 1-101 (109)
39 4b2g_A GH3-1 auxin conjugating 98.5 4.9E-07 1.7E-11 91.1 12.3 163 299-488 301-493 (609)
40 4epl_A Jasmonic acid-amido syn 98.4 1.3E-06 4.5E-11 87.6 11.8 163 299-488 301-488 (581)
41 4eql_A 4-substituted benzoates 98.4 9.3E-07 3.2E-11 89.0 9.9 137 299-461 296-447 (581)
42 2y27_A Phenylacetate-coenzyme 91.8 0.93 3.2E-05 44.4 10.7 86 63-149 109-196 (437)
43 2y4o_A Phenylacetate-coenzyme 91.5 1.1 3.6E-05 44.1 10.8 86 63-149 111-198 (443)
44 3qov_A Phenylacetate-coenzyme 91.2 1.2 4E-05 43.6 10.8 86 63-149 105-192 (436)
45 3ipl_A 2-succinylbenzoate--COA 81.8 13 0.00044 36.9 12.3 97 49-149 161-265 (501)
46 3hgu_A EHPF; phenazine, antibi 81.4 5.2 0.00018 37.9 8.9 86 63-150 110-220 (369)
47 2d1s_A Luciferase, luciferin 4 75.4 13 0.00043 37.5 10.0 98 51-150 192-298 (548)
48 3o83_A Peptide arylation enzym 73.3 27 0.00092 35.0 11.9 97 49-149 189-295 (544)
49 1mdb_A 2,3-dihydroxybenzoate-A 73.1 30 0.001 34.5 12.2 97 49-149 180-286 (539)
50 3r44_A Fatty acyl COA syntheta 71.1 33 0.0011 34.1 11.8 96 49-149 168-272 (517)
51 3fce_A D-alanine--poly(phospho 70.4 19 0.00066 35.7 9.9 98 49-149 142-249 (512)
52 3rix_A Luciferase, luciferin 4 69.2 18 0.00063 36.3 9.5 88 62-150 208-296 (550)
53 3ivr_A Putative long-chain-fat 63.4 52 0.0018 32.5 11.5 96 49-149 158-262 (509)
54 3ezx_A MMCP 1, monomethylamine 62.6 30 0.001 29.7 8.2 92 226-321 93-194 (215)
55 4gs5_A Acyl-COA synthetase (AM 61.5 32 0.0011 32.2 9.0 96 48-149 34-137 (358)
56 3rg2_A Enterobactin synthase c 61.4 84 0.0029 31.9 12.8 97 49-149 182-288 (617)
57 3e7w_A D-alanine--poly(phospho 61.1 42 0.0014 33.2 10.3 98 49-149 141-248 (511)
58 1t5h_X 4-chlorobenzoyl COA lig 58.5 37 0.0013 33.5 9.3 97 49-149 151-258 (504)
59 3kxw_A Saframycin MX1 syntheta 58.2 33 0.0011 34.7 9.1 97 49-148 165-273 (590)
60 3c5e_A Acyl-coenzyme A synthet 57.3 61 0.0021 32.6 10.8 99 49-150 204-312 (570)
61 3g7s_A Long-chain-fatty-acid-- 53.5 28 0.00094 35.0 7.5 86 201-288 51-138 (549)
62 1v25_A Long-chain-fatty-acid-C 53.3 32 0.0011 34.5 7.9 86 200-287 45-132 (541)
63 3nyq_A Malonyl-COA ligase; A/B 51.5 1.1E+02 0.0037 30.1 11.4 96 49-149 153-257 (505)
64 3ni2_A 4-coumarate:COA ligase; 50.4 29 0.001 34.6 7.1 84 200-285 47-132 (536)
65 2v7b_A Benzoate-coenzyme A lig 48.2 30 0.001 34.4 6.8 83 201-285 47-131 (529)
66 4fuq_A Malonyl COA synthetase; 47.4 40 0.0014 33.3 7.4 82 200-283 26-109 (503)
67 1ry2_A Acetyl-coenzyme A synth 45.8 42 0.0014 34.6 7.5 81 200-282 111-194 (663)
68 1amu_A GRSA, gramicidin synthe 43.9 47 0.0016 33.4 7.4 85 201-287 63-149 (563)
69 1pg4_A Acetyl-COA synthetase; 40.5 53 0.0018 33.8 7.3 81 200-282 105-187 (652)
70 3etc_A AMP-binding protein; ad 40.0 52 0.0018 33.2 7.0 81 200-282 84-166 (580)
71 4dg8_A PA1221; ANL superfamily 39.5 98 0.0033 31.5 9.0 97 49-149 162-267 (620)
72 3tbh_A O-acetyl serine sulfhyd 39.2 87 0.003 28.9 7.9 92 51-144 35-127 (334)
73 4gr5_A Non-ribosomal peptide s 37.2 63 0.0021 32.5 7.1 82 201-284 99-182 (570)
74 2jwk_A Protein TOLR; periplasm 36.1 70 0.0024 21.4 5.1 36 37-74 31-66 (74)
75 3ju7_A Putative PLP-dependent 35.9 74 0.0025 29.9 7.0 60 79-141 69-135 (377)
76 3t5a_A Long-chain-fatty-acid-- 35.5 63 0.0021 31.5 6.7 88 200-290 56-148 (480)
77 3l8c_A D-alanine--poly(phospho 35.2 2.1E+02 0.007 28.1 10.5 100 49-149 143-252 (521)
78 4eez_A Alcohol dehydrogenase 1 34.0 73 0.0025 29.5 6.6 77 63-142 136-215 (348)
79 3gqw_A Fatty acid AMP ligase; 32.0 76 0.0026 31.8 6.8 86 200-287 47-141 (576)
80 2cvi_A 75AA long hypothetical 32.0 1.2E+02 0.0042 20.8 7.1 50 451-510 15-64 (83)
81 3ijw_A Aminoglycoside N3-acety 31.9 32 0.0011 30.6 3.4 25 74-98 18-42 (268)
82 3vc3_A Beta-cyanoalnine syntha 31.5 1.3E+02 0.0046 27.8 7.8 93 50-144 49-142 (344)
83 2jtq_A Phage shock protein E; 30.3 88 0.003 21.6 5.0 44 63-113 23-66 (85)
84 2nyg_A YOKD protein; PFAM02522 29.7 37 0.0013 30.4 3.4 24 75-98 17-40 (273)
85 3sma_A FRBF; N-acetyl transfer 29.6 37 0.0013 30.4 3.4 30 61-97 19-48 (286)
86 3ite_A SIDN siderophore synthe 27.5 1.1E+02 0.0039 30.4 7.1 79 201-282 54-134 (562)
87 3tsy_A Fusion protein 4-coumar 26.8 1E+02 0.0035 33.5 7.0 83 200-284 86-170 (979)
88 1o69_A Aminotransferase; struc 24.9 2.3E+02 0.0077 26.5 8.4 60 80-142 64-129 (394)
89 2pfu_A Biopolymer transport EX 24.8 1.3E+02 0.0045 21.5 5.2 44 36-85 42-85 (99)
90 1h2b_A Alcohol dehydrogenase; 24.2 1.7E+02 0.0057 27.2 7.2 61 79-142 176-238 (359)
91 3a2k_A TRNA(Ile)-lysidine synt 23.9 2.2E+02 0.0075 27.7 8.1 69 75-143 4-86 (464)
92 2e18_A NH(3)-dependent NAD(+) 23.8 1.9E+02 0.0064 25.3 7.0 68 72-142 9-82 (257)
93 1wy5_A TILS, hypothetical UPF0 23.4 3.1E+02 0.011 24.8 8.6 70 73-142 8-91 (317)
94 3s2e_A Zinc-containing alcohol 23.2 1.8E+02 0.0062 26.6 7.2 76 63-142 139-217 (340)
95 1ofu_X SULA, hypothetical prot 22.8 2.2E+02 0.0076 21.5 6.2 55 76-130 46-102 (119)
96 3dzz_A Putative pyridoxal 5'-p 22.4 2.1E+02 0.0072 26.4 7.7 54 85-141 106-166 (391)
97 1zsy_A Mitochondrial 2-enoyl t 22.4 1.7E+02 0.0058 27.1 6.8 79 63-142 139-223 (357)
98 3tla_A MCCF; serine protease, 22.2 2.5E+02 0.0084 26.3 7.7 61 84-144 39-118 (371)
99 3ri6_A O-acetylhomoserine sulf 21.6 2.5E+02 0.0086 26.8 8.0 14 130-143 141-154 (430)
100 1z7w_A Cysteine synthase; tran 21.4 2.8E+02 0.0095 25.2 7.9 91 51-144 30-122 (322)
101 2e7j_A SEP-tRNA:Cys-tRNA synth 20.8 3.5E+02 0.012 24.6 8.8 54 85-141 90-153 (371)
102 2djw_A Probable transcriptiona 20.6 2.2E+02 0.0077 19.8 5.9 49 451-509 15-63 (92)
103 1wxi_A NH(3)-dependent NAD(+) 20.4 4.5E+02 0.015 23.2 9.7 76 63-140 16-108 (275)
104 1y80_A Predicted cobalamin bin 20.4 2.4E+02 0.0082 23.6 6.8 82 62-143 55-147 (210)
105 1mdo_A ARNB aminotransferase; 20.3 2E+02 0.0068 26.7 7.0 59 80-142 71-134 (393)
106 1eg5_A Aminotransferase; PLP-d 20.3 2.7E+02 0.0091 25.6 7.9 55 86-141 87-145 (384)
107 2cf5_A Atccad5, CAD, cinnamyl 20.0 1.4E+02 0.0049 27.6 5.7 77 63-142 152-232 (357)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.7e-84 Score=669.84 Aligned_cols=519 Identities=39% Similarity=0.692 Sum_probs=454.6
Q ss_pred CcceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 039837 18 DEEHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97 (544)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n 97 (544)
++..++.+..++.+.+..+|+.+.|.++|+++|+++|+++..+++++||+||.++++++|++|++.|+++||+|+++++|
T Consensus 4 ~~~~i~~~~~~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPS 83 (536)
T ss_dssp -CCCCBCCSSCCCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred ccceEEecCCCCCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 44567888888888888899999999999999999999987667899999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccccccccCHHHH
Q 039837 98 VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEERIESAINWSEL 173 (544)
Q Consensus 98 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 173 (544)
++++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+.. ...+++.++. .......+.++
T Consensus 84 ~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (536)
T 3ni2_A 84 SPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDS-APDGCLHFSEL 162 (536)
T ss_dssp SHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSC-CCTTCEETHHH
T ss_pred cHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecC-CCCCccCHHHH
Confidence 999999999999999999999999999999999999999999999876655443 2344554442 22223334444
Q ss_pred HHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC--CcccCccEEEEecchhHHHHHHHHH
Q 039837 174 IEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV--PEMIGQVTTLGLIPFFHIYGITGIC 245 (544)
Q Consensus 174 ~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~ 245 (544)
...... ........+.+||||||.||||++||+++.+.+........ ..+..++++++.+|++|.+++...+
T Consensus 163 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 242 (536)
T 3ni2_A 163 TQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIM 242 (536)
T ss_dssp HTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTH
T ss_pred hhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHH
Confidence 332111 11233346789999999999999999999988766543221 2577899999999999999987778
Q ss_pred HhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhh
Q 039837 246 CATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKK 325 (544)
Q Consensus 246 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~ 325 (544)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......+++++|. +++||+++++++.++|.+.
T Consensus 243 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gGe~l~~~~~~~~~~~ 320 (536)
T 3ni2_A 243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRM--IKSGGAPLGKELEDTVRAK 320 (536)
T ss_dssp HHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCE--EEEESSCCCHHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceE--EEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999987766777888888 9999999999999999999
Q ss_pred cCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCCh
Q 039837 326 FPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNE 405 (544)
Q Consensus 326 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~ 405 (544)
||++++++.||+||++.+++.+............+++|+|+++++++|+|++++.+++.|+.|||+|+|++++.|||++|
T Consensus 321 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p 400 (536)
T 3ni2_A 321 FPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDP 400 (536)
T ss_dssp CTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred CCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCCh
Confidence 99999999999999997655432111122445678899999999999999888999999999999999999999999999
Q ss_pred hhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEE
Q 039837 406 EETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACV 485 (544)
Q Consensus 406 ~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 485 (544)
+.|.+.|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++++
T Consensus 401 ~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~v 480 (536)
T 3ni2_A 401 EATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV 480 (536)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred hHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEE
Confidence 99999998999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837 486 VMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539 (544)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~ 539 (544)
+..++...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.
T Consensus 481 v~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 481 VKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred EecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 998888889999999999999999999999999999999999999999999875
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.9e-81 Score=649.45 Aligned_cols=517 Identities=30% Similarity=0.460 Sum_probs=445.8
Q ss_pred cceeeecCCCCCCCCCCCCHHH-HHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 039837 19 EEHIFRSRHPAVPVPENVTLPD-FVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~-~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n 97 (544)
...++.+..+....+...|+.+ .|.++++++ +++|+++...++++||+||.++++++|++|++.|+++||+|+++++|
T Consensus 8 ~~~~~~~~~~~~~~p~~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n 86 (548)
T 2d1s_A 8 ENIVVGPKPFYPIEEGSAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSEN 86 (548)
T ss_dssp TTSEECCCCSSCCCSSCHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSS
T ss_pred cceEecCCCCCCCCCCcCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence 3345666666666666679999 899999999 99999985446899999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC------CCcEEEeccccc-ccccCH
Q 039837 98 VAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL------GLPIIVLGEERI-ESAINW 170 (544)
Q Consensus 98 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~ 170 (544)
+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+... ...++.++.... .....+
T Consensus 87 ~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (548)
T 2d1s_A 87 CEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCL 166 (548)
T ss_dssp CTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBH
T ss_pred chhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccH
Confidence 9999999999999999999999999999999999999999999998876554331 123333332110 112335
Q ss_pred HHHHHhhhh-------cC-----C-CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-CcccCccEEEEecchh
Q 039837 171 SELIEAADK-------AG-----N-NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFF 236 (544)
Q Consensus 171 ~~~~~~~~~-------~~-----~-~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~ 236 (544)
.++...... .. . .....+.+||||||.||||++||+++.+.+.+....+. .++.+++++++.+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 246 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFH 246 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHH
Confidence 555443210 01 1 22345689999999999999999999998877765511 2678899999999999
Q ss_pred HHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCH
Q 039837 237 HIYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAP 316 (544)
Q Consensus 237 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~ 316 (544)
|.+|+...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+.......++++++. +++||+++++
T Consensus 247 h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gG~~l~~ 323 (548)
T 2d1s_A 247 HGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVE--IASGGAPLSK 323 (548)
T ss_dssp SHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCE--EEECSSCCCH
T ss_pred HHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeE--EEEcCccCCH
Confidence 9999866677777 999999999899999999999999999999999999999876555566777777 9999999999
Q ss_pred hHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccc
Q 039837 317 DLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQC 396 (544)
Q Consensus 317 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~ 396 (544)
++.++|.+.|+++.+++.||+||++.+++... ......+++|+|+++++++|+|++++++++.|+.|||+++|++
T Consensus 324 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~ 398 (548)
T 2d1s_A 324 EVGEAVARRFNLPGVRQGYGLTETTSAIIITP-----EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPM 398 (548)
T ss_dssp HHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-----TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTT
T ss_pred HHHHHHHHHcCCCceeeccccccccceeeecC-----cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHH
Confidence 99999999998899999999999987665532 1235668899999999999999878999999999999999999
Q ss_pred ccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC
Q 039837 397 VMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE 476 (544)
Q Consensus 397 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 476 (544)
++.|||++|+.|...|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.
T Consensus 399 v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~ 478 (548)
T 2d1s_A 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPV 478 (548)
T ss_dssp SCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred HhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCcee-EEEEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837 477 AGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544 (544)
Q Consensus 477 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~~ 544 (544)
.|+.+++++++.++...+.++++++++++|+.+++|. .++++++||+|++||++|++|++++.+.|++
T Consensus 479 ~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 479 AGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred CCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 8889999999988777788999999999999999999 8999999999999999999999999988764
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.8e-80 Score=643.29 Aligned_cols=512 Identities=32% Similarity=0.504 Sum_probs=338.0
Q ss_pred eeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEE---EccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Q 039837 22 IFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFV---EAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV 98 (544)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~ 98 (544)
+...+.+..+.+ ..|+.+.|.++|+++|+++|++ +...++++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus 7 ~~~~~~~~~~~~-~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 85 (550)
T 3rix_A 7 IKKGPAPFYPLE-DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 85 (550)
T ss_dssp SEECCCCSSCCC-CSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred eeeCCCCCCCcc-cCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 444555555555 5699999999999999999965 544468999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCcE-EEeccc-ccccccCHH
Q 039837 99 AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLPI-IVLGEE-RIESAINWS 171 (544)
Q Consensus 99 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~-~~~~~~-~~~~~~~~~ 171 (544)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+... .... +.++.. .......+.
T Consensus 86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (550)
T 3rix_A 86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMY 165 (550)
T ss_dssp TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHH
T ss_pred ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHH
Confidence 999999999999999999999999999999999999999999998876655332 1233 333221 222344555
Q ss_pred HHHHhhhhcC-------------CCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-CcccCccEEEEecchhH
Q 039837 172 ELIEAADKAG-------------NNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFFH 237 (544)
Q Consensus 172 ~~~~~~~~~~-------------~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~ 237 (544)
.+........ ....+.+.+||||||.||||++||+++.+.+.+....+. .++.+++++++.+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 245 (550)
T 3rix_A 166 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 245 (550)
T ss_dssp HHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHH
Confidence 5544322110 112235679999999999999999999988877665421 26788999999999999
Q ss_pred HHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHh
Q 039837 238 IYGITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPD 317 (544)
Q Consensus 238 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~ 317 (544)
.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++++. +++||++++++
T Consensus 246 ~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gG~~l~~~ 322 (550)
T 3rix_A 246 GFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHE--IASGGAPLSKE 322 (550)
T ss_dssp HHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCE--EEECSSCCCHH
T ss_pred HHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccE--EEEecCCCCHH
Confidence 9998 56778899999999999999999999999999999999999999999987766777888887 99999999999
Q ss_pred HHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccc
Q 039837 318 LLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCV 397 (544)
Q Consensus 318 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~ 397 (544)
+.++|.+.|+...+++.||+||++..++... ......+++|+|+++++++|+|++++++++.|+.|||+|+|+++
T Consensus 323 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v 397 (550)
T 3rix_A 323 VGEAVAKRFHLPGIRQGYGLTETTSAILITP-----EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMI 397 (550)
T ss_dssp HHHHHHHHTTCSCCEEEEECGGGSSEEEECC-----TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTS
T ss_pred HHHHHHHHcCCCccccccCcCccccceecCC-----CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCc
Confidence 9999999995456999999999997776553 13456789999999999999998889999999999999999999
Q ss_pred cccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCC
Q 039837 398 MQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEA 477 (544)
Q Consensus 398 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 477 (544)
+.|||++|+.|...|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..
T Consensus 398 ~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 477 (550)
T 3rix_A 398 MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA 477 (550)
T ss_dssp CSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------------------------------
T ss_pred chhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCC
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCcee-EEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837 478 GEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVR-VLHFVDGIPKSHSGKIMRRILKDKMLEKM 542 (544)
Q Consensus 478 ~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~~P~t~~GKi~r~~l~~~~~~~~ 542 (544)
++.+++++++.++...+.++++++++++++.++.|. .++++++||+|++||++|++|++++.++.
T Consensus 478 g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 478 GELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp ------------------------------------------------------------------
T ss_pred CceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 999999999888777788999999999999886654 68899999999999999999999997654
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=7.6e-80 Score=638.49 Aligned_cols=503 Identities=30% Similarity=0.495 Sum_probs=395.5
Q ss_pred CCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc
Q 039837 26 RHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSG------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA 99 (544)
Q Consensus 26 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~ 99 (544)
..|+.+.+ .+|+.++|.++|+++|+++|+++...+ +++||+||.++++++|++|++.|+++||+|+++++|++
T Consensus 10 ~~p~~~~~-~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~ 88 (549)
T 3g7s_A 10 GFPSLYYP-KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI 88 (549)
T ss_dssp CCCCCCCC-CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred CCCCCCcC-CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH
Confidence 33444444 579999999999999999999987311 78999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccccccccCHHHHHH
Q 039837 100 EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEERIESAINWSELIE 175 (544)
Q Consensus 100 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 175 (544)
++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.. .....+.+.. .....+.++..
T Consensus 89 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 165 (549)
T 3g7s_A 89 DYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG---GEVNSLSEVMD 165 (549)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEET---CSSSCHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeC---CCCcCHHHHHh
Confidence 9999999999999999999999999999999999999999999887665533 2233332221 12334555544
Q ss_pred hhhhc------CC-CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhh
Q 039837 176 AADKA------GN-NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT 248 (544)
Q Consensus 176 ~~~~~------~~-~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 248 (544)
..... .. ...+.+.+||||||.||||++||+++.+.+......+ ++...++++..+|++|.+++.. ++.+
T Consensus 166 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~~~~~-~~~~ 242 (549)
T 3g7s_A 166 SGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT--GLSHMDTIVGCMPMFHSAEFGL-VNLM 242 (549)
T ss_dssp HSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH--CCCTTCEEECCSCTTSHHHHHH-HTTH
T ss_pred cCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc--CCCCCCEEEEeCcHHHHHHHHH-HHHH
Confidence 32211 01 2334678999999999999999999999988887777 7889999999999999999854 8889
Q ss_pred HhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCc--cCccccccccEEEecCCCCHhHHHHHHhh-
Q 039837 249 LRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDE--FDLSKLQLRAVMTAAAPLAPDLLSSFEKK- 325 (544)
Q Consensus 249 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~~~~l~~~~v~~~G~~~~~~~~~~~~~~- 325 (544)
+..|+++++.+.+++..+++.++++++|+++++|+++..|++...... .++++++. +++||+++++++.+++.+.
T Consensus 243 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--~~~gg~~l~~~~~~~~~~~~ 320 (549)
T 3g7s_A 243 VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKV--FATGAWPVAPALVEKLLKLA 320 (549)
T ss_dssp HHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCE--EEEESSCCCHHHHHHHHHHH
T ss_pred HhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeE--EEeCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987543322 56677777 9999999999999999987
Q ss_pred ---c--CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccccc
Q 039837 326 ---F--PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG 400 (544)
Q Consensus 326 ---~--~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g 400 (544)
+ |++++++.||+||++.+++... ........++|+|+++++++|+|++++++++.|+.|||+|+|++++.|
T Consensus 321 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G 396 (549)
T 3g7s_A 321 AEKCNNPRLRHNQIWGMTEACPMVTTNP----PLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396 (549)
T ss_dssp HHHSSCTTCEEEEEEECGGGSSEEEECC----GGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSE
T ss_pred HhhcCCccccccceEeccccchhhhcCC----ccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhh
Confidence 5 2389999999999998776543 112245678999999999999998899999999999999999999999
Q ss_pred ccCChhhhhcccC--CCC--eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC
Q 039837 401 YYNNEEETARTID--KNG--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE 476 (544)
Q Consensus 401 y~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 476 (544)
||++|+.|.+.|. .+| ||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.
T Consensus 397 Y~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 476 (549)
T 3g7s_A 397 YWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEE 476 (549)
T ss_dssp ETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC--
T ss_pred hCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccc
Confidence 9999999998873 566 999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeEEEEEeCCC--CCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 477 AGEIPAACVVMNPN--AKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 477 ~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
.++.+++++++.++ ...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus 477 ~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 477 AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp ----CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------
T ss_pred cCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence 89999999999877 567889999999999999999999999999999999999999999988654
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.5e-80 Score=640.14 Aligned_cols=492 Identities=24% Similarity=0.364 Sum_probs=422.7
Q ss_pred CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837 35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV 114 (544)
Q Consensus 35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 114 (544)
..|+.++|.++|+++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 469999999999999999999986 689999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHhcCceEEEeccchH--------HHhhc-C-CCc-EEEecccccccccCHHHHHHhh------
Q 039837 115 FSGANPTAHASELKKQVDAADAKLIVSYAPIY--------EKVKG-L-GLP-IIVLGEERIESAINWSELIEAA------ 177 (544)
Q Consensus 115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~------ 177 (544)
++|+++.++.+++.++++.++++++|++++.. ..+.. . .+. ++..+... . +..+....
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 176 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE--E---FLPLEDLHTEPVKL 176 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT--T---SEEGGGCCCCCCCC
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc--c---hhhhhhcccccccc
Confidence 99999999999999999999999999987531 11211 1 122 22222110 0 00000000
Q ss_pred hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccceEE
Q 039837 178 DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGKVV 256 (544)
Q Consensus 178 ~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~ 256 (544)
........+.+.+||||||.||||++||+++.+.+......+ ++..++++++.+|++|.+++.. .++.++..|++++
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh--CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 011122334578999999999999999999999888777666 7788999999999999999855 6889999999999
Q ss_pred EcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEeccc
Q 039837 257 MMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYG 336 (544)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG 336 (544)
+.+.+++..+++.++++++|++.++|+++..|++.......+++++|. +++||+++++++.++|.+.+ ++++++.||
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG 331 (539)
T 1mdb_A 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV--LQVGGAKFSAEAARRVKAVF-GCTLQQVFG 331 (539)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCE--EEEESSCCCHHHHTTHHHHT-CSEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeE--EEEcCCCCCHHHHHHHHHHh-CCcEEEEEc
Confidence 999899999999999999999999999999998765444556788777 99999999999999999988 899999999
Q ss_pred CccccccccccCCCCCCCCCCCCCcccccCCCc-eEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837 337 LTEHSCITLTYGDPANPSAGSKKNSVGFILPNL-EVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN 415 (544)
Q Consensus 337 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 415 (544)
+||++..+.... .......+++|+|+++. +++|+| +++++++.|+.|||+|+|++++.|||++|+.|...|..+
T Consensus 332 ~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 406 (539)
T 1mdb_A 332 MAEGLVNYTRLD----DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED 406 (539)
T ss_dssp CTTSCEEECCTT----SCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred CCCCcccccCCC----CcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCC
Confidence 999654332211 00112346899999764 799999 689999999999999999999999999999999999889
Q ss_pred CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 039837 416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE 495 (544)
Q Consensus 416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 495 (544)
|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.+++++++.. ...+.
T Consensus 407 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~ 485 (539)
T 1mdb_A 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKA 485 (539)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCH
T ss_pred CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999998888889999998873 45678
Q ss_pred HHHHHHHHhc-ccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837 496 DDIMDFVASN-VATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544 (544)
Q Consensus 496 ~~l~~~l~~~-l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~~ 544 (544)
++++++++++ |+.|++|..++++++||+|++||++|++|++++.++|++
T Consensus 486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (539)
T ss_dssp HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence 9999999998 999999999999999999999999999999999998864
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3.2e-80 Score=633.96 Aligned_cols=488 Identities=25% Similarity=0.386 Sum_probs=423.5
Q ss_pred HHHHhhhhhcCCceEEEE-ccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecC
Q 039837 40 DFVLQDAELYADKVAFVE-AVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGA 118 (544)
Q Consensus 40 ~~l~~~a~~~p~~~a~~~-~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 118 (544)
++|.+.|+++|++.++.. ..+++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 467889999999998874 2236899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccccccccCHHHHHHhhhh------cCCCCCCCC
Q 039837 119 NPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEERIESAINWSELIEAADK------AGNNFSNDD 188 (544)
Q Consensus 119 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 188 (544)
++.++.+++.+++++++++++|++.+..+.+.. ....+..++... ...+......... ......+.+
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~a~i 160 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDG---RGSLTDAAAGASEAFATIDRGADDLAAI 160 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTS---CSHHHHHHHTSCSCCCCCCCCTTSEEEE
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCc---ccccchhhhcCCCCcCcCCCCCCCeEEE
Confidence 999999999999999999999998765443322 122233332111 1111111111110 111223457
Q ss_pred CCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHH
Q 039837 189 DVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLD 268 (544)
Q Consensus 189 ~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 268 (544)
.+||||||.||||++||+++.+.+......+ ++.++++++..+|++|.+|+...++.++..|+++++.+.+++..+++
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 238 (503)
T 4fuq_A 161 LYTSGTTGRSKGAMLSHDNLASNSLTLVDYW--RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILD 238 (503)
T ss_dssp EECC--CCSCCEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHH
T ss_pred EECCCcccCCeEEEEeHHHHHHHHHHHHHHh--CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHH
Confidence 8999999999999999999999988888777 78899999999999999987666778899999999999999999999
Q ss_pred HHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccC
Q 039837 269 ALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYG 348 (544)
Q Consensus 269 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 348 (544)
.++ ++|++.++|+++..|++........+++++. +++||+++++++.++|.+.+ +++++|.||+||++..+...
T Consensus 239 ~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~- 312 (503)
T 4fuq_A 239 LMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRL--FISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNP- 312 (503)
T ss_dssp HHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCE--EEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCC-
T ss_pred HHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEE--EEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccC-
Confidence 998 8999999999999999987766667778777 99999999999999999998 88999999999998764322
Q ss_pred CCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC
Q 039837 349 DPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD 428 (544)
Q Consensus 349 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~ 428 (544)
.......+++|+|+++++++|+|++++++++.|+.|||+|+|++++.|||++|+.|...|..+|||+|||+|++++
T Consensus 313 ----~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~ 388 (503)
T 4fuq_A 313 ----YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE 388 (503)
T ss_dssp ----SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT
T ss_pred ----CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC
Confidence 1234556789999999999999988999999999999999999999999999999999998899999999999999
Q ss_pred CCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccC
Q 039837 429 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVAT 508 (544)
Q Consensus 429 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~ 508 (544)
||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++++..++...+.++++++++++|+.
T Consensus 389 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~ 468 (503)
T 4fuq_A 389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAK 468 (503)
T ss_dssp TCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCG
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999889999999999888888999999999999999
Q ss_pred CCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837 509 YKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542 (544)
Q Consensus 509 ~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~ 542 (544)
|++|..++++++||+|++||++|++|+++|++..
T Consensus 469 ~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 469 FKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp GGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred CCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 9999999999999999999999999999986543
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.1e-80 Score=637.44 Aligned_cols=501 Identities=25% Similarity=0.380 Sum_probs=425.5
Q ss_pred cCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHH
Q 039837 25 SRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIV 104 (544)
Q Consensus 25 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 104 (544)
++......+...|+.++|.++|+++|+++|+++...++++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 5 HHHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp -------CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred ccccCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 34445566778899999999999999999999874445999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC------CcEEEecccccccccCHHHHHHhhh
Q 039837 105 ALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG------LPIIVLGEERIESAINWSELIEAAD 178 (544)
Q Consensus 105 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (544)
+|||+++|++++|+++.++.+++.+++++++++++|++......+.... ..++.... ...+........
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 159 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG-----ADSLAERLRSAA 159 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE-----HHHHHHHHHHCC
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC-----cccHHHHhhccC
Confidence 9999999999999999999999999999999999999987765543321 01111110 011222222111
Q ss_pred hc------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhcc
Q 039837 179 KA------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNK 252 (544)
Q Consensus 179 ~~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 252 (544)
.. .......+.+||||||.||||++||+++.+.+......+ ++..+++++..+|++|.+++...++..+ .|
T Consensus 160 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G 236 (517)
T 3r44_A 160 ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--DVRYRDRLLLPLPMFHVAALTTVIFSAM-RG 236 (517)
T ss_dssp CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS--CCCTTCEEEECSCTTSHHHHHHHHHHHH-HT
T ss_pred cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc--CCCCCCEEEEeCchHHHHHHHHHHHHHh-cC
Confidence 11 112233578999999999999999999999998888777 7889999999999999999855555555 99
Q ss_pred ceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEE
Q 039837 253 GKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ 332 (544)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~ 332 (544)
+++++.+.+++..+++.++++++|++.++|+++..|.+.......+++++|. +++||+++++++.++|.+. +++++
T Consensus 237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRY--FITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCE--EEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccE--EEECCCCCCHHHHHHHHhc--CCcEE
Confidence 9999999999999999999999999999999999998876555566777777 9999999999999999986 89999
Q ss_pred ecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc
Q 039837 333 EAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI 412 (544)
Q Consensus 333 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 412 (544)
+.||+||++..++.... .......+++|+|+++++++++| +++.+++.| .|||+|+|++++.|||++|+.|.+.|
T Consensus 313 ~~YG~TE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f 387 (517)
T 3r44_A 313 QGYALTESCGGGTLLLS---EDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 387 (517)
T ss_dssp EEEECGGGTTCEEEECG---GGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE
T ss_pred EeecccccccceeecCC---ccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh
Confidence 99999999876654431 11245667899999999999999 688888888 89999999999999999999999999
Q ss_pred CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC
Q 039837 413 DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK 492 (544)
Q Consensus 413 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 492 (544)
.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++ ..++..
T Consensus 388 -~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~ 465 (517)
T 3r44_A 388 -DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNE 465 (517)
T ss_dssp -ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTT
T ss_pred -cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999888888888887 556667
Q ss_pred CCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhhC
Q 039837 493 ESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMRK 544 (544)
Q Consensus 493 ~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~~ 544 (544)
.+.++++++++++|+.|++|..++++++||+|++||++|++|+++|.+++.+
T Consensus 466 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~k 517 (517)
T 3r44_A 466 VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVPK 517 (517)
T ss_dssp CCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCCC
T ss_pred CCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhccC
Confidence 8889999999999999999999999999999999999999999999888754
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8.6e-79 Score=632.32 Aligned_cols=497 Identities=24% Similarity=0.359 Sum_probs=407.5
Q ss_pred CCCCCCHH-HHHHhhhhhcCCceEEEEcc---CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHH
Q 039837 32 VPENVTLP-DFVLQDAELYADKVAFVEAV---SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALG 107 (544)
Q Consensus 32 ~~~~~~l~-~~l~~~a~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA 107 (544)
.+...|+. ++|+++|+++|+++|+++.+ .++++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA 130 (580)
T 3etc_A 51 VPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLG 130 (580)
T ss_dssp CCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34556776 99999999999999998632 236899999999999999999999999999999999999999999999
Q ss_pred HHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH--HHhhc-------CCCcEEEecccccccccCHHHHHHhhh
Q 039837 108 IMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY--EKVKG-------LGLPIIVLGEERIESAINWSELIEAAD 178 (544)
Q Consensus 108 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (544)
|+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.. .....+.++.........+.+......
T Consensus 131 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (580)
T 3etc_A 131 LHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESS 210 (580)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSC
T ss_pred HHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCC
Confidence 999999999999999999999999999999999987643 33221 113344444333444455555554322
Q ss_pred hc----------CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhh
Q 039837 179 KA----------GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCAT 248 (544)
Q Consensus 179 ~~----------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 248 (544)
.. .......+.+||||||.||||.++|.++...+....... ++...++++...|++|..+++..++.+
T Consensus 211 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (580)
T 3etc_A 211 PIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ--NVEDDGLHYTVADSGWGKCVWGKLYGQ 288 (580)
T ss_dssp SCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS--CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred cccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh--CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence 11 112233567899999999999999999888776655555 778899999999999988886678889
Q ss_pred HhccceEEEc--CccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhc
Q 039837 249 LRNKGKVVMM--NRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKF 326 (544)
Q Consensus 249 l~~G~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~ 326 (544)
+..|+++++. ..+++..+++.++++++|+++++|+++..|++.. ....+++++|. +++||+++++++.++|.+.+
T Consensus 289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~--i~~gGe~l~~~~~~~~~~~~ 365 (580)
T 3etc_A 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKY--AVVAGEPLNPEVFNRFLEFT 365 (580)
T ss_dssp HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCE--EEECSSCCCHHHHHHHHHHH
T ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceE--EEEccCCCCHHHHHHHHHHh
Confidence 9999999987 5689999999999999999999999999998863 34556778777 99999999999999999988
Q ss_pred CCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec-----ccccccc
Q 039837 327 PGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS-----QCVMQGY 401 (544)
Q Consensus 327 ~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~gy 401 (544)
++++++.||+||++..++... ......+++|+|+++++++|+| ++|++++.|+.|||+|+| +.++.||
T Consensus 366 -g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY 438 (580)
T 3etc_A 366 -GIKLMEGFGQTETVVTIATFP-----WMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHY 438 (580)
T ss_dssp -SCCCEEEECCTTSSCCEECCT-----TSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEE
T ss_pred -CCeEecccccccccceeecCC-----CCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccc
Confidence 899999999999987665442 1345678999999999999999 579999999999999997 7899999
Q ss_pred cCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCcee
Q 039837 402 YNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIP 481 (544)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 481 (544)
|++|+.|.+.| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.+
T Consensus 439 ~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~ 517 (580)
T 3etc_A 439 GKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVI 517 (580)
T ss_dssp TTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEE
Confidence 99999999999 68999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEEEeCCCCCCCH---HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 482 AACVVMNPNAKESE---DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 482 ~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
++++++.++...+. ++|+++++++|+.|++|..++++++||+|++|||+|++|++++++|
T Consensus 518 ~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 518 KATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 99999988765443 6899999999999999999999999999999999999999998764
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.7e-78 Score=620.68 Aligned_cols=488 Identities=23% Similarity=0.320 Sum_probs=414.6
Q ss_pred CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837 36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF 115 (544)
Q Consensus 36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 115 (544)
+|+.++|.++|+++|+++|+.+...++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999986446899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHhcCceEEEe--ccchHHHh-hcC-CCcEEEecccccccc-cCHHHHHHhhhhcCCCCCCCCCC
Q 039837 116 SGANPTAHASELKKQVDAADAKLIVS--YAPIYEKV-KGL-GLPIIVLGEERIESA-INWSELIEAADKAGNNFSNDDDV 190 (544)
Q Consensus 116 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 190 (544)
+|+++.++.+++.+++++++++++++ +.+..+.+ ... ..+++..++...... ....... ..........+.+.+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~ 160 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPI-EDPQREPAQPAFIFY 160 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTEETTEECCCSCCC-CCCCCCTTSEEEEEE
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchhhcCcccccCCcc-CCCCCCCCCeEEEEe
Confidence 99999999999999999999999999 76655544 222 122222211100000 0000000 000111223346789
Q ss_pred CCCCCcCcceeeccHHHHHHHHHhhccccCCcc--cCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHH
Q 039837 191 KQTDLWISKGVMLTHRNLVANLCSTLFSVVPEM--IGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLD 268 (544)
Q Consensus 191 tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 268 (544)
||||||.||||++||+++.+.+.+....+ ++ ...+++++.+|++|.+|+...++.++..|+++++.+.+++..+++
T Consensus 161 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 238 (504)
T 1t5h_X 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQV--GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQ 238 (504)
T ss_dssp CCC---CCCEEEEEGGGHHHHHHHHHHTT--CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHH
T ss_pred CCCCCCCCCEEEecHHHHHHHHHHHHHhh--CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHH
Confidence 99999999999999999999888776666 55 788999999999999998667889999999999999999999999
Q ss_pred HHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccc
Q 039837 269 ALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT 346 (544)
Q Consensus 269 ~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~ 346 (544)
.++++++|++.++|+++..|++... ....+++++|. +++||+++++++.++|.+.+ ++.+++.||+||++... .
T Consensus 239 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~--~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~-~ 314 (504)
T 1t5h_X 239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH--VTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSL-Y 314 (504)
T ss_dssp HHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCE--EEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEE-E
T ss_pred HHHHhCCeEEEeChHHHHHHHhhhccccccccCccccE--EEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccccccc-c
Confidence 9999999999999999999987542 23445677777 99999999999999999999 78999999999994322 2
Q ss_pred cCCCCCCCCCCCCCcccccCCCceEEEEeCCCC---CcCCCCCCceEEEe-cccccccccCChhhhhcccCCCCeeecCc
Q 039837 347 YGDPANPSAGSKKNSVGFILPNLEVKFINPETG---KSLPSNTPGELCVR-SQCVMQGYYNNEEETARTIDKNGWLHTGD 422 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 422 (544)
. .....+++|.|.++++++++|. ++ ++++.|+.|||+++ |+.++.||+++|+.|.+.| .+|||+|||
T Consensus 315 ~-------~~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGD 385 (504)
T 1t5h_X 315 M-------RQPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSD 385 (504)
T ss_dssp E-------ESCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEE
T ss_pred c-------cCCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCc
Confidence 1 1234578999999999999994 55 89999999999999 9999999999999999999 789999999
Q ss_pred eEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 039837 423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFV 502 (544)
Q Consensus 423 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l 502 (544)
+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.+++++++.++...+.+++.+++
T Consensus 386 lg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~ 465 (504)
T 1t5h_X 386 VAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFC 465 (504)
T ss_dssp EEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred EEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999887777889999999
Q ss_pred Hh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837 503 AS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539 (544)
Q Consensus 503 ~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~ 539 (544)
++ +|+.|++|..++++++||+|++||++|++|+++|+
T Consensus 466 ~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 466 RSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred hhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 98 99999999999999999999999999999999874
No 10
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.1e-79 Score=675.88 Aligned_cols=521 Identities=37% Similarity=0.650 Sum_probs=355.1
Q ss_pred ceeeecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc
Q 039837 20 EHIFRSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA 99 (544)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~ 99 (544)
+.++.+..++.+.+..+|+.++|.++++++|+++|+++...++++||+||.++++++|++|++.|+++||+|+++++|++
T Consensus 45 ~~~~~~~~~~~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~ 124 (979)
T 3tsy_A 45 DVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP 124 (979)
T ss_dssp CCCBCCSSCCCCCCTTSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH
T ss_pred CceeecCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH
Confidence 33466777888888889999999999999999999998766789999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----CCCcEEEecccc----cccccCHH
Q 039837 100 EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----LGLPIIVLGEER----IESAINWS 171 (544)
Q Consensus 100 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~ 171 (544)
++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+.. ....++.++... ......+.
T Consensus 125 e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (979)
T 3tsy_A 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT 204 (979)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGG
T ss_pred HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHH
Confidence 9999999999999999999999999999999999999999999876544332 233444443211 01111122
Q ss_pred HHHHhh---------hhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC--CcccCccEEEEecchhHHHH
Q 039837 172 ELIEAA---------DKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV--PEMIGQVTTLGLIPFFHIYG 240 (544)
Q Consensus 172 ~~~~~~---------~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g 240 (544)
++.... ..........+.|||||||.||||++||+++.+.+........ ..+.+.+++++.+|++|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 284 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence 211100 0112233446789999999999999999999988776544221 25778999999999999999
Q ss_pred HHHHHHhhHhccceEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHH
Q 039837 241 ITGICCATLRNKGKVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLS 320 (544)
Q Consensus 241 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~ 320 (544)
+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......+++++|. +++||+++++++.+
T Consensus 285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--~~~gg~~l~~~~~~ 362 (979)
T 3tsy_A 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRV--VKSGAAPLGKELED 362 (979)
T ss_dssp HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCE--EEESSCCCCSSHHH
T ss_pred HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEE--EEEcCCCCCHHHHH
Confidence 8777889999999999999999999999999999999999999999999887666677888888 99999999999999
Q ss_pred HHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEeccccccc
Q 039837 321 SFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQG 400 (544)
Q Consensus 321 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~g 400 (544)
+|.+.||+++++|.||+||++.+++..............+++|+|+++++++|+|++++++++.|+.|||+|+|+.++.|
T Consensus 363 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~G 442 (979)
T 3tsy_A 363 AVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442 (979)
T ss_dssp HHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCcccc
Confidence 99999999999999999999976654321111223456788999999999999998889999999999999999999999
Q ss_pred ccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCce
Q 039837 401 YYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEI 480 (544)
Q Consensus 401 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 480 (544)
||++|+.|.+.|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.
T Consensus 443 Y~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~ 522 (979)
T 3tsy_A 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEV 522 (979)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------
T ss_pred ccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837 481 PAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542 (544)
Q Consensus 481 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~ 542 (544)
++++++..++...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+.+
T Consensus 523 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 523 PVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 99999988777778889999999999999999999999999999999999999999998765
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=4.8e-79 Score=627.81 Aligned_cols=487 Identities=20% Similarity=0.241 Sum_probs=417.0
Q ss_pred CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837 36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF 115 (544)
Q Consensus 36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 115 (544)
|||.+.|.++|+++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhh--------hcCCCCCCC
Q 039837 116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAAD--------KAGNNFSND 187 (544)
Q Consensus 116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 187 (544)
+|+++.++.+++.++++.+++++++++...... ......+..+ .+........ .........
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~a~ 148 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT--DLPVRIVSED--------NLKDIFFTHKGNTPNPEHAVKGDENFY 148 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--CCSSEEEETH--------HHHHHHHHTTTCCCCGGGSCCTTSEEE
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc--ccccceechh--------hhhhhcccccccCCCccccCCCCCeEE
Confidence 999999999999999999999999987543211 1111111110 1111111100 111223345
Q ss_pred CCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHH
Q 039837 188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELR 264 (544)
Q Consensus 188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~ 264 (544)
+.+||||||.||||++||+++.+.+.+....+ ++..+++++..+|++|.+++ ..++.++..|+++++.+. .++.
T Consensus 149 i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~ 225 (512)
T 3fce_A 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF--NLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPK 225 (512)
T ss_dssp EEEECC----CEEEEEEHHHHHHHHHHHHHHT--TCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHH
T ss_pred EEECCCCCCCCceEEEehHHHHHHHHHHHHhc--CCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHH
Confidence 78999999999999999999999998887777 78899999999999999997 568899999999999886 6899
Q ss_pred HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837 265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT 344 (544)
Q Consensus 265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 344 (544)
.+++.++++++|++.++|+++..++.........+++++. +++||+++++++.++|.+.|+++++++.||+||++..+
T Consensus 226 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 303 (512)
T 3fce_A 226 DLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKT--FLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAV 303 (512)
T ss_dssp HHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCS
T ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccE--EEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhe
Confidence 9999999999999999999999999887766677888777 99999999999999999999999999999999998776
Q ss_pred cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc---CCCCeeecC
Q 039837 345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI---DKNGWLHTG 421 (544)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~TG 421 (544)
+...............++|+|+++++++|+| ++|.+++.|+.|||+++||+++.|||++|+.|.+.| ++++||+||
T Consensus 304 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG 382 (512)
T 3fce_A 304 TGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG 382 (512)
T ss_dssp EEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred eeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence 5432111100123557899999999999999 789999999999999999999999999999999887 457899999
Q ss_pred ceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH----HH
Q 039837 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE----DD 497 (544)
Q Consensus 422 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~ 497 (544)
|+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++...++.+++++++.++..... ++
T Consensus 383 Dlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~ 461 (512)
T 3fce_A 383 DAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA 461 (512)
T ss_dssp EEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHH
T ss_pred ceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHH
Confidence 99999 89999999999999999999999999999999999999999999998888888999999876654443 57
Q ss_pred HHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 498 l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
++++++++|+.|++|..++++++||+|++||++|++|+++++++
T Consensus 462 l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 462 IKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp HHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred HHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 88999999999999999999999999999999999999998754
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.9e-78 Score=620.50 Aligned_cols=486 Identities=20% Similarity=0.269 Sum_probs=419.6
Q ss_pred CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837 36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAGGV 114 (544)
Q Consensus 36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 114 (544)
||+.+.|.++|+++|+++|+++. ++++||+||.++++++|.+|++. |.++||+|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 58999999999999999999986 78999999999999999999875 8889999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhh-------hhcCCCCCCC
Q 039837 115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAA-------DKAGNNFSND 187 (544)
Q Consensus 115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 187 (544)
++|+++.++.+++.++++.++++++|++..............+. +.++.... ..........
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~ 147 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVS-----------AEELLENEGGSVSQDQWVKEHETFY 147 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEE-----------HHHHHTSCSCCCCGGGSCCTTSEEE
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceec-----------HhhhhccccCCccccccCCCCCeEE
Confidence 99999999999999999999999999965532211111122221 11211110 0112223346
Q ss_pred CCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc---cCHH
Q 039837 188 DDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR---FELR 264 (544)
Q Consensus 188 ~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~ 264 (544)
+.+||||||.||||++||+++.+.+.+....+ ++..+++++..+|++|.+++ ..++.++..|+++++.+. .++.
T Consensus 148 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~ 224 (511)
T 3e7w_A 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADF--PVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPK 224 (511)
T ss_dssp EEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS--TTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHH
T ss_pred EEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc--CCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHH
Confidence 78999999999999999999999998887777 78899999999999999987 568899999999999876 6899
Q ss_pred HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837 265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT 344 (544)
Q Consensus 265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 344 (544)
.+++.++++++|++.++|+++..+++........+++++. +++||+++++++.+++.+.||++++++.||+||++..+
T Consensus 225 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~--~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 302 (511)
T 3e7w_A 225 VLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADT--FMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAV 302 (511)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCS
T ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccE--EEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeee
Confidence 9999999999999999999999999887666667788777 99999999999999999999999999999999998766
Q ss_pred cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccC---CCCeeecC
Q 039837 345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID---KNGWLHTG 421 (544)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~~~~~TG 421 (544)
+...............++|+|+++++++|+| ++|++++.|+.|||+|+|++++.|||++|+.|.+.|. +..||+||
T Consensus 303 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG 381 (511)
T 3e7w_A 303 TSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG 381 (511)
T ss_dssp EEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE
T ss_pred eEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC
Confidence 5432111111234556799999999999999 6799999999999999999999999999999998872 22379999
Q ss_pred ceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH----HH
Q 039837 422 DIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE----DD 497 (544)
Q Consensus 422 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~ 497 (544)
|+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++..... ++
T Consensus 382 Dlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~ 460 (511)
T 3e7w_A 382 DAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSA 460 (511)
T ss_dssp EEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHH
T ss_pred CeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHH
Confidence 99999 69999999999999999999999999999999999999999999998888899999999887655443 67
Q ss_pred HHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 498 IMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 498 l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
++++++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus 461 l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 461 IKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp HHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 88899999999999999999999999999999999999998754
No 13
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.4e-78 Score=623.59 Aligned_cols=511 Identities=18% Similarity=0.251 Sum_probs=418.6
Q ss_pred CCCCcceeeccccccCCcceee-ecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837 2 AMPNSFSVPVPLAAAHDEEHIF-RSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL 80 (544)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L 80 (544)
++++..+..+.+..+++..+.. .++....+.+...|+.++|.++|+++|+++|+++. ++++||+||.++++++|++|
T Consensus 4 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L 81 (563)
T 1amu_A 4 SSKSILIHAQNKNGTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIF 81 (563)
T ss_dssp -------------CCCHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHH
T ss_pred cCCCccccccccCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHH
Confidence 3567778888888888777664 35556666677789999999999999999999986 78999999999999999999
Q ss_pred HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC--CcEEE
Q 039837 81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPIIV 158 (544)
Q Consensus 81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~ 158 (544)
++.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.... ..+..
T Consensus 82 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 161 (563)
T 1amu_A 82 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEI 161 (563)
T ss_dssp HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEE
T ss_pred HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceee
Confidence 9999999999999999999999999999999999999999999999999999999999999987766554432 12222
Q ss_pred ecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHH
Q 039837 159 LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI 238 (544)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 238 (544)
++......... . ...........+.+.+||||||.||||++||+++.+.+.+....+ ++..+++++..+|++|.
T Consensus 162 ~~~~~~~~~~~-~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~ 235 (563)
T 1amu_A 162 FEEDTIKIREG-T---NLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL--NVTEKDRIGQFASISFD 235 (563)
T ss_dssp CCCSTTTTSCC-S---CCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS--CCCTTCEEEECSCTTST
T ss_pred ecchhhccccC-c---cCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc--CCCCCCEEEEeCCccHH
Confidence 22111000000 0 000011122334678999999999999999999999888777766 78899999999999999
Q ss_pred HHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCC
Q 039837 239 YGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA 315 (544)
Q Consensus 239 ~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~ 315 (544)
.++ ..++.++..|+++++.+. .++..+++.++++++|++.++|+++..|... .+++++. +++||++++
T Consensus 236 ~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~--~~~gG~~l~ 306 (563)
T 1amu_A 236 ASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQT--LITAGSATS 306 (563)
T ss_dssp HHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSE--EEEESSCCC
T ss_pred HHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccE--EEEEEecCC
Confidence 887 567889999999999875 5889999999999999999999999887542 3456666 999999999
Q ss_pred HhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecc
Q 039837 316 PDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ 395 (544)
Q Consensus 316 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~ 395 (544)
+++.++|.+ .+++++.||+||++.+++....... ......++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus 307 ~~~~~~~~~---~~~~~~~YG~TE~~~~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~ 380 (563)
T 1amu_A 307 PSLVNKWKE---KVTYINAYGPTETTICATTWVATKE--TIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 380 (563)
T ss_dssp HHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS--CCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEET
T ss_pred HHHHHHHHh---CCeEEEEECcCHHhHhheeeecccc--cCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEech
Confidence 999999987 4789999999999876654321111 223557899999999999999 6899999999999999999
Q ss_pred cccccccCChhhhhcccC------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEE
Q 039837 396 CVMQGYYNNEEETARTID------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469 (544)
Q Consensus 396 ~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 469 (544)
+++.|||++|+.|.+.|. +++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus 381 ~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~V 460 (563)
T 1amu_A 381 GLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAV 460 (563)
T ss_dssp TCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred hhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence 999999999999998873 24699999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837 470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537 (544)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~ 537 (544)
++.++...++.++++++... ..+.++++++++++|+.|++|..++++++||+|++||++|++|++.
T Consensus 461 v~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 461 SVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp EEEECTTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred EEeecCCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCc
Confidence 99998888888999998753 4678899999999999999999999999999999999999999864
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6.3e-79 Score=630.00 Aligned_cols=501 Identities=24% Similarity=0.385 Sum_probs=382.3
Q ss_pred CCCCHHHHHHhhhhhcCCceEEEEc--cCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837 34 ENVTLPDFVLQDAELYADKVAFVEA--VSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA 111 (544)
Q Consensus 34 ~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~ 111 (544)
...|+.+.|.++|+++|+++|+++. ..++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 3468999999999999999999852 12578999999999999999999999999999999999999999999999999
Q ss_pred cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----CCc-EEEecccccccccCHHHHHHhhh---hcCC
Q 039837 112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----GLP-IIVLGEERIESAINWSELIEAAD---KAGN 182 (544)
Q Consensus 112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 182 (544)
|++++|+++.++.+++.+++++++++++|++++....+... ... ++.++.........++++..... ....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPE 175 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCCCCT
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCcccCCC
Confidence 99999999999999999999999999999998876554332 122 33333221112223433322111 0111
Q ss_pred CCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhc--cccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc
Q 039837 183 NFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTL--FSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR 260 (544)
Q Consensus 183 ~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 260 (544)
.....+.+||||||.||||++||+++.+...... ..+ ++...+++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 176 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT--ALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp TSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT--CCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTT
T ss_pred CCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc--cCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCC
Confidence 2233568999999999999999999987766532 333 67889999999999999987 456788999999999874
Q ss_pred -cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837 261 -FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE 339 (544)
Q Consensus 261 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE 339 (544)
+++..+++.++++++|++.++|+++..|++.......++++++. +++||+++++++.++| +.+ ++++++.||+||
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~--i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE 328 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRR--LVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTE 328 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCE--EEECSSCCCHHHHHHH-HHT-TCEEEEEEECGG
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccE--EEECCCCCCHHHHHHH-HHh-CCceeecccccc
Confidence 69999999999999999999999999998754433445677777 9999999999999999 666 899999999999
Q ss_pred ccccccccCCCCCCCC------CCCCCcccccCCCceEEEEeCCCCCcCCC--CCCceEEEecccccccccCChhhhhcc
Q 039837 340 HSCITLTYGDPANPSA------GSKKNSVGFILPNLEVKFINPETGKSLPS--NTPGELCVRSQCVMQGYYNNEEETART 411 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~ 411 (544)
++.+++.......... ....+++|+|+++++++|+| +++++++. ++.|||+|+||+++.|||++|+.|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~ 407 (541)
T 1v25_A 329 TSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 407 (541)
T ss_dssp GSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTT
T ss_pred cccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhh
Confidence 9877665431100000 01346899999999999999 57888884 368999999999999999999999999
Q ss_pred cCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC
Q 039837 412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491 (544)
Q Consensus 412 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 491 (544)
|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.+++++++. +.
T Consensus 408 f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~ 486 (541)
T 1v25_A 408 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GE 486 (541)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred ccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CC
Confidence 98799999999999999999999999999999999999999999999999999999999999988889999998876 44
Q ss_pred CCCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhhh
Q 039837 492 KESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKMR 543 (544)
Q Consensus 492 ~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~~ 543 (544)
..+.+++.+++++ +|+.|++|..++++++||+|++||++|++|+++|.++++
T Consensus 487 ~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 487 KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp --------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred CCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 4567889999999 899999999999999999999999999999999987765
No 15
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3e-79 Score=632.88 Aligned_cols=494 Identities=21% Similarity=0.307 Sum_probs=331.4
Q ss_pred CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837 33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112 (544)
Q Consensus 33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G 112 (544)
..+.|+.++|.++|+++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 104 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG 104 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 34578999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCHHHHHHHHHhcCceEEEeccchH--------HHhhcC--CCcEE-EecccccccccCHHHHHHhhhh--
Q 039837 113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIY--------EKVKGL--GLPII-VLGEERIESAINWSELIEAADK-- 179 (544)
Q Consensus 113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 179 (544)
++++|+++.++.+++.+++++++++++|++.... ..+... ....+ ..+... ....+.+.......
T Consensus 105 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 182 (544)
T 3o83_A 105 VVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA--TDFGLLDWIETPAETF 182 (544)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT--TSEEHHHHHHSCCSSC
T ss_pred cEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc--cccchhhhhhcccccc
Confidence 9999999999999999999999999999987542 222211 12222 222111 11123333222111
Q ss_pred -----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccc
Q 039837 180 -----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKG 253 (544)
Q Consensus 180 -----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~ 253 (544)
......+.+.+||||||.||||++||+++.+.+......+ ++.+++++++.+|++|.+++.. .++.++..|+
T Consensus 183 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~ 260 (544)
T 3o83_A 183 VDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260 (544)
T ss_dssp CCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTC
T ss_pred cccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh--CCCCCCeEEEecCcceEeecchHHHHHHHHcCC
Confidence 1112234567899999999999999999999998888777 7889999999999999998854 5788999999
Q ss_pred eEEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEe
Q 039837 254 KVVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQE 333 (544)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~ 333 (544)
++++.+.+++..+++.++++++|++.++|+++..|++.......++++++. +++||+++++++.+++.+.+ ++++++
T Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--i~~gG~~l~~~~~~~~~~~~-~~~~~~ 337 (544)
T 3o83_A 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKL--LQVGGASFPESLARQVPEVL-NCKLQQ 337 (544)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCE--EEEESSCCCHHHHTHHHHHH-CSEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceE--EEEcCCCCCHHHHHHHHHHh-CCcEEe
Confidence 999999999999999999999999999999999998876655666778777 99999999999999999998 899999
Q ss_pred cccCccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc
Q 039837 334 AYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI 412 (544)
Q Consensus 334 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 412 (544)
.||+||++..+.... ........++|+|+ ++++++|+| +++++++.|+.|||+|+|++++.|||++|+.|...|
T Consensus 338 ~YG~TE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 412 (544)
T 3o83_A 338 VFGMAEGLVNYTRLD----DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVF 412 (544)
T ss_dssp EEECTTSCEEECCTT----SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHB
T ss_pred eeccccccceeecCC----CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhC
Confidence 999999875443321 11122346789996 899999999 789999999999999999999999999999999999
Q ss_pred CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC
Q 039837 413 DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK 492 (544)
Q Consensus 413 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 492 (544)
+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.++++++..+ ..
T Consensus 413 ~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~ 491 (544)
T 3o83_A 413 DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PE 491 (544)
T ss_dssp CTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------------
T ss_pred CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CC
Confidence 88999999999999999999999999999999999999999999999999999999999999888999999998765 45
Q ss_pred CCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 493 ESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 493 ~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
.+.+++++++++ .|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus 492 ~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 492 LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------
T ss_pred CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 567889999988 7999999999999999999999999999999998653
No 16
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.7e-76 Score=614.38 Aligned_cols=519 Identities=23% Similarity=0.334 Sum_probs=420.4
Q ss_pred eeeccccccCCcceeeecCCCCCCCCCCCC-HHHHHHhhhhh-----cCCceEEEEcc---CCceeeHHHHHHHHHHHHH
Q 039837 8 SVPVPLAAAHDEEHIFRSRHPAVPVPENVT-LPDFVLQDAEL-----YADKVAFVEAV---SGKAYTYAQVARDTRGFAK 78 (544)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~a~~-----~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~ 78 (544)
++-++|..+....+.+.........+...+ +.++|.++|+. +|+++|+++.. .++++||+||.++++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~ 88 (570)
T 3c5e_A 9 SSGVDLGTENLYFQSMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAAN 88 (570)
T ss_dssp ------------------CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHH
T ss_pred ccccccCcceeeeeecccccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHH
Confidence 445556555555555443333334444444 56889999998 99999998732 1378999999999999999
Q ss_pred HHHHc-CCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----
Q 039837 79 ALRSL-GLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----- 152 (544)
Q Consensus 79 ~L~~~-Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----- 152 (544)
+|++. |+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+...
T Consensus 89 ~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~ 168 (570)
T 3c5e_A 89 VLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP 168 (570)
T ss_dssp HHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT
T ss_pred HHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC
Confidence 99998 999999999999999999999999999999999999999999999999999999999998776655331
Q ss_pred CCc-EEEecccccccccCHHHHHHhhhhc------CCCCCCCCCCCCCCCcCcceeeccHHHHHH-HHHhhccccCCccc
Q 039837 153 GLP-IIVLGEERIESAINWSELIEAADKA------GNNFSNDDDVKQTDLWISKGVMLTHRNLVA-NLCSTLFSVVPEMI 224 (544)
Q Consensus 153 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~tsgttG~PKgV~~t~~~l~~-~~~~~~~~~~~~~~ 224 (544)
.+. ++.++.........+.++....... .......+.+||||||.||||++||+.+.+ ..... ..+ ++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~--~~~ 245 (570)
T 3c5e_A 169 SLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWT--GLQ 245 (570)
T ss_dssp TCCEEEEESSSCCTTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTT--SCC
T ss_pred ceeEEEEecccCccccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhc--CCC
Confidence 122 3334322222233455554432111 112233567899999999999999994432 33333 444 778
Q ss_pred CccEEEEecchhHHHHHHHHHHhhHhccceEEEcC--ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCcccc
Q 039837 225 GQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN--RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKL 302 (544)
Q Consensus 225 ~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l 302 (544)
.+++++..+|++|.+++...++.++..|+++++.+ .+++..+++.++++++|++.++|+++..|++.. ....+++++
T Consensus 246 ~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~l 324 (570)
T 3c5e_A 246 ASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHL 324 (570)
T ss_dssp TTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTC
T ss_pred CCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccc
Confidence 89999999999999998667889999999999876 679999999999999999999999999998863 234456777
Q ss_pred ccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcC
Q 039837 303 QLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSL 382 (544)
Q Consensus 303 ~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 382 (544)
+. +++||+++++++.++|.+.+ ++++++.||+||++..++... ......+++|+|+++++++|+| ++++++
T Consensus 325 r~--i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~~v~i~d-~~g~~~ 395 (570)
T 3c5e_A 325 QN--CVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-----TMKIKPGYMGTAASCYDVQIID-DKGNVL 395 (570)
T ss_dssp CE--EEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-----TSCCCTTCCCEECTTCCEEEEC-TTSCBC
T ss_pred eE--EEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-----ccccCCCcccccCCCceEEEEC-CCCCCC
Confidence 77 99999999999999999988 899999999999986654432 1234567899999999999999 679999
Q ss_pred CCCCCceEEEe-----cccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHH
Q 039837 383 PSNTPGELCVR-----SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI 457 (544)
Q Consensus 383 ~~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~ 457 (544)
+.|+.|||+|+ |++++.|||++|+.|.+.| .++||+|||+|++++||++++.||.||+||++|++|+|.+||++
T Consensus 396 ~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~ 474 (570)
T 3c5e_A 396 PPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENA 474 (570)
T ss_dssp CTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHH
T ss_pred CCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHH
Confidence 99999999999 9999999999999999988 57999999999999999999999999999999999999999999
Q ss_pred HhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC--C---CHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchH
Q 039837 458 LLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK--E---SEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRR 532 (544)
Q Consensus 458 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~---~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~ 532 (544)
|.++|+|.+++|++.+++..++.+++++++.++.. . ..++|+++++++|+.|++|..++++++||+|++||++|+
T Consensus 475 l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~ 554 (570)
T 3c5e_A 475 LMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRA 554 (570)
T ss_dssp HHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHH
T ss_pred HHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHH
Confidence 99999999999999998888889999999876531 1 246889999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 039837 533 ILKDKMLE 540 (544)
Q Consensus 533 ~l~~~~~~ 540 (544)
+|++++.+
T Consensus 555 ~L~~~~~~ 562 (570)
T 3c5e_A 555 KLRDKEWK 562 (570)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99998743
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.3e-78 Score=624.03 Aligned_cols=487 Identities=25% Similarity=0.391 Sum_probs=317.1
Q ss_pred CCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837 34 ENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113 (544)
Q Consensus 34 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 113 (544)
.++|+.+.|.++|+++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 4679999999999999999999986 78999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhc----C-CCc-EEEecccccccccCHHHHHHh----hhhcCCC
Q 039837 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKG----L-GLP-IIVLGEERIESAINWSELIEA----ADKAGNN 183 (544)
Q Consensus 114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~-~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 183 (544)
+++|+++.++.+++.+++++++++++|++.+....+.. . ... .+.++.. ......+...... .......
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 160 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDG-SGPFAPFKDLASDTPFSAPEFGAA 160 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCC-CSSCEEGGGTCCCSCCCCCCCCTT
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCC-CcChhhHhhccCCCCCCcCCCCcc
Confidence 99999999999999999999999999999886555221 1 122 2222211 0000000000000 0011122
Q ss_pred CCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCH
Q 039837 184 FSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFEL 263 (544)
Q Consensus 184 ~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~ 263 (544)
....+.+||||||.||||++||+++.+.+.+....+ ++.++++++..+|++|.+|+...+...+..|++++ ...+++
T Consensus 161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~-~~~~~~ 237 (509)
T 3ivr_A 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI-AAKFDP 237 (509)
T ss_dssp SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE-CSSCCH
T ss_pred ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh--CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE-ecccCH
Confidence 233578999999999999999999999998888777 78899999999999999998555444555555544 457899
Q ss_pred HHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccc
Q 039837 264 RAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCI 343 (544)
Q Consensus 264 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 343 (544)
..+++.++++++|++.++|+++..|++.. ....+++++. ++.+|++ ++.+++.+.+|++++++.||+||++.+
T Consensus 238 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~--~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 238 AQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRA--VTGLDTP---ETIERFEATCPNATFWATFGQSETSGL 310 (509)
T ss_dssp HHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCE--EEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred HHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhhe--ecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence 99999999999999999999999998866 3455677777 9999987 888999999999999999999999977
Q ss_pred ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCce
Q 039837 344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423 (544)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~ 423 (544)
++... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.|||++|+.|...| .+|||+|||+
T Consensus 311 ~~~~~------~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl 382 (509)
T 3ivr_A 311 STFAP------YRDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDM 382 (509)
T ss_dssp EEEEE------GGGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEE
T ss_pred cccCc------cccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccE
Confidence 66543 112234599999999999999 579999999999999999999999999999999999 5899999999
Q ss_pred EEEcCCCcEEEEeec--CCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 039837 424 GYIDDDGDIFIVDRI--KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDF 501 (544)
Q Consensus 424 ~~~~~~g~~~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 501 (544)
|++++||++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.++++++
T Consensus 383 ~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~ 462 (509)
T 3ivr_A 383 GRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEF 462 (509)
T ss_dssp EEECTTSCEEEEEEC-----------------------------------------------------------------
T ss_pred EEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHH
Confidence 999999999999999 899999999999999999999999999999999999888899999999888777788999999
Q ss_pred HHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 502 VASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 502 l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
++++|+.|++|..++++++||+|++||++|++|++++++.
T Consensus 463 l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 463 VASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------
T ss_pred HHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998754
No 18
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1e-76 Score=625.28 Aligned_cols=498 Identities=21% Similarity=0.279 Sum_probs=419.4
Q ss_pred CHHHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837 37 TLPDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112 (544)
Q Consensus 37 ~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G 112 (544)
++.+.|+++++++|+++|+++.. .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 46778889999999999999731 24789999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH------------H-hhcC---CC-cEEEecccc------cccccC
Q 039837 113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE------------K-VKGL---GL-PIIVLGEER------IESAIN 169 (544)
Q Consensus 113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------------~-~~~~---~~-~~~~~~~~~------~~~~~~ 169 (544)
++++|+++.++.+++.+++++++++++|+++.... . +... .+ .++.++... ......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 99999999999999999999999999999865321 1 1111 12 234443211 011233
Q ss_pred HHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHH-hhccccCCcccCccEEEEecchhHHHHHH
Q 039837 170 WSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLC-STLFSVVPEMIGQVTTLGLIPFFHIYGIT 242 (544)
Q Consensus 170 ~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 242 (544)
|.++...... ........+.+||||||.||||++||++++..+. .....+ ++.++|++++.+|++|.+|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~g~~ 314 (652)
T 1pg4_A 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF--DYHPGDIYWCTADVGWVTGHS 314 (652)
T ss_dssp HHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHH
T ss_pred HHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc--CCCCCCEEEEccCCeeeechH
Confidence 5555432111 0122334678999999999999999999877653 333344 678899999999999999987
Q ss_pred HHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCH
Q 039837 243 GICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAP 316 (544)
Q Consensus 243 ~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~ 316 (544)
..++.++..|+++++.+. .++..+++.++++++|+++++|+++..|++... ....+++++|. +++|||++++
T Consensus 315 ~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~--i~~gGe~l~~ 392 (652)
T 1pg4_A 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI--LGSVGEPINP 392 (652)
T ss_dssp HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCE--EEEESSCCCH
T ss_pred HHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEE--EEEecCCCCH
Confidence 778899999999999874 578999999999999999999999999988654 23456788777 9999999999
Q ss_pred hHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEec
Q 039837 317 DLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRS 394 (544)
Q Consensus 317 ~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~ 394 (544)
++++++.+.++ ++++++.||+||++..++..... ......+++|+|++|++++|+| ++|++++.|+.|||+|+|
T Consensus 393 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~---~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g 468 (652)
T 1pg4_A 393 EAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---AIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD 468 (652)
T ss_dssp HHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---TCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred HHHHHHHHHhCCCCCcEEccccCcccccceecCCCC---CcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence 99999999883 28999999999998766543210 1234668999999999999999 689999999999999999
Q ss_pred --ccccccccCChhhhhcccC--CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEE
Q 039837 395 --QCVMQGYYNNEEETARTID--KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV 470 (544)
Q Consensus 395 --~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 470 (544)
|+++.|||++++.+...+. .+|||+|||+|++++||++++.||.||+||++|++|++.+||++|.+||+|.+++|+
T Consensus 469 ~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 548 (652)
T 1pg4_A 469 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548 (652)
T ss_dssp CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEE
T ss_pred CCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 7899999999998876652 478999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837 471 SLPDEEAGEIPAACVVMNPNAKES---EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542 (544)
Q Consensus 471 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~ 542 (544)
+.+++..|+.+++++++.++...+ .++|+++++++|+.|++|..++++++||+|++|||+|++|++++.+++
T Consensus 549 g~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp EEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred EEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 999888889999999998765554 478999999999999999999999999999999999999999997653
No 19
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.8e-77 Score=615.43 Aligned_cols=488 Identities=20% Similarity=0.252 Sum_probs=407.2
Q ss_pred CCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCe
Q 039837 35 NVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGV 114 (544)
Q Consensus 35 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 114 (544)
..|+.+.|.++|+++|+++|+.+. ++++||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 80 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHA 80 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 468999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHh---hhh------cCCCCC
Q 039837 115 FSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEA---ADK------AGNNFS 185 (544)
Q Consensus 115 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~ 185 (544)
++|+++.++.+++.++++.++++++|++++....+.. ...+. +..+... ... ......
T Consensus 81 ~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~d~ 147 (521)
T 3l8c_A 81 YIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--ISLVS-----------LSEIESAKLAEMPYERTHSVKGDDN 147 (521)
T ss_dssp EEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--SEEEE-----------HHHHHHHHHHTCCCCCSSCCCTTSE
T ss_pred EEecCccccHHHHHHHHHhCCCCEEEecCcccccccc--Ccccc-----------hhhhhhcccccCCcccCCCCCCCCc
Confidence 9999999999999999999999999998765332211 11111 1111111 000 112223
Q ss_pred CCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCcc---C
Q 039837 186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRF---E 262 (544)
Q Consensus 186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---~ 262 (544)
..+.+||||||.||||++||+++.+.+.+............++++...|++|..++ ..++.++..|+++++.+.. +
T Consensus 148 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~ 226 (521)
T 3l8c_A 148 YYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVAD 226 (521)
T ss_dssp EEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTC
T ss_pred EEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhC
Confidence 45789999999999999999999988877765533377889999999999998887 5678899999999998764 8
Q ss_pred HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccc
Q 039837 263 LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSC 342 (544)
Q Consensus 263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~ 342 (544)
+..+++.+.++++|++.++|+++..+..........+++++. +++||+++++++.+++.+.|+++++++.||+||++.
T Consensus 227 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 304 (521)
T 3l8c_A 227 FKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTH--FYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV 304 (521)
T ss_dssp HHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCE--EEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceE--EEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence 899999999999999999999999998877666667788777 999999999999999999999999999999999987
Q ss_pred cccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhccc---CCCCeee
Q 039837 343 ITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTI---DKNGWLH 419 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~ 419 (544)
.++...............++|+|+++++++|+| ++|.+++.|+.|||+|+||+++.|||++|+.|.+.| ++++||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~ 383 (521)
T 3l8c_A 305 ALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYH 383 (521)
T ss_dssp CSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred hhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeee
Confidence 665432110000123456899999999999999 689999999999999999999999999999999887 5678999
Q ss_pred cCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCC-CCceeEEEEEeCCCCCCC----
Q 039837 420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEE-AGEIPAACVVMNPNAKES---- 494 (544)
Q Consensus 420 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~---- 494 (544)
|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++..++. .++.+++++++.++....
T Consensus 384 TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~ 463 (521)
T 3l8c_A 384 TGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRE 463 (521)
T ss_dssp EEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSH
T ss_pred CCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccc
Confidence 999999999999999999999999999999999999999999999999999887554 457889999988764321
Q ss_pred ---HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 495 ---EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 495 ---~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
.++++++++++|+.|++|..++++++||+|++||++|++|+++++++
T Consensus 464 ~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 464 LELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp HHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred hhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 46789999999999999999999999999999999999999998665
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.6e-78 Score=625.90 Aligned_cols=486 Identities=21% Similarity=0.252 Sum_probs=319.9
Q ss_pred CCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc
Q 039837 33 PENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG 112 (544)
Q Consensus 33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G 112 (544)
+...++.++|.++|+++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 149 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAG 149 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHC
Confidence 45679999999999999999999986 7899999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCC
Q 039837 113 GVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQ 192 (544)
Q Consensus 113 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ts 192 (544)
++++|+++.++.+++.+++++++++++|++.+....+... ..+.+.+........ ............+.+.+||
T Consensus 150 ~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TS 223 (570)
T 4gr5_A 150 GGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT--TTLYVEDEAASDAPA----GNLATGVGPEDVACVMFTS 223 (570)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS--EEEECCC-------C----CCCCCCCCTTSEEEEECCS
T ss_pred CEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC--cceeeeccccccccc----cccCCCCCCCCeEEEEECC
Confidence 9999999999999999999999999999987764443221 112111110000000 0000011223334678999
Q ss_pred CCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC--ccCHHHHHHHH
Q 039837 193 TDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN--RFELRAFLDAL 270 (544)
Q Consensus 193 gttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i 270 (544)
||||.||||++||+++.+.+.. ...+ ++.++++++..+|++|..+. ..++.++..|+++++.+ .+++..+++.+
T Consensus 224 GTTG~PKgV~~th~~l~~~~~~-~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i 299 (570)
T 4gr5_A 224 GSTGRPKGVMSPHRALTGTYLG-QDYA--GFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELV 299 (570)
T ss_dssp SCCSSCCCEEEEHHHHHHHHSS-CCSS--CCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHH
T ss_pred cCCCCCeEEEEecHHHHHHHHh-hhhc--CCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHH
Confidence 9999999999999999877655 2333 67889999999999887665 56788999999999986 46899999999
Q ss_pred HHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCC
Q 039837 271 ITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDP 350 (544)
Q Consensus 271 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~ 350 (544)
+++++|++.++|+++..|++... ..++++|. +++||+++++++.+++.+.++++++++.||+||++.+++.....
T Consensus 300 ~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~--~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~ 374 (570)
T 4gr5_A 300 ARHGVTMLQLSASLFNFLVDEVP---EAFEGVRY--AITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVV 374 (570)
T ss_dssp HHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSE--EEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECC
T ss_pred HHcCCcEEEecHHHHHHHHhhch---hhCCCceE--EEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeec
Confidence 99999999999999999987542 34677777 99999999999999999999899999999999998766543211
Q ss_pred CCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCC--------CCeeecCc
Q 039837 351 ANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDK--------NGWLHTGD 422 (544)
Q Consensus 351 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~~~~~TGD 422 (544)
... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.|||++|+.|.+.|.. ++||+|||
T Consensus 375 ~~~-~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 375 AGD-LSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp GGG-TTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred ccc-cCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 111 234456799999999999999 68999999999999999999999999999999988743 37999999
Q ss_pred eEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCC-CCCCHHHHHHH
Q 039837 423 IGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPN-AKESEDDIMDF 501 (544)
Q Consensus 423 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~ 501 (544)
+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++..+. ...+.++|+++
T Consensus 453 lg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~ 532 (570)
T 4gr5_A 453 LARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRH 532 (570)
T ss_dssp EEEECTTSCEEEEEC-----------------------------------------------------------------
T ss_pred eEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888889999887654 34577899999
Q ss_pred HHhcccCCCceeEEEEeecCCCCCCcccchHHHHHH
Q 039837 502 VASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDK 537 (544)
Q Consensus 502 l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~ 537 (544)
++++|+.|++|..++++++||+|++|||+|++|++.
T Consensus 533 l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 533 VAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ------------------------------------
T ss_pred HHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 999999999999999999999999999999999874
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.2e-75 Score=605.16 Aligned_cols=484 Identities=23% Similarity=0.321 Sum_probs=401.8
Q ss_pred CHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeee
Q 039837 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFS 116 (544)
Q Consensus 37 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 116 (544)
++.++|.++++ +|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 48899999999 9999999986 68999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC-----C--CcEEEeccccc--ccccCHHHHHHhhhh------cC
Q 039837 117 GANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL-----G--LPIIVLGEERI--ESAINWSELIEAADK------AG 181 (544)
Q Consensus 117 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~--~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~ 181 (544)
|+++.++.+++.+++++++++++|++.+....+... . ..++..+.... .....++++...... ..
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATG 181 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCC
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCC
Confidence 999999999999999999999999998766544322 1 22233232111 012245555442111 11
Q ss_pred CCCCCCCCCCCCCCcCcceeeccHHHH-HHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEc-C
Q 039837 182 NNFSNDDDVKQTDLWISKGVMLTHRNL-VANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMM-N 259 (544)
Q Consensus 182 ~~~~~~~~~tsgttG~PKgV~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~ 259 (544)
......+.+||||||.||||++||+++ .+........+ ++.++++++..+|++|.+|+...++.++..|+++++. +
T Consensus 182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 259 (529)
T 2v7b_A 182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL--GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259 (529)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC--CCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS
T ss_pred CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc--CCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC
Confidence 122335678999999999999999999 66666555555 7788999999999999999877778899999999987 5
Q ss_pred ccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837 260 RFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE 339 (544)
Q Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE 339 (544)
.+++..+++.++++++|++.++|+++..|++..........+++. +++||+++++++.++|.+.+ ++++++.||+||
T Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~--~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE 336 (529)
T 2v7b_A 260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRI--CTSAGEALPREIGERFTAHF-GCEILDGIGSTE 336 (529)
T ss_dssp CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCE--EEECSSCCCHHHHHHHHHHH-SCCEEEEEECTT
T ss_pred CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEE--EEEcCCCCCHHHHHHHHHHh-CCceeeeEchhh
Confidence 679999999999999999999999999998865433321224555 99999999999999999988 899999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeee
Q 039837 340 HSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLH 419 (544)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 419 (544)
++.+++... . .....+++|+|+++++++|+| ++|++++.|+.|||+|+|++++.|||++++.|...| .++||+
T Consensus 337 ~~~~~~~~~----~-~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~ 409 (529)
T 2v7b_A 337 MLHIFLSNR----A-GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIR 409 (529)
T ss_dssp TSSEEEECC----T-TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEE
T ss_pred cCceeeccc----c-CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcc
Confidence 976655432 1 224567899999999999999 689999999999999999999999999999999988 589999
Q ss_pred cCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC---CHH
Q 039837 420 TGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE---SED 496 (544)
Q Consensus 420 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~ 496 (544)
|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.+++++++.++... ..+
T Consensus 410 TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~ 488 (529)
T 2v7b_A 410 SGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAE 488 (529)
T ss_dssp EEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHH
T ss_pred cCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999998 56667788999998765432 236
Q ss_pred HHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837 497 DIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536 (544)
Q Consensus 497 ~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~ 536 (544)
+++++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 489 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 489 ELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp HHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred HHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 7999999999999999999999999999999999999986
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.6e-76 Score=618.63 Aligned_cols=492 Identities=23% Similarity=0.337 Sum_probs=421.0
Q ss_pred CCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837 32 VPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAA 111 (544)
Q Consensus 32 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~ 111 (544)
.....|+.++|.++|+ ||++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 3456899999999998 999999987 789999999999999999999999999999999999999999999999999
Q ss_pred cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchH--------HHhh-c-CCCcEEEecccccccccCHHHHHHhhhh--
Q 039837 112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIY--------EKVK-G-LGLPIIVLGEERIESAINWSELIEAADK-- 179 (544)
Q Consensus 112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 179 (544)
|+++||+++.++.+++.++++++++++++++.... ..+. . .....+...... ....+.........
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 176 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS--GEHNLQDAINHPAEDF 176 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC--STTBHHHHHHSCCSSC
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc--cccchhhhhccccccc
Confidence 99999999999999999999999999999987643 1111 1 123333322111 11223333222111
Q ss_pred ----cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHH-HHHhhHhccce
Q 039837 180 ----AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITG-ICCATLRNKGK 254 (544)
Q Consensus 180 ----~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~ 254 (544)
......+++.+||||||.||||++||+++.+.+.+....+ ++..++++++.+|++|.+++.. .++.++..|++
T Consensus 177 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~ 254 (617)
T 3rg2_A 177 TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC--QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT 254 (617)
T ss_dssp CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH--TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc--CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence 1112234578899999999999999999999998888777 7889999999999999988754 57889999999
Q ss_pred EEEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCC--CccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEE
Q 039837 255 VVMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIV--DEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ 332 (544)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~ 332 (544)
+++.+..++..+++.++++++|++.++|+++..|++.... ....+++++. +++|||++++++.++|.+.+ +++++
T Consensus 255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~--i~~gGe~l~~~~~~~~~~~~-~~~~~ 331 (617)
T 3rg2_A 255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKL--LQVGGARLSATLAARIPAEI-GCQLQ 331 (617)
T ss_dssp EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCE--EEEESSCCCHHHHHHHHHHT-CSEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccE--EEEcCCcCCHHHHHHHHHHh-CCcEE
Confidence 9999888999999999999999999999999998764332 2235677777 99999999999999999998 89999
Q ss_pred ecccCccccccccccCCCCCCCCCCCCCcccccC-CCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcc
Q 039837 333 EAYGLTEHSCITLTYGDPANPSAGSKKNSVGFIL-PNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETART 411 (544)
Q Consensus 333 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~ 411 (544)
|.||+||++..+.... ........++|.|+ ++++++|+| +++++++.|+.|||+|+|+++++||+++|+.|...
T Consensus 332 ~~YG~tE~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~ 406 (617)
T 3rg2_A 332 QVFGMAEGLVNYTRLD----DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASA 406 (617)
T ss_dssp EEEEETTEEEEECCTT----SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHH
T ss_pred EEeccCcceeecccCC----CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhc
Confidence 9999999886544321 11112235789997 788999999 78999999999999999999999999999999999
Q ss_pred cCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCC
Q 039837 412 IDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNA 491 (544)
Q Consensus 412 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 491 (544)
|..++||+|||+|++++||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+
T Consensus 407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-- 484 (617)
T 3rg2_A 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE-- 484 (617)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence 999999999999999999999999999999999999999999999999999999999999998888889999998865
Q ss_pred CCCHHHHHHHHHh-cccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 492 KESEDDIMDFVAS-NVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 492 ~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
..+.+++.+++++ .|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus 485 ~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 485 PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 4678899999998 6999999999999999999999999999999988654
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=8.7e-77 Score=620.37 Aligned_cols=484 Identities=16% Similarity=0.141 Sum_probs=397.0
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837 29 AVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI 108 (544)
Q Consensus 29 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~ 108 (544)
..+.....|+.++|.++|+++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 20 ~~~~~~~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lai 97 (620)
T 4dg8_A 20 LLDLYAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAI 97 (620)
T ss_dssp TTSGGGSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 344456779999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred HHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCC
Q 039837 109 MAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDD 188 (544)
Q Consensus 109 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (544)
+++|++++|+++.++.+++.++++++++++++++........ ......+....... ... ..........+++
T Consensus 98 lkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~~~~~~~~-~~~-----~~~~~~~~d~a~i 169 (620)
T 4dg8_A 98 LLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPVRHLPAAP-ASV-----ARPCFAADQIAYI 169 (620)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEGGGCCCCC-CCS-----SCCCCCTTSEEEE
T ss_pred HHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeeeccCCcCC-ccc-----cCCCCCCCCeEEE
Confidence 999999999999999999999999999999997654322211 11222211100000 000 0000112333467
Q ss_pred CCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC--ccCHHHH
Q 039837 189 DVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN--RFELRAF 266 (544)
Q Consensus 189 ~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~ 266 (544)
.|||||||.||||+++|+++.+.+.. ...+ ++.++++++..+|++|..++ ..++.++..|+++++.+ .+++..+
T Consensus 170 iyTSGSTG~PKgV~~th~~l~~~~~~-~~~~--~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~ 245 (620)
T 4dg8_A 170 NFSSGTTGRPKAIACTHAGITRLCLG-QSFL--AFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGPLDPGVL 245 (620)
T ss_dssp EEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG--TTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSSCCHHHH
T ss_pred EECCCccccCeEEEEchHHHHHHHHH-HHhh--CCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccccCCHHHH
Confidence 89999999999999999999887765 3334 67899999999999999987 56889999999999964 5789999
Q ss_pred HHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccc
Q 039837 267 LDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLT 346 (544)
Q Consensus 267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~ 346 (544)
.+.++++++|++.++|+++..|++.. ...+++++. +++|||++++++.+++.+.+++++++|.||+||++.+++.
T Consensus 246 ~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~--v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 320 (620)
T 4dg8_A 246 RQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQ--LLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC 320 (620)
T ss_dssp HHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSE--EEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred HHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccE--EEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence 99999999999999999999998642 335677777 9999999999999999988889999999999999876654
Q ss_pred cCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCc-CCCCCCceEEEecccccccccCChhhhhcccCCC-------Cee
Q 039837 347 YGDPANPSAGSKKNSVGFILPNLEVKFINPETGKS-LPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN-------GWL 418 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~-~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------~~~ 418 (544)
....... ......++|+|+++++++|+|+ ++.+ ++.|+.|||+|+|+++++|||++|+.|.+.|..+ +||
T Consensus 321 ~~~~~~~-~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~y 398 (620)
T 4dg8_A 321 HVVTDDD-LEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAY 398 (620)
T ss_dssp EECCTGG-GGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEE
T ss_pred Eeccccc-cCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEE
Confidence 3221111 2345678999999999999995 5555 8899999999999999999999999999988443 799
Q ss_pred ecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 039837 419 HTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDI 498 (544)
Q Consensus 419 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 498 (544)
+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.++...+..+ ++++... +.+
T Consensus 399 rTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv-~~~~~~~------~~~ 471 (620)
T 4dg8_A 399 RTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL-CAWTGKA------DAS 471 (620)
T ss_dssp EEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE-EEEEECT------TCC
T ss_pred eCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE-EEEecCh------HHH
Confidence 999999999999999999999999999999999999999999999999999998877444444 4443321 223
Q ss_pred HHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHH
Q 039837 499 MDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLE 540 (544)
Q Consensus 499 ~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~ 540 (544)
.+.++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 472 ~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 472 PQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp CHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred HHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 456778899999999999999999999999999999987754
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-75 Score=616.31 Aligned_cols=499 Identities=21% Similarity=0.307 Sum_probs=414.6
Q ss_pred CHHHHHHhhhhhcCCceEEEEcc----CCceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCccHHHHHHHHHHh
Q 039837 37 TLPDFVLQDAELYADKVAFVEAV----SGKAYTYAQVARDTRGFAKALR-SLGLRKGQVVIVVLPNVAEYGIVALGIMAA 111 (544)
Q Consensus 37 ~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~ 111 (544)
++.+.|+++++++|+++|+++.. .++++||+||.++++++|+.|+ +.|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 56778889999999999999731 3478999999999999999999 999999999999999999999999999999
Q ss_pred cCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHH---------Hhhc----C-CCc-EEEeccccc-------ccccC
Q 039837 112 GGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYE---------KVKG----L-GLP-IIVLGEERI-------ESAIN 169 (544)
Q Consensus 112 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~----~-~~~-~~~~~~~~~-------~~~~~ 169 (544)
|++++|+++.++.+++.+++++++++++|+++.... .+.+ . .++ +++++.... .....
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 242 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLD 242 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCcccc
Confidence 999999999999999999999999999999876421 1111 1 122 333332110 11233
Q ss_pred HHHHHHhhhh------cCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHh-hccccCCcccCccEEEEecchhHHHHHH
Q 039837 170 WSELIEAADK------AGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCS-TLFSVVPEMIGQVTTLGLIPFFHIYGIT 242 (544)
Q Consensus 170 ~~~~~~~~~~------~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 242 (544)
|.++...... ........+.+||||||.||||++||++++..+.. ....+ ++..+|++++..|++|.+|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~g~~ 320 (663)
T 1ry2_A 243 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF--DTHQEDVFFTAGDIGWITGHT 320 (663)
T ss_dssp HHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS--CCCSSCEEEECSCTTSHHHHH
T ss_pred HHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc--CCCCCcEEEEcCCcHHhhhhH
Confidence 5554432111 11234456789999999999999999998766543 33344 678899999999999999987
Q ss_pred HHHHhhHhccceEEEcCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC--CCccCccccccccEEEecCCCCH
Q 039837 243 GICCATLRNKGKVVMMNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI--VDEFDLSKLQLRAVMTAAAPLAP 316 (544)
Q Consensus 243 ~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~v~~~G~~~~~ 316 (544)
..++.++..|+++++.+. .++..+++.|+++++|+++++|+++..|.+... ....+++++|. +++|||++++
T Consensus 321 ~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~--i~~gGe~l~~ 398 (663)
T 1ry2_A 321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRC--LGSVGEPIAA 398 (663)
T ss_dssp HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCE--EEECSSCCCH
T ss_pred HHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEE--EEEEcCCCCH
Confidence 778899999999999864 478999999999999999999999999988654 23456788777 9999999999
Q ss_pred hHHHHHHhhcC--CCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCC-CCCceEEEe
Q 039837 317 DLLSSFEKKFP--GVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPS-NTPGELCVR 393 (544)
Q Consensus 317 ~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~~Gel~v~ 393 (544)
++++++.+.++ ++++++.||+||++..++..... .......+++|+|++|++++|+|+++|++++. |+.|||+++
T Consensus 399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~ 476 (663)
T 1ry2_A 399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK 476 (663)
T ss_dssp HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--TCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEES
T ss_pred HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC--CCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEe
Confidence 99999999883 38999999999998766543210 01235678999999999999999558999988 999999999
Q ss_pred c--ccccccccCChhhhhcccC--CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEE
Q 039837 394 S--QCVMQGYYNNEEETARTID--KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469 (544)
Q Consensus 394 ~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 469 (544)
| |+++.|||++++.+.+.|. .+|||+|||+|++++||++++.||.||+||++|++|++.+||++|.+||+|.+++|
T Consensus 477 g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~V 556 (663)
T 1ry2_A 477 AAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAV 556 (663)
T ss_dssp SCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEE
T ss_pred cCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEE
Confidence 9 5899999999998887763 37899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHH
Q 039837 470 VSLPDEEAGEIPAACVVMNPNAK---E-S------EDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKML 539 (544)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~ 539 (544)
++.+++..|+.+++++++.++.. . + .++|+++++++|+++++|..|+++++||+|++||++|++|++++.
T Consensus 557 vg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 636 (663)
T 1ry2_A 557 VGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILA 636 (663)
T ss_dssp ECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC
T ss_pred EEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHc
Confidence 99998888899999999877643 2 2 478999999999999999999999999999999999999999876
Q ss_pred Hh
Q 039837 540 EK 541 (544)
Q Consensus 540 ~~ 541 (544)
++
T Consensus 637 ~~ 638 (663)
T 1ry2_A 637 GE 638 (663)
T ss_dssp --
T ss_pred CC
Confidence 54
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.3e-76 Score=604.08 Aligned_cols=475 Identities=24% Similarity=0.322 Sum_probs=388.6
Q ss_pred CCCHHHHHHhhhhhcCC-ceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837 35 NVTLPDFVLQDAELYAD-KVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113 (544)
Q Consensus 35 ~~~l~~~l~~~a~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 113 (544)
.+|+.+.|.++++++|+ ++|+++. ++++||+||.++++++|.+|. .|++|+++++|+++++++++||+++|+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 56889999999999998 9999997 789999999999999998874 489999999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhcCCCCCCCCCCCCC
Q 039837 114 VFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKAGNNFSNDDDVKQT 193 (544)
Q Consensus 114 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsg 193 (544)
+++|+++.++.+++.+++++++++++|++.+.........+..+.++........ ...........+.+|||
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~a~i~~TSG 165 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVP--------EDGADDGDPALVVYTSG 165 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCC--------CCCCCTTSEEEEEEECC
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCC--------CCCCCCCCeEEEEeCCC
Confidence 9999999999999999999999999999865211111111223322211100000 01112233346789999
Q ss_pred CCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHHHHHHHHHc
Q 039837 194 DLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRAFLDALITH 273 (544)
Q Consensus 194 ttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~ 273 (544)
|||.||||++||+++.+.+.+....+ ++.+.++++..+|++|.+|+...++.++..|+++++.+.+++..+++.+ ++
T Consensus 166 TTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~ 242 (505)
T 3nyq_A 166 TTGPPKGAVIPRRALATTLDALADAW--QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-ND 242 (505)
T ss_dssp SSSSCEEEEEEHHHHHHHHHHHHHHH--TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TT
T ss_pred CcCCCCeEEEeHHHHHHHHHHHHHHh--CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hh
Confidence 99999999999999999998888777 7889999999999999999877789999999999999999999999999 88
Q ss_pred CceeeecchHHHHHHhcCCCCC---ccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccccccCCC
Q 039837 274 EVTFAPIVPPIILSLVKDPIVD---EFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDP 350 (544)
Q Consensus 274 ~~t~~~~~P~~~~~l~~~~~~~---~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~ 350 (544)
++|+++++|+++..|++..... ...++++++ +++||+++++++.+++.+.+ +++++|.||+||++..++...
T Consensus 243 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~--i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~-- 317 (505)
T 3nyq_A 243 GATMLFGVPTMYHRIAETLPADPELAKALAGARL--LVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRA-- 317 (505)
T ss_dssp TCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSE--EEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT--
T ss_pred CCeEEEehHHHHHHHHHhhhcCchhhcccccceE--EEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCC--
Confidence 9999999999999998733211 234556666 99999999999999999988 899999999999987665432
Q ss_pred CCCCCCCCCCcccccCCCceEEEEeCCCCCcCCC---CCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEc
Q 039837 351 ANPSAGSKKNSVGFILPNLEVKFINPETGKSLPS---NTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYID 427 (544)
Q Consensus 351 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 427 (544)
......+++|+|+++++++|+| +++.+++. |+.|||+|+|++++.|||++|+.|...|..+|||+|||+|+++
T Consensus 318 ---~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~ 393 (505)
T 3nyq_A 318 ---DGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD 393 (505)
T ss_dssp ---TSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred ---CCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence 1345567899999999999999 57888776 8999999999999999999999999999889999999999999
Q ss_pred CCCcEEEEeec-CCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC-CCCCCHHHHHHHHHhc
Q 039837 428 DDGDIFIVDRI-KELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP-NAKESEDDIMDFVASN 505 (544)
Q Consensus 428 ~~g~~~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~l~~~ 505 (544)
+||++++.||. ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.+ ....+.++++++++++
T Consensus 394 ~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~ 473 (505)
T 3nyq_A 394 PDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR 473 (505)
T ss_dssp TTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHH
T ss_pred CCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhh
Confidence 99999999998 589999999999999999999999999999999999988999999999876 3456789999999999
Q ss_pred ccCCCceeEEEEeecCCCCCCcccchHHHHH
Q 039837 506 VATYKKVRVLHFVDGIPKSHSGKIMRRILKD 536 (544)
Q Consensus 506 l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~ 536 (544)
|+.|++|..++++++||+|++||++|++|++
T Consensus 474 L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 474 LAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999999999999986
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.5e-74 Score=593.12 Aligned_cols=478 Identities=21% Similarity=0.334 Sum_probs=382.8
Q ss_pred CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCee
Q 039837 36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVF 115 (544)
Q Consensus 36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 115 (544)
+||.++|.++|+++|+++|+++. ++++||+||.++++++|++|++. +||+|+++++|+++++++++||+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 57888999999999999999986 78999999999999999999986 89999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcC----CCcEEEec---ccccc--ccc----CHHHHHH-------
Q 039837 116 SGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGL----GLPIIVLG---EERIE--SAI----NWSELIE------- 175 (544)
Q Consensus 116 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~---~~~~~--~~~----~~~~~~~------- 175 (544)
+|+++.++.+++.++++.++++++|++.+........ .+...... ..... ... .......
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNI 155 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHH
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcccc
Confidence 9999999999999999999999999987654332110 00000000 00000 000 0000000
Q ss_pred hhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceE
Q 039837 176 AADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKV 255 (544)
Q Consensus 176 ~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 255 (544)
............+.+||||||.||||++||+++.+.+......+ ++..++++++.+|++|.+|+. .++.++..|+++
T Consensus 156 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~ 232 (501)
T 3ipl_A 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL--GFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFTV 232 (501)
T ss_dssp TCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT--CCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEE
T ss_pred cccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh--CCCccCEEEEeCcHHHHHHHH-HHHHHHHcCceE
Confidence 00011223344678999999999999999999999988887777 788999999999999999984 578899999999
Q ss_pred EEcCccCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecc
Q 039837 256 VMMNRFELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAY 335 (544)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y 335 (544)
++.+.+++..+++.++++++|++.++|+++..|++....... +++. +++||+++++++.+++.+ + ++++++.|
T Consensus 233 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~--i~~gG~~l~~~~~~~~~~-~-~~~~~~~Y 305 (501)
T 3ipl_A 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQK--ILLGGAKLSATMIETALQ-Y-NLPIYNSF 305 (501)
T ss_dssp EECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCE--EEECSSCCCHHHHHHHHH-T-TCCEEEEE
T ss_pred EeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccE--EEEeCCCCCHHHHHHHHH-h-CCCEeccc
Confidence 999999999999999999999999999999999876543322 4455 999999999999999988 4 89999999
Q ss_pred cCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCC
Q 039837 336 GLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKN 415 (544)
Q Consensus 336 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 415 (544)
|+||++..+..... ........++|+|+++++++|+|++ .|+.|||+|+|+.++.|||++++.+.. + .+
T Consensus 306 G~TE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~ 374 (501)
T 3ipl_A 306 GMTETCSQFLTATP---EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-EN 374 (501)
T ss_dssp EEGGGTEEEEEECH---HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ET
T ss_pred cccccccceeecCc---cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cC
Confidence 99999875544321 0012355789999999999999953 467899999999999999999998877 5 68
Q ss_pred CeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 039837 416 GWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE 495 (544)
Q Consensus 416 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 495 (544)
|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++.. ...+.
T Consensus 375 g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~ 452 (501)
T 3ipl_A 375 GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISK 452 (501)
T ss_dssp TEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCH
T ss_pred CceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999988888889988864 45688
Q ss_pred HHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHh
Q 039837 496 DDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEK 541 (544)
Q Consensus 496 ~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~ 541 (544)
++++++++++|+.|++|..++++++||+|++||++|++|++...++
T Consensus 453 ~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 453 AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred HHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 9999999999999999999999999999999999999999987654
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.9e-74 Score=649.00 Aligned_cols=517 Identities=19% Similarity=0.234 Sum_probs=435.1
Q ss_pred CCCCcceeeccccccCCcceee-ecCCCCCCCCCCCCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHH
Q 039837 2 AMPNSFSVPVPLAAAHDEEHIF-RSRHPAVPVPENVTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKAL 80 (544)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L 80 (544)
++|+..+.++++.++++..++. .++.+..+.+ ..++.++|.++++++|+++|+++. ++++||+||.++++++|++|
T Consensus 430 ~~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L 506 (1304)
T 2vsq_A 430 QNPDQPVSTINLVDDREREFLLTGLNPPAQAHE-TKPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRL 506 (1304)
T ss_dssp HSTTSBGGGCCCCCHHHHHHHHTTTSCCCCCCC-CCCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHH
T ss_pred cCccccccccCCCCHHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHH
Confidence 4789999999999988887764 4444444444 379999999999999999999986 78999999999999999999
Q ss_pred HHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCC--CcEEE
Q 039837 81 RSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLG--LPIIV 158 (544)
Q Consensus 81 ~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~ 158 (544)
++.|+++|++|+++++|++++++++|||+++|+++||++|.++.+++.++++++++++++++.+....+.... ...+.
T Consensus 507 ~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 586 (1304)
T 2vsq_A 507 QKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLF 586 (1304)
T ss_dssp HHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEE
T ss_pred HhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999887655433222 12222
Q ss_pred ecccccccccCHHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHH
Q 039837 159 LGEERIESAINWSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHI 238 (544)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 238 (544)
+++........ . ...........+++.|||||||.||||+++|+++.+. .+....+ ++..+++++.+.|++|.
T Consensus 587 ~~~~~~~~~~~-~---~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~--~~~~~d~~l~~~~~~fd 659 (1304)
T 2vsq_A 587 IDDQTRFEEQA-S---DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM--AFSDQDTFLSVSNYAFD 659 (1304)
T ss_dssp SSCGGGGGSCS-S---CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS--CCCTTCEEEECSCTTST
T ss_pred ecccccccccc-C---CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc--CCCCCCEEEEECCccHH
Confidence 22111000000 0 0000111223346789999999999999999999876 4444444 77889999999999998
Q ss_pred HHHHHHHHhhHhccceEEEcCc---cCHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCC
Q 039837 239 YGITGICCATLRNKGKVVMMNR---FELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLA 315 (544)
Q Consensus 239 ~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~ 315 (544)
.+. ..++.++..|+++++.+. .++..+.+.++++++|++.++|+++..|.+.. ...++++|. +++|||+++
T Consensus 660 ~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~--~~~gGe~l~ 733 (1304)
T 2vsq_A 660 AFT-FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRC--ILFGGERAS 733 (1304)
T ss_dssp HHH-HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSE--EEEESSCCC
T ss_pred HHH-HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccE--EEEecCCCC
Confidence 876 678999999999999874 58999999999999999999999999997642 223456666 999999999
Q ss_pred HhHHHHHHhhcCCCeEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecc
Q 039837 316 PDLLSSFEKKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQ 395 (544)
Q Consensus 316 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~ 395 (544)
+++.++|.+.+++++++|.||+||++..++....... .......++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus 734 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~ 811 (1304)
T 2vsq_A 734 VPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL-PDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGM 811 (1304)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC-CSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEET
T ss_pred HHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc-cccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEecc
Confidence 9999999998877899999999999877655432111 1233456899999999999999 6899999999999999999
Q ss_pred cccccccCChhhhhcccC------CCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCCCccceEE
Q 039837 396 CVMQGYYNNEEETARTID------KNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAV 469 (544)
Q Consensus 396 ~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 469 (544)
++++||+++|+.|.+.|. +++||+|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus 812 ~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V 891 (1304)
T 2vsq_A 812 GVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV 891 (1304)
T ss_dssp TCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEE
T ss_pred ccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEE
Confidence 999999999999998883 34699999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHH
Q 039837 470 VSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKM 538 (544)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~ 538 (544)
++.++...+..++++++... ..+.++++++++++||.|++|..++++++||+|+|||++|++|++..
T Consensus 892 ~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 892 VADRHESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp EEECCSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred EEEecCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 99988877889999998654 56788999999999999999999999999999999999999886543
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.2e-73 Score=596.94 Aligned_cols=498 Identities=22% Similarity=0.279 Sum_probs=408.5
Q ss_pred CCCCCHHHHHHhhhhhcCCceEEEEcc--CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHH
Q 039837 33 PENVTLPDFVLQDAELYADKVAFVEAV--SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMA 110 (544)
Q Consensus 33 ~~~~~l~~~l~~~a~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~ 110 (544)
...+|+.++|.++|+++|+++|+++.. .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 356799999999999999999998642 247899999999999999999999999999999999999999999999999
Q ss_pred hcCeeecCCCCCC---HHHHHHHHHhcCceEEEeccchHHHhhcCC-------CcEEEecccccccccCHHHHHHhhhhc
Q 039837 111 AGGVFSGANPTAH---ASELKKQVDAADAKLIVSYAPIYEKVKGLG-------LPIIVLGEERIESAINWSELIEAADKA 180 (544)
Q Consensus 111 ~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (544)
+|++++|+++.++ .+++.++++.+++++++++.+....+.... .....+.......... .. ......
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~ 164 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRS-SS--WQPTSI 164 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGG-GG--CCCCCC
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhcccccc-cc--CCCCCC
Confidence 9999999999884 578999999999999999988776654422 0111111111000000 00 000011
Q ss_pred CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc
Q 039837 181 GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR 260 (544)
Q Consensus 181 ~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 260 (544)
.......+.+||||||.||||++||+++.+.+.+....+ ++..++++++++|++|.+|+...++.++..|+++++.++
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~ 242 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF--HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSP 242 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCH
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh--CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCH
Confidence 222334678999999999999999999999998888777 788999999999999999986668899999999999886
Q ss_pred c----CHHHHHHHHHHcCceeeecchHHHHHHhcCC---CCCccCccccccccEEEecCCCCHhHHHHHHhhcC-----C
Q 039837 261 F----ELRAFLDALITHEVTFAPIVPPIILSLVKDP---IVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFP-----G 328 (544)
Q Consensus 261 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~-----~ 328 (544)
+ ++..+++.++++++|++.++|+++..+++.. .....++++++. +++||+++++++.++|.+.|+ +
T Consensus 243 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~--~~~gg~~l~~~~~~~~~~~~~~~g~~~ 320 (590)
T 3kxw_A 243 FSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVT--AFNGAEPVREETMEHFYQAFKEFGFRK 320 (590)
T ss_dssp HHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCE--EEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred HHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHH--HhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 5 7899999999999999999999999887642 234456778777 999999999999999999873 4
Q ss_pred CeEEecccCccccccccccCCCC----------------------CCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCC
Q 039837 329 VQVQEAYGLTEHSCITLTYGDPA----------------------NPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNT 386 (544)
Q Consensus 329 ~~i~~~yG~tE~~~~~~~~~~~~----------------------~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 386 (544)
+++++.||+||++.+++...... .........++|+|+++ ++|+|++++.+++.|+
T Consensus 321 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~ 398 (590)
T 3kxw_A 321 EAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ 398 (590)
T ss_dssp GGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB
T ss_pred cccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC
Confidence 57999999999998766532110 00122344678999998 8889977799999999
Q ss_pred CceEEEecccccccccCChhhhhcccCC------CC--eeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHH
Q 039837 387 PGELCVRSQCVMQGYYNNEEETARTIDK------NG--WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 458 (544)
Q Consensus 387 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l 458 (544)
.|||+|+||+++.|||++|+.|.+.|.. +| ||+|||+|+++ +|.+++.||.||+||++|++|+|.+||++|
T Consensus 399 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l 477 (590)
T 3kxw_A 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSL 477 (590)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHH
T ss_pred EEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHH
Confidence 9999999999999999999999988853 24 99999999998 999999999999999999999999999999
Q ss_pred -hcCCCcc--ceEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcccC-CCcee-EEEEe--ecCCCCCCccc
Q 039837 459 -LTHPSVE--DAAVVSLPDEEAGEIPAACVVMNPNA--KESEDDIMDFVASNVAT-YKKVR-VLHFV--DGIPKSHSGKI 529 (544)
Q Consensus 459 -~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~l~~~l~~-~~~p~-~~~~~--~~~P~t~~GKi 529 (544)
..+|.|. +++|++++++. ++.+++++++.++. ..+.+++.++++++++. +++|. .++++ ++||+|++|||
T Consensus 478 ~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi 556 (590)
T 3kxw_A 478 MHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKI 556 (590)
T ss_dssp HHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHH
T ss_pred HhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHH
Confidence 7889998 79999888765 67788888887653 34567899999998885 77775 55555 79999999999
Q ss_pred chHHHHHHHHHh
Q 039837 530 MRRILKDKMLEK 541 (544)
Q Consensus 530 ~r~~l~~~~~~~ 541 (544)
+|++|++++.++
T Consensus 557 ~R~~L~~~~~~~ 568 (590)
T 3kxw_A 557 RRNFCRKHLLDK 568 (590)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999999999754
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.9e-74 Score=596.82 Aligned_cols=492 Identities=17% Similarity=0.153 Sum_probs=311.1
Q ss_pred CCCCCCCHHHHHHhhhhhcCCceEEEEccC--------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHH
Q 039837 31 PVPENVTLPDFVLQDAELYADKVAFVEAVS--------GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG 102 (544)
Q Consensus 31 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~ 102 (544)
.....+|+.++|.++|+++|+++|+++... ++++||+||.++++++|++|.+.|+ +||+|+++++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 345678999999999999999999987521 2789999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEeccchHHHhhcCCCcEEEecccccccccCHHHHHHhhhhc--
Q 039837 103 IVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSYAPIYEKVKGLGLPIIVLGEERIESAINWSELIEAADKA-- 180 (544)
Q Consensus 103 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 180 (544)
+++|||+++|++++|+++.++.+++.+++++++++++|++++....+.......+... ....+..........
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 168 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDT-----KNQSFIENLSTQDTSDI 168 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEET-----TCHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecc-----cchhhhhhccccccccc
Confidence 9999999999999999999999999999999999999998765443321111111111 011112222211111
Q ss_pred ----CCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhcccc------CCcccCccEEEEecchhHHHHHHHHHHhhHh
Q 039837 181 ----GNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV------VPEMIGQVTTLGLIPFFHIYGITGICCATLR 250 (544)
Q Consensus 181 ----~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 250 (544)
.......+.+||||||.||||++||+++.+.+......+ ...+...+++++..|++|..++ ..++.++.
T Consensus 169 ~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 247 (562)
T 3ite_A 169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEMFLAWR 247 (562)
T ss_dssp CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHHHHHHH
T ss_pred ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHHHHHHh
Confidence 111124578999999999999999999988776544321 1146778899999999998876 56778999
Q ss_pred ccceEEEcCccC-HHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCC
Q 039837 251 NKGKVVMMNRFE-LRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGV 329 (544)
Q Consensus 251 ~G~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~ 329 (544)
.|+++++.+... +..+.+.++++++|++.++|+++..+... ..++++++. +++||+++++++.++|.+.+ ++
T Consensus 248 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~--~~~gG~~l~~~~~~~~~~~~-~~ 320 (562)
T 3ite_A 248 FGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVY--LGVGGEKMTPRTQQIWSSSD-RV 320 (562)
T ss_dssp TTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCE--EEEESSCCCHHHHHHHTTCS-SC
T ss_pred cccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEE--EEEecCCCCHHHHHHHhhCC-Cc
Confidence 999999987653 56788999999999999999999887543 345677777 99999999999999999876 89
Q ss_pred eEEecccCccccccccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhh
Q 039837 330 QVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETA 409 (544)
Q Consensus 330 ~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 409 (544)
.+++.||+||++..++.... .......++|+|+++++++|+|++++.+++.|+.|||+|+|+.++.|||++|+.+.
T Consensus 321 ~~~~~YG~TE~~~~~~~~~~----~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 321 ALVNVYGPTEVTIGCSAGRI----LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG 396 (562)
T ss_dssp EEEEEECCGGGCSCSEEEEC----CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred EEEEeeccchheeeeeeeee----cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence 99999999999876655431 12345678999999999999998889999999999999999999999999999887
Q ss_pred ccc-CCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcC-CCccceEEEeecCCCCCceeEEEEEe
Q 039837 410 RTI-DKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTH-PSVEDAAVVSLPDEEAGEIPAACVVM 487 (544)
Q Consensus 410 ~~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~ 487 (544)
..+ ++++||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++ +.+.+++|++.+++..++..++.++.
T Consensus 397 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 476 (562)
T 3ite_A 397 FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVA 476 (562)
T ss_dssp EEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------------------------------------------
T ss_pred cccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEe
Confidence 654 2234999999999999999999999999999999999999999999998 77888888888877766665555554
Q ss_pred CCCCCC-------------CHHHHHHHHHhcccCCCceeEEEEeecCCCC-CCcccchHHHHHHHHH
Q 039837 488 NPNAKE-------------SEDDIMDFVASNVATYKKVRVLHFVDGIPKS-HSGKIMRRILKDKMLE 540 (544)
Q Consensus 488 ~~~~~~-------------~~~~l~~~l~~~l~~~~~p~~~~~~~~~P~t-~~GKi~r~~l~~~~~~ 540 (544)
..+... ..++|+++++++|+.|++|..|+++++||+| ++||++|++|++++++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 477 SSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 433222 1348999999999999999999999999998 8999999999999864
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.6e-72 Score=587.70 Aligned_cols=502 Identities=20% Similarity=0.284 Sum_probs=409.0
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCceEEEEcc-CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHH
Q 039837 30 VPVPENVTLPDFVLQDAELYADKVAFVEAV-SGKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGI 108 (544)
Q Consensus 30 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~ 108 (544)
...+...||.++|.++|+++|+.+++.+.. .++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 15 ~~~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 94 (576)
T 3gqw_A 15 MRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFAC 94 (576)
T ss_dssp CCCSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 344567799999999999999988876432 2378999999999999999999999999999999999999999999999
Q ss_pred HHhcCeeecCCCCCC-------HHHHHHHHHhcCceEEEeccchHHHhhcCC---CcEEEecccccccccCHHHHHHhhh
Q 039837 109 MAAGGVFSGANPTAH-------ASELKKQVDAADAKLIVSYAPIYEKVKGLG---LPIIVLGEERIESAINWSELIEAAD 178 (544)
Q Consensus 109 ~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (544)
+++|++++|+++.++ .+++.++++.+++++++++.+....+.... .....+............ ....
T Consensus 95 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 171 (576)
T 3gqw_A 95 QYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEAD---VALQ 171 (576)
T ss_dssp HHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHHHHTSCCCC---CCCC
T ss_pred HHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhhhhcccccc---cccC
Confidence 999999999999998 889999999999999999988766554321 111111100000000000 0000
Q ss_pred hcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccc-cCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEE
Q 039837 179 KAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFS-VVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVM 257 (544)
Q Consensus 179 ~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~ 257 (544)
.........+.+||||||.||||++||+++.+.+...... + ++.++++++.++|++|.+|+...++.++..|+++++
T Consensus 172 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~ 249 (576)
T 3gqw_A 172 RPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI--KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY 249 (576)
T ss_dssp CCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS--CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc--CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEE
Confidence 1112333467899999999999999999999888776543 4 778999999999999999997778889999999998
Q ss_pred cCc----cCHHHHHHHHHHcCceeeecchHHHHHHhcCCC---CCccCccccccccEEEecCCCCHhHHHHHHhhcC---
Q 039837 258 MNR----FELRAFLDALITHEVTFAPIVPPIILSLVKDPI---VDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFP--- 327 (544)
Q Consensus 258 ~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~--- 327 (544)
... +++..+++.++++++|++.++|+++..+.+... ....++++++. +++||+++++++.++|.+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~--~~~gg~~l~~~~~~~~~~~~~~~~ 327 (576)
T 3gqw_A 250 LRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRV--AGIGAEPISAEQLHQFAECFRQVN 327 (576)
T ss_dssp CCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCE--EEECSSCCCHHHHHHHHHHHGGGT
T ss_pred cchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHh--hhccCccCCHHHHHHHHHHHhhcC
Confidence 874 578899999999999999999999988766443 23445777777 999999999999999999875
Q ss_pred --CCeEEecccCccccccccccCCCCCC-----------------------CCCCCCCcccccCCCceEEEEeCCCCCcC
Q 039837 328 --GVQVQEAYGLTEHSCITLTYGDPANP-----------------------SAGSKKNSVGFILPNLEVKFINPETGKSL 382 (544)
Q Consensus 328 --~~~i~~~yG~tE~~~~~~~~~~~~~~-----------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 382 (544)
++.+++.||+||++.+++........ .......++|+|+++++++|+| ++|+++
T Consensus 328 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~ 406 (576)
T 3gqw_A 328 FDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPV 406 (576)
T ss_dssp CCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBC
T ss_pred CCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCC
Confidence 78899999999999877654311100 0001123789999999999999 799999
Q ss_pred CCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCCCcEEEEeecCCceeecceeeChHHHHHHHhcCC
Q 039837 383 PSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHP 462 (544)
Q Consensus 383 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 462 (544)
+.|+.|||+|+|+.++.|||++++.+...+ .+|||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.+||
T Consensus 407 ~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p 484 (576)
T 3gqw_A 407 AERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEP 484 (576)
T ss_dssp CTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSS
T ss_pred CCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCc
Confidence 999999999999999999999999887765 7899999999999 79999999999999999999999999999999999
Q ss_pred CccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcc-cCCCceeEEEEee--cCCCCCCcccchHHHHHHHH
Q 039837 463 SVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNV-ATYKKVRVLHFVD--GIPKSHSGKIMRRILKDKML 539 (544)
Q Consensus 463 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~~~~~~--~~P~t~~GKi~r~~l~~~~~ 539 (544)
+|.+++|++..+.. +...++++.........+++.+.+++++ +.+++|..+.+++ +||+|++||++|++|+++|+
T Consensus 485 ~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~ 562 (576)
T 3gqw_A 485 EIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQ 562 (576)
T ss_dssp SCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHH
T ss_pred ccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHH
Confidence 99998888876653 3445555554444445578888999888 6899999888887 89999999999999999998
Q ss_pred Hhhh
Q 039837 540 EKMR 543 (544)
Q Consensus 540 ~~~~ 543 (544)
++++
T Consensus 563 ~~~~ 566 (576)
T 3gqw_A 563 KAYA 566 (576)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8764
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.2e-59 Score=475.98 Aligned_cols=397 Identities=19% Similarity=0.280 Sum_probs=314.1
Q ss_pred CCCCCCCCCCHHHHHHhhhhhcCCceEEEEcc-----CC--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc
Q 039837 28 PAVPVPENVTLPDFVLQDAELYADKVAFVEAV-----SG--KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE 100 (544)
Q Consensus 28 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~ 100 (544)
++......+||.++|.++|+++|+++|+++.. ++ +++||+||.++++++|++|++.|+ +||+|+++++|+++
T Consensus 16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e 94 (480)
T 3t5a_A 16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE 94 (480)
T ss_dssp --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence 33444457899999999999999999998753 12 789999999999999999999996 99999999999999
Q ss_pred HHHHHHHHHHhcCeeecCCC---CCCHHHHHHHHHhcCceEEEeccchHHHhhcCCC--------cEEEecccccccccC
Q 039837 101 YGIVALGIMAAGGVFSGANP---TAHASELKKQVDAADAKLIVSYAPIYEKVKGLGL--------PIIVLGEERIESAIN 169 (544)
Q Consensus 101 ~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 169 (544)
+++++|||+++|+++||+++ .++.+++.++++.++++++|++.+....+..... .++.++.......
T Consensus 95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 172 (480)
T 3t5a_A 95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAP-- 172 (480)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSCTTCC--
T ss_pred HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccccccc--
Confidence 99999999999999999999 7889999999999999999999887766654321 1222211110000
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccC------ccEEEEecchhHHHHHHH
Q 039837 170 WSELIEAADKAGNNFSNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIG------QVTTLGLIPFFHIYGITG 243 (544)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~~~ 243 (544)
.. ...........+.+.+||||||.||||++||+++.+.+.+....+ .... .++++.++|++|.+|+..
T Consensus 173 -~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 247 (480)
T 3t5a_A 173 -NG--YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY--FADTDGIPPPNSALVSWLPFYHDMGLVI 247 (480)
T ss_dssp ------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH--CTTTTTCCCTTEEEEECCCTTSTTHHHH
T ss_pred -cC--CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh--ccccccCCCCCCeEEEeCCCcCccHHHH
Confidence 00 000111223344678999999999999999999999888776665 4455 899999999999999877
Q ss_pred HHHhhHhccceEEEcCcc----CHHHHHHHHHHcCceeeecchHHHHHHhcC----CCCCccCccccccccEEEecCCCC
Q 039837 244 ICCATLRNKGKVVMMNRF----ELRAFLDALITHEVTFAPIVPPIILSLVKD----PIVDEFDLSKLQLRAVMTAAAPLA 315 (544)
Q Consensus 244 ~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~~~~l~~~~v~~~G~~~~ 315 (544)
.++.++..|+++++.++. ++..+++.++++++| +..+|+++..++.. ......+++++|. +++||++++
T Consensus 248 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~--i~~gG~~l~ 324 (480)
T 3t5a_A 248 GICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILT--ILSGSERVQ 324 (480)
T ss_dssp HTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCE--EEECCTTCC
T ss_pred HHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhhe--eeecCCcCC
Confidence 889999999999998754 889999999999999 78899988887753 2334566788777 999999999
Q ss_pred HhHHHHHHhhc-----CCCeEEecccCccccccccccCCCCCC--------------------CCCCCCCcccccCCCce
Q 039837 316 PDLLSSFEKKF-----PGVQVQEAYGLTEHSCITLTYGDPANP--------------------SAGSKKNSVGFILPNLE 370 (544)
Q Consensus 316 ~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~--------------------~~~~~~~~~G~~~~~~~ 370 (544)
+++.++|.+.| +++.+++.||+||++..++........ .......++|+|++ ++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~ 403 (480)
T 3t5a_A 325 AATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PI 403 (480)
T ss_dssp HHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SE
T ss_pred HHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CE
Confidence 99999999988 456899999999999877654321110 00234458999999 99
Q ss_pred EEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccC-----------CCCeeecCceEEEcCCCcEEEEee
Q 039837 371 VKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTID-----------KNGWLHTGDIGYIDDDGDIFIVDR 437 (544)
Q Consensus 371 ~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~~~~~GR 437 (544)
++|+|++++++++.|+.|||+|+|++++.|||++|+.|.+.|. .++||+|||+|+++ ||++++.||
T Consensus 404 ~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred EEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9999977789999999999999999999999999999999885 56799999999996 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=9.5e-52 Score=402.64 Aligned_cols=314 Identities=16% Similarity=0.202 Sum_probs=265.2
Q ss_pred CCCCCCCCCCCcCcceeeccHHHHHHHHHhhccccCCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHH
Q 039837 185 SNDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELR 264 (544)
Q Consensus 185 ~~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~ 264 (544)
++++.|||||||.||||++||+++.+.+.+....+ ++.++|++++++|++|.+|+ ..++.++..|+++++.++. .
T Consensus 39 ~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 39 REFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL--SLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp SEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT--TCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--S
T ss_pred CEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh--CCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--c
Confidence 34789999999999999999999999998888877 78899999999999999998 5677788889998887642 1
Q ss_pred HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCccccccc
Q 039837 265 AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCIT 344 (544)
Q Consensus 265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 344 (544)
..++.++++++|++.++|+++..|++... ...++++++. +++||+++++++.+++.+. ++++++.||+||++..+
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~--v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~ 188 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGK--VLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHV 188 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCS--EEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceE--EEEcccCCCchheeccccc--CceEEecccccccccee
Confidence 23567889999999999999999998765 3446777777 9999999999999999874 89999999999998776
Q ss_pred cccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceE
Q 039837 345 LTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIG 424 (544)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~ 424 (544)
..... .....+.+|.+.||+.+.+.+ .|||+++|+.. .++||+|||+|
T Consensus 189 ~~~~~-----~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg 236 (358)
T 4gs5_A 189 ALKAL-----NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLV 236 (358)
T ss_dssp EEEEC-----SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEE
T ss_pred ecccc-----cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcc
Confidence 65431 344567889999999988744 39999998643 57899999999
Q ss_pred EEcCCCcEEEEeecCCceeecceeeChHHHHHHH---hcCCCccceEEE-eecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 039837 425 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL---LTHPSVEDAAVV-SLPDEEAGEIPAACVVMNPNAKESEDDIMD 500 (544)
Q Consensus 425 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 500 (544)
++|++| ++++||.||+||++|++|+|.+||++| .+||.|.+++|+ +.+++..|+.++++++... .....++|++
T Consensus 237 ~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~ 314 (358)
T 4gs5_A 237 EIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTERLTA 314 (358)
T ss_dssp EECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHHHHH
T ss_pred ccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHHHHH
Confidence 999888 677899999999999999999999877 457999998876 5677778888888877543 3445678999
Q ss_pred HHHhcccCCCceeEEEEeecCCCCCCcccchHHHHHHHHHhh
Q 039837 501 FVASNVATYKKVRVLHFVDGIPKSHSGKIMRRILKDKMLEKM 542 (544)
Q Consensus 501 ~l~~~l~~~~~p~~~~~~~~~P~t~~GKi~r~~l~~~~~~~~ 542 (544)
+++++|+.|++|..++++++||+|++|||+|++|++++.+..
T Consensus 315 ~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 315 EIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred HHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999886643
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=6.6e-48 Score=388.01 Aligned_cols=322 Identities=16% Similarity=0.161 Sum_probs=266.0
Q ss_pred CCCCCCCCCcCcceeeccHHHHHHHHHhhcccc-CCcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCccCHHH
Q 039837 187 DDDVKQTDLWISKGVMLTHRNLVANLCSTLFSV-VPEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNRFELRA 265 (544)
Q Consensus 187 ~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~ 265 (544)
...+||||||.||+|++||+++.+.+......+ ..++.++++++..+|+.|..+....++.++..|+++++.+..++..
T Consensus 90 ~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 169 (436)
T 3qov_A 90 RIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKR 169 (436)
T ss_dssp EEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHH
T ss_pred EEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHH
Confidence 568899999999999999999977665553221 1267889999999999777776677888999999999988889999
Q ss_pred HHHHHHHcCceeeecchHHHHHHhcCCCCCccC--ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcccccc
Q 039837 266 FLDALITHEVTFAPIVPPIILSLVKDPIVDEFD--LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTEHSCI 343 (544)
Q Consensus 266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 343 (544)
+++.++++++|++.++|+++..|++.......+ +++++. +++||+++++++.+++.+.| ++++++.||+||+++.
T Consensus 170 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~ 246 (436)
T 3qov_A 170 QIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKT--LVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGP 246 (436)
T ss_dssp HHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCE--EEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEE
T ss_pred HHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccE--EEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCC
Confidence 999999999999999999999998764433333 566666 99999999999999999999 8999999999999544
Q ss_pred ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCce
Q 039837 344 TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDI 423 (544)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~ 423 (544)
++.... ......|.+.+++.++|+|++++++++.|+.|||+|+|.. ...+ +.+||+|||+
T Consensus 247 ~~~~~~-------~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~~y~TGDl 306 (436)
T 3qov_A 247 GVAFEC-------QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLIRYRTRDL 306 (436)
T ss_dssp EEEEEC-------TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCCSEEEEEE
T ss_pred eeEEec-------CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEEEEEcCCE
Confidence 222211 1123367788899999999889999999999999999842 2233 6789999999
Q ss_pred EEEcCCC------c---EEEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCC
Q 039837 424 GYIDDDG------D---IFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKES 494 (544)
Q Consensus 424 ~~~~~~g------~---~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 494 (544)
|+++++| . +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++. +...+
T Consensus 307 ~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~ 385 (436)
T 3qov_A 307 TRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTD 385 (436)
T ss_dssp ECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCC
T ss_pred EEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccccc
Confidence 9999998 5 699999999999999999999999999999999999999998877788999999988 55444
Q ss_pred ----HHHHHHHHHhcccCC-CceeEEEEee--cCCCCCCcccchHH
Q 039837 495 ----EDDIMDFVASNVATY-KKVRVLHFVD--GIPKSHSGKIMRRI 533 (544)
Q Consensus 495 ----~~~l~~~l~~~l~~~-~~p~~~~~~~--~~P~t~~GKi~r~~ 533 (544)
.+++.+++++.|+.+ ++|..+++++ +||+|+ ||++|..
T Consensus 386 ~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 386 NYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred chhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 578999999999988 9999999998 999999 9999863
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=7.4e-47 Score=381.16 Aligned_cols=324 Identities=18% Similarity=0.207 Sum_probs=265.8
Q ss_pred CCCCCCCCCCcCcceeeccHHHHHHHHHhhcc---ccCCcccCccEEEEecch-hHHHHHHHHHHhhHhccceEEEcCcc
Q 039837 186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLF---SVVPEMIGQVTTLGLIPF-FHIYGITGICCATLRNKGKVVMMNRF 261 (544)
Q Consensus 186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~ 261 (544)
....+||||||.||+|++||+++.+....... .+ ++..+++++..+|+ +|..++ ...+.++..|+++++.+..
T Consensus 95 ~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~ 171 (443)
T 2y4o_A 95 VRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA--GGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVPMSGG 171 (443)
T ss_dssp CEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT--TCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEECCCSC
T ss_pred EEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEECCCC
Confidence 35678999999999999999998876554432 33 67889999999998 455555 5678889999999998888
Q ss_pred CHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccC--ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837 262 ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFD--LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE 339 (544)
Q Consensus 262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE 339 (544)
++..+++.|+++++|++.++|+++..|++.......+ +++++. +++||+++++++.+++.+.| ++++++.||+||
T Consensus 172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE 248 (443)
T 2y4o_A 172 QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKI--GIFGAEPWTQALRNEVETRV-GIDALDIYGLSE 248 (443)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCE--EEEESSCCCHHHHHHHHHHH-TCEEEEEEEETT
T ss_pred CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceE--EEECCCcCCHHHHHHHHHHh-CcCEEeccCchh
Confidence 9999999999999999999999999998754322222 356666 99999999999999999999 899999999999
Q ss_pred cccc-ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCee
Q 039837 340 HSCI-TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL 418 (544)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 418 (544)
+++. +.... . . . ....+.+.+++.++|+|++++++++.|+.|||+|+|.. ...| +.+||
T Consensus 249 ~~g~~~~~~~----~-~-~-~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t------------~~~~-p~~~y 308 (443)
T 2y4o_A 249 VMGPGVACEC----V-E-T-KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT------------KEAM-PVIRY 308 (443)
T ss_dssp TTEEEEEEEC----T-T-T-CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-CCSSE
T ss_pred hcCCeEEecc----C-C-C-CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC------------cccC-hhhee
Confidence 7432 33221 1 1 1 11255677899999999878999999999999999732 2234 67899
Q ss_pred ecCceEEEcCC-CcE-----EEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCC--C
Q 039837 419 HTGDIGYIDDD-GDI-----FIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNP--N 490 (544)
Q Consensus 419 ~TGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~ 490 (544)
+|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|.++|+|.++++++++++..++.+++++++.+ +
T Consensus 309 ~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~ 388 (443)
T 2y4o_A 309 RTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA 388 (443)
T ss_dssp EEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred ecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc
Confidence 99999999999 986 899999999999999999999999999999999999988877666788899998865 2
Q ss_pred ---CCCCHHHHHHHHHhcccCC-CceeEEEEe--ecCCCCCCcccchHHHH
Q 039837 491 ---AKESEDDIMDFVASNVATY-KKVRVLHFV--DGIPKSHSGKIMRRILK 535 (544)
Q Consensus 491 ---~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~~P~t~~GKi~r~~l~ 535 (544)
...+.+++.++++++|+.+ .+|..+.++ ++||+|++||++|...+
T Consensus 389 ~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 389 ASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 1234578999999999886 588888887 59999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.2e-46 Score=379.06 Aligned_cols=321 Identities=17% Similarity=0.196 Sum_probs=265.2
Q ss_pred CCCCCCCCCCcCcceeeccHHHHHHHHHhhcc---ccCCcccCccEEEEecch-hHHHHHHHHHHhhHhccceEEEcCcc
Q 039837 186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLF---SVVPEMIGQVTTLGLIPF-FHIYGITGICCATLRNKGKVVMMNRF 261 (544)
Q Consensus 186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~ 261 (544)
....+||||||.||+|++||+++......... .+ ++..+++++..+|+ +|..++ ...+.++..|+++++.+..
T Consensus 93 ~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~ 169 (437)
T 2y27_A 93 SRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA--GARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIPFGGG 169 (437)
T ss_dssp CEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT--TCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEECCCSC
T ss_pred EEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEeCCCC
Confidence 35678999999999999999998876654332 33 67889999999998 566665 5678889999999988888
Q ss_pred CHHHHHHHHHHcCceeeecchHHHHHHhcCCCCCccC--ccccccccEEEecCCCCHhHHHHHHhhcCCCeEEecccCcc
Q 039837 262 ELRAFLDALITHEVTFAPIVPPIILSLVKDPIVDEFD--LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQEAYGLTE 339 (544)
Q Consensus 262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE 339 (544)
++..+++.++++++|++.++|+++..|++.......+ +++++. +++||+++++++.+++.+.| ++++++.||+||
T Consensus 170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE 246 (437)
T 2y27_A 170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRI--GIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSE 246 (437)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCE--EEEESSCCCHHHHHHHHHHH-TSEEEEEEEETT
T ss_pred CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeE--EEEcCccCCHHHHHHHHHHH-CcCEEecCCchh
Confidence 9999999999999999999999999998754322222 356666 99999999999999999988 899999999999
Q ss_pred cccc-ccccCCCCCCCCCCCCCcccccCCCceEEEEeCCCCCcCCCCCCceEEEecccccccccCChhhhhcccCCCCee
Q 039837 340 HSCI-TLTYGDPANPSAGSKKNSVGFILPNLEVKFINPETGKSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWL 418 (544)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 418 (544)
+++. +.... . . .....+.+.+++.++|+|+++|++++.|+.|||+++|. +...+ +.+||
T Consensus 247 ~~g~~~~~~~-~----~--~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y 306 (437)
T 2y27_A 247 VMGPGVASEC-V----E--TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRY 306 (437)
T ss_dssp TTEEEEEECC-T----T--TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSE
T ss_pred hcCCeeEEec-C----C--CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhhee
Confidence 8432 33221 1 1 11125667899999999987899999999999999983 22334 67899
Q ss_pred ecCceEEEcC-CCcE-----EEEeecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCC
Q 039837 419 HTGDIGYIDD-DGDI-----FIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAK 492 (544)
Q Consensus 419 ~TGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 492 (544)
+|||+|++++ +|++ ++.||.||+||++|++|+|.+||++|.++|+|.++++++++++..++.+++++++.++..
T Consensus 307 ~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~ 386 (437)
T 2y27_A 307 RTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA 386 (437)
T ss_dssp EEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT
T ss_pred ecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc
Confidence 9999999998 6985 899999999999999999999999999999999999988877767788999998876543
Q ss_pred ---CCHHHHHHHHHhcccCC-CceeEEEEe--ecCCCCCCcccchHH
Q 039837 493 ---ESEDDIMDFVASNVATY-KKVRVLHFV--DGIPKSHSGKIMRRI 533 (544)
Q Consensus 493 ---~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~~P~t~~GKi~r~~ 533 (544)
.+.+++.++++++|+.+ .+|..+.++ ++||+|+ ||++|..
T Consensus 387 ~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 387 PDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred chhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 23478999999999987 689888888 5999999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=5.8e-29 Score=244.19 Aligned_cols=234 Identities=17% Similarity=0.131 Sum_probs=174.3
Q ss_pred CCCCCCCCCCcCcceeeccHHHHHHHHHhhccccC-CcccCccEEEEecch-hHHHHHHHHHHhhHhccceEEEcCccCH
Q 039837 186 NDDDVKQTDLWISKGVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPF-FHIYGITGICCATLRNKGKVVMMNRFEL 263 (544)
Q Consensus 186 ~~~~~tsgttG~PKgV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~ 263 (544)
..+.+||||||.||+|++||+++.+...+....+. .++..+++++..+|+ +|..|+. ..+.++..|+ +++...+++
T Consensus 94 a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v~~~~~dp 171 (369)
T 3hgu_A 94 PQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MFFSIDIDP 171 (369)
T ss_dssp CEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CEECCCCCH
T ss_pred EEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EEECccCCh
Confidence 45678999999999999999999998875543221 267889999999999 9988884 4455588888 666666677
Q ss_pred H-----------------------HHHHHHHHcCceeeecchHHHHHHhcCCCCCccCccccccccEEEecCCCCHhHHH
Q 039837 264 R-----------------------AFLDALITHEVTFAPIVPPIILSLVKDPIVDEFDLSKLQLRAVMTAAAPLAPDLLS 320 (544)
Q Consensus 264 ~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~v~~~G~~~~~~~~~ 320 (544)
. .+++.++++++|++.++|+++..|++........+++++. +++||+++++++.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~--i~~gGe~l~~~~~~ 249 (369)
T 3hgu_A 172 RWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQ--ITLGGTELNLDEIK 249 (369)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSE--EEEESSCCCHHHHH
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeE--EEECCccCCHHHHH
Confidence 6 7888999999999999999999998864322344566666 99999999999999
Q ss_pred HHH-hhcCCCeEEecccCccccccccccCCCCCCCCCCCCCccccc------CCCceEEEEeCCCCCcCCCCCCceEEEe
Q 039837 321 SFE-KKFPGVQVQEAYGLTEHSCITLTYGDPANPSAGSKKNSVGFI------LPNLEVKFINPETGKSLPSNTPGELCVR 393 (544)
Q Consensus 321 ~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 393 (544)
++. +.||++++++.||+||+++++..+. . .++|++ .++++++|+|++++++++.|+.|||+|+
T Consensus 250 ~~~~~~~p~~~v~~~YG~TE~~~~~~~~~------~----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt 319 (369)
T 3hgu_A 250 FIASEILPDCEFSASYGSTSALGVSRSLL------I----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT 319 (369)
T ss_dssp HHHHHTCTTSEEEEEEEEGGGTEEEEECC------B----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEE
T ss_pred HHHHHhCCCcEEEcccCchhhhcceeccc------c----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEE
Confidence 999 9999999999999999987664332 0 147888 9999999999779999999999999999
Q ss_pred cccccccccCChhhhhcccCCCCeeecCceEEEcCC--C-------cEEEEeecCCceeecce
Q 039837 394 SQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD--G-------DIFIVDRIKELIKYKGF 447 (544)
Q Consensus 394 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~~~~~GR~~d~i~~~G~ 447 (544)
+.... .+ -.+|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 320 ~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 320 HLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 74311 11 235999999988543 2 25566777777777664
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.56 E-value=5.7e-15 Score=115.96 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=73.5
Q ss_pred eecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCC----CHHHHHHHHHhccc-CCC
Q 039837 436 DRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKE----SEDDIMDFVASNVA-TYK 510 (544)
Q Consensus 436 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~-~~~ 510 (544)
||.||+|+++|.+++|.+||++|.+||+|.++++++.+++..++.+++++++ ++... +.+++.+.+++.+. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777677889999988 54322 33566666666654 344
Q ss_pred ceeEEEEee--cCCCCCCcccchH
Q 039837 511 KVRVLHFVD--GIPKSHSGKIMRR 532 (544)
Q Consensus 511 ~p~~~~~~~--~~P~t~~GKi~r~ 532 (544)
++..+++++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 555788886 89999 9999874
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.56 E-value=7.9e-15 Score=115.45 Aligned_cols=95 Identities=19% Similarity=0.326 Sum_probs=74.0
Q ss_pred eecCCceeecceeeChHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcccC-CCc
Q 039837 436 DRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESE---DDIMDFVASNVAT-YKK 511 (544)
Q Consensus 436 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~-~~~ 511 (544)
.|.||+|+++|.|++|.+||++|.+||+|.++++++.++...++.+.++++..++...+. +++.+.+++.+.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999998888899999999887765544 3455555555542 234
Q ss_pred eeEEEEe--ecCCCCCCcccch
Q 039837 512 VRVLHFV--DGIPKSHSGKIMR 531 (544)
Q Consensus 512 p~~~~~~--~~~P~t~~GKi~r 531 (544)
+..++++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 5456666 589998 699988
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.54 E-value=4.9e-07 Score=91.09 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=99.9
Q ss_pred ccccccccEEEecCCCCHhHHHHHHhhcCCCeEE-ecccCccccccccccCCCCCCCCCCCCCcccc-cCCC-ceEEEEe
Q 039837 299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ-EAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPN-LEVKFIN 375 (544)
Q Consensus 299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d 375 (544)
++.+++-.++++|. + ......+++.+++.+++ ..|++||. .+.+... ....+...+. .+++ .-.+.++
T Consensus 301 WPnlk~l~~~~tG~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~------p~~~p~~~~~~L~p~~~ffEFIP 371 (609)
T 4b2g_A 301 WPNTKYLDVIVTGA-M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLN------PMSKPSEVSYTIMPNMAYFEFLP 371 (609)
T ss_dssp STTCCEEEEECSGG-G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSC------TTSCGGGCCEEECTTSCEEEEEE
T ss_pred CCCCcEEEEEccCC-h-HHHHHHHHHHcCCCccccCcccccce-eeeeecC------CCCCcccCceeecCCcEEEEEEe
Confidence 56655433444443 2 44446666666677777 88999995 3333211 1111112222 2333 4455665
Q ss_pred CCCC---------------CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC----CCcEEEEe
Q 039837 376 PETG---------------KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD----DGDIFIVD 436 (544)
Q Consensus 376 ~~~~---------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~G 436 (544)
.++. ..+..|+.+||+++..+ |.|+ |++||++++.. ..++.+.|
T Consensus 372 ~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~g 434 (609)
T 4b2g_A 372 HEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVR 434 (609)
T ss_dssp GGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEE
Confidence 3321 24678999999998643 4443 99999999974 46799999
Q ss_pred ecCCceeecceeeChHHHHHHHhc------CCC--ccceEEEeecCCCCCceeEEEEEeC
Q 039837 437 RIKELIKYKGFQVAPAELEAILLT------HPS--VEDAAVVSLPDEEAGEIPAACVVMN 488 (544)
Q Consensus 437 R~~d~i~~~G~~v~~~~iE~~l~~------~~~--v~~~~v~~~~~~~~~~~~~~~v~~~ 488 (544)
|.++++.+.|+++.+.+||++|.+ ..+ |.+..+.... ...+..-+.++++.
T Consensus 435 R~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~-~~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 435 RKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT-KTIPGHYVIYWELL 493 (609)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC-SSSSCEEEEEEEEE
T ss_pred ecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC-CCCCCcEEEEEEEe
Confidence 999999999999999999999974 222 5566654322 22223444445553
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.41 E-value=1.3e-06 Score=87.63 Aligned_cols=163 Identities=10% Similarity=0.069 Sum_probs=101.1
Q ss_pred ccccccccEEEecCCCCHhHHHHHHhhcCCCeEE-ecccCccccccccccCCCCCCCCCCCCCccc-ccCCC-ceEEEEe
Q 039837 299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ-EAYGLTEHSCITLTYGDPANPSAGSKKNSVG-FILPN-LEVKFIN 375 (544)
Q Consensus 299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~i~d 375 (544)
++.+++-.++++|.. .....++++.+++.++. ..|++||. .+.+... ....++..+ ..+|+ .-.+.++
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~------p~~~~~~~~~~L~p~~~ffEFiP 371 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVT------PRLSPEEATFAVIPNLGYFEFLP 371 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCC------TTSCTTTCCEEECTTSCEEEEEE
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeeecC------CCCCccccceeecCCcEEEEEEe
Confidence 566655335555533 34446666666677877 88999995 3333211 111111122 23333 3345554
Q ss_pred CCCC----------CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcCC----CcEEEEeecCCc
Q 039837 376 PETG----------KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDDD----GDIFIVDRIKEL 441 (544)
Q Consensus 376 ~~~~----------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~~~~~GR~~d~ 441 (544)
.++. ..+..|+.+||++++.+ |.|+ |++||++++..- .++.+.||.+++
T Consensus 372 ~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~ 434 (581)
T 4epl_A 372 VSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLI 434 (581)
T ss_dssp C-------CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred cccccCCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCe
Confidence 2221 35678999999999753 3332 999999998642 579999999999
Q ss_pred eeecceeeChHHHHHHHhcC--------CCccceEEEeecCCCCCceeEEEEEeC
Q 039837 442 IKYKGFQVAPAELEAILLTH--------PSVEDAAVVSLPDEEAGEIPAACVVMN 488 (544)
Q Consensus 442 i~~~G~~v~~~~iE~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~ 488 (544)
+.+.|+++...+||++|.+. -.|.+..+.... ...+..-+.++++.
T Consensus 435 l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~-~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 435 LSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV-STDPGHYAIFWEIS 488 (581)
T ss_dssp BCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC-SSSSCEEEEEEEES
T ss_pred EEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC-CCCCCcEEEEEeec
Confidence 99999999999999998752 246677665532 22223444555654
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.38 E-value=9.3e-07 Score=88.97 Aligned_cols=137 Identities=15% Similarity=0.227 Sum_probs=89.7
Q ss_pred ccccccccEEEecCCCCHhHHHHHHhhcCCCeEE-ecccCccccccccccCCCCCCCCCCCCCcccc-cCCC-ceEEEEe
Q 039837 299 LSKLQLRAVMTAAAPLAPDLLSSFEKKFPGVQVQ-EAYGLTEHSCITLTYGDPANPSAGSKKNSVGF-ILPN-LEVKFIN 375 (544)
Q Consensus 299 ~~~l~~~~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d 375 (544)
++.+++-.+++.|.. ......+++.+++.+++ ..|++||. .+.+... ....+...+. .+++ .-.+.++
T Consensus 296 WPnl~~l~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~------p~~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 296 WPNTKYIETVVTGSM--GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLD------PLCKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp STTCCEEEEECSGGG--GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSC------TTSCGGGCCEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEcCCCh--HHHHHHHHHHcCCCccccCccccccc-eeeeccC------CCCCcccCceeecCCcEEEEEEe
Confidence 455454334444442 44556666666678877 88999994 3332211 1111112232 2333 4456665
Q ss_pred CCCC--------CcCCCCCCceEEEecccccccccCChhhhhcccCCCCeeecCceEEEcC----CCcEEEEeecCCcee
Q 039837 376 PETG--------KSLPSNTPGELCVRSQCVMQGYYNNEEETARTIDKNGWLHTGDIGYIDD----DGDIFIVDRIKELIK 443 (544)
Q Consensus 376 ~~~~--------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~ 443 (544)
.++. ..+..|+.+||++++.+ |.|+ |++||++++.. ..++.|.||.++++.
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~ 429 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLS 429 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEEC
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEE
Confidence 3221 24568899999999753 3333 99999999975 367999999999999
Q ss_pred ecceeeChHHHHHHHhcC
Q 039837 444 YKGFQVAPAELEAILLTH 461 (544)
Q Consensus 444 ~~G~~v~~~~iE~~l~~~ 461 (544)
+.|+++...+||++|.+.
T Consensus 430 ~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 430 IDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SSSCCEEHHHHHHHHHHC
T ss_pred eeeeECCHHHHHHHHHHH
Confidence 999999999999999854
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.76 E-value=0.93 Score=44.40 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=69.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837 63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV--AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140 (544)
Q Consensus 63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 140 (544)
.+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..++++.. +.+.+...+++.++.+++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEE
Confidence 579999998888888888888999999999988853 33344567888999999877654 788899999999999999
Q ss_pred eccchHHHh
Q 039837 141 SYAPIYEKV 149 (544)
Q Consensus 141 ~~~~~~~~~ 149 (544)
..+..+..+
T Consensus 188 ~~Ps~~~~l 196 (437)
T 2y27_A 188 VTPSYMLSI 196 (437)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 887765544
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.47 E-value=1.1 Score=44.09 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=69.8
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837 63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA--EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140 (544)
Q Consensus 63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 140 (544)
.+|.+.+...+..++..+...|+.++|++...++-+. ..+...++++..|+..++++.. +.+.+...+++.++.+++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence 5799999988888888888889999999999888542 3345568888999999887664 788889999999999999
Q ss_pred eccchHHHh
Q 039837 141 SYAPIYEKV 149 (544)
Q Consensus 141 ~~~~~~~~~ 149 (544)
..+..+..+
T Consensus 190 ~~Ps~~~~l 198 (443)
T 2y4o_A 190 VTPSYMLNL 198 (443)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 877765544
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.21 E-value=1.2 Score=43.64 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=70.1
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837 63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNV--AEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140 (544)
Q Consensus 63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 140 (544)
.+|.+.+...+..++..+...|+.++|++....+-+ ...+..+++++..|+..++.+.. .++.+...+++.++.+++
T Consensus 105 ~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~~ 183 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTALH 183 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEEE
T ss_pred EECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEEE
Confidence 589999999998888888888999999999988753 33444678888999998887654 678889999999999999
Q ss_pred eccchHHHh
Q 039837 141 SYAPIYEKV 149 (544)
Q Consensus 141 ~~~~~~~~~ 149 (544)
..+..+..+
T Consensus 184 ~~P~~~~~l 192 (436)
T 3qov_A 184 AIPSYAIRL 192 (436)
T ss_dssp CCHHHHHHH
T ss_pred ECHHHHHHH
Confidence 877765544
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.81 E-value=13 Score=36.90 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=71.1
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc-cHHHHHHHHHHhcCeeecCCC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA-EYGIVALGIMAAGGVFSGANP 120 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~ 120 (544)
.|+.+|++.-.+| -.+|.+.+...+..+.. ..++.++|++...+|-.. ..+..+++.+..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 5677776532122 35899998877665544 358899999998888543 23344677888999988775
Q ss_pred CCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 121 TAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 121 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
..+++.+...+++.++.++...+..+..+
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 265 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWL 265 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHH
Confidence 46788999999999999999887766554
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=81.41 E-value=5.2 Score=37.89 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=62.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc--HHHHHHHHHHhcCeeecCCCCCCHH---------------
Q 039837 63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE--YGIVALGIMAAGGVFSGANPTAHAS--------------- 125 (544)
Q Consensus 63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~--------------- 125 (544)
.+|.+.+...+..++..+...|+.++|++...++-+.. -+...++++..|+.+++.+ .++.
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~ 187 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVR 187 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHH
T ss_pred EECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhH
Confidence 47999998888877777777899999999999886332 2334455588898655543 3444
Q ss_pred --------HHHHHHHhcCceEEEeccchHHHhh
Q 039837 126 --------ELKKQVDAADAKLIVSYAPIYEKVK 150 (544)
Q Consensus 126 --------~l~~~l~~~~~~~ii~~~~~~~~~~ 150 (544)
.+...+++.++.+++..+..+..+.
T Consensus 188 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 188 KYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6666889999999998877665543
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=75.37 E-value=13 Score=37.53 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=70.0
Q ss_pred CceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH--HHHHHHHHHhcCeeecCCCC
Q 039837 51 DKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY--GIVALGIMAAGGVFSGANPT 121 (544)
Q Consensus 51 ~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~~~ 121 (544)
+.+|++.-.+| -.+|.+.+...+......+...++.++|++...++-+..+ ...+++.+ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 77776532222 3589999887766554443335788999998888765333 23356677 999888775 5
Q ss_pred CCHHHHHHHHHhcCceEEEeccchHHHhh
Q 039837 122 AHASELKKQVDAADAKLIVSYAPIYEKVK 150 (544)
Q Consensus 122 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 150 (544)
.+++.+...+++.++++++..+..+..+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 67889999999999999998877766553
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=73.32 E-value=27 Score=34.99 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=70.0
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHH---HHHHHHHhcCeeecC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGI---VALGIMAAGGVFSGA 118 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l 118 (544)
.|+.+|++.-.+| -.+|.+.+...+...+.. .++.++|++...+|-+..+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4577776532122 358999998777665544 478999999988885543332 367888899988876
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 119 NPTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 119 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
+ ...+..+...+++.+++.+...+..+..+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMW 295 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence 5 45788888999999999999877765543
No 49
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=73.13 E-value=30 Score=34.54 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHH--H-HHHHHHHhcCeeecC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG--I-VALGIMAAGGVFSGA 118 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~-~~lA~~~~G~~~v~l 118 (544)
.|+.+|++.-.+| -.+|.+.+...+...... .++.++|++...+|-+..+- . .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4677776532122 358999988776655443 47889999988888654332 2 478888999998876
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 119 NPTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 119 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
+ ..+++.+...+++.+++++...+..+..+
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 286 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVW 286 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 5 46788999999999999998877665543
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=71.13 E-value=33 Score=34.09 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=67.7
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHH--HHHHHHHhcCeeecCC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGI--VALGIMAAGGVFSGAN 119 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~ 119 (544)
.|+.+|++.-.+| -.+|.+.+...+..++.. .++.++|++...++-....-. .+++++ .|+..+..+
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~ 243 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC
Confidence 3567775421122 358999988777665544 488999999988886543332 245555 888888664
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 120 PTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
...+..+...+++.++.++...+..+..+
T Consensus 244 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 272 (517)
T 3r44_A 244 -QFDATKVWSLIVEERVCIGGAVPAILNFM 272 (517)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEeHHHHHHHH
Confidence 57888999999999999999887766554
No 51
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=70.41 E-value=19 Score=35.72 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=70.6
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc-cHHHHHHHHHHhcCeeecCCC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA-EYGIVALGIMAAGGVFSGANP 120 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~ 120 (544)
.++.+|++.-.+| -.+|++.+...+..... ..++.++|++...++-+. ..+..+++.+..|+..+.++.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4566775421122 35899988876655443 357899999999988653 334557888899999888765
Q ss_pred C--CCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 121 T--AHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 121 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
. ..+..+...+++.++.++...+.....+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4677888999999999998887766554
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.22 E-value=18 Score=36.30 Aligned_cols=88 Identities=7% Similarity=-0.024 Sum_probs=65.3
Q ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc-cHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEE
Q 039837 62 KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA-EYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIV 140 (544)
Q Consensus 62 ~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 140 (544)
-.+|.+.+...+......+...++.++|++...++-.. ..+...++.+..|+..+.++ ...++.+...+++.++++++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 35899988776655444443457889999988888553 23445677788999888764 56788999999999999999
Q ss_pred eccchHHHhh
Q 039837 141 SYAPIYEKVK 150 (544)
Q Consensus 141 ~~~~~~~~~~ 150 (544)
..+..+..+.
T Consensus 287 ~~P~~~~~l~ 296 (550)
T 3rix_A 287 LVPTLFSFFA 296 (550)
T ss_dssp ECHHHHHHHH
T ss_pred eCcHHHHHHH
Confidence 8877766543
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=63.40 E-value=52 Score=32.45 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=63.9
Q ss_pred cCCceEEE---EccCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHH-HHHhcCeeecCC
Q 039837 49 YADKVAFV---EAVSG----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY-GIVALG-IMAAGGVFSGAN 119 (544)
Q Consensus 49 ~p~~~a~~---~~~~~----~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~lA-~~~~G~~~v~l~ 119 (544)
.|+.+|++ .+.+| -.+|.+.+...+..+.. ..++.++|++...+|-...+ +...+. ++..|+.+++.
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~- 233 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA- 233 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-
Confidence 45666654 22222 35899998877765554 34789999999988855332 223333 44445555443
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 120 PTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
..+++.+...+++.++.++...+..+..+
T Consensus 234 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 262 (509)
T 3ivr_A 234 -KFDPAQAARDIEAHKVTVMAEFAPMLGNI 262 (509)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEEETTHHHHH
T ss_pred -ccCHHHHHHHHHHHCCcEEEecHHHHHHH
Confidence 67889999999999999998877765554
No 54
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=62.58 E-value=30 Score=29.72 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=55.2
Q ss_pred ccEEEEecch-hHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCceeeec------chHH--HHHHhcCCCCC
Q 039837 226 QVTTLGLIPF-FHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTFAPI------VPPI--ILSLVKDPIVD 295 (544)
Q Consensus 226 ~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~------~P~~--~~~l~~~~~~~ 295 (544)
..+++...+- .|..|.......--..|..++... ...++.+.+.+.+++++.+.. ++++ +..+++..+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 3444544443 577777555555666788887765 467899999999999987766 2222 22222211111
Q ss_pred ccCccccccccEEEecCCCCHhHHHH
Q 039837 296 EFDLSKLQLRAVMTAAAPLAPDLLSS 321 (544)
Q Consensus 296 ~~~~~~l~~~~v~~~G~~~~~~~~~~ 321 (544)
... ..+ . +++||.+++++.++.
T Consensus 173 ~~~-~~v-~--v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 KLR-DSV-K--CMFGGAPVSDKWIEE 194 (215)
T ss_dssp TCG-GGS-E--EEEESSSCCHHHHHH
T ss_pred CCC-CCC-E--EEEECCCCCHHHHHH
Confidence 110 011 2 789999999876554
No 55
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=61.54 E-value=32 Score=32.20 Aligned_cols=96 Identities=22% Similarity=0.180 Sum_probs=61.3
Q ss_pred hcCCceEEE---EccCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc-cHHHHHHHHHHhcCeeecCC
Q 039837 48 LYADKVAFV---EAVSG----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVA-EYGIVALGIMAAGGVFSGAN 119 (544)
Q Consensus 48 ~~p~~~a~~---~~~~~----~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~ 119 (544)
...|.+|++ .+.+| -.+|++.+...+..++.. .+++++|++...+|-+. ..+..++..+..|+..+..+
T Consensus 34 w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 34 WLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred cCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 355677764 33233 358999988776655443 47899999998888543 33444566667787777666
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 120 PTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
+.... ...+++.++..+...+..+..+
T Consensus 111 ~~~~~---~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 111 PTANP---LAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp CCSCT---TTTCSSCCCSEEEECHHHHHHH
T ss_pred ccccH---HHHHHHhCCeEEEcChHHHHHh
Confidence 54332 3456677777777766554443
No 56
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=61.36 E-value=84 Score=31.94 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=68.4
Q ss_pred cCCceEEE-Ec--cCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH--HH-HHHHHHHhcCeeecC
Q 039837 49 YADKVAFV-EA--VSG----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY--GI-VALGIMAAGGVFSGA 118 (544)
Q Consensus 49 ~p~~~a~~-~~--~~~----~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~v~l 118 (544)
.|+.+|++ +. .+| -.+|.+.+...+...... .++.++|++...++-+..+ .. .+++.+..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 35677765 32 112 358999988777655544 3688999999988854433 22 367888889888876
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 119 NPTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 119 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
+. .....+...+++.+++++...+..+..+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 54 5677888899999999998877665543
No 57
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=61.07 E-value=42 Score=33.21 Aligned_cols=98 Identities=9% Similarity=0.126 Sum_probs=70.0
Q ss_pred cCCceEEE-Ec--cCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHHhcCeeecCCC
Q 039837 49 YADKVAFV-EA--VSG----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY-GIVALGIMAAGGVFSGANP 120 (544)
Q Consensus 49 ~p~~~a~~-~~--~~~----~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 120 (544)
.++.+|++ +. .+| -.+|.+.+...+..++. ..++.++|++...++-+... +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 35667754 22 122 35899998877665443 35788999999998866443 3457888899999887765
Q ss_pred C--CCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 121 T--AHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 121 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
. ..+..+...+++.++.+++..+..+..+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4677888999999999998887766544
No 58
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=58.45 E-value=37 Score=33.50 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCCccHH--HHHHHHHHhcCeeec
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGL--RKGQVVIVVLPNVAEYG--IVALGIMAAGGVFSG 117 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi--~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~v~ 117 (544)
.|+.+|++.-.+| -.+|.+.+...+..++. ..++ .++|++...+|-...+- ..+++.+..|+..+.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 4677776532122 35898888776655433 3467 78899988887654332 346788889999887
Q ss_pred CCCCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 118 ANPTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 118 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
.+. ..+..+...+++.++++++..+..+..+
T Consensus 228 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 258 (504)
T 1t5h_X 228 VEE-FRPVDALQLVQQEQVTSLFATPTHLDAL 258 (504)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCeEEEeChHHHHHH
Confidence 754 6788889999999999999877765544
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=58.21 E-value=33 Score=34.72 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHH--HHHHHHHhcCeeecCC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGI--VALGIMAAGGVFSGAN 119 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~ 119 (544)
.|+.+|++.-.+| -.+|.+.+...+...+. ..++.++|++...+|-...+-. .+++.+..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 4677776532122 35899999887766544 3578999999999886654433 3788889999988776
Q ss_pred CCC---CHHHHHHHHHhcCceEEEeccchHHH
Q 039837 120 PTA---HASELKKQVDAADAKLIVSYAPIYEK 148 (544)
Q Consensus 120 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~ 148 (544)
+.. .+..+...+++.++.++......+..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 273 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDY 273 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHH
Confidence 532 46678888999999988776655443
No 60
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=57.26 E-value=61 Score=32.64 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=67.1
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHH--HHHHHHHHhcCeeecCC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYG--IVALGIMAAGGVFSGAN 119 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~ 119 (544)
.|+.+|++.-.+| -.+|.+ +....... .....|+.++|++...++-+..+- ..+++.+..|+..+..+
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 4567776532122 357888 44321111 124458899999988888664433 24677888898877665
Q ss_pred C-CCCHHHHHHHHHhcCceEEEeccchHHHhh
Q 039837 120 P-TAHASELKKQVDAADAKLIVSYAPIYEKVK 150 (544)
Q Consensus 120 ~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 150 (544)
. ...+..+...+++.++.+++..+..+..+.
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 3 678899999999999999998877766553
No 61
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=53.52 E-value=28 Score=34.95 Aligned_cols=86 Identities=10% Similarity=-0.073 Sum_probs=65.8
Q ss_pred eeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCceee
Q 039837 201 VMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFA 278 (544)
Q Consensus 201 V~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 278 (544)
-.+|++.+...+..+...+.. +..+++++...++-... +...+++++..|+..+..++ ....++...+++.++..+
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~ 128 (549)
T 3g7s_A 51 ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTL 128 (549)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEE
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEE
Confidence 467888888777666654432 67889999888887654 34678899999999998874 678889999999999999
Q ss_pred ecchHHHHHH
Q 039837 279 PIVPPIILSL 288 (544)
Q Consensus 279 ~~~P~~~~~l 288 (544)
++.+.....+
T Consensus 129 i~~~~~~~~~ 138 (549)
T 3g7s_A 129 VVHSMLYENF 138 (549)
T ss_dssp EEEGGGHHHH
T ss_pred EEChHHHHHH
Confidence 8877654433
No 62
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=53.29 E-value=32 Score=34.45 Aligned_cols=86 Identities=8% Similarity=-0.172 Sum_probs=65.7
Q ss_pred eeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCcee
Q 039837 200 GVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTF 277 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 277 (544)
+..+|++.+...+..+...+.. +..+++++...++-... +...+++++..|+..+..++ ....++...+++.++..
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 122 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 122 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcE
Confidence 4568999888777666554432 67888999888887653 34677889999999998864 57888999999999999
Q ss_pred eecchHHHHH
Q 039837 278 APIVPPIILS 287 (544)
Q Consensus 278 ~~~~P~~~~~ 287 (544)
+++.+.....
T Consensus 123 vi~~~~~~~~ 132 (541)
T 1v25_A 123 LLFDPNLLPL 132 (541)
T ss_dssp EEECGGGHHH
T ss_pred EEEChhHHHH
Confidence 9887765443
No 63
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=51.46 E-value=1.1e+02 Score=30.13 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=66.6
Q ss_pred cCCceEEE-Ec--cCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc--HHHHHHHHHHhcCeeecCC
Q 039837 49 YADKVAFV-EA--VSG----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAE--YGIVALGIMAAGGVFSGAN 119 (544)
Q Consensus 49 ~p~~~a~~-~~--~~~----~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 119 (544)
.|+.+|++ +. .+| -.+|.+.+...+..++..+ ++.++|++...++-... ++..+++.+..|+..+..+
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 45677764 22 122 3589999988887666554 78899999887775432 2334688889999988764
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 120 PTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
....+.+...+ +.++..++..+..+..+
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l 257 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRI 257 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHH
Confidence 46677777777 67888888877765544
No 64
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=50.41 E-value=29 Score=34.63 Aligned_cols=84 Identities=5% Similarity=-0.102 Sum_probs=64.6
Q ss_pred eeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCcee
Q 039837 200 GVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTF 277 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 277 (544)
+-.+|++.+...+..+...+.. +..+++++...++-... +...+++++..|+..+..++ ....++...++..++..
T Consensus 47 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 124 (536)
T 3ni2_A 47 GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKL 124 (536)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEE
T ss_pred CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEE
Confidence 3568999988877666654432 67889999888887654 44678899999999998874 57888999999999999
Q ss_pred eecchHHH
Q 039837 278 APIVPPII 285 (544)
Q Consensus 278 ~~~~P~~~ 285 (544)
+++.....
T Consensus 125 ~i~~~~~~ 132 (536)
T 3ni2_A 125 LITQACYY 132 (536)
T ss_dssp EEECGGGT
T ss_pred EEEChHHH
Confidence 98876543
No 65
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=48.25 E-value=30 Score=34.42 Aligned_cols=83 Identities=8% Similarity=-0.083 Sum_probs=62.9
Q ss_pred eeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCceee
Q 039837 201 VMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFA 278 (544)
Q Consensus 201 V~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 278 (544)
..+|++.+...+..+...+.. +..+++++...++-... +...+++++..|+..+..+. ..+.++...+++.++..+
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 124 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEE
Confidence 468999888877666654432 67788999888877654 34677889999999998764 578888889999999888
Q ss_pred ecchHHH
Q 039837 279 PIVPPII 285 (544)
Q Consensus 279 ~~~P~~~ 285 (544)
++.+...
T Consensus 125 i~~~~~~ 131 (529)
T 2v7b_A 125 IASGALV 131 (529)
T ss_dssp EEEGGGH
T ss_pred Eechhhh
Confidence 8776543
No 66
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=47.39 E-value=40 Score=33.30 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=63.7
Q ss_pred eeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCcee
Q 039837 200 GVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTF 277 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 277 (544)
+-.+|++.+...+..+...+.. +..+++++...++-... +...+++++..|+..+..++ ....++...+++.++..
T Consensus 26 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 26 GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 3468999988877666654432 67888999888887654 34678899999999998874 57888889999999999
Q ss_pred eecchH
Q 039837 278 APIVPP 283 (544)
Q Consensus 278 ~~~~P~ 283 (544)
+++.+.
T Consensus 104 vi~~~~ 109 (503)
T 4fuq_A 104 VVCDPS 109 (503)
T ss_dssp EEECGG
T ss_pred EEECch
Confidence 887764
No 67
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=45.82 E-value=42 Score=34.62 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=64.2
Q ss_pred eeeccHHHHHHHHHhhccccC--CcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCce
Q 039837 200 GVMLTHRNLVANLCSTLFSVV--PEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVT 276 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t 276 (544)
...+|++.|...+..+...+. .+..++|++...+|...- +...+++++..|+..+... .+...++...+++.++.
T Consensus 111 ~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~ 188 (663)
T 1ry2_A 111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE--AIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSK 188 (663)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCS
T ss_pred eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCe
Confidence 456899988887776665553 277899999999888764 3467889999999999876 56888999999999999
Q ss_pred eeecch
Q 039837 277 FAPIVP 282 (544)
Q Consensus 277 ~~~~~P 282 (544)
++++..
T Consensus 189 ~li~~~ 194 (663)
T 1ry2_A 189 VVITTD 194 (663)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 888754
No 68
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=43.88 E-value=47 Score=33.41 Aligned_cols=85 Identities=9% Similarity=-0.082 Sum_probs=64.7
Q ss_pred eeccHHHHHHHHHhhccccC-CcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCceee
Q 039837 201 VMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFA 278 (544)
Q Consensus 201 V~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 278 (544)
..+|++.+...+..+...+. .++.+++++...++-... +...+++++..|+..+..++ ....++...+++.++..+
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~l 140 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARML 140 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEE
Confidence 46899988877766655442 267788999888877653 44678899999999998874 577889999999999999
Q ss_pred ecchHHHHH
Q 039837 279 PIVPPIILS 287 (544)
Q Consensus 279 ~~~P~~~~~ 287 (544)
++.+.....
T Consensus 141 i~~~~~~~~ 149 (563)
T 1amu_A 141 LTQKHLVHL 149 (563)
T ss_dssp EECGGGHHH
T ss_pred EEcCchhhh
Confidence 887765443
No 69
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=40.55 E-value=53 Score=33.75 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=62.5
Q ss_pred eeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCcee
Q 039837 200 GVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTF 277 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~ 277 (544)
...+|++.|...+..+...+.. +..++|++...+|-... +...+++++..|+..+... .+.+.++...+++.++.+
T Consensus 105 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e--~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 182 (652)
T 1pg4_A 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE--AAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRL 182 (652)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCE
Confidence 4568898888777666654432 67889999988888764 3467888999999998876 467888999999999888
Q ss_pred eecch
Q 039837 278 APIVP 282 (544)
Q Consensus 278 ~~~~P 282 (544)
+++..
T Consensus 183 li~~~ 187 (652)
T 1pg4_A 183 VITAD 187 (652)
T ss_dssp EEEES
T ss_pred EEEcC
Confidence 87643
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=40.05 E-value=52 Score=33.23 Aligned_cols=81 Identities=6% Similarity=-0.120 Sum_probs=62.7
Q ss_pred eeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCcee
Q 039837 200 GVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTF 277 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 277 (544)
...+|.+.+...+..+...+.. ++.++|++...++-... +...+++++..|+..+..++ ....++...+++.++..
T Consensus 84 ~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 161 (580)
T 3etc_A 84 EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKM 161 (580)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCE
T ss_pred EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCE
Confidence 4578999888777666654432 77889999988887654 44678899999999998764 67888999999999988
Q ss_pred eecch
Q 039837 278 APIVP 282 (544)
Q Consensus 278 ~~~~P 282 (544)
+++.+
T Consensus 162 ii~~~ 166 (580)
T 3etc_A 162 IVCIA 166 (580)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 87654
No 71
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=39.49 E-value=98 Score=31.52 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=68.7
Q ss_pred cCCceEEE-E--ccCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHHhcCeeecCC-
Q 039837 49 YADKVAFV-E--AVSG----KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY-GIVALGIMAAGGVFSGAN- 119 (544)
Q Consensus 49 ~p~~~a~~-~--~~~~----~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~- 119 (544)
.|+.+|++ + +.+| -.+|.+.+...+. .....++.++|++...++-+.+. +..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 46777764 2 2222 3589988755432 22335789999999998876544 334678888898877653
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 120 PTAHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
...+++.+...+++.+++.+...+..+..+
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l 267 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTL 267 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHH
Confidence 356789999999999999999887766655
No 72
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=39.19 E-value=87 Score=28.89 Aligned_cols=92 Identities=14% Similarity=0.005 Sum_probs=54.0
Q ss_pred CceEEEEccCCceeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHH
Q 039837 51 DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLG-LRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKK 129 (544)
Q Consensus 51 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~G-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 129 (544)
.++.+....-+.+=++++-... ..+ ....+.| +++|+.|.+....+-.-..+-++|...|..++.+-|...+.....
T Consensus 35 ~~i~~K~E~~~ptGSfK~R~a~-~~i-~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 112 (334)
T 3tbh_A 35 AKVVLKMECENPMASVKDRLGF-AIY-DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRC 112 (334)
T ss_dssp SEEEEEEGGGSTTSBTHHHHHH-HHH-HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEeCCCCCccCcHHHHHH-HHH-HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 3555554322333456553221 122 2334455 488888644445566666777778888986654444434445567
Q ss_pred HHHhcCceEEEeccc
Q 039837 130 QVDAADAKLIVSYAP 144 (544)
Q Consensus 130 ~l~~~~~~~ii~~~~ 144 (544)
.++..++++++++..
T Consensus 113 ~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 113 LLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 788999999988654
No 73
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=37.15 E-value=63 Score=32.48 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=62.8
Q ss_pred eeccHHHHHHHHHhhccccC-CcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCceee
Q 039837 201 VMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFA 278 (544)
Q Consensus 201 V~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 278 (544)
-.+|++.+...+..+...+. .+..+++++...++-... +...+++++..|+..+..++ ....++...+++.++..+
T Consensus 99 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~ 176 (570)
T 4gr5_A 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFD--MVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLL 176 (570)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEE
Confidence 35788888777766655443 267889999888887654 34678899999999998874 578889999999999888
Q ss_pred ecchHH
Q 039837 279 PIVPPI 284 (544)
Q Consensus 279 ~~~P~~ 284 (544)
++....
T Consensus 177 i~~~~~ 182 (570)
T 4gr5_A 177 VTSRPL 182 (570)
T ss_dssp EECTTT
T ss_pred Eecchh
Confidence 876543
No 74
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=36.14 E-value=70 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=21.3
Q ss_pred CHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHH
Q 039837 37 TLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTR 74 (544)
Q Consensus 37 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~ 74 (544)
.|...|...+...|+...++.+ ++..+|+.+.+-..
T Consensus 31 ~L~~~l~~~~~~~~~~~V~I~a--D~~~~y~~vv~vmd 66 (74)
T 2jwk_A 31 MVTQLSRQEFDKDNNTLFLVGG--AKEVPYEEVIKALN 66 (74)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEE--CTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHH
Confidence 3455555555566666666655 45667766655444
No 75
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=35.91 E-value=74 Score=29.91 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCC-----CCCHHHHHHHHHhcC--ceEEEe
Q 039837 79 ALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP-----TAHASELKKQVDAAD--AKLIVS 141 (544)
Q Consensus 79 ~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~ii~ 141 (544)
.|...++++||.|.+..+.... ..-++...|+.++.++. ..+.+.++..+...+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3445578999999877665443 33456678987665543 246888888774444 677764
No 76
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=35.45 E-value=63 Score=31.46 Aligned_cols=88 Identities=9% Similarity=-0.088 Sum_probs=66.9
Q ss_pred eeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc----cCHHHHHHHHHHcC
Q 039837 200 GVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR----FELRAFLDALITHE 274 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~ 274 (544)
...+|++.+...+..+...+.. + .+++++...++-... +...+++++..|+..+..+. ....++...+++.+
T Consensus 56 ~~~~Ty~el~~~~~~lA~~L~~~g-~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~ 132 (480)
T 3t5a_A 56 AITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLE--YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSS 132 (480)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTTSS-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHC
T ss_pred eEEEcHHHHHHHHHHHHHHHHhcC-CCCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCC
Confidence 3678999998888777766543 4 378888877777654 44678899999999998764 34577888899999
Q ss_pred ceeeecchHHHHHHhc
Q 039837 275 VTFAPIVPPIILSLVK 290 (544)
Q Consensus 275 ~t~~~~~P~~~~~l~~ 290 (544)
+..++..+.....+.+
T Consensus 133 ~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 133 PVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSEEEECTTTHHHHHH
T ss_pred CCEEEeChhHHHHHHH
Confidence 9999988877666544
No 77
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=35.19 E-value=2.1e+02 Score=28.10 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=67.6
Q ss_pred cCCceEEEEccCC-------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccH-HHHHHHHHHhcCeeecCCC
Q 039837 49 YADKVAFVEAVSG-------KAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEY-GIVALGIMAAGGVFSGANP 120 (544)
Q Consensus 49 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 120 (544)
.|+.+|++.-.+| -.+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.++.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 3567776532122 3589999876655333221 14678889988887765433 4556778888998887765
Q ss_pred C--CCHHHHHHHHHhcCceEEEeccchHHHh
Q 039837 121 T--AHASELKKQVDAADAKLIVSYAPIYEKV 149 (544)
Q Consensus 121 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 149 (544)
. .....+...+.+.++.++...+.....+
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 4 3677888999999999998877765443
No 78
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=33.98 E-value=73 Score=29.46 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=50.8
Q ss_pred eeeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEE
Q 039837 63 AYTYAQVARDTRGFA---KALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI 139 (544)
Q Consensus 63 ~~Ty~el~~~~~~la---~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 139 (544)
.+++.+......... ..++..++++|++|+|....+.-.+++++|....|+.++.++.+ .++ ..+++...+..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 366666544333222 23556689999999999887777777777776667766655433 433 456777788777
Q ss_pred Eec
Q 039837 140 VSY 142 (544)
Q Consensus 140 i~~ 142 (544)
+..
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=31.99 E-value=76 Score=31.78 Aligned_cols=86 Identities=7% Similarity=-0.151 Sum_probs=64.0
Q ss_pred eeeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cC-------HHHHHHHH
Q 039837 200 GVMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FE-------LRAFLDAL 270 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~-------~~~~~~~i 270 (544)
.-.+|++.+...+..+...+.. +..+++++...++-... +...+++++..|+..+..+. .. ..++...+
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 4578999998877766655432 67888999888887654 44678899999999998763 33 56788888
Q ss_pred HHcCceeeecchHHHHH
Q 039837 271 ITHEVTFAPIVPPIILS 287 (544)
Q Consensus 271 ~~~~~t~~~~~P~~~~~ 287 (544)
+..++..++........
T Consensus 125 ~~~~~~~ii~~~~~~~~ 141 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPL 141 (576)
T ss_dssp HHHCCSEEEECGGGHHH
T ss_pred HhcCCCEEEecHHHHHH
Confidence 88999988887654433
No 80
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=31.99 E-value=1.2e+02 Score=20.77 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=34.5
Q ss_pred hHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 039837 451 PAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATYK 510 (544)
Q Consensus 451 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~ 510 (544)
..++++.|.+.|+|.+|..+..+.+ ..+.+.. .+.+++.+.+.+.+....
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-----~d~~~l~~~i~~~l~~~~ 64 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-----DTLKDLDQFITEKIRKMP 64 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-----SSHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-----CCHHHHHHHHHHHhccCC
Confidence 4789999999999999988754433 2333332 366788888876665443
No 81
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=31.86 E-value=32 Score=30.56 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCC
Q 039837 74 RGFAKALRSLGLRKGQVVIVVLPNV 98 (544)
Q Consensus 74 ~~la~~L~~~Gi~~gd~V~i~~~n~ 98 (544)
..+.+.|+++||++||.|.+++.=+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567789999999999999998843
No 82
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=31.46 E-value=1.3e+02 Score=27.75 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=56.8
Q ss_pred CCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHH
Q 039837 50 ADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLG-LRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELK 128 (544)
Q Consensus 50 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~G-i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 128 (544)
.-++.+....-+.+=||++=-. ...+... .+.| +++|.+..+....+-.-..+-++|.+.|..++.+=|...+....
T Consensus 49 G~~IylK~E~lnptGSfK~RgA-~~~i~~a-~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~ 126 (344)
T 3vc3_A 49 GAYVAVKQEMMQPTASIADRPA-YAMITDA-EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERR 126 (344)
T ss_dssp CSEEEEEEGGGSTTSBTTHHHH-HHHHHHH-HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CCEEEEEecCCCCCCCcHHHHH-HHHHHHH-HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHH
Confidence 3355555432233445554221 2223333 3444 57887655666667777777888889998766555555555667
Q ss_pred HHHHhcCceEEEeccc
Q 039837 129 KQVDAADAKLIVSYAP 144 (544)
Q Consensus 129 ~~l~~~~~~~ii~~~~ 144 (544)
..++..++++++++..
T Consensus 127 ~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 127 VTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEECCC
Confidence 7889999999987643
No 83
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=30.35 E-value=88 Score=21.56 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=26.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcC
Q 039837 63 AYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGG 113 (544)
Q Consensus 63 ~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 113 (544)
.+.+.++.+ .+.+.++.++..|.++|..+..+..+...+...|.
T Consensus 23 ~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 23 NIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp ECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 455555543 33344556677777777777666666666666665
No 84
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=29.73 E-value=37 Score=30.37 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCC
Q 039837 75 GFAKALRSLGLRKGQVVIVVLPNV 98 (544)
Q Consensus 75 ~la~~L~~~Gi~~gd~V~i~~~n~ 98 (544)
.+.+.|+++||++||.|.+++.=+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 356788999999999999998743
No 85
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=29.60 E-value=37 Score=30.44 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=24.1
Q ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 039837 61 GKAYTYAQVARDTRGFAKALRSLGLRKGQVVIVVLPN 97 (544)
Q Consensus 61 ~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n 97 (544)
+..+|-++| .+.|+++||++||.|.+++.=
T Consensus 19 ~~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 19 RELVTRDRL-------ASDLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CCEECHHHH-------HHHHHHHTCCTTCEEEEEECS
T ss_pred CCCcCHHHH-------HHHHHHcCCCCCCEEEEEech
Confidence 466777665 457889999999999999874
No 86
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=27.46 E-value=1.1e+02 Score=30.41 Aligned_cols=79 Identities=9% Similarity=-0.052 Sum_probs=59.3
Q ss_pred eeccHHHHHHHHHhhccccCC-cccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcCc-cCHHHHHHHHHHcCceee
Q 039837 201 VMLTHRNLVANLCSTLFSVVP-EMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMNR-FELRAFLDALITHEVTFA 278 (544)
Q Consensus 201 V~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 278 (544)
-.+|++.+...+..+...+.. +. +++++...++-... +...+++++..|+..+..++ ....++...+++.++..+
T Consensus 54 ~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~ 130 (562)
T 3ite_A 54 EDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI--AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMA 130 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEE
Confidence 568999888877666654432 44 68888888877654 34678899999999998874 577888888999888877
Q ss_pred ecch
Q 039837 279 PIVP 282 (544)
Q Consensus 279 ~~~P 282 (544)
++..
T Consensus 131 i~~~ 134 (562)
T 3ite_A 131 FVCD 134 (562)
T ss_dssp EECT
T ss_pred EEcc
Confidence 6643
No 87
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=26.78 E-value=1e+02 Score=33.46 Aligned_cols=83 Identities=8% Similarity=-0.069 Sum_probs=64.4
Q ss_pred eeeccHHHHHHHHHhhccccC-CcccCccEEEEecchhHHHHHHHHHHhhHhccceEEEcC-ccCHHHHHHHHHHcCcee
Q 039837 200 GVMLTHRNLVANLCSTLFSVV-PEMIGQVTTLGLIPFFHIYGITGICCATLRNKGKVVMMN-RFELRAFLDALITHEVTF 277 (544)
Q Consensus 200 gV~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~ 277 (544)
+..+|++.+...+..+...+. .++.+++++...+|-.. .+...+++++..|+..+..+ .+.+.++...+++.++.+
T Consensus 86 ~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~--e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~ 163 (979)
T 3tsy_A 86 GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP--EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKL 163 (979)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH--HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEE
T ss_pred CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH--HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeE
Confidence 456899988887766665443 26788999988888765 34467889999999999876 467888999999999999
Q ss_pred eecchHH
Q 039837 278 APIVPPI 284 (544)
Q Consensus 278 ~~~~P~~ 284 (544)
+++.+..
T Consensus 164 vi~~~~~ 170 (979)
T 3tsy_A 164 IITEARY 170 (979)
T ss_dssp EEECSTT
T ss_pred EEEChHH
Confidence 9887654
No 88
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=24.87 E-value=2.3e+02 Score=26.50 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=38.3
Q ss_pred HHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCC----CCHHHHHHHHHhc--CceEEEec
Q 039837 80 LRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT----AHASELKKQVDAA--DAKLIVSY 142 (544)
Q Consensus 80 L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~ 142 (544)
++..++++||.|.+..+....... ++...|+.++.++.+ .+.+.++..++.. ++++++..
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 333457899999888776655433 334578766655432 4678888888764 56666654
No 89
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=24.77 E-value=1.3e+02 Score=21.48 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCHHHHHHhhhhhcCCceEEEEccCCceeeHHHHHHHHHHHHHHHHHcCC
Q 039837 36 VTLPDFVLQDAELYADKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLGL 85 (544)
Q Consensus 36 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi 85 (544)
..|...|...+...|+...++.. ++..+|+.+.+-.. .+++.|+
T Consensus 42 ~~L~~~l~~~~~~~~~~~V~I~a--D~~~~y~~vv~vmd----~l~~aG~ 85 (99)
T 2pfu_A 42 ETMITALNALTEGKKDTTIFFRA--DKTVDYETLMKVMD----TLHQAGY 85 (99)
T ss_dssp SSHHHHHHHHSSSCCSSCEEEEE--CTTCCHHHHHHHHH----HHHHTCC
T ss_pred HHHHHHHHHHHhcCCCceEEEEc--CCCCCHHHHHHHHH----HHHHcCC
Confidence 35666776666666776666665 56677777665554 4455554
No 90
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=24.20 E-value=1.7e+02 Score=27.17 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHH--cCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEEEec
Q 039837 79 ALRS--LGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLIVSY 142 (544)
Q Consensus 79 ~L~~--~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 142 (544)
.|.+ .++++|++|+|.....+-.+++++|-...|+.++.++. +.++ ..+++..+++.++..
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEK-LKLAERLGADHVVDA 238 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHHHHHhCCCEEEec
Confidence 4555 78999999999999667777888777543776555543 3444 345567788777653
No 91
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=23.87 E-value=2.2e+02 Score=27.65 Aligned_cols=69 Identities=9% Similarity=-0.044 Sum_probs=50.0
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHH----hc--CeeecCCCCCC-H------HHHHHHHHhcCceEEE
Q 039837 75 GFAKALRSLG-LRKGQVVIVVLPNVAEYGIVALGIMA----AG--GVFSGANPTAH-A------SELKKQVDAADAKLIV 140 (544)
Q Consensus 75 ~la~~L~~~G-i~~gd~V~i~~~n~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~ii 140 (544)
++.+.+.+.+ +.++++|++.+.-+.|+++++..+.. .| ..++-++..+. . +.++.+++..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4556677765 58899999999999999999887776 34 45667777765 2 2456667777777766
Q ss_pred ecc
Q 039837 141 SYA 143 (544)
Q Consensus 141 ~~~ 143 (544)
..-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 543
No 92
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=23.83 E-value=1.9e+02 Score=25.31 Aligned_cols=68 Identities=10% Similarity=-0.086 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc----CeeecCCCCCC--HHHHHHHHHhcCceEEEec
Q 039837 72 DTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG----GVFSGANPTAH--ASELKKQVDAADAKLIVSY 142 (544)
Q Consensus 72 ~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G----~~~v~l~~~~~--~~~l~~~l~~~~~~~ii~~ 142 (544)
..+++..+|++. .++.|++.+.-+.++.++..-+.+++ ...+.++...+ .+..+.+.+..++.+.+.+
T Consensus 9 ~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~~~~i~ 82 (257)
T 2e18_A 9 VIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVIN 82 (257)
T ss_dssp HHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 345566677765 45689999999999988876666664 33455554433 3344555566666655543
No 93
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=23.40 E-value=3.1e+02 Score=24.84 Aligned_cols=70 Identities=9% Similarity=0.043 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEEcCCCccHHHHHHHHHHh----c---CeeecCCCCCC------HHHHHHHHHhcCceE
Q 039837 73 TRGFAKALRSLG-LRKGQVVIVVLPNVAEYGIVALGIMAA----G---GVFSGANPTAH------ASELKKQVDAADAKL 138 (544)
Q Consensus 73 ~~~la~~L~~~G-i~~gd~V~i~~~n~~~~~~~~lA~~~~----G---~~~v~l~~~~~------~~~l~~~l~~~~~~~ 138 (544)
.+++.+.+.+.+ +.++++|++.+.-+.|+.+++..+... | ..++.++.... .+.+..+.+..+..+
T Consensus 8 ~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~ 87 (317)
T 1wy5_A 8 IRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKI 87 (317)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcE
Confidence 455666776654 578999999999999999998877764 3 44566666653 223455566666665
Q ss_pred EEec
Q 039837 139 IVSY 142 (544)
Q Consensus 139 ii~~ 142 (544)
.+..
T Consensus 88 ~v~~ 91 (317)
T 1wy5_A 88 FVGK 91 (317)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 94
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=23.25 E-value=1.8e+02 Score=26.58 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=49.0
Q ss_pred eeeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceEE
Q 039837 63 AYTYAQVARDTRG---FAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKLI 139 (544)
Q Consensus 63 ~~Ty~el~~~~~~---la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 139 (544)
.+++.+....... .-..|...++++|++|+|.....+-.+++.+|- ..|+.++.++. +.+++ .++++.+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEE
Confidence 4677765432221 123455568999999999988667888777776 45886665543 34443 45677788777
Q ss_pred Eec
Q 039837 140 VSY 142 (544)
Q Consensus 140 i~~ 142 (544)
+..
T Consensus 215 i~~ 217 (340)
T 3s2e_A 215 VNA 217 (340)
T ss_dssp EET
T ss_pred EeC
Confidence 643
No 95
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=22.78 E-value=2.2e+02 Score=21.47 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecC--CCCCCHHHHHHH
Q 039837 76 FAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGA--NPTAHASELKKQ 130 (544)
Q Consensus 76 la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~~~ 130 (544)
.+.+|...|+.+...+.+...+..+.+-++-=++++|...+.+ -+..+....+++
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RRL 102 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQL 102 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHHH
Confidence 3567888999888888888878889888888899998743322 245665554443
No 96
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=22.41 E-value=2.1e+02 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCC-------CCHHHHHHHHHhcCceEEEe
Q 039837 85 LRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPT-------AHASELKKQVDAADAKLIVS 141 (544)
Q Consensus 85 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~ 141 (544)
+++||.|.+..+.... ...++...|+.++.++.. .+.+.++..++..++++++.
T Consensus 106 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp SCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 3577877655443332 333455667766655542 56777777776556666654
No 97
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=22.36 E-value=1.7e+02 Score=27.06 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=50.2
Q ss_pred eeeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEcC-CCccHHHHHHHHHHhcCe-eecCCCCCCHHHHHHHHHhcCc
Q 039837 63 AYTYAQVARDT--RGFA-KALRS-LGLRKGQVVIVVLP-NVAEYGIVALGIMAAGGV-FSGANPTAHASELKKQVDAADA 136 (544)
Q Consensus 63 ~~Ty~el~~~~--~~la-~~L~~-~Gi~~gd~V~i~~~-n~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~ 136 (544)
.+++.+..... -..| ..|.+ .++++|++|+|... ..+-.+++++|-. .|+. ++..+.....++...+++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654321 1122 23444 48999999999997 5677778777764 5774 4445454444555667778888
Q ss_pred eEEEec
Q 039837 137 KLIVSY 142 (544)
Q Consensus 137 ~~ii~~ 142 (544)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 877753
No 98
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.24 E-value=2.5e+02 Score=26.33 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=37.3
Q ss_pred CCCCCCEEEEEcCCCcc------HHHHHHHHHH-hcCeeecCCCC--------CC----HHHHHHHHHhcCceEEEeccc
Q 039837 84 GLRKGQVVIVVLPNVAE------YGIVALGIMA-AGGVFSGANPT--------AH----ASELKKQVDAADAKLIVSYAP 144 (544)
Q Consensus 84 Gi~~gd~V~i~~~n~~~------~~~~~lA~~~-~G~~~v~l~~~--------~~----~~~l~~~l~~~~~~~ii~~~~ 144 (544)
-+++||+|+|++|.+.- .+-.....++ .|..++.-+.. -+ .+++...+.+-++++|+|...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58899999999998742 2222233333 57776644331 11 335556666678899988644
No 99
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=21.59 E-value=2.5e+02 Score=26.82 Aligned_cols=14 Identities=0% Similarity=-0.088 Sum_probs=7.3
Q ss_pred HHHhcCceEEEecc
Q 039837 130 QVDAADAKLIVSYA 143 (544)
Q Consensus 130 ~l~~~~~~~ii~~~ 143 (544)
.+...+++++.++.
T Consensus 141 ~~~~~G~~~~~v~~ 154 (430)
T 3ri6_A 141 TLPSFGIEVRFVDV 154 (430)
T ss_dssp HHHHTTCEEEEECT
T ss_pred HHHHcCCEEEEeCC
Confidence 44455555555543
No 100
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=21.38 E-value=2.8e+02 Score=25.18 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=50.3
Q ss_pred CceEEEEccCCceeeHHHHHHHHHHHHHHHHHcC-CCCCC-EEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHH
Q 039837 51 DKVAFVEAVSGKAYTYAQVARDTRGFAKALRSLG-LRKGQ-VVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELK 128 (544)
Q Consensus 51 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~G-i~~gd-~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 128 (544)
.++.+.....+.+-||++-... ..+. .+.+.| +++|. .|.. ...+-.-..+-+++.+.|..++.+-|...+....
T Consensus 30 ~~v~~K~E~~~ptGSfK~R~a~-~~l~-~a~~~G~~~~~~~~vv~-assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 106 (322)
T 1z7w_A 30 GRVAAKLEMMEPCSSVKDRIGF-SMIS-DAEKKGLIKPGESVLIE-PTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106 (322)
T ss_dssp SEEEEEEGGGSTTSBTHHHHHH-HHHH-HHHHTTSCCTTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred ceEEEEecccCCCCchHHHHHH-HHHH-HHHHcCCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 4555544322233455543222 1222 233455 46674 5544 4455555566677779998665544433334556
Q ss_pred HHHHhcCceEEEeccc
Q 039837 129 KQVDAADAKLIVSYAP 144 (544)
Q Consensus 129 ~~l~~~~~~~ii~~~~ 144 (544)
..++..++++++++..
T Consensus 107 ~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 107 IILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 6788899999988753
No 101
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.77 E-value=3.5e+02 Score=24.58 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCC--C----CCCHHHHHHHHHh----cCceEEEe
Q 039837 85 LRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN--P----TAHASELKKQVDA----ADAKLIVS 141 (544)
Q Consensus 85 i~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~----~~~~~~l~~~l~~----~~~~~ii~ 141 (544)
+++||.|.+..+....... ++...|+.++.++ . ..+.+.++..++. .++++++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~ 153 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYV---AAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALI 153 (371)
T ss_dssp CCTTCEEEEETTCCHHHHH---HHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred hCCCCEEEEccCcchHHHH---HHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEE
Confidence 4688998877665443333 3567787766555 2 2367888888875 35566554
No 102
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=20.57 E-value=2.2e+02 Score=19.84 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=33.0
Q ss_pred hHHHHHHHhcCCCccceEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 039837 451 PAELEAILLTHPSVEDAAVVSLPDEEAGEIPAACVVMNPNAKESEDDIMDFVASNVATY 509 (544)
Q Consensus 451 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 509 (544)
..++++.|.++|+|.++..+.-+.+ ..+.+.. .+.+++.+.+.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~-----~d~~~l~~~l~~~l~~~ 63 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRL-----KDVEELDDVVTQGILSL 63 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEE-----SSGGGHHHHCCCCCTTS
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEE-----CCHHHHHHHHHHhcccC
Confidence 4788999999999999999854433 3333332 35567777776555543
No 103
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=20.42 E-value=4.5e+02 Score=23.23 Aligned_cols=76 Identities=5% Similarity=0.011 Sum_probs=44.5
Q ss_pred eeeHHH-HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhc-------------CeeecCCC--CCCHHH
Q 039837 63 AYTYAQ-VARDTRGFAKALRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAG-------------GVFSGANP--TAHASE 126 (544)
Q Consensus 63 ~~Ty~e-l~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G-------------~~~v~l~~--~~~~~~ 126 (544)
.+++++ +.+.+..+..++++.|- ...|.+-+.-++++.++..-|.+++ .+.+.++. ..+.+.
T Consensus 16 ~~~~~~~i~~~~~~L~~~l~~~g~--~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~d 93 (275)
T 1wxi_A 16 QINAEEEIRRSVDFLKSYLQTYPF--IKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQD 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSTT--CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC--CCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHH
Confidence 355554 34456666666766551 2478888999999877754444442 33444442 224556
Q ss_pred HHHHHHhcCc-eEEE
Q 039837 127 LKKQVDAADA-KLIV 140 (544)
Q Consensus 127 l~~~l~~~~~-~~ii 140 (544)
.+.+.+..++ ...+
T Consensus 94 A~~va~~lgi~~~~~ 108 (275)
T 1wxi_A 94 CQDAIAFIQPDRVLT 108 (275)
T ss_dssp HHHHHHHHCCSEEEE
T ss_pred HHHHHHHcCCCeEEE
Confidence 6666666665 4444
No 104
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.41 E-value=2.4e+02 Score=23.62 Aligned_cols=82 Identities=7% Similarity=0.057 Sum_probs=41.2
Q ss_pred ceeeHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEEcCCC----ccHHHHHHHHHHhcCeeecCCCCCCHHHHHHH
Q 039837 62 KAYTYAQVARDTRGFAKALRS-------LGLRKGQVVIVVLPNV----AEYGIVALGIMAAGGVFSGANPTAHASELKKQ 130 (544)
Q Consensus 62 ~~~Ty~el~~~~~~la~~L~~-------~Gi~~gd~V~i~~~n~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 130 (544)
..++..|++..++.+-..+.. ..-..+-+|.+.+..+ +-..++-..+-..|.-++.+..+.+.+++...
T Consensus 55 g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 55 NEMFVPEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp ------------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 456666665555544444332 1112233555555432 23333344445678999999999999999999
Q ss_pred HHhcCceEEEecc
Q 039837 131 VDAADAKLIVSYA 143 (544)
Q Consensus 131 l~~~~~~~ii~~~ 143 (544)
++..++++|..+.
T Consensus 135 ~~~~~~d~v~lS~ 147 (210)
T 1y80_A 135 VKKYQPDIVGMSA 147 (210)
T ss_dssp HHHHCCSEEEEEC
T ss_pred HHHcCCCEEEEec
Confidence 9999999998764
No 105
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=20.28 E-value=2e+02 Score=26.70 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHcCCCCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCC--CC---CCHHHHHHHHHhcCceEEEec
Q 039837 80 LRSLGLRKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGAN--PT---AHASELKKQVDAADAKLIVSY 142 (544)
Q Consensus 80 L~~~Gi~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~~---~~~~~l~~~l~~~~~~~ii~~ 142 (544)
++..++++||.|.+..+..... .-++...|+.++.++ +. ...+.++..++. ++++++..
T Consensus 71 ~~~~~~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 71 LMALGIGEGDEVITPSMTWVST---LNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHHTTCCTTCEEEEESSSCHHH---HHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHHcCCCCCCEEEeCCCccHhH---HHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 3344567889887766554433 234556677655443 32 457777777654 56666653
No 106
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=20.28 E-value=2.7e+02 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCC--C--CCHHHHHHHHHhcCceEEEe
Q 039837 86 RKGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANP--T--AHASELKKQVDAADAKLIVS 141 (544)
Q Consensus 86 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~l~~~l~~~~~~~ii~ 141 (544)
++||.|.+..+....+.....++...|+.++.++. + .+.+.++..++. ++++++.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 145 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSI 145 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEE
Confidence 46677655544333333333333445665544432 2 345555555543 4454443
No 107
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=20.00 E-value=1.4e+02 Score=27.61 Aligned_cols=77 Identities=13% Similarity=-0.007 Sum_probs=46.9
Q ss_pred eeeHHHHHHHHHH---HHHHHHHcCCC-CCCEEEEEcCCCccHHHHHHHHHHhcCeeecCCCCCCHHHHHHHHHhcCceE
Q 039837 63 AYTYAQVARDTRG---FAKALRSLGLR-KGQVVIVVLPNVAEYGIVALGIMAAGGVFSGANPTAHASELKKQVDAADAKL 138 (544)
Q Consensus 63 ~~Ty~el~~~~~~---la~~L~~~Gi~-~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 138 (544)
.+++.+....... .-..|.+.+++ +|++|+|.....+-.+++.+|-. .|+.++.+..+ .+++....++.+++.
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCce
Confidence 4677764322111 11335566888 99999999876677777777764 57765544433 334444444677776
Q ss_pred EEec
Q 039837 139 IVSY 142 (544)
Q Consensus 139 ii~~ 142 (544)
++..
T Consensus 229 vi~~ 232 (357)
T 2cf5_A 229 YVIG 232 (357)
T ss_dssp EEET
T ss_pred eecc
Confidence 6643
Done!