BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039838
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 134 KEAQMVLFPVIENLLSKVQISPQDIDILI-INCSGFCPSPSLSSIIINKYSMKSDIKNFN 192
+EA+ + VI+ L ++ DID++I ++C+GF PSL++ +IN+ S +
Sbjct: 82 REAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIP 140
Query: 193 LSGMGCSASALAIDMAQALLKTQKDSDALVLSTEILSTGWYSGN-EKPKLLLNCLFRMGS 251
++ +GC+A AI+ A +++AL+++ E S + + LL N LF G
Sbjct: 141 IAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGI 200
Query: 252 VAVLLTNKK----QAKRSSKYKVVRT 273
A ++ + + +R+ Y + +T
Sbjct: 201 AAAVVRGRGGTGVRLERNGSYLIPKT 226
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 118/300 (39%), Gaps = 50/300 (16%)
Query: 168 FCPS-----PSLSSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQKDSDALV 222
FC + P ++ + +K + L G +A + +A+ L + K S L+
Sbjct: 134 FCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLI 193
Query: 223 LSTEILSTGWYSGNEK--PKLLLNCLFRMGSVAVLLTNKKQ-AKRSSKYKVVRTVRTNKA 279
+ +EI + ++ NE L+ LF G+ A+++ + A +++V T +T
Sbjct: 194 VCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILP 253
Query: 280 FDDKAYNSGMREEDSNGKLGVTLNRDLLQIAGETLR--ANITILGFKILPFRELFWLGVS 337
+KA +RE G L L+RD+ + + + A + I + +FW+
Sbjct: 254 DTEKAMKLHLRE----GGLTFQLHRDVPLMVAKNIENAAEKALSPLGITDWNSVFWM--- 306
Query: 338 VIKKGFIKNSCDVYVPNFKAAVQHFCLPVSGRPVIREIAKNLKLGERDIEAALMTLHRFG 397
+ GR ++ ++ + L L E + A+ L +G
Sbjct: 307 --------------------------VHPGGRAILDQVERKLNLKEDKLRASRHVLSEYG 340
Query: 398 NQSSSSLWY------ELAYMEAKERVKKG-DRVWLIGAGTGSKCGSVVLQCLRPIVGESN 450
N S+ + + + + E K +G D L G G G +VVL+ +R +N
Sbjct: 341 NLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVRVTAAVAN 400
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 68/304 (22%)
Query: 148 LSKVQISPQDIDILIINCSGFCPS---PSLSSIIINKYSMKSDIKNFNLSGMGCSASALA 204
L + +SP+++D++I+ + P PS + ++ + K + F++S CS A
Sbjct: 62 LREANLSPEELDLIIL--ATLTPQKRFPSTACLVQAQLKAKG-VYAFDISA-ACSGFIYA 117
Query: 205 IDMAQALLKTQKDSDALVLSTEILSTG--WYSGNEKPKLLLNC-LFRMGSVAVLLTNKKQ 261
+D+A + +K+ K + LV+ E LS W + C LF G+ AV++T
Sbjct: 118 LDIADSFIKSGKAKNVLVIGAEKLSEAVDWEDRS-------TCVLFGDGAGAVVVT---- 166
Query: 262 AKRSSKYKVVRTVRTNKAFDDKAYNSGMREE----DSNGKLGVTLNRDLLQIAGETLRAN 317
+ K ++ T + Y G EE D+ G + + R+L ++A
Sbjct: 167 -RSEDKSDILAT---------RMYAEGSLEELLHADNCGYIRMK-GRELFKVA------- 208
Query: 318 ITILGFKILPFRELFWLGVSVIKKGFIK-NSCDVYVPNFKAAVQHFCLPVSGRPVIREIA 376
R + + V++K +K + +P+ +A V+ +I +A
Sbjct: 209 ----------VRSMEEVCREVLEKAGVKPEEVSLVIPH-QANVR----------IINALA 247
Query: 377 KNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAKERVKKGDRVWLIGAGTGSKCGS 436
+ L + + E + + ++GN S++S+ L + +VK+GD + + G G G+
Sbjct: 248 EKLNIPK---EKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGLTWGA 304
Query: 437 VVLQ 440
V+L+
Sbjct: 305 VLLR 308
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/240 (19%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 172 PSLSSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQKDSDALVLSTEILSTG 231
P ++ +I+ + D++ +L+ MGC A ++ A +L K + LV+ TE+ S
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 232 WYSGNEKPKLLLNCLFRMGSVAVLLTNKKQAKRSSKYKVVRTVRTNKAFDDKAYNSGMRE 291
+ + + +++ + +F GS A ++ + + + Y+V+ ++ N++F +
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSI--NRSFPNTENAMVWDL 248
Query: 292 EDSNGKLGVTLNRDLLQIAGETLRANITI-LGFKILPFRELFWLGVSVIKKGFIKNSCDV 350
E LG L A+I I +G I F + +++ K ++ S +
Sbjct: 249 EKEGWNLG--------------LDASIPIVIGSGIEAFVD------TLLDKAKLQTSTAI 288
Query: 351 YVPNFKAAVQHFCLPVSGRPVIREIAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAY 410
+ + F + G+ ++ I +L + + + H +GN SS+S+ + + +
Sbjct: 289 SAKDCE-----FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH 343
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 149 SKVQISPQDIDILIINCSGFCPS-----PSLSSIIINKYSMKSDIK-NFNLSGMGCSASA 202
S++ +P + I I+ C G CP S++ IN Y++K I F G+ S
Sbjct: 89 SRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQ 148
Query: 203 LAIDMAQALLKTQKDSDALVLSTEILSTGWYSGNEKPKLLLNCLFRMGSVAVLLT 257
AI++ + + +L G G + PK +++ L R+G V +L T
Sbjct: 149 TAIELHRGRVTNIHHYGGTIL-------GSSRGPQDPKEMVDTLERLG-VNILFT 195
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 359 VQHFCLPVSGRPVIREIAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAKERVK 418
+ H +PVS R E+ L L D + G+ + + LA++ V+
Sbjct: 258 IAHAVIPVSRRGTGHELHDLLGL--PDERTSWAYGRTTGHVGAGDQYAGLAHLVENALVQ 315
Query: 419 KGDRVWLIGAGTGSKCGSVVLQCLR 443
GDRV L G G G C + V++ LR
Sbjct: 316 PGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 55/309 (17%)
Query: 141 FPVIENLLSKVQISPQDIDILIINCSGFCPS---PSLSSIIINKYSMKSDIKNFNLSGMG 197
F + + I PQ ID++I+ S P PS + ++ NK +++ F++ +
Sbjct: 70 FIASQRAIEAADIDPQSIDLIIVATS--TPDFVFPSTACLLQNKLGIRNHGAAFDVQAV- 126
Query: 198 CSASALAIDMAQALLKTQKDSDALVLSTEILSTGWYSGNEKPKLLLNCLFRMGSVAVLLT 257
S A A+ A + +++ + ALV+ E S +L+ F+ + VL
Sbjct: 127 XSGFAYAVATADSFIRSGQHRTALVIGAETFSR-----------ILD--FKDRTTCVL-- 171
Query: 258 NKKQAKRSSKYKVVRTVRTNKAFDDKAYNSGMREEDSNGKLGVTLNRD-----LLQIAGE 312
F D A ++ D G L L+ D +L G
Sbjct: 172 ----------------------FGDGAGAVILQASDEPGVLASALHADGSHSNILCTPGN 209
Query: 313 TLRANITILGFKILPFRELFWLGVSVIKKGFIKNSCDVYVPNFKAAVQHFCLPVSGR-PV 371
++ F + + +F L V+V++K ++ + N A + +P +
Sbjct: 210 VNGGVVSGSAFLHMDGQAVFKLAVNVLEKVAVEA---LEKANLSAEQIDWLIPHQANIRI 266
Query: 372 IREIAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAKERVKKGDRVWLIGAGTG 431
++ + L L + E ++T+ GN S++S+ L R+K+G V + G G G
Sbjct: 267 MQSTCRKLGLPQ---ERMIVTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGG 323
Query: 432 SKCGSVVLQ 440
G+ V++
Sbjct: 324 FTWGASVIR 332
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 359 VQHFCLPVSGRPVIREIAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAKERVK 418
+ H +PVS R E+ L L D + G+ + + LA++ V+
Sbjct: 258 IAHAVIPVSRRGTGHELHDLLGL--PDERTSWAYGRTTGHVGAGDQYAGLAHLVENALVQ 315
Query: 419 KGDRVWLIGAGTGSKCGSVVLQCLR 443
GDRV L G G G C + V++ LR
Sbjct: 316 PGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%)
Query: 157 DIDILIINCSGFCPSPSLSSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQK 216
+I +L++ S +P + I+ + + I ++ MGC+A+ A+ A ++
Sbjct: 134 EIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHP 193
Query: 217 DSDALVLSTEILSTGWYSGNEKPKLLLNCLFRMGSVAVLLTNKKQAKRSSKYKVV 271
ALV+ E+ S ++ ++++ LF G A+++ + ++ KVV
Sbjct: 194 AMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV 248
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%)
Query: 157 DIDILIINCSGFCPSPSLSSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQK 216
+I +L++ S +P + I+ + + I ++ MGC+A+ A+ A ++
Sbjct: 134 EIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHP 193
Query: 217 DSDALVLSTEILSTGWYSGNEKPKLLLNCLFRMGSVAVLLTNKKQAKRSSKYKVV 271
ALV+ E+ S ++ ++++ LF G A+++ + ++ KVV
Sbjct: 194 AMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV 248
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 117/301 (38%), Gaps = 46/301 (15%)
Query: 158 IDILIINCSGFCPSPSLSSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQKD 217
I LI+ C P + + +K F +GC A + +A+ + + K
Sbjct: 120 ITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKG 179
Query: 218 SDALVLSTEILSTGWYSGNEK--PKLLLNCLFRMGSVAVLL-TNKKQAKRSSKYKVVRTV 274
+ L++ +E+ +T + +E ++ LF G+ AV++ + +++V T
Sbjct: 180 ARVLIVCSEMTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIFELVSTA 239
Query: 275 RTNKAFDDKAYNSGMREEDSNGKLGVTLNRDLLQIAGETLRANITILGFKILPFRELFWL 334
+T +S+G I G L + ++ +K +P
Sbjct: 240 QTIVP-------------ESHG-----------AIEGHLLESGLSFHLYKTVP------- 268
Query: 335 GVSVIKKGFIKNSCDVYVP-NFKAAVQHFCLPVSGRPVI-REIAKNLKLGERDIEAALMT 392
++I D + P N F + G P I ++ + L + ++
Sbjct: 269 --TLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQV 326
Query: 393 LHRFGNQSSSSLWYELAYMEAKE----RVKKGDRV-W--LIGAGTGSKCGSVVLQCLRPI 445
L +GN SS+++++ + M K + G+ + W L G G G +VVL+ + P+
Sbjct: 327 LKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLRSV-PV 385
Query: 446 V 446
+
Sbjct: 386 I 386
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 122/306 (39%), Gaps = 52/306 (16%)
Query: 141 FPVIENLLSKVQISPQDIDILIINCSGFCPSPSLSSIIINKYSMKSDIKNFNLSGMGCSA 200
F +N + QI+PQDI+++I+ + + ++ + D +F+L+ +
Sbjct: 63 FEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDAISFDLAA-AXTG 121
Query: 201 SALAIDMAQALLKTQKDSDALVLSTEILSTGWYSGNEKPKLLLNCLFRMGSVAVLLTNKK 260
A+ +A ++ K ALV+ +++ S +E + + LF G+ AV+L +
Sbjct: 122 FVYALSVADQFIRAGKVKKALVIGSDLNSRKL---DETDRSTV-VLFGDGAGAVILEASE 177
Query: 261 QAKRSSKYKVVRTVRTNKAF----DDKAYNSGMREEDSNG--KLGVTLNRDLLQIAGETL 314
Q S + + N + SG E N KL V R+L + ETL
Sbjct: 178 QEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAV---RELSNVVEETL 234
Query: 315 RANITILGFKILPFRELFWLGVSVIKKGFIKNSCDVYVPNFKAAVQHFCLPVSGRPVIRE 374
AN L ++L WL VP+ + +R
Sbjct: 235 LAN-------NLDKKDLDWL-----------------VPH--------------QANLRI 256
Query: 375 IAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAKERVKKGDRVWLIGAGTGSKC 434
I K E D+ ++TL ++ N S++++ L R+++G + L G G
Sbjct: 257 ITATAKKLEMDMSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAFGGGWTW 316
Query: 435 GSVVLQ 440
GS +++
Sbjct: 317 GSALVR 322
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 119 ALQYIPPKTNQQESIKEA----QMVLFPVIENLLSKVQISPQDIDILIINCSGFCPSPSL 174
AL+ +P QE A Q L + D+D LI + S P L
Sbjct: 116 ALKAVPASQTVQERTAPAWEAVQAYGERAARGALQIAGLDVADVDCLITSNSTTPALPGL 175
Query: 175 SSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQKDSDALVLSTEILSTGWYS 234
+ N+ ++ D + C A ++ +A L+ D LV+ +E LST +
Sbjct: 176 DVALANRLPLRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTYQP 235
Query: 235 GNEK-PKLLLNCLFRMGSVAVLLTNKKQ 261
++ L++ LF +VA ++T + +
Sbjct: 236 ADDTLESLIVRLLFADTAVAAVVTGRPR 263
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 367 SGRPVIREIAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAK----ERVKKGDR 422
G ++ + L L ++ +EA L +GN SS+ + + L M K ER G+
Sbjct: 892 GGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGERATTGEG 951
Query: 423 V-W--LIGAGTGSKCGSVVLQCLRPIV 446
+ W L G G G +VVL + P+V
Sbjct: 952 LDWGVLFGFGPGLTIETVVLHSI-PMV 977
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 388 AALMTL-HRFGNQSSSSLWYELAYMEAKERVKKGDRVWLIGAGTGSKC 434
A +MT+ GN +S+ L+ ++ R+KKGDR+ L+G G+G C
Sbjct: 291 AKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNC 338
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 388 AALMTL-HRFGNQSSSSLWYELAYMEAKERVKKGDRVWLIGAGTGSKC 434
A +MT+ GN +S+ L+ ++ R+KKGDR+ L+G G+G C
Sbjct: 290 AKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNC 337
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 388 AALMTL-HRFGNQSSSSLWYELAYMEAKERVKKGDRVWLIGAGTGSKC 434
A +MT+ GN +S+ L+ ++ R+KKGDR+ L+G G+G C
Sbjct: 284 AKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNC 331
>pdb|1MC4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Vibrio Cholerae El Tor
pdb|3PZR|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Nadp And Product
Of S-Carbamoyl-L-Cysteine
pdb|3PZR|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Nadp And Product
Of S-Carbamoyl-L-Cysteine
pdb|3Q0E|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Product Of
S-Allyl-L-Cysteine Sulfoxide
pdb|3Q0E|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Product Of
S-Allyl-L-Cysteine Sulfoxide
pdb|1MB4|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Vibrio Cholerae With Nadp And S-methyl-l-cysteine
Sulfoxide
pdb|1MB4|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Vibrio Cholerae With Nadp And S-methyl-l-cysteine
Sulfoxide
Length = 370
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 66 DFSCYKPPCFCR----VPFSSFLENSSLV-ETFDSESMAFMSKVLTCSGQSEETYLPPAL 120
DF +P F VP +F +++ ++ + FD ES+ + V+TC G S + PAL
Sbjct: 25 DFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKVYPAL 84
Query: 121 Q------YIPPKTNQQESIKEAQMVLFPV 143
+ Y + KEA + L PV
Sbjct: 85 RQAGWKGYWIDAASTLRMDKEAIITLDPV 113
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 367 SGRPVIREIAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAKERVKK----GDR 422
GR ++ ++ LKL AA L +GN S+S+ Y L M K K G+
Sbjct: 321 GGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYGEG 380
Query: 423 V-W--LIGAGTGSKCGSVVLQCL 442
+ W L+G G G +++L L
Sbjct: 381 LEWGVLLGFGPGITVETILLHSL 403
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 52/285 (18%), Positives = 110/285 (38%), Gaps = 49/285 (17%)
Query: 172 PSLSSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQKDSDALVLSTEILSTG 231
P + +I + +K + + GC A + +A+ L + KD+ L++ +E S
Sbjct: 139 PGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVT 198
Query: 232 WYSGNEK--PKLLLNCLFRMGSVAVLLTNKKQAK-RSSKYKVVRTVRTNKAFDDKAYNSG 288
+ +E L+ LF G+ A+++ + + + +++V T + A
Sbjct: 199 FRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQQLVPNSHGAIGGL 258
Query: 289 MREEDSNGKLGVT--LNRDLLQIAGETLRANIT--ILGFKILPFRELFWLGVSVIKKGFI 344
+RE +G+T LN+ + I + + ++ I + +FW+
Sbjct: 259 LRE------VGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIFWIAHP------- 305
Query: 345 KNSCDVYVPNFKAAVQHFCLPVSGRPVIREIAKNLKLGERDIEAALMTLHRFGNQSSSSL 404
GR ++ ++ + + L ++A L +GN SS+ +
Sbjct: 306 ----------------------GGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACV 343
Query: 405 WYELAYM-----EAKERVKKGDRVW--LIGAGTGSKCGSVVLQCL 442
++ + M EA + W L G G G +VVL+ +
Sbjct: 344 FFIMDLMRKKSLEAGLKTTGEGLDWGVLFGFGPGLTIETVVLRSM 388
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 367 SGRPVIREIAKNLKLGERDIEAALMTLHRFGNQSSSSLWYELAYMEAKERVKK----GDR 422
GR ++ ++ LKL AA L +GN S+S+ Y L M K K G+
Sbjct: 321 GGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYGEG 380
Query: 423 V-W--LIGAGTGSKCGSVVLQCL 442
+ W L+G G G +++L L
Sbjct: 381 LEWGVLLGFGPGITVETILLHSL 403
>pdb|2QUF|A Chain A, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
pdb|2QUF|B Chain B, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
Length = 232
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 339 IKKGFIKNSCDVYVPNFKAAVQHFCLPVSGRPVIREIAKNLKLGERDIEAALMTLHRF 396
IK+ ++K D+ + A+ H+ L ++GR + E++ L L ER++ + + RF
Sbjct: 153 IKEAYLKEIGDMT----QLAILHYLL-LNGRATVEELSDRLNLKEREVREKISEMARF 205
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 387 EAALMTLHRFGNQSSSSLWYELAYMEAKE--RVKKGDRVWLIGAGTGSKCGSVVL 439
E + + R+GN S++S+ LA EA + R+++GD V L+ G G + VL
Sbjct: 265 ERVAVNVDRYGNTSTASI--PLALKEAVDAGRIREGDHVLLVSFGAGLTWAAAVL 317
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/301 (18%), Positives = 116/301 (38%), Gaps = 46/301 (15%)
Query: 158 IDILIINCSGFCPSPSLSSIIINKYSMKSDIKNFNLSGMGCSASALAIDMAQALLKTQKD 217
I LI+ C P + + +K F +GC A + +A+ + + K
Sbjct: 120 ITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKG 179
Query: 218 SDALVLSTEILSTGWYSGNEK--PKLLLNCLFRMGSVAVLL-TNKKQAKRSSKYKVVRTV 274
+ L++ +E+ +T + +E ++ + G+ AV++ + +++V T
Sbjct: 180 ARVLIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIFELVSTA 239
Query: 275 RTNKAFDDKAYNSGMREEDSNGKLGVTLNRDLLQIAGETLRANITILGFKILPFRELFWL 334
+T +S+G I G L + ++ +K +P
Sbjct: 240 QTIVP-------------ESHG-----------AIEGHLLESGLSFHLYKTVP------- 268
Query: 335 GVSVIKKGFIKNSCDVYVP-NFKAAVQHFCLPVSGRPVI-REIAKNLKLGERDIEAALMT 392
++I D + P N F + G P I ++ + L + ++
Sbjct: 269 --TLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQV 326
Query: 393 LHRFGNQSSSSLWYELAYMEAKE----RVKKGDRV-W--LIGAGTGSKCGSVVLQCLRPI 445
L +GN SS+++++ + M K + G+ + W L G G G +VVL+ + P+
Sbjct: 327 LKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVETVVLRSV-PV 385
Query: 446 V 446
+
Sbjct: 386 I 386
>pdb|3TKT|A Chain A, Crystal Structure Of Cyp108d1 From Novosphingobium
Aromaticivorans Dsm12444
Length = 450
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 298 LGVTLNR-DLLQIAGETLRANITIL-GFKILPFR 329
L V L+R D L++AGE R N T + GFK LP R
Sbjct: 413 LDVLLDRVDSLELAGEPKRVNSTFVGGFKSLPMR 446
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 153 ISPQDIDILIINCSGFCPSPSLSSIIINKYSMKSDIKN 190
+SP+D+ +I G C P + I +N Y ++ IK+
Sbjct: 175 VSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKD 212
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 153 ISPQDIDILIINCSGFCPSPSLSSIIINKYSMKSDIKN 190
+SP+D+ +I G C P + I +N Y ++ IK+
Sbjct: 175 VSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKD 212
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 153 ISPQDIDILIINCSGFCPSPSLSSIIINKYSMKSDIKN 190
+SP+D+ +I G C P + I +N Y ++ IK+
Sbjct: 173 VSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKD 210
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 191 FNLSGMGCSASALAIDMAQALLKTQKDSDALVLSTEILSTGWYSGNE 237
F + C A+ AI +A+ L T+ + LV++T+ G SG E
Sbjct: 104 FEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGE 150
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 191 FNLSGMGCSASALAIDMAQALLKTQKDSDALVLSTEILSTGWYSGNE 237
F + C A+ AI +A+ L T+ + LV++T+ G SG E
Sbjct: 104 FEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGE 150
>pdb|3D0C|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
pdb|3D0C|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
Length = 314
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 319 TILGFKILPF----RELFWLGVSVIKKGFIKNSCDVYVPN 354
TI G I+PF RE+ W G+ + ++N +V VPN
Sbjct: 14 TISGINIVPFLEGTREIDWKGLDDNVEFLLQNGIEVIVPN 53
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 290 REEDSNGKLGVTLNRDLLQIAGETL 314
RE ++NGK+G T +RDLL I +L
Sbjct: 1290 RELEANGKVGATYSRDLLGITKASL 1314
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 290 REEDSNGKLGVTLNRDLLQIAGETL 314
RE ++NGK+G T +RDLL I +L
Sbjct: 1290 RELEANGKVGATYSRDLLGITKASL 1314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,675,626
Number of Sequences: 62578
Number of extensions: 491693
Number of successful extensions: 1120
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 42
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)