Query 039839
Match_columns 825
No_of_seqs 628 out of 1977
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2203 GTP-binding protein [G 100.0 2E-163 4E-168 1336.2 51.0 730 8-756 5-748 (772)
2 PF05879 RHD3: Root hair defec 100.0 7E-144 1E-148 1284.0 56.9 695 46-762 1-722 (742)
3 COG1126 GlnQ ABC-type polar am 100.0 1.9E-36 4.1E-41 306.8 14.4 180 9-205 2-227 (240)
4 COG1120 FepC ABC-type cobalami 100.0 3.9E-34 8.4E-39 301.5 14.3 197 8-220 1-245 (258)
5 COG1125 OpuBA ABC-type proline 100.0 1.7E-33 3.7E-38 290.5 10.2 189 9-213 1-238 (309)
6 COG1135 AbcC ABC-type metal io 100.0 5.5E-33 1.2E-37 294.2 12.6 184 9-205 1-233 (339)
7 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-32 4.5E-37 281.3 14.6 191 7-213 6-247 (263)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-32 6.9E-37 285.8 14.1 188 8-213 3-237 (254)
9 COG1116 TauB ABC-type nitrate/ 100.0 2.5E-32 5.5E-37 283.6 13.1 172 9-196 3-215 (248)
10 COG3842 PotA ABC-type spermidi 100.0 1E-31 2.2E-36 294.4 14.2 182 8-205 4-228 (352)
11 COG3638 ABC-type phosphate/pho 100.0 9.5E-32 2.1E-36 275.7 12.3 191 8-214 2-247 (258)
12 COG1136 SalX ABC-type antimicr 100.0 3.1E-31 6.7E-36 274.6 15.3 171 9-193 1-221 (226)
13 COG1118 CysA ABC-type sulfate/ 100.0 4.7E-31 1E-35 278.9 11.2 183 8-206 1-230 (345)
14 COG4555 NatA ABC-type Na+ tran 100.0 5.4E-31 1.2E-35 264.0 10.4 179 9-203 1-222 (245)
15 COG3839 MalK ABC-type sugar tr 100.0 1.1E-30 2.3E-35 284.9 13.5 180 9-204 3-224 (338)
16 COG1117 PstB ABC-type phosphat 100.0 1.7E-30 3.7E-35 262.6 12.4 185 8-206 6-240 (253)
17 COG1124 DppF ABC-type dipeptid 100.0 2.8E-30 6E-35 266.5 13.0 184 8-204 2-232 (252)
18 COG1122 CbiO ABC-type cobalt t 100.0 2.7E-30 5.9E-35 271.0 12.8 182 8-204 2-229 (235)
19 PRK13537 nodulation ABC transp 100.0 1.2E-29 2.5E-34 276.7 15.6 180 7-203 5-227 (306)
20 COG2884 FtsE Predicted ATPase 100.0 6.4E-30 1.4E-34 254.4 12.3 173 9-197 1-220 (223)
21 PRK11432 fbpC ferric transport 100.0 1.1E-29 2.4E-34 281.7 15.6 180 9-204 6-227 (351)
22 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-29 2.5E-34 280.5 15.3 183 9-204 1-231 (343)
23 PRK11650 ugpC glycerol-3-phosp 100.0 1.8E-29 3.8E-34 280.6 15.2 180 9-204 3-225 (356)
24 COG1131 CcmA ABC-type multidru 100.0 1.7E-29 3.7E-34 273.8 14.7 177 9-201 4-224 (293)
25 COG0411 LivG ABC-type branched 100.0 3.2E-30 6.9E-35 266.2 8.4 188 8-211 3-247 (250)
26 TIGR03265 PhnT2 putative 2-ami 100.0 2.4E-29 5.3E-34 279.2 15.3 180 9-204 4-225 (353)
27 PRK13536 nodulation factor exp 100.0 4E-29 8.8E-34 276.1 15.6 179 8-203 40-261 (340)
28 PRK09452 potA putrescine/sperm 100.0 5E-29 1.1E-33 278.5 15.2 182 7-204 12-235 (375)
29 PRK11607 potG putrescine trans 100.0 6.3E-29 1.4E-33 277.9 15.5 183 6-204 16-240 (377)
30 PRK10851 sulfate/thiosulfate t 100.0 6.3E-29 1.4E-33 275.9 14.9 181 8-204 1-227 (353)
31 cd03296 ABC_CysA_sulfate_impor 100.0 8.3E-29 1.8E-33 260.0 15.0 180 8-203 1-226 (239)
32 COG4559 ABC-type hemin transpo 100.0 4.7E-29 1E-33 251.8 12.4 193 9-218 1-245 (259)
33 TIGR03258 PhnT 2-aminoethylpho 100.0 1.2E-28 2.6E-33 274.3 15.2 182 7-204 3-229 (362)
34 PRK13647 cbiO cobalt transport 100.0 1.9E-28 4.1E-33 263.1 15.5 176 8-199 3-223 (274)
35 TIGR01288 nodI ATP-binding ABC 100.0 2.2E-28 4.7E-33 266.3 15.4 178 8-202 3-223 (303)
36 PRK13651 cobalt transporter AT 100.0 2E-28 4.3E-33 266.9 14.9 183 9-205 2-256 (305)
37 cd03218 ABC_YhbG The ABC trans 100.0 2.4E-28 5.3E-33 254.8 15.0 177 10-203 1-222 (232)
38 PRK11000 maltose/maltodextrin 100.0 1.9E-28 4.2E-33 273.6 15.0 179 9-203 3-223 (369)
39 cd03261 ABC_Org_Solvent_Resist 100.0 2.4E-28 5.2E-33 255.7 14.5 177 10-202 1-225 (235)
40 cd03259 ABC_Carb_Solutes_like 100.0 3E-28 6.5E-33 251.2 14.8 171 10-196 1-213 (213)
41 PRK13646 cbiO cobalt transport 100.0 2E-28 4.4E-33 264.4 14.1 184 8-204 1-236 (286)
42 PRK13650 cbiO cobalt transport 100.0 2.5E-28 5.4E-33 262.8 14.6 183 8-204 3-230 (279)
43 cd03265 ABC_DrrA DrrA is the A 100.0 3.6E-28 7.7E-33 252.0 15.3 174 10-199 1-217 (220)
44 PRK11153 metN DL-methionine tr 100.0 2.5E-28 5.4E-33 270.2 14.7 182 9-203 1-230 (343)
45 PRK13637 cbiO cobalt transport 100.0 3.1E-28 6.8E-33 263.1 14.8 183 9-204 2-235 (287)
46 PRK13643 cbiO cobalt transport 100.0 3E-28 6.5E-33 263.4 14.4 182 9-204 1-234 (288)
47 PRK09536 btuD corrinoid ABC tr 100.0 2.7E-28 5.9E-33 274.4 14.2 189 9-214 3-239 (402)
48 PRK13634 cbiO cobalt transport 100.0 4.8E-28 1E-32 262.1 14.6 183 9-204 2-236 (290)
49 COG4598 HisP ABC-type histidin 100.0 1.3E-28 2.9E-33 242.6 9.1 182 8-206 5-244 (256)
50 PRK13638 cbiO cobalt transport 100.0 5.5E-28 1.2E-32 258.8 14.6 179 9-204 1-226 (271)
51 PRK13636 cbiO cobalt transport 100.0 6.8E-28 1.5E-32 260.0 15.0 182 8-204 4-232 (283)
52 COG4152 ABC-type uncharacteriz 100.0 1.8E-28 3.9E-33 252.0 9.9 178 8-202 1-218 (300)
53 cd03258 ABC_MetN_methionine_tr 100.0 6.9E-28 1.5E-32 251.8 14.5 181 9-202 1-229 (233)
54 TIGR03522 GldA_ABC_ATP gliding 100.0 7.2E-28 1.6E-32 262.0 15.2 177 8-202 1-220 (301)
55 COG4175 ProV ABC-type proline/ 100.0 2.2E-28 4.9E-33 258.9 10.7 184 9-205 4-256 (386)
56 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.5E-28 2.1E-32 251.6 15.3 177 9-202 1-220 (236)
57 TIGR00960 3a0501s02 Type II (G 99.9 7.6E-28 1.6E-32 248.7 14.0 169 9-192 1-216 (216)
58 PRK11022 dppD dipeptide transp 99.9 1E-27 2.2E-32 263.7 15.8 187 9-204 3-244 (326)
59 PRK15079 oligopeptide ABC tran 99.9 8E-28 1.7E-32 265.0 14.9 185 7-204 6-252 (331)
60 PRK11308 dppF dipeptide transp 99.9 8.7E-28 1.9E-32 264.3 15.2 184 8-204 4-245 (327)
61 PRK13635 cbiO cobalt transport 99.9 1.1E-27 2.4E-32 257.9 15.5 181 8-203 4-229 (279)
62 cd03266 ABC_NatA_sodium_export 99.9 1.3E-27 2.8E-32 247.1 15.4 174 9-196 1-218 (218)
63 cd03219 ABC_Mj1267_LivG_branch 99.9 1.1E-27 2.4E-32 250.6 14.7 176 10-202 1-231 (236)
64 PRK13641 cbiO cobalt transport 99.9 1.1E-27 2.5E-32 258.7 15.2 181 9-203 2-234 (287)
65 PRK13648 cbiO cobalt transport 99.9 2.2E-27 4.7E-32 254.0 16.7 187 1-204 1-232 (269)
66 COG3840 ThiQ ABC-type thiamine 99.9 3.7E-28 8.1E-33 240.2 9.9 179 9-205 1-221 (231)
67 PRK11231 fecE iron-dicitrate t 99.9 1.1E-27 2.4E-32 254.0 14.2 188 8-212 1-236 (255)
68 cd03301 ABC_MalK_N The N-termi 99.9 1.7E-27 3.6E-32 245.4 15.0 171 10-196 1-213 (213)
69 TIGR02315 ABC_phnC phosphonate 99.9 8.4E-28 1.8E-32 252.5 13.0 177 9-201 1-233 (243)
70 PRK10895 lipopolysaccharide AB 99.9 1.3E-27 2.8E-32 251.2 14.3 184 9-209 3-232 (241)
71 PRK11629 lolD lipoprotein tran 99.9 2.7E-27 5.8E-32 247.7 16.5 176 8-197 4-228 (233)
72 PRK11614 livF leucine/isoleuci 99.9 1.4E-27 2.9E-32 250.4 14.3 179 9-204 5-227 (237)
73 PRK13633 cobalt transporter AT 99.9 1.8E-27 4E-32 256.2 15.6 183 8-204 3-234 (280)
74 COG0410 LivF ABC-type branched 99.9 1E-27 2.2E-32 246.0 13.0 185 8-208 2-231 (237)
75 PRK13652 cbiO cobalt transport 99.9 1.7E-27 3.7E-32 256.0 15.4 180 9-203 3-227 (277)
76 COG1137 YhbG ABC-type (unclass 99.9 1E-28 2.2E-33 247.5 5.4 186 9-211 4-236 (243)
77 PRK11248 tauB taurine transpor 99.9 2.2E-27 4.8E-32 252.3 16.0 175 9-199 1-216 (255)
78 cd03293 ABC_NrtD_SsuB_transpor 99.9 2E-27 4.4E-32 246.4 15.1 176 10-198 1-218 (220)
79 PRK13644 cbiO cobalt transport 99.9 1.6E-27 3.5E-32 255.9 14.7 179 9-204 1-225 (274)
80 COG0444 DppD ABC-type dipeptid 99.9 1.5E-27 3.3E-32 255.7 14.3 187 10-205 2-245 (316)
81 cd03269 ABC_putative_ATPase Th 99.9 2.4E-27 5.2E-32 244.0 14.8 169 10-195 1-209 (210)
82 PRK14250 phosphate ABC transpo 99.9 1.8E-27 3.9E-32 250.5 13.7 179 9-203 3-221 (241)
83 PRK10070 glycine betaine trans 99.9 1.8E-27 3.9E-32 267.6 14.6 183 8-203 3-254 (400)
84 PRK13631 cbiO cobalt transport 99.9 2.2E-27 4.8E-32 260.3 14.8 186 7-206 19-268 (320)
85 TIGR03410 urea_trans_UrtE urea 99.9 2.6E-27 5.6E-32 247.0 14.4 176 10-201 1-219 (230)
86 PRK13640 cbiO cobalt transport 99.9 2.7E-27 6E-32 255.1 15.1 182 8-204 4-233 (282)
87 PRK11300 livG leucine/isoleuci 99.9 2E-27 4.4E-32 251.6 13.8 180 8-203 4-243 (255)
88 PRK13548 hmuV hemin importer A 99.9 2.3E-27 4.9E-32 252.4 14.3 179 9-203 2-230 (258)
89 PRK11831 putative ABC transpor 99.9 2.6E-27 5.7E-32 253.4 14.8 179 8-202 6-232 (269)
90 PRK13642 cbiO cobalt transport 99.9 3.9E-27 8.5E-32 253.2 15.9 182 8-203 3-229 (277)
91 PRK10584 putative ABC transpor 99.9 5.3E-27 1.1E-31 244.4 16.4 173 8-194 5-226 (228)
92 PRK09493 glnQ glutamine ABC tr 99.9 3.2E-27 6.9E-32 248.1 14.7 178 9-203 1-225 (240)
93 PRK11264 putative amino-acid A 99.9 3.7E-27 8.1E-32 248.8 15.3 177 9-202 3-232 (250)
94 cd03224 ABC_TM1139_LivF_branch 99.9 2.5E-27 5.5E-32 245.4 13.6 175 10-201 1-219 (222)
95 PRK10619 histidine/lysine/argi 99.9 4.1E-27 8.8E-32 250.0 15.4 177 9-202 5-240 (257)
96 TIGR01186 proV glycine betaine 99.9 1.4E-27 3.1E-32 265.4 12.3 172 17-204 1-220 (363)
97 PRK10744 pstB phosphate transp 99.9 3.2E-27 7E-32 251.3 14.4 189 1-203 4-244 (260)
98 PRK15093 antimicrobial peptide 99.9 3.6E-27 7.9E-32 259.7 15.3 186 9-203 3-248 (330)
99 cd03268 ABC_BcrA_bacitracin_re 99.9 4.1E-27 8.9E-32 241.8 14.6 170 10-196 1-208 (208)
100 TIGR03411 urea_trans_UrtD urea 99.9 3.5E-27 7.5E-32 247.9 14.2 177 9-203 2-231 (242)
101 PRK10253 iron-enterobactin tra 99.9 2.8E-27 6E-32 252.6 13.6 194 3-212 1-242 (265)
102 cd03257 ABC_NikE_OppD_transpor 99.9 5.1E-27 1.1E-31 243.9 15.1 175 9-196 1-228 (228)
103 COG4525 TauB ABC-type taurine 99.9 3E-27 6.6E-32 235.9 12.7 177 9-199 3-220 (259)
104 TIGR02673 FtsE cell division A 99.9 4.5E-27 9.7E-32 242.4 14.5 167 9-191 1-214 (214)
105 PRK13649 cbiO cobalt transport 99.9 4.4E-27 9.5E-32 252.9 15.0 182 8-203 1-234 (280)
106 PRK11124 artP arginine transpo 99.9 5.6E-27 1.2E-31 246.5 15.5 176 8-200 1-227 (242)
107 COG4604 CeuD ABC-type enteroch 99.9 3.7E-28 8.1E-33 242.8 6.1 191 9-216 1-238 (252)
108 PRK13639 cbiO cobalt transport 99.9 4.3E-27 9.2E-32 252.7 14.7 180 9-204 1-227 (275)
109 PRK13632 cbiO cobalt transport 99.9 6.5E-27 1.4E-31 250.6 16.1 183 7-204 5-232 (271)
110 cd03256 ABC_PhnC_transporter A 99.9 3.1E-27 6.7E-32 247.7 13.3 177 10-201 1-232 (241)
111 PRK09473 oppD oligopeptide tra 99.9 4E-27 8.7E-32 259.4 14.8 187 8-204 11-252 (330)
112 cd03260 ABC_PstB_phosphate_tra 99.9 5.3E-27 1.2E-31 244.2 15.0 177 10-200 1-226 (227)
113 cd03263 ABC_subfamily_A The AB 99.9 6.5E-27 1.4E-31 242.2 15.1 175 10-200 1-218 (220)
114 PRK11701 phnK phosphonate C-P 99.9 7.6E-27 1.6E-31 248.1 15.8 179 8-202 5-240 (258)
115 PRK11247 ssuB aliphatic sulfon 99.9 4.6E-27 1E-31 250.3 14.2 177 7-199 10-219 (257)
116 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 4.7E-27 1E-31 242.9 13.7 169 10-192 1-218 (218)
117 PRK14273 phosphate ABC transpo 99.9 8.2E-27 1.8E-31 247.1 15.7 187 3-203 1-238 (254)
118 PRK14242 phosphate transporter 99.9 7.5E-27 1.6E-31 247.1 15.4 182 8-203 5-237 (253)
119 TIGR01188 drrA daunorubicin re 99.9 3.2E-27 6.9E-32 257.0 12.8 169 17-202 1-212 (302)
120 COG4181 Predicted ABC-type tra 99.9 2.5E-27 5.4E-32 232.2 10.7 173 9-195 6-227 (228)
121 PRK13645 cbiO cobalt transport 99.9 5.7E-27 1.2E-31 253.3 14.5 182 9-203 6-240 (289)
122 PRK15112 antimicrobial peptide 99.9 5.7E-27 1.2E-31 250.6 14.3 182 8-202 3-238 (267)
123 cd03226 ABC_cobalt_CbiO_domain 99.9 4.2E-27 9.1E-32 241.4 12.4 166 12-193 2-205 (205)
124 TIGR03740 galliderm_ABC gallid 99.9 9.4E-27 2E-31 241.9 15.1 173 10-199 1-209 (223)
125 TIGR02211 LolD_lipo_ex lipopro 99.9 1.1E-26 2.3E-31 240.8 15.3 171 9-193 1-220 (221)
126 TIGR02769 nickel_nikE nickel i 99.9 9.2E-27 2E-31 248.6 15.2 181 9-202 2-239 (265)
127 cd03295 ABC_OpuCA_Osmoprotecti 99.9 8.8E-27 1.9E-31 245.2 14.5 177 10-201 1-223 (242)
128 PRK09544 znuC high-affinity zi 99.9 7.7E-27 1.7E-31 247.8 13.8 189 8-213 3-219 (251)
129 PRK10575 iron-hydroxamate tran 99.9 8E-27 1.7E-31 249.1 13.9 190 7-212 9-246 (265)
130 cd03292 ABC_FtsE_transporter F 99.9 9.7E-27 2.1E-31 239.7 13.8 167 10-192 1-214 (214)
131 TIGR03005 ectoine_ehuA ectoine 99.9 1.1E-26 2.3E-31 245.9 14.5 178 10-203 1-236 (252)
132 PRK10908 cell division protein 99.9 1.3E-26 2.8E-31 240.6 14.9 169 9-194 1-217 (222)
133 PRK10771 thiQ thiamine transpo 99.9 8.3E-27 1.8E-31 243.8 13.5 181 9-207 1-223 (232)
134 PRK09984 phosphonate/organopho 99.9 9.4E-27 2E-31 247.9 14.1 181 8-201 3-240 (262)
135 cd03264 ABC_drug_resistance_li 99.9 1.4E-26 3E-31 238.5 14.8 168 10-196 1-211 (211)
136 TIGR03873 F420-0_ABC_ATP propo 99.9 8.3E-27 1.8E-31 247.5 13.5 186 10-212 2-235 (256)
137 PRK14268 phosphate ABC transpo 99.9 1.5E-26 3.4E-31 245.8 15.5 183 7-203 10-242 (258)
138 TIGR00972 3a0107s01c2 phosphat 99.9 1.7E-26 3.6E-31 243.8 14.8 181 9-203 1-232 (247)
139 TIGR03415 ABC_choXWV_ATP choli 99.9 1.4E-26 3.1E-31 258.8 14.7 166 25-203 37-254 (382)
140 COG1123 ATPase components of v 99.9 1.4E-26 3E-31 264.0 14.8 189 8-205 4-246 (539)
141 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.4E-26 3.1E-31 238.3 13.6 169 10-196 1-211 (211)
142 cd03225 ABC_cobalt_CbiO_domain 99.9 1.4E-26 3.1E-31 238.2 13.0 166 11-191 1-211 (211)
143 cd03294 ABC_Pro_Gly_Bertaine T 99.9 8.5E-27 1.8E-31 249.6 11.8 176 11-202 26-249 (269)
144 cd03235 ABC_Metallic_Cations A 99.9 1.3E-26 2.7E-31 239.1 12.4 167 11-195 1-212 (213)
145 PRK14274 phosphate ABC transpo 99.9 2.8E-26 6E-31 243.9 15.3 182 8-203 11-243 (259)
146 PRK14270 phosphate ABC transpo 99.9 2.6E-26 5.7E-31 242.8 14.9 183 8-204 3-236 (251)
147 PRK14269 phosphate ABC transpo 99.9 2.8E-26 6.1E-31 242.1 14.7 180 8-202 1-229 (246)
148 PRK14237 phosphate transporter 99.9 3.6E-26 7.9E-31 244.4 15.7 187 3-203 14-251 (267)
149 PRK10762 D-ribose transporter 99.9 2.2E-26 4.7E-31 266.7 15.0 177 8-201 3-228 (501)
150 PRK10261 glutathione transport 99.9 1.7E-26 3.8E-31 274.0 14.5 188 7-203 10-258 (623)
151 PRK10247 putative ABC transpor 99.9 2.7E-26 5.9E-31 239.2 14.2 178 3-197 1-221 (225)
152 cd03262 ABC_HisP_GlnQ_permease 99.9 2.7E-26 5.8E-31 236.3 13.9 166 10-192 1-213 (213)
153 PRK14258 phosphate ABC transpo 99.9 3.1E-26 6.8E-31 244.0 14.8 188 4-204 2-246 (261)
154 TIGR01978 sufC FeS assembly AT 99.9 3.4E-26 7.3E-31 240.2 14.8 176 10-200 1-231 (243)
155 PRK14267 phosphate ABC transpo 99.9 4.2E-26 9E-31 241.4 15.3 182 8-203 3-237 (253)
156 PRK13549 xylose transporter AT 99.9 1.8E-26 4E-31 267.6 13.6 179 8-201 4-230 (506)
157 COG1123 ATPase components of v 99.9 2E-26 4.4E-31 262.6 13.6 185 7-204 278-520 (539)
158 PRK14247 phosphate ABC transpo 99.9 4.9E-26 1.1E-30 240.4 15.7 181 9-203 3-234 (250)
159 cd03216 ABC_Carb_Monos_I This 99.9 2.8E-26 6E-31 228.0 12.8 159 10-194 1-162 (163)
160 PRK09700 D-allose transporter 99.9 1.7E-26 3.8E-31 268.0 13.3 178 8-202 4-233 (510)
161 PRK14256 phosphate ABC transpo 99.9 4.4E-26 9.6E-31 241.2 15.1 182 9-204 4-237 (252)
162 PRK15439 autoinducer 2 ABC tra 99.9 1.4E-26 3E-31 269.0 12.2 179 7-202 9-228 (510)
163 PRK11144 modC molybdate transp 99.9 2.3E-26 5E-31 255.4 13.3 179 9-206 1-221 (352)
164 PRK14249 phosphate ABC transpo 99.9 4.6E-26 1E-30 240.9 14.9 183 8-204 3-236 (251)
165 PRK14239 phosphate transporter 99.9 5.1E-26 1.1E-30 240.4 15.2 182 8-204 4-237 (252)
166 TIGR02323 CP_lyasePhnK phospho 99.9 5.7E-26 1.2E-30 240.4 15.0 179 8-202 2-237 (253)
167 PRK14241 phosphate transporter 99.9 5.8E-26 1.3E-30 241.3 14.9 182 8-203 3-242 (258)
168 TIGR00968 3a0106s01 sulfate AB 99.9 5.7E-26 1.2E-30 238.6 14.7 178 10-203 1-220 (237)
169 PRK14245 phosphate ABC transpo 99.9 5.7E-26 1.2E-30 240.1 14.7 182 8-204 2-235 (250)
170 PRK14235 phosphate transporter 99.9 6.9E-26 1.5E-30 242.2 15.4 181 8-202 18-250 (267)
171 PRK10261 glutathione transport 99.9 4.5E-26 9.7E-31 270.5 15.4 183 8-203 312-553 (623)
172 PRK14251 phosphate ABC transpo 99.9 8E-26 1.7E-30 239.0 15.7 181 8-202 3-234 (251)
173 TIGR03269 met_CoM_red_A2 methy 99.9 4.4E-26 9.5E-31 265.2 15.0 178 10-201 1-256 (520)
174 cd03215 ABC_Carb_Monos_II This 99.9 3.7E-26 8.1E-31 230.7 12.5 152 8-192 3-182 (182)
175 PRK14248 phosphate ABC transpo 99.9 7.6E-26 1.6E-30 241.8 15.2 183 7-203 19-252 (268)
176 cd03246 ABCC_Protease_Secretio 99.9 4.1E-26 8.8E-31 228.6 12.2 155 10-192 1-173 (173)
177 PRK10418 nikD nickel transport 99.9 8.3E-26 1.8E-30 239.7 15.0 181 9-202 4-229 (254)
178 PRK14259 phosphate ABC transpo 99.9 7.4E-26 1.6E-30 242.3 14.7 182 8-203 12-253 (269)
179 TIGR01277 thiQ thiamine ABC tr 99.9 8.6E-26 1.9E-30 233.2 14.7 170 10-197 1-212 (213)
180 cd03300 ABC_PotA_N PotA is an 99.9 7.7E-26 1.7E-30 236.7 14.4 177 10-202 1-219 (232)
181 PRK14240 phosphate transporter 99.9 9.6E-26 2.1E-30 238.2 15.0 181 9-203 3-234 (250)
182 cd03267 ABC_NatA_like Similar 99.9 7.4E-26 1.6E-30 237.7 13.7 159 25-196 34-236 (236)
183 COG1129 MglA ABC-type sugar tr 99.9 4.7E-26 1E-30 258.1 13.1 178 7-201 6-233 (500)
184 PRK13547 hmuV hemin importer A 99.9 5E-26 1.1E-30 244.4 12.6 192 9-212 1-253 (272)
185 PRK15056 manganese/iron transp 99.9 7.3E-26 1.6E-30 242.7 13.8 187 8-211 5-238 (272)
186 PRK14253 phosphate ABC transpo 99.9 1E-25 2.2E-30 237.9 14.5 180 9-202 3-232 (249)
187 PRK10938 putative molybdenum t 99.9 6.9E-26 1.5E-30 261.7 14.2 178 9-203 3-224 (490)
188 PRK14272 phosphate ABC transpo 99.9 1.5E-25 3.3E-30 236.8 15.6 181 9-203 4-236 (252)
189 PRK10419 nikE nickel transport 99.9 1.3E-25 2.9E-30 240.3 15.1 181 9-202 3-240 (268)
190 cd03230 ABC_DR_subfamily_A Thi 99.9 8.6E-26 1.9E-30 226.2 12.4 156 10-192 1-173 (173)
191 cd03247 ABCC_cytochrome_bd The 99.9 1.3E-25 2.7E-30 225.9 13.6 161 10-196 1-178 (178)
192 cd03213 ABCG_EPDR ABCG transpo 99.9 2E-25 4.3E-30 227.9 15.2 166 9-195 3-193 (194)
193 PRK14262 phosphate ABC transpo 99.9 1.7E-25 3.7E-30 236.3 15.1 180 9-202 3-233 (250)
194 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.9E-26 1.1E-30 237.3 10.9 170 10-196 23-224 (224)
195 PRK14261 phosphate ABC transpo 99.9 2E-25 4.4E-30 236.3 15.7 181 8-202 5-236 (253)
196 PRK15134 microcin C ABC transp 99.9 1.1E-25 2.5E-30 262.3 15.0 186 8-202 4-245 (529)
197 cd03299 ABC_ModC_like Archeal 99.9 1.6E-25 3.5E-30 234.9 14.5 176 10-202 1-218 (235)
198 cd03251 ABCC_MsbA MsbA is an e 99.9 6.1E-26 1.3E-30 237.1 11.3 176 10-202 1-224 (234)
199 COG4161 ArtP ABC-type arginine 99.9 9E-26 2E-30 219.3 11.5 174 9-199 2-226 (242)
200 PRK14238 phosphate transporter 99.9 2.1E-25 4.5E-30 239.1 15.6 183 7-203 22-255 (271)
201 TIGR02142 modC_ABC molybdenum 99.9 1.3E-25 2.9E-30 249.5 14.4 174 14-205 4-223 (354)
202 PRK14236 phosphate transporter 99.9 2.4E-25 5.3E-30 238.6 15.6 183 7-203 23-256 (272)
203 PRK13543 cytochrome c biogenes 99.9 3.3E-25 7.2E-30 229.3 15.9 166 6-188 8-211 (214)
204 cd03252 ABCC_Hemolysin The ABC 99.9 1.4E-25 3E-30 235.0 13.1 177 10-203 1-225 (237)
205 PRK14265 phosphate ABC transpo 99.9 2.2E-25 4.7E-30 239.4 14.8 184 7-204 18-259 (274)
206 cd03232 ABC_PDR_domain2 The pl 99.9 2.8E-25 6.1E-30 226.2 14.9 167 9-196 3-192 (192)
207 PRK14255 phosphate ABC transpo 99.9 3.4E-25 7.3E-30 234.4 16.0 183 8-204 4-237 (252)
208 cd03297 ABC_ModC_molybdenum_tr 99.9 1.9E-25 4.2E-30 230.6 13.8 166 10-196 2-214 (214)
209 PRK14243 phosphate transporter 99.9 2.3E-25 4.9E-30 237.9 14.7 183 7-203 8-248 (264)
210 cd03214 ABC_Iron-Siderophores_ 99.9 9E-26 2E-30 227.5 10.6 168 11-195 1-179 (180)
211 CHL00131 ycf16 sulfate ABC tra 99.9 4.8E-25 1E-29 233.0 16.6 182 3-199 1-237 (252)
212 PRK14257 phosphate ABC transpo 99.9 3E-25 6.5E-30 244.4 15.5 187 8-206 79-316 (329)
213 PRK14275 phosphate ABC transpo 99.9 3.3E-25 7.1E-30 239.5 15.2 182 7-203 37-270 (286)
214 cd03223 ABCD_peroxisomal_ALDP 99.9 2.5E-25 5.4E-30 221.9 13.0 153 10-192 1-165 (166)
215 PRK15134 microcin C ABC transp 99.9 1.6E-25 3.4E-30 261.1 13.4 182 8-203 274-515 (529)
216 cd03229 ABC_Class3 This class 99.9 1.7E-25 3.8E-30 225.0 11.8 158 10-191 1-178 (178)
217 COG4608 AppF ABC-type oligopep 99.9 2E-25 4.4E-30 234.9 12.6 178 8-204 3-200 (268)
218 PRK14254 phosphate ABC transpo 99.9 4.4E-25 9.5E-30 238.5 15.2 181 8-202 38-268 (285)
219 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.5E-25 3.3E-30 234.8 11.1 176 10-201 1-224 (238)
220 TIGR02633 xylG D-xylose ABC tr 99.9 2.9E-25 6.2E-30 257.2 14.5 177 9-200 1-227 (500)
221 cd03233 ABC_PDR_domain1 The pl 99.9 5E-25 1.1E-29 226.3 14.4 175 9-196 3-202 (202)
222 cd03217 ABC_FeS_Assembly ABC-t 99.9 4E-25 8.6E-30 226.6 13.6 168 10-197 1-188 (200)
223 PRK14271 phosphate ABC transpo 99.9 5.4E-25 1.2E-29 236.7 15.2 183 7-203 19-251 (276)
224 PRK11288 araG L-arabinose tran 99.9 4.6E-25 9.9E-30 255.7 15.0 173 8-197 3-223 (501)
225 cd03254 ABCC_Glucan_exporter_l 99.9 7.5E-25 1.6E-29 228.2 14.9 175 9-201 2-224 (229)
226 PRK14244 phosphate ABC transpo 99.9 7.1E-25 1.5E-29 231.9 14.9 180 10-203 6-237 (251)
227 cd03245 ABCC_bacteriocin_expor 99.9 8.5E-25 1.9E-29 226.4 15.2 169 10-195 3-219 (220)
228 PRK13545 tagH teichoic acids e 99.9 4.1E-25 8.8E-30 252.8 14.0 181 8-202 20-231 (549)
229 COG3845 ABC-type uncharacteriz 99.9 3.5E-25 7.6E-30 246.8 12.8 174 8-198 3-224 (501)
230 TIGR03269 met_CoM_red_A2 methy 99.9 5E-25 1.1E-29 256.4 14.6 181 8-201 278-515 (520)
231 cd03228 ABCC_MRP_Like The MRP 99.9 5.2E-25 1.1E-29 220.2 12.6 153 10-191 1-171 (171)
232 TIGR02982 heterocyst_DevA ABC 99.9 8.5E-25 1.8E-29 226.9 14.7 169 10-192 2-219 (220)
233 PRK14263 phosphate ABC transpo 99.9 9.6E-25 2.1E-29 232.9 15.5 185 5-203 4-245 (261)
234 PRK13546 teichoic acids export 99.9 5.6E-25 1.2E-29 235.3 13.6 181 8-202 3-231 (264)
235 PRK13549 xylose transporter AT 99.9 4.7E-25 1E-29 255.9 13.7 181 8-201 258-492 (506)
236 PRK14246 phosphate ABC transpo 99.9 8.8E-25 1.9E-29 232.6 14.6 183 7-203 8-241 (257)
237 PRK14260 phosphate ABC transpo 99.9 1E-24 2.2E-29 232.1 15.0 180 9-203 7-243 (259)
238 TIGR03608 L_ocin_972_ABC putat 99.9 5.7E-25 1.2E-29 225.3 12.6 158 12-187 1-206 (206)
239 PRK14252 phosphate ABC transpo 99.9 1.1E-24 2.3E-29 232.6 15.0 181 8-202 15-248 (265)
240 TIGR01184 ntrCD nitrate transp 99.9 6E-25 1.3E-29 230.0 12.7 161 28-201 1-202 (230)
241 COG2274 SunT ABC-type bacterio 99.9 4.7E-25 1E-29 262.3 13.4 179 9-204 471-697 (709)
242 cd03234 ABCG_White The White s 99.9 1.5E-24 3.2E-29 226.1 15.3 177 9-196 3-226 (226)
243 PRK09580 sufC cysteine desulfu 99.9 9.7E-25 2.1E-29 230.0 13.9 176 9-199 1-231 (248)
244 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.2E-24 4.7E-29 221.7 15.9 170 8-197 5-206 (207)
245 PRK13539 cytochrome c biogenes 99.9 2.1E-24 4.5E-29 222.3 15.5 162 8-188 1-199 (207)
246 cd03244 ABCC_MRP_domain2 Domai 99.9 2.2E-24 4.7E-29 223.5 15.4 171 10-197 3-220 (221)
247 PRK13538 cytochrome c biogenes 99.9 2.3E-24 4.9E-29 221.4 15.4 162 9-187 1-202 (204)
248 TIGR02770 nickel_nikD nickel i 99.9 8.9E-25 1.9E-29 228.4 12.5 167 27-202 1-214 (230)
249 PRK10982 galactose/methyl gala 99.9 6.4E-25 1.4E-29 253.8 12.5 173 12-201 1-221 (491)
250 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1E-24 2.2E-29 212.8 11.8 137 10-191 1-144 (144)
251 PRK14266 phosphate ABC transpo 99.9 2.4E-24 5.2E-29 227.6 15.6 182 8-203 2-234 (250)
252 PRK03695 vitamin B12-transport 99.9 6.4E-25 1.4E-29 232.4 10.8 180 11-213 2-232 (248)
253 cd03253 ABCC_ATM1_transporter 99.9 1.9E-24 4.1E-29 226.1 14.1 174 10-201 1-222 (236)
254 TIGR01257 rim_protein retinal- 99.9 1.6E-24 3.6E-29 277.9 15.4 179 8-201 1936-2157(2272)
255 PRK15064 ABC transporter ATP-b 99.9 2E-24 4.3E-29 252.0 14.5 173 9-201 1-240 (530)
256 TIGR02633 xylG D-xylose ABC tr 99.9 1.4E-24 3E-29 251.4 12.9 179 8-199 256-488 (500)
257 cd03289 ABCC_CFTR2 The CFTR su 99.9 3.2E-24 6.9E-29 230.8 14.7 177 9-203 2-225 (275)
258 PRK11819 putative ABC transpor 99.9 2.6E-24 5.5E-29 252.5 14.9 173 8-200 5-247 (556)
259 PRK11176 lipid transporter ATP 99.9 2.2E-24 4.7E-29 254.0 14.1 179 9-204 341-568 (582)
260 cd03248 ABCC_TAP TAP, the Tran 99.9 2.4E-24 5.2E-29 224.1 12.6 170 7-192 9-226 (226)
261 PRK09700 D-allose transporter 99.9 2.2E-24 4.7E-29 250.5 13.2 174 8-200 264-495 (510)
262 cd03231 ABC_CcmA_heme_exporter 99.9 4.6E-24 9.9E-29 218.8 13.7 161 10-187 1-198 (201)
263 TIGR01189 ccmA heme ABC export 99.9 6.3E-24 1.4E-28 217.0 14.7 158 10-186 1-197 (198)
264 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.4E-24 5.3E-29 258.4 13.6 176 9-203 451-673 (686)
265 COG4988 CydD ABC-type transpor 99.9 2.2E-24 4.8E-29 245.3 12.2 179 10-206 321-546 (559)
266 TIGR02324 CP_lyasePhnL phospho 99.9 4.6E-24 9.9E-29 221.7 13.6 165 9-187 1-222 (224)
267 PRK14264 phosphate ABC transpo 99.9 5.6E-24 1.2E-28 232.0 14.5 182 8-203 44-289 (305)
268 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.3E-24 7.1E-29 258.2 14.0 176 9-203 477-700 (710)
269 cd03288 ABCC_SUR2 The SUR doma 99.9 9.1E-24 2E-28 224.6 15.5 178 8-202 18-242 (257)
270 cd03250 ABCC_MRP_domain1 Domai 99.9 4.4E-24 9.5E-29 219.0 12.5 167 10-191 1-204 (204)
271 PRK10790 putative multidrug tr 99.9 5.3E-24 1.2E-28 251.4 14.7 177 9-203 340-563 (592)
272 cd03222 ABC_RNaseL_inhibitor T 99.9 4.5E-24 9.7E-29 215.5 11.7 142 13-193 4-151 (177)
273 PRK11174 cysteine/glutathione 99.9 4.7E-24 1E-28 251.6 13.7 177 9-204 349-573 (588)
274 COG4987 CydC ABC-type transpor 99.9 4.3E-24 9.3E-29 239.8 12.6 178 9-203 336-561 (573)
275 KOG0055 Multidrug/pheromone ex 99.9 5.7E-24 1.2E-28 257.9 13.8 181 9-205 350-578 (1228)
276 COG1134 TagH ABC-type polysacc 99.9 8.7E-24 1.9E-28 218.9 13.1 181 8-202 2-235 (249)
277 TIGR01257 rim_protein retinal- 99.9 7.3E-24 1.6E-28 272.0 15.4 178 8-201 927-1147(2272)
278 PRK15064 ABC transporter ATP-b 99.9 5.6E-24 1.2E-28 248.2 13.1 174 8-201 318-523 (530)
279 TIGR03375 type_I_sec_LssB type 99.9 6.2E-24 1.3E-28 255.3 13.8 177 9-202 463-687 (694)
280 COG1119 ModF ABC-type molybden 99.9 1.1E-23 2.3E-28 218.1 13.5 179 7-197 29-256 (257)
281 TIGR01193 bacteriocin_ABC ABC- 99.9 6.6E-24 1.4E-28 255.6 14.0 176 9-203 473-697 (708)
282 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.1E-23 2.5E-28 246.8 14.4 174 8-201 3-246 (552)
283 KOG0057 Mitochondrial Fe/S clu 99.9 2.1E-23 4.5E-28 234.5 15.7 176 9-203 351-574 (591)
284 PRK13540 cytochrome c biogenes 99.9 1.7E-23 3.7E-28 214.2 13.6 158 9-184 1-196 (200)
285 TIGR00958 3a01208 Conjugate Tr 99.9 9.4E-24 2E-28 254.3 13.3 178 9-204 478-703 (711)
286 PRK10762 D-ribose transporter 99.9 9.1E-24 2E-28 244.9 12.6 172 8-201 256-482 (501)
287 KOG0058 Peptide exporter, ABC 99.9 1.3E-23 2.8E-28 243.2 13.4 181 9-205 465-693 (716)
288 TIGR03771 anch_rpt_ABC anchore 99.9 1.1E-23 2.4E-28 219.4 11.7 161 38-211 4-209 (223)
289 PRK11160 cysteine/glutathione 99.9 2.3E-23 5E-28 245.3 15.0 179 9-204 338-563 (574)
290 PRK15177 Vi polysaccharide exp 99.9 1.6E-23 3.5E-28 217.0 12.1 160 27-201 2-190 (213)
291 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-23 2.5E-28 244.6 12.0 173 8-202 267-491 (510)
292 PRK10938 putative molybdenum t 99.9 2.4E-23 5.3E-28 240.6 14.6 174 8-196 259-485 (490)
293 PRK13657 cyclic beta-1,2-gluca 99.9 2.2E-23 4.8E-28 246.0 14.4 176 9-202 334-557 (588)
294 TIGR01842 type_I_sec_PrtD type 99.9 2.7E-23 5.8E-28 243.2 14.7 177 9-201 316-540 (544)
295 COG4172 ABC-type uncharacteriz 99.9 1.3E-23 2.8E-28 228.4 11.1 189 8-205 5-249 (534)
296 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.6E-23 5.7E-28 224.4 13.5 174 8-202 38-246 (282)
297 TIGR01166 cbiO cobalt transpor 99.9 2.6E-23 5.6E-28 210.9 12.6 138 25-175 5-189 (190)
298 PRK10636 putative ABC transpor 99.9 2.7E-23 5.9E-28 247.3 14.3 171 8-198 311-512 (638)
299 PRK11288 araG L-arabinose tran 99.9 2.2E-23 4.7E-28 241.7 13.0 172 9-201 257-483 (501)
300 PRK10982 galactose/methyl gala 99.9 2.3E-23 4.9E-28 241.0 12.9 173 8-199 249-476 (491)
301 TIGR02203 MsbA_lipidA lipid A 99.9 3.1E-23 6.7E-28 243.5 14.1 178 9-203 330-556 (571)
302 cd03290 ABCC_SUR1_N The SUR do 99.9 4.6E-23 1E-27 213.5 13.6 164 11-191 2-218 (218)
303 PRK10535 macrolide transporter 99.9 1E-22 2.2E-27 243.0 18.3 180 8-202 3-231 (648)
304 TIGR02204 MsbA_rel ABC transpo 99.9 3.3E-23 7.2E-28 243.6 14.0 178 9-202 337-562 (576)
305 COG1132 MdlB ABC-type multidru 99.9 3E-23 6.5E-28 243.9 13.4 178 9-204 328-553 (567)
306 COG4148 ModC ABC-type molybdat 99.9 1.6E-23 3.4E-28 219.1 9.7 170 26-208 12-223 (352)
307 COG4586 ABC-type uncharacteriz 99.9 3E-23 6.6E-28 216.6 11.1 180 9-202 3-245 (325)
308 COG4172 ABC-type uncharacteriz 99.9 3.7E-23 8.1E-28 224.8 11.9 190 7-206 274-519 (534)
309 TIGR01192 chvA glucan exporter 99.9 6.1E-23 1.3E-27 242.2 14.8 177 9-203 334-558 (585)
310 TIGR01846 type_I_sec_HlyB type 99.9 5.6E-23 1.2E-27 247.0 14.7 178 9-203 455-680 (694)
311 PRK13409 putative ATPase RIL; 99.9 5.3E-23 1.1E-27 242.4 13.7 172 8-197 339-536 (590)
312 PRK13541 cytochrome c biogenes 99.9 1.1E-22 2.4E-27 207.5 14.2 157 9-184 1-192 (195)
313 PRK10789 putative multidrug tr 99.9 8E-23 1.7E-27 240.5 15.1 178 9-203 313-538 (569)
314 PLN03211 ABC transporter G-25; 99.9 6.1E-23 1.3E-27 244.6 14.1 199 12-232 71-318 (659)
315 PRK11147 ABC transporter ATPas 99.9 9.1E-23 2E-27 242.9 15.1 172 9-200 3-240 (635)
316 TIGR01187 potA spermidine/putr 99.9 3.4E-23 7.4E-28 227.8 10.6 149 45-204 1-191 (325)
317 PRK10636 putative ABC transpor 99.9 1.1E-22 2.3E-27 242.2 15.4 171 9-199 1-232 (638)
318 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.3E-23 1.6E-27 240.0 13.5 166 8-193 321-520 (552)
319 PRK11819 putative ABC transpor 99.9 7.3E-23 1.6E-27 240.2 13.2 166 8-193 323-522 (556)
320 PRK11147 ABC transporter ATPas 99.9 1.1E-22 2.3E-27 242.3 14.4 168 8-195 318-519 (635)
321 COG4107 PhnK ABC-type phosphon 99.9 1E-22 2.2E-27 200.2 10.7 182 7-204 4-242 (258)
322 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.4E-22 3E-27 214.8 12.2 142 38-190 23-192 (246)
323 PRK10522 multidrug transporter 99.9 2.6E-22 5.6E-27 235.1 15.5 171 9-195 322-530 (547)
324 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.5E-22 3.2E-27 199.4 11.3 151 12-191 2-157 (157)
325 PLN03073 ABC transporter F fam 99.9 2.7E-22 5.9E-27 240.6 15.3 171 8-197 507-708 (718)
326 cd03236 ABC_RNaseL_inhibitor_d 99.9 3.1E-22 6.8E-27 213.1 11.9 166 13-196 4-220 (255)
327 PLN03232 ABC transporter C fam 99.9 2.8E-22 6.1E-27 257.5 13.6 179 9-204 1234-1459(1495)
328 PLN03130 ABC transporter C fam 99.9 3.1E-22 6.8E-27 257.8 13.9 179 9-204 1237-1462(1622)
329 COG4674 Uncharacterized ABC-ty 99.9 1.7E-22 3.8E-27 202.1 8.7 186 8-211 4-243 (249)
330 PTZ00265 multidrug resistance 99.9 2.9E-22 6.3E-27 256.0 12.9 185 9-203 1165-1452(1466)
331 COG4167 SapF ABC-type antimicr 99.9 3.6E-22 7.8E-27 197.7 10.3 185 8-205 3-241 (267)
332 TIGR01194 cyc_pep_trnsptr cycl 99.9 6.4E-22 1.4E-26 232.3 13.5 172 9-195 337-551 (555)
333 TIGR00956 3a01205 Pleiotropic 99.9 1.5E-21 3.3E-26 248.9 18.0 212 9-233 759-1021(1394)
334 PTZ00265 multidrug resistance 99.9 5.9E-22 1.3E-26 253.1 13.9 168 9-190 382-655 (1466)
335 COG1101 PhnK ABC-type uncharac 99.9 7E-22 1.5E-26 200.5 11.4 179 9-200 1-235 (263)
336 COG4619 ABC-type uncharacteriz 99.9 1.2E-22 2.6E-27 198.9 5.4 168 9-192 3-212 (223)
337 cd03238 ABC_UvrA The excision 99.9 8.7E-22 1.9E-26 198.7 11.3 148 25-193 8-167 (176)
338 TIGR00957 MRP_assoc_pro multi 99.9 1.5E-21 3.3E-26 251.2 15.3 179 9-204 1284-1509(1522)
339 PTZ00243 ABC transporter; Prov 99.9 2.1E-21 4.5E-26 249.8 15.4 178 9-203 1308-1533(1560)
340 TIGR02857 CydD thiol reductant 99.9 1.4E-21 3E-26 227.8 12.2 162 9-187 320-529 (529)
341 KOG0055 Multidrug/pheromone ex 99.9 2.5E-21 5.4E-26 235.2 14.0 177 9-203 987-1213(1228)
342 COG0488 Uup ATPase components 99.9 3.2E-21 7E-26 223.2 14.1 166 9-194 3-230 (530)
343 TIGR01271 CFTR_protein cystic 99.8 3.7E-21 8.1E-26 247.0 14.6 177 9-203 1217-1440(1490)
344 PLN03232 ABC transporter C fam 99.8 4.2E-21 9.1E-26 246.8 14.6 179 9-203 614-828 (1495)
345 TIGR02868 CydC thiol reductant 99.8 3.9E-21 8.4E-26 224.1 12.8 149 9-173 334-529 (529)
346 COG0396 sufC Cysteine desulfur 99.8 9.3E-21 2E-25 194.4 13.8 178 8-198 2-229 (251)
347 PLN03130 ABC transporter C fam 99.8 3.8E-21 8.3E-26 247.8 13.7 179 9-203 614-828 (1622)
348 PLN03140 ABC transporter G fam 99.8 1.7E-20 3.7E-25 239.2 18.6 209 9-232 867-1138(1470)
349 TIGR00954 3a01203 Peroxysomal 99.8 7.5E-21 1.6E-25 227.3 13.4 161 9-189 451-653 (659)
350 TIGR00957 MRP_assoc_pro multi 99.8 8.6E-21 1.9E-25 244.3 14.3 180 9-203 636-850 (1522)
351 COG4618 ArpD ABC-type protease 99.8 7.2E-21 1.6E-25 212.3 10.9 181 7-203 332-560 (580)
352 TIGR00955 3a01204 The Eye Pigm 99.8 8.8E-21 1.9E-25 225.2 12.4 166 25-201 38-254 (617)
353 KOG0056 Heavy metal exporter H 99.8 8.4E-21 1.8E-25 209.5 10.9 178 9-204 537-762 (790)
354 PLN03073 ABC transporter F fam 99.8 1.8E-20 3.9E-25 225.0 14.7 170 8-198 176-426 (718)
355 PRK13409 putative ATPase RIL; 99.8 2.3E-20 5E-25 220.1 12.6 158 15-190 79-287 (590)
356 cd03270 ABC_UvrA_I The excisio 99.8 2.5E-20 5.4E-25 195.0 11.2 77 111-196 139-226 (226)
357 TIGR00956 3a01205 Pleiotropic 99.8 4.7E-20 1E-24 235.3 13.1 168 25-201 74-298 (1394)
358 COG4778 PhnL ABC-type phosphon 99.8 2.7E-20 5.8E-25 182.8 8.2 166 9-188 4-226 (235)
359 TIGR01271 CFTR_protein cystic 99.8 6.7E-20 1.4E-24 235.6 13.5 162 26-203 440-636 (1490)
360 PTZ00243 ABC transporter; Prov 99.8 9.8E-20 2.1E-24 234.5 10.5 164 25-203 673-870 (1560)
361 KOG0061 Transporter, ABC super 99.8 3.9E-19 8.4E-24 210.4 13.5 183 9-201 25-258 (613)
362 COG4133 CcmA ABC-type transpor 99.8 3.1E-19 6.8E-24 178.3 10.5 150 9-174 2-191 (209)
363 KOG0059 Lipid exporter ABCA1 a 99.8 1.9E-19 4.1E-24 221.2 11.0 178 8-201 563-785 (885)
364 PLN03140 ABC transporter G fam 99.8 1E-19 2.2E-24 232.1 8.5 167 25-201 178-425 (1470)
365 COG0488 Uup ATPase components 99.8 6.1E-19 1.3E-23 204.3 13.3 164 7-189 319-511 (530)
366 COG4136 ABC-type uncharacteriz 99.8 1.1E-18 2.3E-23 168.5 10.3 165 9-187 2-207 (213)
367 COG5265 ATM1 ABC-type transpor 99.8 2.2E-18 4.8E-23 189.0 12.8 178 9-204 262-487 (497)
368 cd03278 ABC_SMC_barmotin Barmo 99.8 2E-18 4.3E-23 177.2 11.7 147 29-189 14-190 (197)
369 KOG0054 Multidrug resistance-a 99.8 2.5E-18 5.5E-23 213.4 14.2 180 9-205 1138-1364(1381)
370 COG4138 BtuD ABC-type cobalami 99.8 1.8E-19 4E-24 177.6 2.1 189 8-218 2-236 (248)
371 KOG0054 Multidrug resistance-a 99.8 3.4E-18 7.3E-23 212.3 13.1 181 7-202 516-730 (1381)
372 cd03279 ABC_sbcCD SbcCD and ot 99.7 2.8E-18 6.1E-23 177.8 9.2 164 9-191 5-210 (213)
373 cd03271 ABC_UvrA_II The excisi 99.7 1.3E-17 2.8E-22 178.2 10.1 80 110-198 170-261 (261)
374 KOG0927 Predicted transporter 99.7 1.1E-17 2.4E-22 188.0 8.1 168 7-193 387-585 (614)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.5E-16 3.3E-21 167.3 11.4 69 110-188 159-234 (243)
376 cd03240 ABC_Rad50 The catalyti 99.7 9.8E-17 2.1E-21 165.5 9.7 134 42-189 24-197 (204)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.7 2.2E-17 4.9E-22 171.4 4.7 69 111-189 129-204 (212)
378 COG4615 PvdE ABC-type sideroph 99.7 1.5E-16 3.3E-21 173.2 10.2 171 9-196 322-530 (546)
379 KOG0927 Predicted transporter 99.6 3.2E-16 6.9E-21 176.5 9.1 177 9-201 75-307 (614)
380 KOG0066 eIF2-interacting prote 99.6 7.3E-16 1.6E-20 168.7 11.5 163 7-188 584-775 (807)
381 KOG2355 Predicted ABC-type tra 99.6 1.1E-15 2.4E-20 154.4 12.0 177 8-199 12-233 (291)
382 COG4170 SapD ABC-type antimicr 99.6 2.5E-16 5.4E-21 159.3 5.7 186 9-203 3-248 (330)
383 cd03273 ABC_SMC2_euk Eukaryoti 99.6 2.5E-15 5.5E-20 159.4 12.6 68 111-188 168-242 (251)
384 KOG0065 Pleiotropic drug resis 99.6 3.4E-16 7.4E-21 190.9 5.8 194 25-232 804-1048(1391)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.6 3.9E-15 8.5E-20 157.8 12.8 70 111-189 157-233 (247)
386 COG1129 MglA ABC-type sugar tr 99.6 3.1E-15 6.8E-20 170.4 11.9 172 8-200 262-487 (500)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.6 1.2E-14 2.6E-19 149.5 12.4 140 42-190 23-191 (198)
388 cd03280 ABC_MutS2 MutS2 homolo 99.6 3.5E-15 7.6E-20 153.2 7.4 139 30-195 19-171 (200)
389 COG1245 Predicted ATPase, RNas 99.5 1E-14 2.2E-19 161.5 9.4 161 10-188 343-530 (591)
390 PRK00635 excinuclease ABC subu 99.5 1.5E-14 3.2E-19 184.5 11.8 83 112-203 812-906 (1809)
391 PF00005 ABC_tran: ABC transpo 99.5 3.7E-15 8E-20 142.6 4.7 102 28-135 1-137 (137)
392 KOG0062 ATPase component of AB 99.5 5.3E-15 1.1E-19 165.9 5.4 168 9-192 80-273 (582)
393 PRK00349 uvrA excinuclease ABC 99.5 3.1E-14 6.7E-19 174.6 11.4 84 111-203 832-927 (943)
394 COG4178 ABC-type uncharacteriz 99.5 5.2E-14 1.1E-18 163.4 11.6 163 8-188 391-587 (604)
395 TIGR00630 uvra excinuclease AB 99.5 4.7E-14 1E-18 172.7 11.8 81 111-200 830-922 (924)
396 cd03227 ABC_Class2 ABC-type Cl 99.5 4.1E-14 8.9E-19 140.7 5.5 125 38-188 19-154 (162)
397 cd03239 ABC_SMC_head The struc 99.5 7E-14 1.5E-18 141.5 6.5 127 42-189 24-172 (178)
398 cd03243 ABC_MutS_homologs The 99.5 7E-14 1.5E-18 143.7 6.6 140 38-198 27-174 (202)
399 KOG0062 ATPase component of AB 99.4 4.6E-13 1E-17 150.6 9.7 170 7-194 360-559 (582)
400 cd03283 ABC_MutS-like MutS-lik 99.4 6.1E-13 1.3E-17 137.0 8.9 137 26-188 15-164 (199)
401 COG1245 Predicted ATPase, RNas 99.4 3.6E-13 7.9E-18 149.4 7.7 159 16-188 81-287 (591)
402 cd03285 ABC_MSH2_euk MutS2 hom 99.4 1.5E-13 3.3E-18 143.8 3.7 150 25-197 17-175 (222)
403 cd03277 ABC_SMC5_euk Eukaryoti 99.4 1.9E-12 4.1E-17 134.8 11.3 74 111-191 128-211 (213)
404 cd03282 ABC_MSH4_euk MutS4 hom 99.3 2.4E-12 5.1E-17 133.2 4.8 130 25-177 16-155 (204)
405 cd03284 ABC_MutS1 MutS1 homolo 99.3 5.3E-12 1.2E-16 131.6 7.2 144 26-199 19-177 (216)
406 KOG0060 Long-chain acyl-CoA tr 99.3 2.5E-11 5.5E-16 138.3 11.9 168 8-194 432-646 (659)
407 KOG0066 eIF2-interacting prote 99.2 8.1E-12 1.8E-16 137.5 5.4 169 8-193 263-488 (807)
408 COG3845 ABC-type uncharacteriz 99.2 7.8E-11 1.7E-15 132.8 11.4 178 7-200 255-489 (501)
409 cd03281 ABC_MSH5_euk MutS5 hom 99.2 7.3E-11 1.6E-15 122.9 8.6 130 27-177 18-158 (213)
410 smart00534 MUTSac ATPase domai 99.1 2.7E-11 6E-16 123.1 3.3 120 42-183 1-130 (185)
411 COG0178 UvrA Excinuclease ATPa 99.1 2.3E-10 4.9E-15 134.7 11.1 81 114-203 827-919 (935)
412 KOG0064 Peroxisomal long-chain 99.1 2.6E-10 5.7E-15 128.6 10.8 160 9-188 481-682 (728)
413 cd03241 ABC_RecN RecN ATPase i 99.1 2E-10 4.3E-15 124.0 8.9 71 111-191 172-249 (276)
414 COG2401 ABC-type ATPase fused 99.1 2.2E-10 4.8E-15 126.2 9.2 159 25-192 396-587 (593)
415 PRK00635 excinuclease ABC subu 99.1 2.3E-10 5E-15 146.8 8.9 82 114-204 1704-1797(1809)
416 KOG0065 Pleiotropic drug resis 99.0 2.3E-10 5.1E-15 140.7 7.0 169 25-202 128-350 (1391)
417 TIGR02858 spore_III_AA stage I 99.0 7.2E-10 1.6E-14 119.4 9.9 136 41-202 112-268 (270)
418 cd03287 ABC_MSH3_euk MutS3 hom 99.0 6.1E-10 1.3E-14 116.8 5.7 131 25-177 18-158 (222)
419 TIGR01069 mutS2 MutS2 family p 98.9 1.9E-09 4.1E-14 131.2 7.7 125 31-177 314-449 (771)
420 KOG0063 RNAse L inhibitor, ABC 98.9 1.6E-09 3.4E-14 120.0 5.6 139 39-188 366-531 (592)
421 PRK00349 uvrA excinuclease ABC 98.9 1.7E-09 3.6E-14 133.4 5.6 81 114-203 494-585 (943)
422 cd03242 ABC_RecF RecF is a rec 98.9 1.7E-08 3.7E-13 108.7 12.4 67 114-192 188-269 (270)
423 TIGR00630 uvra excinuclease AB 98.9 2E-09 4.3E-14 132.6 5.6 81 113-202 491-582 (924)
424 PF02463 SMC_N: RecF/RecN/SMC 98.8 1.9E-08 4.2E-13 104.3 11.7 69 109-187 136-211 (220)
425 cd01851 GBP Guanylate-binding 98.8 2.2E-09 4.7E-14 112.7 4.0 197 37-241 4-223 (224)
426 cd03286 ABC_MSH6_euk MutS6 hom 98.8 4.8E-09 1E-13 109.8 4.9 128 25-177 17-157 (218)
427 PRK00409 recombination and DNA 98.7 1.9E-08 4.1E-13 122.8 7.5 128 38-187 325-463 (782)
428 PRK07721 fliI flagellum-specif 98.7 6.8E-08 1.5E-12 110.6 9.8 153 26-200 147-340 (438)
429 COG3910 Predicted ATPase [Gene 98.6 2.4E-07 5.1E-12 93.7 11.0 65 117-190 137-204 (233)
430 PRK08533 flagellar accessory p 98.5 5.7E-07 1.2E-11 94.9 11.0 125 34-174 20-163 (230)
431 PTZ00132 GTP-binding nuclear p 98.5 2.3E-07 5E-12 95.9 6.7 41 114-160 157-205 (215)
432 PF13304 AAA_21: AAA domain; P 98.4 3E-07 6.5E-12 93.5 5.2 57 112-175 239-301 (303)
433 cd01124 KaiC KaiC is a circadi 98.4 1E-06 2.2E-11 88.5 8.9 59 126-188 97-163 (187)
434 KOG0063 RNAse L inhibitor, ABC 98.4 4.7E-07 1E-11 100.8 6.1 67 114-188 218-287 (592)
435 PRK13695 putative NTPase; Prov 98.3 3.9E-07 8.4E-12 91.5 4.8 133 42-195 2-156 (174)
436 cd01120 RecA-like_NTPases RecA 98.3 2.6E-06 5.6E-11 82.4 8.8 123 42-174 1-138 (165)
437 TIGR02788 VirB11 P-type DNA tr 98.3 5E-07 1.1E-11 99.3 3.7 147 33-215 139-292 (308)
438 cd01128 rho_factor Transcripti 98.3 3.4E-06 7.3E-11 90.2 9.5 67 114-192 142-211 (249)
439 TIGR00634 recN DNA repair prot 98.2 1.2E-06 2.7E-11 103.8 5.4 71 111-191 442-519 (563)
440 PRK06067 flagellar accessory p 98.1 9.9E-06 2.1E-10 85.2 9.9 128 32-175 19-167 (234)
441 PRK10869 recombination and rep 98.1 3.9E-06 8.5E-11 99.3 6.3 70 111-190 432-508 (553)
442 cd00820 PEPCK_HprK Phosphoenol 98.0 3.3E-06 7.1E-11 78.9 3.4 34 26-61 3-36 (107)
443 PRK05399 DNA mismatch repair p 98.0 6.4E-06 1.4E-10 102.0 5.5 126 27-177 597-734 (854)
444 TIGR03238 dnd_assoc_3 dnd syst 98.0 3.7E-06 8E-11 96.3 3.1 42 24-73 18-59 (504)
445 PHA02562 46 endonuclease subun 98.0 8E-06 1.7E-10 96.5 6.0 68 114-192 473-555 (562)
446 TIGR00618 sbcc exonuclease Sbc 97.9 8.8E-06 1.9E-10 103.2 6.2 75 108-190 949-1036(1042)
447 TIGR01026 fliI_yscN ATPase Fli 97.9 3E-05 6.5E-10 89.2 8.9 36 26-64 152-187 (440)
448 PF00488 MutS_V: MutS domain V 97.8 1.4E-05 3E-10 84.9 4.6 130 27-177 32-170 (235)
449 smart00382 AAA ATPases associa 97.8 8.3E-05 1.8E-09 68.7 9.4 25 40-64 2-26 (148)
450 cd01131 PilT Pilus retraction 97.8 1.1E-05 2.4E-10 83.2 3.5 113 42-187 3-121 (198)
451 PRK03918 chromosome segregatio 97.8 1.8E-05 3.9E-10 98.5 5.0 73 108-189 787-868 (880)
452 PRK06793 fliI flagellum-specif 97.7 6.3E-05 1.4E-09 86.2 7.6 161 10-197 131-305 (432)
453 cd01125 repA Hexameric Replica 97.7 3.1E-05 6.7E-10 81.9 4.6 46 126-173 113-159 (239)
454 PF09818 ABC_ATPase: Predicted 97.7 0.00015 3.2E-09 82.3 9.9 146 32-191 239-415 (448)
455 PRK13830 conjugal transfer pro 97.7 0.00012 2.6E-09 90.6 9.9 64 126-196 654-726 (818)
456 PRK06995 flhF flagellar biosyn 97.6 0.00011 2.4E-09 85.2 8.3 66 30-103 248-316 (484)
457 PRK01156 chromosome segregatio 97.6 4.9E-05 1.1E-09 95.0 5.2 72 109-188 801-883 (895)
458 TIGR03880 KaiC_arch_3 KaiC dom 97.6 0.00065 1.4E-08 71.0 12.0 58 126-188 109-177 (224)
459 PRK10246 exonuclease subunit S 97.5 6.6E-05 1.4E-09 95.2 5.0 73 108-188 948-1031(1047)
460 cd01130 VirB11-like_ATPase Typ 97.5 7E-05 1.5E-09 76.3 3.4 35 28-64 15-49 (186)
461 PF13555 AAA_29: P-loop contai 97.5 0.0001 2.2E-09 62.3 3.5 25 39-63 22-46 (62)
462 TIGR03015 pepcterm_ATPase puta 97.5 0.00035 7.6E-09 74.5 8.4 37 25-63 29-66 (269)
463 TIGR00235 udk uridine kinase. 97.4 8.4E-05 1.8E-09 76.9 3.4 26 38-63 4-29 (207)
464 cd00009 AAA The AAA+ (ATPases 97.4 0.00049 1.1E-08 64.4 8.2 26 38-63 17-42 (151)
465 TIGR02655 circ_KaiC circadian 97.4 0.00067 1.5E-08 79.3 10.9 42 146-188 141-190 (484)
466 PRK10078 ribose 1,5-bisphospho 97.4 9.7E-05 2.1E-09 75.1 3.4 25 40-64 2-26 (186)
467 PRK14721 flhF flagellar biosyn 97.4 0.00053 1.1E-08 78.5 9.7 60 38-103 189-251 (420)
468 TIGR02168 SMC_prok_B chromosom 97.4 0.00011 2.5E-09 93.3 4.8 70 109-188 1089-1165(1179)
469 PRK09825 idnK D-gluconate kina 97.4 0.00012 2.6E-09 74.3 3.6 26 39-64 2-27 (176)
470 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0014 3.1E-08 68.5 11.7 28 32-61 14-41 (229)
471 TIGR00416 sms DNA repair prote 97.4 0.00079 1.7E-08 78.1 10.4 145 33-191 89-247 (454)
472 PRK10416 signal recognition pa 97.4 0.00064 1.4E-08 75.4 9.1 27 38-64 112-138 (318)
473 COG0178 UvrA Excinuclease ATPa 97.3 0.00019 4.1E-09 86.0 5.1 83 114-205 486-579 (935)
474 TIGR00606 rad50 rad50. This fa 97.3 0.00013 2.8E-09 94.7 3.4 62 109-176 1199-1273(1311)
475 TIGR01070 mutS1 DNA mismatch r 97.3 0.00046 9.9E-09 85.5 7.7 129 27-177 582-719 (840)
476 PRK06002 fliI flagellum-specif 97.2 0.00038 8.3E-09 80.0 5.9 52 8-64 138-189 (450)
477 TIGR00152 dephospho-CoA kinase 97.2 0.0016 3.5E-08 66.3 9.6 127 42-189 1-132 (188)
478 PRK02224 chromosome segregatio 97.2 0.00045 9.8E-09 86.3 6.3 72 109-189 781-868 (880)
479 PRK14722 flhF flagellar biosyn 97.2 0.00089 1.9E-08 75.6 8.0 68 28-103 127-197 (374)
480 PRK00300 gmk guanylate kinase; 97.2 0.0003 6.6E-09 72.1 3.7 27 38-64 3-29 (205)
481 PRK14723 flhF flagellar biosyn 97.2 0.00094 2E-08 81.2 8.4 68 28-103 175-245 (767)
482 TIGR03263 guanyl_kin guanylate 97.1 0.00032 6.8E-09 70.4 3.4 25 40-64 1-25 (180)
483 PRK09270 nucleoside triphospha 97.1 0.00033 7.2E-09 73.7 3.7 33 38-74 31-63 (229)
484 PRK00064 recF recombination pr 97.1 0.00062 1.3E-08 76.7 6.0 68 114-192 278-359 (361)
485 TIGR02322 phosphon_PhnN phosph 97.1 0.00039 8.4E-09 69.9 3.5 24 40-63 1-24 (179)
486 cd01122 GP4d_helicase GP4d_hel 97.1 0.0028 6.1E-08 67.9 10.1 35 27-63 19-53 (271)
487 TIGR01420 pilT_fam pilus retra 97.0 0.00077 1.7E-08 75.5 5.6 118 38-187 120-242 (343)
488 cd04155 Arl3 Arl3 subfamily. 97.0 0.00056 1.2E-08 67.5 3.7 32 42-73 16-47 (173)
489 TIGR02169 SMC_prok_A chromosom 97.0 0.00066 1.4E-08 86.7 5.3 71 109-189 1074-1151(1164)
490 PLN03210 Resistant to P. syrin 97.0 0.0014 3.1E-08 84.2 8.1 31 31-63 200-230 (1153)
491 PRK09862 putative ATP-dependen 97.0 0.00068 1.5E-08 79.4 4.7 54 12-74 187-240 (506)
492 TIGR01526 nadR_NMN_Atrans nico 97.0 0.002 4.3E-08 71.7 8.1 24 40-63 162-185 (325)
493 TIGR00767 rho transcription te 96.9 0.00099 2.2E-08 75.5 5.6 51 9-63 130-191 (415)
494 cd01121 Sms Sms (bacterial rad 96.9 0.0034 7.3E-08 71.1 9.9 145 34-190 78-234 (372)
495 PRK13891 conjugal transfer pro 96.9 0.002 4.4E-08 80.3 8.8 44 126-176 689-733 (852)
496 cd02025 PanK Pantothenate kina 96.9 0.00048 1E-08 72.4 2.6 23 42-64 1-23 (220)
497 COG3044 Predicted ATPase of th 96.9 0.0042 9.1E-08 69.7 10.0 151 32-191 237-410 (554)
498 cd02023 UMPK Uridine monophosp 96.9 0.00053 1.2E-08 70.2 2.8 22 42-63 1-22 (198)
499 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0029 6.4E-08 66.2 8.2 28 34-63 15-42 (235)
500 TIGR00554 panK_bact pantothena 96.8 0.0007 1.5E-08 74.1 3.2 24 41-64 63-86 (290)
No 1
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=100.00 E-value=1.6e-163 Score=1336.21 Aligned_cols=730 Identities=58% Similarity=0.931 Sum_probs=699.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCV 87 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t 87 (825)
+..|++|..+.|+..++..+.+.+.+..||.+|++|+|+||++||||||||+|+|+.|.+|+...||+|+++|+|+.+..
T Consensus 5 ~stQlIDe~keFn~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~ 84 (772)
T KOG2203|consen 5 CSTQLIDEEKEFNVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCA 84 (772)
T ss_pred ccceeeccccccchhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhc
Confidence 47899999999987678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHHHHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCC--cE
Q 039839 88 GIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK--TT 165 (825)
Q Consensus 88 ~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g--~T 165 (825)
..+...++||++|++++||+++ ++||||.++||.|+++|+|++||++++|+|+++|++++++|++++.+|+..++ ++
T Consensus 85 ~i~p~i~vmDvEGTDGrERGED-qdFErksALFaiavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~rk~k~~ 163 (772)
T KOG2203|consen 85 GIEPCILVMDVEGTDGRERGED-QDFERKSALFAIAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPRKNKTL 163 (772)
T ss_pred CCCCceEEEecccCCccccccc-ccHHHHhHHHHHhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCCCCceE
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999998755 89
Q ss_pred EEEEecCC-CCccccccCcEEEEeCCeEEEecCcccccCCcccccccccccccccccccchhhHHHHHHHHhhhhccc-C
Q 039839 166 LLFVIRDK-TKTPLEYLEPILREDIQKIWDAVPKPQTLKNTPLSEFFNVEVTALSSYEEKEGQFKEQVAELRQRFFHS-I 243 (825)
Q Consensus 166 IL~VTHDl-~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~~l~d~f~~~~~~l~h~~~~~~~F~~~v~~Lr~~f~~~-~ 243 (825)
++||++|. ..+|++....++.-+..+||.+.++|+.+++..+.|||++.|.+|+||++++++|.++|..||+||.++ +
T Consensus 164 LlFVIRD~~~~TplenLe~~l~~dlqkIW~sl~KPe~~e~s~l~DfFdv~~v~Ls~~~~kedqF~e~V~~LrqrFv~s~~ 243 (772)
T KOG2203|consen 164 LLFVIRDKTGVTPLENLEDVLREDLQKIWDSLSKPEGHENSPLNDFFDVEFVGLSHKELKEDQFKEQVASLRQRFVHSGI 243 (772)
T ss_pred EEEEEecccCCCchHHhhHHHHHHHHHHHHhcCCcccccCCchhhhhceeeeecchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 668888888999889999999999999999999999999999999999999999999999999999988 7
Q ss_pred CCCCccccccccccCCcccccHHHHHHHHhhcCCCCCchhhhHhhhhchHHHHHHHHHhhhhhhhhHHHHHHHhcCCccc
Q 039839 244 SPGGLAGDRQGVVPASGFSFSAQQIWRVIKENKDLDLPAHKVMVATVRCEEIANDKLRRLSADEGWLALEEAVQEGPVSG 323 (825)
Q Consensus 244 ~~~~l~~~~~~~iP~dg~~~~~~~iW~~I~~nkdLdlP~q~~~lA~~rC~ei~~~~~~~f~~~~~~~~l~~~~~~g~~~~ 323 (825)
+|.+++++||++||+|||++|+++||++|++||||||||||+|||+|||+||++|+|+.|.+++.|..+.++++.|++++
T Consensus 244 s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s~ 323 (772)
T KOG2203|consen 244 SPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVSG 323 (772)
T ss_pred CCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCccc
Confidence 78788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 039839 324 FGKRLSSVLDTYLSEYDMEAVYFDEGVRNAKRKQLESKALDFVYPTYSTLLGHLRSKAFESFKIQLEQSLKKGEGFAASV 403 (825)
Q Consensus 324 fg~~~~~~~~~~l~~yd~~A~ry~~~V~~~kr~~L~~~i~~~l~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~F~~~~ 403 (825)
||++|..++++||++||++|+||+++||++||++|..++++.++|.|+.+|+|||+.++++||.++++.++.+.+|++++
T Consensus 324 l~~kL~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~gF~es~ 403 (772)
T KOG2203|consen 324 LGKKLSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEGFSESV 403 (772)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHhhcCCChhH
Q 039839 404 RTCTQSCMLEFDRGCADAAIRQAKWDASKVREKLRRDIDTEASSVRSVKLSAIIADHEKNLTEALSGPVESLFEVGDEDT 483 (825)
Q Consensus 404 ~~~~~~~~~~f~~~~~~~~i~~~~w~~~~~~~~l~~~l~~~~~~~r~~~l~~l~~~~~k~l~~~l~~~v~~ll~~~~~~~ 483 (825)
..+.++|+.+|+++|+++.++|+.|++++++++|.++|++|+.++|..+|++++..|++++..+|++||+.+|+++++++
T Consensus 404 ~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~~s~ev 483 (772)
T KOG2203|consen 404 ADGKQSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDGASKEV 483 (772)
T ss_pred HHHHHHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhhhccccCCCCC
Q 039839 484 WASIRRLLKRETEAAVLKFSTAIAGFE--MDQAAVDTMVQNLRSYARNVVVKKQEKK--------LEKFSTVFNHDNDSL 553 (825)
Q Consensus 484 W~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~lr~~~~~~~~~~~~e~--------~~rFe~~FryD~~g~ 553 (825)
||.|++.|++..+.++..+++...||+ +++++++++++.||.+||..++.|++++ |+||+++||||.|||
T Consensus 484 W~ti~n~f~~e~n~av~~~~~~~~~f~~~~de~t~~~m~~nlk~~a~~~~etk~~ee~~~il~rmrdRFe~vFr~Dsd~m 563 (772)
T KOG2203|consen 484 WDTIRNLFRRETNTAVYGLSNAVYGFEIGLDEETRDKMVKNLKNYAWGTVETKAKEEADRILMRMRDRFETVFRYDSDGM 563 (772)
T ss_pred HHHHHHHHHhccchhHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999999999998 9999999999999999999999999998 999999999999999
Q ss_pred CccccCccchhhHHHHHHHHHHHHHhhHhhhccCCCCcchhhhhhhccccCcccCCCCCCCCCCCCCCCCCccccCCCCC
Q 039839 554 PRVWTGKEDIRTITKDARAASLRLLSVMAAIRLDEKPDKVESLLFSSLMDGTAAASLPRDRSIGDSVDPLASSMWEEVSP 633 (825)
Q Consensus 554 PR~W~~~~di~~~~~~Ar~~al~ll~~l~~~rl~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~ 633 (825)
||+|++++|||+||+.||++||+||++|+.||++|+- +.+|+.++.+...+. ..+|. +.||++++ .+
T Consensus 564 PrlWk~kedI~~~~r~ar~~aL~llsVla~irlsDni---e~~l~v~l~~~e~~~----~s~i~-t~d~lass-----~~ 630 (772)
T KOG2203|consen 564 PRLWKGKEDIDAITRVARSAALKLLSVLAVIRLSDNI---EKTLTVALADEESNE----TSSIY-TNDPLASS-----AS 630 (772)
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHHhheecCCc---cccCccccccCCCCC----CCccc-ccCccccC-----Cc
Confidence 9999999999999999999999999999999999654 445666888766544 12254 68898765 67
Q ss_pred CCcccCHHHHHHHHHHHHHhhhHHHHHhhHHHHHhhhCCCCCCcHHHHHHHHHhchHHHHHHHHhHHHHHHHHHHHHHHH
Q 039839 634 QDKLITPVQCKSLWRQFKAETEYTVTQAISAQEAHKKNNNWMPPPWAILTMAVLGFNEFMLLLKNPLYLMILFVAYLLLR 713 (825)
Q Consensus 634 ~~~lls~~~~~~~~~~F~~~~~~~~~~Al~~~ea~r~~~~~~iP~w~~~~l~vLGwNE~m~vlrnPl~~~l~~v~~~~~~ 713 (825)
+.+||||.||++||+||| +++|++.+|+++||++ ++++||||+|++|+||||||||++|||||||+++||+++++|
T Consensus 631 ~~tilt~vq~ksi~~qFk-rt~~~v~~d~k~s~~n---t~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~v~~~~~~ 706 (772)
T KOG2203|consen 631 FATILTPVQCKSIWRQFK-RTEYTVTQDIKRSEIN---TNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLFVGGLVSK 706 (772)
T ss_pred cceeccHHHHHHHHHHHH-HhhhHHHHHHHHHHhc---CCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 899999999999999999 8889999998888887 445677799999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHhhhccccchhhhccchHHHHHHHHHHHHHhhc
Q 039839 714 ALWVQMDIAAEFRHGALPGILSISSKFLPTIMNLIRRLAEEAQ 756 (825)
Q Consensus 714 ~~~~qldi~~~~~~g~~~~~~~~s~~~~~~~~~~~k~l~~~~~ 756 (825)
++|+|++|. +||+|++||++|++.+|+|++||++++++.+||
T Consensus 707 ~l~~q~~i~-ef~~~vl~~~~s~~~k~~~tv~n~lrq~ave~~ 748 (772)
T KOG2203|consen 707 ALWVQGLIP-EFQNGVLPGVLSISGKFRTTVMNLLRQLAVEGQ 748 (772)
T ss_pred HHHHhccch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998 899999999999999999999999999999999
No 2
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=100.00 E-value=6.5e-144 Score=1283.95 Aligned_cols=695 Identities=46% Similarity=0.742 Sum_probs=647.6
Q ss_pred ECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccc---hhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHH
Q 039839 46 MGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGI---EPFTIAMDLEGSDSRERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 46 iGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~---enl~l~ld~~g~~~~er~e~~~~~ErQRv~iAr 122 (825)
+||++||||||||.|||+.|++|+. .||+|+|+|+|++..... ....+++|++|++++||+++.. ||||.++||.
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~-~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~l 78 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDE-SGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFAL 78 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccccc-ccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHH
Confidence 6999999999999999999999999 899999999999876653 5677889999999999998854 9999999999
Q ss_pred HHHHHheecCCCCCCccccccCHHHHHHHHHHHHHhh-----CCCCcEEEEEecCC-CCccccccCcEEEEeCCeEEEec
Q 039839 123 AIADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-----SPRKTTLLFVIRDK-TKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 123 ALa~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~-----~~~g~TIL~VTHDl-~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|+++|+|+|+|++++|++++||++++++||+++.+|+ ..++++++||+||+ +.+|++.....+.-+..+||...
T Consensus 79 a~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~~tp~e~l~~~l~~dl~~iW~~i 158 (742)
T PF05879_consen 79 AVSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTGVTPLENLEETLREDLEKIWDSI 158 (742)
T ss_pred HhhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 44689999999999 45887777788888889999999
Q ss_pred CcccccCCcccccccccccccccccccchhhHHHHHHHHhhhhccc-CCCCC-ccccccccccCCcccccHHHHHHHHhh
Q 039839 197 PKPQTLKNTPLSEFFNVEVTALSSYEEKEGQFKEQVAELRQRFFHS-ISPGG-LAGDRQGVVPASGFSFSAQQIWRVIKE 274 (825)
Q Consensus 197 ~~~e~l~~~~l~d~f~~~~~~l~h~~~~~~~F~~~v~~Lr~~f~~~-~~~~~-l~~~~~~~iP~dg~~~~~~~iW~~I~~ 274 (825)
++|+.+++..+.++|+++|++|||+++++++|.++|..||+||.++ ..+++ ++++||++||+|||++|+++||++|++
T Consensus 159 ~kP~~~~~~~~~d~Fd~~f~~LpH~~~~~e~F~~~v~~Lr~rf~~~~~~~~~~~~~~y~~~iP~dG~~~y~~~iW~~I~~ 238 (742)
T PF05879_consen 159 SKPEGFENSSLSDFFDLEFTALPHKILQPEKFNEDVAKLRQRFVDSKNIEDGLFKPEYHRRIPADGFSMYAENIWEQIKN 238 (742)
T ss_pred cCcccccCCChhheeeeeeeccCchhhhHHHHHHHHHHHHHHHhccCcCCCCCCchhhcCCCChHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987 33444 488999999999999999999999999
Q ss_pred cCCCCCchhhhHhhhhchHHHHHHHHHhhhhh-----hhhHHHHHHHhcCCcccHHHHHHHHHHHHHHhhhhhhhcccHH
Q 039839 275 NKDLDLPAHKVMVATVRCEEIANDKLRRLSAD-----EGWLALEEAVQEGPVSGFGKRLSSVLDTYLSEYDMEAVYFDEG 349 (825)
Q Consensus 275 nkdLdlP~q~~~lA~~rC~ei~~~~~~~f~~~-----~~~~~l~~~~~~g~~~~fg~~~~~~~~~~l~~yd~~A~ry~~~ 349 (825)
||||||||||+|||+|||+||++++|..|.++ +.|..+++..+.+++++||+.|.+++++||++||.+|+||+++
T Consensus 239 nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~ 318 (742)
T PF05879_consen 239 NKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKS 318 (742)
T ss_pred CccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999986 5566666666777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Q 039839 350 VRNAKRKQLESKALDFVYPTYSTLLGHLRSKAFESFKIQLEQSLKKGEGFAASVRTCTQSCMLEFDRGCADAAIRQAKWD 429 (825)
Q Consensus 350 V~~~kr~~L~~~i~~~l~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~F~~~~~~~~~~~~~~f~~~~~~~~i~~~~w~ 429 (825)
||++||++|+++|...++|+|+.||+|||++++++|++.+.+.++.+++|+..++.|.++++.+|+++|+++.++++.|+
T Consensus 319 V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws 398 (742)
T PF05879_consen 319 VYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWS 398 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 99999999999999999999999999999999999999999889889999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 039839 430 A-SKVREKLRRDIDTEASSVRSVKLSAIIADHEKNLTEALSGPVESLFEVGDEDTWASIRRLLKRETEAAVLKFSTAIAG 508 (825)
Q Consensus 430 ~-~~~~~~l~~~l~~~~~~~r~~~l~~l~~~~~k~l~~~l~~~v~~ll~~~~~~~W~~i~~~~~~~~~~~~~~~~~~~~~ 508 (825)
+ +++++.|.++|+++++++|.+++++|+++++|++++.|+++|..+|++|+++||++|++.|.+++++++++|.+.+.|
T Consensus 399 ~se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~ 478 (742)
T PF05879_consen 399 YSEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDRLKG 478 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhccccCCCCCCccccCccchhhHHHHHHHHHHHHH
Q 039839 509 FEMDQAAVDTMVQNLRSYARNVVVKKQEKK----------LEKFSTVFNHDNDSLPRVWTGKEDIRTITKDARAASLRLL 578 (825)
Q Consensus 509 ~~~~~~e~~~~~~~lr~~~~~~~~~~~~e~----------~~rFe~~FryD~~g~PR~W~~~~di~~~~~~Ar~~al~ll 578 (825)
|++++++++.++++||.++|.+|+.+++|+ |+||+++||||++|+||+|+++|||++||++||++||+||
T Consensus 479 f~~s~~e~~~~~~~lr~~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~FryDe~g~PRvW~~eddI~~if~~ARe~AL~LL 558 (742)
T PF05879_consen 479 FGLSEEENEKALKKLRRKAWSVLREKIREEASEDNLLIRLKDRFEDKFRYDEDGVPRVWKPEDDIDAIFRKAREHALKLL 558 (742)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhCcCCCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred hhHhhhccCCCCcchhhhhhhccccCcccCCCCCCCCCCCCCCCCCccccCCCCCCCcccCHHHHHHHHHHHHHhhhHHH
Q 039839 579 SVMAAIRLDEKPDKVESLLFSSLMDGTAAASLPRDRSIGDSVDPLASSMWEEVSPQDKLITPVQCKSLWRQFKAETEYTV 658 (825)
Q Consensus 579 ~~l~~~rl~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~lls~~~~~~~~~~F~~~~~~~~ 658 (825)
|+|+++||+++++++|+++.....+.. .+..+..++. +.||+++++|++++++++||||.+|++||+||+++++++|
T Consensus 559 ~vLa~iRL~d~~~~~~~~~~~~~~~~~--~~~~~~~~i~-~~d~l~~~~~~~~~~~~~lls~~~~~~i~~~Fk~~~~~~~ 635 (742)
T PF05879_consen 559 PVLAIIRLSDGSEIIPDVDISSLEPAS--SSPGSSESIS-AIDPLDSSEWEEVDEFATLLSESQCKSIWRQFKREIDYTY 635 (742)
T ss_pred HHHHhhhccCCcccCcccchhhccccC--cCcccccccc-cccccccccccccccceEeccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876443332222 1112234443 6799999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhCCCCCCcHHHHHHHHHhchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccccchhhhcc
Q 039839 659 TQAISAQEAHKKNNNWMPPPWAILTMAVLGFNEFMLLLKNPLYLMILFVAYLLLRALWVQMDIAAEFRHGALPGILSISS 738 (825)
Q Consensus 659 ~~Al~~~ea~r~~~~~~iP~w~~~~l~vLGwNE~m~vlrnPl~~~l~~v~~~~~~~~~~qldi~~~~~~g~~~~~~~~s~ 738 (825)
+|| ++.+.+++++||+|||++|+||||||||+||||||||+++|++++++|++| |||+.++ +.
T Consensus 636 ~eA----krs~~~~~~~iP~w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~-~l~l~~p------------~~ 698 (742)
T PF05879_consen 636 VEA----KRSIISSNTQIPPWMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY-QLNLWGP------------AI 698 (742)
T ss_pred HHH----HHHHhcCCCCCCHHHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH-HhcchhH------------HH
Confidence 987 445558899999999999999999999999999999999999999999999 9999884 45
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCC
Q 039839 739 KFLPTIMNLIRRLAEEAQGQRPPE 762 (825)
Q Consensus 739 ~~~~~~~~~~k~l~~~~~~~~~~~ 762 (825)
+++|++|+.+++++.++......+
T Consensus 699 ~v~~~~~~~~~~~~ke~l~~~~~~ 722 (742)
T PF05879_consen 699 KVVPTAMNEVKRLAKEKLREFLED 722 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhccccC
Confidence 889999999999999999998664
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=306.84 Aligned_cols=180 Identities=22% Similarity=0.268 Sum_probs=155.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
||+++|++|+|+. ..+|++|++.+ .+||+++|+||||||||||||||+|+.. +++|.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v--~~Gevv~iiGpSGSGKSTlLRclN~LE~----~~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSV--EKGEVVVIIGPSGSGKSTLLRCLNGLEE----PDSGSITVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeE--cCCCEEEEECCCCCCHHHHHHHHHCCcC----CCCceEEECCEeccchhhH
Confidence 7999999999998 78999999999 9999999999999999999999999954 44444
Q ss_pred --ccceeeEEcC------CCccchhHHHH-HHhhCCChhhhhhhhhHH--------------------HHHHHHHHHHHH
Q 039839 75 --SQTTKGIWIA------KCVGIEPFTIA-MDLEGSDSRERGEDDTTF--------------------EKQSALFALAIA 125 (825)
Q Consensus 75 --~q~~~G~~~~------~~t~~enl~l~-ld~~g~~~~er~e~~~~~--------------------ErQRv~iArALa 125 (825)
.+..+|++|| +.|+.+|+.+. ..+.|.+..+..+.+..+ |||||+|||||+
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa 152 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 152 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc
Confidence 1345788865 46778999885 455677766655544332 999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
+++|+|||||+||||- ..+|.+++++|+++ |+|.|+|||++.++. +.+|||++|+.|+|+..|++++++
T Consensus 153 M~P~vmLFDEPTSALDPEl------v~EVL~vm~~LA~e-GmTMivVTHEM~FAr-~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 153 MDPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMIIVTHEMGFAR-EVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred CCCCEEeecCCcccCCHHH------HHHHHHHHHHHHHc-CCeEEEEechhHHHH-HhhheEEEeeCCEEEEecCHHHHh
Confidence 9999999999999999 99999999999987 999999999999995 789999999999999999888777
Q ss_pred CCc
Q 039839 203 KNT 205 (825)
Q Consensus 203 ~~~ 205 (825)
.+.
T Consensus 225 ~~p 227 (240)
T COG1126 225 DNP 227 (240)
T ss_pred cCC
Confidence 654
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.9e-34 Score=301.50 Aligned_cols=197 Identities=18% Similarity=0.194 Sum_probs=162.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++++++|+++.|++ +.+++++++++ .+|++++|+||||||||||||+|+|+ +.|.+|+.
T Consensus 1 ~~L~~~~ls~~y~~---~~il~~ls~~i--~~G~i~~iiGpNG~GKSTLLk~l~g~----l~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 1 MMLEVENLSFGYGG---KPILDDLSFSI--PKGEITGILGPNGSGKSTLLKCLAGL----LKPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred CeeEEEEEEEEECC---eeEEecceEEe--cCCcEEEEECCCCCCHHHHHHHHhcc----CCCCCCEEEECCCchhhcCH
Confidence 36999999999987 78999999999 99999999999999999999999999 56777761
Q ss_pred ---cceeeEEcCCC------ccchhHHHHHHh----hCCChhhhhhh--------------------hhHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC------VGIEPFTIAMDL----EGSDSRERGED--------------------DTTFEKQSALFAL 122 (825)
Q Consensus 76 ---q~~~G~~~~~~------t~~enl~l~ld~----~g~~~~er~e~--------------------~~~~ErQRv~iAr 122 (825)
...+||++|.. ++.+-+.++..- .+...++..+. ...+|||||.|||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 24678887764 334444443211 11111111111 1223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ ++|||||||+.||... +.+++++++++.+++|+|+|+|+||++.+ ..+||++++|++|+|++.|+|+
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~------Q~evl~ll~~l~~~~~~tvv~vlHDlN~A-~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAH------QIEVLELLRDLNREKGLTVVMVLHDLNLA-ARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCEEEEEECCeEEeecCcc
Confidence 999 9999999999999999 99999999999987899999999999988 4799999999999999999999
Q ss_pred cccCCcccccccccccccccc
Q 039839 200 QTLKNTPLSEFFNVEVTALSS 220 (825)
Q Consensus 200 e~l~~~~l~d~f~~~~~~l~h 220 (825)
+++..+.+.+.|+++...+.+
T Consensus 225 evlT~e~l~~Vygv~~~~~~~ 245 (258)
T COG1120 225 EVLTEENLREVYGVDADVIED 245 (258)
T ss_pred hhcCHHHHHHHhCCceEEEEc
Confidence 999999999999998765544
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=290.48 Aligned_cols=189 Identities=18% Similarity=0.215 Sum_probs=165.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
||+++|++|.|+. ..+++++|+++ .+|++++++|||||||||+||+|.++ ..|++|+
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I--~~gef~vliGpSGsGKTTtLkMINrL----iept~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTI--EEGEFLVLIGPSGSGKTTTLKMINRL----IEPTSGEILIDGEDISDLDPV 71 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEe--cCCeEEEEECCCCCcHHHHHHHHhcc----cCCCCceEEECCeecccCCHH
Confidence 5899999999986 78999999999 99999999999999999999999999 6777776
Q ss_pred -ccceeeEE------cCCCccchhHHHHHHhhCCChhhhhhhhhHH----------------------HHHHHHHHHHHH
Q 039839 75 -SQTTKGIW------IAKCVGIEPFTIAMDLEGSDSRERGEDDTTF----------------------EKQSALFALAIA 125 (825)
Q Consensus 75 -~q~~~G~~------~~~~t~~enl~l~ld~~g~~~~er~e~~~~~----------------------ErQRv~iArALa 125 (825)
.+..+||+ |++.++.+|+.++..+.|.+..+..+++.++ |+|||.+||||+
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 14567887 7788999999999999998876655554333 999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
+|||||||+++||+-. +..+.+.++++.++.|+||||||||++++ +..+|||++|+.|+|+..++|.+++
T Consensus 152 adP~ilLMDEPFgALDpI~------R~~lQ~e~~~lq~~l~kTivfVTHDidEA-~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 152 ADPPILLMDEPFGALDPIT------RKQLQEEIKELQKELGKTIVFVTHDIDEA-LKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred cCCCeEeecCCccccChhh------HHHHHHHHHHHHHHhCCEEEEEecCHHHH-HhhhceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999 99999999999999999999999999888 5789999999999999999988887
Q ss_pred CCc---cccccccc
Q 039839 203 KNT---PLSEFFNV 213 (825)
Q Consensus 203 ~~~---~l~d~f~~ 213 (825)
.+. ...++++.
T Consensus 225 ~~Pan~FV~~f~g~ 238 (309)
T COG1125 225 ANPANDFVEDFFGE 238 (309)
T ss_pred hCccHHHHHHHhcc
Confidence 543 34455543
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-33 Score=294.18 Aligned_cols=184 Identities=15% Similarity=0.215 Sum_probs=162.7
Q ss_pred eEEEEEeEEEecCc--cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc------------
Q 039839 9 CMQLIDGNGEFNVD--GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------ 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~--~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------ 74 (825)
||++++++|.|... ....+++++++.+ .+|+|+||||.||||||||+|+|.|+. .|++|+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I--~~GeI~GIIG~SGAGKSTLiR~iN~Le----~PtsG~v~v~G~di~~l~ 74 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEI--PKGEIFGIIGYSGAGKSTLLRLINLLE----RPTSGSVFVDGQDLTALS 74 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEE--cCCcEEEEEcCCCCcHHHHHHHHhccC----CCCCceEEEcCEecccCC
Confidence 58999999999652 1246899999999 999999999999999999999999995 466665
Q ss_pred ------ccceeeEEcCCC------ccchhHHHHHHhhCCChhhhhhhhhHH--------------------HHHHHHHHH
Q 039839 75 ------SQTTKGIWIAKC------VGIEPFTIAMDLEGSDSRERGEDDTTF--------------------EKQSALFAL 122 (825)
Q Consensus 75 ------~q~~~G~~~~~~------t~~enl~l~ld~~g~~~~er~e~~~~~--------------------ErQRv~iAr 122 (825)
.+..+|++||+. |+.+|++|++.+.|.++.++..++.++ |||||+|||
T Consensus 75 ~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 75 EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 246789998864 678999999999998877766655443 999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ +|||+||||++|||+. .+.|+++|+++.++.|.||++|||.|+.+. .+||||++|+.|+|++.|+..
T Consensus 155 ALa~~P~iLL~DEaTSALDP~T------T~sIL~LL~~In~~lglTIvlITHEm~Vvk-~ic~rVavm~~G~lvE~G~v~ 227 (339)
T COG1135 155 ALANNPKILLCDEATSALDPET------TQSILELLKDINRELGLTIVLITHEMEVVK-RICDRVAVLDQGRLVEEGTVS 227 (339)
T ss_pred HHhcCCCEEEecCccccCChHH------HHHHHHHHHHHHHHcCCEEEEEechHHHHH-HHhhhheEeeCCEEEEeccHH
Confidence 999 9999999999999999 999999999999999999999999999985 789999999999999999998
Q ss_pred cccCCc
Q 039839 200 QTLKNT 205 (825)
Q Consensus 200 e~l~~~ 205 (825)
++|.++
T Consensus 228 ~vF~~P 233 (339)
T COG1135 228 EVFANP 233 (339)
T ss_pred HhhcCc
Confidence 888654
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.98 E-value=2.1e-32 Score=281.25 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=158.5
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.+.|++++++++|+. +.+++++++.+ ++|++++|+||||||||||||+|.|+ +.|.+|+.
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V--~~Gei~~iiGgSGsGKStlLr~I~Gl----l~P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDV--PRGEILAILGGSGSGKSTLLRLILGL----LRPDKGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeee--cCCcEEEEECCCCcCHHHHHHHHhcc----CCCCCCeEEEcCcchhccC
Confidence 568999999999988 78999999999 99999999999999999999999999 56676761
Q ss_pred -------cceeeEEcCC------CccchhHHHHHHhhC-CChhhhhhh---------------------hhHHHHHHHHH
Q 039839 76 -------QTTKGIWIAK------CVGIEPFTIAMDLEG-SDSRERGED---------------------DTTFEKQSALF 120 (825)
Q Consensus 76 -------q~~~G~~~~~------~t~~enl~l~ld~~g-~~~~er~e~---------------------~~~~ErQRv~i 120 (825)
..+.|++||. ++++||+.|++.-+. .+.....+. ....|++||+|
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 3457777664 678999999876442 232222211 12339999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|||++ ++|++||||+||||-. ...+-+++++|.+..|.|+++||||++.+ +..||+++++.+|+|+..|+
T Consensus 157 ARAialdPell~~DEPtsGLDPI~------a~~~~~LI~~L~~~lg~T~i~VTHDl~s~-~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPIS------AGVIDELIRELNDALGLTVIMVTHDLDSL-LTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcch------HHHHHHHHHHHHHhhCCEEEEEECChHHH-HhhhceEEEEeCCEEEEeCC
Confidence 99999 9999999999999999 99999999999998999999999999776 35899999999999999999
Q ss_pred cccccC--Cccccccccc
Q 039839 198 KPQTLK--NTPLSEFFNV 213 (825)
Q Consensus 198 ~~e~l~--~~~l~d~f~~ 213 (825)
+++... +..+.+||+.
T Consensus 230 ~~el~~sd~P~v~qf~~G 247 (263)
T COG1127 230 PEELLASDDPWVRQFFNG 247 (263)
T ss_pred HHHHHhCCCHHHHHHhcC
Confidence 888764 3345566654
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=3.2e-32 Score=285.85 Aligned_cols=188 Identities=18% Similarity=0.241 Sum_probs=151.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+. ..++.+|++.+ .+|++++|+||||||||||+|+|+|+ +.|.+|+.
T Consensus 3 ~~i~v~nl~v~y~~---~~vl~~i~l~v--~~G~~~~iiGPNGaGKSTLlK~iLGl----l~p~~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGN---RPVLEDISLSV--EKGEITALIGPNGAGKSTLLKAILGL----LKPSSGEIKIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECC---EeeeeccEEEE--cCCcEEEEECCCCCCHHHHHHHHhCC----CcCCcceEEEcccccccccc
Confidence 47999999999987 35999999999 99999999999999999999999998 56676762
Q ss_pred cceeeEEcCCCcc--------chhHHHHHHhh-C---CChhhhhhhh--------------------hHHHHHHHHHHHH
Q 039839 76 QTTKGIWIAKCVG--------IEPFTIAMDLE-G---SDSRERGEDD--------------------TTFEKQSALFALA 123 (825)
Q Consensus 76 q~~~G~~~~~~t~--------~enl~l~ld~~-g---~~~~er~e~~--------------------~~~ErQRv~iArA 123 (825)
+.++||++|+... .+-+.++.... | .......+.+ ..+|+|||.||||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 2579999886532 22222221000 1 1111111111 1229999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++|||||||+|+|+.. +..++++|.+|+++ |+|||+||||++.+. .++|+|+.++ +++.+.|++++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~------~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~-~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAG------QKEIYDLLKELRQE-GKTVLMVTHDLGLVM-AYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred hccCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCcHHhH-hhCCEEEEEc-CeeEeccChhh
Confidence 99 9999999999999999 99999999999998 999999999998873 6899999997 88999999999
Q ss_pred ccCCccccccccc
Q 039839 201 TLKNTPLSEFFNV 213 (825)
Q Consensus 201 ~l~~~~l~d~f~~ 213 (825)
+++...+...|+.
T Consensus 225 ~~~~~~l~~~~g~ 237 (254)
T COG1121 225 VLTEENLEKAFGG 237 (254)
T ss_pred ccCHHHHHHHhCc
Confidence 9988888887774
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.5e-32 Score=283.58 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=146.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----------ccce
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR----------SQTT 78 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~----------~q~~ 78 (825)
++.++++++.|+. ..+++++|+.+ .+||+|+|+||||||||||||+|+|+. .|++|+ ....
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v--~~GEfvsilGpSGcGKSTLLriiAGL~----~p~~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSV--EKGEFVAILGPSGCGKSTLLRLIAGLE----KPTSGEVLLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCcccCCCCCC
Confidence 6999999999987 68999999999 999999999999999999999999995 455554 1346
Q ss_pred eeEEcC------CCccchhHHHHHHhhCCChhhhhhhhhH--------------------HHHHHHHHHHHHH---HHhe
Q 039839 79 KGIWIA------KCVGIEPFTIAMDLEGSDSRERGEDDTT--------------------FEKQSALFALAIA---DIVL 129 (825)
Q Consensus 79 ~G~~~~------~~t~~enl~l~ld~~g~~~~er~e~~~~--------------------~ErQRv~iArALa---~VLL 129 (825)
+||+|| +.|+.+|+.++++..|....++.+.+.. +|||||+|||||+ +|||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence 788865 4577999999999888666555443322 2999999999999 9999
Q ss_pred ecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC--CeEEEec
Q 039839 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI--QKIWDAV 196 (825)
Q Consensus 130 LDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~--GkI~~~g 196 (825)
||||+++||.-. +..+.+.+.++.++.++|+||||||++++ ...+|||++|.+ |+|....
T Consensus 154 lDEPFgALDalT------R~~lq~~l~~lw~~~~~TvllVTHdi~EA-v~LsdRivvl~~~P~~i~~~~ 215 (248)
T COG1116 154 LDEPFGALDALT------REELQDELLRLWEETRKTVLLVTHDVDEA-VYLADRVVVLSNRPGRIGEEL 215 (248)
T ss_pred EcCCcchhhHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHH-HhhhCEEEEecCCCcceeeEE
Confidence 999999999988 99999999999998899999999999877 357999999998 4554433
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=1e-31 Score=294.44 Aligned_cols=182 Identities=14% Similarity=0.151 Sum_probs=156.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
+.++++|++|.|+. ..+++++++.+ .+||+++|+||||||||||||+|+|+ ..|++|+
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i--~~Gef~~lLGPSGcGKTTlLR~IAGf----e~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDI--KKGEFVTLLGPSGCGKTTLLRMIAGF----EQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeee--cCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEECCEECCCCCh
Confidence 47999999999996 68999999999 99999999999999999999999999 5667775
Q ss_pred ccceeeEE------cCCCccchhHHHHHHhhCCCh-hhhhhhhhH--------------------HHHHHHHHHHHHH--
Q 039839 75 SQTTKGIW------IAKCVGIEPFTIAMDLEGSDS-RERGEDDTT--------------------FEKQSALFALAIA-- 125 (825)
Q Consensus 75 ~q~~~G~~------~~~~t~~enl~l~ld~~g~~~-~er~e~~~~--------------------~ErQRv~iArALa-- 125 (825)
.++.+|++ |+++++.+|+.|++...+... .+..+++.+ .|+|||+|||||+
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 24567887 456789999999999655333 323222222 2999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
+|||||||+++||..- +..+...++++.++.|+|.|+||||.+++ +..+|||++|++|+|...|+|.+++..
T Consensus 155 P~vLLLDEPlSaLD~kL------R~~mr~Elk~lq~~~giT~i~VTHDqeEA-l~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 155 PKVLLLDEPLSALDAKL------REQMRKELKELQRELGITFVYVTHDQEEA-LAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred cchhhhcCcccchhHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHH-hhhccceEEccCCceeecCCHHHHhhC
Confidence 8999999999999888 99999999999998999999999999888 578999999999999999999998764
Q ss_pred c
Q 039839 205 T 205 (825)
Q Consensus 205 ~ 205 (825)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 3
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.5e-32 Score=275.72 Aligned_cols=191 Identities=19% Similarity=0.259 Sum_probs=158.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
|+|+++|+++.|.++ +.++++|++.+ ++||+|+||||||||||||||+|.|+ .++..|+
T Consensus 2 ~~i~~~nl~k~yp~~--~~aL~~Vnl~I--~~GE~VaiIG~SGaGKSTLLR~lngl----~d~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGG--HQALKDVNLEI--NQGEMVAIIGPSGAGKSTLLRSLNGL----VDPTSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCC--ceeeeeEeEEe--CCCcEEEEECCCCCcHHHHHHHHhcc----cCCCcceEEecccchhccch
Confidence 589999999999432 78999999999 99999999999999999999999998 5666665
Q ss_pred -----ccceeeEEcCCC------ccchhHHHHH--------HhhCCChhhhhhhh--------------------hHHHH
Q 039839 75 -----SQTTKGIWIAKC------VGIEPFTIAM--------DLEGSDSRERGEDD--------------------TTFEK 115 (825)
Q Consensus 75 -----~q~~~G~~~~~~------t~~enl~l~l--------d~~g~~~~er~e~~--------------------~~~Er 115 (825)
.+..+|++||+. ++.+|+..+. .+.|...++....+ ...|+
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchh
Confidence 146789998865 4466766542 23454433322211 12299
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
|||+|||||+ +++|.|||+++|||+. .+.|++.|++++++.|.|+|++.|+++.+ ..||+|++-|+.|+|
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~------a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA-~~Y~~Riigl~~G~i 226 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPES------AKKVMDILKDINQEDGITVIVNLHQVDLA-KKYADRIIGLKAGRI 226 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhh------HHHHHHHHHHHHHHcCCEEEEEechHHHH-HHHHhhheEecCCcE
Confidence 9999999999 9999999999999999 99999999999998899999999999999 489999999999999
Q ss_pred EEecCcccccCCcccccccccc
Q 039839 193 WDAVPKPQTLKNTPLSEFFNVE 214 (825)
Q Consensus 193 ~~~g~~~e~l~~~~l~d~f~~~ 214 (825)
+.+|++.+ +....+.+.|+-.
T Consensus 227 vfDg~~~e-l~~~~~~~iYg~~ 247 (258)
T COG3638 227 VFDGPASE-LTDEALDEIYGNE 247 (258)
T ss_pred EEeCChhh-hhHHHHHHHhccc
Confidence 99998777 6677777777753
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=3.1e-31 Score=274.65 Aligned_cols=171 Identities=21% Similarity=0.280 Sum_probs=143.2
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
+++++|++|.|+... ...+++++++.+ .+||+++|+||||||||||||+|.|++. |++|.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i--~~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i~g~d~~~l~~ 74 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEI--EAGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLINGKDLTKLSE 74 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEECCEEcCcCCH
Confidence 378999999996422 246899999999 9999999999999999999999999954 45554
Q ss_pred ------ccceeeEEcCC------CccchhHHHHHHhhCCChhhhh---------------------hhhhHHHHHHHHHH
Q 039839 75 ------SQTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG---------------------EDDTTFEKQSALFA 121 (825)
Q Consensus 75 ------~q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~---------------------e~~~~~ErQRv~iA 121 (825)
+...+|++||. .++.||+.+++.+.+....... .....+|||||+||
T Consensus 75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 24568999876 4678999988877665542111 11233499999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|||+ ++||.||||.+||.+. .+.|++++.++.++.|+|+||||||...+. +|||++.+.+|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t------~~~V~~ll~~~~~~~g~tii~VTHd~~lA~--~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKT------AKEVLELLRELNKERGKTIIMVTHDPELAK--YADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH--hCCEEEEEeCCeee
Confidence 9999 9999999999999999 999999999999888999999999999997 89999999999943
No 13
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.7e-31 Score=278.94 Aligned_cols=183 Identities=17% Similarity=0.225 Sum_probs=154.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
|+|.+.++++.|+. ...+.+|++.+ ..||.++++|||||||||||++|+|+. .|+.|+
T Consensus 1 m~i~i~~~~~~~~~---~~a~~di~l~i--~~Ge~vaLlGpSGaGKsTlLRiIAGLe----~p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKRFGA---FGALDDISLDI--KSGELVALLGPSGAGKSTLLRIIAGLE----TPDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhhccc---ccccccceeee--cCCcEEEEECCCCCcHHHHHHHHhCcC----CCCCceEEECCEeccchhc
Confidence 46999999999987 56777999999 999999999999999999999999994 566665
Q ss_pred ---ccceeeEEcC------CCccchhHHHHHHhhCCCh--hhhhhhhh--------------------HHHHHHHHHHHH
Q 039839 75 ---SQTTKGIWIA------KCVGIEPFTIAMDLEGSDS--RERGEDDT--------------------TFEKQSALFALA 123 (825)
Q Consensus 75 ---~q~~~G~~~~------~~t~~enl~l~ld~~g~~~--~er~e~~~--------------------~~ErQRv~iArA 123 (825)
+.+.+|++|| ++++.+|++|++.+..... .++..++. ..|||||++|||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 2356899865 5788999999997763211 12222222 129999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++||||||+++||..- ++.+-..|+++.++.|.|.||||||.+++ ++.||||++|++|+|...|++.+
T Consensus 152 LA~eP~vLLLDEPf~ALDa~v------r~~lr~wLr~~~~~~~~ttvfVTHD~eea-~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKV------RKELRRWLRKLHDRLGVTTVFVTHDQEEA-LELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred hhcCCCeEeecCCchhhhHHH------HHHHHHHHHHHHHhhCceEEEEeCCHHHH-HhhcceEEEecCCeeeeeCCHHH
Confidence 99 9999999999999888 99999999999988899999999999888 57999999999999999999999
Q ss_pred ccCCcc
Q 039839 201 TLKNTP 206 (825)
Q Consensus 201 ~l~~~~ 206 (825)
++....
T Consensus 225 v~~~P~ 230 (345)
T COG1118 225 VYDHPA 230 (345)
T ss_pred HhcCCC
Confidence 876543
No 14
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.4e-31 Score=264.02 Aligned_cols=179 Identities=12% Similarity=0.136 Sum_probs=153.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
||++.+++|+|+. ....+.+++|.. .+|+|+||+|||||||||+||+|+++ +.|++|.
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~a--e~Gei~GlLG~NGAGKTT~LRmiatl----L~P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEA--EEGEITGLLGENGAGKTTLLRMIATL----LIPDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEe--ccceEEEEEcCCCCCchhHHHHHHHh----ccCCCceEEEeecccccChHH
Confidence 5899999999987 356899999999 99999999999999999999999999 5677776
Q ss_pred ccceeeEEc------CCCccchhHHHHHHhhCCChhhhhhhhhH--------------------HHHHHHHHHHHHH---
Q 039839 75 SQTTKGIWI------AKCVGIEPFTIAMDLEGSDSRERGEDDTT--------------------FEKQSALFALAIA--- 125 (825)
Q Consensus 75 ~q~~~G~~~------~~~t~~enl~l~ld~~g~~~~er~e~~~~--------------------~ErQRv~iArALa--- 125 (825)
.+..+|+++ ..+|+.+|+.++..+.|+.+.+...+... .|||||.|||||+
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 135677764 45678999999999988776543322221 1999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
+++++||||+|||.-. ++.+.+.++++..+ |.++||+||+|+++. ..||++++++.|+++..|+++++..
T Consensus 153 ~i~vlDEP~sGLDi~~------~r~~~dfi~q~k~e-gr~viFSSH~m~Eve-alCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 153 SILVLDEPTSGLDIRT------RRKFHDFIKQLKNE-GRAVIFSSHIMQEVE-ALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CeEEEcCCCCCccHHH------HHHHHHHHHHhhcC-CcEEEEecccHHHHH-HhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999 99999999999887 999999999997764 5899999999999999999877643
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=284.94 Aligned_cols=180 Identities=15% Similarity=0.194 Sum_probs=157.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++|.|+.. .+++++++.+ .+||+++|+||||||||||||+|+|+ ..+++|+.
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i--~~Gef~vllGPSGcGKSTlLr~IAGL----e~~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDI--EDGEFVVLLGPSGCGKSTLLRMIAGL----EEPTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEECCEECCCCChh
Confidence 69999999999872 2899999999 99999999999999999999999999 56777761
Q ss_pred cceeeEEcC------CCccchhHHHHHHhhCCChhhhhhhhhH--------------------HHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIA------KCVGIEPFTIAMDLEGSDSRERGEDDTT--------------------FEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~------~~t~~enl~l~ld~~g~~~~er~e~~~~--------------------~ErQRv~iArALa---~ 126 (825)
.+.+|++|| ++++++|+.|++...+.+..+..+++.+ .|||||++||||+ +
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 356788755 5788999999999998876665444332 2999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
++|||||+++||..- +..+...++++.++.|+|+|+||||..++ +..+|||++|++|+|...|+|.+++..
T Consensus 154 v~L~DEPlSnLDa~l------R~~mr~ei~~lh~~l~~T~IYVTHDq~EA-mtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 154 VFLLDEPLSNLDAKL------RVLMRSEIKKLHERLGTTTIYVTHDQVEA-MTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred EEEecCchhHhhHHH------HHHHHHHHHHHHHhcCCcEEEEcCCHHHH-HhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999887 99999999999998899999999999777 468999999999999999999888754
No 16
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=262.63 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=153.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC-cCCCc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD-AFRGR------------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~-~~~G~------------ 74 (825)
+.++++|+++.|+. +.++++|++.+ .++.|+|+|||||||||||||++..+....-+ ..+|+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i--~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDI--PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceec--cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 47999999999997 78999999999 99999999999999999999999887421100 01222
Q ss_pred -----ccceeeEEcCCC-----ccchhHHHHHHhhCCChhhhhhhhh------------------------HHHHHHHHH
Q 039839 75 -----SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDSRERGEDDT------------------------TFEKQSALF 120 (825)
Q Consensus 75 -----~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~er~e~~~------------------------~~ErQRv~i 120 (825)
.++++|++||.+ ++++|+.++..+.|....+..+.++ .+|+||++|
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred CCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 256789999876 4589999999999876532222211 129999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
||||+ +||||||||++|||-. ...|-+++.+|++ .-||++|||+|..+. ..+|++.++..|++++.|+
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIs------T~kIEeLi~eLk~--~yTIviVTHnmqQAa-RvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPIS------TLKIEELITELKK--KYTIVIVTHNMQQAA-RVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchh------HHHHHHHHHHHHh--ccEEEEEeCCHHHHH-HHhHhhhhhcccEEEEEcC
Confidence 99999 9999999999999999 8999999999985 689999999997764 5899999999999999999
Q ss_pred cccccCCcc
Q 039839 198 KPQTLKNTP 206 (825)
Q Consensus 198 ~~e~l~~~~ 206 (825)
..++|.+..
T Consensus 232 T~~iF~~P~ 240 (253)
T COG1117 232 TDKIFTNPK 240 (253)
T ss_pred HHhhhcCcc
Confidence 998886543
No 17
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.8e-30 Score=266.52 Aligned_cols=184 Identities=14% Similarity=0.128 Sum_probs=146.6
Q ss_pred ceEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc------------
Q 039839 8 CCMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------ 74 (825)
++++++|+++.|+... ...++++|++.+ .+||++||+|+||||||||.++|+|+. .|..|.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i--~~Ge~lgivGeSGsGKSTL~r~l~Gl~----~p~~G~I~~~G~~~~~~~ 75 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEI--ERGETLGIVGESGSGKSTLARLLAGLE----KPSSGSILLDGKPLAPKK 75 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEe--cCCCEEEEEcCCCCCHHHHHHHHhccc----CCCCceEEECCcccCccc
Confidence 4799999999997632 235999999999 999999999999999999999999995 444444
Q ss_pred ----ccceeeEEcCCCcc--------chhHHHHHHhhCCChhhhh-------------------hhhhHHHHHHHHHHHH
Q 039839 75 ----SQTTKGIWIAKCVG--------IEPFTIAMDLEGSDSRERG-------------------EDDTTFEKQSALFALA 123 (825)
Q Consensus 75 ----~q~~~G~~~~~~t~--------~enl~l~ld~~g~~~~er~-------------------e~~~~~ErQRv~iArA 123 (825)
....+.++||++.. .+-+.-++...|.+..+.. .....+|+||++||||
T Consensus 76 ~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 76 RAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred cchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 12445678887643 2222223333333322211 1123349999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++||+||||++||... +..|++++.++.++++.|+||||||+..+. ..|||+++|++|+|++.++.++
T Consensus 156 L~~~PklLIlDEptSaLD~si------Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~-~~cdRi~Vm~~G~ivE~~~~~~ 228 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSV------QAQILNLLLELKKERGLTYLFISHDLALVE-HMCDRIAVMDNGQIVEIGPTEE 228 (252)
T ss_pred hccCCCEEEecCchhhhcHHH------HHHHHHHHHHHHHhcCceEEEEeCcHHHHH-HHhhheeeeeCCeEEEeechhh
Confidence 99 9999999999999988 999999999999999999999999999884 6799999999999999999888
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 229 l~~~ 232 (252)
T COG1124 229 LLSH 232 (252)
T ss_pred hhcC
Confidence 7654
No 18
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-30 Score=271.04 Aligned_cols=182 Identities=17% Similarity=0.185 Sum_probs=157.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+++.++++++.|... ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|..|..
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i--~~Ge~~~i~G~nGsGKSTL~~~l~GLl----~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEI--EKGERVLLIGPNGSGKSTLLKLLNGLL----KPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHcCcC----cCCCCEEEECCeeccchhh
Confidence 479999999999763 58999999999 999999999999999999999999994 5555552
Q ss_pred ----cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhhhhH--------------------HHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGEDDTT--------------------FEKQSALFALAI 124 (825)
Q Consensus 76 ----q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~~~~--------------------~ErQRv~iArAL 124 (825)
+.++|++||++ ++.+.++|++...|.+..+..+++.. .|||||+||.+|
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 35689998875 56888999999888887654333222 199999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. ++.+++++++|..+.|+|+|++|||++.+. .+||++++|++|+++.+|++.++
T Consensus 154 a~~P~iliLDEPta~LD~~~------~~~l~~~l~~L~~~~~~tii~~tHd~~~~~-~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKG------RRELLELLKKLKEEGGKTIIIVTHDLELVL-EYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhcCCCeEEEEeCcHHHHH-hhCCEEEEEECCEEeecCCHHHH
Confidence 9 9999999999999999 999999999999877899999999998874 68999999999999999997776
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
+.+
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 654
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=1.2e-29 Score=276.75 Aligned_cols=180 Identities=10% Similarity=0.088 Sum_probs=148.1
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
..+|+++|++|.|+. ..+++++++.+ .+|+++||+||||||||||+++|+|+ ..|++|+.
T Consensus 5 ~~~i~i~~l~k~~~~---~~~l~~vsl~i--~~Gei~gllGpNGaGKSTLl~~l~Gl----~~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 5 VAPIDFRNVEKRYGD---KLVVDGLSFHV--QRGECFGLLGPNGAGKTTTLRMLLGL----THPDAGSISLCGEPVPSRA 75 (306)
T ss_pred CceEEEEeEEEEECC---eEEEecceEEE--eCCcEEEEECCCCCCHHHHHHHHhcC----CCCCceEEEECCEecccch
Confidence 358999999999976 56999999999 99999999999999999999999999 45666641
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH-
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA- 125 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa- 125 (825)
+..+||+++. .++.+|+.+.....|.+..+..+.. ..+||||++||+||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 2457888654 4667888766555554432211111 122999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++|||||||+|||+.. ++.++++++++.++ |+|||++||+++.+. .+||++++|++|+++..|++.++..
T Consensus 156 ~P~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~till~sH~l~e~~-~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQA------RHLMWERLRSLLAR-GKTILLTTHFMEEAE-RLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999765 999999999998774 5899999999999999998776543
No 20
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=6.4e-30 Score=254.42 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=151.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
||+++|++|.|+.. ..++.++++.+ .+||++-|+||||||||||||+|++. ..|+.|.
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i--~~Gef~fl~GpSGAGKSTllkLi~~~----e~pt~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHI--PKGEFVFLTGPSGAGKSTLLKLIYGE----ERPTRGKILVNGHDLSRLKGR 72 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEee--cCceEEEEECCCCCCHHHHHHHHHhh----hcCCCceEEECCeeccccccc
Confidence 58999999999764 67999999999 99999999999999999999999998 4556665
Q ss_pred ----ccceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhhHH--------------------HHHHHHHHHHH
Q 039839 75 ----SQTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDTTF--------------------EKQSALFALAI 124 (825)
Q Consensus 75 ----~q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~~~--------------------ErQRv~iArAL 124 (825)
.++.+|++||. .++++|+++++.+.|...++..+++... |||||+||||+
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 24678999875 4779999999999999887766654332 99999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
+ +|||.||||.+||++. ...|++++.++... |+|||++|||.+.+. .+-.|++.+++|+++.+..
T Consensus 153 V~~P~vLlADEPTGNLDp~~------s~~im~lfeeinr~-GtTVl~ATHd~~lv~-~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDL------SWEIMRLFEEINRL-GTTVLMATHDLELVN-RMRHRVLALEDGRLVRDES 220 (223)
T ss_pred ccCCCeEeecCCCCCCChHH------HHHHHHHHHHHhhc-CcEEEEEeccHHHHH-hccCcEEEEeCCEEEeccc
Confidence 9 9999999999999999 99999999999876 999999999998875 4677999999999987654
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-29 Score=281.67 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=151.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+.
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTI--KQGTMVTLLGPSGCGKTTVLRLVAGL----EKPTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHHCC----CCCCceEEEECCEECCCCCHH
Confidence 7999999999976 56899999999 99999999999999999999999999 45666651
Q ss_pred cceeeEEcC------CCccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIA------KCVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~------~~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa---~ 126 (825)
+..+|+++| +.++.+|+.+++...+.+..+..+.+ ..+|||||+|||||+ +
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 246788765 45778999998776554433322221 122999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
+||||||+++||... +..+.+.++++.++.|+|+|+||||.+++ +.+||++++|++|+|...|++.+++..
T Consensus 157 lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~e~-~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 157 VLLFDEPLSNLDANL------RRSMREKIRELQQQFNITSLYVTHDQSEA-FAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999 99999999999876799999999999887 358999999999999999998877653
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=1.2e-29 Score=280.46 Aligned_cols=183 Identities=11% Similarity=0.159 Sum_probs=150.0
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i--~~Gei~gIiG~sGaGKSTLlr~I~gl~----~p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHV--PAGQIYGVIGASGAGKSTLIRCVNLLE----RPTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCcCCH
Confidence 489999999995311 146899999999 999999999999999999999999994 4555541
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALA 123 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArA 123 (825)
+..+|+++|+ .++.+|+.+++...+.+..+..+.+ ..+|||||+||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 2357888765 4668888887765554433222221 1229999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++||+||||++||+.. +..++++++++.++.|.|||+||||++.+. .+||++++|++|+|++.|++.+
T Consensus 155 L~~~P~iLLlDEPts~LD~~t------~~~i~~lL~~l~~~~g~tiiliTH~~~~v~-~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPAT------TQSILELLKEINRRLGLTILLITHEMDVVK-RICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEEcCHHH
Confidence 99 9999999999999999 999999999998766999999999998874 5899999999999999998877
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 228 v~~~ 231 (343)
T TIGR02314 228 IFSH 231 (343)
T ss_pred HHcC
Confidence 7643
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-29 Score=280.58 Aligned_cols=180 Identities=14% Similarity=0.168 Sum_probs=150.4
Q ss_pred eEEEEEeEEEe-cCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEF-NVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y-~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+|+++|+++.| +. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 3 ~l~i~~l~~~~~~~---~~~l~~vsl~i--~~Ge~~~llG~sGsGKSTLLr~iaGl~----~p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYDGK---TQVIKGIDLDV--ADGEFIVLVGPSGCGKSTLLRMVAGLE----RITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeCCC---CEEEeeeeEEE--cCCCEEEEECCCCCcHHHHHHHHHCCC----CCCceEEEECCEECCCCCH
Confidence 69999999999 55 56899999999 999999999999999999999999994 5566641
Q ss_pred -cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH---
Q 039839 76 -QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA--- 125 (825)
Q Consensus 76 -q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa--- 125 (825)
+..+||++|. .++.+|+.+++...+.+..+..+.+ ..+|||||+|||||+
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2457888664 5778999988765554433222111 122999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
++|||||||++||... +..+.+.++++.++.|+|+|+||||++.+ +.+||++++|++|+|+..|++.+++.+
T Consensus 154 ~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 154 AVFLFDEPLSNLDAKL------RVQMRLEIQRLHRRLKTTSLYVTHDQVEA-MTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999 99999999999876699999999999877 368999999999999999998887654
No 24
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.7e-29 Score=273.81 Aligned_cols=177 Identities=15% Similarity=0.182 Sum_probs=148.7
Q ss_pred eEEEEEeEEEec-CccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFN-VDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~-~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++++.|++|.|+ . ..+++++++.+ .+|+++||+||||||||||||+|+|+ ..|++|+.
T Consensus 4 ~i~~~~l~k~~~~~---~~~l~~vs~~i--~~Gei~gllG~NGAGKTTllk~l~gl----~~p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKYGGD---KTALDGVSFEV--EPGEIFGLLGPNGAGKTTLLKILAGL----LKPTSGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEeCCC---CEEEeceeEEE--cCCeEEEEECCCCCCHHHHHHHHhCC----cCCCceEEEEcCEeCccCHH
Confidence 689999999998 5 67999999999 99999999999999999999999999 55666761
Q ss_pred --cceeeEEcC------CCccchhHHHHHHhhCCCh---hhhhh-----------------hhhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIA------KCVGIEPFTIAMDLEGSDS---RERGE-----------------DDTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~------~~t~~enl~l~ld~~g~~~---~er~e-----------------~~~~~ErQRv~iArALa-- 125 (825)
...+||+++ ..|+.+++.+...+.+... .++.+ ....+||||+.||+||+
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 235788854 4577889988888877542 11111 11223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++|||||||+|||+.. +..++++|+++.++.|+|||++||.++.+. ..||+|+++++|+++..|++.+.
T Consensus 155 P~lliLDEPt~GLDp~~------~~~~~~~l~~l~~~g~~tvlissH~l~e~~-~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 155 PELLILDEPTSGLDPES------RREIWELLRELAKEGGVTILLSTHILEEAE-ELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred CCEEEECCCCcCCCHHH------HHHHHHHHHHHHhCCCcEEEEeCCcHHHHH-HhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999 999999999999874489999999997774 57999999999999999976653
No 25
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.2e-30 Score=266.23 Aligned_cols=188 Identities=16% Similarity=0.209 Sum_probs=153.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+++++++++|+||+ -.+++++++.+ .+|++++||||||||||||+|+|.|. +.|+.|+.
T Consensus 3 ~lL~v~~l~k~FGG---l~Al~~Vsl~v--~~Gei~~LIGPNGAGKTTlfNlitG~----~~P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTAVNDVSLEV--RPGEIVGLIGPNGAGKTTLFNLITGF----YKPSSGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceeecCC---EEEEeceeEEE--cCCeEEEEECCCCCCceeeeeeeccc----ccCCCceEEECCcccCCCCH
Confidence 47899999999998 67999999999 99999999999999999999999999 56776661
Q ss_pred --cceeeE--------EcCCCccchhHHHHHHhh-------CCCh-----hhhhhhhhH--------------------H
Q 039839 76 --QTTKGI--------WIAKCVGIEPFTIAMDLE-------GSDS-----RERGEDDTT--------------------F 113 (825)
Q Consensus 76 --q~~~G~--------~~~~~t~~enl~l~ld~~-------g~~~-----~er~e~~~~--------------------~ 113 (825)
..+.|+ .|+.+|+.||+....... +... ++..+.+.. .
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 112233 377889999998874422 1111 111111111 1
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
+|+|+.|||||+ ++||||||.+||.++. ...+.++|+++.++.|+||++|.|||+.+ +.+||||++|+.|
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e------~~~l~~~i~~i~~~~g~tillIEHdM~~V-m~l~dri~Vl~~G 226 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEE------TEELAELIRELRDRGGVTILLIEHDMKLV-MGLADRIVVLNYG 226 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHH------HHHHHHHHHHHHhcCCcEEEEEEeccHHH-hhhccEEEeccCC
Confidence 999999999999 9999999999999888 99999999999987789999999999988 5799999999999
Q ss_pred eEEEecCcccccCCccccccc
Q 039839 191 KIWDAVPKPQTLKNTPLSEFF 211 (825)
Q Consensus 191 kI~~~g~~~e~l~~~~l~d~f 211 (825)
+++++|+|+++.++....+.|
T Consensus 227 ~~IAeG~P~eV~~dp~VieAY 247 (250)
T COG0411 227 EVIAEGTPEEVRNNPRVIEAY 247 (250)
T ss_pred cCcccCCHHHHhcCHHhHHHh
Confidence 999999999998877654433
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=2.4e-29 Score=279.17 Aligned_cols=180 Identities=15% Similarity=0.170 Sum_probs=150.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~GpsGsGKSTLLr~iaGl~----~p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSV--KKGEFVCLLGPSGCGKTTLLRIIAGLE----RQTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHCCC----CCCceEEEECCEECCCCCHH
Confidence 7999999999976 56899999999 999999999999999999999999994 5555641
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa---~ 126 (825)
+..+||++|+ .++.+|+.+++...+.+..+..+.+ ..+|||||+|||||+ +
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2457888654 5778999988765554433222221 223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
+||||||+++||... +..+.+.|+++.++.|+|+|+||||++++ +.+||++++|++|+|+..|++.+++..
T Consensus 155 llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~~~tvi~vTHd~~ea-~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 155 LLLLDEPLSALDARV------REHLRTEIRQLQRRLGVTTIMVTHDQEEA-LSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999998 99999999999877799999999999877 358999999999999999998887754
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=4e-29 Score=276.10 Aligned_cols=179 Identities=12% Similarity=0.136 Sum_probs=146.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|++|.|+. ..+++++++.+ .+|+++||+|||||||||||++|+|+ +.|.+|+.
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i--~~Gei~gLlGpNGaGKSTLl~~L~Gl----~~p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTV--ASGECFGLLGPNGAGKSTIARMILGM----TSPDAGKITVLGVPVPARAR 110 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHcC----CCCCceEEEECCEECCcchH
Confidence 47999999999986 56999999999 99999999999999999999999999 45566641
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa-- 125 (825)
+..+||+++. .++.+|+.+.....+.+..+..+ ....+||||++||+||+
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 2457888654 45577777654444433221111 11223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++|||||||+|||+.. +..++++++++.++ |+|||++||+++.+. .+||+++++++|+|+..|++.++..
T Consensus 191 P~lLiLDEPt~gLD~~~------r~~l~~~l~~l~~~-g~tilisSH~l~e~~-~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 191 PQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAE-RLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999 99999999999875 999999999998774 5899999999999999998777643
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=5e-29 Score=278.49 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=150.9
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~LlGpsGsGKSTLLr~IaGl~----~p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTI--NNGEFLTLLGPSGCGKTTVLRLIAGFE----TPDSGRIMLDGQDITHVP 82 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEE--eCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCCCC
Confidence 357999999999976 56899999999 999999999999999999999999994 5555641
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa-- 125 (825)
+..+||++|. .++.+|+.+.+...+.+..+..+.+ ..+|||||+|||||+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3457887654 5778999888765554433221111 122999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
++||||||+++||... +..+.+.|+++.++.|+|+|+||||.+++ +.+||++++|++|+|...|++.+++..
T Consensus 163 P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tiI~vTHd~~ea-~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 163 PKVLLLDESLSALDYKL------RKQMQNELKALQRKLGITFVFVTHDQEEA-LTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred CCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999998 99999999999876799999999999877 358999999999999999998877654
No 29
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.3e-29 Score=277.94 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=151.3
Q ss_pred CcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-----------
Q 039839 6 ECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR----------- 74 (825)
Q Consensus 6 ~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~----------- 74 (825)
+.++|+++|+++.|++ ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|..|+
T Consensus 16 ~~~~l~l~~v~~~~~~---~~~l~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl~----~p~~G~I~i~g~~i~~~ 86 (377)
T PRK11607 16 LTPLLEIRNLTKSFDG---QHAVDDVSLTI--YKGEIFALLGASGCGKSTLLRMLAGFE----QPTAGQIMLDGVDLSHV 86 (377)
T ss_pred CCceEEEEeEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCCC
Confidence 4557999999999976 46899999999 999999999999999999999999994 455554
Q ss_pred --ccceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH-
Q 039839 75 --SQTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA- 125 (825)
Q Consensus 75 --~q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa- 125 (825)
.+..+||++|+ .++.+|+.+.+...+.+..+..+.+ ..+|||||+|||||+
T Consensus 87 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 87 PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 12457888654 5778999888765544433222221 122999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++||||||+++||... +..+.+.++++.++.|.|+|+||||.+++ +.+||++++|++|+|...|++.+++.
T Consensus 167 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKL------RDRMQLEVVDILERVGVTCVMVTHDQEEA-MTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999 99999999998876699999999999877 35899999999999999999888765
Q ss_pred C
Q 039839 204 N 204 (825)
Q Consensus 204 ~ 204 (825)
.
T Consensus 240 ~ 240 (377)
T PRK11607 240 H 240 (377)
T ss_pred C
Confidence 4
No 30
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=6.3e-29 Score=275.86 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=148.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
|+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+.
T Consensus 1 ~~L~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl----~~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 1 MSIEIANIKKSFGR---TQVLNDISLDI--PSGQMVALLGPSGSGKTTLLRIIAGL----EHQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred CEEEEEEEEEEeCC---eEEEEEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEECCEECCCCCH
Confidence 46999999999976 56899999999 99999999999999999999999999 45566651
Q ss_pred -cceeeEEcCC------CccchhHHHHHHhh----CCChhhhhhhh--------------------hHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAK------CVGIEPFTIAMDLE----GSDSRERGEDD--------------------TTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~------~t~~enl~l~ld~~----g~~~~er~e~~--------------------~~~ErQRv~iArAL 124 (825)
+..+||++|. .++.+|+.+.+... +.+..+..+.+ ...|||||+|||||
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 2357888664 46788888876532 22222211111 12299999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+. .+||++++|++|+|+..|++.++
T Consensus 152 ~~~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tii~vTHd~~ea~-~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQV------RKELRRWLRQLHEELKFTSVFVTHDQEEAM-EVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred hcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 9 9999999999999999 999999999998767899999999998873 68999999999999999998887
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
+..
T Consensus 225 ~~~ 227 (353)
T PRK10851 225 WRE 227 (353)
T ss_pred HhC
Confidence 654
No 31
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=8.3e-29 Score=260.03 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=142.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
|+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 1 MSIEVRNVSKRFGD---FVALDDVSLDI--PSGELVALLGPSGSGKTTLLRLIAGLE----RPDSGTILFGGEDATDVPV 71 (239)
T ss_pred CEEEEEeEEEEECC---EEeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCCc
Confidence 36999999999976 56999999999 999999999999999999999999994 4555541
Q ss_pred -cceeeEEcCC------CccchhHHHHHHhhCC----Chhhhhh--------------------hhhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAK------CVGIEPFTIAMDLEGS----DSRERGE--------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~------~t~~enl~l~ld~~g~----~~~er~e--------------------~~~~~ErQRv~iArAL 124 (825)
...+||++|. .++.+|+.+.....+. ...+..+ ....+|+||++||+||
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 1246777654 3556777665432221 1111001 1122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||++. ++.+.+++.++.++.|+|||+||||++.+. ..||++++|++|+++..|++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKV------RKELRRWLRRLHDELHVTTVFVTHDQEEAL-EVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEEECCeEEEecCHHHH
Confidence 9 9999999999999999 999999999998655899999999997763 57999999999999999887665
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
+.
T Consensus 225 ~~ 226 (239)
T cd03296 225 YD 226 (239)
T ss_pred hc
Confidence 43
No 32
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.7e-29 Score=251.83 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=152.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+..|++++..+ +.+++++++.. ..||+++|+||||||||||||.|+|. +.|.+|+.
T Consensus 1 mi~a~nls~~~~G---r~ll~~vsl~~--~pGev~ailGPNGAGKSTlLk~LsGe----l~p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 1 MIRAENLSYSLAG---RRLLDGVSLDL--RPGEVLAILGPNGAGKSTLLKALSGE----LSPDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred CeeeeeeEEEeec---ceeccCcceec--cCCcEEEEECCCCccHHHHHHHhhCc----cCCCCCeEeeCCcChhhCCHH
Confidence 5899999999977 68999999999 99999999999999999999999998 77887762
Q ss_pred --cceeeEEcCCCc------cchhHHHHHHhhCCChh--hhhhhh--------------------hHHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKCV------GIEPFTIAMDLEGSDSR--ERGEDD--------------------TTFEKQSALFALAIA 125 (825)
Q Consensus 76 --q~~~G~~~~~~t------~~enl~l~ld~~g~~~~--er~e~~--------------------~~~ErQRv~iArALa 125 (825)
....+++.|+.+ +.+-+.++.--.+.... +..+.. ...|||||.|||.|+
T Consensus 72 ~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHH
Confidence 112233333321 12222222111111111 111000 112999999999999
Q ss_pred ---------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 126 ---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 126 ---------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
.+|+|||||++||... +..++++.++++++ |..|+.|-||++.+. .||||+++|.+||+++.|
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~H------Q~~tl~laR~la~~-g~~V~~VLHDLNLAA-~YaDrivll~~Grv~a~g 223 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAH------QHHTLRLARQLARE-GGAVLAVLHDLNLAA-QYADRIVLLHQGRVIASG 223 (259)
T ss_pred HccCCCCCCceEEecCCccccchHH------HHHHHHHHHHHHhc-CCcEEEEEccchHHH-HhhheeeeeeCCeEeecC
Confidence 4899999999999999 99999999999987 899999999999985 699999999999999999
Q ss_pred CcccccCCcccccccccccccc
Q 039839 197 PKPQTLKNTPLSEFFNVEVTAL 218 (825)
Q Consensus 197 ~~~e~l~~~~l~d~f~~~~~~l 218 (825)
++.+++..+.++..|+.+....
T Consensus 224 ~p~~vlt~Etl~~vyg~~~~V~ 245 (259)
T COG4559 224 SPQDVLTDETLERVYGADIRVG 245 (259)
T ss_pred CHHHhcCHHHHHHHhCCceeee
Confidence 9999999999999999876543
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=1.2e-28 Score=274.31 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=151.1
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCC--Ccc---------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFR--GRS--------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~--G~~--------- 75 (825)
|-.|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+ |+.
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~----~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEI--EAGELLALIGKSGCGKTTLLRAIAGFV----KAAGLTGRIAIADRDLTH 73 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCCEEEEECCEECCC
Confidence 346999999999976 56899999999 999999999999999999999999994 4555 541
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA 125 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa 125 (825)
+..+|+++|+ .++.+|+.+.+...+.+..+..+.+ ...|||||+|||||+
T Consensus 74 ~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred CCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 2457887654 5778999988765554433222211 122999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCC-CcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-KTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~-g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++||||||+++||+.. +..+.+.|+++.++. |+|+|+||||++++ +.+||++++|++|+++..|++.++
T Consensus 154 ~~P~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~~g~til~vTHd~~ea-~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANI------RANMREEIAALHEELPELTILCVTHDQDDA-LTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred cCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhCCCCEEEEEeCCHHHH-HHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999 999999999998765 79999999999877 358999999999999999998887
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
+..
T Consensus 227 ~~~ 229 (362)
T TIGR03258 227 YDA 229 (362)
T ss_pred HhC
Confidence 654
No 34
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-28 Score=263.07 Aligned_cols=176 Identities=17% Similarity=0.199 Sum_probs=142.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+.. ..+++++++.+ .+|++++|+||||||||||+++|+|+ +.|.+|+.
T Consensus 3 ~~l~~~~l~~~~~~~--~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 3 NIIEVEDLHFRYKDG--TKALKGLSLSI--PEGSKTALLGPNGAGKSTLLLHLNGI----YLPQRGRVKVMGREVNAENE 74 (274)
T ss_pred ceEEEEEEEEEeCCC--CeeeeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhcC----CCCCceEEEECCEECCCCCH
Confidence 479999999999531 46899999999 99999999999999999999999999 45555641
Q ss_pred ---cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ---q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa 125 (825)
...+||++|.. ++.+|+.+.....+....+..+. ...+|+||++||+||+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 23578887763 55777776544333332111111 1223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
++|||||||++||+.. +..++++++++.++ |+|||++|||++.+. .+||++++|++|+++..|+++
T Consensus 155 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tili~tH~~~~~~-~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRG------QETLMEILDRLHNQ-GKTVIVATHDVDLAA-EWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred cCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999 99999999999876 899999999998773 589999999999999998754
No 35
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=2.2e-28 Score=266.26 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=143.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~l~G~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTI--ARGECFGLLGPNGAGKSTIARMLLGMI----SPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECcccHH
Confidence 57999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa-- 125 (825)
+..+||++|. .++.+|+.+.....+.+..+..+ ....+||||++||+||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 2357887654 35567776544333332211111 11223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||+|||+.. +..++++++++.++ |+|||++|||++.+. .+||+++++++|+++..|++.++.
T Consensus 154 p~lllLDEPt~gLD~~~------~~~l~~~l~~~~~~-g~til~~sH~~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAE-RLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred CCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999 99999999999875 999999999998773 589999999999999999877654
No 36
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-28 Score=266.95 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=145.3
Q ss_pred eEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
+|+++|+++.|+... -..+++++++.+ .+|++++|+||||||||||+++|+|+.. |..|+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i--~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~----p~~G~i~~~g~~~~~~~ 75 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEI--NQGEFIAIIGQTGSGKTTFIEHLNALLL----PDTGTIEWIFKDEKNKK 75 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEE--eCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEEeceeccccc
Confidence 599999999996421 125899999999 9999999999999999999999999953 444431
Q ss_pred ----------------------------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhh------------
Q 039839 76 ----------------------------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGE------------ 108 (825)
Q Consensus 76 ----------------------------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e------------ 108 (825)
...+||++|+. ++.+|+.+.....+.+..+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred ccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 23468888753 5567777665444433222111
Q ss_pred ---------hhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCc
Q 039839 109 ---------DDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT 176 (825)
Q Consensus 109 ---------~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a 176 (825)
.....||||++||+||+ ++|||||||++||+.. +..+.+++.++.++ |+|||+||||++.+
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivtHd~~~~ 228 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG------VKEILEIFDNLNKQ-GKTIILVTHDLDNV 228 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeeCHHHH
Confidence 11223999999999999 9999999999999999 99999999999865 99999999999876
Q ss_pred cccccCcEEEEeCCeEEEecCcccccCCc
Q 039839 177 PLEYLEPILREDIQKIWDAVPKPQTLKNT 205 (825)
Q Consensus 177 ~l~~~drvlvl~~GkI~~~g~~~e~l~~~ 205 (825)
. .+||++++|++|+|+..|++.+++...
T Consensus 229 ~-~~adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 229 L-EWTKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred H-HhCCEEEEEECCEEEEECCHHHHhcCH
Confidence 3 589999999999999999877766543
No 37
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=2.4e-28 Score=254.84 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=139.7
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSV--KQGEIVGLLGPNGAGKTTTFYMIVGLV----KPDSGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEe--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccCCHhH
Confidence 478999999976 56899999999 999999999999999999999999994 4555531
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa-- 125 (825)
+..+|++++. .++.+|+.+.....+....+..+. ...+||||++||+|++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1246777654 355677766543333221111111 1223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++|||||||++||++. +..+.++++++.++ |+|+|++|||++.+. ..||+++++++|+++..|+.++...
T Consensus 152 p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIA------VQDIQKIIKILKDR-GIGVLITDHNVRETL-SITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999 99999999999865 899999999997663 5899999999999999887666544
No 38
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-28 Score=273.59 Aligned_cols=179 Identities=15% Similarity=0.188 Sum_probs=147.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i--~~Ge~~~l~G~nGsGKSTLL~~iaGl~----~p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDI--HEGEFVVFVGPSGCGKSTLLRMIAGLE----DITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCCCCHh
Confidence 5999999999976 56899999999 999999999999999999999999994 4555641
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~ 126 (825)
...+||++|. .++.+|+.+.+...+.+..+..+. ...+|||||+|||||+ +
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2347888664 467888888765444332221111 1223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
+|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+. .+||++++|++|+|...|++.+++.
T Consensus 154 lLLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~-~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 154 VFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAM-TLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEEeCCcccCCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 999999999998766899999999998763 5899999999999999998877654
No 39
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.4e-28 Score=255.75 Aligned_cols=177 Identities=17% Similarity=0.130 Sum_probs=139.7
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDV--RRGEILAIIGPSGSGKSTLLRLIVGLL----RPDSGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccChhh
Confidence 478999999975 56899999999 999999999999999999999999994 4455531
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhh-CCChhhhhh--------------------hhhHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLE-GSDSRERGE--------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~-g~~~~er~e--------------------~~~~~ErQRv~iArAL 124 (825)
+..+|+++|. .++.+|+.+..... +.+..+..+ ....+||||++||+|+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 1246777664 35677776653321 122111111 1123399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. +..+++.++++.++.|+|||+||||++.+. .+||++++|++|+++..|++.++
T Consensus 152 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIA------SGVIDDLIRSLKKELGLTSIMVTHDLDTAF-AIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred hcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHH-HhcCEEEEEECCeEEEecCHHHH
Confidence 9 9999999999999999 999999999998645899999999998763 57999999999999999876655
Q ss_pred c
Q 039839 202 L 202 (825)
Q Consensus 202 l 202 (825)
.
T Consensus 225 ~ 225 (235)
T cd03261 225 R 225 (235)
T ss_pred c
Confidence 4
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-28 Score=251.17 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=135.2
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+. +
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTV--EPGEFLALLGPSGCGKTTLLRLIAGLE----RPDSGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcCcCchhh
Confidence 478999999976 56899999999 999999999999999999999999994 4555541 1
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCCChhhhh--------------------hhhhHHHHHHHHHHHHHH---HH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG--------------------EDDTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~--------------------e~~~~~ErQRv~iArALa---~V 127 (825)
..+|++++. .++.+|+.+.....+....... .....+||||++||+||+ ++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 346777664 3556777655433222211110 111223999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|||||||++||++. +..+++.+.++.++.|+|||++|||++.+. .+||+++++++|+++..|
T Consensus 152 lllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKL------REELREELKELQRELGITTIYVTHDQEEAL-ALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHH-HhcCEEEEEECCEEEecC
Confidence 99999999999999 999999999997655899999999997763 589999999999997654
No 41
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-28 Score=264.38 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=145.5
Q ss_pred ceEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-----------
Q 039839 8 CCMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR----------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~----------- 74 (825)
|.|+++|+++.|+... -..+++++++.+ .+|++++|+||||||||||+++|+|+. .|..|+
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~L~Gl~----~p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEF--EQGKYYAIVGQTGSGKSTLIQNINALL----KPTTGTVTVDDITITHK 74 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEECccc
Confidence 3599999999996321 135999999999 999999999999999999999999994 455553
Q ss_pred --------ccceeeEEcCCC-------ccchhHHHHHHhhCCChhhhh---------------------hhhhHHHHHHH
Q 039839 75 --------SQTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERG---------------------EDDTTFEKQSA 118 (825)
Q Consensus 75 --------~q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~---------------------e~~~~~ErQRv 118 (825)
....+||++|.. ++.+|+.+.....+.+..+.. .....+||||+
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred cccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 123578988863 456777665433333221111 11223399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+||+ ++|||||||++||+.. +..+.++++++.++.|+|||+||||++.+. .+||++++|++|+|+..
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~-~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQS------KRQVMRLLKSLQTDENKTIILVSHDMNEVA-RYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEEECCEEEEE
Confidence 9999999 9999999999999999 999999999997655899999999998763 58999999999999999
Q ss_pred cCcccccCC
Q 039839 196 VPKPQTLKN 204 (825)
Q Consensus 196 g~~~e~l~~ 204 (825)
|++.+++..
T Consensus 228 g~~~~~~~~ 236 (286)
T PRK13646 228 TSPKELFKD 236 (286)
T ss_pred CCHHHHHhC
Confidence 987776654
No 42
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-28 Score=262.82 Aligned_cols=183 Identities=13% Similarity=0.133 Sum_probs=145.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+......+++++++.+ .+|++++|+||||||||||+++|+|+ +.|..|+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHV--KQGEWLSIIGHNGSGKSTTVRLIDGL----LEAESGQIIIDGDLLTEENV 76 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCcEEEECCEECCcCcH
Confidence 4799999999996421135899999999 99999999999999999999999999 45566641
Q ss_pred ---cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA 125 (825)
Q Consensus 76 ---q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa 125 (825)
...+|++++.. ++.+|+.+.....|.+..+..+.+ ..+|+||++||+||+
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 23578887753 456777765544343332211111 122999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||+|||+.. +..++++++++.++.|+|||+||||++.+. .||+++++++|++...|++.+++
T Consensus 157 ~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tilivtH~~~~~~--~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEG------RLELIKTIKGIRDDYQMTVISITHDLDEVA--LSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred cCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999 999999999998755899999999997764 69999999999999999877665
Q ss_pred CC
Q 039839 203 KN 204 (825)
Q Consensus 203 ~~ 204 (825)
..
T Consensus 229 ~~ 230 (279)
T PRK13650 229 SR 230 (279)
T ss_pred cC
Confidence 44
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.6e-28 Score=252.02 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=138.6
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRV--RRGEIFGLLGPNGAGKTTTIKMLTTLL----KPTSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEecCcChHHH
Confidence 578999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~ 126 (825)
...+||+++. .++.+|+.+.....+.+..+..+. ...+||||++||+|++ +
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1346777665 355677766544434322111111 1223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
+|||||||++||++. +..+.+.+.++.++.|+|+|++|||++.+. ..||+++++++|+++..+++.
T Consensus 152 llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~-~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 152 VLFLDEPTIGLDPQT------RAHVWEYIEKLKEEFGMTILLTTHYMEEAE-QLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred EEEEcCCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEeCCEEEEeCChH
Confidence 999999999999999 999999999998755899999999998774 579999999999999887644
No 44
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-28 Score=270.24 Aligned_cols=182 Identities=13% Similarity=0.205 Sum_probs=146.0
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|++++|+... -..+++++++.+ .+|++++|+||||||||||+|+|+|+. .|.+|+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i--~~Gei~~iiG~nGsGKSTLlk~L~Gl~----~p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHI--PAGEIFGVIGASGAGKSTLIRCINLLE----RPTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCcCCH
Confidence 489999999997211 146899999999 999999999999999999999999994 4555541
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALA 123 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArA 123 (825)
+..+||++|. .++.+|+.+.....+....+..+. ...+||||++||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 2357888765 456788877655444332211111 12239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++|||||||++||+.. +..++++|+++.++.|+|+|+||||++.+. .+||++++|++|+++..|++.+
T Consensus 155 L~~~p~iLlLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiilvtH~~~~i~-~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPAT------TRSILELLKDINRELGLTIVLITHEMDVVK-RICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEEcCHHH
Confidence 99 9999999999999999 999999999998756899999999998773 5899999999999999998776
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
++.
T Consensus 228 ~~~ 230 (343)
T PRK11153 228 VFS 230 (343)
T ss_pred HHh
Confidence 654
No 45
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.1e-28 Score=263.11 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=145.1
Q ss_pred eEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
+|+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i--~~Ge~~~i~G~nGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEI--EDGEFVGLIGHTGSGKSTLIQHLNGLL----KPTSGKIIIDGVDITDKK 75 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCccEEEECCEECCCcC
Confidence 599999999996421 135899999999 999999999999999999999999994 4555531
Q ss_pred ------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhh----------------------hhhhhHHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRER----------------------GEDDTTFEKQSALF 120 (825)
Q Consensus 76 ------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er----------------------~e~~~~~ErQRv~i 120 (825)
+..+||++|.. ++.+|+.+.....+.+..+. ......+||||++|
T Consensus 76 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 76 VKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred ccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 23578887753 45677766543333322211 11123349999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|+||+ ++|||||||+|||+.. +..+++++.++.++.|+|||+||||++.+. .+||+++++++|+++..|+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~drv~~l~~G~i~~~g~ 228 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKG------RDEILNKIKELHKEYNMTIILVSHSMEDVA-KLADRIIVMNKGKCELQGT 228 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEECC
Confidence 99999 9999999999999999 999999999998755899999999998763 4899999999999999998
Q ss_pred cccccCC
Q 039839 198 KPQTLKN 204 (825)
Q Consensus 198 ~~e~l~~ 204 (825)
+.+++..
T Consensus 229 ~~~~~~~ 235 (287)
T PRK13637 229 PREVFKE 235 (287)
T ss_pred HHHHHhC
Confidence 7776543
No 46
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3e-28 Score=263.42 Aligned_cols=182 Identities=12% Similarity=0.143 Sum_probs=144.9
Q ss_pred eEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
||+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i--~~Ge~v~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 74 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEV--KKGSYTALIGHTGSGKSTLLQHLNGLL----QPTEGKVTVGDIVVSSTS 74 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEE--cCCCEEEEECCCCChHHHHHHHHhcCC----CCCCcEEEECCEECcccc
Confidence 489999999996421 125899999999 999999999999999999999999994 4555531
Q ss_pred --------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhh---------------------hhhHHHHHHHH
Q 039839 76 --------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGE---------------------DDTTFEKQSAL 119 (825)
Q Consensus 76 --------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e---------------------~~~~~ErQRv~ 119 (825)
+..+|+++|+. ++.+|+.+.....+.+..+..+ ....+||||++
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 75 KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred ccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence 23478888753 5567777665443433221111 11223999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+||+ ++|||||||++||+.. +..+.+++.++.++ |.|||+||||++.+. .+||+|++|++|+++..|
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~vtHd~~~~~-~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKA------RIEMMQLFESIHQS-GQTVVLVTHLMDDVA-DYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHH-HhCCEEEEEECCEEEEEC
Confidence 999999 9999999999999999 99999999999865 899999999998773 589999999999999999
Q ss_pred CcccccCC
Q 039839 197 PKPQTLKN 204 (825)
Q Consensus 197 ~~~e~l~~ 204 (825)
++.+++..
T Consensus 227 ~~~~~~~~ 234 (288)
T PRK13643 227 TPSDVFQE 234 (288)
T ss_pred CHHHHHcC
Confidence 87776543
No 47
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.95 E-value=2.7e-28 Score=274.43 Aligned_cols=189 Identities=17% Similarity=0.208 Sum_probs=152.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+ +.|.+|+.
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i--~~Geiv~liGpNGaGKSTLLk~LaGl----l~p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSV--REGSLVGLVGPNGAGKTTLLRAINGT----LTPTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEE--CCCCEEEEECCCCchHHHHHHHHhcC----CCCCCcEEEECCEEcCcCCHH
Confidence 7999999999986 67999999999 99999999999999999999999999 45566641
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhh----CC-Ch--hhhhhh-----------------hhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLE----GS-DS--RERGED-----------------DTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~----g~-~~--~er~e~-----------------~~~~ErQRv~iArA 123 (825)
...+|++++. .++.+|+.+..... +. .. .++.+. ...+||||++||||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 2357888654 34566665532111 10 11 111111 12239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++|||||||++||+.. +..++++|+++.++ |+|||++|||++.+. .+||++++|++|+++..|++++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~------~~~l~~lL~~l~~~-g~TIIivsHdl~~~~-~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINH------QVRTLELVRRLVDD-GKTAVAAIHDLDLAA-RYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred HHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHHH-HhCCEEEEEECCEEEEecCHHH
Confidence 99 9999999999999999 99999999999864 899999999998874 5899999999999999999988
Q ss_pred ccCCcccccccccc
Q 039839 201 TLKNTPLSEFFNVE 214 (825)
Q Consensus 201 ~l~~~~l~d~f~~~ 214 (825)
++....+.+.|+..
T Consensus 226 v~~~~~l~~~~~~~ 239 (402)
T PRK09536 226 VLTADTLRAAFDAR 239 (402)
T ss_pred HhCcHHHHHHhCCc
Confidence 88877888888754
No 48
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.8e-28 Score=262.07 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=144.9
Q ss_pred eEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.|+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 75 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSI--PSGSYVAIIGHTGSGKSTLLQHLNGLL----QPTSGTVTIGERVITAGK 75 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEECcccc
Confidence 489999999996421 135899999999 999999999999999999999999994 4455531
Q ss_pred --------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhh---------------------hhhhHHHHHHHH
Q 039839 76 --------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERG---------------------EDDTTFEKQSAL 119 (825)
Q Consensus 76 --------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~---------------------e~~~~~ErQRv~ 119 (825)
+..+||++|.. ++.+|+.+.....+.+..+.. .....+||||++
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 76 KNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred ccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 13478888753 456777665433333222111 112233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+||+ ++|||||||++||+.. +..++++++++.++.|.|||+||||++.+. .+||++++|++|+++..|
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~------~~~l~~~L~~l~~~~g~tviiitHd~~~~~-~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKG------RKEMMEMFYKLHKEKGLTTVLVTHSMEDAA-RYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEEC
Confidence 999999 9999999999999999 999999999998766899999999998773 589999999999999999
Q ss_pred CcccccCC
Q 039839 197 PKPQTLKN 204 (825)
Q Consensus 197 ~~~e~l~~ 204 (825)
++.+++..
T Consensus 229 ~~~~~~~~ 236 (290)
T PRK13634 229 TPREIFAD 236 (290)
T ss_pred CHHHHhcC
Confidence 87776544
No 49
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=242.63 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=151.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
+.|+++|+.|+||. ..+++++++.- ..|++++|||.+||||||+|+||.-+.. |..|+
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A--~~GdVisIIGsSGSGKSTfLRCiN~LE~----P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQA--NAGDVISIIGSSGSGKSTFLRCINFLEK----PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeec--CCCCEEEEecCCCCchhHHHHHHHhhcC----CCCceEEECCeEEEeeeC
Confidence 36999999999998 78999999999 9999999999999999999999988853 33333
Q ss_pred ---------------ccceeeEEcCCC------ccchhHHH-HHHhhCCChhhhhhhhhHH-------------------
Q 039839 75 ---------------SQTTKGIWIAKC------VGIEPFTI-AMDLEGSDSRERGEDDTTF------------------- 113 (825)
Q Consensus 75 ---------------~q~~~G~~~~~~------t~~enl~l-~ld~~g~~~~er~e~~~~~------------------- 113 (825)
.++..|++||+. ++.+|+.- +..+.|.+..+..+.+..+
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSG 155 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSG 155 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCc
Confidence 134567777764 44555544 3445576665554444332
Q ss_pred -HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 114 -EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 114 -ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
|+||++|||||+ +++|+||||++||||- .-+++.++++|+++ |.|.++|||.|.++. ..+.+++++++
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPEl------VgEVLkv~~~LAeE-grTMv~VTHEM~FAR-~Vss~v~fLh~ 227 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPEL------VGEVLKVMQDLAEE-GRTMVVVTHEMGFAR-DVSSHVIFLHQ 227 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHH------HHHHHHHHHHHHHh-CCeEEEEeeehhHHH-hhhhheEEeec
Confidence 999999999999 9999999999999999 99999999999987 999999999999994 78999999999
Q ss_pred CeEEEecCcccccCCcc
Q 039839 190 QKIWDAVPKPQTLKNTP 206 (825)
Q Consensus 190 GkI~~~g~~~e~l~~~~ 206 (825)
|.|-+.|+|+++|.+..
T Consensus 228 G~iEE~G~P~qvf~nP~ 244 (256)
T COG4598 228 GKIEEEGPPEQVFGNPQ 244 (256)
T ss_pred ceecccCChHHHhcCCC
Confidence 99999999999886543
No 50
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.5e-28 Score=258.84 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=141.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|++ ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDF--SLSPVTGLVGANGCGKSTLFMNLSGLL----RPQKGAVLWQGKPLDYSKRG 71 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----CCCccEEEECCEEcccccCC
Confidence 4899999999975 56999999999 999999999999999999999999994 4555531
Q ss_pred ----cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 76 ----q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArAL 124 (825)
+..+|++++.. ++.+|+.+.....+....+..+ ....+||||++||+||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 13478887753 2345655543333322211111 1122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. +..+.+++.++.++ |+|||+||||++.+. .+||++++|++|+++..|+++++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vtH~~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAG------RTQMIAIIRRIVAQ-GNHVIISSHDIDLIY-EISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999 99999999999865 899999999998773 57999999999999999987665
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
+..
T Consensus 224 ~~~ 226 (271)
T PRK13638 224 FAC 226 (271)
T ss_pred hcC
Confidence 543
No 51
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.8e-28 Score=259.96 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=145.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
.+|+++|+++.|+.. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+
T Consensus 4 ~~l~~~~l~~~~~~~--~~~l~~vs~~i--~~Ge~~~i~G~nGaGKSTLl~~i~Gl~----~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 4 YILKVEELNYNYSDG--THALKGININI--KKGEVTAILGGNGAGKSTLFQNLNGIL----KPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred ceEEEEeEEEEeCCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCccEEEECCEECCCCcc
Confidence 379999999999632 46999999999 999999999999999999999999994 455553
Q ss_pred ----ccceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHH
Q 039839 75 ----SQTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALA 123 (825)
Q Consensus 75 ----~q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArA 123 (825)
.+..+||+++.. ++.+|+.+.....+....+..+. ...+|+||++||+|
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 123478887753 45667766543333332221111 12239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++|||||||+|||+.. +..+++++.++.++.|+|||++|||++.+. .+||++++|++|+++..|++++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvsH~~~~~~-~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMG------VSEIMKLLVEMQKELGLTIIIATHDIDIVP-LYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEEECCEEEEeCCHHH
Confidence 99 9999999999999999 999999999998755899999999998774 5799999999999999998777
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
.+..
T Consensus 229 ~~~~ 232 (283)
T PRK13636 229 VFAE 232 (283)
T ss_pred HhcC
Confidence 6543
No 52
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.8e-28 Score=251.98 Aligned_cols=178 Identities=12% Similarity=0.179 Sum_probs=158.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------c
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------Q 76 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------q 76 (825)
|++++++++|+|+. +.++++++|.+ ++|++.|++|||||||||++|+|.|+ +.|++|+. .
T Consensus 1 ~~L~ie~vtK~Fg~---k~av~~isf~v--~~G~i~GllG~NGAGKTTtfRmILgl----le~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 1 MALEIEGVTKSFGD---KKAVDNISFEV--PPGEIFGLLGPNGAGKTTTFRMILGL----LEPTEGEITWNGGPLSQEIK 71 (300)
T ss_pred CceEEecchhccCc---eeeecceeeee--cCCeEEEeecCCCCCccchHHHHhcc----CCccCceEEEcCcchhhhhh
Confidence 36999999999998 78999999999 99999999999999999999999999 66777762 3
Q ss_pred ceeeEE------cCCCccchhHHHHHHhhCCChhhhhhhhhHH--------------------HHHHHHHHHHHH---HH
Q 039839 77 TTKGIW------IAKCVGIEPFTIAMDLEGSDSRERGEDDTTF--------------------EKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~------~~~~t~~enl~l~ld~~g~~~~er~e~~~~~--------------------ErQRv~iArALa---~V 127 (825)
.++||+ ++++++.+.+.|...+.|++..+....+..+ ++|++.|..+++ ++
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 468887 6778899999999999999887765554433 999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
+|||||++||||-+ .+.+.+.+.++..+ |.||||+||.|+.+. +.||++++++.|+.+.+|+...+.
T Consensus 152 lILDEPFSGLDPVN------~elLk~~I~~lk~~-GatIifSsH~Me~vE-eLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 152 LILDEPFSGLDPVN------VELLKDAIFELKEE-GATIIFSSHRMEHVE-ELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred EEecCCccCCChhh------HHHHHHHHHHHHhc-CCEEEEecchHHHHH-HHhhhhheecCCceEEeccHHHHH
Confidence 99999999999999 99999999999887 999999999998885 689999999999999999877653
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.9e-28 Score=251.81 Aligned_cols=181 Identities=14% Similarity=0.190 Sum_probs=141.1
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||+++|+|+. .|..|+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 74 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSV--PKGEIFGIIGRSGAGKSTLIRCINGLE----RPTSGSVLVDGTDLTLLSG 74 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcccCCH
Confidence 489999999997520 016899999999 999999999999999999999999994 4555541
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALA 123 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArA 123 (825)
...+|++++. .++.+|+.+.....+.......+ ....+|+||++||+|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 75 KELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred HHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 1346777554 35577776654433322111111 112239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||+|||+.. +..+++.++++.++.|+|||+||||++.+. .+||++++|++|+++..+++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 155 LANNPKVLLCDEATSALDPET------TQSILALLRDINRELGLTIVLITHEMEVVK-RICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEecCHHH
Confidence 99 9999999999999999 999999999997655899999999998763 5799999999999999887655
Q ss_pred cc
Q 039839 201 TL 202 (825)
Q Consensus 201 ~l 202 (825)
..
T Consensus 228 ~~ 229 (233)
T cd03258 228 VF 229 (233)
T ss_pred Hh
Confidence 43
No 54
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=7.2e-28 Score=261.97 Aligned_cols=177 Identities=13% Similarity=0.120 Sum_probs=143.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
|+++++|++++|+. ..+++++++.+ .+|+++||+|||||||||||++|+|+ ..|++|+.
T Consensus 1 ~~l~~~~l~~~~~~---~~~l~~is~~i--~~Gei~~l~G~NGaGKTTLl~~l~Gl----~~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 1 MSIRVSSLTKLYGT---QNALDEVSFEA--QKGRIVGFLGPNGAGKSTTMKIITGY----LPPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred CEEEEEEEEEEECC---EEEEEEeEEEE--eCCeEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEECCEEcccChH
Confidence 36999999999976 56999999999 99999999999999999999999999 45566641
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa-- 125 (825)
+..+||+++. .++.+|+.+.....|.+..+..+. ...+||||++||+|++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 2357887654 355777776555555432211111 1223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||+|||+.. ++.+++.++++. + ++|||++||+++.+. ++||+++++++|+++..|++.++.
T Consensus 152 p~lliLDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sH~l~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQ------LVEIRNVIKNIG-K-DKTIILSTHIMQEVE-AICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999 999999999985 3 699999999998763 589999999999999999877754
No 55
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=258.93 Aligned_cols=184 Identities=21% Similarity=0.219 Sum_probs=158.7
Q ss_pred eEEEEEeEEEecCcc---------------------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc
Q 039839 9 CMQLIDGNGEFNVDG---------------------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE 67 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~---------------------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~ 67 (825)
.|+++|+.|-||.++ ..--+.++++.+ ..|||..|+|-||||||||+|+|.++
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v--~~GeIfViMGLSGSGKSTLvR~~NrL---- 77 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDV--EEGEIFVIMGLSGSGKSTLVRLLNRL---- 77 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeee--cCCeEEEEEecCCCCHHHHHHHHhcc----
Confidence 699999999997532 011256789999 99999999999999999999999999
Q ss_pred CCcCCCc-------------------ccceeeEEc------CCCccchhHHHHHHhhCCChhhhhhhhhHH---------
Q 039839 68 MDAFRGR-------------------SQTTKGIWI------AKCVGIEPFTIAMDLEGSDSRERGEDDTTF--------- 113 (825)
Q Consensus 68 ~~~~~G~-------------------~q~~~G~~~------~~~t~~enl~l~ld~~g~~~~er~e~~~~~--------- 113 (825)
..|+.|+ ++.+++++| |+.++.+|..|++++.|.+..++.+.+.+.
T Consensus 78 iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 78 IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh
Confidence 5666666 134556664 566889999999999999988887665432
Q ss_pred -----------HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccc
Q 039839 114 -----------EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLE 179 (825)
Q Consensus 114 -----------ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~ 179 (825)
|||||.|||||+ +|||+|||+++|||-- +..+.+.|.+|.++.++||+|||||++++ +.
T Consensus 158 ~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI------R~~mQdeLl~Lq~~l~KTIvFitHDLdEA-lr 230 (386)
T COG4175 158 ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI------RTEMQDELLELQAKLKKTIVFITHDLDEA-LR 230 (386)
T ss_pred hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH------HHHHHHHHHHHHHHhCCeEEEEecCHHHH-Hh
Confidence 999999999999 9999999999999988 99999999999998999999999999988 57
Q ss_pred ccCcEEEEeCCeEEEecCcccccCCc
Q 039839 180 YLEPILREDIQKIWDAVPKPQTLKNT 205 (825)
Q Consensus 180 ~~drvlvl~~GkI~~~g~~~e~l~~~ 205 (825)
+.|||.+|.+|+|+..|+|++++.+.
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHcCc
Confidence 99999999999999999999987543
No 56
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=9.5e-28 Score=251.57 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=139.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRALDDVSFTV--RPGEFVALLGPNGAGKSTLFSLLTRLY----VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred CEEEEeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCEEcccCChh
Confidence 4889999999975 56899999999 999999999999999999999999994 4555541
Q ss_pred -cceeeEEcCCC------ccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---
Q 039839 76 -QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA--- 125 (825)
Q Consensus 76 -q~~~G~~~~~~------t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa--- 125 (825)
...++++++.. ++.+|+.+.....+....+..+ ....+|+||++||+|++
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 12467776543 4466666544332322111111 11223999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||+|||++. +..+.+.+.++.++.|.|+|++|||++.+. .||++++|++|+++..+++.+..
T Consensus 152 ~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~--~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 152 ALLLLDEPTVGLDPAS------RAAIVAHVRALCRDQGLSVLWATHLVDEIE--ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CEEEEcCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecChhhHh--hCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999 999999999997544899999999998885 59999999999999988765543
No 57
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=7.6e-28 Score=248.69 Aligned_cols=169 Identities=15% Similarity=0.205 Sum_probs=132.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+... ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 1 ~l~~~~l~~~~~~~~-~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH-QPALDNLNFHI--TKGEMVFLVGHSGAGKSTFLKLILGIE----KPTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred CeEEEEEEEEecCCC-eeEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEehhhcChh
Confidence 489999999996421 35899999999 999999999999999999999999994 4555541
Q ss_pred -----cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHH
Q 039839 76 -----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArAL 124 (825)
+..+|+++|. .++.+|+.+.....+....+..+ ....+||||++||+||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred HHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1246777655 35677777654433322111111 1122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
+ ++|||||||++||++. +..+.+.+.++.++ |.|||+||||++.+. .+||+++++++|+|
T Consensus 154 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~vsH~~~~~~-~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPEL------SRDIMRLFEEFNRR-GTTVLVATHDINLVE-TYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEeCCcC
Confidence 9 9999999999999999 99999999999765 899999999998764 57999999999875
No 58
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-27 Score=263.70 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=143.1
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+|+++|+++.|+... ...++++++|.+ .+|+++||+|+||||||||+++|+|+..+...+.+|+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSV--KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 699999999996521 135899999999 99999999999999999999999999542111244430
Q ss_pred -------cceeeEEcCCCc--------cchhHHHHHHhh-CCChhhhhh-----------------------hhhHHHHH
Q 039839 76 -------QTTKGIWIAKCV--------GIEPFTIAMDLE-GSDSRERGE-----------------------DDTTFEKQ 116 (825)
Q Consensus 76 -------q~~~G~~~~~~t--------~~enl~l~ld~~-g~~~~er~e-----------------------~~~~~ErQ 116 (825)
...+|+++|... +.+++...+... +....+..+ ....+|+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 124788888742 223333333221 222111111 12233999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
||+||+||+ +|||+||||++||... +..++++|+++.++.|+|+||||||++.+. .+||+|++|+.|+|+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~------~~~il~lL~~l~~~~g~til~iTHdl~~~~-~~adri~vm~~G~iv 233 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTI------QAQIIELLLELQQKENMALVLITHDLALVA-EAAHKIIVMYAGQVV 233 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEE
Confidence 999999999 9999999999999999 999999999998766999999999998773 589999999999999
Q ss_pred EecCcccccCC
Q 039839 194 DAVPKPQTLKN 204 (825)
Q Consensus 194 ~~g~~~e~l~~ 204 (825)
+.|++.+++.+
T Consensus 234 e~g~~~~~~~~ 244 (326)
T PRK11022 234 ETGKAHDIFRA 244 (326)
T ss_pred EECCHHHHhhC
Confidence 99988776643
No 59
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=8e-28 Score=264.97 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=146.4
Q ss_pred cceEEEEEeEEEecCcc----------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-
Q 039839 7 CCCMQLIDGNGEFNVDG----------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~----------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~- 75 (825)
+++|+++|+++.|+... ...+++++++.+ .+|++++|+|+||||||||+++|+|+. .+.+|+.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~lvG~sGsGKSTLlk~i~Gl~----~p~~G~I~ 79 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRL--YEGETLGVVGESGCGKSTFARAIIGLV----KATDGEVA 79 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHHCCC----CCCCcEEE
Confidence 46899999999995310 145899999999 999999999999999999999999994 4455541
Q ss_pred -----------------cceeeEEcCCC--------ccchhHHHHHHhh--CCChhhhhhh-------------------
Q 039839 76 -----------------QTTKGIWIAKC--------VGIEPFTIAMDLE--GSDSRERGED------------------- 109 (825)
Q Consensus 76 -----------------q~~~G~~~~~~--------t~~enl~l~ld~~--g~~~~er~e~------------------- 109 (825)
+..++|++|+. ++.+|+.+.+... +....+..+.
T Consensus 80 ~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 80 WLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred ECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 23578887763 3466766654433 2222221111
Q ss_pred --hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 110 --DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 110 --~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
...+|+|||+||+||+ ++||+||||++||... +..|+++|+++.++.|+|+||||||++.+. .+||++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~~~til~iTHdl~~~~-~~~dri 232 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSI------QAQVVNLLQQLQREMGLSLIFIAHDLAVVK-HISDRV 232 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEE
Confidence 1223999999999999 9999999999999999 999999999998766899999999998874 579999
Q ss_pred EEEeCCeEEEecCcccccCC
Q 039839 185 LREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 185 lvl~~GkI~~~g~~~e~l~~ 204 (825)
++|+.|+|++.|++.+++.+
T Consensus 233 ~vl~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVYHN 252 (331)
T ss_pred EEEECCEEEEEcCHHHHHcC
Confidence 99999999999987776543
No 60
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.7e-28 Score=264.30 Aligned_cols=184 Identities=17% Similarity=0.149 Sum_probs=144.1
Q ss_pred ceEEEEEeEEEecCcc-------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc------
Q 039839 8 CCMQLIDGNGEFNVDG-------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~-------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------ 74 (825)
++|+++|+++.|+... ...++++|++.+ .+|+++||+|+||||||||+++|+|+. .+.+|+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~IvG~sGsGKSTLl~~l~gl~----~p~~G~i~~~g~ 77 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTL--ERGKTLAVVGESGCGKSTLARLLTMIE----TPTGGELYYQGQ 77 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHHcCC----CCCCcEEEECCE
Confidence 4799999999996311 136899999999 999999999999999999999999995 344453
Q ss_pred ------------ccceeeEEcCCC--------ccchhHHHHHHhh-CCChhhhhh---------------------hhhH
Q 039839 75 ------------SQTTKGIWIAKC--------VGIEPFTIAMDLE-GSDSRERGE---------------------DDTT 112 (825)
Q Consensus 75 ------------~q~~~G~~~~~~--------t~~enl~l~ld~~-g~~~~er~e---------------------~~~~ 112 (825)
.+..+|+++|+. ++.+++...+... +....+..+ ....
T Consensus 78 ~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 78 DLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG 157 (327)
T ss_pred EcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH
Confidence 123588998874 2334444333222 222211111 1123
Q ss_pred HHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 113 FEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 113 ~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
+|+||++||+||+ ++||+||||++||... +..|+++|.++.++.|+|+||||||++.+. .+||++++|+.
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~-~~adrv~vm~~ 230 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSV------QAQVLNLMMDLQQELGLSYVFISHDLSVVE-HIADEVMVMYL 230 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEEEC
Confidence 3999999999999 9999999999999999 999999999998766999999999998874 57999999999
Q ss_pred CeEEEecCcccccCC
Q 039839 190 QKIWDAVPKPQTLKN 204 (825)
Q Consensus 190 GkI~~~g~~~e~l~~ 204 (825)
|+|++.|++.+++.+
T Consensus 231 G~ive~g~~~~~~~~ 245 (327)
T PRK11308 231 GRCVEKGTKEQIFNN 245 (327)
T ss_pred CEEEEECCHHHHhcC
Confidence 999999988777653
No 61
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-27 Score=257.90 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=144.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+.
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~l~~vsl~i--~~Ge~~~i~G~nGaGKSTLl~~i~G~----~~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDAA-TYALKDVSFSV--YEGEWVAIVGHNGSGKSTLAKLLNGL----LLPEAGTITVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCCC-ccceeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCcEEEECCEECCcCcH
Confidence 3799999999996421 45899999999 99999999999999999999999999 45556641
Q ss_pred ---cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ---q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa 125 (825)
...+||+++.. ++.+|+.+.....+....+..+. ...+|+||++||+||+
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 23478887653 45677766544333332221111 1223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||+|||+.. +..+++++.++.++.|+|||+||||++.+. .||+++++++|+++..|++.+++
T Consensus 157 ~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~~~~tilivsH~~~~~~--~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRG------RREVLETVRQLKEQKGITVLSITHDLDEAA--QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHcCCCEEEEEecCHHHHH--cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999 999999999998766899999999998775 59999999999999999866654
Q ss_pred C
Q 039839 203 K 203 (825)
Q Consensus 203 ~ 203 (825)
.
T Consensus 229 ~ 229 (279)
T PRK13635 229 K 229 (279)
T ss_pred c
Confidence 4
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=1.3e-27 Score=247.11 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=136.2
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|+++.|+... ...+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 74 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTV--KPGEVTGLLGPNGAGKTTTLRMLAGLL----EPDAGFATVDGFDVVKEPA 74 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCc----CCCCceEEECCEEcccCHH
Confidence 488999999997521 016899999999 999999999999999999999999994 4555641
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa-- 125 (825)
+..+|++++. .++.+|+.+.....+....+..+. ...+||||++||+|++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (218)
T cd03266 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154 (218)
T ss_pred HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence 2346777654 356777766544333222111111 1223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
++|||||||++||+.. +..+.+++.++.++ |+|+|+||||++.+. .+||+++++++|+++..|
T Consensus 155 p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~-~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 155 PPVLLLDEPTTGLDVMA------TRALREFIRQLRAL-GKCILFSTHIMQEVE-RLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCEEEEcCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhcCEEEEEECCEEeecC
Confidence 9999999999999999 99999999999765 899999999997763 579999999999997643
No 63
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=1.1e-27 Score=250.55 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=138.8
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSV--RPGEIHGLIGPNGAGKTTLFNLISGFL----RPTSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEe--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCceEEECCEECCCCCHHH
Confidence 468999999975 46899999999 999999999999999999999999994 4555541
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCC----------hhhhhhh--------------------hhHHHHHH
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSD----------SRERGED--------------------DTTFEKQS 117 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~----------~~er~e~--------------------~~~~ErQR 117 (825)
+..+|++++. .++.+|+.+.....+.. ..+..+. ...+|+||
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 1236777664 35677776654322110 1111111 12239999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++||+|++ ++|||||||++||+.. +..+++.+.++.++ |+|+|+||||++.+. .+||+++++++|+|..
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~vsH~~~~~~-~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEE------TEELAELIRELRER-GITVLLVEHDMDVVM-SLADRVTVLDQGRVIA 223 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHH-HhCCEEEEEeCCEEEe
Confidence 99999999 9999999999999999 99999999999864 899999999998774 5799999999999999
Q ss_pred ecCccccc
Q 039839 195 AVPKPQTL 202 (825)
Q Consensus 195 ~g~~~e~l 202 (825)
.|++.+..
T Consensus 224 ~~~~~~~~ 231 (236)
T cd03219 224 EGTPDEVR 231 (236)
T ss_pred ecCHHHhc
Confidence 88766554
No 64
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-27 Score=258.71 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=142.4
Q ss_pred eEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
+|+++|+++.|++.. -+.+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~iiG~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFEL--EEGSFVALVGHTGSGKSTLMQHFNALL----KPSSGTITIAGYHITPET 75 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEECcccc
Confidence 699999999996411 135899999999 999999999999999999999999994 4555531
Q ss_pred --------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhh---------------------hhhhHHHHHHHH
Q 039839 76 --------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERG---------------------EDDTTFEKQSAL 119 (825)
Q Consensus 76 --------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~---------------------e~~~~~ErQRv~ 119 (825)
+..+|++++.. ++.+|+.+.....+....+.. ......||||++
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 76 GNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred ccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence 12468887753 556777654332222211110 112234999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+||+ ++|||||||+|||++. +..+.+++.++.++ |+|||+||||++.+. ..||+++++++|+++..|
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tvlivsH~~~~~~-~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEG------RKEMMQLFKDYQKA-GHTVILVTHNMDDVA-EYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 99999999999765 999999999998773 589999999999999999
Q ss_pred CcccccC
Q 039839 197 PKPQTLK 203 (825)
Q Consensus 197 ~~~e~l~ 203 (825)
++.+++.
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13641 228 SPKEIFS 234 (287)
T ss_pred CHHHHhc
Confidence 8776544
No 65
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.2e-27 Score=253.98 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=144.6
Q ss_pred CCCCCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----
Q 039839 1 MGMADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----- 75 (825)
Q Consensus 1 M~M~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----- 75 (825)
|.|. .++|+++|+++.|+... ..+++++++.+ .+|++++|+||||||||||+++|+|+ ..|.+|+.
T Consensus 1 ~~~~--~~~l~i~~l~~~~~~~~-~~~l~~isl~i--~~Ge~~~I~G~nGsGKSTLl~~i~Gl----~~~~~G~i~~~g~ 71 (269)
T PRK13648 1 MEDK--NSIIVFKNVSFQYQSDA-SFTLKDVSFNI--PKGQWTSIVGHNGSGKSTIAKLMIGI----EKVKSGEIFYNNQ 71 (269)
T ss_pred CCCC--CceEEEEEEEEEcCCCC-CcceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----CCCCceEEEECCE
Confidence 4554 45899999999996521 35899999999 99999999999999999999999999 44555541
Q ss_pred ----------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHH
Q 039839 76 ----------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSA 118 (825)
Q Consensus 76 ----------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv 118 (825)
+..+|++++.. ++.+|+.+.....+....+..+ ....+|+||+
T Consensus 72 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (269)
T PRK13648 72 AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV 151 (269)
T ss_pred ECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH
Confidence 23467877653 2345555543332222111111 1122399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+|++ ++|||||||++||+.. +..+++.++++.++.|+|+|+||||++.+. .||+++++++|++...
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tiiivtH~~~~~~--~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDA------RQNLLDLVRKVKSEHNITIISITHDLSEAM--EADHVIVMNKGTVYKE 223 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCchHHh--cCCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 999999999997655899999999998875 4999999999999999
Q ss_pred cCcccccCC
Q 039839 196 VPKPQTLKN 204 (825)
Q Consensus 196 g~~~e~l~~ 204 (825)
|++++....
T Consensus 224 g~~~~~~~~ 232 (269)
T PRK13648 224 GTPTEIFDH 232 (269)
T ss_pred cCHHHHhcC
Confidence 987765543
No 66
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=3.7e-28 Score=240.19 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=137.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
|+.+.++.+.|+. .-..+++.+ ..|++|+|+||||||||||||+|+|+. .|.+|..
T Consensus 1 ~l~L~~V~~~y~~-----~~~~fdl~v--~~ge~vAi~GpSGaGKSTLLnLIAGF~----~P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 1 MLALDDVRFSYGH-----LPMRFDLTV--PAGEIVAILGPSGAGKSTLLNLIAGFE----TPASGEILINGVDHTASPPA 69 (231)
T ss_pred CccccceEEeeCc-----ceEEEEEee--cCCcEEEEECCCCccHHHHHHHHHhcc----CCCCceEEEcCeecCcCCcc
Confidence 4778999999976 233556778 899999999999999999999999995 4555651
Q ss_pred cceeeEEcC------CCccchhHHHHHHhh-CCChh--hhhhh-----------------hhHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIA------KCVGIEPFTIAMDLE-GSDSR--ERGED-----------------DTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~------~~t~~enl~l~ld~~-g~~~~--er~e~-----------------~~~~ErQRv~iArALa---~ 126 (825)
++.+.++|| +.++.+|+.+++.-- ..... ++.+. ....|||||++||+|+ .
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 234555554 345566665543211 01111 11111 1223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCc
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNT 205 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~ 205 (825)
||+||||+++|||.- +.++..++.+++.+++.|+|||||.++.+. .++++++++++|+|...|+..+.+...
T Consensus 150 ilLLDEPFsALdP~L------R~eMl~Lv~~l~~E~~~TllmVTH~~~Da~-~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 150 ILLLDEPFSALDPAL------RAEMLALVSQLCDERKMTLLMVTHHPEDAA-RIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred eEEecCchhhcCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHH-HhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999877 999999999999999999999999997763 589999999999999999888776544
No 67
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-27 Score=254.01 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=144.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
|||+++|++++|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|..
T Consensus 1 ~~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 1 MTLRTENLTVGYGT---KRILNDLSLSL--PTGKITALIGPNGCGKSTLLKCFARLL----TPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred CEEEEEeEEEEECC---EEEEeeeeeEE--cCCcEEEEECCCCCCHHHHHHHHhCCc----CCCCcEEEECCEEhHHCCH
Confidence 36999999999976 56999999999 999999999999999999999999994 4555541
Q ss_pred ---cceeeEEcCCC------ccchhHHHHHH----hhCCChhh---hhh-----------------hhhHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC------VGIEPFTIAMD----LEGSDSRE---RGE-----------------DDTTFEKQSALFAL 122 (825)
Q Consensus 76 ---q~~~G~~~~~~------t~~enl~l~ld----~~g~~~~e---r~e-----------------~~~~~ErQRv~iAr 122 (825)
...+||+++.. ++.+|+.+... ..+..... +.. ....+|+||++||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 12467776653 45566654311 11111111 000 11223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|++ ++|||||||+|||++. +..+.+.+.++.++ |+|+|++|||++.+. ++||+++++++|+++..|++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~l~~~-~~tiii~tH~~~~~~-~~~d~i~~l~~G~i~~~~~~~ 223 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINH------QVELMRLMRELNTQ-GKTVVTVLHDLNQAS-RYCDHLVVLANGHVMAQGTPE 223 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEECCHHHHH-HhcCEEEEEECCeEEEEcCHH
Confidence 999 9999999999999999 99999999999765 899999999998763 589999999999999988876
Q ss_pred cccCCcccccccc
Q 039839 200 QTLKNTPLSEFFN 212 (825)
Q Consensus 200 e~l~~~~l~d~f~ 212 (825)
+.+....+..+|+
T Consensus 224 ~~~~~~~~~~~~~ 236 (255)
T PRK11231 224 EVMTPGLLRTVFD 236 (255)
T ss_pred HhcCHHHHHHHhC
Confidence 6654444444443
No 68
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=1.7e-27 Score=245.43 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=135.4
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+. .
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDI--ADGEFVVLLGPSGCGKTTTLRMIAGLE----EPTSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCCccc
Confidence 478999999976 56899999999 999999999999999999999999994 4555541 1
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---HH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~V 127 (825)
..++++++. .++.+|+.+.....+....+..+. ....||||++||+|++ ++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 246777654 355677766543333222111111 1223999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|||||||+|||+.. +..++++++++.++.|+|+|+||||++.+. .+||+++++++|+++..|
T Consensus 152 lllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKL------RVQMRAELKRLQQRLGTTTIYVTHDQVEAM-TMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCeEEEEECCEEEecC
Confidence 99999999999999 999999999998655899999999997763 579999999999998764
No 69
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=8.4e-28 Score=252.50 Aligned_cols=177 Identities=18% Similarity=0.177 Sum_probs=137.4
Q ss_pred eEEEEEeEEEec-CccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFN-VDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~-~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|+++.|+ . ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~l~~~~l~~~~~~~---~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 1 MLEVENLSKVYPNG---KQALKNINLNI--NPGEFVAIIGPSGAGKSTLLRCINRLV----EPSSGSILLEGTDITKLRG 71 (243)
T ss_pred CeEEEeeeeecCCC---cceeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCCccEEEECCEEhhhCCH
Confidence 488999999997 4 56899999999 999999999999999999999999994 4455531
Q ss_pred ------cceeeEEcCCC------ccchhHHHHHHh--------hCCChhhhhhh--------------------hhHHHH
Q 039839 76 ------QTTKGIWIAKC------VGIEPFTIAMDL--------EGSDSRERGED--------------------DTTFEK 115 (825)
Q Consensus 76 ------q~~~G~~~~~~------t~~enl~l~ld~--------~g~~~~er~e~--------------------~~~~Er 115 (825)
+..+|++++.. ++.+|+.+.... .+....+..+. ...+||
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred HHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 13467776653 455666543210 01111111111 122399
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
||++||+||+ ++|||||||++||++. +..+.++|.++.++.|+|+|+||||++.+. .+||+++++++|++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~tH~~~~~~-~~~d~v~~l~~G~i 224 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKT------SKQVMDYLKRINKEDGITVIINLHQVDLAK-KYADRIVGLKAGEI 224 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCeEEEEECCEE
Confidence 9999999999 9999999999999999 999999999997655899999999998773 58999999999999
Q ss_pred EEecCcccc
Q 039839 193 WDAVPKPQT 201 (825)
Q Consensus 193 ~~~g~~~e~ 201 (825)
+..|++++.
T Consensus 225 ~~~~~~~~~ 233 (243)
T TIGR02315 225 VFDGAPSEL 233 (243)
T ss_pred EecCCHHHh
Confidence 988876553
No 70
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=251.16 Aligned_cols=184 Identities=12% Similarity=0.130 Sum_probs=142.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|+. +.+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTV--NSGEIVGLLGPNGAGKTTTFYMVVGIV----PRDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCHH
Confidence 6999999999976 56999999999 999999999999999999999999994 4555531
Q ss_pred ---cceeeEEcCCC------ccchhHHHHHHhhC-CChhhhhh--------------------hhhHHHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC------VGIEPFTIAMDLEG-SDSRERGE--------------------DDTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ---q~~~G~~~~~~------t~~enl~l~ld~~g-~~~~er~e--------------------~~~~~ErQRv~iArALa 125 (825)
+..+|++++.. ++.+|+.+.....+ .+..+... ....+|+||++||+|++
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 23467776653 55677665432221 11111110 11223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||++||+.. +..+.+++.++.++ |.|+|++|||++.+. ..||+++++++|++...|++++.+
T Consensus 154 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiii~sH~~~~~~-~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPIS------VIDIKRIIEHLRDS-GLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEEcCHHHHH-HhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999 99999999998764 899999999997663 489999999999999998877665
Q ss_pred CCccccc
Q 039839 203 KNTPLSE 209 (825)
Q Consensus 203 ~~~~l~d 209 (825)
....+.+
T Consensus 226 ~~~~~~~ 232 (241)
T PRK10895 226 QDEHVKR 232 (241)
T ss_pred cChhHhH
Confidence 4333333
No 71
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-27 Score=247.73 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=137.5
Q ss_pred ceEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
++|+++|+++.|+... ...+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~i~~~~ 77 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSI--GEGEMMAIVGSSGSGKSTLLHLLGGLD----TPTSGDVIFNGQPMSKLS 77 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCC
Confidence 4799999999996421 135899999999 999999999999999999999999994 4555531
Q ss_pred --------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHH
Q 039839 76 --------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFA 121 (825)
Q Consensus 76 --------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iA 121 (825)
...+||++|. .++.+|+.+.....+....+..+. ...+||||++||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 78 SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 1347887765 356777776543323222111111 122399999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
+|++ ++|||||||++||+.. +..+.+++.++.++.|+|||+||||++.+. .++++++|++|+|+..++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~sH~~~~~~--~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARN------ADSIFQLLGELNRLQGTAFLVVTHDLQLAK--RMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--hhCEEEEEECCEEEEEec
Confidence 9999 9999999999999999 999999999997644899999999998775 457999999999998775
No 72
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=250.40 Aligned_cols=179 Identities=15% Similarity=0.140 Sum_probs=140.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHI--NQGEIVTLIGANGAGKTTLLGTLCGDP----RATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCceEEECCEecCCCCHH
Confidence 7999999999975 56899999999 999999999999999999999999994 4555531
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhhCCCh-hhhh------------------hhhhHHHHHHHHHHHHHH--
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLEGSDS-RERG------------------EDDTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~g~~~-~er~------------------e~~~~~ErQRv~iArALa-- 125 (825)
+..+|++++. .++.+|+.+......... .+.. .....+|+||++||+|++
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 1246777654 345666655321111000 0000 011223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
++|||||||+|||++. +..+.+.++++.++ |.|+|++|||++.+. ++||+++++++|+++..|++++++.+
T Consensus 156 p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPII------IQQIFDTIEQLREQ-GMTIFLVEQNANQAL-KLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHH-hhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999 99999999999865 899999999997663 58999999999999999987776543
No 73
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-27 Score=256.16 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=143.6
Q ss_pred ceEEEEEeEEEecCcc---ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------
Q 039839 8 CCMQLIDGNGEFNVDG---LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~---l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------- 75 (825)
.||+++|++++|+... .+.+++++++.+ .+|++++|+||||||||||+++|+|+. .+.+|+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~i~g~~i~~ 76 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEV--KKGEFLVILGRNGSGKSTIAKHMNALL----IPSEGKVYVDGLDTSD 76 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEeccc
Confidence 4799999999996311 145999999999 999999999999999999999999994 4555531
Q ss_pred -------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHH
Q 039839 76 -------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFA 121 (825)
Q Consensus 76 -------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iA 121 (825)
+..+|++++.. ++.+++.+.....+....+..+. ...+|+||++||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 77 EENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred cccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 23468887753 34556655543333332211111 112299999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
+||+ ++|||||||+|||+.. +..+.+.+.++.++.|+|||+||||++.+. .||+++++++|+|...|++
T Consensus 157 ral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvtH~~~~~~--~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSG------RREVVNTIKELNKKYGITIILITHYMEEAV--EADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecChHHHh--cCCEEEEEECCEEEEecCH
Confidence 9999 9999999999999999 999999999997655899999999998875 4999999999999999987
Q ss_pred ccccCC
Q 039839 199 PQTLKN 204 (825)
Q Consensus 199 ~e~l~~ 204 (825)
.+++..
T Consensus 229 ~~~~~~ 234 (280)
T PRK13633 229 KEIFKE 234 (280)
T ss_pred HHHhcC
Confidence 776543
No 74
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1e-27 Score=246.01 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=149.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+|++++|++..|+. ..+++++++.+ ..|||++|+|+||+|||||||+|+|+ .++.+|+.
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v--~~Geiv~llG~NGaGKTTlLkti~Gl----~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEV--ERGEIVALLGRNGAGKTTLLKTIMGL----VRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCeeEEECCeecCCCCH
Confidence 47999999999988 68999999999 99999999999999999999999999 45555651
Q ss_pred ----cceeeEE------cCCCccchhHHHHHHhhCCC-hhhh-hhh------------------hhHHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIW------IAKCVGIEPFTIAMDLEGSD-SRER-GED------------------DTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ----q~~~G~~------~~~~t~~enl~l~ld~~g~~-~~er-~e~------------------~~~~ErQRv~iArALa 125 (825)
+.-++++ |+.+|+.||+..+....... ...+ .+. ....|||.++|||||+
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 1223444 67789999998875543211 1010 111 1223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|+||||+.||-|.- .+.|++.+++|.++.|+|||+|.++...+ ++++||.++|++|+|+.+|+.+++.
T Consensus 153 ~~PklLLLDEPs~GLaP~i------v~~I~~~i~~l~~~~g~tIlLVEQn~~~A-l~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKI------VEEIFEAIKELRKEGGMTILLVEQNARFA-LEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred cCCCEEEecCCccCcCHHH------HHHHHHHHHHHHHcCCcEEEEEeccHHHH-HHhhCEEEEEeCCEEEEecCHHHHh
Confidence 9999998888877666 99999999999977689999999999988 5899999999999999999988877
Q ss_pred CCcccc
Q 039839 203 KNTPLS 208 (825)
Q Consensus 203 ~~~~l~ 208 (825)
.+..+.
T Consensus 226 ~~~~v~ 231 (237)
T COG0410 226 ADPDVR 231 (237)
T ss_pred cCHHHH
Confidence 665443
No 75
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.7e-27 Score=255.97 Aligned_cols=180 Identities=16% Similarity=0.156 Sum_probs=143.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+++++|+++.|+.. ..+++++++.+ .+|++++|+||||||||||+++|+|+ ..|.+|+.
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIA--PRNSRIAVIGPNGAGKSTLFRHFNGI----LKPTSGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----CCCCceEEEECCEECCcCCHH
Confidence 69999999999532 45899999999 99999999999999999999999999 44555641
Q ss_pred --cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH-
Q 039839 76 --QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA- 125 (825)
Q Consensus 76 --q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa- 125 (825)
...+|++++.. ++.+|+.+.....+.+.....+ ....+||||++||+||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 12467877653 4566776544322332211111 11223999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++|||||||+|||+.. +..++++++++.++.|+|||++|||++.+. ..||++++|++|+++..|++.+.+.
T Consensus 155 ~p~llilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQG------VKELIDFLNDLPETYGMTVIFSTHQLDLVP-EMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999 999999999998755899999999998773 5899999999999999998776654
No 76
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1e-28 Score=247.46 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=159.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|.+.|+.|+|++ +.+++++++.+ .+||+||++|||||||||.+.++.|+ ..|++|+.
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v--~~GEiVGLLGPNGAGKTT~Fymi~Gl----v~~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEV--NSGEIVGLLGPNGAGKTTTFYMIVGL----VRPDSGKILLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEE--cCCcEEEEECCCCCCceeEEEEEEEE----EecCCceEEECCcccccCChH
Confidence 6999999999988 78999999999 99999999999999999999999999 66777761
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhhCCChh--hhhhhh----hHH----------------HHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLEGSDSR--ERGEDD----TTF----------------EKQSALFALAI 124 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~g~~~~--er~e~~----~~~----------------ErQRv~iArAL 124 (825)
+.-+||++|. .++.+|+..+++....+.. ++.... .+| ||+|+.|||||
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH
Confidence 2346777664 5668999999988765543 333222 222 99999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +++|||||++|+||-. ...|.++++.|... |..|+++-|+..++ +.+|||.+++..|+|.++|+++++
T Consensus 155 a~~P~fiLLDEPFAGVDPia------V~dIq~iI~~L~~r-giGvLITDHNVREt-L~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIA------VIDIQRIIKHLKDR-GIGVLITDHNVRET-LDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred hcCCCEEEecCCccCCCchh------HHHHHHHHHHHHhC-CceEEEccccHHHH-HhhhheEEEEecCeEEecCCHHHH
Confidence 9 9999999999999999 99999999999886 99999999999666 469999999999999999999999
Q ss_pred cCCccccccc
Q 039839 202 LKNTPLSEFF 211 (825)
Q Consensus 202 l~~~~l~d~f 211 (825)
.++.....+|
T Consensus 227 ~~n~~Vr~~Y 236 (243)
T COG1137 227 VNNEDVRRVY 236 (243)
T ss_pred hcChhhhhhc
Confidence 9888877766
No 77
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.2e-27 Score=252.28 Aligned_cols=175 Identities=14% Similarity=0.214 Sum_probs=138.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------cce
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------QTT 78 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------q~~ 78 (825)
||+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. ...
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~~~~~~~~ 71 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTL--ESGELLVVLGPSGCGKTTLLNLIAGF----VPYQHGSITLDGKPVEGPGAE 71 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEECCEECCCCCCc
Confidence 4899999999976 56899999999 99999999999999999999999999 45566652 123
Q ss_pred eeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---HHhe
Q 039839 79 KGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA---DIVL 129 (825)
Q Consensus 79 ~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa---~VLL 129 (825)
+|++++. .++.+|+.+.....+....+..+ ....+|+||++||+|++ ++||
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6777665 35567776654333322211111 11223999999999999 9999
Q ss_pred ecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe--CCeEEEecCcc
Q 039839 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED--IQKIWDAVPKP 199 (825)
Q Consensus 130 LDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~--~GkI~~~g~~~ 199 (825)
|||||++||+.. +..+.++|.++.++.|+|||+||||++.+. ..||++++|+ +|+|+..++.+
T Consensus 152 LDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tviivsH~~~~~~-~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 152 LDEPFGALDAFT------REQMQTLLLKLWQETGKQVLLITHDIEEAV-FMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999 999999999986544899999999998763 5899999998 59999887643
No 78
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2e-27 Score=246.38 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=137.3
Q ss_pred EEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------cce
Q 039839 10 MQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------QTT 78 (825)
Q Consensus 10 Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------q~~ 78 (825)
|+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+. ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSV--EEGEFVALVGPSGCGKSTLLRIIAGLE----RPTSGEVLVDGEPVTGPGPD 74 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEE--eCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECccccCc
Confidence 47899999996411 135899999999 999999999999999999999999994 4556641 234
Q ss_pred eeEEcCC------CccchhHHHHHHhhCCChhhhh--------------------hhhhHHHHHHHHHHHHHH---HHhe
Q 039839 79 KGIWIAK------CVGIEPFTIAMDLEGSDSRERG--------------------EDDTTFEKQSALFALAIA---DIVL 129 (825)
Q Consensus 79 ~G~~~~~------~t~~enl~l~ld~~g~~~~er~--------------------e~~~~~ErQRv~iArALa---~VLL 129 (825)
+|++++. .++.+|+.+.....+....... .....+||||++||+|++ ++||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6777654 4567777665443332211110 111223999999999999 9999
Q ss_pred ecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe--CCeEEEecCc
Q 039839 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED--IQKIWDAVPK 198 (825)
Q Consensus 130 LDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~--~GkI~~~g~~ 198 (825)
|||||++||+.. +..++++++++.++.|+|||+||||++.+. .+||++++|+ +|+++..++.
T Consensus 155 LDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 155 LDEPFSALDALT------REQLQEELLDIWRETGKTVLLVTHDIDEAV-FLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred ECCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHH-HhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999 999999999997655899999999997663 5899999999 7999987764
No 79
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-27 Score=255.86 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=141.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+.. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|..|+.
T Consensus 1 ml~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 1 MIRLENVSYSYPDG--TPALENINLVI--KKGEYIGIIGKNGSGKSTLALHLNGLL----RPQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred CEEEEEEEEEcCCC--CceeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEECCccccH
Confidence 48899999999532 45999999999 999999999999999999999999994 4555531
Q ss_pred ---cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA 125 (825)
Q Consensus 76 ---q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa 125 (825)
+..+|++++.. ++.+|+.+.....+.+..+..+.+ ..+|+||++||+|++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 13467776642 445666654433333222111111 223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
+||||||||+|||+.. +..+++.+.++.++ |+|||++|||++.+. .||+++++++|+++..|++.+.+
T Consensus 153 ~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~~tH~~~~~~--~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDS------GIAVLERIKKLHEK-GKTIVYITHNLEELH--DADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHh--hCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999 99999999999865 999999999998775 69999999999999999877665
Q ss_pred CC
Q 039839 203 KN 204 (825)
Q Consensus 203 ~~ 204 (825)
..
T Consensus 224 ~~ 225 (274)
T PRK13644 224 SD 225 (274)
T ss_pred cC
Confidence 43
No 80
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-27 Score=255.67 Aligned_cols=187 Identities=15% Similarity=0.208 Sum_probs=145.0
Q ss_pred EEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccc-ccCCcCCCc-------------
Q 039839 10 MQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNF-REMDAFRGR------------- 74 (825)
Q Consensus 10 Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~-~~~~~~~G~------------- 74 (825)
|+|+|++..|.... ...++++|+|.+ .+||++||+|.||||||||.+.|+|+.. +.....+|+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i--~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFEL--KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEE--cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 78999999995421 346899999999 9999999999999999999999999964 211223333
Q ss_pred ------ccceeeEEcCCCccc--------hhHHHHHHhhC-C-Chhhhhhhh-----------------------hHHHH
Q 039839 75 ------SQTTKGIWIAKCVGI--------EPFTIAMDLEG-S-DSRERGEDD-----------------------TTFEK 115 (825)
Q Consensus 75 ------~q~~~G~~~~~~t~~--------enl~l~ld~~g-~-~~~er~e~~-----------------------~~~Er 115 (825)
+...++++||++... +.+.-.+...+ . ...+..+.+ ..+||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 124678999985332 22222222222 1 122111111 11299
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
|||.||.||+ ++||.||||++||... +..|+++|++|.++.|+++||||||+..+. ++||||++|+.|+|
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~------QaqIl~Ll~~l~~e~~~aiilITHDl~vva-~~aDri~VMYaG~i 232 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTV------QAQILDLLKELQREKGTALILITHDLGVVA-EIADRVAVMYAGRI 232 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcceEEEEECcEE
Confidence 9999999999 9999999999999999 999999999999988999999999998874 68999999999999
Q ss_pred EEecCcccccCCc
Q 039839 193 WDAVPKPQTLKNT 205 (825)
Q Consensus 193 ~~~g~~~e~l~~~ 205 (825)
++.|+..+++.+.
T Consensus 233 VE~g~~~~i~~~P 245 (316)
T COG0444 233 VEEGPVEEIFKNP 245 (316)
T ss_pred EEeCCHHHHhcCC
Confidence 9999988887654
No 81
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.4e-27 Score=243.97 Aligned_cols=169 Identities=12% Similarity=0.160 Sum_probs=134.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------cce
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------QTT 78 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------q~~ 78 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+. +..
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSV--EKGEIFGLLGPNGAGKTTTIRMILGII----LPDSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCCchhHHHHcc
Confidence 478999999975 56899999999 999999999999999999999999994 4556641 235
Q ss_pred eeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---HHhe
Q 039839 79 KGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA---DIVL 129 (825)
Q Consensus 79 ~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa---~VLL 129 (825)
+++++|. .++.+|+.+.....+....+..+ .....||||++||+|++ ++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7777654 35577776654333322111111 11223999999999999 9999
Q ss_pred ecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 130 LDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
|||||++||+.. +..+.+.++++.++ |.|+|++|||++.+. .+||+++++++|+++..
T Consensus 152 lDEP~~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~-~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 152 LDEPFSGLDPVN------VELLKDVIRELARA-GKTVILSTHQMELVE-ELCDRVLLLNKGRAVLY 209 (210)
T ss_pred EeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHH-HhhhEEEEEeCCEEEec
Confidence 999999999999 99999999999765 899999999998763 57999999999998764
No 82
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=250.52 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=140.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|..|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKF--EGGAIYTIVGPSGAGKSTLIKLINRL----IDPTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEECCEEhhhcChH
Confidence 6999999999975 46899999999 99999999999999999999999999 44555641
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHh--------------hCCCh---hhhhhhhhHHHHHHHHHHHHHH---HHh
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDL--------------EGSDS---RERGEDDTTFEKQSALFALAIA---DIV 128 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~--------------~g~~~---~er~e~~~~~ErQRv~iArALa---~VL 128 (825)
+..+|++++.. ++.+|+.+.... .|... .........+|+||++||+|++ ++|
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 23467776653 344555432111 11110 0001122344999999999999 999
Q ss_pred eecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 129 LLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
||||||++||++. +..+.+.++++.++.|.|||+||||++.+. ..||+++++++|+++..+++.+.+.
T Consensus 154 llDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tii~~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 154 LLDEPTSALDPTS------TEIIEELIVKLKNKMNLTVIWITHNMEQAK-RIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeccHHHHH-HhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999 999999999997655899999999998763 5799999999999999888776553
No 83
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-27 Score=267.60 Aligned_cols=183 Identities=18% Similarity=0.183 Sum_probs=146.3
Q ss_pred ceEEEEEeEEEecCccc---------------------cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc
Q 039839 8 CCMQLIDGNGEFNVDGL---------------------ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR 66 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l---------------------~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~ 66 (825)
.+|+++|++|.|+.... ...++++++.+ .+|++++|+||||||||||||+|+|+.
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i--~~Gei~~LvG~NGsGKSTLLr~I~Gl~-- 78 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAI--EEGEIFVIMGLSGSGKSTMVRLLNRLI-- 78 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEE--cCCCEEEEECCCCchHHHHHHHHHcCC--
Confidence 37999999999976320 12689999999 999999999999999999999999994
Q ss_pred cCCcCCCcc-------------------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh------------
Q 039839 67 EMDAFRGRS-------------------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED------------ 109 (825)
Q Consensus 67 ~~~~~~G~~-------------------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~------------ 109 (825)
.|.+|+. +..+||++|. .++.+|+.+.....+....+..+.
T Consensus 79 --~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~ 156 (400)
T PRK10070 79 --EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN 156 (400)
T ss_pred --CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 4555541 1257888665 466888887765545433221111
Q ss_pred --------hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccc
Q 039839 110 --------DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPL 178 (825)
Q Consensus 110 --------~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l 178 (825)
...+||||++|||||+ ++|||||||++||+.. +..+.+.+.++.++.|+||||||||++.+.
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~------r~~l~~~L~~l~~~~g~TIIivTHd~~~~~- 229 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI------RTEMQDELVKLQAKHQRTIVFISHDLDEAM- 229 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHCCCeEEEEECCHHHHH-
Confidence 1223999999999999 9999999999999999 999999999997655899999999998773
Q ss_pred cccCcEEEEeCCeEEEecCcccccC
Q 039839 179 EYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 179 ~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
.+||++++|++|+|+..|++.+++.
T Consensus 230 ~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 230 RIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HhCCEEEEEECCEEEecCCHHHHHh
Confidence 5899999999999999988766543
No 84
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.2e-27 Score=260.34 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=145.4
Q ss_pred cceEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----------
Q 039839 7 CCCMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR---------- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~---------- 74 (825)
.++|+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||+++|+|+.. |.+|+
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~----p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTF--EKNKIYFIIGNSGSGKSTLVTHFNGLIK----SKYGTIQVGDIYIGD 92 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCEEccc
Confidence 35799999999996421 135999999999 9999999999999999999999999953 44442
Q ss_pred ---------------------ccceeeEEcCCC-------ccchhHHHHHHhhCCChhhhh-------------------
Q 039839 75 ---------------------SQTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERG------------------- 107 (825)
Q Consensus 75 ---------------------~q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~------------------- 107 (825)
....+|+++|.. ++.+|+.+.....+.+..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 023478887753 456777665432232221111
Q ss_pred --hhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC
Q 039839 108 --EDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 108 --e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d 182 (825)
.....+||||++|||||+ ++|||||||+|||+.. +..+++++.++..+ |+|||+||||++.+. .+||
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~TiiivtHd~~~~~-~~ad 244 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG------EHEMMQLILDAKAN-NKTVFVITHTMEHVL-EVAD 244 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHH-HhCC
Confidence 112233999999999999 9999999999999999 99999999999765 899999999998763 4899
Q ss_pred cEEEEeCCeEEEecCcccccCCcc
Q 039839 183 PILREDIQKIWDAVPKPQTLKNTP 206 (825)
Q Consensus 183 rvlvl~~GkI~~~g~~~e~l~~~~ 206 (825)
++++|++|+|+..|++.+++....
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999998877765443
No 85
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=2.6e-27 Score=247.02 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=138.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEV--PKGEVTCVLGRNGVGKTTLLKTLMGLL----PVKSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEECCCCCHHH
Confidence 478999999976 56899999999 999999999999999999999999994 4555531
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh------------------hhhHHHHHHHHHHHHHH---H
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE------------------DDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e------------------~~~~~ErQRv~iArALa---~ 126 (825)
...+|++++. .++.+|+.+.....+....+... ....+|+||++||+|++ +
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1246777654 35566666554332221111100 11223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+|||||||++||+.. +..+.+++.++.++.|+|+|+||||++.+. .+||+++++++|+++..|+.+++
T Consensus 152 illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 152 LLLLDEPTEGIQPSI------IKDIGRVIRRLRAEGGMAILLVEQYLDFAR-ELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEecCCcccCCHHH------HHHHHHHHHHHHHcCCcEEEEEeCCHHHHH-HhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999 999999999998655899999999998774 57999999999999999876654
No 86
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-27 Score=255.11 Aligned_cols=182 Identities=12% Similarity=0.074 Sum_probs=144.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCC---Cc----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFR---GR---------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~---G~---------- 74 (825)
.+|+++|+++.|+... ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.. |.
T Consensus 4 ~~l~i~~l~~~~~~~~-~~~l~~v~l~i--~~Ge~~~I~G~nGaGKSTLl~~l~G~~----~p~~g~~G~i~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK-KPALNDISFSI--PRGSWTALIGHNGSGKSTISKLINGLL----LPDDNPNSKITVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCCCC-ccceeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhccc----CCCCCCCcEEEECCEECCc
Confidence 4799999999996421 35899999999 999999999999999999999999994 3443 32
Q ss_pred -----ccceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHH
Q 039839 75 -----SQTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFAL 122 (825)
Q Consensus 75 -----~q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iAr 122 (825)
.+..+||+++.. ++.+|+.+.....+....+..+. ...+|+||++||+
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 123578876643 56777776544334332221111 1223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ ++|||||||+|||+.. +..+.+.+.++.++.|+|||+||||++.+. .||++++|++|+++..|++.
T Consensus 157 al~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~--~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAG------KEQILKLIRKLKKKNNLTVISITHDIDEAN--MADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEEEEECCEEEEeCCHH
Confidence 999 9999999999999999 999999999998655899999999998775 69999999999999999877
Q ss_pred cccCC
Q 039839 200 QTLKN 204 (825)
Q Consensus 200 e~l~~ 204 (825)
+++..
T Consensus 229 ~~~~~ 233 (282)
T PRK13640 229 EIFSK 233 (282)
T ss_pred HHhcC
Confidence 66543
No 87
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-27 Score=251.56 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=140.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 4 PLLSVSGLMMRFGG---LLAVNNVNLEV--REQEIVSLIGPNGAGKTTVFNCLTGFY----KPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred ceEEEeeEEEEECC---EEEEEeeeeEE--cCCeEEEEECCCCCCHHHHHHHHhCCc----CCCcceEEECCEECCCCCH
Confidence 47999999999975 56999999999 999999999999999999999999994 4555641
Q ss_pred ----cceeeEEcCC------CccchhHHHHHH----------hhCC---Ch--hhhhhh--------------------h
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMD----------LEGS---DS--RERGED--------------------D 110 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld----------~~g~---~~--~er~e~--------------------~ 110 (825)
+..++++++. .++.+|+.+... ..+. .. .+..+. .
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 1125556554 355677765421 0010 00 000001 1
Q ss_pred hHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 111 TTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 111 ~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
..+||||++||+|++ ++|||||||+|||+.. +..+.++|.++.++.|+|||++|||++.+. .+||+++++
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l 227 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE------TKELDELIAELRNEHNVTVLLIEHDMKLVM-GISDRIYVV 227 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 123999999999999 9999999999999999 999999999998755899999999998774 579999999
Q ss_pred eCCeEEEecCcccccC
Q 039839 188 DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 ~~GkI~~~g~~~e~l~ 203 (825)
++|+++..|++++.+.
T Consensus 228 ~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 228 NQGTPLANGTPEEIRN 243 (255)
T ss_pred ECCeEEecCCHHHHhh
Confidence 9999999888766544
No 88
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=2.3e-27 Score=252.42 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=139.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|++ ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTL--RPGEVVAILGPNGAGKSTLLRALSGEL----SPDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEEcccCCHH
Confidence 6899999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred --cceeeEEcCCC------ccchhHHHHHHhhCCChhh---hhh-----------------hhhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRE---RGE-----------------DDTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~~------t~~enl~l~ld~~g~~~~e---r~e-----------------~~~~~ErQRv~iArALa-- 125 (825)
...+|++++.. ++.+|+.+.....+..... +.. ....+||||++||+||+
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 73 ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred HhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 13467776653 4466665543222211110 000 11223999999999998
Q ss_pred -------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 126 -------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 126 -------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
++|||||||++||+.. +..+.++++++.++.|.|||+||||++.+. .+||++++|++|+++..|++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAH------QHHVLRLARQLAHERGLAVIVVLHDLNLAA-RYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHH-HhcCEEEEEECCEEEeeCCH
Confidence 7999999999999999 999999999997334899999999998763 58999999999999988876
Q ss_pred ccccC
Q 039839 199 PQTLK 203 (825)
Q Consensus 199 ~e~l~ 203 (825)
.++..
T Consensus 226 ~~~~~ 230 (258)
T PRK13548 226 AEVLT 230 (258)
T ss_pred HHHhC
Confidence 66544
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=2.6e-27 Score=253.42 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=141.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTV--PRGKITAIMGPSGIGKTTLLRLIGGQI----APDHGEILFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEccccCh
Confidence 47999999999976 56899999999 999999999999999999999999994 4444531
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhh-CCChhhhh--------------------hhhhHHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLE-GSDSRERG--------------------EDDTTFEKQSALFAL 122 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~-g~~~~er~--------------------e~~~~~ErQRv~iAr 122 (825)
+..+|++++. .++.+|+.+..... +.+..... .....+||||++||+
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1246777665 35567776643321 11111100 111233999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|++ ++|||||||++||+.. ++.+.++++++.++.|+|||+||||++.+. .+||+++++++|++...|++.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~-~~~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPIT------MGVLVKLISELNSALGVTCVVVSHDVPEVL-SIADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHH-HhhCEEEEEECCEEEEeCCHH
Confidence 999 9999999999999999 999999999997655899999999997764 579999999999999988766
Q ss_pred ccc
Q 039839 200 QTL 202 (825)
Q Consensus 200 e~l 202 (825)
+++
T Consensus 230 ~~~ 232 (269)
T PRK11831 230 ALQ 232 (269)
T ss_pred HHh
Confidence 554
No 90
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.9e-27 Score=253.19 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=143.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+...-..+++++++.+ .+|++++|+|+||||||||+++|+|+. .+.+|+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSI--TKGEWVSIIGQNGSGKSTTARLIDGLF----EEFEGKVKIDGELLTAENV 76 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCCEEEECCEECCcCCH
Confidence 3799999999996421135899999999 999999999999999999999999994 4555541
Q ss_pred ---cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ---q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa 125 (825)
+..+||+++.. ++.+|+.+.....+....+..+. ...+|+||++|||||+
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 23468877653 45677765543323222111111 1223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||++||+.. ++.+.+.+.++.++.|+|||+||||++.+. .||+++++++|+++..|++++++
T Consensus 157 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tiil~sH~~~~~~--~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTG------RQEIMRVIHEIKEKYQLTVLSITHDLDEAA--SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH--hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999 999999999998755899999999998875 59999999999999999877665
Q ss_pred C
Q 039839 203 K 203 (825)
Q Consensus 203 ~ 203 (825)
.
T Consensus 229 ~ 229 (277)
T PRK13642 229 A 229 (277)
T ss_pred c
Confidence 4
No 91
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.95 E-value=5.3e-27 Score=244.35 Aligned_cols=173 Identities=18% Similarity=0.193 Sum_probs=134.4
Q ss_pred ceEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.+|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVV--KRGETIALIGESGSGKSTLLAILAGLD----DGSSGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeeEEECCEEcccCC
Confidence 4799999999996421 124899999999 999999999999999999999999994 4455531
Q ss_pred --------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHH
Q 039839 76 --------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFA 121 (825)
Q Consensus 76 --------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iA 121 (825)
...+|++++. .++.+|+.+.....+....+..+ ....+|+||++||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 1246777665 35567776543222222111111 1122399999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
+||+ ++|||||||+|||+.. +..+++.++++.++.|.|||++|||++... .||+++++++|++.+
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~--~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQT------GDKIADLLFSLNREHGTTLILVTHDLQLAA--RCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEEEEECCEEEe
Confidence 9999 9999999999999999 999999999997655899999999998764 599999999999864
No 92
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=3.2e-27 Score=248.05 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=139.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 ~l~~~~l~~~~~~---~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 1 MIEFKNVSKHFGP---TQVLHNIDLNI--DQGEVVVIIGPSGSGKSTLLRCINKLE----EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred CEEEEeEEEEECC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCChh
Confidence 4899999999975 56899999999 999999999999999999999999994 4555531
Q ss_pred ----cceeeEEcCC------CccchhHHHHHH-hhCCChhhhhhh--------------------hhHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMD-LEGSDSRERGED--------------------DTTFEKQSALFALAI 124 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld-~~g~~~~er~e~--------------------~~~~ErQRv~iArAL 124 (825)
+..+|++++. .++.+|+.+... ..+....+..+. ...+|+||++||+|+
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 1246777654 355677665421 112221111111 122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. +..+.+++.++.++ |+|+|+||||++.+. ..||+++++++|+++..|++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPEL------RHEVLKVMQDLAEE-GMTMVIVTHEIGFAE-KVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred hcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEeeCCHHHH
Confidence 9 9999999999999999 99999999999765 899999999998774 57999999999999998876665
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 43
No 93
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=3.7e-27 Score=248.80 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=139.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .+..|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEV--KPGEVVAIIGPSGSGKTTLLRCINLLE----QPEAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEccccccc
Confidence 6999999999975 46899999999 999999999999999999999999994 3444431
Q ss_pred ----------cceeeEEcCC------CccchhHHHHHH-hhCCChhhhh--------------------hhhhHHHHHHH
Q 039839 76 ----------QTTKGIWIAK------CVGIEPFTIAMD-LEGSDSRERG--------------------EDDTTFEKQSA 118 (825)
Q Consensus 76 ----------q~~~G~~~~~------~t~~enl~l~ld-~~g~~~~er~--------------------e~~~~~ErQRv 118 (825)
+..+|++++. .++.+|+.+... ..+....... .....+|+||+
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH
Confidence 1246777654 355677765322 1121111110 11122399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+|++ ++|||||||++||... +..+.+.+.++.++ |.|+|+||||++.+. .+||++++|++|+++..
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~-~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPEL------VGEVLNTIRQLAQE-KRTMVIVTHEMSFAR-DVADRAIFMDQGRIVEQ 225 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-HhcCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 99999999999865 899999999998763 57999999999999998
Q ss_pred cCccccc
Q 039839 196 VPKPQTL 202 (825)
Q Consensus 196 g~~~e~l 202 (825)
|++.+.+
T Consensus 226 ~~~~~~~ 232 (250)
T PRK11264 226 GPAKALF 232 (250)
T ss_pred CCHHHHh
Confidence 8766554
No 94
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=2.5e-27 Score=245.39 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=136.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|..|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTV--PEGEIVALLGRNGAGKTTLLKTIMGLL----PPRSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcCCCCHHH
Confidence 578999999976 46899999999 999999999999999999999999994 4445531
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCCh-hhhh------------------hhhhHHHHHHHHHHHHHH---
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDS-RERG------------------EDDTTFEKQSALFALAIA--- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~-~er~------------------e~~~~~ErQRv~iArALa--- 125 (825)
+..+|++++. .++.+|+.+.....+... ..+. .....+|+||++||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 1346777654 355677765543222100 0000 011223999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++|||||||++||++. +..++++++++.++ |+|+|++|||++.+. .+||+++++++|++...|++.+.
T Consensus 152 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 152 KLLLLDEPSEGLAPKI------VEEIFEAIRELRDE-GVTILLVEQNARFAL-EIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CEEEECCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999 99999999999864 899999999998763 58999999999999988875543
No 95
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=4.1e-27 Score=249.99 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=140.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQA--NAGDVISIIGSSGSGKSTFLRCINFLE----KPSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEccccccc
Confidence 6999999999976 56999999999 999999999999999999999999994 3444531
Q ss_pred ---------------cceeeEEcCC------CccchhHHHHH-HhhCCChhhh---------------------hhhhhH
Q 039839 76 ---------------QTTKGIWIAK------CVGIEPFTIAM-DLEGSDSRER---------------------GEDDTT 112 (825)
Q Consensus 76 ---------------q~~~G~~~~~------~t~~enl~l~l-d~~g~~~~er---------------------~e~~~~ 112 (825)
+..+||+++. .++.+|+.+.. ...+....+. ......
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 1346777655 35577776532 1112111110 111233
Q ss_pred HHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 113 FEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 113 ~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
+||||++|||||+ ++|||||||++||+.. ++.++++++++.++ |+|||+||||++.+. .+||+++++++
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsH~~~~~~-~~~d~i~~l~~ 227 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPEL------VGEVLRIMQQLAEE-GKTMVVVTHEMGFAR-HVSSHVIFLHQ 227 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-HhcCEEEEEEC
Confidence 4999999999999 9999999999999999 99999999999765 999999999998774 57999999999
Q ss_pred CeEEEecCccccc
Q 039839 190 QKIWDAVPKPQTL 202 (825)
Q Consensus 190 GkI~~~g~~~e~l 202 (825)
|+++..|++++.+
T Consensus 228 G~i~~~~~~~~~~ 240 (257)
T PRK10619 228 GKIEEEGAPEQLF 240 (257)
T ss_pred CEEEEeCCHHHhh
Confidence 9999998766654
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.94 E-value=1.4e-27 Score=265.44 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=141.6
Q ss_pred EEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------------cc
Q 039839 17 GEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------------QT 77 (825)
Q Consensus 17 k~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------------q~ 77 (825)
|.|+. +.+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. +.
T Consensus 1 ~~~~~---~~~l~~vs~~i--~~Gei~~l~G~sGsGKSTLLr~L~Gl----~~p~~G~I~i~G~~i~~~~~~~~~~~rr~ 71 (363)
T TIGR01186 1 KKTGG---KKGVNDADLAI--AKGEIFVIMGLSGSGKSTTVRMLNRL----IEPTAGQIFIDGENIMKQSPVELREVRRK 71 (363)
T ss_pred CccCC---ceeEEeeEEEE--cCCCEEEEECCCCChHHHHHHHHhCC----CCCCceEEEECCEECCcCCHHHHHHHHhC
Confidence 35655 56899999999 99999999999999999999999999 45566641 34
Q ss_pred eeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhh--------------------HHHHHHHHHHHHHH---HHh
Q 039839 78 TKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDT--------------------TFEKQSALFALAIA---DIV 128 (825)
Q Consensus 78 ~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~--------------------~~ErQRv~iArALa---~VL 128 (825)
.+||++|. .++.+|+.+.....|.+..++.+.+. .+|||||+|||||+ +||
T Consensus 72 ~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred cEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 67888654 57788998887766654433322221 22999999999999 999
Q ss_pred eecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 129 LLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
||||||++||+.. +..+++.+.++.++.|+||||||||++.+. .+||++++|++|+++..|++++++..
T Consensus 152 LlDEP~saLD~~~------r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~-~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 152 LMDEAFSALDPLI------RDSMQDELKKLQATLQKTIVFITHDLDEAI-RIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999 999999999998766899999999998773 58999999999999999988776643
No 97
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.2e-27 Score=251.31 Aligned_cols=189 Identities=16% Similarity=0.162 Sum_probs=143.6
Q ss_pred CCC-CCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc---
Q 039839 1 MGM-ADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS--- 75 (825)
Q Consensus 1 M~M-~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~--- 75 (825)
|+| +....+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+ ...|.+|+.
T Consensus 4 ~~~~~~~~~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 4 MSMVATAPSKIQVRNLNFYYGK---FHALKNINLDI--AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred hhHhcCCCceEEEEEEEEEeCC---eEEeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 444 444568999999999976 46899999999 99999999999999999999999999531 001234431
Q ss_pred --------------cceeeEEcCCC-----ccchhHHHHHHhh-CCChhh---h---------------------hhhhh
Q 039839 76 --------------QTTKGIWIAKC-----VGIEPFTIAMDLE-GSDSRE---R---------------------GEDDT 111 (825)
Q Consensus 76 --------------q~~~G~~~~~~-----t~~enl~l~ld~~-g~~~~e---r---------------------~e~~~ 111 (825)
...+||+++.. ++.+|+.+..... +.+..+ + .....
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 158 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCC
Confidence 23477877653 4566666543322 111110 0 01122
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.+|+||++||+|++ ++|||||||++||++. +..+.+.++++. + +.|||++|||++.+. .+||++++++
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~-~-~~tiii~sH~~~~~~-~~~d~i~~l~ 229 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPIS------TGRIEELITELK-Q-DYTVVIVTHNMQQAA-RCSDYTAFMY 229 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHH-HhCCEEEEEE
Confidence 34999999999999 9999999999999999 999999999995 3 689999999997763 5799999999
Q ss_pred CCeEEEecCcccccC
Q 039839 189 IQKIWDAVPKPQTLK 203 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~ 203 (825)
+|+++..|++.+.+.
T Consensus 230 ~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 230 LGELIEFGNTDTIFT 244 (260)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999988766544
No 98
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.6e-27 Score=259.69 Aligned_cols=186 Identities=14% Similarity=0.143 Sum_probs=141.7
Q ss_pred eEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+|+++|+++.|... ....+++++++.+ .+|++++|+|+||||||||+++|+|+..+...+.+|+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i--~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTL--TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 79999999999421 1146899999999 99999999999999999999999999642222344531
Q ss_pred -------cceeeEEcCCCc--------cchhHHHHHHhh------------------------CCChh-----hhhhhhh
Q 039839 76 -------QTTKGIWIAKCV--------GIEPFTIAMDLE------------------------GSDSR-----ERGEDDT 111 (825)
Q Consensus 76 -------q~~~G~~~~~~t--------~~enl~l~ld~~------------------------g~~~~-----er~e~~~ 111 (825)
...+|+++|... +.+++...+... |.... .......
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 125788888643 233443321110 11100 0001122
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.+|+|||+||+||+ ++||+||||++||... +..++++|+++.++.|+|+||||||++.+. .+||++++|+
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~tii~itHdl~~v~-~~~dri~vm~ 233 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTT------QAQIFRLLTRLNQNNNTTILLISHDLQMLS-QWADKINVLY 233 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEEEEEE
Confidence 34999999999999 9999999999999999 999999999998766999999999998884 5899999999
Q ss_pred CCeEEEecCcccccC
Q 039839 189 IQKIWDAVPKPQTLK 203 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~ 203 (825)
.|+|++.|+..+++.
T Consensus 234 ~G~ive~g~~~~i~~ 248 (330)
T PRK15093 234 CGQTVETAPSKELVT 248 (330)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999998776654
No 99
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=4.1e-27 Score=241.84 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=134.7
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHV--KKGEIYGFLGPNGAGKTTTMKIILGLI----KPDSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCCcccchHHHH
Confidence 478999999965 56999999999 999999999999999999999999994 4555531 2
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCCChhhhh----------------hhhhHHHHHHHHHHHHHH---HHheec
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG----------------EDDTTFEKQSALFALAIA---DIVLIN 131 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~----------------e~~~~~ErQRv~iArALa---~VLLLD 131 (825)
..++++++. .++.+|+.+.....+....... .....+||||++||+|++ ++||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 346777654 3556777665433222111100 111233999999999999 999999
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 132 EPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|||++||++. +..+++++.++.++ |.|+|+||||++.+. .+||+++++++|+++..|
T Consensus 152 EPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~-~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 152 EPTNGLDPDG------IKELRELILSLRDQ-GITVLISSHLLSEIQ-KVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHH-HhcCEEEEEECCEEEecC
Confidence 9999999999 99999999999874 899999999998773 579999999999997654
No 100
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=3.5e-27 Score=247.90 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=138.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|++ ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYV--DPGELRVIIGPNGAGKTTMMDVITGKT----RPDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEECCeecCCCCHH
Confidence 6899999999976 46899999999 999999999999999999999999994 4555531
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhh--------CCChhhhhhh--------------------hhHHHHHHH
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLE--------GSDSRERGED--------------------DTTFEKQSA 118 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~--------g~~~~er~e~--------------------~~~~ErQRv 118 (825)
+..+|++++. .++.+|+.+..... +.......+. ...+|+||+
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 1236776554 35667776643211 0110100011 122399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+|++ ++|||||||++||++. +..++++++++.+ +.|+|+||||++.+. .+||+++++++|++...
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~-~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEE------TEKTAELLKSLAG--KHSVVVVEHDMEFVR-SIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHHHhc--CCEEEEEECCHHHHH-HhCCEEEEEECCeEEee
Confidence 9999999 9999999999999999 9999999999965 689999999998774 57999999999999998
Q ss_pred cCcccccC
Q 039839 196 VPKPQTLK 203 (825)
Q Consensus 196 g~~~e~l~ 203 (825)
|+++++..
T Consensus 224 ~~~~~~~~ 231 (242)
T TIGR03411 224 GSLDQVQA 231 (242)
T ss_pred CCHHHHhc
Confidence 87666543
No 101
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-27 Score=252.60 Aligned_cols=194 Identities=15% Similarity=0.134 Sum_probs=146.1
Q ss_pred CCCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------
Q 039839 3 MADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------- 75 (825)
Q Consensus 3 M~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------- 75 (825)
|.+...+|+++|++++|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+..|+.
T Consensus 1 ~~~~~~~l~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~ 71 (265)
T PRK10253 1 MTESVARLRGEQLTLGYGK---YTVAENLTVEI--PDGHFTAIIGPNGCGKSTLLRTLSRLM----TPAHGHVWLDGEHI 71 (265)
T ss_pred CCccccEEEEEEEEEEECC---EEEeeecceEE--CCCCEEEEECCCCCCHHHHHHHHcCCC----CCCCcEEEECCEEh
Confidence 3344568999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred --------cceeeEEcCCC------ccchhHHHHHH-hhC----CChh--hhhh-----------------hhhHHHHHH
Q 039839 76 --------QTTKGIWIAKC------VGIEPFTIAMD-LEG----SDSR--ERGE-----------------DDTTFEKQS 117 (825)
Q Consensus 76 --------q~~~G~~~~~~------t~~enl~l~ld-~~g----~~~~--er~e-----------------~~~~~ErQR 117 (825)
...+||+++.. ++.+|+.+... ..+ .... ++.. ....+|+||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHH
Confidence 12467877653 34555544210 000 0000 0000 012239999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++||||++ ++|||||||+|||++. +..+.+.|.++.++.|+|+|+||||++.+. .+||+++++++|+++.
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tiii~tH~~~~~~-~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISH------QIDLLELLSELNREKGYTLAAVLHDLNQAC-RYASHLIALREGKIVA 224 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEE
Confidence 99999999 9999999999999999 999999999998655899999999998763 5899999999999999
Q ss_pred ecCcccccCCcccccccc
Q 039839 195 AVPKPQTLKNTPLSEFFN 212 (825)
Q Consensus 195 ~g~~~e~l~~~~l~d~f~ 212 (825)
.|++.++.....+..+|+
T Consensus 225 ~g~~~~~~~~~~~~~~~~ 242 (265)
T PRK10253 225 QGAPKEIVTAELIERIYG 242 (265)
T ss_pred eCCHHHHhhHHHHHHHhC
Confidence 998766544333344443
No 102
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=5.1e-27 Score=243.88 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=134.6
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+|+++|+++.|+... -..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 74 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSI--KKGETLGLVGESGSGKSTLARAILGLL----KPTSGSIIFDGKDLLKLSR 74 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEccccch
Confidence 478999999996520 016899999999 999999999999999999999999994 4555531
Q ss_pred ------cceeeEEcCCC--------ccchhHHHHHHhhCCCh-hhh-h---------------------hhhhHHHHHHH
Q 039839 76 ------QTTKGIWIAKC--------VGIEPFTIAMDLEGSDS-RER-G---------------------EDDTTFEKQSA 118 (825)
Q Consensus 76 ------q~~~G~~~~~~--------t~~enl~l~ld~~g~~~-~er-~---------------------e~~~~~ErQRv 118 (825)
+..+||+++.. ++.+|+.+.....+... .+. . .....+|+||+
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 12467776653 44567665443322111 000 0 00122399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||||++ ++|||||||++||++. +..+.+.+.++.++.|.|||+||||++.+. ..||+++++++|+++..
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSV------QAQILDLLKKLQEELGLTLLFITHDLGVVA-KIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCeEEEEeCCEEEec
Confidence 9999999 9999999999999999 999999999998655899999999998764 57999999999999764
Q ss_pred c
Q 039839 196 V 196 (825)
Q Consensus 196 g 196 (825)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 3
No 103
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3e-27 Score=235.91 Aligned_cols=177 Identities=16% Similarity=0.248 Sum_probs=154.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----------ce
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----------TT 78 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----------~~ 78 (825)
++.+.+++.+|.+.. ..++.++++++ ..|+.|.++||||||||||||+++|+ +.|..|+.+ ..
T Consensus 3 ~l~~~~~sl~y~g~~-~~~le~vsL~i--a~ge~vv~lGpSGcGKTTLLnl~AGf----~~P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 3 MLNVSHLSLSYEGKP-RSALEDVSLTI--ASGELVVVLGPSGCGKTTLLNLIAGF----VTPSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred eeehhheEEecCCcc-hhhhhccceee--cCCCEEEEEcCCCccHHHHHHHHhcC----cCcccceEEECCEeccCCCcc
Confidence 689999999997743 56899999999 99999999999999999999999999 778878732 23
Q ss_pred eeEEcC------CCccchhHHHHHHhhCCChhhhhhhhhHH--------------------HHHHHHHHHHHH---HHhe
Q 039839 79 KGIWIA------KCVGIEPFTIAMDLEGSDSRERGEDDTTF--------------------EKQSALFALAIA---DIVL 129 (825)
Q Consensus 79 ~G~~~~------~~t~~enl~l~ld~~g~~~~er~e~~~~~--------------------ErQRv~iArALa---~VLL 129 (825)
.|++|| +.++.+|+.|++.+.|.++.+|.+.+..+ |||||.|||||+ ++|+
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence 567765 45779999999999999988887765443 999999999999 9999
Q ss_pred ecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC--CeEEEecCcc
Q 039839 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI--QKIWDAVPKP 199 (825)
Q Consensus 130 LDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~--GkI~~~g~~~ 199 (825)
||||+.+||.-. ++.+.+++.++.+..|+.+++||||++++ +-.++++++|.. |+|+...++.
T Consensus 156 LDEPfgAlDa~t------Re~mQelLldlw~~tgk~~lliTH~ieEA-lflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 156 LDEPFGALDALT------REQMQELLLDLWQETGKQVLLITHDIEEA-LFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ecCchhhHHHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHH-HhhhheeEEecCCCceeeEecCCC
Confidence 999999999998 99999999999998899999999999888 457999999974 7888876543
No 104
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=4.5e-27 Score=242.43 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=130.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+.. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|..|+.
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~is~~i--~~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 1 MIEFHNVSKAYPGG--VAALHDVSLHI--RKGEFLFLTGPSGAGKTTLLKLLYGAL----TPSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred CEEEEeeeEEeCCC--ceeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcccCCHH
Confidence 48999999999421 46899999999 999999999999999999999999994 4455541
Q ss_pred -----cceeeEEcCC------CccchhHHHHHHhhCCChhhhh--------------------hhhhHHHHHHHHHHHHH
Q 039839 76 -----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG--------------------EDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~--------------------e~~~~~ErQRv~iArAL 124 (825)
...+|++++. .++.+|+.+.....+....... .....+|+||++||+||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1246777654 3556777665433332211100 11123399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
+ ++|||||||++||+.. +..+.+.++++.++ |+|+|+||||++.+. .+||++++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~-~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDL------SERILDLLKRLNKR-GTTVIVATHDLSLVD-RVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HhcCEEEEecCCC
Confidence 9 9999999999999999 99999999998765 899999999997763 5799999999885
No 105
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.4e-27 Score=252.89 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=141.5
Q ss_pred ceEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------
Q 039839 8 CCMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------- 75 (825)
|+|+++|+++.|+... ...+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTI--EDGSYTAFIGHTGSGKSTIMQLLNGLH----VPTQGSVRVDDTLITST 74 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccc
Confidence 3599999999996421 135899999999 999999999999999999999999994 4445531
Q ss_pred ---------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhh---------------------hhhhhHHHHHHH
Q 039839 76 ---------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRER---------------------GEDDTTFEKQSA 118 (825)
Q Consensus 76 ---------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er---------------------~e~~~~~ErQRv 118 (825)
+..+||+++.. ++.+|+.+.....+....+. ......+||||+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred ccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 12467777653 45667665433322221110 011223499999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+|++ ++|||||||++||++. +..+.+.|+++.++ |+|||+||||++.+. .+||+++++++|++...
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiiivsH~~~~~~-~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKG------RKELMTLFKKLHQS-GMTIVLVTHLMDDVA-NYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHHH-HhCCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 99999999999765 899999999998763 57999999999999998
Q ss_pred cCcccccC
Q 039839 196 VPKPQTLK 203 (825)
Q Consensus 196 g~~~e~l~ 203 (825)
|++.+++.
T Consensus 227 g~~~~~~~ 234 (280)
T PRK13649 227 GKPKDIFQ 234 (280)
T ss_pred CCHHHHhc
Confidence 88766544
No 106
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.6e-27 Score=246.49 Aligned_cols=176 Identities=13% Similarity=0.113 Sum_probs=138.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
|+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+|+|+|+. .+.+|+.
T Consensus 1 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 1 MSIQLNGINCFYGA---HQALFDITLDC--PQGETLVLLGPSGAGKSSLLRVLNLLE----MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CEEEEEeeEEEECC---eeeEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEecccccc
Confidence 36999999999976 56999999999 999999999999999999999999994 4444531
Q ss_pred ---------cceeeEEcCC------CccchhHHH-HHHhhCCChhhhhh--------------------hhhHHHHHHHH
Q 039839 76 ---------QTTKGIWIAK------CVGIEPFTI-AMDLEGSDSRERGE--------------------DDTTFEKQSAL 119 (825)
Q Consensus 76 ---------q~~~G~~~~~------~t~~enl~l-~ld~~g~~~~er~e--------------------~~~~~ErQRv~ 119 (825)
+..+||+++. .++.+|+.+ .....+....+..+ ....+||||++
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 1246777654 355666653 22222222111111 11223999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||||++ ++|||||||++||++. +..+.+.+.++.++ |+|+|+||||++... .+||+++++++|++...|
T Consensus 152 laral~~~p~llilDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sh~~~~~~-~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIRELAET-GITQVIVTHEVEVAR-KTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HhcCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 99999999999764 899999999998773 579999999999999888
Q ss_pred Cccc
Q 039839 197 PKPQ 200 (825)
Q Consensus 197 ~~~e 200 (825)
++.+
T Consensus 224 ~~~~ 227 (242)
T PRK11124 224 DASC 227 (242)
T ss_pred CHHH
Confidence 7554
No 107
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.7e-28 Score=242.80 Aligned_cols=191 Identities=17% Similarity=0.251 Sum_probs=151.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEE------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIW------ 82 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~------ 82 (825)
||+++|++|+|+. +.++.++++.+ ++|.+++|||||||||||||.+++.+ ++.++|.. ...|.-
T Consensus 1 MI~i~nv~K~y~~---~~vl~~isl~i--~~g~iTs~IGPNGAGKSTLLS~~sRL----~~~d~G~i-~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSYGT---KVVLDDVSLDI--PKGGITSIIGPNGAGKSTLLSMMSRL----LKKDSGEI-TIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhhCC---EEeeccceeee--cCCceeEEECCCCccHHHHHHHHHHh----ccccCceE-EEeeeecccCCh
Confidence 5899999999998 78999999999 99999999999999999999999999 56666762 111111
Q ss_pred ----------------cCCCccchhHHHHHHhh--CCChhhhhh--------------------hhhHHHHHHHHHHHHH
Q 039839 83 ----------------IAKCVGIEPFTIAMDLE--GSDSRERGE--------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 83 ----------------~~~~t~~enl~l~ld~~--g~~~~er~e--------------------~~~~~ErQRv~iArAL 124 (825)
....++.+-+.|+.-.+ |....+... ....+||||+.+|+.+
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 11122222222221111 111111111 1122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
| +.++||||.++||-.. ...+++.++++.++.|+|+++|.||++++. .++|+|+-+.+|+++..|+|+++
T Consensus 151 aQdTdyvlLDEPLNNLDmkH------sv~iMk~Lrrla~el~KtiviVlHDINfAS-~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKH------SVQIMKILRRLADELGKTIVVVLHDINFAS-CYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred eccCcEEEecCcccccchHH------HHHHHHHHHHHHHHhCCeEEEEEecccHHH-hhhhheeeecCCEEEecCCHHHh
Confidence 9 9999999999999998 999999999999999999999999999986 68999999999999999999999
Q ss_pred cCCcccccccccccc
Q 039839 202 LKNTPLSEFFNVEVT 216 (825)
Q Consensus 202 l~~~~l~d~f~~~~~ 216 (825)
++.+.++++|+.++.
T Consensus 224 i~~~~L~eiydm~i~ 238 (252)
T COG4604 224 IQPEILSEIYDMDIP 238 (252)
T ss_pred cCHHHHHHHhcCCce
Confidence 999999999998764
No 108
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.3e-27 Score=252.68 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=141.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+.. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .+..|+.
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 1 ILETRDLKYSYPDG--TEALKGINFKA--EKGEMVALLGPNGAGKSTLFLHFNGIL----KPTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred CEEEEEEEEEeCCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEECccccch
Confidence 48999999999632 45899999999 999999999999999999999999994 4445531
Q ss_pred ----cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 76 ----q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArAL 124 (825)
...+||+++.. ++.+|+.+.....+....+..+ ....+|+||++||+|+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 23467887753 4466666543222222111111 1122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||+|||+.. +..+++++.++.++ |+|||+||||++.+. .+||++++|++|+++..|++.+.
T Consensus 153 ~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~-~~til~vtH~~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMG------ASQIMKLLYDLNKE-GITIIISTHDVDLVP-VYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999 99999999999865 899999999998774 58999999999999999987766
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
+..
T Consensus 225 ~~~ 227 (275)
T PRK13639 225 FSD 227 (275)
T ss_pred hcC
Confidence 543
No 109
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.5e-27 Score=250.64 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=142.8
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
..+|+++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 5 ~~~l~~~nl~~~~~~~~-~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-NNALKNVSFEI--NEGEYVAILGHNGSGKSTISKILTGLL----KPQSGEIKIDGITISKEN 77 (271)
T ss_pred ceEEEEEeEEEEcCCCC-ccceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEecCcCC
Confidence 35799999999995311 46899999999 999999999999999999999999994 4555531
Q ss_pred ----cceeeEEcCC-------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK-------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 76 ----q~~~G~~~~~-------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArAL 124 (825)
+..+||+++. .++.+|+.+.....+....+... ....+|+||++||+||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 2346787654 25577776654332222211111 1122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||+|||+.. +..+++++.++.++.+.|+|++|||++.+. .||++++|++|++...|++.+.
T Consensus 158 ~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~--~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKG------KREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEEechhHHh--hCCEEEEEECCEEEEecCHHHH
Confidence 9 9999999999999999 999999999997653589999999998775 6999999999999988876665
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
...
T Consensus 230 ~~~ 232 (271)
T PRK13632 230 LNN 232 (271)
T ss_pred hcC
Confidence 443
No 110
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.1e-27 Score=247.71 Aligned_cols=177 Identities=16% Similarity=0.178 Sum_probs=136.6
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+.. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSI--NPGEFVALIGPSGAGKSTLLRCLNGLV----EPTSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCCCceEEECCEeccccCHhH
Confidence 4689999999652 45899999999 999999999999999999999999994 4444531
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHh--------hCCChhhhhh--------------------hhhHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDL--------EGSDSRERGE--------------------DDTTFEKQS 117 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~--------~g~~~~er~e--------------------~~~~~ErQR 117 (825)
+..+|++++. .++.+|+.+.... .+.......+ ....+||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 152 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQR 152 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHH
Confidence 1246777654 3556666543210 0111111101 112239999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++||+|++ +||||||||++||+.. +..+++.++++.++.|+|||+||||++.+. .+||++++|++|+++.
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPAS------SRQVMDLLKRINREEGITVIVSLHQVDLAR-EYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEe
Confidence 99999999 9999999999999999 999999999997655899999999998774 5899999999999999
Q ss_pred ecCcccc
Q 039839 195 AVPKPQT 201 (825)
Q Consensus 195 ~g~~~e~ 201 (825)
.|++++.
T Consensus 226 ~~~~~~~ 232 (241)
T cd03256 226 DGPPAEL 232 (241)
T ss_pred ecCHHHh
Confidence 8876653
No 111
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=4e-27 Score=259.35 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=144.4
Q ss_pred ceEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
++|+++|+++.|... ....+++++++.+ .+|++++|+|+||||||||+++|+|+..+.. ..+|+.
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~-~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSL--RAGETLGIVGESGSGKSQTAFALMGLLAANG-RIGGSATFNGREILNLP 87 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEE--cCCCEEEEECCCCchHHHHHHHHHcCCCCCC-CCCeEEEECCEECCcCC
Confidence 579999999999531 1146899999999 9999999999999999999999999954310 024531
Q ss_pred --------cceeeEEcCCC--------ccchhHHHHHHhh-CCChhhh-----------------------hhhhhHHHH
Q 039839 76 --------QTTKGIWIAKC--------VGIEPFTIAMDLE-GSDSRER-----------------------GEDDTTFEK 115 (825)
Q Consensus 76 --------q~~~G~~~~~~--------t~~enl~l~ld~~-g~~~~er-----------------------~e~~~~~Er 115 (825)
...+++++|+. ++.+++...+... +....+. ......+|+
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 13588998874 2344444333222 1221111 011233499
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
|||+||+||+ ++||+||||++||... +..|+++|+++.++.|+|+||||||++.+. .+||++++|++|+|
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~-~~~Dri~vm~~G~i 240 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTV------QAQIMTLLNELKREFNTAIIMITHDLGVVA-GICDKVLVMYAGRT 240 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEECCHHHHH-HhCCEEEEEECCEE
Confidence 9999999999 9999999999999999 999999999998766999999999998774 57999999999999
Q ss_pred EEecCcccccCC
Q 039839 193 WDAVPKPQTLKN 204 (825)
Q Consensus 193 ~~~g~~~e~l~~ 204 (825)
++.|++.+++.+
T Consensus 241 ve~g~~~~i~~~ 252 (330)
T PRK09473 241 MEYGNARDVFYQ 252 (330)
T ss_pred EEECCHHHHHhC
Confidence 999998777653
No 112
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=5.3e-27 Score=244.17 Aligned_cols=177 Identities=17% Similarity=0.163 Sum_probs=137.6
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc-------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+... ...+.+|+.
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDI--PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 578999999976 46899999999 99999999999999999999999999400 003445531
Q ss_pred ----cceeeEEcCCC-----ccchhHHHHHHhhC-------------------CChh-h-h--hhhhhHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC-----VGIEPFTIAMDLEG-------------------SDSR-E-R--GEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 ----q~~~G~~~~~~-----t~~enl~l~ld~~g-------------------~~~~-e-r--~e~~~~~ErQRv~iArA 123 (825)
+..+|++++.. ++.+|+.+.....+ .... . . ......+||||++||+|
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 12467877663 56677665432222 1110 0 0 12234459999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. +..++++++++.++ +|||++|||++.+. .+||+++++++|+++..|++++
T Consensus 156 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~--~tii~~sH~~~~~~-~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPIS------TAKIEELIAELKKE--YTIVIVTHNMQQAA-RVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhhC--cEEEEEeccHHHHH-HhCCEEEEEeCCEEEEecCccc
Confidence 99 9999999999999999 99999999999764 89999999998763 5899999999999999887654
No 113
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=6.5e-27 Score=242.22 Aligned_cols=175 Identities=13% Similarity=0.153 Sum_probs=137.3
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|..
T Consensus 1 l~~~~l~~~~~~~~-~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGT-KPAVDDLSLNV--YKGEIFGLLGHNGAGKTTTLKMLTGEL----RPTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCC-ceeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccchHHH
Confidence 57899999996421 35899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~ 126 (825)
...+|++++. .++.+|+.+.....+....+..+. ...+|+||++||+|++ +
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 2346777654 355677766544433322111111 1123999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+|||||||++||+.. +..+.+.+.++.+ +.|+|++|||++.+. .+||+++++++|+++..|++++
T Consensus 154 llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~-~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 154 VLLLDEPTSGLDPAS------RRAIWDLILEVRK--GRSIILTTHSMDEAE-ALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EEEECCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEcCCHHHHH-HhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999 9999999999875 589999999998774 5799999999999998886543
No 114
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.94 E-value=7.6e-27 Score=248.05 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=139.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 5 PLLSVRGLTKLYGP---RKGCRDVSFDL--YPGEVLGIVGESGSGKTTLLNALSARL----APDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred ceEEEeeeEEEcCC---ceeeeeeeEEE--eCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCcccccccc
Confidence 37999999999976 46899999999 999999999999999999999999995 3444421
Q ss_pred ------------cceeeEEcCCC--------ccchhHHHHHHhh-------------------CCCh---hhhhhhhhHH
Q 039839 76 ------------QTTKGIWIAKC--------VGIEPFTIAMDLE-------------------GSDS---RERGEDDTTF 113 (825)
Q Consensus 76 ------------q~~~G~~~~~~--------t~~enl~l~ld~~-------------------g~~~---~er~e~~~~~ 113 (825)
...+||+++.. ++.+|+.+.+... +... .........+
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGG 155 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHH
Confidence 12367887764 2334544322111 1110 0011122334
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
|+||++||||++ +||||||||++||++. ...+.+.++++.++.|.|||+||||++.+. .+||+++++++|
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~isH~~~~~~-~~~d~i~~l~~g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVAR-LLAHRLLVMKQG 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHH-HhcCEEEEEECC
Confidence 999999999999 9999999999999999 999999999987655899999999998874 579999999999
Q ss_pred eEEEecCccccc
Q 039839 191 KIWDAVPKPQTL 202 (825)
Q Consensus 191 kI~~~g~~~e~l 202 (825)
+++..|++++++
T Consensus 229 ~i~~~~~~~~~~ 240 (258)
T PRK11701 229 RVVESGLTDQVL 240 (258)
T ss_pred EEEEeCCHHHHh
Confidence 999998876654
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=4.6e-27 Score=250.33 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=139.9
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------c
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------Q 76 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------q 76 (825)
..+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. +
T Consensus 10 ~~~l~i~~l~~~~~~---~~il~~isl~i--~~Ge~~~I~G~NGsGKSTLlk~l~Gl----~~p~~G~i~~~g~~~~~~~ 80 (257)
T PRK11247 10 GTPLLLNAVSKRYGE---RTVLNQLDLHI--PAGQFVAVVGRSGCGKSTLLRLLAGL----ETPSAGELLAGTAPLAEAR 80 (257)
T ss_pred CCcEEEEEEEEEECC---cceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCeEEEECCEEHHHhh
Confidence 357999999999976 56899999999 99999999999999999999999999 45666652 2
Q ss_pred ceeeEEcCC------CccchhHHHHHH------------hhCCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMD------------LEGSDS--RERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld------------~~g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
..+||+++. .++.+|+.+... ..|... .........+||||++||+||+ ++||||||
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEP 160 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP 160 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 346777665 355666654321 011111 0011122344999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|++||+.. +..+.++|.++.++.|+|||+||||++.+. .+||+++++++|+++..++.+
T Consensus 161 t~~LD~~~------~~~l~~~L~~~~~~~~~tviivsHd~~~~~-~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 161 LGALDALT------RIEMQDLIESLWQQHGFTVLLVTHDVSEAV-AMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEeecccc
Confidence 99999999 999999999987655899999999998763 479999999999999887654
No 116
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=4.7e-27 Score=242.92 Aligned_cols=169 Identities=25% Similarity=0.299 Sum_probs=131.6
Q ss_pred EEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 10 MQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
|+++|+++.|+... ...+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i--~~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSI--EKGEFVAIVGPSGSGKSTLLNILGGLD----RPTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEE--cCCCEEEEEcCCCCCHHHHHHHHhCCc----CCCceeEEECCEehhhcchh
Confidence 47899999996411 135899999999 999999999999999999999999994 4555541
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALA 123 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArA 123 (825)
...+||+++. .++.+|+.+.....+.......+ ....+||||++||+|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 1246777554 35677777654433322111101 112239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
++ ++|||||||++||+.. +..+.++++++.++.|+|||+||||++.+. .||++++|++|++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~--~~d~v~~l~~G~i 218 (218)
T cd03255 155 LANDPKIILADEPTGNLDSET------GKEVMELLRELNKEAGTTIVVVTHDPELAE--YADRIIELRDGKI 218 (218)
T ss_pred HccCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHHh--hhcEEEEeeCCcC
Confidence 99 9999999999999999 999999999997644899999999998774 8999999999974
No 117
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.2e-27 Score=247.12 Aligned_cols=187 Identities=13% Similarity=0.113 Sum_probs=144.5
Q ss_pred CCCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCc-------
Q 039839 3 MADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGR------- 74 (825)
Q Consensus 3 M~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~------- 74 (825)
|+..+.+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+..+.. .+.+|+
T Consensus 1 ~~~~~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 1 MPKNEAIIETENLNLFYTD---FKALNNINIKI--LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN 75 (254)
T ss_pred CCCCCceEEEeeeEEEeCC---ceeecceeeEE--cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEe
Confidence 4555568999999999976 46899999999 9999999999999999999999999954310 012343
Q ss_pred ----------ccceeeEEcCC-----CccchhHHHHHHhhCCC-hh---hhh---------------------hhhhHHH
Q 039839 75 ----------SQTTKGIWIAK-----CVGIEPFTIAMDLEGSD-SR---ERG---------------------EDDTTFE 114 (825)
Q Consensus 75 ----------~q~~~G~~~~~-----~t~~enl~l~ld~~g~~-~~---er~---------------------e~~~~~E 114 (825)
.+..+||++|. .++.+|+.+.....+.. .. ++. .....+|
T Consensus 76 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 76 IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred cccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHH
Confidence 12346777665 35677777654433221 10 000 0112239
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
|||++|||||+ ++|||||||++||+.. +..+++++.++. + ++|+|+||||++.+. .+||++++|++|+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~sH~~~~~~-~~~d~i~~l~~G~ 226 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPIS------TGKIEELIINLK-E-SYTIIIVTHNMQQAG-RISDRTAFFLNGC 226 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHH-HhCCEEEEEECCE
Confidence 99999999999 9999999999999999 999999999995 3 789999999998773 5799999999999
Q ss_pred EEEecCcccccC
Q 039839 192 IWDAVPKPQTLK 203 (825)
Q Consensus 192 I~~~g~~~e~l~ 203 (825)
++..|++.+++.
T Consensus 227 i~~~g~~~~~~~ 238 (254)
T PRK14273 227 IEEESSTDELFF 238 (254)
T ss_pred EEEeCCHHHHHh
Confidence 999998766543
No 118
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.5e-27 Score=247.08 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=141.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~----------- 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+... ...+.+|+.
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEF--EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEE--eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 58999999999975 46899999999 99999999999999999999999998420 001234431
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCCCh-hh---h---------------------hhhhhHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS-RE---R---------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~-~e---r---------------------~e~~~~~ErQRv~ 119 (825)
+..+||+++.. ++.+|+.+.....+... .. + ......+||||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 13467776653 55677776543332211 00 0 0112334999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+|++ ++|||||||++||+.. +..+.++++++. + ++|||+||||++.+. .+||+++++++|+|+..|
T Consensus 160 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~tH~~~~~~-~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIA------TQKIEELIHELK-A-RYTIIIVTHNMQQAA-RVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEecHHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 999999999995 3 789999999998773 589999999999999998
Q ss_pred CcccccC
Q 039839 197 PKPQTLK 203 (825)
Q Consensus 197 ~~~e~l~ 203 (825)
++++.+.
T Consensus 231 ~~~~~~~ 237 (253)
T PRK14242 231 PTEQIFT 237 (253)
T ss_pred CHHHHHc
Confidence 8766543
No 119
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=3.2e-27 Score=256.96 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=135.1
Q ss_pred EEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------cceeeEE
Q 039839 17 GEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------------QTTKGIW 82 (825)
Q Consensus 17 k~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------------q~~~G~~ 82 (825)
|.|+. ..+++++++.+ .+|+++||+||||||||||||+|+|+ ..|.+|+. ...+|++
T Consensus 1 k~y~~---~~~l~~vs~~i--~~Ge~~~l~G~NGaGKSTLl~~l~Gl----~~p~~G~i~~~g~~~~~~~~~~~~~i~~~ 71 (302)
T TIGR01188 1 KVYGD---FKAVDGVNFKV--REGEVFGFLGPNGAGKTTTIRMLTTL----LRPTSGTARVAGYDVVREPRKVRRSIGIV 71 (302)
T ss_pred CeeCC---eeEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEECCEEcccCHHHHHhhcEEe
Confidence 35654 56899999999 99999999999999999999999999 45566641 2347887
Q ss_pred cCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---HHheecCC
Q 039839 83 IAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 83 ~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
+|. .++.+|+.+.....+....+..+. ...+||||++||+||+ ++||||||
T Consensus 72 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 654 356777776555444332211111 1223999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
|+|||+.. +..++++++++.++ |+|||++|||++.+. .+||++++|++|+++..|++.++.
T Consensus 152 t~gLD~~~------~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~-~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 152 TTGLDPRT------RRAIWDYIRALKEE-GVTILLTTHYMEEAD-KLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred CcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999 99999999999865 999999999998774 589999999999999999876654
No 120
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=2.5e-27 Score=232.22 Aligned_cols=173 Identities=21% Similarity=0.263 Sum_probs=145.5
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
.|++.++++..+... --.|++++++.+ ..||.++|+||+||||||||-+++|++ .+++|.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v--~~Ge~vaiVG~SGSGKSTLl~vlAGLd----~~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVV--KRGETVAIVGPSGSGKSTLLAVLAGLD----DPSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEe--cCCceEEEEcCCCCcHHhHHHHHhcCC----CCCCceEEEcCcchhhcCH
Confidence 799999999986532 357999999999 999999999999999999999999995 455555
Q ss_pred ------ccceeeEEcC------CCccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHH
Q 039839 75 ------SQTTKGIWIA------KCVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFAL 122 (825)
Q Consensus 75 ------~q~~~G~~~~------~~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iAr 122 (825)
+...+|++|| +++..||+.+++.+.|.........+ ...|+|||+|||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 1356788865 46778999999998884322211111 112999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
|++ +||+.||||.+||.+. -+.|.+++..+..++|+|+++||||...+. .|+|.+.|..|+||.+
T Consensus 160 Afa~~P~vLfADEPTGNLD~~T------g~~iaDLlF~lnre~G~TlVlVTHD~~LA~--Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRAT------GDKIADLLFALNRERGTTLVLVTHDPQLAA--RCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhH------HHHHHHHHHHHhhhcCceEEEEeCCHHHHH--hhhheeeeecceeccC
Confidence 999 9999999999999999 999999999999999999999999999886 7999999999999854
No 121
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.7e-27 Score=253.30 Aligned_cols=182 Identities=13% Similarity=0.083 Sum_probs=140.7
Q ss_pred eEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.|+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 79 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTF--KKNKVTCVIGTTGSGKSTMIQLTNGLI----ISETGQTIVGDYAIPANL 79 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEccccc
Confidence 589999999996521 024899999999 999999999999999999999999995 3444431
Q ss_pred ---------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhh---------------------hhhhhHHHHHHH
Q 039839 76 ---------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRER---------------------GEDDTTFEKQSA 118 (825)
Q Consensus 76 ---------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er---------------------~e~~~~~ErQRv 118 (825)
+..+||+++.. ++.+|+.+.....+....+. ......+|+||+
T Consensus 80 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 80 KKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV 159 (289)
T ss_pred cccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 12467877653 44566665432222221111 011223399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+|||||+ ++|||||||++||+.. +..+++++.++.++.|+|||+||||++.+. .+||+++++++|+++..
T Consensus 160 ~laral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiiiisH~~~~~~-~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGLDPKG------EEDFINLFERLNKEYKKRIIMVTHNMDQVL-RIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 999999999997655899999999998763 58999999999999999
Q ss_pred cCcccccC
Q 039839 196 VPKPQTLK 203 (825)
Q Consensus 196 g~~~e~l~ 203 (825)
|++.+.+.
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 88666544
No 122
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=5.7e-27 Score=250.60 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=139.0
Q ss_pred ceEEEEEeEEEecCc------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------
Q 039839 8 CCMQLIDGNGEFNVD------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------ 75 (825)
.||+++|++++|+.. .-..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~ 76 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTL--REGQTLAIIGENGSGKSTLAKMLAGMI----EPTSGELLIDDHP 76 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEe--cCCCEEEEEcCCCCCHHHHHHHHhCCC----CCCCCEEEECCEE
Confidence 479999999999631 0135899999999 999999999999999999999999994 4555541
Q ss_pred ---------cceeeEEcCCCc--------cchhHHHHHHhh-CCChhhh---------------------hhhhhHHHHH
Q 039839 76 ---------QTTKGIWIAKCV--------GIEPFTIAMDLE-GSDSRER---------------------GEDDTTFEKQ 116 (825)
Q Consensus 76 ---------q~~~G~~~~~~t--------~~enl~l~ld~~-g~~~~er---------------------~e~~~~~ErQ 116 (825)
...+||+++... +.+++.+..... +....+. ......+|+|
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred CCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHH
Confidence 124788877642 223433322211 1111000 0112334999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|++||+|++ +||||||||++||++. +..+.++|.++.++.|.|||+||||++.+. .+||+++++++|+++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tviivsH~~~~~~-~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHLGMMK-HISDQVLVMHQGEVV 229 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHH-HhcCEEEEEECCEEE
Confidence 999999999 9999999999999999 999999999998655899999999998774 579999999999999
Q ss_pred EecCccccc
Q 039839 194 DAVPKPQTL 202 (825)
Q Consensus 194 ~~g~~~e~l 202 (825)
..|+++++.
T Consensus 230 ~~~~~~~~~ 238 (267)
T PRK15112 230 ERGSTADVL 238 (267)
T ss_pred ecCCHHHHh
Confidence 888766554
No 123
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=4.2e-27 Score=241.44 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=129.8
Q ss_pred EEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------ccee
Q 039839 12 LIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------QTTK 79 (825)
Q Consensus 12 l~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------q~~~ 79 (825)
++|+++.|+.. ..++.++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. +..+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDL--YAGEIIALTGKNGAGKTTLAKILAGL----IKESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----CCCCceEEEECCEEhhhHHhhcce
Confidence 67899999652 35899999999 99999999999999999999999999 45566641 1357
Q ss_pred eEEcCCC-------ccchhHHHHHHhhCCChhhhh----------------hhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 80 GIWIAKC-------VGIEPFTIAMDLEGSDSRERG----------------EDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 80 G~~~~~~-------t~~enl~l~ld~~g~~~~er~----------------e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
||+++.. ++.+|+.+.....+....... .....+||||++||||++ ++||||||
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 8877653 345666554322221111101 112233999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|++||++. ++.+.+.++++.++ |.|+|+||||++.+. .+||+++++++|+++
T Consensus 154 t~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~~-~~~d~i~~l~~G~iv 205 (205)
T cd03226 154 TSGLDYKN------MERVGELIRELAAQ-GKAVIVITHDYEFLA-KVCDRVLLLANGAIV 205 (205)
T ss_pred CccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEC
Confidence 99999999 99999999999765 899999999997763 579999999999874
No 124
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=9.4e-27 Score=241.86 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=138.2
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------cce
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------QTT 78 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------q~~ 78 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+ +.|.+|+. ...
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTV--PKNSVYGLLGPNGAGKSTLLKMITGI----LRPTSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEECCEecccccccc
Confidence 478999999976 56899999999 99999999999999999999999999 45566641 134
Q ss_pred eeEEcCC------CccchhHHHHHHhhCCChhhhh----------------hhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 79 KGIWIAK------CVGIEPFTIAMDLEGSDSRERG----------------EDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 79 ~G~~~~~------~t~~enl~l~ld~~g~~~~er~----------------e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
+|++++. .++.+|+.+.....+.+..... .....+|+||++||+|++ ++||||||
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP 151 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP 151 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 6777654 3556777655433332211111 112233999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|+|||++. +..+.+++.++.++ |.|+|++|||++.+. .+||+++++++|++...|++.
T Consensus 152 ~~~LD~~~------~~~l~~~L~~~~~~-~~tiii~sH~~~~~~-~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 152 TNGLDPIG------IQELRELIRSFPEQ-GITVILSSHILSEVQ-QLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred ccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHH-HhcCEEEEEeCCEEEEecChh
Confidence 99999999 99999999999765 899999999998774 589999999999999988754
No 125
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=1.1e-26 Score=240.76 Aligned_cols=171 Identities=19% Similarity=0.245 Sum_probs=132.3
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+|+++|+++.|+... -..++.++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~ 74 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSI--GKGEIVAIVGSSGSGKSTLLHLLGGLD----NPTSGEVLFNGQSLSKLSS 74 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEhhhcCH
Confidence 378999999996421 135899999999 999999999999999999999999994 4555531
Q ss_pred -------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHH
Q 039839 76 -------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFAL 122 (825)
Q Consensus 76 -------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iAr 122 (825)
+..+||+++. .++.+|+.+.....+....+..+ ....+||||++||+
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred hHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1347777665 35567776543322222111111 11223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|++ ++|||||||++||++. +..+.+.+.++.++.|.|+|+||||++.+. .||++++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~--~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNN------AKIIFDLMLELNRELNTSFLVVTHDLELAK--KLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHh--hcCEEEEEeCCEec
Confidence 999 9999999999999999 999999999997655899999999998775 58999999999975
No 126
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=9.2e-27 Score=248.62 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=140.0
Q ss_pred eEEEEEeEEEecCc------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------
Q 039839 9 CMQLIDGNGEFNVD------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------- 75 (825)
||+++|+++.|+.. ....+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSI--EEGETVGLLGRSGCGKSTLARLLLGLE----KPAQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEc
Confidence 58999999999531 0146899999999 999999999999999999999999994 4555531
Q ss_pred -----------cceeeEEcCCC--------ccchhHHHHHHhh-CCChhh---h------------------hhhhhHHH
Q 039839 76 -----------QTTKGIWIAKC--------VGIEPFTIAMDLE-GSDSRE---R------------------GEDDTTFE 114 (825)
Q Consensus 76 -----------q~~~G~~~~~~--------t~~enl~l~ld~~-g~~~~e---r------------------~e~~~~~E 114 (825)
+..+|++++.. ++.+|+.+..... +..... + ......+|
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 12478777652 3455554443221 111110 0 01112239
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
+||++||+|++ ++|||||||++||++. +..+.+.++++.++.|+|||+||||++.+. .+||+++++++|+
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~-~~~d~i~~l~~G~ 228 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVL------QAVILELLRKLQQAFGTAYLFITHDLRLVQ-SFCQRVAVMDKGQ 228 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHH-HHhcEEEEEeCCE
Confidence 99999999999 9999999999999999 999999999998655899999999998774 5799999999999
Q ss_pred EEEecCccccc
Q 039839 192 IWDAVPKPQTL 202 (825)
Q Consensus 192 I~~~g~~~e~l 202 (825)
++..|++.+++
T Consensus 229 i~~~g~~~~~~ 239 (265)
T TIGR02769 229 IVEECDVAQLL 239 (265)
T ss_pred EEEECCHHHHc
Confidence 99999876654
No 127
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.8e-27 Score=245.17 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=138.4
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
++++|++++|+.. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|..|+.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEI--AKGEFLVLIGPSGSGKTTTMKMINRLI----EPTSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCeEcCcCChHH
Confidence 4789999999752 35899999999 999999999999999999999999994 4555541
Q ss_pred -cceeeEEcCC------CccchhHHHHHHhhCCChhh----------------------hhhhhhHHHHHHHHHHHHHH-
Q 039839 76 -QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRE----------------------RGEDDTTFEKQSALFALAIA- 125 (825)
Q Consensus 76 -q~~~G~~~~~------~t~~enl~l~ld~~g~~~~e----------------------r~e~~~~~ErQRv~iArALa- 125 (825)
+..+||+++. .++.+|+.+.....+.+..+ .......+|+||++||+|++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 2346777654 35567776543322221100 01112334999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++|||||||++||+.. +..+.+.+.++.++.|+|||+||||++.+. .+||+++++++|+++..|++++.
T Consensus 153 ~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tvii~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 153 DPPLLLMDEPFGALDPIT------RDQLQEEFKRLQQELGKTIVFVTHDIDEAF-RLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CCCEEEecCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHH-HhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999 999999999997655899999999997663 58999999999999988876554
No 128
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.94 E-value=7.7e-27 Score=247.76 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=143.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~ 83 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. ...+||++
T Consensus 3 ~~l~~~~l~~~~~~---~~vl~~vs~~i--~~Ge~~~I~G~NGsGKSTLl~~i~Gl----~~p~~G~i~~~~~~~i~~v~ 73 (251)
T PRK09544 3 SLVSLENVSVSFGQ---RRVLSDVSLEL--KPGKILTLLGPNGAGKSTLVRVVLGL----VAPDEGVIKRNGKLRIGYVP 73 (251)
T ss_pred cEEEEeceEEEECC---ceEEEeEEEEE--cCCcEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEECCccCEEEec
Confidence 37999999999976 56899999999 99999999999999999999999999 56677753 23578887
Q ss_pred CCCccch----hHHHHH---------------HhhCCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCcc
Q 039839 84 AKCVGIE----PFTIAM---------------DLEGSDS--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGR 139 (825)
Q Consensus 84 ~~~t~~e----nl~l~l---------------d~~g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~ 139 (825)
+...... ++.... +..|... .........+|+||++||+|++ ++|||||||++||+
T Consensus 74 q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred cccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 7643211 111100 0111110 0001112334999999999999 99999999999999
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCccccccccc
Q 039839 140 EQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNTPLSEFFNV 213 (825)
Q Consensus 140 Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~~l~d~f~~ 213 (825)
+. +..+++++.++.++.|+|||+||||++.+. ..||++++++ |+|+..|+++++..+..+.++|+.
T Consensus 154 ~~------~~~l~~~L~~~~~~~g~tiiivsH~~~~i~-~~~d~i~~l~-~~i~~~g~~~~~~~~~~~~~~~~~ 219 (251)
T PRK09544 154 NG------QVALYDLIDQLRRELDCAVLMVSHDLHLVM-AKTDEVLCLN-HHICCSGTPEVVSLHPEFISMFGP 219 (251)
T ss_pred HH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEC-CceEeeCCHHHHhCCHHHHHHhCC
Confidence 99 999999999997655899999999998773 5799999996 579999987776655555555543
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8e-27 Score=249.05 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=144.7
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
..+|+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||+++|+|+. .+.+|+.
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTF--PAGKVTGLIGHNGSGKSTLLKMLGRHQ----PPSEGEILLDAQPLESWS 79 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCEehhhCC
Confidence 357999999999975 56899999999 999999999999999999999999994 4555541
Q ss_pred ----cceeeEEcCCC------ccchhHHHHHH-hhC---CChhh---hhh-----------------hhhHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC------VGIEPFTIAMD-LEG---SDSRE---RGE-----------------DDTTFEKQSALFA 121 (825)
Q Consensus 76 ----q~~~G~~~~~~------t~~enl~l~ld-~~g---~~~~e---r~e-----------------~~~~~ErQRv~iA 121 (825)
+..+|++++.. ++.+|+.+... ..+ ..... +.. ....+|+||++||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 12467776652 44566654321 000 00000 000 1122399999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
+|++ +||||||||++||+.. ++.+.+++.++.++.|+|||+||||++.+. ..||++++|++|+|+..|++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~l~~~~~~tiii~sH~~~~i~-~~~d~i~~l~~G~i~~~~~~ 232 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAH------QVDVLALVHRLSQERGLTVIAVLHDINMAA-RYCDYLVALRGGEMIAQGTP 232 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCeEEEecCH
Confidence 9999 9999999999999999 999999999997655899999999998773 58999999999999999887
Q ss_pred ccccCCcccccccc
Q 039839 199 PQTLKNTPLSEFFN 212 (825)
Q Consensus 199 ~e~l~~~~l~d~f~ 212 (825)
.++.....+..+|+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (265)
T PRK10575 233 AELMRGETLEQIYG 246 (265)
T ss_pred HHhcCHHHHHHHhC
Confidence 66654433444443
No 130
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=9.7e-27 Score=239.72 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=131.3
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+.. ..++.++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISI--SAGEFVFLVGPSGAGKSTLLKLIYKEE----LPTSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcccCCHHH
Confidence 4689999999642 46899999999 999999999999999999999999994 4555541
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa 125 (825)
+..++++++. .++.+|+.+.....+....+..+ ....+|+||++||+|++
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH
Confidence 1236777654 46677777654433322111111 11223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
++|||||||++||+.. +..+.+.++++.++ |+|+|+||||++.+. .+||++++|++|++
T Consensus 153 ~~p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tiiivtH~~~~~~-~~~d~i~~l~~G~~ 214 (214)
T cd03292 153 NSPTILIADEPTGNLDPDT------TWEIMNLLKKINKA-GTTVVVATHAKELVD-TTRHRVIALERGKL 214 (214)
T ss_pred cCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HhCCEEEEEeCCcC
Confidence 9999999999999999 99999999999765 899999999998774 57999999999874
No 131
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=1.1e-26 Score=245.93 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=138.6
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSV--AAGEKVALIGPSGSGKSTILRILMTLE----PIDEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccccccc
Confidence 478999999975 56899999999 999999999999999999999999994 3444431
Q ss_pred --------------cceeeEEcCC------CccchhHHHHHH-hhCCChhhhh--------------------hhhhHHH
Q 039839 76 --------------QTTKGIWIAK------CVGIEPFTIAMD-LEGSDSRERG--------------------EDDTTFE 114 (825)
Q Consensus 76 --------------q~~~G~~~~~------~t~~enl~l~ld-~~g~~~~er~--------------------e~~~~~E 114 (825)
+..+|++++. .++.+|+.+... ..+....... .....+|
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 2246777654 345667665321 1122111110 0112239
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
+||++||+|++ ++|||||||++||+.. +..+++.++++.++.|+|+|+||||++.+. .+||++++|++|+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~-~~~d~i~~l~~G~ 224 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPEL------VGEVLNVIRRLASEHDLTMLLVTHEMGFAR-EFADRVCFFDKGR 224 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHH-HhcCEEEEEECCE
Confidence 99999999999 9999999999999999 999999999998755899999999998763 4799999999999
Q ss_pred EEEecCcccccC
Q 039839 192 IWDAVPKPQTLK 203 (825)
Q Consensus 192 I~~~g~~~e~l~ 203 (825)
++..|++.+++.
T Consensus 225 i~~~g~~~~~~~ 236 (252)
T TIGR03005 225 IVEQGKPDEIFR 236 (252)
T ss_pred EEEeCCHHHHhc
Confidence 999888666543
No 132
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=1.3e-26 Score=240.63 Aligned_cols=169 Identities=11% Similarity=0.127 Sum_probs=133.5
Q ss_pred eEEEEEeEEEe-cCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEF-NVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y-~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|+++.| +. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 ~l~~~~l~~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~ 71 (222)
T PRK10908 1 MIRFEHVSKAYLGG---RQALQGVTFHM--RPGEMAFLTGHSGAGKSTLLKLICGIE----RPSAGKIWFSGHDITRLKN 71 (222)
T ss_pred CEEEEeeEEEecCC---CeEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccCCh
Confidence 48999999999 44 56899999999 999999999999999999999999994 4555541
Q ss_pred ------cceeeEEcCCC------ccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALA 123 (825)
Q Consensus 76 ------q~~~G~~~~~~------t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArA 123 (825)
+..+||+++.. ++.+|+.+.....+....+..+. ....||||++||+|
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 72 REVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred hHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 12467776543 44667766543333222111111 12239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++ ++|||||||++||+.. +..+.+.+.++.++ +.|+|+||||++.+. ..||+++++++|+++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDAL------SEGILRLFEEFNRV-GVTVLMATHDIGLIS-RRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEcc
Confidence 99 9999999999999999 99999999999765 899999999998774 5799999999999864
No 133
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.3e-27 Score=243.84 Aligned_cols=181 Identities=17% Similarity=0.150 Sum_probs=137.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+. .. .++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 1 ~l~~~~l~~~~~~---~~--~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 1 MLKLTDITWLYHH---LP--MRFDLTV--ERGERVAILGPSGAGKSTLLNLIAGFL----TPASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred CeEEEEEEEEECC---cc--ceeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCeecCcCChh
Confidence 4899999999975 22 2799999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCCC------ccchhHHHHHHhh-CCCh--hhhhh-----------------hhhHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAKC------VGIEPFTIAMDLE-GSDS--RERGE-----------------DDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~~------t~~enl~l~ld~~-g~~~--~er~e-----------------~~~~~ErQRv~iArALa---~ 126 (825)
...+||+++.. ++.+|+.+..... .... .++.. ....+|+||++||+|++ +
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 13467776653 4566665432210 0000 00000 01123999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCcc
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNTP 206 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~~ 206 (825)
+|||||||+|||.+. ++.+.+++.++.++.|+|+|+||||++.+. .+||+++++++|++...|++.+......
T Consensus 150 lllLDEP~~gLD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~~g~i~~~g~~~~~~~~~~ 222 (232)
T PRK10771 150 ILLLDEPFSALDPAL------RQEMLTLVSQVCQERQLTLLMVSHSLEDAA-RIAPRSLVVADGRIAWDGPTDELLSGKA 222 (232)
T ss_pred EEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEEEEEECCEEEEeCCHHHHHhChh
Confidence 999999999999999 999999999997655899999999998764 5799999999999999988766654443
Q ss_pred c
Q 039839 207 L 207 (825)
Q Consensus 207 l 207 (825)
+
T Consensus 223 ~ 223 (232)
T PRK10771 223 S 223 (232)
T ss_pred H
Confidence 3
No 134
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=9.4e-27 Score=247.87 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=138.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|++ ..+++++++.+ .+|++++|+|||||||||||++|+|+..+.- +.+|+.
T Consensus 3 ~~l~~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~-~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ---HQALHAVDLNI--HHGEMVALLGPSGSGKSTLLRHLSGLITGDK-SAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC---eEEEecceEEE--cCCcEEEEECCCCCCHHHHHHHHhccCCCCC-CCceEEEECCEecccccc
Confidence 48999999999976 56899999999 9999999999999999999999999954211 012320
Q ss_pred --------cceeeEEcCC------CccchhHHHHHHhh--------CCChhhhhhh--------------------hhHH
Q 039839 76 --------QTTKGIWIAK------CVGIEPFTIAMDLE--------GSDSRERGED--------------------DTTF 113 (825)
Q Consensus 76 --------q~~~G~~~~~------~t~~enl~l~ld~~--------g~~~~er~e~--------------------~~~~ 113 (825)
+..+||+++. .++.+|+.+..... +....+.... ...+
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 1246777665 35566665532100 0001110001 1223
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
||||++||||++ +||||||||+|||.+. ++.+.+.|+++.++.|+|||++|||++.+. .+||+++++++|
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~tH~~~~~~-~~~d~i~~l~~g 229 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPES------ARIVMDTLRDINQNDGITVVVTLHQVDYAL-RYCERIVALRQG 229 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECC
Confidence 999999999999 9999999999999999 999999999998655899999999998763 589999999999
Q ss_pred eEEEecCcccc
Q 039839 191 KIWDAVPKPQT 201 (825)
Q Consensus 191 kI~~~g~~~e~ 201 (825)
++...|++.+.
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999886653
No 135
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.4e-26 Score=238.46 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=132.5
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+| +++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i--~~g-~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTL--GPG-MYGLLGPNGAGKTTLMRILATLT----PPSSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEE--cCC-cEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCCccccchHHH
Confidence 478999999976 46899999999 889 99999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa---~ 126 (825)
+..++++++. .++.+|+.+.....+....+..+ ....+||||++||+|++ +
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 2346777654 35567776654333322111111 11223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
+|||||||++||+.. +..+.+++.++.+ +.|+|+||||++.+. .+||+++++++|+++..|
T Consensus 151 llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~-~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 151 ILIVDEPTAGLDPEE------RIRFRNLLSELGE--DRIVILSTHIVEDVE-SLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEcCCHHHHH-HhCCEEEEEECCEEEecC
Confidence 999999999999999 9999999999975 489999999998773 579999999999998654
No 136
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=8.3e-27 Score=247.49 Aligned_cols=186 Identities=16% Similarity=0.151 Sum_probs=142.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+..|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTA--PPGSLTGLLGPNGSGKSTLLRLLAGAL----RPDAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCEEcccCCHHH
Confidence 689999999976 56999999999 999999999999999999999999994 4555641
Q ss_pred -cceeeEEcCCC------ccchhHHHHHH----hhCCChhhhhhh--------------------hhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC------VGIEPFTIAMD----LEGSDSRERGED--------------------DTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~~------t~~enl~l~ld----~~g~~~~er~e~--------------------~~~~ErQRv~iArAL 124 (825)
...+||+++.. ++.+|+.+... ..+....+..+. ...+|+||++||+|+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 12467776653 45677665321 111111111101 112299999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +++||||||++||+.. +..+.++++++.++ |+|||++|||++.+. .+||++++|++|+++..|+.++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRA------QLETLALVRELAAT-GVTVVAALHDLNLAA-SYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred hcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCEEEEEeCCCEEEecCHHHh
Confidence 9 9999999999999999 99999999999765 899999999998873 58999999999999999987665
Q ss_pred cCCcccccccc
Q 039839 202 LKNTPLSEFFN 212 (825)
Q Consensus 202 l~~~~l~d~f~ 212 (825)
.....+...|+
T Consensus 225 ~~~~~~~~~~~ 235 (256)
T TIGR03873 225 LTPALIRAVYG 235 (256)
T ss_pred hCHHHHHHHhC
Confidence 54333344443
No 137
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=245.82 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=141.8
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGR----------- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~----------- 74 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+.. .+.+|+
T Consensus 10 ~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 10 QPQIKVENLNLWYGE---KQALKNVSMQI--PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred ceeEEEeeeEEEeCC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 357999999999975 56899999999 9999999999999999999999999853210 023443
Q ss_pred ------ccceeeEEcCC-----CccchhHHHHHHhhCCChhh------------------------hhhhhhHHHHHHHH
Q 039839 75 ------SQTTKGIWIAK-----CVGIEPFTIAMDLEGSDSRE------------------------RGEDDTTFEKQSAL 119 (825)
Q Consensus 75 ------~q~~~G~~~~~-----~t~~enl~l~ld~~g~~~~e------------------------r~e~~~~~ErQRv~ 119 (825)
.+..+||+++. .++.+|+.+.....+....+ .......+|+||++
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 02346777654 35567777654332322110 00112234999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|||||+ ++|||||||++||++. +..+.++++++. + ++|||+||||++.+. .+||++++|++|+++..|
T Consensus 165 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~-~-~~tiiivsH~~~~~~-~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPIS------TARIEDLIMNLK-K-DYTIVIVTHNMQQAA-RISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-h-CCEEEEEECCHHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 999999999995 3 799999999998763 589999999999999998
Q ss_pred CcccccC
Q 039839 197 PKPQTLK 203 (825)
Q Consensus 197 ~~~e~l~ 203 (825)
++++++.
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14268 236 QTRQIFH 242 (258)
T ss_pred CHHHHhc
Confidence 8766543
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=1.7e-26 Score=243.77 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=139.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~------------ 75 (825)
||+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. ....+|+.
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDI--PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEE--CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 4899999999976 46899999999 999999999999999999999999995321 00004531
Q ss_pred -----cceeeEEcCC-----CccchhHHHHHHhhCC-Chhh---h---------------------hhhhhHHHHHHHHH
Q 039839 76 -----QTTKGIWIAK-----CVGIEPFTIAMDLEGS-DSRE---R---------------------GEDDTTFEKQSALF 120 (825)
Q Consensus 76 -----q~~~G~~~~~-----~t~~enl~l~ld~~g~-~~~e---r---------------------~e~~~~~ErQRv~i 120 (825)
+..+||+++. .++.+|+.+.....+. ...+ + ......+||||++|
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred chHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 1346777665 3556777665433321 1110 0 01122349999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|+|++ ++|||||||++||+.. +..++++++++.+ +.|+|+||||++.+. ..||++++|++|++...|+
T Consensus 156 aral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~-~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIA------TGKIEELIQELKK--KYTIVIVTHNMQQAA-RISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--cCeEEEEecCHHHHH-HhCCEEEEEECCEEEEeCC
Confidence 99999 9999999999999999 9999999999975 489999999998763 5799999999999999988
Q ss_pred cccccC
Q 039839 198 KPQTLK 203 (825)
Q Consensus 198 ~~e~l~ 203 (825)
+++.+.
T Consensus 227 ~~~~~~ 232 (247)
T TIGR00972 227 TEQIFT 232 (247)
T ss_pred HHHHHh
Confidence 766543
No 139
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=1.4e-26 Score=258.83 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=135.3
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------------------cceeeE
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------------------QTTKGI 81 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------------------q~~~G~ 81 (825)
..++++++|.+ .+|++++|+|||||||||||++|+|+. .|.+|+. ...+||
T Consensus 37 ~~~l~~vsf~i--~~Gei~~I~G~nGsGKSTLlr~L~Gl~----~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 37 VVGVANASLDI--EEGEICVLMGLSGSGKSSLLRAVNGLN----PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred EEEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 34689999999 999999999999999999999999995 3444420 135788
Q ss_pred EcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH---HHheecC
Q 039839 82 WIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA---DIVLINM 132 (825)
Q Consensus 82 ~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa---~VLLLDE 132 (825)
++|. .++.+|+.+.....|.+..++.+.+ ..+||||++|||||+ +||||||
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 7654 4678888887665554433322221 122999999999999 9999999
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 133 PtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
||++||+.. +..+++.+.++.++.++|+||||||++++ +.+||++++|++|+++..|++++++.
T Consensus 191 Pts~LD~~~------r~~l~~~L~~l~~~~~~TII~iTHdl~e~-~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 191 PFSALDPLI------RTQLQDELLELQAKLNKTIIFVSHDLDEA-LKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred CCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999 99999999999876689999999999887 36899999999999999999877754
No 140
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=264.01 Aligned_cols=189 Identities=18% Similarity=0.181 Sum_probs=149.0
Q ss_pred ceEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
++|+|+|+++.|.... ...+++++||.+ .+||++||+|.|||||||+.++|.|+........+|+.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v--~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEV--EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEe--cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 4899999999996432 236899999999 99999999999999999999999999754332234541
Q ss_pred --------cceeeEEcCCCccchh--------HHHHHHhh-------------------CCChhhhh----hhhhHHHHH
Q 039839 76 --------QTTKGIWIAKCVGIEP--------FTIAMDLE-------------------GSDSRERG----EDDTTFEKQ 116 (825)
Q Consensus 76 --------q~~~G~~~~~~t~~en--------l~l~ld~~-------------------g~~~~er~----e~~~~~ErQ 116 (825)
...++++||.+...-| +.-.+..+ |.+..++. .....+|||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 2568899987533111 22222222 22222221 112334999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
||.||+||+ ++||+||||++||... +..|+++|+++.++.|+++||||||++.+. ++||||++|++|+++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~------q~qIL~llk~l~~e~g~a~l~ITHDl~Vva-~~aDrv~Vm~~G~iV 234 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTT------QAQILDLLKDLQRELGMAVLFITHDLGVVA-ELADRVVVMYKGEIV 234 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHH------HHHHHHHHHHHHHHcCcEEEEEcCCHHHHH-HhcCeEEEEECCEEE
Confidence 999999999 9999999999999999 999999999999888999999999999884 689999999999999
Q ss_pred EecCcccccCCc
Q 039839 194 DAVPKPQTLKNT 205 (825)
Q Consensus 194 ~~g~~~e~l~~~ 205 (825)
+.|++++++.+.
T Consensus 235 E~G~~~~i~~~p 246 (539)
T COG1123 235 ETGPTEEILSNP 246 (539)
T ss_pred EecCHHHHHhcc
Confidence 999999987643
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.4e-26 Score=238.34 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=129.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
|+++|++++|+. .. .++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+. .
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~gl~----~~~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTF--AQGEITAIVGPSGSGKSTLLNLIAGFE----TPQSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcCcCCHhH
Confidence 468999999975 22 2899999 999999999999999999999999994 4555641 1
Q ss_pred ceeeEEcCCC------ccchhHHHHHHhh-CCCh--hhhhh-----------------hhhHHHHHHHHHHHHHH---HH
Q 039839 77 TTKGIWIAKC------VGIEPFTIAMDLE-GSDS--RERGE-----------------DDTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~~~~~------t~~enl~l~ld~~-g~~~--~er~e-----------------~~~~~ErQRv~iArALa---~V 127 (825)
..+|++++.. ++.+|+.+..... +... .++.. ....+||||++||+|++ ++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 2467876653 4566665543211 1010 00000 11223999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|||||||++||++. +..+.+.++++.++.|+|+|+||||++.+. .+||+++++++|+++..|
T Consensus 150 lllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPAL------RAEMLDLVLDLHAETKMTVLMVTHQPEDAK-RLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hhhCEEEEEECCEEeecC
Confidence 99999999999999 999999999997655899999999998774 579999999999997643
No 142
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=1.4e-26 Score=238.15 Aligned_cols=166 Identities=19% Similarity=0.172 Sum_probs=128.0
Q ss_pred EEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------------
Q 039839 11 QLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------------- 75 (825)
Q Consensus 11 el~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------------- 75 (825)
+++|+++.|+... +.+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~~~~l~~~~~~~~-~~il~~vs~~i--~~G~~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGA-RPALDDISLTI--KKGEFVLIVGPNGSGKSTLLRLLNGLL----GPTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCC-eeeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEcccCCHHHH
Confidence 3689999996521 35899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhh--------------------hhhhHHHHHHHHHHHHHH---
Q 039839 76 QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERG--------------------EDDTTFEKQSALFALAIA--- 125 (825)
Q Consensus 76 q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~--------------------e~~~~~ErQRv~iArALa--- 125 (825)
+..+||+++.. ++.+|+.+.....+....... .....+||||++||||++
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 13467776643 445666554332222211100 111233999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
++|||||||++||++. +..+++.+.++.++ |+|+|+||||++.+. .+||+++++++|+
T Consensus 154 ~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~-~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAG------RRELLELLKKLKAE-GKTIIIVTHDLDLLL-ELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HhCCEEEEEeCCC
Confidence 9999999999999999 99999999999876 899999999998774 4799999999884
No 143
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.5e-27 Score=249.61 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=136.9
Q ss_pred EEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------------
Q 039839 11 QLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------------- 75 (825)
Q Consensus 11 el~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------------- 75 (825)
.+.|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~L~Gl~----~p~~G~i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDV--REGEIFVIMGLSGSGKSTLLRCINRLI----EPTSGKVLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEccccChhhh
Confidence 45677777765 56899999999 999999999999999999999999994 4444531
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa 125 (825)
...+|++++. .++.+|+.+.....+.......+ ....+||||++||+|++
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 1246777654 35567776654333322211111 11223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||+|||+.. +..+.+++.++.++.|.|+|++|||++.+. .+||++++|++|+++..|++.+++
T Consensus 177 ~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiii~tH~~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 177 VDPDILLMDEAFSALDPLI------RREMQDELLRLQAELQKTIVFITHDLDEAL-RLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred cCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999 999999999997655899999999997763 589999999999999988766554
No 144
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=1.3e-26 Score=239.13 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=129.1
Q ss_pred EEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------cceee
Q 039839 11 QLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------QTTKG 80 (825)
Q Consensus 11 el~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------q~~~G 80 (825)
+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. +..+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~p~~G~i~~~g~~~~~~~~~i~ 71 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEV--KPGEFLAIVGPNGAGKSTLLKAILGL----LKPTSGSIRVFGKPLEKERKRIG 71 (213)
T ss_pred CcccceeEECC---EEeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCCEEEECCccHHHHHhheE
Confidence 36789999976 46899999999 99999999999999999999999999 45666652 23578
Q ss_pred EEcCC--------CccchhHHHHHHhhC----CChhhhhhh--------------------hhHHHHHHHHHHHHHH---
Q 039839 81 IWIAK--------CVGIEPFTIAMDLEG----SDSRERGED--------------------DTTFEKQSALFALAIA--- 125 (825)
Q Consensus 81 ~~~~~--------~t~~enl~l~ld~~g----~~~~er~e~--------------------~~~~ErQRv~iArALa--- 125 (825)
|+++. .++.+|+.+.....+ .......+. ...+||||++||+|++
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 88764 245666655432111 011110011 1123999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
++|||||||++||++. +..+.+.++++.++ |+|+|+||||++.+. .+||++++|++| +++.
T Consensus 152 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~sH~~~~~~-~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 152 DLLLLDEPFAGVDPKT------QEDIYELLRELRRE-GMTILVVTHDLGLVL-EYFDRVLLLNRT-VVAS 212 (213)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-HhcCEEEEEcCc-Eeec
Confidence 9999999999999999 99999999999874 899999999998773 579999999875 5544
No 145
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=243.87 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=140.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~----------- 75 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+ ...+.+|+.
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSI--PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 47999999999976 56899999999 99999999999999999999999998531 000123431
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCC-Chhh---h---------------------hhhhhHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGS-DSRE---R---------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~-~~~e---r---------------------~e~~~~~ErQRv~ 119 (825)
+..+||+++.. ++.+|+.+.....+. ...+ + ......+|+||++
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred cCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 23467876653 556777665433332 1110 0 0011233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||++++ ++|||||||++||+.. +..+.+.+.++.+ +.|+|+||||++.+. .+||++++|++|++...|
T Consensus 166 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivtH~~~~~~-~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVS------TRKIEELILKLKE--KYTIVIVTHNMQQAA-RVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEEcCHHHHH-HhCCEEEEEECCEEEEEC
Confidence 999999 9999999999999999 9999999999864 689999999998763 589999999999999999
Q ss_pred CcccccC
Q 039839 197 PKPQTLK 203 (825)
Q Consensus 197 ~~~e~l~ 203 (825)
++++++.
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14274 237 DTNKMFS 243 (259)
T ss_pred CHHHHhh
Confidence 8777654
No 146
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-26 Score=242.82 Aligned_cols=183 Identities=15% Similarity=0.124 Sum_probs=142.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~----------- 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. ..+.+|+.
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPI--YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 58999999999975 56899999999 999999999999999999999999985320 00134430
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCCC-hhh---h---------------------hhhhhHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGSD-SRE---R---------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~~-~~e---r---------------------~e~~~~~ErQRv~ 119 (825)
...+||+++.. ++.+|+.+.....+.. ..+ + ......+||||++
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 23467876653 5567776654333321 100 0 0111233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+|++ +||||||||+|||+.. +..+.++++++.+ +.|+|+||||++.+. ..||+++++++|+++..|
T Consensus 158 laral~~~p~llllDEP~~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~-~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPIS------TLKIEDLMVELKK--EYTIVIVTHNMQQAS-RVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEEcCHHHHH-HhcCEEEEEECCeEEEeC
Confidence 999999 9999999999999999 9999999999865 589999999998764 579999999999999999
Q ss_pred CcccccCC
Q 039839 197 PKPQTLKN 204 (825)
Q Consensus 197 ~~~e~l~~ 204 (825)
++++++.+
T Consensus 229 ~~~~~~~~ 236 (251)
T PRK14270 229 KTEKIFLE 236 (251)
T ss_pred CHHHHhcC
Confidence 88776554
No 147
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=242.07 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=140.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
|+++++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+|+|+|+..+ ..|.+|+.
T Consensus 1 ~~~~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 1 MIAKTTNLNLFYGK---KQALFDINMQI--EQNKITALIGASGCGKSTFLRCFNRMNDK-IAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred CceeeeeeEEEECC---EeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCCceEEEECCEecccCCH
Confidence 46999999999976 56899999999 99999999999999999999999998421 12345541
Q ss_pred ---cceeeEEcCCC-----ccchhHHHHHHhhCCC--hhh---h---------------------hhhhhHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-----VGIEPFTIAMDLEGSD--SRE---R---------------------GEDDTTFEKQSALFA 121 (825)
Q Consensus 76 ---q~~~G~~~~~~-----t~~enl~l~ld~~g~~--~~e---r---------------------~e~~~~~ErQRv~iA 121 (825)
...+||+++.. ++.+|+.+.....+.. ... + .......|+||++||
T Consensus 75 ~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 23468877664 5567776543222210 000 0 011233499999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||++ ++|||||||++||+.. +..+.+.+.++. + ++|+|+||||++.+. ..||+++++++|+++..|++
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~-~~~d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPIS------SGVIEELLKELS-H-NLSMIMVTHNMQQGK-RVADYTAFFHLGELIEFGES 225 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHh-C-CCEEEEEecCHHHHH-hhCcEEEEEECCEEEEECCH
Confidence 9999 9999999999999999 999999999986 3 799999999998763 58999999999999999886
Q ss_pred cccc
Q 039839 199 PQTL 202 (825)
Q Consensus 199 ~e~l 202 (825)
.+.+
T Consensus 226 ~~~~ 229 (246)
T PRK14269 226 KEFF 229 (246)
T ss_pred HHHH
Confidence 6654
No 148
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.6e-26 Score=244.39 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=145.3
Q ss_pred CCCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCcc------
Q 039839 3 MADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGRS------ 75 (825)
Q Consensus 3 M~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~~------ 75 (825)
|+.+..+|+++|+++.|+. +.+++++++.+ .+|++++|+|||||||||||++|+|+..+.. .+.+|+.
T Consensus 14 ~~~~~~~l~~~nl~~~~~~---~~il~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 88 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYGK---KEAIKGIDMQF--EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGID 88 (267)
T ss_pred cCCCCeEEEEeeEEEEECC---eeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEE
Confidence 5566678999999999975 57999999999 9999999999999999999999999853100 1244531
Q ss_pred -----------cceeeEEcCC-----CccchhHHHHHHhhCCC-hhhhh------------------------hhhhHHH
Q 039839 76 -----------QTTKGIWIAK-----CVGIEPFTIAMDLEGSD-SRERG------------------------EDDTTFE 114 (825)
Q Consensus 76 -----------q~~~G~~~~~-----~t~~enl~l~ld~~g~~-~~er~------------------------e~~~~~E 114 (825)
+..+|++++. .++.+|+.+.....+.. ..+.. .....+|
T Consensus 89 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQ 168 (267)
T ss_pred cccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHH
Confidence 2346777665 35577777654332321 11100 0112349
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
+||++||||++ ++|||||||++||+.. +..+.+++.++. + +.|||+||||++.+. .+||++++|++|+
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~-~~~d~i~~l~~G~ 239 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPIS------TMQLEETMFELK-K-NYTIIIVTHNMQQAA-RASDYTAFFYLGD 239 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCEEEEEecCHHHHH-HhcCEEEEEECCE
Confidence 99999999999 9999999999999999 999999999995 3 689999999998763 5899999999999
Q ss_pred EEEecCcccccC
Q 039839 192 IWDAVPKPQTLK 203 (825)
Q Consensus 192 I~~~g~~~e~l~ 203 (825)
++..|++.+++.
T Consensus 240 i~~~g~~~~~~~ 251 (267)
T PRK14237 240 LIEYDKTRNIFT 251 (267)
T ss_pred EEEeCCHHHHhc
Confidence 999998776644
No 149
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=266.67 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=140.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+||+++|++++|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 3 ALLQLKGIDKAFPG---VKALSGAALNV--YPGRVMALVGENGAGKSTMMKVLTGIY----TRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred ceEEEeeeEEEeCC---eEEeeeeeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCH
Confidence 47999999999976 56899999999 999999999999999999999999994 4445541
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhh---C-CChhhhh--------------------hhhhHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLE---G-SDSRERG--------------------EDDTTFEKQSALFA 121 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~---g-~~~~er~--------------------e~~~~~ErQRv~iA 121 (825)
+..+|+++|. .++.+|+.+..... + .+..+.. .....+|||||+||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 1347888765 35667776543221 1 1111100 11223399999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
+||+ ++|||||||++||++. +..+++++.++.++ |+|||+||||++.+. .+||++++|++|+++..+++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvii~sHd~~~~~-~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTE------TESLFRVIRELKSQ-GRGIVYISHRLKEIF-EICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEeCCEEEEecCc
Confidence 9999 9999999999999999 99999999999765 899999999998773 58999999999999998876
Q ss_pred ccc
Q 039839 199 PQT 201 (825)
Q Consensus 199 ~e~ 201 (825)
++.
T Consensus 226 ~~~ 228 (501)
T PRK10762 226 ADL 228 (501)
T ss_pred CcC
Confidence 654
No 150
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=274.00 Aligned_cols=188 Identities=14% Similarity=0.096 Sum_probs=145.0
Q ss_pred cceEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcC--CCc---------
Q 039839 7 CCCMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAF--RGR--------- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~--~G~--------- 74 (825)
.++|+++|+++.|+... -..++++++|.+ .+|+++||+||||||||||+|+|+|+..+.-+.. .|.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v--~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSL--QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 35899999999996311 136899999999 9999999999999999999999999954321110 110
Q ss_pred --------------ccceeeEEcCCC--------ccchhHHHHHHhh-CCChhhh-----------------------hh
Q 039839 75 --------------SQTTKGIWIAKC--------VGIEPFTIAMDLE-GSDSRER-----------------------GE 108 (825)
Q Consensus 75 --------------~q~~~G~~~~~~--------t~~enl~l~ld~~-g~~~~er-----------------------~e 108 (825)
....+|+++|.. ++.+|+.+.+... +.+..+. ..
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 012578887753 5567877765432 3222111 11
Q ss_pred hhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEE
Q 039839 109 DDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPIL 185 (825)
Q Consensus 109 ~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvl 185 (825)
....+|||||+||+||+ +||||||||++||+.. +..+.++++++.++.|+|||+||||++.+. .+||+|+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~------~~~l~~ll~~l~~~~g~tvi~itHdl~~~~-~~adri~ 240 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTI------QAQILQLIKVLQKEMSMGVIFITHDMGVVA-EIADRVL 240 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-HhCCEEE
Confidence 12334999999999999 9999999999999999 999999999998666899999999998773 5899999
Q ss_pred EEeCCeEEEecCcccccC
Q 039839 186 REDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 186 vl~~GkI~~~g~~~e~l~ 203 (825)
+|++|+|+..|++.+++.
T Consensus 241 vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 241 VMYQGEAVETGSVEQIFH 258 (623)
T ss_pred EeeCCeecccCCHHHhhc
Confidence 999999999888766543
No 151
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=2.7e-26 Score=239.17 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=137.1
Q ss_pred CCCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------
Q 039839 3 MADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------- 75 (825)
Q Consensus 3 M~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------- 75 (825)
|....++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~~~~~~~i~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~ 71 (225)
T PRK10247 1 MQENSPLLQLQNVGYLAGD---AKILNNISFSL--RAGEFKLITGPSGCGKSTLLKIVASLI----SPTSGTLLFEGEDI 71 (225)
T ss_pred CCCCCceEEEeccEEeeCC---ceeeeccEEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----CCCCCeEEECCEEc
Confidence 4455568999999999976 56899999999 999999999999999999999999984 4555641
Q ss_pred --------cceeeEEcCCC-----ccchhHHHHHHhhCCCh-hhhh------------------hhhhHHHHHHHHHHHH
Q 039839 76 --------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS-RERG------------------EDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~-~er~------------------e~~~~~ErQRv~iArA 123 (825)
+..+|++++.. ++.+|+.+.....+... .++. ......|+||++||+|
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred CcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 13467776543 55677765433222111 1110 1112239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe-CCeEEEecC
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED-IQKIWDAVP 197 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~-~GkI~~~g~ 197 (825)
++ ++|||||||++||+.. +..+.+++.++.++.|+|+|++|||++.+. .||++++++ ++..+.+|.
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sh~~~~~~--~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESN------KHNVNEIIHRYVREQNIAVLWVTHDKDEIN--HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECChHHHH--hCCEEEEEecccchHhhhh
Confidence 99 9999999999999999 999999999997655899999999998875 699999995 455555554
No 152
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=2.7e-26 Score=236.28 Aligned_cols=166 Identities=22% Similarity=0.254 Sum_probs=129.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i--~~G~~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTV--KKGEVVVIIGPSGSGKSTLLRCINLLE----EPDSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCccchhH
Confidence 478999999976 56899999999 999999999999999999999999994 4445531
Q ss_pred ---cceeeEEcCC------CccchhHHHHHH-hhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMD-LEGSDSRERGE--------------------DDTTFEKQSALFALAIA 125 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld-~~g~~~~er~e--------------------~~~~~ErQRv~iArALa 125 (825)
+..+||+++. .++.+|+.+... ..+.+..+..+ ....+|+||++||+|++
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 1246777654 355667665421 22222111111 11223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
++|||||||+|||+.. +..+.+.+.++.+. |+|+|++|||++.+. .+||+++++++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~-~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMVVVTHEMGFAR-EVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HhCCEEEEEeCCcC
Confidence 9999999999999999 99999999999865 899999999998773 58999999999874
No 153
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.1e-26 Score=244.01 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=143.5
Q ss_pred CCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC--cCCCc-------
Q 039839 4 ADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD--AFRGR------- 74 (825)
Q Consensus 4 ~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~--~~~G~------- 74 (825)
+..-.+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. + +..|.
T Consensus 2 ~~~~~~l~~~nl~~~~~~---~~il~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 2 SKLIPAIKVNNLSFYYDT---QKILEGVSMEI--YQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRVEGRVEFFNQN 75 (261)
T ss_pred CcccceEEEeeEEEEeCC---eeEeeceEEEE--cCCcEEEEECCCCCCHHHHHHHHhcccCCC-CCccccceEEECCEE
Confidence 333357999999999976 46899999999 999999999999999999999999996431 0 01231
Q ss_pred ----------ccceeeEEcCC-----CccchhHHHHHHhhCC-Chhh---hh---------------------hhhhHHH
Q 039839 75 ----------SQTTKGIWIAK-----CVGIEPFTIAMDLEGS-DSRE---RG---------------------EDDTTFE 114 (825)
Q Consensus 75 ----------~q~~~G~~~~~-----~t~~enl~l~ld~~g~-~~~e---r~---------------------e~~~~~E 114 (825)
.+..++++++. .++.+|+.+.....+. +..+ +. .....+|
T Consensus 76 i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 76 IYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred hhccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 12336676654 3556676654322222 1100 00 1122339
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC--
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI-- 189 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~-- 189 (825)
+||++||++++ +||||||||++||++. +..+.+.+.++..+.|.|+|+||||++.+. .+||++++|++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~------~~~l~~~l~~l~~~~~~tiiivsH~~~~i~-~~~d~i~~l~~~~ 228 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIA------SMKVESLIQSLRLRSELTMVIVSHNLHQVS-RLSDFTAFFKGNE 228 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHHH-HhcCEEEEEccCC
Confidence 99999999999 9999999999999999 999999999987545899999999998774 58999999999
Q ss_pred ---CeEEEecCcccccCC
Q 039839 190 ---QKIWDAVPKPQTLKN 204 (825)
Q Consensus 190 ---GkI~~~g~~~e~l~~ 204 (825)
|+++..|++++++.+
T Consensus 229 ~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 229 NRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred CcCceEEEeCCHHHHHhC
Confidence 999999988776554
No 154
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=3.4e-26 Score=240.16 Aligned_cols=176 Identities=17% Similarity=0.133 Sum_probs=134.7
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+.. ..|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTV--KKGEIHAIMGPNGSGKSTLSKTIAGHPS--YEVTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCcceEEECCEecCCCCHHH
Confidence 478999999975 56899999999 9999999999999999999999999831 12444531
Q ss_pred --cceeeEEcCCC------ccchhHHHHHHhh-------------------------CCChh--hh-h-hhhhHHHHHHH
Q 039839 76 --QTTKGIWIAKC------VGIEPFTIAMDLE-------------------------GSDSR--ER-G-EDDTTFEKQSA 118 (825)
Q Consensus 76 --q~~~G~~~~~~------t~~enl~l~ld~~-------------------------g~~~~--er-~-e~~~~~ErQRv 118 (825)
...++++++.. ++.+++.+..... |.... .+ . .....+||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 11256666553 3455554432211 11100 00 0 11344599999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc-cCcEEEEeCCeEEE
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY-LEPILREDIQKIWD 194 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~-~drvlvl~~GkI~~ 194 (825)
+||+|++ ++|||||||++||+.. +..+.+++.++.++ |.|||+||||++.+. .. ||+++++++|+++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~-~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDA------LKIVAEGINRLREP-DRSFLIITHYQRLLN-YIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CcEEEEEEecHHHHH-hhcCCeEEEEeCCEEEE
Confidence 9999999 9999999999999999 99999999999764 899999999998774 46 89999999999998
Q ss_pred ecCccc
Q 039839 195 AVPKPQ 200 (825)
Q Consensus 195 ~g~~~e 200 (825)
.|++++
T Consensus 226 ~g~~~~ 231 (243)
T TIGR01978 226 SGDVEL 231 (243)
T ss_pred ecCHHH
Confidence 887653
No 155
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.2e-26 Score=241.42 Aligned_cols=182 Identities=16% Similarity=0.233 Sum_probs=139.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~----------- 75 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+. ..+.+|+.
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 3 FAIETVNLRVYYGS---NHVIKGVDLKI--PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred ceEEEEeEEEEeCC---eeeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 37999999999976 56899999999 999999999999999999999999995321 00123431
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhhCC--Chhh---h---------------------hhhhhHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLEGS--DSRE---R---------------------GEDDTTFEKQS 117 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~g~--~~~e---r---------------------~e~~~~~ErQR 117 (825)
+..+|++++. .++.+|+.+.....+. ...+ + .......||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQR 157 (253)
T ss_pred cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHH
Confidence 1246777665 3556777654332221 1100 0 01112239999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++||+|++ ++|||||||++||+.. +..+.++|+++.+ ++|+|++|||++.+. .+||+++++++|++..
T Consensus 158 v~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVG------TAKIEELLFELKK--EYTIVLVTHSPAQAA-RVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhh--CCEEEEEECCHHHHH-hhCCEEEEEECCEEEE
Confidence 99999999 9999999999999999 9999999999864 689999999998763 5799999999999999
Q ss_pred ecCcccccC
Q 039839 195 AVPKPQTLK 203 (825)
Q Consensus 195 ~g~~~e~l~ 203 (825)
.|++.+++.
T Consensus 229 ~~~~~~~~~ 237 (253)
T PRK14267 229 VGPTRKVFE 237 (253)
T ss_pred eCCHHHHHh
Confidence 988766543
No 156
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-26 Score=267.57 Aligned_cols=179 Identities=12% Similarity=0.132 Sum_probs=141.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+||+++|++++|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+..+ ++++|+.
T Consensus 4 ~~l~~~nl~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKALDNVSLKV--RAGEIVSLCGENGAGKSTLMKVLSGVYPH--GTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEeCC---eEeecceeEEE--eCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCCCeEEEECCEECCCCCH
Confidence 47999999999976 56999999999 99999999999999999999999999532 0245541
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhh--C-CChhhhh--------------------hhhhHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLE--G-SDSRERG--------------------EDDTTFEKQSALFAL 122 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~--g-~~~~er~--------------------e~~~~~ErQRv~iAr 122 (825)
+..+||++|. .++.+|+.+..... + .+..+.. .....+||||++||+
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 1347888765 35567776543321 1 1111110 111223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ ++|||||||++||++. +..+++++.++.++ |+|||+||||++.+. .+||+++++++|+|+..|+++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~-~~~d~v~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTESE------TAVLLDIIRDLKAH-GIACIYISHKLNEVK-AISDTICVIRDGRHIGTRPAA 228 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHH-HhcCEEEEEECCEEeeecccc
Confidence 999 9999999999999999 99999999999765 899999999998773 589999999999999998876
Q ss_pred cc
Q 039839 200 QT 201 (825)
Q Consensus 200 e~ 201 (825)
+.
T Consensus 229 ~~ 230 (506)
T PRK13549 229 GM 230 (506)
T ss_pred cC
Confidence 64
No 157
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=2e-26 Score=262.63 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=146.0
Q ss_pred cceEEEEEeEEEecCc--------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----
Q 039839 7 CCCMQLIDGNGEFNVD--------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR---- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~--------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~---- 74 (825)
.++++++|+++.|... ....++++|+|.+ .+||++||+|+||||||||.|+|+|+.. |..|.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l--~~GE~lglVGeSGsGKSTlar~i~gL~~----P~~G~i~~~ 351 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL--REGETLGLVGESGSGKSTLARILAGLLP----PSSGSIIFD 351 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEe--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEEe
Confidence 4678999999999631 1246799999999 9999999999999999999999999954 44333
Q ss_pred -------------ccceeeEEcCCC--------ccchhHHHHHHhhCCC-hhhhhhhhh---------------------
Q 039839 75 -------------SQTTKGIWIAKC--------VGIEPFTIAMDLEGSD-SRERGEDDT--------------------- 111 (825)
Q Consensus 75 -------------~q~~~G~~~~~~--------t~~enl~l~ld~~g~~-~~er~e~~~--------------------- 111 (825)
....+-++||++ ++.+.+..++...+.. ..++.+++.
T Consensus 352 g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elS 431 (539)
T COG1123 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELS 431 (539)
T ss_pred CcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcC
Confidence 112334555543 4455565555544332 222222221
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.+||||++|||||+ ++||+|||++.||+-. +..|.++|++|.++.|.|.||||||+..+. ..||||++|+
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsv------qa~VlnLl~~lq~e~g~t~lfISHDl~vV~-~i~drv~vm~ 504 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSV------QAQVLNLLKDLQEELGLTYLFISHDLAVVR-YIADRVAVMY 504 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHH-hhCceEEEEE
Confidence 12999999999999 9999999999999888 999999999999999999999999999985 7899999999
Q ss_pred CCeEEEecCcccccCC
Q 039839 189 IQKIWDAVPKPQTLKN 204 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~~ 204 (825)
.|+|++.|+.+.+++.
T Consensus 505 ~G~iVE~G~~~~v~~~ 520 (539)
T COG1123 505 DGRIVEEGPTEKVFEN 520 (539)
T ss_pred CCeEEEeCCHHHHhcC
Confidence 9999999987777654
No 158
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.9e-26 Score=240.44 Aligned_cols=181 Identities=15% Similarity=0.148 Sum_probs=140.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~~------------ 75 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+.. .+.+|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEI--PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 6999999999976 46899999999 9999999999999999999999999953210 1234541
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhhCC--Chhhh------------------------hhhhhHHHHHHHHH
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLEGS--DSRER------------------------GEDDTTFEKQSALF 120 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~g~--~~~er------------------------~e~~~~~ErQRv~i 120 (825)
+..+|+++|. .++.+|+.+.....+. ...+. ......+|+||++|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 2346777654 3457777665432221 11100 01122349999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|||++ ++|||||||++||+.. +..+.+.+.++. + |+|+|++|||++.+. ..||++++|++|++...|+
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPEN------TAKIESLFLELK-K-DMTIVLVTHFPQQAA-RISDYVAFLYKGQIVEWGP 228 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHH-HhcCEEEEEECCeEEEECC
Confidence 99999 9999999999999999 999999999985 3 799999999998763 5799999999999999988
Q ss_pred cccccC
Q 039839 198 KPQTLK 203 (825)
Q Consensus 198 ~~e~l~ 203 (825)
+.+++.
T Consensus 229 ~~~~~~ 234 (250)
T PRK14247 229 TREVFT 234 (250)
T ss_pred HHHHHc
Confidence 766543
No 159
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=2.8e-26 Score=228.04 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=122.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccc
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGI 89 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~ 89 (825)
|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+ ..|..|+.. ..|.-.......
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G~v~-~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSV--RRGEVHALLGENGAGKSTLMKILSGL----YKPDSGEIL-VDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCeEEE-ECCEECCcCCHH
Confidence 478999999976 46899999999 99999999999999999999999999 456667521 011100100000
Q ss_pred hhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEE
Q 039839 90 EPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL 166 (825)
Q Consensus 90 enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TI 166 (825)
+ ......+. .......|+||++||||++ ++|||||||++||.+. ++.+.+.++++.++ |.|+
T Consensus 71 ~---~~~~~i~~-----~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~-~~ti 135 (163)
T cd03216 71 D---ARRAGIAM-----VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE------VERLFKVIRRLRAQ-GVAV 135 (163)
T ss_pred H---HHhcCeEE-----EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CCEE
Confidence 0 00000000 0015677999999999999 9999999999999999 99999999999765 8999
Q ss_pred EEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 167 LFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 167 L~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
|++|||++.+. ..||+++++++|++++
T Consensus 136 ii~sh~~~~~~-~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 136 IFISHRLDEVF-EIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEeCCHHHHH-HhCCEEEEEECCEEEe
Confidence 99999997663 4799999999999864
No 160
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-26 Score=267.98 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=140.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTV--YPGEIHALLGENGAGKSTLMKVLSGIH----EPTKGTITINNINYNKLDH 74 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCc----CCCccEEEECCEECCCCCH
Confidence 47999999999976 56899999999 999999999999999999999999994 4455541
Q ss_pred ----cceeeEEcCCC------ccchhHHHHHH----hhCC---Chhhhh--------------------hhhhHHHHHHH
Q 039839 76 ----QTTKGIWIAKC------VGIEPFTIAMD----LEGS---DSRERG--------------------EDDTTFEKQSA 118 (825)
Q Consensus 76 ----q~~~G~~~~~~------t~~enl~l~ld----~~g~---~~~er~--------------------e~~~~~ErQRv 118 (825)
+..+||++|.. ++.+|+.+... ..+. +..+.. .....+|||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 12478887653 45566654321 1111 111110 11123399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+||+ +||||||||++||+.. +..++++|+++.++ |+|||+||||++.+. .+||+++++++|+++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsHd~~~~~-~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKE------VDYLFLIMNQLRKE-GTAIVYISHKLAEIR-RICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEeee
Confidence 9999999 9999999999999999 99999999999876 999999999998774 58999999999999999
Q ss_pred cCccccc
Q 039839 196 VPKPQTL 202 (825)
Q Consensus 196 g~~~e~l 202 (825)
|++++..
T Consensus 227 g~~~~~~ 233 (510)
T PRK09700 227 GMVSDVS 233 (510)
T ss_pred cchhhCC
Confidence 8876654
No 161
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.4e-26 Score=241.23 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=139.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~------------- 74 (825)
.|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+ ...+++|+
T Consensus 4 ~l~~~nl~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFGK---NHAVKDVSMDF--PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeCC---eeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 6999999999975 56999999999 99999999999999999999999998531 00012342
Q ss_pred ----ccceeeEEcCC------CccchhHHHHHHhhCC-Chh---hh---------------------hhhhhHHHHHHHH
Q 039839 75 ----SQTTKGIWIAK------CVGIEPFTIAMDLEGS-DSR---ER---------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 75 ----~q~~~G~~~~~------~t~~enl~l~ld~~g~-~~~---er---------------------~e~~~~~ErQRv~ 119 (825)
.+..+|++++. .++.+|+.+.....+. +.. ++ ......+|+||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 158 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC 158 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH
Confidence 12346777665 3556677654332221 110 00 0112234999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+|++ ++|||||||+|||+.. +..+.+.++++.+ ++|||+||||++.+. .+||+++++++|+|...|
T Consensus 159 laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~-~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 159 IARTIAVKPEVILMDEPASALDPIS------TLKIEELIEELKE--KYTIIIVTHNMQQAA-RVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh--CCcEEEEECCHHHHH-hhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 9999999999964 589999999998773 589999999999999999
Q ss_pred CcccccCC
Q 039839 197 PKPQTLKN 204 (825)
Q Consensus 197 ~~~e~l~~ 204 (825)
++++.+.+
T Consensus 230 ~~~~~~~~ 237 (252)
T PRK14256 230 ETKKIFTT 237 (252)
T ss_pred CHHHHHhC
Confidence 87765543
No 162
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=1.4e-26 Score=268.99 Aligned_cols=179 Identities=11% Similarity=0.058 Sum_probs=142.1
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 9 PPLLCARSISKQYSG---VEVLKGIDFTL--HAGEVHALLGGNGAGKSTLMKIIAGIV----PPDSGTLEIGGNPCARLT 79 (510)
T ss_pred CceEEEEeEEEEeCC---ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCCCC
Confidence 347999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred -----cceeeEEcCC------CccchhHHHHHH--------------hhCCCh--hhhhhhhhHHHHHHHHHHHHHH---
Q 039839 76 -----QTTKGIWIAK------CVGIEPFTIAMD--------------LEGSDS--RERGEDDTTFEKQSALFALAIA--- 125 (825)
Q Consensus 76 -----q~~~G~~~~~------~t~~enl~l~ld--------------~~g~~~--~er~e~~~~~ErQRv~iArALa--- 125 (825)
...+|+++|. .++.+|+.+... ..|... .........+|||||+||+||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1236788765 355666655321 112111 0111123445999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||++||+.. +..+.++|+++.++ |+|||+||||++.+. .+||++++|++|+|+..|++++..
T Consensus 160 ~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiivtHd~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 160 RILILDEPTASLTPAE------TERLFSRIRELLAQ-GVGIVFISHKLPEIR-QLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CEEEEECCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999 99999999999875 999999999998773 589999999999999998876654
No 163
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-26 Score=255.42 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=139.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||++ |++++|+. .. . ++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 ~l~~-~l~k~~~~---~~-~-~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~iaGl~----~p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 1 MLEL-NFKQQLGD---LC-L-TVNLTL--PAQGITAIFGRSGAGKTSLINAISGLT----RPQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred CeEE-EEEEEeCC---EE-E-EEEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccccc
Confidence 4788 99999976 22 2 899999 999999999999999999999999995 3444431
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHh------------hCCCh--hhhhhhhhHHHHHHHHHHHHHH---H
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDL------------EGSDS--RERGEDDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~------------~g~~~--~er~e~~~~~ErQRv~iArALa---~ 126 (825)
+..+||++|. .++.+|+.+.... .|... .........+||||++|||||+ +
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2346777654 4567777664321 12111 0011123344999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCcc
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNTP 206 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~~ 206 (825)
+|||||||++||+.. +..+++.|+++.++.|+|+|+||||++.+. .+||++++|++|+++..|++.+++.+..
T Consensus 149 llLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tii~vTHd~~~~~-~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 149 LLLMDEPLASLDLPR------KRELLPYLERLAREINIPILYVSHSLDEIL-RLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEecCHHHHH-HhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 999999999999999 999999999998766899999999998763 5899999999999999999888776543
No 164
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.6e-26 Score=240.94 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=141.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGR------------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~------------ 74 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+.. .+..|+
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDF--PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 47999999999976 56999999999 9999999999999999999999999954321 011243
Q ss_pred -----ccceeeEEcCCC-----ccchhHHHHHHhhCCChh----hhh---------------------hhhhHHHHHHHH
Q 039839 75 -----SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDSR----ERG---------------------EDDTTFEKQSAL 119 (825)
Q Consensus 75 -----~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~----er~---------------------e~~~~~ErQRv~ 119 (825)
.+..+||+++.. ++.+|+.+.....+.... +.. ......|+||++
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 123477876653 456777665433222110 000 011233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||||++ ++|||||||++||+.. +..+.+++.++. + +.|||+||||++.+. ..||+++++++|++...|
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tilivsh~~~~~~-~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVS------TMRIEELMQELK-Q-NYTIAIVTHNMQQAA-RASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHH-hhCCEEEEEeCCeEEEeC
Confidence 999999 9999999999999999 999999999984 4 799999999998774 579999999999999999
Q ss_pred CcccccCC
Q 039839 197 PKPQTLKN 204 (825)
Q Consensus 197 ~~~e~l~~ 204 (825)
++.++...
T Consensus 229 ~~~~~~~~ 236 (251)
T PRK14249 229 RTGEIFSR 236 (251)
T ss_pred CHHHHHhC
Confidence 87766544
No 165
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.1e-26 Score=240.43 Aligned_cols=182 Identities=18% Similarity=0.176 Sum_probs=140.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccc--ccCCcCCCc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNF--REMDAFRGR----------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~--~~~~~~~G~----------- 74 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+.. +. .+.+|+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK---KKALNSVSLDF--YPNEITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceEEECCEECcCc
Confidence 37999999999976 56899999999 9999999999999999999999999832 11 012343
Q ss_pred ------ccceeeEEcCC-----CccchhHHHHHHhhCCCh-hhhh------------------------hhhhHHHHHHH
Q 039839 75 ------SQTTKGIWIAK-----CVGIEPFTIAMDLEGSDS-RERG------------------------EDDTTFEKQSA 118 (825)
Q Consensus 75 ------~q~~~G~~~~~-----~t~~enl~l~ld~~g~~~-~er~------------------------e~~~~~ErQRv 118 (825)
.+..+|++++. .++.+|+.+.....+... .... .....+||||+
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred ccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH
Confidence 02347777665 356777776543333211 1000 01123399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+|++ ++|||||||++||++. +..++++|+++.+ ++|||+||||++.+. .+||+++++++|+++..
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~-~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPIS------AGKIEETLLGLKD--DYTMLLVTRSMQQAS-RISDRTGFFLDGDLIEY 228 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHH------HHHHHHHHHHHhh--CCeEEEEECCHHHHH-HhCCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 9999999999864 689999999997663 58999999999999999
Q ss_pred cCcccccCC
Q 039839 196 VPKPQTLKN 204 (825)
Q Consensus 196 g~~~e~l~~ 204 (825)
|++.+++..
T Consensus 229 g~~~~~~~~ 237 (252)
T PRK14239 229 NDTKQMFMN 237 (252)
T ss_pred CCHHHHHhC
Confidence 987776543
No 166
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=5.7e-26 Score=240.37 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=136.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+.. |.+|+.
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 2 PLLQVSGLSKSYGG---GKGCRDVSFDL--YPGEVLGIVGESGSGKSTLLGCLAGRLA----PDHGTATYIMRSGAELEL 72 (253)
T ss_pred ceEEEeeeEEEeCC---ceEeecceEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEEeccccccccc
Confidence 37999999999975 45899999999 9999999999999999999999999953 444421
Q ss_pred ------------cceeeEEcCCC--------ccchhHHHHHHhh-------------------CCCh---hhhhhhhhHH
Q 039839 76 ------------QTTKGIWIAKC--------VGIEPFTIAMDLE-------------------GSDS---RERGEDDTTF 113 (825)
Q Consensus 76 ------------q~~~G~~~~~~--------t~~enl~l~ld~~-------------------g~~~---~er~e~~~~~ 113 (825)
...+|++++.. ++.+|+...+... |... .........+
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGG 152 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHH
Confidence 12367777653 2233443221101 1110 0011112334
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
|+||++||||++ ++|||||||++||+.. ++.+.+++.++.++.|.|+|+||||++.+. .+||+++++++|
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~vsH~~~~~~-~~~d~~~~l~~G 225 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRDLGLAVIIVTHDLGVAR-LLAQRLLVMQQG 225 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEEECC
Confidence 999999999999 9999999999999999 999999999987655899999999998774 579999999999
Q ss_pred eEEEecCccccc
Q 039839 191 KIWDAVPKPQTL 202 (825)
Q Consensus 191 kI~~~g~~~e~l 202 (825)
+++..+++.++.
T Consensus 226 ~i~~~~~~~~~~ 237 (253)
T TIGR02323 226 RVVESGLTDQVL 237 (253)
T ss_pred EEEEECCHHHHh
Confidence 999988766554
No 167
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.8e-26 Score=241.30 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=139.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~----------- 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. ..|.+|+.
T Consensus 3 ~~l~i~~v~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 3 KRIDVKDLNIYYGS---FHAVEDVNLNI--EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred ccEEEeeEEEEECC---EeeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 37999999999976 46899999999 999999999999999999999999985320 00234431
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhhCC-Chhh---hh---------------------hhhhHHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLEGS-DSRE---RG---------------------EDDTTFEKQSA 118 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~g~-~~~e---r~---------------------e~~~~~ErQRv 118 (825)
+..+|++++. .++.+|+.+.....+. .... .. .....+||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 1246777664 4567777665433221 1110 00 01122399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe------C
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED------I 189 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~------~ 189 (825)
+||||++ ++|||||||++||+.. +..+.+++.++.+ ++|||+||||++.+. .+||++++++ +
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tviivsH~~~~~~-~~~d~i~~l~~~~~~~~ 228 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPIS------TLAIEDLINELKQ--DYTIVIVTHNMQQAA-RVSDQTAFFNLEATGKP 228 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHH-HhCCEEEEEecccCCCC
Confidence 9999999 9999999999999999 9999999999953 689999999998763 5899999996 7
Q ss_pred CeEEEecCcccccC
Q 039839 190 QKIWDAVPKPQTLK 203 (825)
Q Consensus 190 GkI~~~g~~~e~l~ 203 (825)
|+|+..|++.+++.
T Consensus 229 g~i~~~~~~~~~~~ 242 (258)
T PRK14241 229 GRLVEIDDTEKIFS 242 (258)
T ss_pred ceEEecCCHHHHHh
Confidence 99999988766543
No 168
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=5.7e-26 Score=238.59 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=139.6
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .+..|+. +
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEV--PTGSLVALLGPSGSGKSTLLRIIAGLE----QPDSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCChhh
Confidence 478999999976 56999999999 999999999999999999999999994 4455541 2
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---HH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~V 127 (825)
..+|++++. .++.+|+.+.....+.......+. ...+|+||++||+|++ ++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 346776544 355667765443323221111111 1223999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
+||||||+|||.+. +..+.+.+.++.++.++|+|++||+++.+. ..||+++++++|+++..|+.++...
T Consensus 152 lllDEP~~~LD~~~------~~~~~~~l~~~~~~~~~tvli~sH~~~~~~-~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKV------RKELRSWLRKLHDEVHVTTVFVTHDQEEAM-EVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999 999999999987655899999999998763 5799999999999999988666543
No 169
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.7e-26 Score=240.11 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=140.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc--CCCcc----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA--FRGRS---------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~--~~G~~---------- 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+... ..+ .+|+.
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~-~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEI--EEKSVVAFIGPSGCGKSTFLRLFNRMNDL-IPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEE--eCCCEEEEECCCCCCHHHHHHHHhhhhcc-cCCCCCceEEEECCEecccc
Confidence 47999999999976 56899999999 99999999999999999999999996210 011 23431
Q ss_pred -------cceeeEEcCCC-----ccchhHHHHHHhhCCCh-hh------------------------hhhhhhHHHHHHH
Q 039839 76 -------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS-RE------------------------RGEDDTTFEKQSA 118 (825)
Q Consensus 76 -------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~-~e------------------------r~e~~~~~ErQRv 118 (825)
+..+||+++.. ++.+|+.+.....+... .. .......+||||+
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred cccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH
Confidence 12467776653 55677765543322111 00 0011233499999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||||++ ++|||||||+|||+.. +..+.+.++++. + ++|||+||||++.+. ++||+++++++|+++..
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~-~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPIS------TAKVEELIHELK-K-DYTIVIVTHNMQQAA-RVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHH-hhCCEEEEEECCEEEEE
Confidence 9999999 9999999999999999 999999999995 4 789999999998763 58999999999999999
Q ss_pred cCcccccCC
Q 039839 196 VPKPQTLKN 204 (825)
Q Consensus 196 g~~~e~l~~ 204 (825)
|++++++.+
T Consensus 227 ~~~~~~~~~ 235 (250)
T PRK14245 227 DDTKKIFTN 235 (250)
T ss_pred CCHHHHhcC
Confidence 988776543
No 170
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.9e-26 Score=242.23 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=140.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~----------- 75 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. ..|.+|+.
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDI--PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 47999999999976 56999999999 999999999999999999999999985310 01244531
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCC--Chhh---h---------------------hhhhhHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGS--DSRE---R---------------------GEDDTTFEKQSA 118 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~--~~~e---r---------------------~e~~~~~ErQRv 118 (825)
+..+|++++.. ++.+|+.+.....+. ...+ + ......+||||+
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 13467876652 556777665432221 1000 0 011223499999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+|||||+ ++|||||||++||+.. +..+.++|+++.+ +.|||+||||++.+. ..||+++++++|++...
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~l~~--~~tiiivtH~~~~~~-~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIA------TAKVEELIDELRQ--NYTIVIVTHSMQQAA-RVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHhc--CCeEEEEEcCHHHHH-hhCCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 9999999999864 689999999998773 58999999999999999
Q ss_pred cCccccc
Q 039839 196 VPKPQTL 202 (825)
Q Consensus 196 g~~~e~l 202 (825)
|++.+++
T Consensus 244 g~~~~~~ 250 (267)
T PRK14235 244 GDTEKMF 250 (267)
T ss_pred CCHHHHH
Confidence 8766654
No 171
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.5e-26 Score=270.51 Aligned_cols=183 Identities=12% Similarity=0.134 Sum_probs=144.3
Q ss_pred ceEEEEEeEEEecCcc--------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----
Q 039839 8 CCMQLIDGNGEFNVDG--------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~--------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---- 75 (825)
++|+++|+++.|+... -..++++++|.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~lvG~nGsGKSTLlk~i~Gl~----~p~~G~I~~~g 385 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDL--WPGETLSLVGESGSGKSTTGRALLRLV----ESQGGEIIFNG 385 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCcEEEECC
Confidence 4799999999996210 135899999999 999999999999999999999999995 3444441
Q ss_pred --------------cceeeEEcCCC--------ccchhHHHHHHhhCC-Chhhhhh---------------------hhh
Q 039839 76 --------------QTTKGIWIAKC--------VGIEPFTIAMDLEGS-DSRERGE---------------------DDT 111 (825)
Q Consensus 76 --------------q~~~G~~~~~~--------t~~enl~l~ld~~g~-~~~er~e---------------------~~~ 111 (825)
+..+||++|.. ++.+++.+.+...+. ...+..+ ...
T Consensus 386 ~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 386 QRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred EECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 12478888763 346666654433332 1111101 112
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.+|||||+|||||+ +||||||||++||... +..|+++|+++.++.|.||||||||++.+. .+||+|++|+
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~------~~~i~~ll~~l~~~~g~tvi~isHdl~~v~-~~~dri~vl~ 538 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSI------RGQIINLLLDLQRDFGIAYLFISHDMAVVE-RISHRVAVMY 538 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 23999999999999 9999999999999999 999999999998766899999999998874 6899999999
Q ss_pred CCeEEEecCcccccC
Q 039839 189 IQKIWDAVPKPQTLK 203 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~ 203 (825)
+|+|++.|++.+++.
T Consensus 539 ~G~iv~~g~~~~i~~ 553 (623)
T PRK10261 539 LGQIVEIGPRRAVFE 553 (623)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999998877764
No 172
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8e-26 Score=238.99 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=139.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGR------------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~------------ 74 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+ ...+..|+
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~~sl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGN---YEALHGISLDF--EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 37999999999976 56999999999 99999999999999999999999999531 00023443
Q ss_pred -----ccceeeEEcCC-----CccchhHHHHHHhhCCChhh-------------------------hhhhhhHHHHHHHH
Q 039839 75 -----SQTTKGIWIAK-----CVGIEPFTIAMDLEGSDSRE-------------------------RGEDDTTFEKQSAL 119 (825)
Q Consensus 75 -----~q~~~G~~~~~-----~t~~enl~l~ld~~g~~~~e-------------------------r~e~~~~~ErQRv~ 119 (825)
.+..+|++++. .++.+|+.+.....+....+ .......+|+||++
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH
Confidence 12346777655 35577776554322211100 00112233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||||++ ++|||||||++||++. +..+.+.+.++.+ +.|||+||||++.+. .+||+++++++|++...|
T Consensus 158 laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiiiisH~~~~~~-~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPIS------SSEIEETLMELKH--QYTFIMVTHNLQQAG-RISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHH------HHHHHHHHHHHHc--CCeEEEEECCHHHHH-hhcCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 9999999999853 689999999998763 579999999999999988
Q ss_pred Cccccc
Q 039839 197 PKPQTL 202 (825)
Q Consensus 197 ~~~e~l 202 (825)
++.+.+
T Consensus 229 ~~~~~~ 234 (251)
T PRK14251 229 PTEEMF 234 (251)
T ss_pred CHHHHH
Confidence 766554
No 173
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=4.4e-26 Score=265.21 Aligned_cols=178 Identities=14% Similarity=0.153 Sum_probs=140.0
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|++++|+. +.+++++++.+ .+|++++|+||||||||||||+|+|+.. +.|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--~~p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTI--EEGEVLGILGRSGAGKSVLMHVLRGMDQ--YEPTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhhccc--CCCCceEEEEeccccccccccc
Confidence 578999999975 56899999999 9999999999999999999999999841 01222210
Q ss_pred ----------------------------------cceeeEEcCC-------CccchhHHHHHHhhCCChhhhhhh-----
Q 039839 76 ----------------------------------QTTKGIWIAK-------CVGIEPFTIAMDLEGSDSRERGED----- 109 (825)
Q Consensus 76 ----------------------------------q~~~G~~~~~-------~t~~enl~l~ld~~g~~~~er~e~----- 109 (825)
+..+|+++|. .++.+|+.+.....+....+..+.
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1246887774 245777777654444332221111
Q ss_pred ---------------hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEec
Q 039839 110 ---------------DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIR 171 (825)
Q Consensus 110 ---------------~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTH 171 (825)
...+|||||+||+||+ ++|||||||++||++. +..++++++++.++.|+|||+|||
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT------AKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeC
Confidence 1223999999999999 9999999999999999 999999999997655899999999
Q ss_pred CCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 172 DKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 172 Dl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
|++.+. .+||++++|++|+|+..|++.++
T Consensus 228 d~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 228 WPEVIE-DLSDKAIWLENGEIKEEGTPDEV 256 (520)
T ss_pred CHHHHH-HhcCEEEEEeCCEEeeecCHHHH
Confidence 998773 58999999999999988876554
No 174
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=3.7e-26 Score=230.68 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=125.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.| +++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 3 ~~l~~~~l~~~~-------~l~~vs~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 3 PVLEVRGLSVKG-------AVRDVSFEV--RAGEIVGIAGLVGNGQTELAEALFGLR----PPASGEITLDGKPVTRRSP 69 (182)
T ss_pred cEEEEeccEEEe-------eecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCccCH
Confidence 379999999988 688999999 999999999999999999999999994 4555531
Q ss_pred ----cceeeEEcCCC---------ccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCcc
Q 039839 76 ----QTTKGIWIAKC---------VGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGR 139 (825)
Q Consensus 76 ----q~~~G~~~~~~---------t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~ 139 (825)
+..+||+++.. ++.+|+.+... ....|+||++||+|++ ++|||||||++||+
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~ 137 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH
Confidence 12467776652 23444433211 5677999999999999 99999999999999
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 140 EQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 140 Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
+. ++.+.+++.++.++ |.|+|++|||++.+. .+||+++++++|++
T Consensus 138 ~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~~~-~~~d~v~~l~~G~i 182 (182)
T cd03215 138 GA------KAEIYRLIRELADA-GKAVLLISSELDELL-GLCDRILVMYEGRI 182 (182)
T ss_pred HH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEecCCcC
Confidence 99 99999999999765 899999999997664 47999999999874
No 175
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.6e-26 Score=241.83 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=140.4
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS---------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~---------- 75 (825)
..+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+... ...+..|+.
T Consensus 19 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 19 EHILEVKDLSIYYGE---KRAVNDISMDI--EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred CceEEEEEEEEEeCC---ceeeeceEEEE--cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 357999999999976 56899999999 99999999999999999999999997420 001334431
Q ss_pred -------cceeeEEcCCC-----ccchhHHHHHHhhCCChh----hh---------------------hhhhhHHHHHHH
Q 039839 76 -------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDSR----ER---------------------GEDDTTFEKQSA 118 (825)
Q Consensus 76 -------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~----er---------------------~e~~~~~ErQRv 118 (825)
...+||+++.. ++.+|+.+.....+.... +. ......+|+||+
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 12467876653 456676654332221100 00 011223399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||||++ ++|||||||+|||+.. +..+.++++++.+ +.|||++|||++.+. .+||++++|++|+++..
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~~~-~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPIS------NAKIEELITELKE--EYSIIIVTHNMQQAL-RVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHH------HHHHHHHHHHHhc--CCEEEEEEeCHHHHH-HhCCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 9999999999964 589999999998763 58999999999999999
Q ss_pred cCcccccC
Q 039839 196 VPKPQTLK 203 (825)
Q Consensus 196 g~~~e~l~ 203 (825)
|++++.+.
T Consensus 245 ~~~~~~~~ 252 (268)
T PRK14248 245 DQTEQIFT 252 (268)
T ss_pred CCHHHHHh
Confidence 88766544
No 176
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=4.1e-26 Score=228.58 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=124.5
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+... ..++.++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 1 i~~~~l~~~~~~~~-~~~l~~~~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGAE-PPVLRNVSFSI--EPGESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCCC-CcceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEEcccCCHHH
Confidence 47899999996421 35899999999 999999999999999999999999994 4555641
Q ss_pred -cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHH
Q 039839 76 -QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTV 151 (825)
Q Consensus 76 -q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V 151 (825)
...++++++....... .+.+. .....|+||++||+|++ ++|||||||++||+.. +..+
T Consensus 74 ~~~~i~~~~q~~~~~~~--tv~~~----------lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~------~~~l 135 (173)
T cd03246 74 LGDHVGYLPQDDELFSG--SIAEN----------ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG------ERAL 135 (173)
T ss_pred HHhheEEECCCCccccC--cHHHH----------CcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH------HHHH
Confidence 2245666665321110 11111 15677999999999999 9999999999999999 9999
Q ss_pred HHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 152 FQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 152 ~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
+++++++.++ |+|+|+||||++... .||++++|++|++
T Consensus 136 ~~~l~~~~~~-~~tii~~sh~~~~~~--~~d~v~~l~~G~i 173 (173)
T cd03246 136 NQAIAALKAA-GATRIVIAHRPETLA--SADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHhC-CCEEEEEeCCHHHHH--hCCEEEEEECCCC
Confidence 9999999765 899999999997664 7999999999874
No 177
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=8.3e-26 Score=239.72 Aligned_cols=181 Identities=13% Similarity=0.048 Sum_probs=138.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++| . ..+++++++.+ .+|++++|+||||||||||+++|+|+..+...++.|+.
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTL--QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 79999999999 3 46899999999 99999999999999999999999999543111155541
Q ss_pred cceeeEEcCCCc--------cchhHHHHHHhhCCChh---------------------hhhhhhhHHHHHHHHHHHHHH-
Q 039839 76 QTTKGIWIAKCV--------GIEPFTIAMDLEGSDSR---------------------ERGEDDTTFEKQSALFALAIA- 125 (825)
Q Consensus 76 q~~~G~~~~~~t--------~~enl~l~ld~~g~~~~---------------------er~e~~~~~ErQRv~iArALa- 125 (825)
...+||+++... +.+++.+.....+.... ........+|+||++||||++
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 134778877642 11333222211221110 011123345999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||++||+.. +..+.++++++.++.|+|||+||||++.+. .+||+++++++|+++..|++++.+
T Consensus 158 ~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~~~~~g~til~~sH~~~~~~-~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVA------QARILDLLESIVQKRALGMLLVTHDMGVVA-RLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHH-HhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999 999999999997655899999999998763 579999999999999998876654
No 178
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.4e-26 Score=242.35 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=139.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~~----------- 75 (825)
.+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+.. .|..|+.
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDI--PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 57999999999976 56899999999 9999999999999999999999999853100 0234431
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCCCh--hhhh---------------------hhhhHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS--RERG---------------------EDDTTFEKQSALFA 121 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~--~er~---------------------e~~~~~ErQRv~iA 121 (825)
+..+||+++.. ++.+|+.+.....+... .++. ......||||++||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 12477876653 55667665443222211 0100 11223399999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC---------
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI--------- 189 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~--------- 189 (825)
||++ ++|||||||++||++. +..+.+++.++.+ +.|||+||||++.+. .+||++++|++
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~------~~~l~~~l~~~~~--~~tiiivtH~~~~~~-~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPIS------TLKIEETMHELKK--NFTIVIVTHNMQQAV-RVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHH-HhcCEEEEEecccccccccc
Confidence 9999 9999999999999999 9999999999953 689999999998773 58999999996
Q ss_pred --CeEEEecCcccccC
Q 039839 190 --QKIWDAVPKPQTLK 203 (825)
Q Consensus 190 --GkI~~~g~~~e~l~ 203 (825)
|++++.|++.+++.
T Consensus 238 ~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 238 KVGYLVEFNETKKIFN 253 (269)
T ss_pred ccceEEEeCCHHHHHh
Confidence 67888888777654
No 179
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=8.6e-26 Score=233.23 Aligned_cols=170 Identities=19% Similarity=0.192 Sum_probs=131.8
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
++++|+++.|+. .+.++++.+ .+|++++|+||||||||||+++|+|+ ..+.+|+. .
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNV--ADGEIVAIMGPSGAGKSTLLNLIAGF----IEPASGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEE--eCCcEEEEECCCCCCHHHHHHHHhcC----CCCCCcEEEECCEEcccCChhc
Confidence 468999999963 346899999 99999999999999999999999999 44555641 2
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCC-Chh--hhhh-h----------------hhHHHHHHHHHHHHHH---HH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGS-DSR--ERGE-D----------------DTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~-~~~--er~e-~----------------~~~~ErQRv~iArALa---~V 127 (825)
..+|++++. .++.+|+.+....... ... .+.. . ....|+||++||+|++ ++
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 346777665 3556777654321110 100 1111 0 1123999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|||||||++||.+. +..+++++.++.++.|+|||+||||++... ++||++++|++|+++..|.
T Consensus 150 lllDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tii~vsh~~~~~~-~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLL------REEMLALVKQLCSERQRTLLMVTHHLSDAR-AIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hhcCeEEEEECCeEEEecC
Confidence 99999999999999 999999999997655899999999998763 5899999999999988763
No 180
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.7e-26 Score=236.71 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=138.8
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
|.++|++++|+. +.+++++++.+ .+|++++|+||||||||||+++|+|+. .+..|+. .
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~g~~----~~~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDI--KEGEFFTLLGPSGCGKTTLLRLIAGFE----TPTSGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCChhh
Confidence 468999999976 56999999999 999999999999999999999999994 4555531 2
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCCChhhhh--------------------hhhhHHHHHHHHHHHHHH---HH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG--------------------EDDTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~--------------------e~~~~~ErQRv~iArALa---~V 127 (825)
..+|++++. .++.+|+.+.....+.+..... ......|+||++||||++ ++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 346776554 3456666655443332211100 111223999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
|||||||+|||... ++.+.+++.++.++.|.|||++|||++.+. ++||+++++++|++...|+..+..
T Consensus 152 lllDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sh~~~~~~-~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 152 LLLDEPLGALDLKL------RKDMQLELKRLQKELGITFVFVTHDQEEAL-TMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999 999999999997655899999999998763 589999999999999888755443
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.6e-26 Score=238.25 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=139.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~------------- 74 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. -.+.+|+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDI--EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 5899999999976 46899999999 999999999999999999999999974310 0012343
Q ss_pred ----ccceeeEEcCCC-----ccchhHHHHHHhhCCC-hhhhh------------------------hhhhHHHHHHHHH
Q 039839 75 ----SQTTKGIWIAKC-----VGIEPFTIAMDLEGSD-SRERG------------------------EDDTTFEKQSALF 120 (825)
Q Consensus 75 ----~q~~~G~~~~~~-----t~~enl~l~ld~~g~~-~~er~------------------------e~~~~~ErQRv~i 120 (825)
.+..+|++++.. ++.+|+.+.....+.. ..+.. ......|+||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 123467776653 4567776654333321 11000 0122339999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|||++ ++|||||||++||+.. +..+.+.++++. + +.|||+||||++.+. ..||+++++++|+++..++
T Consensus 158 aral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPIS------TLKIEELIQELK-K-DYTIVIVTHNMQQAS-RISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEeCHHHHH-hhCCEEEEEECCEEEEeCC
Confidence 99999 9999999999999999 999999999985 3 789999999998763 5799999999999999987
Q ss_pred cccccC
Q 039839 198 KPQTLK 203 (825)
Q Consensus 198 ~~e~l~ 203 (825)
+.+.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK14240 229 TVDLFT 234 (250)
T ss_pred HHHHHh
Confidence 766543
No 182
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=7.4e-26 Score=237.70 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=123.5
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------cceeeEEcCC-----
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------------QTTKGIWIAK----- 85 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------------q~~~G~~~~~----- 85 (825)
+.+++++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+. +..+||++++
T Consensus 34 ~~il~~vs~~i--~~Ge~~~i~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 34 VEALKGISFTI--EKGEIVGFIGPNGAGKTTTLKILSGLL----QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred eeeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 35899999999 999999999999999999999999994 4555541 1346777632
Q ss_pred --CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---HHheecCCCCCCccc
Q 039839 86 --CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA---DIVLINMWCHDIGRE 140 (825)
Q Consensus 86 --~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~E 140 (825)
.++.+++.+.....+....+..+ .....|+||++||+|++ ++|||||||++||++
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 23455665544333332211111 11223999999999999 999999999999999
Q ss_pred cccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 141 QAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 141 pta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
. ++.+.++|.++.++.+.|||+||||++.+. ..||+++++++|+++..|
T Consensus 188 ~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~-~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 A------QENIRNFLKEYNRERGTTVLLTSHYMKDIE-ALARRVLVIDKGRLLYDG 236 (236)
T ss_pred H------HHHHHHHHHHHHhcCCCEEEEEecCHHHHH-HhCCEEEEEeCCEEEecC
Confidence 9 999999999997655899999999998763 579999999999997653
No 183
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.7e-26 Score=258.08 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=143.6
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.+.++++|++|+|++ ..+|++++|.+ .+|||+||+|.||||||||+|+|+|. +.|++|+.
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v--~~GEV~aL~GeNGAGKSTLmKiLsGv----~~p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDGVSLTV--RPGEVHALLGENGAGKSTLMKILSGV----YPPDSGEILIDGKPVAFSS 76 (500)
T ss_pred cceeeeecceEEcCC---ceeeccceeEE--eCceEEEEecCCCCCHHHHHHHHhCc----ccCCCceEEECCEEccCCC
Confidence 347999999999988 68999999999 99999999999999999999999999 56777761
Q ss_pred -----cceeeEE------cCCCccchhHHHHHHhhC----CChhhhhhhh--------------------hHHHHHHHHH
Q 039839 76 -----QTTKGIW------IAKCVGIEPFTIAMDLEG----SDSRERGEDD--------------------TTFEKQSALF 120 (825)
Q Consensus 76 -----q~~~G~~------~~~~t~~enl~l~ld~~g----~~~~er~e~~--------------------~~~ErQRv~i 120 (825)
..-++++ ++++++.+|+.+.-.... .+.+...+.+ .-.|||.|.|
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 1123344 455677888876544322 1222211111 1129999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|||++ +||||||||+.|+... ...+++++++|.++ |.++|||||.++++ ++.|||+.+|.+|+++...+
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E------~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei-~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKE------TERLFDLIRRLKAQ-GVAIIYISHRLDEV-FEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCcHHHH-HHhcCEEEEEeCCEEeeecc
Confidence 99999 8999999999999999 99999999999976 99999999999877 46999999999999999887
Q ss_pred c-ccc
Q 039839 198 K-PQT 201 (825)
Q Consensus 198 ~-~e~ 201 (825)
. .+.
T Consensus 229 ~~~~~ 233 (500)
T COG1129 229 TAAET 233 (500)
T ss_pred cccCC
Confidence 3 443
No 184
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=5e-26 Score=244.36 Aligned_cols=192 Identities=15% Similarity=0.102 Sum_probs=141.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc----CCCcc---------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA----FRGRS--------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~----~~G~~--------- 75 (825)
||+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+..+..++ ..|+.
T Consensus 1 ml~~~nl~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 1 MLTADHLHVARRH---RAILRDLSLRI--EPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred CeEEEEEEEEECC---EeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 4899999999976 56899999999 999999999999999999999999995322000 04431
Q ss_pred ------cceeeEEcCCC------ccchhHHHHHHhh----CCChhhhhhh--------------------hhHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC------VGIEPFTIAMDLE----GSDSRERGED--------------------DTTFEKQSAL 119 (825)
Q Consensus 76 ------q~~~G~~~~~~------t~~enl~l~ld~~----g~~~~er~e~--------------------~~~~ErQRv~ 119 (825)
...++++++.. ++.+|+.+..... +....+..+. ...+|+||++
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ 155 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 12356766542 4566665532111 1000110011 1223999999
Q ss_pred HHHHHH------------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 120 FALAIA------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 120 iArALa------------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
||+|++ ++|||||||++||+.. +..+.+++.++.++.|+|||+||||++.+. .+||+++++
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tviiisH~~~~~~-~~~d~i~~l 228 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH------QHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAML 228 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEEEEE
Confidence 999995 7999999999999999 999999999997655899999999997763 579999999
Q ss_pred eCCeEEEecCcccccCCcccccccc
Q 039839 188 DIQKIWDAVPKPQTLKNTPLSEFFN 212 (825)
Q Consensus 188 ~~GkI~~~g~~~e~l~~~~l~d~f~ 212 (825)
++|+|+..|+++++.....+..+|+
T Consensus 229 ~~G~i~~~g~~~~~~~~~~~~~~~~ 253 (272)
T PRK13547 229 ADGAIVAHGAPADVLTPAHIARCYG 253 (272)
T ss_pred ECCeEEEecCHHHHcCHHHHHHHhC
Confidence 9999999998776654433444444
No 185
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.3e-26 Score=242.69 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=138.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|++. +.+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+.
T Consensus 5 ~~l~~~~l~~~~~~~--~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 5 AGIVVNDVTVTWRNG--HTALRDASFTV--PGGSIAALVGVNGSGKSTLFKALMGF----VRLASGKISILGQPTRQALQ 76 (272)
T ss_pred ceEEEEeEEEEecCC--cEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEECCEEhHHhhc
Confidence 369999999999532 56899999999 99999999999999999999999999 45555641
Q ss_pred cceeeEEcCCCc--------cchhHHHHH-H---hhCCChh---hhhh-----------------hhhHHHHHHHHHHHH
Q 039839 76 QTTKGIWIAKCV--------GIEPFTIAM-D---LEGSDSR---ERGE-----------------DDTTFEKQSALFALA 123 (825)
Q Consensus 76 q~~~G~~~~~~t--------~~enl~l~l-d---~~g~~~~---er~e-----------------~~~~~ErQRv~iArA 123 (825)
...+||+++... +.+++.+.. . ..+.... ++.. ....+|+||++||+|
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lara 156 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARA 156 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 124788876532 122322110 0 0000100 0100 112239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. +..+.++|.++.++ |+|||+||||++.+. ..||+++++ +|++...|++.+
T Consensus 157 L~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-g~tviivsH~~~~~~-~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 157 IAQQGQVILLDEPFTGVDVKT------EARIISLLRELRDE-GKTMLVSTHNLGSVT-EFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEE-CCEEEeecCHHh
Confidence 99 9999999999999999 99999999999765 899999999997763 589999877 799999998776
Q ss_pred ccCCccccccc
Q 039839 201 TLKNTPLSEFF 211 (825)
Q Consensus 201 ~l~~~~l~d~f 211 (825)
++....+.+.|
T Consensus 228 ~~~~~~~~~~~ 238 (272)
T PRK15056 228 TFTAENLELAF 238 (272)
T ss_pred ccCHHHHHHHh
Confidence 65433333333
No 186
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-25 Score=237.89 Aligned_cols=180 Identities=15% Similarity=0.126 Sum_probs=139.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~------------- 74 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+.. .+.+|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPI--PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEe--cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 6999999999975 56999999999 9999999999999999999999999854210 012342
Q ss_pred ---ccceeeEEcCCC-----ccchhHHHHHHhhCCCh-hhh------------------------hhhhhHHHHHHHHHH
Q 039839 75 ---SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDS-RER------------------------GEDDTTFEKQSALFA 121 (825)
Q Consensus 75 ---~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~-~er------------------------~e~~~~~ErQRv~iA 121 (825)
.+..+||+++.. ++.+|+.+.....+... ... ......+|+||++||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred hHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 123467776653 45667765433222211 000 001123499999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||++ +||||||||+|||+.. +..+.+++.++.+ +.|||+||||++.+. .+||+++++++|+|...|++
T Consensus 158 ral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIA------THKIEELMEELKK--NYTIVIVTHSMQQAR-RISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEecCHHHHH-HhCCEEEEEECCEEEEeCCH
Confidence 9999 9999999999999999 9999999999965 589999999998764 57999999999999998876
Q ss_pred cccc
Q 039839 199 PQTL 202 (825)
Q Consensus 199 ~e~l 202 (825)
++..
T Consensus 229 ~~~~ 232 (249)
T PRK14253 229 QVIF 232 (249)
T ss_pred HHHH
Confidence 6543
No 187
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=6.9e-26 Score=261.70 Aligned_cols=178 Identities=15% Similarity=0.130 Sum_probs=136.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|..
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~liG~nGsGKSTLl~~l~G~~----~p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTL--NAGDSWAFVGANGSGKSALARALAGEL----PLLSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCCceEEECCcccccCCHH
Confidence 6999999999976 45999999999 999999999999999999999999994 4444541
Q ss_pred --cceeeEEcCCCc--------------cchhHHH----------HHHhhCCCh--hhhhhhhhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAKCV--------------GIEPFTI----------AMDLEGSDS--RERGEDDTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~~t--------------~~enl~l----------~ld~~g~~~--~er~e~~~~~ErQRv~iArALa-- 125 (825)
...+|++++... +.+++.+ .++..|... .........+|||||+||+||+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 122566665421 1222110 011112211 0011123344999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++|||||||++||++. +..+.+++.++.++ |.|||+||||++.+. ..||++++|++|+++..|++++.+.
T Consensus 154 p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tvii~tH~~~~~~-~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 154 PDLLILDEPFDGLDVAS------RQQLAELLASLHQS-GITLVLVLNRFDEIP-DFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHH-hhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999 99999999999875 899999999998774 5899999999999999987766544
No 188
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=236.83 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=139.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC-cCCCc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD-AFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~-~~~G~------------- 74 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+|+|+|+..+... ..+|+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDV--QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 7999999999975 56999999999 99999999999999999999999998532100 01332
Q ss_pred ----ccceeeEEcCC------CccchhHHHHHHhhCCChhh----hh---------------------hhhhHHHHHHHH
Q 039839 75 ----SQTTKGIWIAK------CVGIEPFTIAMDLEGSDSRE----RG---------------------EDDTTFEKQSAL 119 (825)
Q Consensus 75 ----~q~~~G~~~~~------~t~~enl~l~ld~~g~~~~e----r~---------------------e~~~~~ErQRv~ 119 (825)
.+..+||+++. .++.+|+.+.....+....+ +. .....+|+||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 01246777665 35567776544322211110 00 011223999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+|++ +||||||||++||+.. +..+.+.++++. + ++|+|++|||++.+. ..||++++|++|++...|
T Consensus 159 laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPAS------TARIEDLMTDLK-K-VTTIIIVTHNMHQAA-RVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 999999999986 3 699999999998764 579999999999999998
Q ss_pred CcccccC
Q 039839 197 PKPQTLK 203 (825)
Q Consensus 197 ~~~e~l~ 203 (825)
++++.+.
T Consensus 230 ~~~~~~~ 236 (252)
T PRK14272 230 PTDQLFT 236 (252)
T ss_pred CHHHHHh
Confidence 8776543
No 189
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.93 E-value=1.3e-25 Score=240.30 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=138.7
Q ss_pred eEEEEEeEEEecCc------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------
Q 039839 9 CMQLIDGNGEFNVD------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------- 75 (825)
+|+++|+++.|+.. .-+.+++++++.+ .+|++++|+||||||||||+++|+|+. .+.+|+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSL--KSGETVALLGRSGCGKSTLARLLVGLE----SPSQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEec
Confidence 69999999999630 0156899999999 999999999999999999999999994 4555541
Q ss_pred -----------cceeeEEcCCC--------ccchhHHHHHHh-hCCChhh---------------------hhhhhhHHH
Q 039839 76 -----------QTTKGIWIAKC--------VGIEPFTIAMDL-EGSDSRE---------------------RGEDDTTFE 114 (825)
Q Consensus 76 -----------q~~~G~~~~~~--------t~~enl~l~ld~-~g~~~~e---------------------r~e~~~~~E 114 (825)
+..+|++++.. ++.+++.+.... .+....+ .......+|
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 13477777653 223444332211 1111110 011123349
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
+||++||+||+ +||||||||++||.+. +..+.+.+.++.++.++|+|+||||++.+. .+||+++++++|+
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiiivsH~~~~i~-~~~d~i~~l~~G~ 229 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVL------QAGVIRLLKKLQQQFGTACLFITHDLRLVE-RFCQRVMVMDNGQ 229 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHHcCcEEEEEECCHHHHH-HhCCEEEEEECCE
Confidence 99999999999 9999999999999999 999999999997655899999999998774 5799999999999
Q ss_pred EEEecCccccc
Q 039839 192 IWDAVPKPQTL 202 (825)
Q Consensus 192 I~~~g~~~e~l 202 (825)
+...|++++..
T Consensus 230 i~~~g~~~~~~ 240 (268)
T PRK10419 230 IVETQPVGDKL 240 (268)
T ss_pred EeeeCChhhcc
Confidence 99999876654
No 190
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=8.6e-26 Score=226.25 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=125.1
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
++++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTV--EKGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccchHhh
Confidence 468999999975 46899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHH
Q 039839 76 QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVF 152 (825)
Q Consensus 76 q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~ 152 (825)
+..+|++++......... +.+.. .....|+||++||+|++ ++|||||||++||... +..+.
T Consensus 72 ~~~i~~~~q~~~~~~~~t-v~~~~---------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~~l~ 135 (173)
T cd03230 72 KRRIGYLPEEPSLYENLT-VRENL---------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES------RREFW 135 (173)
T ss_pred hccEEEEecCCccccCCc-HHHHh---------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH------HHHHH
Confidence 124566666532111100 00000 05677999999999999 9999999999999999 99999
Q ss_pred HHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 153 QVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 153 elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
+++.++.++ |.|+|++|||++.+. ..||+++++++|++
T Consensus 136 ~~l~~~~~~-g~tiii~th~~~~~~-~~~d~i~~l~~g~i 173 (173)
T cd03230 136 ELLRELKKE-GKTILLSSHILEEAE-RLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHC-CCEEEEECCCHHHHH-HhCCEEEEEeCCCC
Confidence 999999876 899999999998764 57999999999874
No 191
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.93 E-value=1.3e-25 Score=225.91 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=128.3
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..+.+|+.
T Consensus 1 i~~~~~~~~~~~~~-~~~l~~i~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQE-QQVLKNLSLEL--KQGEKIALLGRSGSGKSTLLQLLTGD----LKPQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCCC-ccceEEEEEEE--cCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCCEEEECCEEHHHHHHHH
Confidence 47899999996521 25899999999 99999999999999999999999999 45556641
Q ss_pred cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHH
Q 039839 76 QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVF 152 (825)
Q Consensus 76 q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~ 152 (825)
+..+||+++...... . .+.+.. .......|+||++||||++ ++|||||||++||... ++.++
T Consensus 74 ~~~i~~~~q~~~~~~-~-tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~------~~~l~ 138 (178)
T cd03247 74 SSLISVLNQRPYLFD-T-TLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT------ERQLL 138 (178)
T ss_pred HhhEEEEccCCeeec-c-cHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHH
Confidence 234567666542211 0 111110 2345667999999999999 9999999999999999 99999
Q ss_pred HHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 153 QVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 153 elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
+.+.++. + +.|+|++|||++... .||+++++++|++...|
T Consensus 139 ~~l~~~~-~-~~tii~~sh~~~~~~--~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 139 SLIFEVL-K-DKTLIWITHHLTGIE--HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHc-C-CCEEEEEecCHHHHH--hCCEEEEEECCEEEecC
Confidence 9999985 4 899999999998775 69999999999997643
No 192
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.93 E-value=2e-25 Score=227.85 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=132.8
Q ss_pred eEEEEEeEEEecCc---cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------
Q 039839 9 CMQLIDGNGEFNVD---GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~---~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------- 75 (825)
.|+++|+++.|+.. ....+++++++.+ .+|++++|+||||||||||+++|+|+.. ..+..|+.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i--~~Ge~~~l~G~nGsGKStLl~~i~Gl~~--~~~~~G~i~~~g~~~~~~ 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKA--KPGELTAIMGPSGAGKSTLLNALAGRRT--GLGVSGEVLINGRPLDKR 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCceEEEECCEeCchH
Confidence 48999999999641 0146899999999 9999999999999999999999999941 04556641
Q ss_pred --cceeeEEcCCC------ccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccC
Q 039839 76 --QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAAN 144 (825)
Q Consensus 76 --q~~~G~~~~~~------t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~ 144 (825)
...++++++.. ++.+|+.+.... ......|+||++||||++ ++|||||||++||...
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~--- 146 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS--- 146 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH---
Confidence 23466765543 344555443211 045777999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEecCCC-CccccccCcEEEEeCCeEEEe
Q 039839 145 KPLLKTVFQVMMRLFSPRKTTLLFVIRDKT-KTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 145 ~~~~~~V~elL~~L~~~~g~TIL~VTHDl~-~a~l~~~drvlvl~~GkI~~~ 195 (825)
++.+.+++.++.++ |+|+|++|||++ ... ..||+++++++|++...
T Consensus 147 ---~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~-~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 147 ---ALQVMSLLRRLADT-GRTIICSIHQPSSEIF-ELFDKLLLLSQGRVIYF 193 (194)
T ss_pred ---HHHHHHHHHHHHhC-CCEEEEEecCchHHHH-HhcCEEEEEeCCEEEec
Confidence 99999999999765 899999999996 453 47999999999998754
No 193
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=236.33 Aligned_cols=180 Identities=14% Similarity=0.195 Sum_probs=138.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~------------- 74 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+.. .+.+|+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKI--FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEee--cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 6999999999975 56899999999 9999999999999999999999999853100 013443
Q ss_pred ----ccceeeEEcCC-----CccchhHHHHHHhhCCChh-hh------------------------hhhhhHHHHHHHHH
Q 039839 75 ----SQTTKGIWIAK-----CVGIEPFTIAMDLEGSDSR-ER------------------------GEDDTTFEKQSALF 120 (825)
Q Consensus 75 ----~q~~~G~~~~~-----~t~~enl~l~ld~~g~~~~-er------------------------~e~~~~~ErQRv~i 120 (825)
....+|++++. .++.+|+.+.....+.... .. .......|+||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred hHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 02346777665 3456777665433222110 00 00112239999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|+|++ ++|||||||++||+.. +..+.+.+.++.+ ++|+|+||||++.+. .+||+++++++|++...|+
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tili~sH~~~~~~-~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIA------TQRIEKLLEELSE--NYTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHH------HHHHHHHHHHHhc--CcEEEEEeCCHHHHH-HhCCEEEEEECCEEEEecC
Confidence 99999 9999999999999999 9999999999864 689999999998663 5899999999999999988
Q ss_pred ccccc
Q 039839 198 KPQTL 202 (825)
Q Consensus 198 ~~e~l 202 (825)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 66554
No 194
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=4.9e-26 Score=237.34 Aligned_cols=170 Identities=19% Similarity=0.168 Sum_probs=133.3
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc------c--eeeE
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ------T--TKGI 81 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q------~--~~G~ 81 (825)
+.+.++++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+ ..|.+|+.. . ..++
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~p~~G~i~~~g~~~~~~~~~~ 93 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEV--PRGERIGLIGRNGAGKSTLLRLLAGI----YPPDSGTVTVRGRVSSLLGLGG 93 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEECCEEchhhcccc
Confidence 678888888877 67999999999 99999999999999999999999999 456667521 0 1111
Q ss_pred -EcCCCccchhHHHHHHhhCCChhhhh--------------------hhhhHHHHHHHHHHHHHH---HHheecCCCCCC
Q 039839 82 -WIAKCVGIEPFTIAMDLEGSDSRERG--------------------EDDTTFEKQSALFALAIA---DIVLINMWCHDI 137 (825)
Q Consensus 82 -~~~~~t~~enl~l~ld~~g~~~~er~--------------------e~~~~~ErQRv~iArALa---~VLLLDEPtsgL 137 (825)
+.+..++.+|+.+.....+....+.. ......||||++||||++ ++|||||||++|
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 23345777887765443332211111 011223999999999999 999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 138 D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|++. ++.+.+.+.++.++ |+|||+||||++.+. .+||+++++++|+++..|
T Consensus 174 D~~~------~~~~~~~l~~~~~~-~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 174 DAAF------QEKCQRRLRELLKQ-GKTVILVSHDPSSIK-RLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEecC
Confidence 9999 99999999999876 899999999998763 579999999999997654
No 195
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-25 Score=236.30 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=138.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~~----------- 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+.- .+..|+.
T Consensus 5 ~~i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 5 IILSTKNLNLWYGE---KHALYDITISI--PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ceEEEeeeEEEECC---eeeeeeeEEEE--CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 47999999999976 56999999999 9999999999999999999999999842100 0123430
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCCCh-hh---hh---------------------hhhhHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS-RE---RG---------------------EDDTTFEKQSAL 119 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~-~e---r~---------------------e~~~~~ErQRv~ 119 (825)
...+|++++.. ++.+|+.+.....+... .+ .. .....+|+||++
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred cchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 12367776653 44667666543322111 00 00 011233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||||++ ++|||||||+|||++. +..+.+++.++.+ ++|+|++|||++.+. +.||+++++++|+++..|
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~--~~tvii~sh~~~~~~-~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIA------TAKIEDLIEDLKK--EYTVIIVTHNMQQAA-RVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhh--CceEEEEEcCHHHHH-hhCCEEEEEECCEEEEcC
Confidence 999999 9999999999999999 9999999999964 589999999997773 589999999999999998
Q ss_pred Cccccc
Q 039839 197 PKPQTL 202 (825)
Q Consensus 197 ~~~e~l 202 (825)
++.++.
T Consensus 231 ~~~~~~ 236 (253)
T PRK14261 231 KTTQIF 236 (253)
T ss_pred CHHHHH
Confidence 876654
No 196
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=1.1e-25 Score=262.33 Aligned_cols=186 Identities=11% Similarity=0.107 Sum_probs=140.6
Q ss_pred ceEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc----------
Q 039839 8 CCMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS---------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~---------- 75 (825)
+||+++|+++.|+.. ....+++++++.+ .+|++++|+||||||||||||+|+|+..+. ..+.+|+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i--~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQI--EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEE--eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 379999999999631 1146899999999 999999999999999999999999995421 00134431
Q ss_pred ---------cceeeEEcCCCc--------cchhHHHHHHh-hCCChhhh-----------------------hhhhhHHH
Q 039839 76 ---------QTTKGIWIAKCV--------GIEPFTIAMDL-EGSDSRER-----------------------GEDDTTFE 114 (825)
Q Consensus 76 ---------q~~~G~~~~~~t--------~~enl~l~ld~-~g~~~~er-----------------------~e~~~~~E 114 (825)
+..+|+++|... +.+++.+.... .+.+..+. ......+|
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 125789888642 23344332221 12221111 11123349
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
||||+||+||+ ++|||||||++||+.. +..++++++++.++.|+|||+||||++.+. .+||+|++|++|+
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~dri~~l~~G~ 234 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSV------QAQILQLLRELQQELNMGLLFITHNLSIVR-KLADRVAVMQNGR 234 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHHHHHhcCCeEEEEcCcHHHHH-HhcCEEEEEECCE
Confidence 99999999999 9999999999999999 999999999997655899999999998774 5899999999999
Q ss_pred EEEecCccccc
Q 039839 192 IWDAVPKPQTL 202 (825)
Q Consensus 192 I~~~g~~~e~l 202 (825)
++..|++.+++
T Consensus 235 i~~~g~~~~~~ 245 (529)
T PRK15134 235 CVEQNRAATLF 245 (529)
T ss_pred EEEeCCHHHHh
Confidence 99998776554
No 197
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-25 Score=234.90 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=138.1
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------c
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------Q 76 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q 76 (825)
|+++|+++.|+. . +++++++.+ .+|++++|+||||||||||+++|+|+ ..|..|.. .
T Consensus 1 l~~~~l~~~~~~---~-~l~~is~~i--~~Ge~~~i~G~nG~GKStLl~~l~G~----~~p~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE---F-KLKNVSLEV--ERGDYFVILGPTGSGKSVLLETIAGF----IKPDSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC---c-eeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCC----cCCCceEEEECCEEcCcCChhH
Confidence 468999999975 3 799999999 99999999999999999999999999 45555641 1
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---HH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~V 127 (825)
..+|++++. .++.+|+.+.....+....+..+. ....|+||++||+|++ ++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 246777554 345667665443322221111111 1223999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
|||||||+|||+.. +..+.+.++++..+.|+|+|++|||+..+. ..||+++++++|+++..|++.+..
T Consensus 151 lllDEPt~gLD~~~------~~~l~~~l~~~~~~~~~tili~tH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 151 LLLDEPFSALDVRT------KEKLREELKKIRKEFGVTVLHVTHDFEEAW-ALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EEECCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999 999999999997655899999999998764 579999999999999988765543
No 198
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.1e-26 Score=237.11 Aligned_cols=176 Identities=20% Similarity=0.221 Sum_probs=135.4
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+... ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 i~~~~l~~~~~~~~-~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGDG-PPVLRDISLDI--PAGETVALVGPSGSGKSTLVNLIPRFY----DVDSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCCC-ccceeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----cCCCCEEEECCEEhhhCCHHH
Confidence 47899999996521 26899999999 999999999999999999999999994 4555641
Q ss_pred -cceeeEEcCCC-----ccchhHHHHHHhh------------CCCh-------------hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAMDLE------------GSDS-------------RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~ld~~------------g~~~-------------~er~e~~~~~ErQRv~iArAL 124 (825)
+..+|++++.. ++.+|+.+..... +... .........+|+||++||+|+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 13467776553 4455554421100 0000 000112334599999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. +..+.+.++++. + +.|||+||||++.+. .||+++++++|++...++++++
T Consensus 154 ~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~--~~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 154 LKDPPILILDEATSALDTES------ERLVQAALERLM-K-NRTTFVIAHRLSTIE--NADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred hcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHh--hCCEEEEecCCeEeeeCCHHHH
Confidence 9 9999999999999999 999999999996 4 799999999998775 4999999999999988876554
Q ss_pred c
Q 039839 202 L 202 (825)
Q Consensus 202 l 202 (825)
.
T Consensus 224 ~ 224 (234)
T cd03251 224 L 224 (234)
T ss_pred H
Confidence 3
No 199
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=9e-26 Score=219.26 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=145.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
.|+++++++.||. ...+.+|++.- ..|+.+.++||+|+|||||+|.|.-+.. |.+|.
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~--~~getlvllgpsgagkssllr~lnlle~----p~sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDC--PEGETLVLLGPSGAGKSSLLRVLNLLEM----PRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred ceEEccccccccc---chheeeeeecC--CCCCEEEEECCCCCchHHHHHHHHHHhC----CCCCeEEecccccccccCc
Confidence 5999999999988 67899999998 9999999999999999999999977642 23333
Q ss_pred -------ccceeeEEcCC------CccchhHHH-HHHhhCCChhhhhhhhhHH--------------------HHHHHHH
Q 039839 75 -------SQTTKGIWIAK------CVGIEPFTI-AMDLEGSDSRERGEDDTTF--------------------EKQSALF 120 (825)
Q Consensus 75 -------~q~~~G~~~~~------~t~~enl~l-~ld~~g~~~~er~e~~~~~--------------------ErQRv~i 120 (825)
.++.+|++||+ +++.+|+.- ++.+.|.+..+...++.++ |+|||+|
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 13567888765 455666654 5677787765544333222 9999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
||||+ +||++||||.+||||- ...|.+++++|... |+|-++|||..+.+. ..+.+|+.|++|+|++.|+
T Consensus 153 aralmmkpqvllfdeptaaldpei------taqvv~iikel~~t-gitqvivthev~va~-k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIKELAET-GITQVIVTHEVEVAR-KTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHH------HHHHHHHHHHHHhc-CceEEEEEeehhHHH-hhhhheEeeecCeeEeecc
Confidence 99999 9999999999999999 88999999999876 999999999999985 6799999999999999997
Q ss_pred cc
Q 039839 198 KP 199 (825)
Q Consensus 198 ~~ 199 (825)
..
T Consensus 225 a~ 226 (242)
T COG4161 225 AS 226 (242)
T ss_pred hh
Confidence 44
No 200
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=239.12 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=141.1
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS---------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~---------- 75 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+|+|||||||||++|+|+... ...+.+|+.
T Consensus 22 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYGE---DHALKNINLDI--HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred ceEEEEeeeEEEECC---cceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 357999999999976 46899999999 99999999999999999999999998530 000344431
Q ss_pred -------cceeeEEcCCC-----ccchhHHHHHHhhCCChh----hh-h--------------------hhhhHHHHHHH
Q 039839 76 -------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDSR----ER-G--------------------EDDTTFEKQSA 118 (825)
Q Consensus 76 -------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~----er-~--------------------e~~~~~ErQRv 118 (825)
+..+||+++.. ++.+|+.+.....+.... .. . .....+||||+
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred cccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 23477877663 456777665432222110 00 0 00122399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+||+ ++|||||||++||+.. +..+.++|.++.+ +.|+|+||||++.+. .+||+++++++|+++..
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~i~-~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPIS------TLKVEELVQELKK--DYSIIIVTHNMQQAA-RISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHc--CCEEEEEEcCHHHHH-HhCCEEEEEECCEEEEe
Confidence 9999999 9999999999999999 9999999999964 689999999998763 58999999999999999
Q ss_pred cCcccccC
Q 039839 196 VPKPQTLK 203 (825)
Q Consensus 196 g~~~e~l~ 203 (825)
|++.+.+.
T Consensus 248 g~~~~~~~ 255 (271)
T PRK14238 248 DDTDKIFS 255 (271)
T ss_pred CCHHHHHc
Confidence 88766543
No 201
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=1.3e-25 Score=249.52 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=135.8
Q ss_pred EeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------------
Q 039839 14 DGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------------ 75 (825)
Q Consensus 14 nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------------ 75 (825)
|++++|+. ..+ ++++.+ .+|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 4 ~l~~~~~~---~~~--~isl~i--~~Gei~~l~G~nGsGKSTLl~~iaGl~----~p~~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGD---FSL--DADFTL--PGQGVTAIFGRSGSGKTTLIRLIAGLT----RPDEGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECC---EEE--EEEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECccCccccccch
Confidence 88999976 333 899999 999999999999999999999999994 4444431
Q ss_pred -cceeeEEcCC------CccchhHHHHHHhhCCCh-hhhh-----------------hhhhHHHHHHHHHHHHHH---HH
Q 039839 76 -QTTKGIWIAK------CVGIEPFTIAMDLEGSDS-RERG-----------------EDDTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 76 -q~~~G~~~~~------~t~~enl~l~ld~~g~~~-~er~-----------------e~~~~~ErQRv~iArALa---~V 127 (825)
+..+|+++|. .++.+|+.+......... .++. .....+||||++|||||+ ++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 2346777654 466778776543211100 0000 111233999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCc
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNT 205 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~ 205 (825)
|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+. .+||++++|++|+++..|++.+++...
T Consensus 153 llLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiiivtH~~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 153 LLMDEPLAALDDPR------KYEILPYLERLHAEFGIPILYVSHSLQEVL-RLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEcCCCcCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999 999999999998766899999999998763 579999999999999999887766543
No 202
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.4e-25 Score=238.65 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=140.8
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGR----------- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~----------- 74 (825)
..+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+. ..+.+|+
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRI--PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 457999999999975 46899999999 999999999999999999999999995310 0023453
Q ss_pred ------ccceeeEEcCCC-----ccchhHHHHHHhhCCCh-h---hh---------------------hhhhhHHHHHHH
Q 039839 75 ------SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDS-R---ER---------------------GEDDTTFEKQSA 118 (825)
Q Consensus 75 ------~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~-~---er---------------------~e~~~~~ErQRv 118 (825)
.+..+||+++.. ++.+|+.+.....+... . +. .......|+||+
T Consensus 98 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 98 KVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred ccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 123467776543 45677765443333211 0 00 011123399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||||++ ++|||||||+|||+.. +..+.+++.++.+ +.|+|+||||++.+. ..||+++++++|+|...
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~~~-~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPIS------TLKIEELITELKS--KYTIVIVTHNMQQAA-RVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEeCCHHHHH-hhCCEEEEEECCEEEec
Confidence 9999999 9999999999999999 9999999999964 689999999998763 58999999999999999
Q ss_pred cCcccccC
Q 039839 196 VPKPQTLK 203 (825)
Q Consensus 196 g~~~e~l~ 203 (825)
|++.+...
T Consensus 249 g~~~~~~~ 256 (272)
T PRK14236 249 GDTDTLFT 256 (272)
T ss_pred CCHHHHhc
Confidence 88766543
No 203
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=3.3e-25 Score=229.35 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=130.4
Q ss_pred CcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------
Q 039839 6 ECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------- 75 (825)
Q Consensus 6 ~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------- 75 (825)
...+|+++|++++|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+ ..+.+|+.
T Consensus 8 ~~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~----~~~~~G~i~~~g~~i~~~ 78 (214)
T PRK13543 8 APPLLAAHALAFSRNE---EPVFGPLDFHV--DAGEALLVQGDNGAGKTTLLRVLAGL----LHVESGQIQIDGKTATRG 78 (214)
T ss_pred CcceEEEeeEEEecCC---ceeeecceEEE--CCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCCeeEEECCEEccch
Confidence 3468999999999976 46899999999 99999999999999999999999999 45555641
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhh-----------------hhhhHHHHHHHHHHHHHH---HH
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG-----------------EDDTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~-----------------e~~~~~ErQRv~iArALa---~V 127 (825)
+..+|++++. .++.+|+.+.....+....+.. .....+||||++||++++ ++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 79 DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred hhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1236776554 3556776654433222111110 111233999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
|||||||++||++. ++.+.+.+.++.++ |.|+|++|||++.+. .+|+++++++
T Consensus 159 lllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~-~~~~~i~~l~ 211 (214)
T PRK13543 159 WLLDEPYANLDLEG------ITLVNRMISAHLRG-GGAALVTTHGAYAAP-PVRTRMLTLE 211 (214)
T ss_pred EEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecChhhhh-hhcceEEEEe
Confidence 99999999999999 99999999998775 899999999998774 6899999886
No 204
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=1.4e-25 Score=235.03 Aligned_cols=177 Identities=17% Similarity=0.197 Sum_probs=136.3
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+.
T Consensus 1 i~~~~l~~~~~~~~-~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPDG-PVILDNISLRI--KPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCCC-ccceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCCEEEECCeehHhcCHHH
Confidence 47899999996421 46899999999 99999999999999999999999999 44555641
Q ss_pred -cceeeEEcCCC-----ccchhHHHHHHh------------hCCCh-------------hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAMDL------------EGSDS-------------RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~ld~------------~g~~~-------------~er~e~~~~~ErQRv~iArAL 124 (825)
+..+|++++.. ++.+|+.+.... .+... .........+||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 23477876653 344555432110 00000 001112334499999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. +..+.+.++++. + |+|||++|||++.+. .||+++++++|+++..|+++++
T Consensus 154 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~--~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 154 IHNPRILIFDEATSALDYES------EHAIMRNMHDIC-A-GRTVIIIAHRLSTVK--NADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred hhCCCEEEEeCCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHH--hCCEEEEEECCEEEEEcCHHHH
Confidence 9 9999999999999999 999999999996 4 899999999998775 5999999999999999887665
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
+.
T Consensus 224 ~~ 225 (237)
T cd03252 224 LA 225 (237)
T ss_pred Hh
Confidence 43
No 205
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=239.42 Aligned_cols=184 Identities=18% Similarity=0.189 Sum_probs=141.1
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGR----------- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~----------- 74 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+.. .+..|+
T Consensus 18 ~~~l~~~nl~~~~~~---~~~l~~vs~~i--~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 18 HSVFEVEGVKVFYGG---FLALVDVHLKI--PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CceEEEeeEEEEeCC---eEEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 358999999999976 46899999999 9999999999999999999999999853100 012342
Q ss_pred ------ccceeeEEcCCC-----ccchhHHHHHHhhCCCh--hh---------------------hhhhhhHHHHHHHHH
Q 039839 75 ------SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDS--RE---------------------RGEDDTTFEKQSALF 120 (825)
Q Consensus 75 ------~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~--~e---------------------r~e~~~~~ErQRv~i 120 (825)
.+..+||+++.. ++.+|+.+.....+... .+ .......+|+||++|
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred cchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 123567887653 45666665432211110 00 001123349999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe---------
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED--------- 188 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~--------- 188 (825)
||||+ ++|||||||++||+.. +..+.++|.++.+ +.|||++|||++.+. .+||++++|+
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiii~sH~~~~~~-~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPIS------TRQVEELCLELKE--QYTIIMVTHNMQQAS-RVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHH-HhCCEEEEEeccccccccc
Confidence 99999 9999999999999999 9999999999964 689999999998774 5899999997
Q ss_pred CCeEEEecCcccccCC
Q 039839 189 IQKIWDAVPKPQTLKN 204 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~~ 204 (825)
+|+++..|++.+++.+
T Consensus 244 ~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 244 RGKLVEFSPTEQMFGS 259 (274)
T ss_pred CceEEEeCCHHHHHhC
Confidence 7999999988776543
No 206
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.8e-25 Score=226.25 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=133.7
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------c
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------Q 76 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------q 76 (825)
.|+++|+++.|+... -..+++++++.+ .+|++++|+|||||||||||++|+|+.. ..+..|+. +
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYV--KPGTLTALMGESGAGKTTLLDVLAGRKT--AGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEEECCEehHHHhh
Confidence 689999999996411 145899999999 9999999999999999999999999742 13455641 2
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPL 147 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~ 147 (825)
..++++++. .++.+|+.+..... .....|+||++||+|++ ++||+||||++||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~------ 143 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALLR---------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA------ 143 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHHh---------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH------
Confidence 346777654 24456665532211 45777999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEecCCCC-ccccccCcEEEEeC-CeEEEec
Q 039839 148 LKTVFQVMMRLFSPRKTTLLFVIRDKTK-TPLEYLEPILREDI-QKIWDAV 196 (825)
Q Consensus 148 ~~~V~elL~~L~~~~g~TIL~VTHDl~~-a~l~~~drvlvl~~-GkI~~~g 196 (825)
+..+++.++++.++ |+|+|+||||++. .. ..||++++|++ |+++..|
T Consensus 144 ~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~-~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 144 AYNIVRFLKKLADS-GQAILCTIHQPSASIF-EKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEEcCChHHHH-hhCCEEEEEcCCCeEEeCC
Confidence 99999999998765 8999999999973 42 47999999998 9998654
No 207
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.4e-25 Score=234.36 Aligned_cols=183 Identities=15% Similarity=0.144 Sum_probs=140.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGR------------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~------------ 74 (825)
.||+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+... ...+.+|+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGK---FEALKGIDLDF--NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECC---eeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 47999999999975 56899999999 99999999999999999999999997420 00012342
Q ss_pred -----ccceeeEEcCCC-----ccchhHHHHHHhhCCChh----hh---------------------hhhhhHHHHHHHH
Q 039839 75 -----SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDSR----ER---------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 75 -----~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~----er---------------------~e~~~~~ErQRv~ 119 (825)
....+|+++|.. ++.+|+.+.....+.... +. ......+|+||++
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred ccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 123477877653 556777665433332110 00 0011223999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||+|++ ++|||||||++||+.. ++.+.++|.++.+ +.|+|+||||++.+. .+||+++++++|+++..|
T Consensus 159 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~-~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPIS------STQIENMLLELRD--QYTIILVTHSMHQAS-RISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEECCHHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 9999999999964 489999999998773 589999999999999998
Q ss_pred CcccccCC
Q 039839 197 PKPQTLKN 204 (825)
Q Consensus 197 ~~~e~l~~ 204 (825)
++.+.+.+
T Consensus 230 ~~~~~~~~ 237 (252)
T PRK14255 230 DTKQMFLN 237 (252)
T ss_pred CHHHHhcC
Confidence 77665543
No 208
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.9e-25 Score=230.60 Aligned_cols=166 Identities=15% Similarity=0.159 Sum_probs=127.1
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
+.+ +++|+|++ ..+ ++++.+ .+ ++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 2 ~~~-~l~~~~~~---~~~--~vsl~i--~~-e~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 2 LCV-DIEKRLPD---FTL--KIDFDL--NE-EVTGIFGASGAGKSTLLRCIAGLE----KPDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred cee-eeeEecCC---eee--CceEEE--cc-eeEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEecccccchh
Confidence 344 99999987 334 999999 99 999999999999999999999994 4455531
Q ss_pred -----cceeeEEcCC------CccchhHHHHHHhhCCChh--hh-----------------hhhhhHHHHHHHHHHHHHH
Q 039839 76 -----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSR--ER-----------------GEDDTTFEKQSALFALAIA 125 (825)
Q Consensus 76 -----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~--er-----------------~e~~~~~ErQRv~iArALa 125 (825)
+..+|++++. .++.+|+.+..... .... ++ ......+||||++||+|++
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh
Confidence 1246777654 34566665543211 0000 00 0111233999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
++|||||||++||++. ++.+.++++++.++.|+|+|++|||++.+. ..||+++++++|+++..|
T Consensus 148 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRAL------RLQLLPELKQIKKNLNIPVIFVTHDLSEAE-YLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEecCHHHHH-HhcCEEEEEECCEEEecC
Confidence 9999999999999999 999999999997655899999999998763 579999999999997654
No 209
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-25 Score=237.87 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=140.2
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS---------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~---------- 75 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. ..+.+|+.
T Consensus 8 ~~~l~i~~v~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 8 ETVLRTENLNVYYGS---FLAVKNVWLDI--PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred ceEEEEeeeEEEECC---EEEeecceEEE--cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 357999999999976 46899999999 999999999999999999999999984210 00233430
Q ss_pred -------cceeeEEcCCC-----ccchhHHHHHHhhCCCh--hhhh---------------------hhhhHHHHHHHHH
Q 039839 76 -------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS--RERG---------------------EDDTTFEKQSALF 120 (825)
Q Consensus 76 -------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~--~er~---------------------e~~~~~ErQRv~i 120 (825)
+..+|++++.. ++.+|+.+.....+... .++. .....+|+||++|
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence 23478887653 45667665433222110 0000 0122339999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe---------
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED--------- 188 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~--------- 188 (825)
|||++ ++|||||||++||+.. +..+.+++.++.+ +.|||++|||++.+. .+||++++|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tvi~vtH~~~~~~-~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPIS------TLRIEELMHELKE--QYTIIIVTHNMQQAA-RVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHH-HhCCEEEEEeccccccccc
Confidence 99999 9999999999999999 9999999999965 479999999998774 5899999998
Q ss_pred CCeEEEecCcccccC
Q 039839 189 IQKIWDAVPKPQTLK 203 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~ 203 (825)
.|+|++.|++.+++.
T Consensus 234 ~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 234 YGYLVEFDRTEKIFN 248 (264)
T ss_pred CceEEEeCCHHHHHh
Confidence 799999998777654
No 210
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=9e-26 Score=227.50 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=127.1
Q ss_pred EEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCcc--
Q 039839 11 QLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVG-- 88 (825)
Q Consensus 11 el~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~-- 88 (825)
+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+ ..|..|+.. ..|.-......
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i--~~G~~~~l~G~nGsGKStLl~~i~G~----~~~~~G~v~-~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSI--EAGEIVGILGPNGAGKSTLLKTLAGL----LKPSSGEIL-LDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEE-ECCEECCcCCHHH
Confidence 46899999975 46899999999 99999999999999999999999999 556777631 11111110000
Q ss_pred -chhHHH---HHHhhCCChh--hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhh
Q 039839 89 -IEPFTI---AMDLEGSDSR--ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 159 (825)
Q Consensus 89 -~enl~l---~ld~~g~~~~--er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~ 159 (825)
...+.+ .+...|.... .........|+||++||||++ +++||||||++||++. +..+.+++.++.
T Consensus 71 ~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~------~~~~~~~l~~~~ 144 (180)
T cd03214 71 LARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH------QIELLELLRRLA 144 (180)
T ss_pred HHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHH
Confidence 011111 2233343321 122345667999999999999 9999999999999999 999999999997
Q ss_pred CCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 160 SPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 160 ~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
++.+.|+|++|||++.+. ..||+++++++|++...
T Consensus 145 ~~~~~tiii~sh~~~~~~-~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 145 RERGKTVVMVLHDLNLAA-RYADRVILLKDGRIVAQ 179 (180)
T ss_pred HhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEec
Confidence 654789999999998773 58999999999998754
No 211
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=4.8e-25 Score=233.04 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=136.7
Q ss_pred CCCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------
Q 039839 3 MADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------- 75 (825)
Q Consensus 3 M~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------- 75 (825)
|.....+|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+.. ..+..|+.
T Consensus 1 ~~~~~~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 1 MNKNKPILEIKNLHASVNE---NEILKGLNLSI--NKGEIHAIMGPNGSGKSTLSKVIAGHPA--YKILEGDILFKGESI 73 (252)
T ss_pred CCCCCceEEEEeEEEEeCC---EEeeecceeEE--cCCcEEEEECCCCCCHHHHHHHHcCCCc--CcCCCceEEECCEEc
Confidence 4445568999999999975 46899999999 9999999999999999999999999721 23444531
Q ss_pred -------cc--eeeEEcCCC------ccchhHHHHHH-------------------------hhCCChh---hhh-hhhh
Q 039839 76 -------QT--TKGIWIAKC------VGIEPFTIAMD-------------------------LEGSDSR---ERG-EDDT 111 (825)
Q Consensus 76 -------q~--~~G~~~~~~------t~~enl~l~ld-------------------------~~g~~~~---er~-e~~~ 111 (825)
.. .++++++.. ++.+++.+... ..|.... ... +...
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 153 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFS 153 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCC
Confidence 11 234555542 23444433221 1111100 000 1234
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc-cCcEEEE
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY-LEPILRE 187 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~-~drvlvl 187 (825)
.+|+||++||+|++ +||||||||++||.+. +..+.++++++.++ |.|||+||||++.+. .. ||+++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~~tH~~~~~~-~~~~d~i~~l 225 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDA------LKIIAEGINKLMTS-ENSIILITHYQRLLD-YIKPDYVHVM 225 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hhhCCEEEEE
Confidence 55999999999999 9999999999999999 99999999999764 899999999998764 34 8999999
Q ss_pred eCCeEEEecCcc
Q 039839 188 DIQKIWDAVPKP 199 (825)
Q Consensus 188 ~~GkI~~~g~~~ 199 (825)
++|+++..|+++
T Consensus 226 ~~G~i~~~~~~~ 237 (252)
T CHL00131 226 QNGKIIKTGDAE 237 (252)
T ss_pred eCCEEEEecChh
Confidence 999999998765
No 212
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-25 Score=244.37 Aligned_cols=187 Identities=16% Similarity=0.148 Sum_probs=144.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGR------------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~------------ 74 (825)
.+|+++|+++.|... ...+++++++.+ .+|+++||+|||||||||||++|+|+....- .+..|.
T Consensus 79 ~~i~~~nls~~y~~~-~~~~L~~is~~I--~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMNR-TKHVLHDLNLDI--KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecCC-CceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 479999999999632 156899999999 9999999999999999999999999953100 133454
Q ss_pred -----ccceeeEEcCCC-----ccchhHHHHHHhhCCChhh-------------------------hhhhhhHHHHHHHH
Q 039839 75 -----SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDSRE-------------------------RGEDDTTFEKQSAL 119 (825)
Q Consensus 75 -----~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~e-------------------------r~e~~~~~ErQRv~ 119 (825)
.+..+||+++.+ ++.+|+.+.....+....+ .......+||||++
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 123577876653 5578887654322221111 01112233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||||++ +||||||||++||++. .+.+.+.|.++++ ++|+|+|||+++.+. .+||+|++|++|+|++.|
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~------~~~i~~~i~~l~~--~~Tii~iTH~l~~i~-~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIA------TAKIEELILELKK--KYSIIIVTHSMAQAQ-RISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 9999999999875 689999999998874 579999999999999999
Q ss_pred CcccccCCcc
Q 039839 197 PKPQTLKNTP 206 (825)
Q Consensus 197 ~~~e~l~~~~ 206 (825)
++.+++....
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9888765433
No 213
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.3e-25 Score=239.54 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=140.1
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC--cCCCc----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD--AFRGR---------- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~--~~~G~---------- 74 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+... .. +..|+
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~-~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADI--LSKYVTAIIGPSGCGKSTFLRAINRMNDL-IPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCCceEEEECCEEhhh
Confidence 357999999999975 46899999999 99999999999999999999999997320 01 13332
Q ss_pred -------ccceeeEEcCCC-----ccchhHHHHHHhhCCCh-h---hh---------------------hhhhhHHHHHH
Q 039839 75 -------SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDS-R---ER---------------------GEDDTTFEKQS 117 (825)
Q Consensus 75 -------~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~-~---er---------------------~e~~~~~ErQR 117 (825)
.+..+||+++.. ++.+|+.+.....+... . ++ ......+|+||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQR 190 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHH
Confidence 123477776653 55677766543322211 0 00 01112339999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++|||||+ ++|||||||++||++. +..+.+.++++.+ +.|||+||||++.+. .+||++++|++|+++.
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tvIivsH~~~~~~-~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKA------TAKIEDLIQELRG--SYTIMIVTHNMQQAS-RVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEeCCHHHHH-HhCCEEEEEECCEEEE
Confidence 99999999 9999999999999999 9999999999864 589999999998773 5799999999999999
Q ss_pred ecCcccccC
Q 039839 195 AVPKPQTLK 203 (825)
Q Consensus 195 ~g~~~e~l~ 203 (825)
.|++.+++.
T Consensus 262 ~g~~~~~~~ 270 (286)
T PRK14275 262 HAPTAQLFT 270 (286)
T ss_pred eCCHHHHHh
Confidence 988666543
No 214
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.92 E-value=2.5e-25 Score=221.86 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=125.8
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCC
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAK 85 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~ 85 (825)
|+++|+++.|+.. +.+++++++.+ .+|++++|+||||||||||+++|+|+ ..+.+|+. ...+||+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G~i~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEI--KPGDRLLITGPSGTGKSSLFRALAGL----WPWGSGRIGMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCceEEECCCceEEEECCC
Confidence 4689999999542 46899999999 99999999999999999999999999 45667763 2457888766
Q ss_pred C-----ccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHH
Q 039839 86 C-----VGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR 157 (825)
Q Consensus 86 ~-----t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~ 157 (825)
. ++.+|+.+. ........||||++||||++ ++|||||||++||++. +..+.+++.+
T Consensus 73 ~~~~~~tv~~nl~~~----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~ 136 (166)
T cd03223 73 PYLPLGTLREQLIYP----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES------EDRLYQLLKE 136 (166)
T ss_pred CccccccHHHHhhcc----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH------HHHHHHHHHH
Confidence 4 334444332 22345777999999999999 9999999999999999 9999999987
Q ss_pred hhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 158 LFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 158 L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
+ +.|+|+||||++... .||+++++++|..
T Consensus 137 ~----~~tiiivsh~~~~~~--~~d~i~~l~~~~~ 165 (166)
T cd03223 137 L----GITVISVGHRPSLWK--FHDRVLDLDGEGG 165 (166)
T ss_pred h----CCEEEEEeCChhHHh--hCCEEEEEcCCCC
Confidence 6 579999999997654 8999999987643
No 215
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=1.6e-25 Score=261.13 Aligned_cols=182 Identities=10% Similarity=0.105 Sum_probs=141.8
Q ss_pred ceEEEEEeEEEecCc--------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----
Q 039839 8 CCMQLIDGNGEFNVD--------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~--------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---- 75 (825)
++|+++|+++.|+.. .-..+++++++.+ .+|++++|+||||||||||+|+|+|+.+ .+|+.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----~~G~i~~~g 346 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL--RPGETLGLVGESGSGKSTTGLALLRLIN-----SQGEIWFDG 346 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCcEEEECC
Confidence 479999999999521 0146899999999 9999999999999999999999999852 33431
Q ss_pred --------------cceeeEEcCCC--------ccchhHHHHHHhhC--CChhhhh---------------------hhh
Q 039839 76 --------------QTTKGIWIAKC--------VGIEPFTIAMDLEG--SDSRERG---------------------EDD 110 (825)
Q Consensus 76 --------------q~~~G~~~~~~--------t~~enl~l~ld~~g--~~~~er~---------------------e~~ 110 (825)
+..+||++|.. ++.+|+.+.....+ .+..+.. ...
T Consensus 347 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 426 (529)
T PRK15134 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEF 426 (529)
T ss_pred EEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccC
Confidence 12478887763 55677766543221 1111110 011
Q ss_pred hHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 111 TTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 111 ~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
..+|||||+||+|++ ++|||||||++||+.. +..+++++++++++.|+|||+||||++.+. .+||++++|
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~-~~~d~i~~l 499 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTV------QAQILALLKSLQQKHQLAYLFISHDLHVVR-ALCHQVIVL 499 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHH-HhcCeEEEE
Confidence 223999999999999 9999999999999999 999999999998655899999999998773 589999999
Q ss_pred eCCeEEEecCcccccC
Q 039839 188 DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 ~~GkI~~~g~~~e~l~ 203 (825)
++|+|+..|++.+++.
T Consensus 500 ~~G~i~~~~~~~~~~~ 515 (529)
T PRK15134 500 RQGEVVEQGDCERVFA 515 (529)
T ss_pred ECCEEEEEcCHHHHhc
Confidence 9999999998776654
No 216
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.7e-25 Score=225.01 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=123.6
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+ ..+.+|+.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~----~~~~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNI--EAGEIVALLGPSGSGKSTLLRCIAGL----EEPDSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEECCEEccccchhH
Confidence 478999999976 56899999999 99999999999999999999999999 44555641
Q ss_pred ---cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHH
Q 039839 76 ---QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLK 149 (825)
Q Consensus 76 ---q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~ 149 (825)
+..++++++......+.. +.+.... .....|+||++||+|++ +++||||||+|||+.. +.
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t-~~~~l~~-------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~------~~ 137 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLT-VLENIAL-------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT------RR 137 (178)
T ss_pred HHHhhcEEEEecCCccCCCCC-HHHheee-------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH------HH
Confidence 123455554432111100 0010000 05677999999999999 9999999999999999 99
Q ss_pred HHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 150 TVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 150 ~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
.+++++.++.++.|+|+|+||||++... .+||++++|++|+
T Consensus 138 ~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~~g~ 178 (178)
T cd03229 138 EVRALLKSLQAQLGITVVLVTHDLDEAA-RLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEEeCCC
Confidence 9999999998754799999999997764 5799999999874
No 217
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2e-25 Score=234.85 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=144.3
Q ss_pred ceEEEEEeEEEecCcc------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeE
Q 039839 8 CCMQLIDGNGEFNVDG------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGI 81 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~ 81 (825)
++++++|+++.|.... ...++++|+|.+ .+||++||+|+||||||||-|+|.|+ ..|++|+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i--~~ge~~glVGESG~GKSTlgr~i~~L----~~pt~G~i------ 70 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSI--KEGETLGLVGESGCGKSTLGRLILGL----EEPTSGEI------ 70 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEE--cCCCEEEEEecCCCCHHHHHHHHHcC----cCCCCceE------
Confidence 4799999999995421 136789999999 99999999999999999999999999 67888872
Q ss_pred EcCCCc-----c---chhHHHHHHhhCCChhhhh---hhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHH
Q 039839 82 WIAKCV-----G---IEPFTIAMDLEGSDSRERG---EDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPL 147 (825)
Q Consensus 82 ~~~~~t-----~---~enl~l~ld~~g~~~~er~---e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~ 147 (825)
+|.... . .+.+.-.++..|.+..... ......||||+.|||||+ +++++|||++.||.--
T Consensus 71 ~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi------ 144 (268)
T COG4608 71 LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV------ 144 (268)
T ss_pred EEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH------
Confidence 222111 1 1223334455554432221 123455999999999999 9999999999999888
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 148 LKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 148 ~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
+..+.++|+++.++.|.|.+|+|||+..+. .+||++++|+.|+|++.|+..+++.+
T Consensus 145 qaqIlnLL~dlq~~~~lt~lFIsHDL~vv~-~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 145 QAQILNLLKDLQEELGLTYLFISHDLSVVR-YISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEHHhhh-hhcccEEEEecCceeEecCHHHHhhC
Confidence 999999999999989999999999999985 68999999999999999999888763
No 218
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=238.49 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=138.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~~----------- 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+.. .|..|+.
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDI--PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 47999999999976 56999999999 9999999999999999999999999953100 1344431
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCCCh--h---------------------hhhhhhhHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS--R---------------------ERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~--~---------------------er~e~~~~~ErQRv~iA 121 (825)
+..+|+++|.. ++.+|+.+.....+... . ........+||||++||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 22467776653 45677765443222111 0 00111233499999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEE-EEeCCeEEEecC
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPIL-REDIQKIWDAVP 197 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvl-vl~~GkI~~~g~ 197 (825)
+||+ +||||||||++||++. +..+.++|+++.+ +.|||++|||++.+. .+||+++ ++++|+|+..|+
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~------~~~l~~~L~~~~~--~~tiii~tH~~~~i~-~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVA------TSKIEDLIEELAE--EYTVVIVTHNMQQAA-RISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHH-hhcCEEEEEeeCCEEEEeCC
Confidence 9999 9999999999999999 9999999999975 379999999998764 5799975 679999999887
Q ss_pred ccccc
Q 039839 198 KPQTL 202 (825)
Q Consensus 198 ~~e~l 202 (825)
+.+.+
T Consensus 264 ~~~~~ 268 (285)
T PRK14254 264 TDKIF 268 (285)
T ss_pred HHHHH
Confidence 66554
No 219
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=1.5e-25 Score=234.85 Aligned_cols=176 Identities=16% Similarity=0.120 Sum_probs=134.4
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+...-..+++++++.+ .+|++++|+||||||||||+++|+|+ ..+.+|+.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~----~~~~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTI--PPGKTVALVGSSGCGKSTVVSLLERF----YDPTSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEe--cCCCEEEEEeCCCCCHHHHHHHHhcc----CCCCCCEEEECCEehhhcCHHH
Confidence 46899999996421135899999999 99999999999999999999999999 45566641
Q ss_pred -cceeeEEcCCC-----ccchhHHHHHHhh------------CCChh-------------hhhhhhhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAMDLE------------GSDSR-------------ERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~ld~~------------g~~~~-------------er~e~~~~~ErQRv~iArAL 124 (825)
...+||+++.. ++.+|+.+..... +.... .........|+||++||+|+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 13477776653 3344443321100 00000 00012244599999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||+|||+.. +..+++.++++. + |+|+|++|||++.+. .||+++++++|++...++.++.
T Consensus 155 ~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~--~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 155 LRNPKILLLDEATSALDAES------EKLVQEALDRAM-K-GRTTIVIAHRLSTIR--NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred hcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHh--hCCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999 999999999986 4 899999999998875 7999999999999988875544
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=2.9e-25 Score=257.18 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=138.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. +.+|+.
T Consensus 1 ~l~i~~l~~~~~~---~~il~~isl~i--~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~--~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGG---VKALDGIDLEV--RPGECVGLCGENGAGKSTLMKILSGVYPHG--TWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCC---eEeecceEEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHH
Confidence 3899999999976 56899999999 999999999999999999999999995320 134541
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhh--C--CChhh---------------------hhhhhhHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLE--G--SDSRE---------------------RGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~--g--~~~~e---------------------r~e~~~~~ErQRv~iA 121 (825)
+..+||++|. .++.+|+.+..... + ....+ .......+|||||+||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred HHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 1347888765 35566665543211 0 11100 0112234499999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
+||+ ++|||||||++||++. +..+.++|+++.++ |+|||+||||++.+. .+||++++|++|+++..+++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviiitHd~~~~~-~~~d~i~~l~~G~i~~~~~~ 225 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKE------TEILLDIIRDLKAH-GVACVYISHKLNEVK-AVCDTICVIRDGQHVATKDM 225 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCcHHHHH-HhCCEEEEEeCCeEeeecCc
Confidence 9999 9999999999999999 99999999999865 999999999998774 58999999999999988876
Q ss_pred cc
Q 039839 199 PQ 200 (825)
Q Consensus 199 ~e 200 (825)
++
T Consensus 226 ~~ 227 (500)
T TIGR02633 226 ST 227 (500)
T ss_pred cc
Confidence 54
No 221
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5e-25 Score=226.28 Aligned_cols=175 Identities=11% Similarity=0.010 Sum_probs=133.6
Q ss_pred eEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 9 CMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
.+.++|+++.|+.. .-..++.++++.+ .+|++++|+|||||||||||++|+|+..+. .+.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~~~~G~i~i~g~~~~~~~~ 79 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVV--KPGEMVLVLGRPGSGCSTLLKALANRTEGN-VSVEGDIHYNGIPYKEFAE 79 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEE--CCCcEEEEECCCCCCHHHHHHHhcccCCCC-CCcceEEEECCEECccchh
Confidence 58899999999642 2257999999999 999999999999999999999999995310 044553
Q ss_pred -ccceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccC
Q 039839 75 -SQTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAAN 144 (825)
Q Consensus 75 -~q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~ 144 (825)
.+..+|++++. .++.+|+.+..... ...........|+||++||+|++ ++|||||||++||++.
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~--- 153 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--- 153 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhhc---cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH---
Confidence 12346777654 35566766554321 12223345667999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEec-CCCCccccccCcEEEEeCCeEEEec
Q 039839 145 KPLLKTVFQVMMRLFSPRKTTLLFVIR-DKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 145 ~~~~~~V~elL~~L~~~~g~TIL~VTH-Dl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
++.+++++.++.++.+.|+|+++| +.+.+. ..||++++|++|+++..|
T Consensus 154 ---~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~-~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 154 ---ALEILKCIRTMADVLKTTTFVSLYQASDEIY-DLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEEEcCCHHHHH-HhCCeEEEEECCEEEecC
Confidence 999999999997654667666655 445553 489999999999997653
No 222
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=4e-25 Score=226.59 Aligned_cols=168 Identities=16% Similarity=0.114 Sum_probs=130.4
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||+++|+|+.. ..|..|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTI--KKGEVHALMGPNGSGKSTLAKTIMGHPK--YEVTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEE--CCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCccEEEECCEECCcCCHHH
Confidence 478999999975 56999999999 9999999999999999999999999831 12444431
Q ss_pred --cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHH
Q 039839 76 --QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKT 150 (825)
Q Consensus 76 --q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~ 150 (825)
+..++|+++......... +.++. ..........|+||++||+|++ ++|||||||++||++. +..
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~-~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~~ 142 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGVK-NADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA------LRL 142 (200)
T ss_pred HhhCcEEEeecChhhccCcc-HHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHH
Confidence 123667666532211100 01110 0111245677999999999999 9999999999999999 999
Q ss_pred HHHHHHHhhCCCCcEEEEEecCCCCcccc-ccCcEEEEeCCeEEEecC
Q 039839 151 VFQVMMRLFSPRKTTLLFVIRDKTKTPLE-YLEPILREDIQKIWDAVP 197 (825)
Q Consensus 151 V~elL~~L~~~~g~TIL~VTHDl~~a~l~-~~drvlvl~~GkI~~~g~ 197 (825)
+++++.++.++ +.|+|++|||++.+. . .||+++++++|++...|+
T Consensus 143 l~~~L~~~~~~-~~tiii~sh~~~~~~-~~~~d~i~~l~~G~i~~~~~ 188 (200)
T cd03217 143 VAEVINKLREE-GKSVLIITHYQRLLD-YIKPDRVHVLYDGRIVKSGD 188 (200)
T ss_pred HHHHHHHHHHC-CCEEEEEecCHHHHH-HhhCCEEEEEECCEEEEEcc
Confidence 99999999765 899999999998763 5 599999999999998883
No 223
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=236.68 Aligned_cols=183 Identities=14% Similarity=0.162 Sum_probs=140.8
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-CcCCCcc----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-DAFRGRS---------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-~~~~G~~---------- 75 (825)
.++|+++|+++.|+. +.+++++++.+ .+|++++|+|||||||||||++|+|+..+.- .+.+|+.
T Consensus 19 ~~~l~i~nl~~~~~~---~~il~~vs~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 19 APAMAAVNLTLGFAG---KTVLDQVSMGF--PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred CcEEEEeeEEEEECC---EEEeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 458999999999976 57899999999 9999999999999999999999999953210 0234431
Q ss_pred ------cceeeEEcCC-----CccchhHHHHHHhhC-CChhhh------------------------hhhhhHHHHHHHH
Q 039839 76 ------QTTKGIWIAK-----CVGIEPFTIAMDLEG-SDSRER------------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 76 ------q~~~G~~~~~-----~t~~enl~l~ld~~g-~~~~er------------------------~e~~~~~ErQRv~ 119 (825)
...++|+++. .++.+|+.+.....+ ....+. .......|+||++
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred chhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 2346777665 355677765432211 111110 0112334999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||||++ +||||||||++||... ++.++++|.++.+ ++|||+||||++.+. .+||++++|++|+|...|
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~-~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTT------TEKIEEFIRSLAD--RLTVIIVTHNLAQAA-RISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999 9999999999999999 9999999999975 489999999998763 589999999999999998
Q ss_pred CcccccC
Q 039839 197 PKPQTLK 203 (825)
Q Consensus 197 ~~~e~l~ 203 (825)
++++++.
T Consensus 245 ~~~~~~~ 251 (276)
T PRK14271 245 PTEQLFS 251 (276)
T ss_pred CHHHHHh
Confidence 8766543
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.6e-25 Score=255.66 Aligned_cols=173 Identities=15% Similarity=0.107 Sum_probs=137.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDC--RAGQVHALMGENGAGKSTLLKILSGNY----QPDAGSILIDGQEMRFAST 73 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEE--eCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEECCCCCH
Confidence 47999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred ----cceeeEEcCC------CccchhHHHHHH--hhC-CChhhh--------------------hhhhhHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMD--LEG-SDSRER--------------------GEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld--~~g-~~~~er--------------------~e~~~~~ErQRv~iAr 122 (825)
...+||++|. .++.+|+.+... ..+ .+..+. ......+||||++||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence 1347887665 355677665321 111 111110 1112334999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
||+ +||||||||++||+.. +..++++++++.++ |+|||+||||++.+. .+||++++|++|+|+..++
T Consensus 154 al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiiitHd~~~~~-~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSARE------IEQLFRVIRELRAE-GRVILYVSHRMEEIF-ALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEeecC
Confidence 999 9999999999999999 99999999999765 899999999998773 5899999999999987664
No 225
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.5e-25 Score=228.18 Aligned_cols=175 Identities=19% Similarity=0.259 Sum_probs=134.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|+.. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSI--KPGETVAIVGPTGAGKTTLINLLMRFY----DPQKGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCEeHHHcCHH
Confidence 37899999999642 35899999999 999999999999999999999999994 4555641
Q ss_pred --cceeeEEcCCCc-----cchhHHHHHHhh------------CCChh-------------hhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKCV-----GIEPFTIAMDLE------------GSDSR-------------ERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~t-----~~enl~l~ld~~------------g~~~~-------------er~e~~~~~ErQRv~iArA 123 (825)
+..+||+++... +.+|+.+..... +.... ........+||||++||+|
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 234678776543 344443321100 10000 0011233459999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++|||||||+|||+.. ++.+++.+.++. + +.|||+||||++... .||++++|++|++...++.++
T Consensus 154 l~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~--~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 154 MLRDPKILILDEATSNIDTET------EKLIQEALEKLM-K-GRTSIIIAHRLSTIK--NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHh--hCCEEEEEeCCeEEEeCCHHH
Confidence 99 9999999999999999 999999999985 4 899999999998775 599999999999998776544
Q ss_pred c
Q 039839 201 T 201 (825)
Q Consensus 201 ~ 201 (825)
.
T Consensus 224 ~ 224 (229)
T cd03254 224 L 224 (229)
T ss_pred H
Confidence 3
No 226
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.1e-25 Score=231.94 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=137.1
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc-------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~------------- 75 (825)
-+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+..+ ...+..|+.
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDI--YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 478999999975 57899999999 99999999999999999999999998431 000234531
Q ss_pred ----cceeeEEcCCC-----ccchhHHHHHHhhCC--Chhh------------------------hhhhhhHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC-----VGIEPFTIAMDLEGS--DSRE------------------------RGEDDTTFEKQSALF 120 (825)
Q Consensus 76 ----q~~~G~~~~~~-----t~~enl~l~ld~~g~--~~~e------------------------r~e~~~~~ErQRv~i 120 (825)
...+||+++.. ++.+|+.+.....+. .... .......+||||++|
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred hHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 22467776653 445666654322221 0000 001122349999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|||++ ++|||||||++||+.. +..+.+.|.++. + ++|||+||||++.+. ..||++++|++|++...|+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiiisH~~~~~~-~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 161 ARAIAVKPTMLLMDEPCSALDPVA------TNVIENLIQELK-K-NFTIIVVTHSMKQAK-KVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHH-hhcCEEEEEECCEEEEeCC
Confidence 99999 9999999999999999 999999999985 4 799999999998763 5799999999999999888
Q ss_pred cccccC
Q 039839 198 KPQTLK 203 (825)
Q Consensus 198 ~~e~l~ 203 (825)
+.+++.
T Consensus 232 ~~~~~~ 237 (251)
T PRK14244 232 TQEIFK 237 (251)
T ss_pred HHHHhc
Confidence 766544
No 227
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=8.5e-25 Score=226.40 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=130.0
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|..|+.
T Consensus 3 l~~~~l~~~~~~~~-~~~l~~i~~~i--~~G~~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSYPNQE-IPALDNVSLTI--RAGEKVAIIGRVGSGKSTLLKLLAGLY----KPTSGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEcCCCC-cccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCeEEECCEEhHHCCHHH
Confidence 78999999996421 35899999999 999999999999999999999999994 4455531
Q ss_pred -cceeeEEcCCC-----ccchhHHHHH------------HhhCCChhhh-------------hhhhhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAM------------DLEGSDSRER-------------GEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~l------------d~~g~~~~er-------------~e~~~~~ErQRv~iArAL 124 (825)
+..+|++++.. ++.+|+.+.. ...+...... ......+|+||++||+|+
T Consensus 76 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 76 LRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred HHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 12467776654 3345543321 1111111000 013445599999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+ ++|||||||++||+.. +..++++++++.+ ++|||+||||++... +||+++++++|+++..
T Consensus 156 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~--~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNS------EERLKERLRQLLG--DKTLIIITHRPSLLD--LVDRIIVMDSGRIVAD 219 (220)
T ss_pred hcCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHHH--hCCEEEEEeCCeEeec
Confidence 9 9999999999999999 9999999999875 389999999998653 8999999999998754
No 228
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=252.84 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=139.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----c-eeeE-
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----T-TKGI- 81 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~-~~G~- 81 (825)
+|++++|+++.|+......+++++++.+ .+|++++|+|||||||||||++|+|+ ..|..|+.. . ..++
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI--~~GEivgIiGpNGSGKSTLLkiLaGL----l~P~sGeI~I~G~~~~i~~~ 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEV--PEGEIVGIIGLNGSGKSTLSNLIAGV----TMPNKGTVDIKGSAALIAIS 93 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEE--eCCCEEEEEcCCCCCHHHHHHHHhCC----CCCCceEEEECCEeeeEEec
Confidence 3678888888876532346899999999 99999999999999999999999999 456667621 0 1111
Q ss_pred --EcCCCccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---HHheecCCCCC
Q 039839 82 --WIAKCVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA---DIVLINMWCHD 136 (825)
Q Consensus 82 --~~~~~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa---~VLLLDEPtsg 136 (825)
+.+..++.+|+.+.....+.+..+..+ ....+||||++|||||+ ++|||||||++
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 234457778876643333332211111 11233999999999999 99999999999
Q ss_pred CccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 137 LD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
||+.. +..+++.|.++.++ |.|||+||||++.+. ..||++++|++|++...|++++++
T Consensus 174 LD~~s------r~~LlelL~el~~~-G~TIIIVSHdl~~i~-~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 174 GDQTF------TKKCLDKMNEFKEQ-GKTIFFISHSLSQVK-SFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred CCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999 99999999998754 899999999998773 579999999999999999876654
No 229
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=3.5e-25 Score=246.82 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=144.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+.+++++++|.|++ ...+++|++++ .+|||+||+|.||||||||+++|+|+ +.|++|+.
T Consensus 3 ~~l~~~~itK~f~~---~~And~V~l~v--~~GeIHaLLGENGAGKSTLm~iL~G~----~~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG---VVANDDVSLSV--KKGEIHALLGENGAGKSTLMKILFGL----YQPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC---EEecCceeeee--cCCcEEEEeccCCCCHHHHHHHHhCc----ccCCcceEEECCEEeccCCH
Confidence 47999999999986 67899999999 99999999999999999999999999 67777761
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhh---CCChhhhhhhhhHH--------------------HHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLE---GSDSRERGEDDTTF--------------------EKQSALFAL 122 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~---g~~~~er~e~~~~~--------------------ErQRv~iAr 122 (825)
..-+|+++|+ .|+.||+.+..... ..+.+...+.+..+ |||||.|-+
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHH
Confidence 2347888665 46788888876532 11222222222221 999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||. ++|||||||+-|-|.. .+.+|+.+++|.++ |+|||||||-+.++ ++.|||+-+|..|+++...++
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E------~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev-~~iaDrvTVLR~Gkvvgt~~~ 224 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQE------ADELFEILRRLAAE-GKTIIFITHKLKEV-MAIADRVTVLRRGKVVGTVDP 224 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHH-HHhhCeeEEEeCCeEEeeecC
Confidence 999 9999999999998888 99999999999987 99999999999877 468999999999999887763
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=5e-25 Score=256.42 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=140.2
Q ss_pred ceEEEEEeEEEecC--ccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------
Q 039839 8 CCMQLIDGNGEFNV--DGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~--~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------- 75 (825)
.+|+++|+++.|+. .....+++++++.+ .+|++++|+||||||||||||+|+|+.. |.+|+.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEV--KEGEIFGIVGTSGAGKTTLSKIIAGVLE----PTSGEVNVRVGDEWVD 351 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEEecCCcccc
Confidence 47999999999952 11145899999999 9999999999999999999999999953 333321
Q ss_pred ------------cceeeEEcCC------CccchhHHHHHHh-----------------hCCCh-------hhhhhhhhHH
Q 039839 76 ------------QTTKGIWIAK------CVGIEPFTIAMDL-----------------EGSDS-------RERGEDDTTF 113 (825)
Q Consensus 76 ------------q~~~G~~~~~------~t~~enl~l~ld~-----------------~g~~~-------~er~e~~~~~ 113 (825)
...+||++|. .++.+|+.+.+.. .|... .........+
T Consensus 352 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 352 MTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred ccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHH
Confidence 1236888765 3556666543211 12211 0111223445
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
|||||+||+||+ +||||||||++||+.. +..++++++++.++.|.|||+||||++.+. .+||++++|++|
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~-~~~d~i~~l~~G 504 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPIT------KVDVTHSILKAREEMEQTFIIVSHDMDFVL-DVCDRAALMRDG 504 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHH-HhCCEEEEEECC
Confidence 999999999999 9999999999999999 999999999998656899999999998773 589999999999
Q ss_pred eEEEecCcccc
Q 039839 191 KIWDAVPKPQT 201 (825)
Q Consensus 191 kI~~~g~~~e~ 201 (825)
+++..|++.++
T Consensus 505 ~i~~~g~~~~~ 515 (520)
T TIGR03269 505 KIVKIGDPEEI 515 (520)
T ss_pred EEEEECCHHHH
Confidence 99988876554
No 231
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.2e-25 Score=220.18 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=122.2
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+... ..++.++++.+ .+|++++|+||||||||||+++|+|+ ..+..|+.
T Consensus 1 l~~~~l~~~~~~~~-~~~l~~i~~~i--~~G~~~~l~G~nGsGKstLl~~i~G~----~~~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGRP-KPVLKDVSLTI--KPGEKVAIVGPSGSGKSTLLKLLLRL----YDPTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCCC-cccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCCEEEECCEEhhhcCHHH
Confidence 47899999997521 26899999999 99999999999999999999999999 44566641
Q ss_pred -cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHH
Q 039839 76 -QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTV 151 (825)
Q Consensus 76 -q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V 151 (825)
+..+|++++...... . .+.+. .....|+||++||+|++ ++|||||||++||+.. +..+
T Consensus 74 ~~~~i~~~~~~~~~~~-~-t~~e~----------lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~------~~~l 135 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-G-TIREN----------ILSGGQRQRIAIARALLRDPPILILDEATSALDPET------EALI 135 (171)
T ss_pred HHhhEEEEcCCchhcc-c-hHHHH----------hhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHH
Confidence 123566665532111 0 11111 15677999999999999 9999999999999999 9999
Q ss_pred HHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 152 FQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 152 ~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
.+++.++. + ++|+|++|||++... . ||+++++++|+
T Consensus 136 ~~~l~~~~-~-~~tii~~sh~~~~~~-~-~d~~~~l~~g~ 171 (171)
T cd03228 136 LEALRALA-K-GKTVIVIAHRLSTIR-D-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHhc-C-CCEEEEEecCHHHHH-h-CCEEEEEcCCC
Confidence 99999985 3 699999999998875 4 99999999874
No 232
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=8.5e-25 Score=226.92 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=131.3
Q ss_pred EEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 10 MQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
|+++|+++.|+... -..+++++++.+ .+|++++|+||||||||||+++|+|+. .+.+|+.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i--~~G~~~~I~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEI--NPGEIVILTGPSGSGKTTLLTLIGGLR----SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEhHhcCHh
Confidence 78999999996411 145899999999 999999999999999999999999994 4555531
Q ss_pred -----cceeeEEcCC------CccchhHHHHHHhhC-CChhhhhhh--------------------hhHHHHHHHHHHHH
Q 039839 76 -----QTTKGIWIAK------CVGIEPFTIAMDLEG-SDSRERGED--------------------DTTFEKQSALFALA 123 (825)
Q Consensus 76 -----q~~~G~~~~~------~t~~enl~l~ld~~g-~~~~er~e~--------------------~~~~ErQRv~iArA 123 (825)
+..+|++++. .++.+|+.+.....+ ....+..+. ....|+||++||+|
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 1346777655 355667766543322 111111011 11229999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
++ ++|||||||++||.+. +..+.++++++.++.++|+|++|||++.. .+||+++++++|++
T Consensus 156 l~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sh~~~~~--~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKS------GRDVVELMQKLAREQGCTILIVTHDNRIL--DVADRIVHMEDGKL 219 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHH--hhCCEEEEEECCEE
Confidence 99 9999999999999999 99999999999864589999999999854 48999999999986
No 233
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.6e-25 Score=232.86 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=141.7
Q ss_pred CCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC-cCCCc---------
Q 039839 5 DECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD-AFRGR--------- 74 (825)
Q Consensus 5 ~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~-~~~G~--------- 74 (825)
+....+.++++++.|+. ..+++++++.+ .+|++++|+|+||||||||+++|+|+..+..+ +.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 4 EAPIVMDCKLDKIFYGN---FMAVRDSHVPI--RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CCCceEEEEeEEEEeCC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 44567999999999976 56899999999 99999999999999999999999999542100 13453
Q ss_pred --------ccceeeEEcCC-----CccchhHHHHHHhhCCChh--hh---------------------hhhhhHHHHHHH
Q 039839 75 --------SQTTKGIWIAK-----CVGIEPFTIAMDLEGSDSR--ER---------------------GEDDTTFEKQSA 118 (825)
Q Consensus 75 --------~q~~~G~~~~~-----~t~~enl~l~ld~~g~~~~--er---------------------~e~~~~~ErQRv 118 (825)
.+..+|++++. .++.+|+.+.....+.... ++ .......|+||+
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 79 GKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 02346777655 3556777654322111100 00 011233499999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe-------
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED------- 188 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~------- 188 (825)
+||||++ ++|||||||+|||+.. +..++++++++. + ++|+|++|||++.+. .+||++++|+
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~------~~~l~~~l~~~~-~-~~tii~isH~~~~i~-~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIA------TRRVEELMVELK-K-DYTIALVTHNMQQAI-RVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHH-HhCCEEEEEeccccccc
Confidence 9999999 9999999999999999 999999999995 3 689999999998763 5899999995
Q ss_pred -CCeEEEecCcccccC
Q 039839 189 -IQKIWDAVPKPQTLK 203 (825)
Q Consensus 189 -~GkI~~~g~~~e~l~ 203 (825)
+|+++..|++++++.
T Consensus 230 ~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 230 RTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCceEEEeCCHHHHHh
Confidence 899999998776654
No 234
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=5.6e-25 Score=235.29 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=138.2
Q ss_pred ceEEEEEeEEEecCc-----------------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc
Q 039839 8 CCMQLIDGNGEFNVD-----------------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA 70 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~-----------------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~ 70 (825)
..+.|.|+++.|... ....++.++++.+ .+|++++|+|||||||||||++|+|+ +.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i--~~Ge~~~liG~NGsGKSTLlk~L~Gl----~~p 76 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKA--YEGDVIGLVGINGSGKSTLSNIIGGS----LSP 76 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----cCC
Confidence 469999999998431 1134788999999 99999999999999999999999999 556
Q ss_pred CCCccc--ceeeEE------cCCCccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHH
Q 039839 71 FRGRSQ--TTKGIW------IAKCVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFAL 122 (825)
Q Consensus 71 ~~G~~q--~~~G~~------~~~~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iAr 122 (825)
..|... ...+++ .+..++.+|+.+.....+.+..+..+ ....+|+||++||+
T Consensus 77 ~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Lar 156 (264)
T PRK13546 77 TVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSI 156 (264)
T ss_pred CceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 667521 111222 23346677776544333332221111 11223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|++ ++|||||||++||+.. +..+++.+.++.+. |.|+|++|||++.+. ..||+++++++|+|...|+.+
T Consensus 157 al~~~p~iLlLDEPt~gLD~~~------~~~l~~~L~~~~~~-g~tiIiisH~~~~i~-~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 157 NITVNPDILVIDEALSVGDQTF------AQKCLDKIYEFKEQ-NKTIFFVSHNLGQVR-QFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHH-HHcCEEEEEECCEEEEeCCHH
Confidence 999 9999999999999998 99999999998754 899999999998764 579999999999999988766
Q ss_pred ccc
Q 039839 200 QTL 202 (825)
Q Consensus 200 e~l 202 (825)
+..
T Consensus 229 ~~~ 231 (264)
T PRK13546 229 DVL 231 (264)
T ss_pred HHH
Confidence 543
No 235
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.7e-25 Score=255.85 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=138.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+...-..+++++++.+ .+|++++|+||||||||||||+|+|+..+ +.+|+.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~---~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSL--RRGEILGIAGLVGAGRTELVQCLFGAYPG---RWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccccccccccceeeEE--cCCcEEEEeCCCCCCHHHHHHHHhCCCCC---CCCcEEEECCEECCCCCH
Confidence 4799999999994210145899999999 99999999999999999999999999431 234431
Q ss_pred ----cceeeEEcCC---------CccchhHHHHHH--hhC---CChhhh---------------------hhhhhHHHHH
Q 039839 76 ----QTTKGIWIAK---------CVGIEPFTIAMD--LEG---SDSRER---------------------GEDDTTFEKQ 116 (825)
Q Consensus 76 ----q~~~G~~~~~---------~t~~enl~l~ld--~~g---~~~~er---------------------~e~~~~~ErQ 116 (825)
+..+||++|. .++.+|+.+... ..+ .+..+. ......+|||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 1236887765 244566654321 111 011100 0112334999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
||+||+|++ ++|||||||+|||+.. ++.+++++.++.++ |+|||+||||++.+. .+||++++|++|+|+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~-~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGA------KYEIYKLINQLVQQ-GVAIIVISSELPEVL-GLSDRVLVMHEGKLK 484 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHH-HhCCEEEEEECCEEE
Confidence 999999999 9999999999999999 99999999999876 999999999998773 589999999999999
Q ss_pred EecCcccc
Q 039839 194 DAVPKPQT 201 (825)
Q Consensus 194 ~~g~~~e~ 201 (825)
..++++++
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 98876654
No 236
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.8e-25 Score=232.64 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=140.2
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc--CCCc----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA--FRGR---------- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~--~~G~---------- 74 (825)
.++|.++|++++|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+..+..+. ..|+
T Consensus 8 ~~~i~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~ 82 (257)
T PRK14246 8 EDVFNISRLYLYIND---KAILKDITIKI--PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82 (257)
T ss_pred hhheeeeeEEEecCC---ceeEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc
Confidence 468999999999987 56899999999 999999999999999999999999995432210 0121
Q ss_pred -----ccceeeEEcCC------CccchhHHHHHHhhCCC-hhhh------------------------hhhhhHHHHHHH
Q 039839 75 -----SQTTKGIWIAK------CVGIEPFTIAMDLEGSD-SRER------------------------GEDDTTFEKQSA 118 (825)
Q Consensus 75 -----~q~~~G~~~~~------~t~~enl~l~ld~~g~~-~~er------------------------~e~~~~~ErQRv 118 (825)
.+..+||+++. .++.+|+.+.....+.. ..+. .......||||+
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 12346777554 34566776553322211 1000 001122399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||||++ ++|||||||++||... ++.+.+++.++.+ +.|||+||||++.+. ..||+++++++|++...
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiilvsh~~~~~~-~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVN------SQAIEKLITELKN--EIAIVIVSHNPQQVA-RVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CcEEEEEECCHHHHH-HhCCEEEEEECCEEEEE
Confidence 9999999 9999999999999999 9999999999964 689999999998773 57999999999999999
Q ss_pred cCcccccC
Q 039839 196 VPKPQTLK 203 (825)
Q Consensus 196 g~~~e~l~ 203 (825)
|++.++..
T Consensus 234 g~~~~~~~ 241 (257)
T PRK14246 234 GSSNEIFT 241 (257)
T ss_pred CCHHHHHh
Confidence 98776554
No 237
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=232.09 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=138.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc--CCCc------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA--FRGR------------ 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~--~~G~------------ 74 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+|+|||||||||++|+|+..+. ++ .+|+
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDI--YRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcCcc-cCCccceEEEECCEeccccc
Confidence 6999999999975 46899999999 999999999999999999999999985321 01 2342
Q ss_pred -----ccceeeEEcCCC-----ccchhHHHHHHhhCC-Chh---hh---------------------hhhhhHHHHHHHH
Q 039839 75 -----SQTTKGIWIAKC-----VGIEPFTIAMDLEGS-DSR---ER---------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 75 -----~q~~~G~~~~~~-----t~~enl~l~ld~~g~-~~~---er---------------------~e~~~~~ErQRv~ 119 (825)
....+|++++.. ++.+|+.+.....+. +.. ++ ......+|+||++
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160 (259)
T ss_pred cchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 012467776653 556777654322211 110 00 0112234999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe-----CCe
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED-----IQK 191 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~-----~Gk 191 (825)
||||++ ++|||||||++||+.. +..+.+.++++.+ +.|+|+||||++.+. .+||++++|+ +|+
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~i~-~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIA------TMKVEELIHSLRS--ELTIAIVTHNMQQAT-RVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHH-HhcCeEEEEeccCCCCce
Confidence 999999 9999999999999999 9999999999864 589999999998774 5899999997 599
Q ss_pred EEEecCcccccC
Q 039839 192 IWDAVPKPQTLK 203 (825)
Q Consensus 192 I~~~g~~~e~l~ 203 (825)
++..|++.+.+.
T Consensus 232 i~~~~~~~~~~~ 243 (259)
T PRK14260 232 MVEFGVTTQIFS 243 (259)
T ss_pred EEEeCCHHHHhc
Confidence 999998877654
No 238
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.92 E-value=5.7e-25 Score=225.29 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=122.5
Q ss_pred EEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------------
Q 039839 12 LIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------------- 75 (825)
Q Consensus 12 l~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------------- 75 (825)
++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .|..|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTI--EKGKMYAIIGESGSGKSTLLNIIGLLE----KFDSGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC---EEEEeceEEEE--eCCcEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEccccchhhHH
Confidence 4689999976 56899999999 999999999999999999999999994 4445531
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH-
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA- 125 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa- 125 (825)
+..+|++++. .++.+|+.+.....+....+..+. ...+|+||++||+||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1246776554 455677766443222221111111 1223999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
++|||||||++||+.. +..+.+.++++.++ |.|+|++|||++... .||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sh~~~~~~--~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKN------RDEVLDLLLELNDE-GKTIIIVTHDPEVAK--QADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHh--hcCEEEeC
Confidence 9999999999999999 99999999999865 899999999998654 79998764
No 239
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=232.59 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=139.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC-cCCCc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD-AFRGR------------ 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~-~~~G~------------ 74 (825)
.+|+++|+++.|+. +.++.++++.+ .+|++++|+|+|||||||||++|+|+..+.-+ +.+|+
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMV--HEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 47999999999976 56999999999 99999999999999999999999998532100 13332
Q ss_pred -------ccceeeEEcCCC-----ccchhHHHHHHhhCCChh----hh---------------------hhhhhHHHHHH
Q 039839 75 -------SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDSR----ER---------------------GEDDTTFEKQS 117 (825)
Q Consensus 75 -------~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~----er---------------------~e~~~~~ErQR 117 (825)
.+..+||+++.. ++.+|+.+.....+.... +. .......|+||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 023467776653 456777665432222110 00 00112239999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++||||++ ++|||||||++||+.. +..+.+.+.++.+ +.|+|+||||++.+. .+||+++++++|++..
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~--~~tiiivth~~~~~~-~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIA------TASIEELISDLKN--KVTILIVTHNMQQAA-RVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEecCHHHHH-HhCCEEEEEECCEEEE
Confidence 99999999 9999999999999999 9999999999964 689999999998773 5899999999999999
Q ss_pred ecCccccc
Q 039839 195 AVPKPQTL 202 (825)
Q Consensus 195 ~g~~~e~l 202 (825)
.|+.++.+
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 98876654
No 240
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=6e-25 Score=229.97 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=123.6
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----------ceeeEEcCC------Cccchh
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----------TTKGIWIAK------CVGIEP 91 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----------~~~G~~~~~------~t~~en 91 (825)
++++++.+ .+|++++|+||||||||||+++|+|+ ..|.+|+.. ...+++++. .++.+|
T Consensus 1 l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTI--QQGEFISLIGHSGCGKSTLLNLISGL----AQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVREN 74 (230)
T ss_pred CCceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHH
Confidence 35789999 99999999999999999999999999 455666520 123666554 466777
Q ss_pred HHHHHHh--hCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHH
Q 039839 92 FTIAMDL--EGSDSRERGE--------------------DDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKP 146 (825)
Q Consensus 92 l~l~ld~--~g~~~~er~e--------------------~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~ 146 (825)
+.+.... .+.+..+..+ ....+||||++||+|++ ++|||||||+|||+..
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~----- 149 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT----- 149 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH-----
Confidence 7665321 1222111111 11223999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 147 LLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 147 ~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++.+.+.+.++.++.|+|||+||||++.+. .+||++++|++|+++..|+..++
T Consensus 150 -~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 -RGNLQEELMQIWEEHRVTVLMVTHDVDEAL-LLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred -HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEEeCCcEecccCceec
Confidence 999999999997655899999999998763 58999999999999988765443
No 241
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.92 E-value=4.7e-25 Score=262.30 Aligned_cols=179 Identities=19% Similarity=0.225 Sum_probs=148.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
.++++|++++|+... ..++.++++.+ ++||.+||+|+||||||||+|+|.|+ ..|..|+
T Consensus 471 ~I~~~nvsf~y~~~~-~~vL~~isL~I--~~Ge~vaIvG~SGsGKSTL~KLL~gl----y~p~~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 471 EIEFENVSFRYGPDD-PPVLEDLSLEI--PPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543 (709)
T ss_pred eEEEEEEEEEeCCCC-cchhhceeEEe--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCceEEECCEeHHhcCHH
Confidence 599999999998743 36999999999 99999999999999999999999999 6777777
Q ss_pred -ccceeeEEcCCC-----ccchhHHHHHH------------hhCC-------------ChhhhhhhhhHHHHHHHHHHHH
Q 039839 75 -SQTTKGIWIAKC-----VGIEPFTIAMD------------LEGS-------------DSRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 75 -~q~~~G~~~~~~-----t~~enl~l~ld------------~~g~-------------~~~er~e~~~~~ErQRv~iArA 123 (825)
.+..+|++.|+. ++.||+.+... ..|. .-.|.+.....+||||++||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARa 623 (709)
T COG2274 544 SLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARA 623 (709)
T ss_pred HHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 246789997764 45667665321 1111 1123333445569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+. +||||||||++||.+. .+.|.+.|.++.. |+|+|+|+|.+.... .||+|++|+.|+|+.+|+.++
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~s------E~~I~~~L~~~~~--~~T~I~IaHRl~ti~--~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 624 LLSKPKILLLDEATSALDPET------EAIILQNLLQILQ--GRTVIIIAHRLSTIR--SADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred hccCCCEEEEeCcccccCHhH------HHHHHHHHHHHhc--CCeEEEEEccchHhh--hccEEEEccCCceeccCCHHH
Confidence 99 9999999999999999 9999999999975 799999999998886 899999999999999999888
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
.+..
T Consensus 694 ll~~ 697 (709)
T COG2274 694 LLAQ 697 (709)
T ss_pred HHHh
Confidence 7654
No 242
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.92 E-value=1.5e-24 Score=226.06 Aligned_cols=177 Identities=14% Similarity=0.080 Sum_probs=135.0
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc------------c
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------S 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------~ 75 (825)
.+.++|++++|.+.. ...+++++++.+ .+|++++|+||||||||||+++|+|+... ..+.+|+ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~-~~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHV--ESGQVMAILGSSGSGKTTLLDAISGRVEG-GGTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeecceeeeecCccccccccCceEEE--cCCeEEEEECCCCCCHHHHHHHHhCccCC-CCCCceEEEECCEECChHHh
Confidence 468999999996521 257899999999 99999999999999999999999999430 0045554 1
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCC---Chhh---hh-h-h----------------hhHHHHHHHHHHHHHH
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGS---DSRE---RG-E-D----------------DTTFEKQSALFALAIA 125 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~---~~~e---r~-e-~----------------~~~~ErQRv~iArALa 125 (825)
+..+|++++. .++.+|+.+.....+. .... +. + . ....|+||++||+|++
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 2346777654 3667777765432211 1100 00 0 1 1122999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC-CCccccccCcEEEEeCCeEEEec
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK-TKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl-~~a~l~~~drvlvl~~GkI~~~g 196 (825)
++|||||||+|||+.. +..+.+++.++.++ |.|+|++||++ +.+. .+||+++++++|+++..|
T Consensus 160 ~~p~illlDEP~~gLD~~~------~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~-~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFT------ALNLVSTLSQLARR-NRIVILTIHQPRSDLF-RLFDRILLLSSGEIVYSG 226 (226)
T ss_pred hCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCCCHHHH-HhCCEEEEEeCCEEEecC
Confidence 9999999999999999 99999999999765 89999999998 4553 589999999999998754
No 243
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=9.7e-25 Score=230.00 Aligned_cols=176 Identities=16% Similarity=0.050 Sum_probs=131.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|++ ..+++++++.+ .+|++++|+|||||||||||++|+|+.. ..+.+|+.
T Consensus 1 ~i~~~nl~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVED---KAILRGLNLEV--RPGEVHAIMGPNGSGKSTLSATLAGRED--YEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCC---eeeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHcCCcc--CCCCceEEEECCCccccCCHH
Confidence 4899999999976 56899999999 9999999999999999999999999831 12444431
Q ss_pred ---cceeeEEcCCCccc------hhHHHHHHh-------------------------hCCChh--h-hh-hhhhHHHHHH
Q 039839 76 ---QTTKGIWIAKCVGI------EPFTIAMDL-------------------------EGSDSR--E-RG-EDDTTFEKQS 117 (825)
Q Consensus 76 ---q~~~G~~~~~~t~~------enl~l~ld~-------------------------~g~~~~--e-r~-e~~~~~ErQR 117 (825)
+..+|++++..... .+..+.... .+.+.. . .. .....+||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 12366766654211 111111100 011000 0 00 1244569999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc-cCcEEEEeCCeEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY-LEPILREDIQKIW 193 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~-~drvlvl~~GkI~ 193 (825)
++||+|++ ++|||||||++||++. +..+.++++++.+. ++|||+||||++.+. .. ||+++++++|+++
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tiii~sH~~~~~~-~~~~d~i~~l~~g~i~ 225 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDA------LKIVADGVNSLRDG-KRSFIIVTHYQRILD-YIKPDYVHVLYQGRIV 225 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hhhCCEEEEEECCeEE
Confidence 99999999 9999999999999999 99999999999765 899999999997764 34 8999999999999
Q ss_pred EecCcc
Q 039839 194 DAVPKP 199 (825)
Q Consensus 194 ~~g~~~ 199 (825)
..|+++
T Consensus 226 ~~g~~~ 231 (248)
T PRK09580 226 KSGDFT 231 (248)
T ss_pred EeCCHH
Confidence 888654
No 244
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=2.2e-24 Score=221.70 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=133.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
..|+++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPDL-PPVLKNVSFKV--KAGEKIGIVGRTGAGKSTLILALFRFL----EAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCCC-cccccCceEEE--CCCCEEEEECCCCCCHHHHHHHHhccc----CCCCCeEEECCEEhHHCCH
Confidence 3699999999996421 36899999999 999999999999999999999999994 4555641
Q ss_pred ---cceeeEEcCCC-----ccchhHHHHHHhhCCChhh---------hhhhhhHHHHHHHHHHHHHH---HHheecCCCC
Q 039839 76 ---QTTKGIWIAKC-----VGIEPFTIAMDLEGSDSRE---------RGEDDTTFEKQSALFALAIA---DIVLINMWCH 135 (825)
Q Consensus 76 ---q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~e---------r~e~~~~~ErQRv~iArALa---~VLLLDEPts 135 (825)
...+||+++.. ++.+|+.+.. .....+ ........|+||++||||++ ++|||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~---~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFD---EYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccC---CCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 23477877654 3344443211 011110 11223445999999999999 9999999999
Q ss_pred CCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 136 gLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
+||++. +..+.++++++. + |.|+|++|||++.+. .||+++++++|++...|+
T Consensus 155 ~LD~~~------~~~l~~~l~~~~-~-~~tiii~th~~~~~~--~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 155 SIDYAT------DALIQKTIREEF-T-NSTILTIAHRLRTII--DYDKILVMDAGEVKEYDH 206 (207)
T ss_pred cCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHh--hCCEEEEEECCEEEecCC
Confidence 999999 999999999985 4 899999999998775 499999999999988775
No 245
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=2.1e-24 Score=222.27 Aligned_cols=162 Identities=10% Similarity=0.018 Sum_probs=125.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
|||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .+.+|+.
T Consensus 1 m~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 1 MMLEGEDLACVRGG---RVLFSGLSFTL--AAGEALVLTGPNGSGKTTLLRLIAGLL----PPAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred CEEEEEeEEEEECC---eEEEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEeCcchhh
Confidence 37999999999976 46899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhh----------------hhhhHHHHHHHHHHHHHH---HHhee
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG----------------EDDTTFEKQSALFALAIA---DIVLI 130 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~----------------e~~~~~ErQRv~iArALa---~VLLL 130 (825)
...+|++++. .++.+|+.+.....+....... .....+|+||++||+|++ ++|||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1235666433 3556776654433222111111 112334999999999999 99999
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 131 DEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
||||++||+.. +..+.+.+.++.++ |+|+|+||||++.++ . ++++.+.
T Consensus 152 DEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~--~-~~~~~~~ 199 (207)
T PRK13539 152 DEPTAALDAAA------VALFAELIRAHLAQ-GGIVIAATHIPLGLP--G-ARELDLG 199 (207)
T ss_pred eCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCchhhc--c-CcEEeec
Confidence 99999999999 99999999998765 999999999998886 3 8777664
No 246
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=2.2e-24 Score=223.55 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=131.9
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|++++|+... +.+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+.
T Consensus 3 l~~~~l~~~~~~~~-~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~----~~~~~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 3 IEFKNVSLRYRPNL-PPVLKNISFSI--KPGEKVGIVGRTGSGKSSLLLALFRL----VELSSGSILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEEEEecCCCC-cccccceEEEE--CCCCEEEEECCCCCCHHHHHHHHHcC----CCCCCCEEEECCEEhHhCCHHH
Confidence 78999999996421 46999999999 99999999999999999999999999 44555641
Q ss_pred -cceeeEEcCCC-----ccchhHHHH-----------HHhhCCChh-------------hhhhhhhHHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIA-----------MDLEGSDSR-------------ERGEDDTTFEKQSALFALAIA 125 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~-----------ld~~g~~~~-------------er~e~~~~~ErQRv~iArALa 125 (825)
...+|++++.. ++.+|+.+. ++..+.... .........|+||++||||++
T Consensus 76 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 76 LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 23467776654 334444321 011111110 011123345999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
++|||||||++||+.. +..+.++++++.+ +.|+|++|||++.+. .||++++|++|+++..|+
T Consensus 156 ~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~--~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 156 RKSKILVLDEATASVDPET------DALIQKTIREAFK--DCTVLTIAHRLDTII--DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred cCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHHh--hCCEEEEEECCeEEecCC
Confidence 9999999999999999 9999999999854 689999999998775 599999999999988764
No 247
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=2.3e-24 Score=221.39 Aligned_cols=162 Identities=11% Similarity=0.073 Sum_probs=124.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 1 MLEARNLACERDE---RILFSGLSFTL--NAGELVQIEGPNGAGKTSLLRILAGLA----RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred CeEEEEEEEEECC---EEEEecceEEE--CCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEcccchHH
Confidence 4899999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred -cceeeEEcCC------CccchhHHHHHHhhCCChhhhh-----------------hhhhHHHHHHHHHHHHHH---HHh
Q 039839 76 -QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG-----------------EDDTTFEKQSALFALAIA---DIV 128 (825)
Q Consensus 76 -q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~-----------------e~~~~~ErQRv~iArALa---~VL 128 (825)
+..++++++. .++.+|+.+.....+....++. ......|+||++||+|++ ++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 1235666443 4667777665433221111110 111223999999999999 999
Q ss_pred eecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 129 LLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
||||||++||++. +..+.++++++.++ |.|+|+||||++... ....|++++
T Consensus 152 llDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~i~-~~~~~~~~~ 202 (204)
T PRK13538 152 ILDEPFTAIDKQG------VARLEALLAQHAEQ-GGMVILTTHQDLPVA-SDKVRKLRL 202 (204)
T ss_pred EEeCCCccCCHHH------HHHHHHHHHHHHHC-CCEEEEEecChhhhc-cCCceEEec
Confidence 9999999999999 99999999999765 899999999997764 244466665
No 248
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=8.9e-25 Score=228.42 Aligned_cols=167 Identities=14% Similarity=0.070 Sum_probs=125.3
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------cceeeEEcCCC-------
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------QTTKGIWIAKC------- 86 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q~~~G~~~~~~------- 86 (825)
+++++++.+ .+|++++|+||||||||||+|+|+|+..+...+.+|+. ...+|++++..
T Consensus 1 ~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSL--KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 467889999 99999999999999999999999999432100155641 13578887664
Q ss_pred -ccchhHHHHHHhhCCChh-----------------------hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCcc
Q 039839 87 -VGIEPFTIAMDLEGSDSR-----------------------ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGR 139 (825)
Q Consensus 87 -t~~enl~l~ld~~g~~~~-----------------------er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~ 139 (825)
++.+++.+.....+.... ........+||||++||+|++ +||||||||+|||.
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 223444333222221110 011112334999999999999 99999999999999
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 140 EQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 140 Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
.. +..+.+.+.++.++.|+|||++|||++.+. .+||++++|++|++...|++++++
T Consensus 159 ~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 159 VN------QARVLKLLRELRQLFGTGILLITHDLGVVA-RIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 99 999999999997655899999999997763 479999999999999998876654
No 249
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.4e-25 Score=253.79 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=135.7
Q ss_pred EEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------------
Q 039839 12 LIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------------- 75 (825)
Q Consensus 12 l~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------------- 75 (825)
++|+++.|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|..
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKV--RPHSIHALMGENGAGKSTLLKCLFGIY----QKDSGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCEECCCCCHHHHH
Confidence 3688999976 56899999999 999999999999999999999999994 4455541
Q ss_pred cceeeEEcCCC------ccchhHHHHHH-hhCC--Chhhh--------------------hhhhhHHHHHHHHHHHHHH-
Q 039839 76 QTTKGIWIAKC------VGIEPFTIAMD-LEGS--DSRER--------------------GEDDTTFEKQSALFALAIA- 125 (825)
Q Consensus 76 q~~~G~~~~~~------t~~enl~l~ld-~~g~--~~~er--------------------~e~~~~~ErQRv~iArALa- 125 (825)
+..+|+++|.. ++.+|+.+... ..+. +..+. ......+|||||+||+||+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 13478887653 55666655321 1111 11110 1112234999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++|||||||++||+.. +..++++++++.++ |.|+|+||||++.+. .+||++++|++|+|+..|++.+.
T Consensus 152 ~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvii~tH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKE------VNHLFTIIRKLKER-GCGIVYISHKMEEIF-QLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH-HhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999 99999999999765 899999999998773 58999999999999999876654
No 250
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.91 E-value=1e-24 Score=212.77 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=118.1
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCC
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAK 85 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~ 85 (825)
++++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+ ..+.+|+. +..++|+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~--~~Ge~~~i~G~nGsGKStLl~~l~G~----~~~~~G~i~~~~~~~i~~~~~- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTI--NPGDRIGLVGRNGAGKSTLLKLIAGE----LEPDEGIVTWGSTVKIGYFEQ- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEE--CCCCEEEEECCCCCCHHHHHHHHcCC----CCCCceEEEECCeEEEEEEcc-
Confidence 468999999976 46899999999 99999999999999999999999999 55677763 123444443
Q ss_pred CccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCC
Q 039839 86 CVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR 162 (825)
Q Consensus 86 ~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~ 162 (825)
....|+||++||||++ +++|+|||+++||... +..+.+.++++
T Consensus 71 ------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~---- 116 (144)
T cd03221 71 ------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES------IEALEEALKEY---- 116 (144)
T ss_pred ------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHc----
Confidence 5677999999999999 9999999999999999 99999999886
Q ss_pred CcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 163 KTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 163 g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
+.|+|++||+++.+. ..||+++++++|+
T Consensus 117 ~~til~~th~~~~~~-~~~d~v~~l~~g~ 144 (144)
T cd03221 117 PGTVILVSHDRYFLD-QVATKIIELEDGK 144 (144)
T ss_pred CCEEEEEECCHHHHH-HhCCEEEEEeCCC
Confidence 369999999998774 5799999999885
No 251
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.4e-24 Score=227.59 Aligned_cols=182 Identities=16% Similarity=0.193 Sum_probs=138.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc-cCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR-EMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~-~~~~~~G~~----------- 75 (825)
++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+... ...+.+|+.
T Consensus 2 ~~l~~~~v~~~~~~---~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 2 YRIEVENLNTYFDD---AHILKNVNLDI--PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred cEEEEEeEEEEeCC---eEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 36999999999975 56899999999 99999999999999999999999998420 000234430
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhCCChhh----h---------------------hhhhhHHHHHHHH
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEGSDSRE----R---------------------GEDDTTFEKQSAL 119 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~e----r---------------------~e~~~~~ErQRv~ 119 (825)
...+||+++.. ++.+|+.+.....+....+ + .......|+||++
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred ccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH
Confidence 23467776653 3456665543222211100 0 0111233999999
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
||||++ ++|||||||+|||+.. +..+.+++.++. + +.|||+||||++.+. ..|++++++++|+++..|
T Consensus 157 laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sh~~~~~~-~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPIS------TTKIEDLIHKLK-E-DYTIVIVTHNMQQAT-RVSKYTSFFLNGEIIESG 227 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEECCHHHHH-hhcCEEEEEECCeEEEeC
Confidence 999999 9999999999999999 999999999995 3 789999999997764 579999999999999999
Q ss_pred CcccccC
Q 039839 197 PKPQTLK 203 (825)
Q Consensus 197 ~~~e~l~ 203 (825)
++++...
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14266 228 LTDQIFI 234 (250)
T ss_pred CHHHHHh
Confidence 8776543
No 252
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=6.4e-25 Score=232.36 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=133.4
Q ss_pred EEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------------
Q 039839 11 QLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------------- 75 (825)
Q Consensus 11 el~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------------- 75 (825)
+++|+++. .+++++++.+ .+|++++|+||||||||||+++|+|+.. + +|+.
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i--~~Gei~~l~G~nGsGKSTLl~~l~Gl~~----~-~G~i~~~g~~i~~~~~~~~ 67 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEV--RAGEILHLVGPNGAGKSTLLARMAGLLP----G-SGSIQFAGQPLEAWSAAEL 67 (248)
T ss_pred cccccchh-------ceecceEEEE--cCCCEEEEECCCCCCHHHHHHHHcCCCC----C-CeEEEECCEecCcCCHHHH
Confidence 46667664 2688999999 9999999999999999999999999852 2 3431
Q ss_pred cceeeEEcCCC------ccchhHHHHHHhhCCChhh---hh-----------------hhhhHHHHHHHHHHHHHH----
Q 039839 76 QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRE---RG-----------------EDDTTFEKQSALFALAIA---- 125 (825)
Q Consensus 76 q~~~G~~~~~~------t~~enl~l~ld~~g~~~~e---r~-----------------e~~~~~ErQRv~iArALa---- 125 (825)
...+||+++.. ++.+|+.+... .+....+ +. .....+||||++||+|++
T Consensus 68 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 68 ARHRAYLSQQQTPPFAMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred hhheEEecccCccCCCccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 12367776653 34566554321 1111111 00 011223999999999997
Q ss_pred ------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 126 ------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 126 ------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
++|||||||++||+.. +..+.++++++.++ |+|||++|||++.+. .+||++++|++|+++..|+..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~-~~~d~i~~l~~G~i~~~g~~~ 218 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQ------QAALDRLLSELCQQ-GIAVVMSSHDLNHTL-RHADRVWLLKQGKLLASGRRD 218 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH-HhCCEEEEEECCEEEEECCHH
Confidence 7999999999999999 99999999999765 899999999998663 589999999999999998876
Q ss_pred cccCCccccccccc
Q 039839 200 QTLKNTPLSEFFNV 213 (825)
Q Consensus 200 e~l~~~~l~d~f~~ 213 (825)
++.....+.+.|+.
T Consensus 219 ~~~~~~~~~~~~~~ 232 (248)
T PRK03695 219 EVLTPENLAQVFGV 232 (248)
T ss_pred HHhCchHHHHHhCC
Confidence 65544444445543
No 253
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.9e-24 Score=226.11 Aligned_cols=174 Identities=17% Similarity=0.156 Sum_probs=133.8
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+.. ..++.++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTI--PAGKKVAIVGPSGSGKSTILRLLFRFY----DVSSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----CCCCCEEEECCEEhhhCCHHH
Confidence 4689999999532 45899999999 999999999999999999999999994 4556641
Q ss_pred -cceeeEEcCCC-----ccchhHHHHHHh------------hCCChh-------------hhhhhhhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAMDL------------EGSDSR-------------ERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~ld~------------~g~~~~-------------er~e~~~~~ErQRv~iArAL 124 (825)
...+||+++.. ++.+|+.+.... .+.... ........+|+||++||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 12367776653 344555432110 011000 00112344599999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||++. +..+.+++.++.+ |.|+|+|||+++.+. .||+++++++|++...|+..+.
T Consensus 153 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sh~~~~~~--~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 153 LKNPPILLLDEATSALDTHT------EREIQAALRDVSK--GRTTIVIAHRLSTIV--NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred hcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhcC--CCEEEEEcCCHHHHH--hCCEEEEEECCEEEeeCCHHHH
Confidence 9 9999999999999999 9999999999864 899999999998775 4999999999999988775544
No 254
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=1.6e-24 Score=277.93 Aligned_cols=179 Identities=11% Similarity=0.077 Sum_probs=147.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|++|.|++.. +.+++++++++ .+||++||+||||||||||+|+|+|+ ..|++|+.
T Consensus 1936 ~~L~v~nLsK~Y~~~~-~~aL~~ISf~I--~~GEi~gLLG~NGAGKTTLlkmL~Gl----l~ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTS-SPAVDRLCVGV--RPGECFGLLGVNGAGKTTTFKMLTGD----TTVTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred ceEEEEEEEEEECCCC-ceEEEeeEEEE--cCCcEEEEECCCCCcHHHHHHHHhCC----CCCCccEEEECCEECcchHH
Confidence 4799999999997521 46899999999 99999999999999999999999999 44555551
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa-- 125 (825)
+..+||++|. .++.+++.+.....|.+..+..+. ...+||||++||+||+
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 2347888765 467888877666666543221111 1223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+||||||||+|||+.. ++.+++++.++.++ |+|||++||+++++. .+|||+++|++|+++..|++.++
T Consensus 2089 P~VLLLDEPTsGLDp~s------r~~l~~lL~~l~~~-g~TIILtTH~mee~e-~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQA------RRMLWNTIVSIIRE-GRAVVLTSHSMEECE-ALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999 99999999999876 999999999998774 58999999999999999987764
No 255
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2e-24 Score=252.01 Aligned_cols=173 Identities=13% Similarity=0.126 Sum_probs=134.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIA 84 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~ 84 (825)
||+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|..|.. ...+|+++|
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~Gl----~~p~~G~i~~~~~~~i~~~~q 71 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKF--GGGNRYGLIGANGCGKSTFMKILGGD----LEPSAGNVSLDPNERLGKLRQ 71 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEecCCCEEEEEec
Confidence 4899999999976 56999999999 99999999999999999999999999 45666762 235788766
Q ss_pred CC------ccchhHHHHHH--------------------------------------------------hhCCChh---h
Q 039839 85 KC------VGIEPFTIAMD--------------------------------------------------LEGSDSR---E 105 (825)
Q Consensus 85 ~~------t~~enl~l~ld--------------------------------------------------~~g~~~~---e 105 (825)
.. ++.+++.+... ..|.... .
T Consensus 72 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 151 (530)
T PRK15064 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYG 151 (530)
T ss_pred cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcC
Confidence 43 44555543210 0011100 0
Q ss_pred hhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC
Q 039839 106 RGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 106 r~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d 182 (825)
.......+|||||+||+||+ +||||||||++||++. +..+.+++.+ .|.|||+||||++.+. ..||
T Consensus 152 ~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~----~~~tiiivsHd~~~~~-~~~d 220 (530)
T PRK15064 152 LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT------IRWLEDVLNE----RNSTMIIISHDRHFLN-SVCT 220 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHh----CCCeEEEEeCCHHHHH-hhcc
Confidence 01123345999999999999 9999999999999999 9999998864 3899999999998764 5899
Q ss_pred cEEEEeCCeEE-EecCcccc
Q 039839 183 PILREDIQKIW-DAVPKPQT 201 (825)
Q Consensus 183 rvlvl~~GkI~-~~g~~~e~ 201 (825)
+++++++|+++ ..|++.+.
T Consensus 221 ~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 221 HMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred eEEEEeCCEEEEecCCHHHH
Confidence 99999999994 67765544
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=1.4e-24 Score=251.43 Aligned_cols=179 Identities=9% Similarity=0.068 Sum_probs=135.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+...-..+++++++.+ .+|++++|+||||||||||||+|+|+..+ +.+|+.
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p---~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSL--RRGEILGVAGLVGAGRTELVQALFGAYPG---KFEGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEE--eCCcEEEEeCCCCCCHHHHHHHHhCCCCC---CCCeEEEECCEECCCCCH
Confidence 4799999999993210145899999999 99999999999999999999999999531 234431
Q ss_pred ----cceeeEEcCCC---------ccchhHHHHHH--hh---CCChhh---h------------------hhhhhHHHHH
Q 039839 76 ----QTTKGIWIAKC---------VGIEPFTIAMD--LE---GSDSRE---R------------------GEDDTTFEKQ 116 (825)
Q Consensus 76 ----q~~~G~~~~~~---------t~~enl~l~ld--~~---g~~~~e---r------------------~e~~~~~ErQ 116 (825)
+..+|+++|.. ++.+|+.+... .. +..... . ......+|||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 12467877663 34555554321 10 011110 0 0112234999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|++||+|++ ++|||||||++||+.. +..+++++.++.++ |.|||+||||++.+. .+||+++++++|+|+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~-~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGA------KYEIYKLINQLAQE-GVAIIVVSSELAEVL-GLSDRVLVIGEGKLK 482 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHH-HhCCEEEEEECCEEE
Confidence 999999999 9999999999999999 99999999999876 999999999998773 589999999999999
Q ss_pred EecCcc
Q 039839 194 DAVPKP 199 (825)
Q Consensus 194 ~~g~~~ 199 (825)
..++.+
T Consensus 483 ~~~~~~ 488 (500)
T TIGR02633 483 GDFVNH 488 (500)
T ss_pred EEEccc
Confidence 877544
No 257
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=3.2e-24 Score=230.78 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=137.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
-|+++|+++.|.... ..+++++++.+ .+|++++|+|||||||||||++|+|+. . ..|+.
T Consensus 2 ~i~~~nls~~~~~~~-~~~l~~isl~I--~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~-~~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEGG-NAVLENISFSI--SPGQRVGLLGRTGSGKSTLLSAFLRLL----N-TEGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCCC-CcceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhhhc----C-CCcEEEECCEEhhhCCHH
Confidence 378999999995311 46899999999 999999999999999999999999994 2 34541
Q ss_pred --cceeeEEcCCCc-----cchhHHHH-----------HHhhCCChhhh-------------hhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKCV-----GIEPFTIA-----------MDLEGSDSRER-------------GEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~t-----~~enl~l~-----------ld~~g~~~~er-------------~e~~~~~ErQRv~iArAL 124 (825)
+..++|+++... +.+|+... ++..|...... +.....+|+||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 235788877653 34555311 01111111000 011344599999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +||||||||++||+.. .+.+.+.+++++. ++|||+||||++.+. .||++++|++|+++..|++.++
T Consensus 154 l~~p~illlDEpts~LD~~~------~~~l~~~l~~~~~--~~tii~isH~~~~i~--~~dri~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPIT------YQVIRKTLKQAFA--DCTVILSEHRIEAML--ECQRFLVIEENKVRQYDSIQKL 223 (275)
T ss_pred hcCCCEEEEECccccCCHHH------HHHHHHHHHHhcC--CCEEEEEECCHHHHH--hCCEEEEecCCeEeecCCHHHH
Confidence 9 9999999999999999 9999999998853 799999999998775 5999999999999999998877
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
+.
T Consensus 224 ~~ 225 (275)
T cd03289 224 LN 225 (275)
T ss_pred hh
Confidence 65
No 258
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=2.6e-24 Score=252.50 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=136.5
Q ss_pred ceEEEEEeEEEec-CccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE
Q 039839 8 CCMQLIDGNGEFN-VDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW 82 (825)
Q Consensus 8 ~~Lel~nlsk~y~-~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~ 82 (825)
+||+++|+++.|+ + +.+++++++.+ ..|++++|+|||||||||||++|+|+ ..|.+|.. ...+|++
T Consensus 5 ~~l~i~~l~~~y~~~---~~il~~vs~~i--~~Ge~~~iiG~NGsGKSTLlk~i~G~----~~p~~G~i~~~~~~~i~~v 75 (556)
T PRK11819 5 YIYTMNRVSKVVPPK---KQILKDISLSF--FPGAKIGVLGLNGAGKSTLLRIMAGV----DKEFEGEARPAPGIKVGYL 75 (556)
T ss_pred EEEEEeeEEEEeCCC---CeeeeCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEecCCCEEEEE
Confidence 4799999999997 4 57999999999 99999999999999999999999999 55667763 2457888
Q ss_pred cCC------CccchhHHHHHH-hh-------------CCCh-------------------------h-------------
Q 039839 83 IAK------CVGIEPFTIAMD-LE-------------GSDS-------------------------R------------- 104 (825)
Q Consensus 83 ~~~------~t~~enl~l~ld-~~-------------g~~~-------------------------~------------- 104 (825)
+|. .++.+|+.+... .. +... .
T Consensus 76 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 155 (556)
T PRK11819 76 PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP 155 (556)
T ss_pred ecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC
Confidence 765 356677765321 00 1000 0
Q ss_pred ---hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccc
Q 039839 105 ---ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPL 178 (825)
Q Consensus 105 ---er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l 178 (825)
........+|||||+||+|++ ++|||||||++||++. +..+.++++++. .|||+||||++.+.
T Consensus 156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~------~~~l~~~L~~~~----~tviiisHd~~~~~- 224 (556)
T PRK11819 156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES------VAWLEQFLHDYP----GTVVAVTHDRYFLD- 224 (556)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHH------HHHHHHHHHhCC----CeEEEEeCCHHHHH-
Confidence 001112344999999999999 9999999999999999 999999998862 49999999998774
Q ss_pred cccCcEEEEeCCeEE-EecCccc
Q 039839 179 EYLEPILREDIQKIW-DAVPKPQ 200 (825)
Q Consensus 179 ~~~drvlvl~~GkI~-~~g~~~e 200 (825)
..||++++|++|+++ ..|+.++
T Consensus 225 ~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 225 NVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred hhcCeEEEEeCCEEEEecCCHHH
Confidence 589999999999986 5666544
No 259
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=254.00 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=144.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.++++|++++|++. ..++++++++.+ ++|+.++|+||||||||||+++|+|+ .+|.+|+.
T Consensus 341 ~i~~~~vsf~y~~~-~~~il~~i~l~i--~~G~~~aIvG~sGsGKSTLl~ll~gl----~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTYPGK-EVPALRNINFKI--PAGKTVALVGRSGSGKSTIANLLTRF----YDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEecCCC-CCccccCceEEe--CCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCceEEECCEEhhhcCHH
Confidence 59999999999642 156999999999 99999999999999999999999999 56777751
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH-------------hhC-----------CC--hhhhhhhhhHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD-------------LEG-----------SD--SRERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld-------------~~g-----------~~--~~er~e~~~~~ErQRv~iAr 122 (825)
+..++|++|+. |+.+|+.++.. ..| .+ -.+.+.....+||||++|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24567877664 45677765311 001 10 01222334556999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|+. +||||||||++||++. ...+++.+.++.+ ++|+|+|||+++... .||+|+++++|+|.+.|+.+
T Consensus 494 all~~~~ililDEptsaLD~~t------~~~i~~~l~~~~~--~~tvI~VtHr~~~~~--~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTES------ERAIQAALDELQK--NRTSLVIAHRLSTIE--KADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHhCCCEEEEECccccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH--hCCEEEEEECCEEEEeCCHH
Confidence 999 9999999999999999 9999999999854 699999999998775 79999999999999999977
Q ss_pred cccCC
Q 039839 200 QTLKN 204 (825)
Q Consensus 200 e~l~~ 204 (825)
+.++.
T Consensus 564 ~l~~~ 568 (582)
T PRK11176 564 ELLAQ 568 (582)
T ss_pred HHHhC
Confidence 76543
No 260
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=2.4e-24 Score=224.13 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=129.1
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
..+|+++|+++.|+...-..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTL--HPGEVTALVGPSGSGKSTVVALLENFY----QPQGGQVLLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCcEEEECCCchHHcC
Confidence 45799999999996421135899999999 999999999999999999999999994 4555541
Q ss_pred ----cceeeEEcCCC-----ccchhHHHHHHhh-----------------------CCCh--hhhhhhhhHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC-----VGIEPFTIAMDLE-----------------------GSDS--RERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 ----q~~~G~~~~~~-----t~~enl~l~ld~~-----------------------g~~~--~er~e~~~~~ErQRv~iA 121 (825)
...+|++++.. ++.+|+.+..... |... .........+|+||++||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 13467776653 3344444321100 0000 000111233499999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
+|++ ++|||||||++||+.. +..+.+.++++.+ +.|+|+||||++.+. .||+++++++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~--~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAES------EQQVQQALYDWPE--RRTVLVIAHRLSTVE--RADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEECCHHHHH--hCCEEEEecCCcC
Confidence 9999 9999999999999999 9999999999864 589999999998775 5999999998874
No 261
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=250.49 Aligned_cols=174 Identities=13% Similarity=0.150 Sum_probs=134.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+ .+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSV--CRGEILGFAGLVGSGRTELMNCLFGVD----KRAGGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----cCCCCeEEECCEECCCCCH
Confidence 4799999998753 3799999999 999999999999999999999999994 4444441
Q ss_pred ----cceeeEEcCC---------CccchhHHHHHHhh--------CC-Chhh---------------------hhhhhhH
Q 039839 76 ----QTTKGIWIAK---------CVGIEPFTIAMDLE--------GS-DSRE---------------------RGEDDTT 112 (825)
Q Consensus 76 ----q~~~G~~~~~---------~t~~enl~l~ld~~--------g~-~~~e---------------------r~e~~~~ 112 (825)
...+||++|. .++.+|+.+..... +. .... .......
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 1246888775 24566655432110 10 0000 0011233
Q ss_pred HHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 113 FEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 113 ~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
+|||||+||+||+ +||||||||++||+.. +..++++|+++.++ |.|||+||||++.+. .+||+++++++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~-~~~d~i~~l~~ 484 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA------KAEIYKVMRQLADD-GKVILMVSSELPEII-TVCDRIAVFCE 484 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHH-hhCCEEEEEEC
Confidence 4999999999999 9999999999999999 99999999999865 999999999998773 58999999999
Q ss_pred CeEEEecCccc
Q 039839 190 QKIWDAVPKPQ 200 (825)
Q Consensus 190 GkI~~~g~~~e 200 (825)
|+|+..++..+
T Consensus 485 G~i~~~~~~~~ 495 (510)
T PRK09700 485 GRLTQILTNRD 495 (510)
T ss_pred CEEEEEecCcc
Confidence 99998876533
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=4.6e-24 Score=218.77 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=123.3
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+|+||||||||+++|+|+. .|.+|+.
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTL--AAGEALQVTGPNGSGKTTLLRILAGLS----PPLAGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccccHHh
Confidence 478999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHh------------hCCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecC
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDL------------EGSDS--RERGEDDTTFEKQSALFALAIA---DIVLINM 132 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~------------~g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDE 132 (825)
+..+|++++. .++.+|+.+.... .|... ..........||||++||+|++ ++|||||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 151 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2346676543 3456666553211 11110 0001112334999999999999 9999999
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 133 PtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
||++||++. +..+.+.+.++.++ |.|+|+||||....+ .+|++++++
T Consensus 152 Pt~~LD~~~------~~~l~~~l~~~~~~-g~tiii~sH~~~~~~-~~~~~~~~~ 198 (201)
T cd03231 152 PTTALDKAG------VARFAEAMAGHCAR-GGMVVLTTHQDLGLS-EAGARELDL 198 (201)
T ss_pred CCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCchhhh-hccceeEec
Confidence 999999999 99999999998765 899999999996553 489999876
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.91 E-value=6.3e-24 Score=216.99 Aligned_cols=158 Identities=9% Similarity=0.042 Sum_probs=121.3
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTL--NAGEALQVTGPNGIGKTTLLRILAGLL----RPDSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccchHHh
Confidence 478999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhh----------------hhhhHHHHHHHHHHHHHH---HHhee
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERG----------------EDDTTFEKQSALFALAIA---DIVLI 130 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~----------------e~~~~~ErQRv~iArALa---~VLLL 130 (825)
+..+|++++. .++.+|+.+.....+....... .....+|+||++||+|++ ++|||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 151 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWIL 151 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1345676543 4566777665443321110011 111223999999999999 99999
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEE
Q 039839 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILR 186 (825)
Q Consensus 131 DEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlv 186 (825)
||||++||... +..+.+.+.++.++ |.|+|++|||.... .|++++.
T Consensus 152 DEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~---~~~~~~~ 197 (198)
T TIGR01189 152 DEPTTALDKAG------VALLAGLLRAHLAR-GGIVLLTTHQDLGL---VEARELR 197 (198)
T ss_pred eCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEcccccc---cceEEee
Confidence 99999999999 99999999998765 89999999999655 3676654
No 264
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.91 E-value=2.4e-24 Score=258.44 Aligned_cols=176 Identities=19% Similarity=0.204 Sum_probs=142.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+... +.+++++++.+ ++|+.++|+||||||||||+|+|+|+ ..|.+|+.
T Consensus 451 ~I~~~nvsf~Y~~~~-~~vL~~isl~i--~~Ge~vaIvG~sGsGKSTLlklL~gl----~~p~~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG-PLILDDVSLQI--EPGEFVAIVGPSGSGKSTLLRLLLGF----ETPESGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred eEEEEEEEEEcCCCC-ccceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCEEEECCEEcCcCCHH
Confidence 589999999995422 57999999999 99999999999999999999999999 66777761
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH-----------hhCCCh-------------hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD-----------LEGSDS-------------RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld-----------~~g~~~-------------~er~e~~~~~ErQRv~iArAL 124 (825)
+..+|+++|+. |+.+|+.+... ..|... .+.+.....+||||++||||+
T Consensus 524 ~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred HHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 34678887764 44777766311 111110 122233455699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||++. .+.+++.++++ ++|+|+|||+++... .||+|++|++|+|++.|+.+++
T Consensus 604 l~~p~iLiLDEpTS~LD~~t------e~~i~~~L~~~----~~T~IiItHr~~~i~--~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRT------QAIVSESLERL----KVTRIVIAHRLSTIR--NADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred hcCCCEEEEeCCccCCCHHH------HHHHHHHHHHh----CCeEEEEecChHHHH--cCCEEEEEECCEEEEECCHHHH
Confidence 9 9999999999999999 99999998876 479999999998775 7999999999999999998776
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
++
T Consensus 672 l~ 673 (686)
T TIGR03797 672 MA 673 (686)
T ss_pred Hh
Confidence 54
No 265
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-24 Score=245.26 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=143.0
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
++.+|+++.|+.+ +..+.++++++ ++|+.++|+|+||||||||+++|+|+ ..|+.|+.
T Consensus 321 i~~~~l~~~y~~g--~~~l~~l~~t~--~~g~~talvG~SGaGKSTLl~lL~G~----~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 321 ISLENLSFRYPDG--KPALSDLNLTI--KAGQLTALVGASGAGKSTLLNLLLGF----LAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred eeecceEEecCCC--CcccCCceeEe--cCCcEEEEECCCCCCHHHHHHHHhCc----CCCCCceEEECCccccccCHHH
Confidence 4455999999764 47899999999 99999999999999999999999999 55666661
Q ss_pred -cceeeEEcCCC-----ccchhHHHHHH------------hh----------CCC--hhhhhhhhhHHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAMD------------LE----------GSD--SRERGEDDTTFEKQSALFALAIA 125 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~ld------------~~----------g~~--~~er~e~~~~~ErQRv~iArALa 125 (825)
+.+++++.|++ |..+|+.+.-. .. |.+ -.+.+.....+|+||+++|||+.
T Consensus 393 ~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 393 WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence 23455555543 44677755321 11 222 12334445666999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
+|+|+||||++||.|. ...|.+.|.++++ ++|+|+|||++..+. .+|+|++|++|++++.|..++..
T Consensus 473 ~~~~l~llDEpTA~LD~et------E~~i~~~l~~l~~--~ktvl~itHrl~~~~--~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 473 SPASLLLLDEPTAHLDAET------EQIILQALQELAK--QKTVLVITHRLEDAA--DADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred CCCCEEEecCCccCCCHhH------HHHHHHHHHHHHh--CCeEEEEEcChHHHh--cCCEEEEecCCceeccCCHHHHh
Confidence 8999999999999999 9999999999986 599999999997775 69999999999999999988775
Q ss_pred CCcc
Q 039839 203 KNTP 206 (825)
Q Consensus 203 ~~~~ 206 (825)
++..
T Consensus 543 ~~~~ 546 (559)
T COG4988 543 EKQG 546 (559)
T ss_pred hcCc
Confidence 5443
No 266
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=4.6e-24 Score=221.72 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=124.2
Q ss_pred eEEEEEeEEEecCc---c-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------
Q 039839 9 CMQLIDGNGEFNVD---G-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~---~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------- 75 (825)
||+++|+++.|+.. . -..+++++++.+ .+|++++|+|||||||||||++|+|+.. |..|+.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~i~~~~~g~~~ 74 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTV--NAGECVALSGPSGAGKSTLLKSLYANYL----PDSGRILVRHEGAWV 74 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEEecCCCcc
Confidence 48999999999631 0 135899999999 9999999999999999999999999954 333320
Q ss_pred --------------cceeeEEcCCC------ccchhHHHHHHhhCCChhh---h------------------hhhhhHHH
Q 039839 76 --------------QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRE---R------------------GEDDTTFE 114 (825)
Q Consensus 76 --------------q~~~G~~~~~~------t~~enl~l~ld~~g~~~~e---r------------------~e~~~~~E 114 (825)
...+||+++.. ++.+++.+.....+..... + .......|
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred chhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 12467876653 3445555433222222111 0 11122339
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
+||++||+|++ ++|||||||++||++. +..+.+.++++.++ |+|+|+||||++.+. .+||+++.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vsH~~~~~~-~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAAN------RQVVVELIAEAKAR-GAALIGIFHDEEVRE-LVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-HhcceeEec
Confidence 99999999999 9999999999999999 99999999999765 899999999997763 479998765
No 267
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=232.02 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=138.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccccc-CCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFRE-MDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~-~~~~~G~~----------- 75 (825)
.+|.++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+..+. ..+.+|+.
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i--~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDI--PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 47999999999976 56999999999 999999999999999999999999985210 01334431
Q ss_pred ------cceeeEEcCCC-----ccchhHHHHHHhhC------------CCh-h---hh---------------------h
Q 039839 76 ------QTTKGIWIAKC-----VGIEPFTIAMDLEG------------SDS-R---ER---------------------G 107 (825)
Q Consensus 76 ------q~~~G~~~~~~-----t~~enl~l~ld~~g------------~~~-~---er---------------------~ 107 (825)
+..+||+++.. ++.+|+.+.....+ ... . +. .
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 198 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA 198 (305)
T ss_pred ccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc
Confidence 13467876653 45667766432211 110 0 00 0
Q ss_pred hhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 108 EDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 108 e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
.....+|+||++||+||+ +||||||||+|||+.. +..+.++|+++.+ +.|+|+||||++.+. .+||++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~i~-~~~d~i 269 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA------TSKIEDLIEELAE--EYTVVVVTHNMQQAA-RISDQT 269 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEEcCHHHHH-HhcCEE
Confidence 011233999999999999 9999999999999999 9999999999976 479999999998774 589996
Q ss_pred -EEEeCCeEEEecCcccccC
Q 039839 185 -LREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 185 -lvl~~GkI~~~g~~~e~l~ 203 (825)
+++++|+++..|++++++.
T Consensus 270 ~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred EEEecCCEEEEeCCHHHHHh
Confidence 5679999999998766543
No 268
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.91 E-value=3.3e-24 Score=258.24 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=142.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+... +.+++++++.+ ++|+.++|+||||||||||+|+|+|+ .+|.+|+.
T Consensus 477 ~I~~~~vsf~y~~~~-~~vL~~isl~i--~~Ge~vaIvG~sGsGKSTLlklL~gl----~~p~~G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 477 YVELRNITFGYSPLE-PPLIENFSLTL--QPGQRVALVGGSGSGKSTIAKLVAGL----YQPWSGEILFDGIPREEIPRE 549 (710)
T ss_pred eEEEEEEEEecCCCC-CCcccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCcEEEECCEeHHHCCHH
Confidence 589999999997522 57999999999 99999999999999999999999999 66777762
Q ss_pred --cceeeEEcCCC-----ccchhHHHHH------------HhhCC-----------C--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAM------------DLEGS-----------D--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~l------------d~~g~-----------~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|+. ++.+|+.+.. +..|. + -.+.+.....+||||++||||
T Consensus 550 ~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred HHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 35678887764 4567776531 00011 1 012233345569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||.+. .+.+++.+++ . ++|+|+|||+++... .||+|++|++|+|++.|+.++
T Consensus 630 ll~~p~iliLDEptS~LD~~t------e~~i~~~l~~---~-~~T~IiitHrl~~i~--~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPET------EKIIDDNLRR---R-GCTCIIVAHRLSTIR--DCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HhhCCCEEEEECccccCCHHH------HHHHHHHHHh---c-CCEEEEEecCHHHHH--hCCEEEEEeCCEEEEecCHHH
Confidence 99 9999999999999999 9999999876 2 799999999998776 799999999999999999887
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 664
No 269
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=9.1e-24 Score=224.60 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=135.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
..|+++|+++.|+... ..+++++++.+ .+|++++|+|+||||||||+++|+|+. .+.+|+.
T Consensus 18 ~~i~~~~l~~~~~~~~-~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 18 GEIKIHDLCVRYENNL-KPVLKHVKAYI--KPGQKVGICGRTGSGKSSLSLAFFRMV----DIFDGKIVIDGIDISKLPL 90 (257)
T ss_pred ceEEEEEEEEEeCCCC-CcceeEEEEEE--cCCCEEEEECCCCCCHHHHHHHHHccc----CCCCCeEEECCEEhhhCCH
Confidence 3699999999996521 35899999999 999999999999999999999999994 4555641
Q ss_pred ---cceeeEEcCCCcc-----chhHHHH-----------HHhhCCCh-------------hhhhhhhhHHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKCVG-----IEPFTIA-----------MDLEGSDS-------------RERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 ---q~~~G~~~~~~t~-----~enl~l~-----------ld~~g~~~-------------~er~e~~~~~ErQRv~iArA 123 (825)
...+|++++.... .+|+... ++..+... ..........|+||++||||
T Consensus 91 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 91 HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred HHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 2346787765432 2222110 00001100 00011234459999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. ...+++++.++. + +.|+|++||+++... .||++++|++|+++..|++++
T Consensus 171 l~~~p~llllDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sh~~~~~~--~~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 171 FVRKSSILIMDEATASIDMAT------ENILQKVVMTAF-A-DRTVVTIAHRVSTIL--DADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHhc-C-CCEEEEEecChHHHH--hCCEEEEEECCEEEEeCCHHH
Confidence 99 9999999999999999 999999999874 3 799999999998875 499999999999999887665
Q ss_pred cc
Q 039839 201 TL 202 (825)
Q Consensus 201 ~l 202 (825)
+.
T Consensus 241 ~~ 242 (257)
T cd03288 241 LL 242 (257)
T ss_pred HH
Confidence 43
No 270
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=4.4e-24 Score=218.96 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=127.0
Q ss_pred EEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc--ceeeEEcCC
Q 039839 10 MQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ--TTKGIWIAK 85 (825)
Q Consensus 10 Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q--~~~G~~~~~ 85 (825)
|+++|+++.|+... ...+++++++.+ .+|++++|+|||||||||||++|+|+ ..+.+|+.. ..+||+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i--~~G~~~~i~G~nG~GKSTLl~~i~G~----~~~~~G~i~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEV--PKGELVAIVGPVGSGKSSLLSALLGE----LEKLSGSVSVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhCc----CCCCCCeEEEcCEEEEEecC
Confidence 47899999997521 025899999999 99999999999999999999999999 567778642 246787665
Q ss_pred C-----ccchhHHHHHHhh-----------CCCh-------------hhhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 86 C-----VGIEPFTIAMDLE-----------GSDS-------------RERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 86 ~-----t~~enl~l~ld~~-----------g~~~-------------~er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
. ++.+|+.+..... +... ..........||||++||||++ +++|+|||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3 3445554421110 0000 0011223445999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHH-HHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 134 CHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~el-L~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
|++||++. .+.+++. +.++.++ |.|||++||+++.+. . ||++++|++|+
T Consensus 155 ~~~LD~~~------~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~-~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHV------GRHIFENCILGLLLN-NKTRILVTHQLQLLP-H-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHH------HHHHHHHHHHHhccC-CCEEEEEeCCHHHHh-h-CCEEEEEeCCC
Confidence 99999998 8999984 5666555 899999999998885 3 99999999884
No 271
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=5.3e-24 Score=251.36 Aligned_cols=177 Identities=18% Similarity=0.153 Sum_probs=143.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|+.. .++++++++.+ ++|+.++|+|+||||||||+++|+|+ ++|..|+.
T Consensus 340 ~i~~~~v~f~y~~~--~~il~~i~l~i--~~Ge~iaIvG~SGsGKSTLl~lL~gl----~~p~~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAYRDD--NLVLQNINLSV--PSRGFVALVGHTGSGKSTLASLLMGY----YPLTEGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEeCCC--CceeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCceEEECCEEhhhCCHH
Confidence 49999999999642 46999999999 99999999999999999999999999 66777761
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH-----------hhCC-----------Ch--hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD-----------LEGS-----------DS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld-----------~~g~-----------~~--~er~e~~~~~ErQRv~iArAL 124 (825)
+..++++.|+. |+.+|+.+.-+ ..|. +. .+.+.....+||||++||||+
T Consensus 412 ~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL 491 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL 491 (592)
T ss_pred HHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 35678887764 44677766421 1111 10 122233455699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +||||||||++||++. .+.+.+.++++.+ ++|+|+|||+++... .||+|++|++|+|++.|+.++.
T Consensus 492 l~~~~illlDEpts~LD~~t------~~~i~~~l~~~~~--~~tvIivtHr~~~l~--~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 492 VQTPQILILDEATANIDSGT------EQAIQQALAAVRE--HTTLVVIAHRLSTIV--EADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH--hCCEEEEEECCEEEEEcCHHHH
Confidence 9 9999999999999999 9999999999864 689999999997775 7999999999999999998876
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
++
T Consensus 562 ~~ 563 (592)
T PRK10790 562 LA 563 (592)
T ss_pred Hh
Confidence 54
No 272
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=4.5e-24 Score=215.48 Aligned_cols=142 Identities=18% Similarity=0.026 Sum_probs=117.4
Q ss_pred EEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc---ceeeEEcCCCccc
Q 039839 13 IDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ---TTKGIWIAKCVGI 89 (825)
Q Consensus 13 ~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q---~~~G~~~~~~t~~ 89 (825)
.|+++.|+. ..++.++ +.+ .+|++++|+||||||||||+|+|+|+ ..|.+|+.. ..+++.++...
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~~i~~~~q~~~-- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVV--KEGEVIGIVGPNGTGKTTAVKILAGQ----LIPNGDNDEWDGITPVYKPQYID-- 71 (177)
T ss_pred CCeEEEECC---EEEEccC-cEE--CCCCEEEEECCCCChHHHHHHHHHcC----CCCCCcEEEECCEEEEEEcccCC--
Confidence 478999976 4566664 788 99999999999999999999999999 567778732 12455444321
Q ss_pred hhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEE
Q 039839 90 EPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL 166 (825)
Q Consensus 90 enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TI 166 (825)
....||||++||||++ +++||||||++||++. +..+.+.+.++.++.+.|+
T Consensus 72 --------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~------~~~l~~~l~~~~~~~~~ti 125 (177)
T cd03222 72 --------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ------RLNAARAIRRLSEEGKKTA 125 (177)
T ss_pred --------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHcCCCEE
Confidence 5778999999999999 9999999999999999 9999999999876534899
Q ss_pred EEEecCCCCccccccCcEEEEeCCeEE
Q 039839 167 LFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 167 L~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|+||||++.+. ..||++++++++-.+
T Consensus 126 iivsH~~~~~~-~~~d~i~~l~~~~~~ 151 (177)
T cd03222 126 LVVEHDLAVLD-YLSDRIHVFEGEPGV 151 (177)
T ss_pred EEEECCHHHHH-HhCCEEEEEcCCCcc
Confidence 99999997764 579999999876544
No 273
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=4.7e-24 Score=251.56 Aligned_cols=177 Identities=13% Similarity=0.101 Sum_probs=142.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|..+ +.+++++++.+ ++|+.++|+||||||||||+++|+|+ + |.+|+.
T Consensus 349 ~i~~~~vsf~~~~~--~~vL~~i~l~i--~~G~~vaIvG~SGsGKSTL~~lL~g~----~-p~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSPDG--KTLAGPLNFTL--PAGQRIALVGPSGAGKTSLLNALLGF----L-PYQGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEeccCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----C-CCCcEEEECCEecccCCHH
Confidence 48999999766432 56899999999 99999999999999999999999999 5 556651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH------------hh-----------CCC--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD------------LE-----------GSD--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld------------~~-----------g~~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|++.|++ |+.+|+.++.. .. |.+ -.+++.....+||||++||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred HHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 34678887764 55777776411 00 111 112333445569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ +||||||||++||.+. .+.+.+.+.++.+ ++|+|+|||+++... .||+|+++++|+|++.|+.++
T Consensus 500 ll~~~~IliLDE~TSaLD~~t------e~~i~~~l~~~~~--~~TvIiItHrl~~i~--~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHS------EQLVMQALNAASR--RQTTLMVTHQLEDLA--QWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEecChHHHH--hCCEEEEEeCCeEeecCCHHH
Confidence 99 9999999999999999 9999999998863 799999999997775 799999999999999998777
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
.++.
T Consensus 570 L~~~ 573 (588)
T PRK11174 570 LSQA 573 (588)
T ss_pred HHhc
Confidence 6543
No 274
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-24 Score=239.81 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=140.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.++++|++++|.+.. .++++++|+.+ ..||.++|+|++|||||||++.|.|. .+|.+|+.
T Consensus 336 ~l~~~~vsF~y~~~~-~~~L~~~~l~l--~~GEkvAIlG~SGsGKSTllqLl~~~----~~~~~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTYPGQQ-TKALKNFNLTL--AQGEKVAILGRSGSGKSTLLQLLAGA----WDPQQGSITLNGVEIASLDEQ 408 (573)
T ss_pred eeeeccceeecCCCc-cchhhccceee--cCCCeEEEECCCCCCHHHHHHHHHhc----cCCCCCeeeECCcChhhCChh
Confidence 689999999997642 57999999999 99999999999999999999999998 66777762
Q ss_pred --cceeeEEcCCC-----ccchhHHHH------------HHhhCC-------------ChhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIA------------MDLEGS-------------DSRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~------------ld~~g~-------------~~~er~e~~~~~ErQRv~iArA 123 (825)
..+++++.|.. |..+|+.+. ++..|. .-.|.++....+|+||++|||+
T Consensus 409 ~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 409 ALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 11334444432 334554442 111111 1123344445569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|. +++||||||.|||++. .+.|++.+.+-.+ |+|+|||||++..+. .||+|++|++|+|+++|++.+
T Consensus 489 LL~dapl~lLDEPTegLD~~T------E~~vL~ll~~~~~--~kTll~vTHrL~~le--~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPIT------ERQVLALLFEHAE--GKTLLMVTHRLRGLE--RMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHcCCCeEEecCCcccCChhh------HHHHHHHHHHHhc--CCeEEEEecccccHh--hcCEEEEEECCeeeecCCHHh
Confidence 99 9999999999999999 9999999988765 899999999997665 799999999999999999888
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
.+.
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 765
No 275
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=5.7e-24 Score=257.93 Aligned_cols=181 Identities=18% Similarity=0.135 Sum_probs=149.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
.++++|++++|..++-..+++++++.+ +.|+.|+|+|||||||||++++|.++ .+|..|.
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i--~~G~~valVG~SGsGKST~i~LL~Rf----ydP~~G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKI--PSGQTVALVGPSGSGKSTLIQLLARF----YDPTSGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEe--CCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCceEEEcCccchhcchH
Confidence 599999999998765457999999999 99999999999999999999999999 7788887
Q ss_pred -ccceeeEEcCCC-----ccchhHHHHHHhh-------------------------CCChhhhhhhhhHHHHHHHHHHHH
Q 039839 75 -SQTTKGIWIAKC-----VGIEPFTIAMDLE-------------------------GSDSRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 75 -~q~~~G~~~~~~-----t~~enl~l~ld~~-------------------------g~~~~er~e~~~~~ErQRv~iArA 123 (825)
.+.++|++.|.+ ++.+|+.++.... .+.-.+++-....+||||++||||
T Consensus 424 ~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred HHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 145788887764 4467776643110 011122222334459999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ +||||||||++||++. .+.|.+.|.+..+ |.|.|+|+|++.... .+|+++++++|+|++.|++++
T Consensus 504 lv~~P~ILLLDEaTSaLD~~s------e~~Vq~ALd~~~~--grTTivVaHRLStIr--naD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAES------ERVVQEALDKASK--GRTTIVVAHRLSTIR--NADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred HHhCCCEEEecCcccccCHHH------HHHHHHHHHHhhc--CCeEEEEeeehhhhh--ccCEEEEEECCEEEEecCHHH
Confidence 99 9999999999999999 9999999988764 789999999998886 799999999999999999999
Q ss_pred ccCCc
Q 039839 201 TLKNT 205 (825)
Q Consensus 201 ~l~~~ 205 (825)
++...
T Consensus 574 Li~~~ 578 (1228)
T KOG0055|consen 574 LIALG 578 (1228)
T ss_pred HHhcc
Confidence 87654
No 276
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=8.7e-24 Score=218.90 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=149.8
Q ss_pred ceEEEEEeEEEecCc---------------------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc
Q 039839 8 CCMQLIDGNGEFNVD---------------------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR 66 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~---------------------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~ 66 (825)
++|++.|+++.|.-. ....+|++|+|.+ .+||.+||||+||||||||||+|+|.
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i--~~Ge~vGiiG~NGaGKSTLlkliaGi--- 76 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEI--YKGERVGIIGHNGAGKSTLLKLIAGI--- 76 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEE--eCCCEEEEECCCCCcHHHHHHHHhCc---
Confidence 368999999987321 1234799999999 99999999999999999999999999
Q ss_pred cCCcCCCcccc--eee------E-EcCCCccchhHHHHHHhhCCChhhhhhhhh---HH-----------------HHHH
Q 039839 67 EMDAFRGRSQT--TKG------I-WIAKCVGIEPFTIAMDLEGSDSRERGEDDT---TF-----------------EKQS 117 (825)
Q Consensus 67 ~~~~~~G~~q~--~~G------~-~~~~~t~~enl~l~ld~~g~~~~er~e~~~---~~-----------------ErQR 117 (825)
+.|++|+... ++. . +-+..|+++|+.+...+.|...++..+... +| |+-|
T Consensus 77 -~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aR 155 (249)
T COG1134 77 -YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYAR 155 (249)
T ss_pred -cCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHH
Confidence 6788887321 111 1 134578899999999999988766544332 22 9999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
++||.|+. ||||+||+.+--|..- ++.-.+.+.++.++ +.|+|+||||++.+. ++||+++++++|+|..
T Consensus 156 LaFsia~~~~pdILllDEvlavGD~~F------~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~-~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 156 LAFSVATHVEPDILLLDEVLAVGDAAF------QEKCLERLNELVEK-NKTIVLVSHDLGAIK-QYCDRAIWLEHGQIRM 227 (249)
T ss_pred HHHhhhhhcCCCEEEEehhhhcCCHHH------HHHHHHHHHHHHHc-CCEEEEEECCHHHHH-HhcCeeEEEeCCEEEE
Confidence 99999999 9999999999999877 99999999999776 799999999998874 6999999999999999
Q ss_pred ecCccccc
Q 039839 195 AVPKPQTL 202 (825)
Q Consensus 195 ~g~~~e~l 202 (825)
.|+++++.
T Consensus 228 ~G~~~~vi 235 (249)
T COG1134 228 EGSPEEVI 235 (249)
T ss_pred cCCHHHHH
Confidence 99988764
No 277
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.90 E-value=7.3e-24 Score=272.04 Aligned_cols=178 Identities=11% Similarity=0.113 Sum_probs=145.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
..|+++|++|.|+.+. +.+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 927 ~~L~I~nLsK~y~~~~-k~aL~~lsl~I--~~Gei~aLLG~NGAGKSTLLkiLaGLl----~PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSG-RPAVDRLNITF--YENQITAFLGHNGAGKTTTLSILTGLL----PPTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCCC-ceEEEeeEEEE--cCCcEEEEECCCCChHHHHHHHHhcCC----CCCceEEEECCEECcchHH
Confidence 4799999999995211 56999999999 999999999999999999999999994 4555541
Q ss_pred --cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH--
Q 039839 76 --QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA-- 125 (825)
Q Consensus 76 --q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa-- 125 (825)
+..+|+++|. .++.+++.+.....|....+..+. ...+||||++||+||+
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 2347887664 467888888766655443221111 1223999999999999
Q ss_pred -HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 -~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+||||||||+|||+.. ++.++++|+++. + |+|||++|||++.+. .+|||+++|++|++...|++..+
T Consensus 1080 PkVLLLDEPTSGLDp~s------r~~l~~lL~~l~-~-g~TIIltTHdmdea~-~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1080 AKVVVLDEPTSGVDPYS------RRSIWDLLLKYR-S-GRTIIMSTHHMDEAD-LLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred CCEEEEECCCcCCCHHH------HHHHHHHHHHHh-C-CCEEEEEECCHHHHH-HhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999 999999999994 4 899999999998874 57999999999999999986654
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.6e-24 Score=248.23 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=134.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~ 83 (825)
.+|+++|+++.|+. +.+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. +..+||++
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~i~G~----~~p~~G~i~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLL--EAGERLAIIGENGVGKTTLLRTLVGE----LEPDSGTVKWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCeEEEECCceEEEEEc
Confidence 37999999999976 46899999999 99999999999999999999999999 55667763 34578887
Q ss_pred CCC--------ccchhHHHHH-------------HhhCCCh---hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCC
Q 039839 84 AKC--------VGIEPFTIAM-------------DLEGSDS---RERGEDDTTFEKQSALFALAIA---DIVLINMWCHD 136 (825)
Q Consensus 84 ~~~--------t~~enl~l~l-------------d~~g~~~---~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsg 136 (825)
|.. ++.+++.+.. ...|... .........+||||++||+|++ ++|||||||++
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 653 2344443211 0011100 0011112334999999999999 99999999999
Q ss_pred CccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE-EecCcccc
Q 039839 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW-DAVPKPQT 201 (825)
Q Consensus 137 LD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~-~~g~~~e~ 201 (825)
||+.. +..+.+.+.++ +.|||+||||++.+. .+||+++++++|+++ ..|++.++
T Consensus 469 LD~~~------~~~l~~~l~~~----~~tvi~vsHd~~~~~-~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 469 MDMES------IESLNMALEKY----EGTLIFVSHDREFVS-SLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred CCHHH------HHHHHHHHHHC----CCEEEEEeCCHHHHH-HhCCEEEEEECCeEEEcCCCHHHH
Confidence 99999 99999999886 349999999998773 579999999999997 66765544
No 279
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.90 E-value=6.2e-24 Score=255.26 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=143.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+... +.+++++++.+ .+|+.++|+||||||||||+|+|+|+ .+|.+|+.
T Consensus 463 ~I~~~~vsf~Y~~~~-~~vL~~i~l~i--~~G~~iaIvG~sGsGKSTLlklL~gl----~~p~~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE-TPALDNVSLTI--RPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPA 535 (694)
T ss_pred eEEEEEEEEEeCCCC-ccceeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCceEEECCEEhhhCCHH
Confidence 589999999996421 56999999999 99999999999999999999999999 66777751
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH------------hhC-----------CC--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD------------LEG-----------SD--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld------------~~g-----------~~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|.. |+.+|+.+... ..| .+ -.+.+.....+||||++||||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred HHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 34678887764 45677765311 001 11 012333445569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. .+.+.+.+.++.+ ++|+|+|||+++... .||+|++|++|+|++.|+.++
T Consensus 616 ll~~p~iliLDE~Ts~LD~~t------e~~i~~~l~~~~~--~~T~iiItHrl~~~~--~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRS------EERFKDRLKRWLA--GKTLVLVTHRTSLLD--LVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHHH--hCCEEEEEeCCEEEeeCCHHH
Confidence 99 9999999999999999 9999999999864 799999999998765 799999999999999998776
Q ss_pred cc
Q 039839 201 TL 202 (825)
Q Consensus 201 ~l 202 (825)
++
T Consensus 686 Ll 687 (694)
T TIGR03375 686 VL 687 (694)
T ss_pred HH
Confidence 54
No 280
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=218.11 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=130.6
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc------CCCc------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA------FRGR------ 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~------~~G~------ 74 (825)
.++|+++|++..|++ +.++.+++..+ ..||-++|+|||||||||||++++|..++.-+. ..|+
T Consensus 29 ~~li~l~~v~v~r~g---k~iL~~isW~V--~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~e 103 (257)
T COG1119 29 EPLIELKNVSVRRNG---KKILGDLSWQV--NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103 (257)
T ss_pred cceEEecceEEEECC---Eeeccccceee--cCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHH
Confidence 357999999999998 78999999999 999999999999999999999999986542110 0111
Q ss_pred ccceeeEEcC-------C-CccchhHH-----------------------HHHHhhCCChh--hhhhhhhHHHHHHHHHH
Q 039839 75 SQTTKGIWIA-------K-CVGIEPFT-----------------------IAMDLEGSDSR--ERGEDDTTFEKQSALFA 121 (825)
Q Consensus 75 ~q~~~G~~~~-------~-~t~~enl~-----------------------l~ld~~g~~~~--er~e~~~~~ErQRv~iA 121 (825)
.+.++|++-+ . .++.+-+. ..++..|.... ..-......|||||+||
T Consensus 104 lrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLia 183 (257)
T COG1119 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIA 183 (257)
T ss_pred HHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHH
Confidence 1344555411 1 11111111 01111111110 00111223399999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCC-CCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~-~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|||+ ++||||||++|||..+ +..+.+.+.++... .+.++|||||..++++ ...++++.+++|+++..|.
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~------re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~-~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIA------REQLLNRLEELAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHhcCCCEEEecCccccCChHH------HHHHHHHHHHHhcCCCCceEEEEEcchhhcc-cccceEEEeeCCceeeccc
Confidence 9999 9999999999999999 99999999998853 4789999999997775 4789999999999998873
No 281
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.90 E-value=6.6e-24 Score=255.56 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=142.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+.. +++++++++.+ .+|+.++|+||||||||||+++|+|+ ..|.+|+.
T Consensus 473 ~I~~~~vsf~y~~~--~~iL~~isl~i--~~G~~vaIvG~SGsGKSTLlklL~gl----~~p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYGYG--SNILSDISLTI--KMNSKTTIVGMSGSGKSTLAKLLVGF----FQARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcCCC--CcceeceeEEE--CCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCcEEEECCEEHHHcCHH
Confidence 48999999999642 57999999999 99999999999999999999999999 66777761
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHh-------------hCC-----------C--hhhhhhhhhHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDL-------------EGS-----------D--SRERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~-------------~g~-----------~--~~er~e~~~~~ErQRv~iAr 122 (825)
+..+|+++|+. |+.+|+.+..+. .|. + -.+.+.....+||||++|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 34678887764 456777664110 011 0 01222333455999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|++ ++|||||||++||.+. .+.+++.+.++ + ++|+|+|||+++... .||+|++|++|++++.|+.+
T Consensus 625 all~~p~iliLDE~Ts~LD~~t------e~~i~~~L~~~--~-~~T~IiitHr~~~~~--~~D~i~~l~~G~i~~~G~~~ 693 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTIT------EKKIVNNLLNL--Q-DKTIIFVAHRLSVAK--QSDKIIVLDHGKIIEQGSHD 693 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHh--c-CCEEEEEecchHHHH--cCCEEEEEECCEEEEECCHH
Confidence 999 9999999999999999 99999999885 3 789999999998765 79999999999999999987
Q ss_pred cccC
Q 039839 200 QTLK 203 (825)
Q Consensus 200 e~l~ 203 (825)
+++.
T Consensus 694 ~L~~ 697 (708)
T TIGR01193 694 ELLD 697 (708)
T ss_pred HHHh
Confidence 7654
No 282
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=1.1e-23 Score=246.83 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=136.3
Q ss_pred ceEEEEEeEEEec-CccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE
Q 039839 8 CCMQLIDGNGEFN-VDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW 82 (825)
Q Consensus 8 ~~Lel~nlsk~y~-~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~ 82 (825)
+||+++|++++|+ . +.+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|.. ...+||+
T Consensus 3 ~~i~~~nls~~~~~~---~~il~~is~~i--~~Ge~~~liG~NGsGKSTLl~~i~G~----~~p~~G~i~~~~~~~i~~v 73 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK---KEILKDISLSF--FPGAKIGVLGLNGAGKSTLLRIMAGV----DKEFNGEARPAPGIKVGYL 73 (552)
T ss_pred EEEEEeeEEEecCCC---CeeecCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEecCCCEEEEE
Confidence 4799999999997 4 56899999999 99999999999999999999999999 45667763 2457888
Q ss_pred cCCC------ccchhHHHHHHh--------------hCCChh--------------------------------------
Q 039839 83 IAKC------VGIEPFTIAMDL--------------EGSDSR-------------------------------------- 104 (825)
Q Consensus 83 ~~~~------t~~enl~l~ld~--------------~g~~~~-------------------------------------- 104 (825)
+|.. ++.+|+.+++.. .+....
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 7653 556777653211 000000
Q ss_pred ---hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccc
Q 039839 105 ---ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPL 178 (825)
Q Consensus 105 ---er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l 178 (825)
........+||||++||+|++ ++|||||||++||++. +..+.++|.++ +.|||+||||++.+.
T Consensus 154 ~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~------~~~l~~~L~~~----~~tvIiisHd~~~~~- 222 (552)
T TIGR03719 154 PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES------VAWLEQHLQEY----PGTVVAVTHDRYFLD- 222 (552)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHH------HHHHHHHHHhC----CCeEEEEeCCHHHHH-
Confidence 001112344999999999999 9999999999999999 99999998876 249999999998774
Q ss_pred cccCcEEEEeCCeEE-EecCcccc
Q 039839 179 EYLEPILREDIQKIW-DAVPKPQT 201 (825)
Q Consensus 179 ~~~drvlvl~~GkI~-~~g~~~e~ 201 (825)
.+||+++++++|+++ ..|+..+.
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHH
Confidence 579999999999976 56765543
No 283
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.1e-23 Score=234.45 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=144.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
.|+++|+++.|+.+ +++++++++.+ ++|+-|||+|+|||||||+||+|+++ .+ .+|+
T Consensus 351 ~I~F~dV~f~y~~k--~~iL~gvsf~I--~kGekVaIvG~nGsGKSTilr~LlrF----~d-~sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK--RKVLKGVSFTI--PKGEKVAIVGSNGSGKSTILRLLLRF----FD-YSGSILIDGQDIKEVSLE 421 (591)
T ss_pred cEEEEeeEEEeCCC--CceecceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHH----hc-cCCcEEECCeeHhhhChH
Confidence 59999999999873 56999999999 99999999999999999999999998 44 5565
Q ss_pred -ccceeeEEcCCCc-----cchhHHHH------------HHhhCCC-------------hhhhhhhhhHHHHHHHHHHHH
Q 039839 75 -SQTTKGIWIAKCV-----GIEPFTIA------------MDLEGSD-------------SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 75 -~q~~~G~~~~~~t-----~~enl~l~------------ld~~g~~-------------~~er~e~~~~~ErQRv~iArA 123 (825)
.+..+|+++|... +..|+.++ ....|+. -.+++..+..+|||||+||||
T Consensus 422 SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred HhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence 2467899988753 34444432 1111111 134455555669999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+. +|+++||||+.||.+. ...+++.+++... ++|+|+|-|+++.+. .||+|+++++|++...|+..+
T Consensus 502 ~lKda~Il~~DEaTS~LD~~T------E~~i~~~i~~~~~--~rTvI~IvH~l~ll~--~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSET------EREILDMIMDVMS--GRTVIMIVHRLDLLK--DFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred HhcCCCeEEecCcccccchhh------HHHHHHHHHHhcC--CCeEEEEEecchhHh--cCCEEEEEECCeeEEeccHHH
Confidence 99 9999999999999999 9999999999543 899999999999987 799999999999999999888
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
.+.
T Consensus 572 ll~ 574 (591)
T KOG0057|consen 572 LLA 574 (591)
T ss_pred Hhh
Confidence 776
No 284
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.7e-23 Score=214.22 Aligned_cols=158 Identities=9% Similarity=0.037 Sum_probs=121.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|.+|+
T Consensus 1 ml~~~~l~~~~~~---~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 1 MLDVIELDFDYHD---QPLLQQISFHL--PAGGLLHLKGSNGAGKTTLLKLIAGLL----NPEKGEILFERQSIKKDLCT 71 (200)
T ss_pred CEEEEEEEEEeCC---eeEEeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeeEEECCCccccCHHH
Confidence 4899999999976 56999999999 999999999999999999999999994 445553
Q ss_pred ccceeeEEcC------CCccchhHHHHHHhh-------------CCCh--hhhhhhhhHHHHHHHHHHHHHH---HHhee
Q 039839 75 SQTTKGIWIA------KCVGIEPFTIAMDLE-------------GSDS--RERGEDDTTFEKQSALFALAIA---DIVLI 130 (825)
Q Consensus 75 ~q~~~G~~~~------~~t~~enl~l~ld~~-------------g~~~--~er~e~~~~~ErQRv~iArALa---~VLLL 130 (825)
.+..+|++++ ..++.+|+.+..... +... .........+|+||++||||++ ++|||
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lil 151 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL 151 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1234666653 345677776543111 1100 0000112334999999999999 99999
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 131 DEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
||||++||... +..+.+.+.++.++ |.|+|+|||+..... .||.-
T Consensus 152 DEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~~~--~~d~~ 196 (200)
T PRK13540 152 DEPLVALDELS------LLTIITKIQEHRAK-GGAVLLTSHQDLPLN--KADYE 196 (200)
T ss_pred eCCCcccCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCchhcc--ccchh
Confidence 99999999999 99999999998765 899999999997775 57754
No 285
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.90 E-value=9.4e-24 Score=254.33 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=140.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+...-+.+++++++.+ ++|++++|+||||||||||+|+|.|+ ++|.+|+.
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i--~~Ge~vaIvG~SGsGKSTLl~lL~gl----~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTL--HPGEVVALVGPSGSGKSTVAALLQNL----YQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEE--cCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCCEEEECCEEHHhcCHH
Confidence 599999999996422256999999999 99999999999999999999999999 66777762
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHh------------hC-----------CC--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDL------------EG-----------SD--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~------------~g-----------~~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..++++.|++ ++.+|+.++... .+ .+ -.+.+.....+||||++||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 24578887654 557777764210 01 11 012233345569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ +||||||||++||.+. .+.+.+ .. . . .++|+|+|||+++... .||+|+++++|+|++.|+.++
T Consensus 632 Ll~~p~ILILDEpTSaLD~~t------e~~i~~-~~-~-~-~~~TvIiItHrl~~i~--~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAEC------EQLLQE-SR-S-R-ASRTVLLIAHRLSTVE--RADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HhcCCCEEEEEccccccCHHH------HHHHHH-hh-c-c-CCCeEEEEeccHHHHH--hCCEEEEEECCEEEEeeCHHH
Confidence 99 9999999999999988 888887 22 2 2 3789999999998765 799999999999999999877
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
.++.
T Consensus 700 L~~~ 703 (711)
T TIGR00958 700 LMED 703 (711)
T ss_pred HHhC
Confidence 6543
No 286
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=9.1e-24 Score=244.85 Aligned_cols=172 Identities=11% Similarity=0.098 Sum_probs=132.9
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++ .+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|..
T Consensus 256 ~~l~~~~l~~--------~~l~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~G~~----~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSG--------PGVNDVSFTL--RKGEILGVSGLMGAGRTELMKVLYGAL----PRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCccc--------CCcccceEEE--cCCcEEEEecCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCCCCH
Confidence 4688888873 2688999999 999999999999999999999999994 4444441
Q ss_pred ----cceeeEEcCCC---------ccchhHHHHHH-hh----C-CChhh---------------------hhhhhhHHHH
Q 039839 76 ----QTTKGIWIAKC---------VGIEPFTIAMD-LE----G-SDSRE---------------------RGEDDTTFEK 115 (825)
Q Consensus 76 ----q~~~G~~~~~~---------t~~enl~l~ld-~~----g-~~~~e---------------------r~e~~~~~Er 115 (825)
+..+||++|.. ++.+|+.+... .. + ....+ .......+||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 12478887763 45566654311 00 1 11100 0111233499
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
||++||+|++ ++|||||||++||+.. +..+.++++++.++ |.|||+||||++.+. .+||+++++++|+|
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tviivtHd~~~~~-~~~d~v~~l~~G~i 473 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGA------KKEIYQLINQFKAE-GLSIILVSSEMPEVL-GMSDRILVMHEGRI 473 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHH-hhCCEEEEEECCEE
Confidence 9999999999 9999999999999999 99999999999876 999999999998773 58999999999999
Q ss_pred EEecCcccc
Q 039839 193 WDAVPKPQT 201 (825)
Q Consensus 193 ~~~g~~~e~ 201 (825)
+..++++++
T Consensus 474 ~~~~~~~~~ 482 (501)
T PRK10762 474 SGEFTREQA 482 (501)
T ss_pred EEEeccccC
Confidence 998876654
No 287
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-23 Score=243.16 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=149.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|..++-.+++++++|++ ++|++|||+||||+||||+.++|-.+ .+|.+|+.
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti--~pGe~vALVGPSGsGKSTiasLL~rf----Y~PtsG~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTI--RPGEVVALVGPSGSGKSTIASLLLRF----YDPTSGRILLDGVPISDINHK 538 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeee--CCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCCeEEECCeehhhcCHH
Confidence 599999999998765578999999999 99999999999999999999999999 78888872
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhhCC-------------------------ChhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLEGS-------------------------DSRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~g~-------------------------~~~er~e~~~~~ErQRv~iArA 123 (825)
++.+|++-|.+ ++.||+.++.+.... .-.|++-....+||||++||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH
Confidence 35678775543 568898887651110 0012222223339999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|. .||||||-|++||.|. ...|.+.|.++.+ +.|+|+|.|.++.+. .+|+|+++++|++++.|+.++
T Consensus 619 Llr~P~VLILDEATSALDaeS------E~lVq~aL~~~~~--~rTVlvIAHRLSTV~--~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAES------EYLVQEALDRLMQ--GRTVLVIAHRLSTVR--HADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HhcCCCEEEEechhhhcchhh------HHHHHHHHHHhhc--CCeEEEEehhhhHhh--hccEEEEEcCCeEEecccHHH
Confidence 99 9999999999999999 9999999988875 589999999998886 799999999999999998777
Q ss_pred ccCCc
Q 039839 201 TLKNT 205 (825)
Q Consensus 201 ~l~~~ 205 (825)
.++..
T Consensus 689 Ll~~~ 693 (716)
T KOG0058|consen 689 LLSKP 693 (716)
T ss_pred HhhCc
Confidence 76544
No 288
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.90 E-value=1.1e-23 Score=219.43 Aligned_cols=161 Identities=13% Similarity=0.150 Sum_probs=119.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------cceeeEEcCCC--------ccchhHHHHHH--
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------QTTKGIWIAKC--------VGIEPFTIAMD-- 97 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------q~~~G~~~~~~--------t~~enl~l~ld-- 97 (825)
.+|++++|+||||||||||+++|+|+ ..+.+|+. +..+||+++.. ++.+|+.+...
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~----~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGL----IPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 78999999999999999999999999 45566641 23478887653 23445443211
Q ss_pred --hhCCChhh---hhh-----------------hhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHH
Q 039839 98 --LEGSDSRE---RGE-----------------DDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVF 152 (825)
Q Consensus 98 --~~g~~~~e---r~e-----------------~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~ 152 (825)
..+..... +.. .....||||++||+|++ ++||+||||++||+.. +..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~------~~~l~ 153 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT------QELLT 153 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHH
Confidence 00001000 000 11223999999999999 9999999999999999 99999
Q ss_pred HHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCccccccc
Q 039839 153 QVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNTPLSEFF 211 (825)
Q Consensus 153 elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~~l~d~f 211 (825)
+.+.++.++ |.|+|++|||++.+. ..||+++++ +|+++..|+.++...+..+.+.|
T Consensus 154 ~~l~~~~~~-~~tvii~sH~~~~~~-~~~d~i~~l-~G~i~~~~~~~~~~~~~~~~~~~ 209 (223)
T TIGR03771 154 ELFIELAGA-GTAILMTTHDLAQAM-ATCDRVVLL-NGRVIADGTPQQLQDPAPWMTTF 209 (223)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHHHH-HhCCEEEEE-CCEEEeecCHHHhcChHHHHHHh
Confidence 999999865 899999999997663 479999999 79999999877765554444444
No 289
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=2.3e-23 Score=245.31 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=144.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|++.. +.+++++++.+ .+|++++|+||||||||||+++|+|+ .+|.+|+.
T Consensus 338 ~i~~~~v~f~y~~~~-~~il~~i~~~i--~~G~~~aivG~sGsGKSTL~~ll~g~----~~p~~G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 338 SLTLNNVSFTYPDQP-QPVLKGLSLQI--KAGEKVALLGRTGCGKSTLLQLLTRA----WDPQQGEILLNGQPIADYSEA 410 (574)
T ss_pred eEEEEEEEEECCCCC-CcceecceEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCceEEECCEEhhhCCHH
Confidence 599999999996421 46899999999 99999999999999999999999999 56777761
Q ss_pred --cceeeEEcCCC-----ccchhHHHHH------------HhhCCCh------------hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAM------------DLEGSDS------------RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~l------------d~~g~~~------------~er~e~~~~~ErQRv~iArAL 124 (825)
+..+|+++|.. ++.+|+.+.. +..+... .+.+.....+||||++||||+
T Consensus 411 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal 490 (574)
T PRK11160 411 ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred HHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH
Confidence 24578887654 4566766531 1112111 112333456699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||.+. .+.+.+.+.++.+ ++|+|+|||+++... .||+++++++|++++.|+.++.
T Consensus 491 l~~~~ililDE~ts~lD~~t------~~~i~~~l~~~~~--~~tviiitHr~~~~~--~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAET------ERQILELLAEHAQ--NKTVLMITHRLTGLE--QFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred hcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecChhHHH--hCCEEEEEeCCeEEEeCCHHHH
Confidence 9 9999999999999999 9999999999863 799999999998775 6999999999999999987776
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
++.
T Consensus 561 ~~~ 563 (574)
T PRK11160 561 LAQ 563 (574)
T ss_pred Hhc
Confidence 543
No 290
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.90 E-value=1.6e-23 Score=216.99 Aligned_cols=160 Identities=15% Similarity=0.062 Sum_probs=123.3
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc--c----eee---EEcCCCccchhHHHHHH
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ--T----TKG---IWIAKCVGIEPFTIAMD 97 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q--~----~~G---~~~~~~t~~enl~l~ld 97 (825)
+++++++.+ .+|++++|+||||||||||+|+|+|+ ..|.+|+.. . ..| .+++..++.+|+.+...
T Consensus 2 vl~~vs~~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl----~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 2 VLDKTDFVM--GYHEHIGILAAPGSGKTTLTRLLCGL----DAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMAS 75 (213)
T ss_pred eeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHH
Confidence 678999999 99999999999999999999999999 456666531 0 111 23455677889888766
Q ss_pred hhCCChhhhhh-----------------hhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHH
Q 039839 98 LEGSDSRERGE-----------------DDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR 157 (825)
Q Consensus 98 ~~g~~~~er~e-----------------~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~ 157 (825)
..+.+..+..+ ....+||||++||+|++ +++|+|||++++|+.. .+.+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~------~~~~~~~l~~ 149 (213)
T PRK15177 76 LYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT------QLRMQAALAC 149 (213)
T ss_pred HcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH------HHHHHHHHHH
Confidence 54443222111 11223999999999999 9999999999999888 8899998765
Q ss_pred hhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 158 LFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 158 L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
..+ +.|+|++|||+..+. ..||++++|++|+++..++..+.
T Consensus 150 ~~~--~~~ii~vsH~~~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 150 QLQ--QKGLIVLTHNPRLIK-EHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred Hhh--CCcEEEEECCHHHHH-HhcCeeEEEECCeEEEeCCHHHH
Confidence 443 357999999997763 47999999999999988775543
No 291
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.1e-23 Score=244.61 Aligned_cols=173 Identities=12% Similarity=0.142 Sum_probs=132.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++ .+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEV--RAGEILGLAGVVGAGRTELAETLYGLR----PARGGRIMLNGKEINALST 332 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCcEEEECCEECCCCCH
Confidence 3788998883 1488999999 999999999999999999999999994 4455541
Q ss_pred ----cceeeEEcCC---------CccchhHHHHH-H---h-----------------hCCC-h--hhhhhhhhHHHHHHH
Q 039839 76 ----QTTKGIWIAK---------CVGIEPFTIAM-D---L-----------------EGSD-S--RERGEDDTTFEKQSA 118 (825)
Q Consensus 76 ----q~~~G~~~~~---------~t~~enl~l~l-d---~-----------------~g~~-~--~er~e~~~~~ErQRv 118 (825)
+..+||++|. .++.+|+.... . . .|.. . .........+||||+
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 1236777664 23445543210 0 0 0110 0 000111223499999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+||+|++ +||||||||+|||+.. +..+.++|.++.++ |.|||+||||++.+. .+||+++++++|+|+..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tiIivsHd~~~i~-~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSA------RNDIYQLIRSIAAQ-NVAVLFISSDLEEIE-QMADRVLVMHQGEISGA 484 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHH-HhCCEEEEEECCEEEEE
Confidence 9999999 9999999999999999 99999999999875 899999999998774 58999999999999999
Q ss_pred cCccccc
Q 039839 196 VPKPQTL 202 (825)
Q Consensus 196 g~~~e~l 202 (825)
|+++++.
T Consensus 485 ~~~~~~~ 491 (510)
T PRK15439 485 LTGAAIN 491 (510)
T ss_pred EccccCC
Confidence 9876654
No 292
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=2.4e-23 Score=240.55 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=129.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+.++ +.+|+
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~---~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQV--NPGEHWQIVGPNGAGKSTLLSLITGDHPQ---GYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEE--cCCCEEEEECCCCCCHHHHHHHHcCCCCc---ccCCeEEEecccCCCCCC
Confidence 47999999999976 46899999999 99999999999999999999999997431 02232
Q ss_pred ---ccceeeEEcCCCc-------cchhHHH-HH-H---h------------------hCCCh---hhhhhhhhHHHHHHH
Q 039839 75 ---SQTTKGIWIAKCV-------GIEPFTI-AM-D---L------------------EGSDS---RERGEDDTTFEKQSA 118 (825)
Q Consensus 75 ---~q~~~G~~~~~~t-------~~enl~l-~l-d---~------------------~g~~~---~er~e~~~~~ErQRv 118 (825)
.+..+|++++... ..+++.+ .. . . .|... .........+|||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 1234778766421 1222221 10 0 0 01110 000011223399999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccc-ccCcEEEEeCCeEEE
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLE-YLEPILREDIQKIWD 194 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~-~~drvlvl~~GkI~~ 194 (825)
+||+|++ ++|||||||+|||++. +..+.++|.++.++.++|||+||||++.+. . +||++++|++|+|+.
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tviivsHd~~~~~-~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLN------RQLVRRFVDVLISEGETQLLFVSHHAEDAP-ACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhcCCcEEEEEecchhhhh-hhhheeEEEecCCceEE
Confidence 9999999 9999999999999999 999999999998763467999999998774 4 489999999999876
Q ss_pred ec
Q 039839 195 AV 196 (825)
Q Consensus 195 ~g 196 (825)
..
T Consensus 484 ~~ 485 (490)
T PRK10938 484 YV 485 (490)
T ss_pred ee
Confidence 54
No 293
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.89 E-value=2.2e-23 Score=245.95 Aligned_cols=176 Identities=19% Similarity=0.202 Sum_probs=141.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|+.. ..+++++++.+ .+|++++|+|+||||||||+|+|+|+ .+|.+|..
T Consensus 334 ~I~~~~vsf~y~~~--~~iL~~inl~i--~~G~~v~IvG~sGsGKSTLl~lL~gl----~~p~~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDNS--RQGVEDVSFEA--KPGQTVAIVGPTGAGKSTLINLLQRV----FDPQSGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEeCCC--CceecceeEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCCEEEECCEEhhhCCHH
Confidence 59999999999642 46899999999 99999999999999999999999999 56666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH------------hhC-----------CCh--hhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD------------LEG-----------SDS--RERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld------------~~g-----------~~~--~er~e~~~~~ErQRv~iArA 123 (825)
+..++|++|.. ++.+|+.+... ..| .+. .+.+.....+||||++||||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred HHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 34678887764 45677765310 001 110 11122344559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ +||||||||++||++. .+.+++.+.++.+ ++|+|+|||+++... .||+++++++|++.+.|+.++
T Consensus 486 ll~~~~iliLDEpts~LD~~t------~~~i~~~l~~~~~--~~tvIiitHr~~~~~--~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 486 LLKDPPILILDEATSALDVET------EAKVKAALDELMK--GRTTFIIAHRLSTVR--NADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHhc--CCEEEEEEecHHHHH--hCCEEEEEECCEEEEeCCHHH
Confidence 99 9999999999999999 9999999998753 799999999997765 799999999999999998666
Q ss_pred cc
Q 039839 201 TL 202 (825)
Q Consensus 201 ~l 202 (825)
..
T Consensus 556 l~ 557 (588)
T PRK13657 556 LV 557 (588)
T ss_pred HH
Confidence 54
No 294
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=2.7e-23 Score=243.23 Aligned_cols=177 Identities=16% Similarity=0.118 Sum_probs=139.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.++++|++++|+... +.+++++++.+ .+|+.++|+||||||||||+++|+|+ .+|.+|+.
T Consensus 316 ~i~~~~v~~~y~~~~-~~~l~~~~~~i--~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 316 HLSVENVTIVPPGGK-KPTLRGISFRL--QAGEALAIIGPSGSGKSTLARLIVGI----WPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred eEEEEEEEEEcCCCC-ccccccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEECCEehhhCCHH
Confidence 599999999996421 46899999999 99999999999999999999999999 55666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH------------hhC-----------CC--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD------------LEG-----------SD--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld------------~~g-----------~~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|.. ++.+|+.+... ..+ .+ -.+.+.....+||||++||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 23577776653 44566653210 000 00 011222344559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||.+. .+.+.+.+.++..+ ++|+|++||+++... .||+++++++|++++.|+.++
T Consensus 469 ll~~~~ililDEpts~LD~~~------~~~i~~~l~~~~~~-~~tvi~ith~~~~~~--~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEG------EQALANAIKALKAR-GITVVVITHRPSLLG--CVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HhcCCCEEEEeCCccccCHHH------HHHHHHHHHHHhhC-CCEEEEEeCCHHHHH--hCCEEEEEECCEEEeeCCHHH
Confidence 99 9999999999999999 99999999998644 799999999998654 799999999999999998665
Q ss_pred c
Q 039839 201 T 201 (825)
Q Consensus 201 ~ 201 (825)
.
T Consensus 540 l 540 (544)
T TIGR01842 540 V 540 (544)
T ss_pred H
Confidence 4
No 295
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=1.3e-23 Score=228.41 Aligned_cols=189 Identities=12% Similarity=0.133 Sum_probs=147.9
Q ss_pred ceEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC-cCCCc-----------
Q 039839 8 CCMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD-AFRGR----------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~-~~~G~----------- 74 (825)
+.|.++|++..|... ....++++|+|.+ ..||.+||+|.||||||-..+.|+|+.+..-. ..+|+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i--~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDI--EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeee--cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 479999999999632 2467899999999 99999999999999999999999999753100 01122
Q ss_pred --------ccceeeEEcCCCccchhHH--------HHHHhh-CCChhhhhhhhh-----------------------HHH
Q 039839 75 --------SQTTKGIWIAKCVGIEPFT--------IAMDLE-GSDSRERGEDDT-----------------------TFE 114 (825)
Q Consensus 75 --------~q~~~G~~~~~~t~~enl~--------l~ld~~-g~~~~er~e~~~-----------------------~~E 114 (825)
.-..++++||.+..--|.. -++.++ |...+...+++. ..|
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 1246899998764322222 222222 333333222221 229
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
||||.||+||+ ++||.||||++||..- +..|++++++|.++.|+.++|+|||++++. .++|||++|..|+
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtv------QaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr-~~ADrV~VM~~G~ 235 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTV------QAQILDLLKELQAELGMAILFITHDLGIVR-KFADRVYVMQHGE 235 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhh------HHHHHHHHHHHHHHhCcEEEEEeccHHHHH-HhhhhEEEEeccE
Confidence 99999999999 9999999999999998 999999999999999999999999999985 7899999999999
Q ss_pred EEEecCcccccCCc
Q 039839 192 IWDAVPKPQTLKNT 205 (825)
Q Consensus 192 I~~~g~~~e~l~~~ 205 (825)
|++.|..+.+|...
T Consensus 236 ivE~~~t~~lF~~P 249 (534)
T COG4172 236 IVETGTTETLFAAP 249 (534)
T ss_pred EeecCcHHHHhhCC
Confidence 99999988887643
No 296
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=2.6e-23 Score=224.45 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=133.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK 85 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~ 85 (825)
..|+++|+++. . ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+. ...+||+++.
T Consensus 38 ~~l~i~nls~~--~---~~vL~~vs~~i--~~Ge~~~liG~NGsGKSTLl~~I~Gl----~~p~~G~I~i~g~i~yv~q~ 106 (282)
T cd03291 38 NNLFFSNLCLV--G---APVLKNINLKI--EKGEMLAITGSTGSGKTSLLMLILGE----LEPSEGKIKHSGRISFSSQF 106 (282)
T ss_pred CeEEEEEEEEe--c---ccceeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEECCEEEEEeCc
Confidence 46999999985 2 45899999999 99999999999999999999999999 56777763 2246777654
Q ss_pred C-----ccchhHHHHHHh-----------hCCChh-------------hhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 86 C-----VGIEPFTIAMDL-----------EGSDSR-------------ERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 86 ~-----t~~enl~l~ld~-----------~g~~~~-------------er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
. ++.+|+.+.... .+.... ........+|+||++||+|++ ++||||||
T Consensus 107 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3 445555442110 011000 001133456999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHH-HHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 134 CHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL-~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
|++||++. +..+++.+ .++. + +.|||++|||++... .||++++|++|+++..|+++++.
T Consensus 187 t~gLD~~~------~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~--~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 187 FGYLDVFT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK--KADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CccCCHHH------HHHHHHHHHHHhh-C-CCEEEEEeCChHHHH--hCCEEEEEECCEEEEECCHHHHH
Confidence 99999998 88898865 4554 3 789999999997765 69999999999999999876654
No 297
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.89 E-value=2.6e-23 Score=210.93 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=106.3
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------------cceeeEEcCCC-
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------------QTTKGIWIAKC- 86 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------------q~~~G~~~~~~- 86 (825)
..+++++++.+ .+|++++|+|||||||||||++|+|+. .+.+|+. +..+|++++..
T Consensus 5 ~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 5 PEVLKGLNFAA--ERGEVLALLGANGAGKSTLLLHLNGLL----RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred cceecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 46899999999 999999999999999999999999994 3444431 12467777653
Q ss_pred ------ccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---HHheecCCCCCC
Q 039839 87 ------VGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA---DIVLINMWCHDI 137 (825)
Q Consensus 87 ------t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa---~VLLLDEPtsgL 137 (825)
++.+|+.+.....+.+..+..+ ....+|+||++||||++ ++|||||||++|
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 79 DQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 4466766543322222111100 11223999999999999 999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCC
Q 039839 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTK 175 (825)
Q Consensus 138 D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~ 175 (825)
|+.. ++.+.+++.++.++ |+|||+||||++.
T Consensus 159 D~~~------~~~~~~~l~~~~~~-~~tili~sH~~~~ 189 (190)
T TIGR01166 159 DPAG------REQMLAILRRLRAE-GMTVVISTHDVDL 189 (190)
T ss_pred CHHH------HHHHHHHHHHHHHc-CCEEEEEeecccc
Confidence 9999 99999999999765 8999999999865
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.7e-23 Score=247.34 Aligned_cols=171 Identities=14% Similarity=0.136 Sum_probs=131.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----ceeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----TTKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~~~G~~~ 83 (825)
.+|++.|+++.|++ ..+++++++.+ .+|+++||+||||||||||||+|+|+ ..|.+|... ..+||++
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i--~~Ge~~~l~G~NGsGKSTLlk~l~G~----~~p~~G~i~~~~~~~igy~~ 381 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNL--VPGSRIGLLGRNGAGKSTLIKLLAGE----LAPVSGEIGLAKGIKLGYFA 381 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCeEEECCCEEEEEec
Confidence 47999999999976 56899999999 99999999999999999999999999 566777632 3578887
Q ss_pred CCC----ccchhHHHHH----------------HhhCCChh---hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCC
Q 039839 84 AKC----VGIEPFTIAM----------------DLEGSDSR---ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDI 137 (825)
Q Consensus 84 ~~~----t~~enl~l~l----------------d~~g~~~~---er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgL 137 (825)
|.. ....++...+ ...+.... ........+|||||+||++++ +||||||||++|
T Consensus 382 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 382 QHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred CcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 752 1111111111 01111110 011223445999999999999 999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE-EecCc
Q 039839 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW-DAVPK 198 (825)
Q Consensus 138 D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~-~~g~~ 198 (825)
|++. +..+.+.|.++ . | |||+||||++++. .+||+++++++|+|. ..|+.
T Consensus 462 D~~~------~~~l~~~L~~~--~-g-tvi~vSHd~~~~~-~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 462 DLDM------RQALTEALIDF--E-G-ALVVVSHDRHLLR-STTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred CHHH------HHHHHHHHHHc--C-C-eEEEEeCCHHHHH-HhCCEEEEEECCEEEEcCCCH
Confidence 9999 99999999987 2 4 9999999998774 589999999999987 55543
No 299
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=241.74 Aligned_cols=172 Identities=15% Similarity=0.190 Sum_probs=131.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.++++|++. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|..
T Consensus 257 ~l~~~~~~~-------~~~l~~isl~i--~~Ge~~~iiG~NGsGKSTLlk~l~G~~----~p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKG-------PGLREPISFSV--RAGEIVGLFGLVGAGRSELMKLLYGAT----RRTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred EEEEecccc-------CCcccceeEEE--eCCcEEEEEcCCCCCHHHHHHHHcCCC----cCCCceEEECCEECCCCCHH
Confidence 577888762 24789999999 999999999999999999999999994 3444431
Q ss_pred ---cceeeEEcCC---------CccchhHHHHHHhh----C--CChhh---h------------------hhhhhHHHHH
Q 039839 76 ---QTTKGIWIAK---------CVGIEPFTIAMDLE----G--SDSRE---R------------------GEDDTTFEKQ 116 (825)
Q Consensus 76 ---q~~~G~~~~~---------~t~~enl~l~ld~~----g--~~~~e---r------------------~e~~~~~ErQ 116 (825)
...+|+++|. .++.+|+.+..... + ..... . ......+|||
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 1235676664 34456655422111 1 00000 0 0112233999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|++||+|++ +||||||||+|||+.. +..+++++.++.++ |.|||+||||++.+. .+||+++++++|+++
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~-~~~d~i~~l~~g~i~ 475 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGA------KHEIYNVIYELAAQ-GVAVLFVSSDLPEVL-GVADRIVVMREGRIA 475 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHH-hhCCEEEEEECCEEE
Confidence 999999999 9999999999999999 99999999999875 999999999998773 689999999999999
Q ss_pred EecCcccc
Q 039839 194 DAVPKPQT 201 (825)
Q Consensus 194 ~~g~~~e~ 201 (825)
..|++++.
T Consensus 476 ~~~~~~~~ 483 (501)
T PRK11288 476 GELAREQA 483 (501)
T ss_pred EEEccccC
Confidence 99977653
No 300
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=240.96 Aligned_cols=173 Identities=9% Similarity=0.066 Sum_probs=130.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.+ +.+++++++.+ ..|++++|+|||||||||||++|+|+. .|.+|+.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDL--HKGEILGIAGLVGAKRTDIVETLFGIR----EKSAGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEE--eCCcEEEEecCCCCCHHHHHHHHcCCC----cCCccEEEECCEECCCCCH
Confidence 479999999874 34899999999 999999999999999999999999994 4555541
Q ss_pred ----cceeeEEcCC---------Cccchh-----HHHHHHhhCC-Chhh---------------------hhhhhhHHHH
Q 039839 76 ----QTTKGIWIAK---------CVGIEP-----FTIAMDLEGS-DSRE---------------------RGEDDTTFEK 115 (825)
Q Consensus 76 ----q~~~G~~~~~---------~t~~en-----l~l~ld~~g~-~~~e---------------------r~e~~~~~Er 115 (825)
+..+||+++. .++.+| +.+.....+. .... .......+||
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 1125666554 222222 1111111111 1000 0011223499
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
||++||+|++ +||||||||+|||+.. +..+++++.++.++ |.|||+||||++.+. .+||+++++++|++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~------~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~-~~~d~v~~l~~g~i 469 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGA------KFEIYQLIAELAKK-DKGIIIISSEMPELL-GITDRILVMSNGLV 469 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhH------HHHHHHHHHHHHHC-CCEEEEECCChHHHH-hhCCEEEEEECCEE
Confidence 9999999999 9999999999999999 99999999999876 999999999998773 68999999999999
Q ss_pred EEecCcc
Q 039839 193 WDAVPKP 199 (825)
Q Consensus 193 ~~~g~~~ 199 (825)
+..++.+
T Consensus 470 ~~~~~~~ 476 (491)
T PRK10982 470 AGIVDTK 476 (491)
T ss_pred EEEEccc
Confidence 9877654
No 301
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.89 E-value=3.1e-23 Score=243.53 Aligned_cols=178 Identities=16% Similarity=0.125 Sum_probs=142.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|.... ..+++++++.+ .+|++++|+|+||||||||+++|+|+ .+|.+|+.
T Consensus 330 ~i~~~~v~f~y~~~~-~~il~~inl~i--~~G~~v~IvG~sGsGKSTLl~lL~gl----~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD-RPALDSISLVI--EPGETVALVGRSGSGKSTLVNLIPRF----YEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEcCCCC-CccccCeeEEe--cCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCCeEEECCEeHHhcCHH
Confidence 499999999996422 56899999999 99999999999999999999999999 56777762
Q ss_pred --cceeeEEcCCC-----ccchhHHHHH-------------HhhCC-----------Ch--hhhhhhhhHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAM-------------DLEGS-----------DS--RERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~l-------------d~~g~-----------~~--~er~e~~~~~ErQRv~iAr 122 (825)
+..++|+.|++ +..+|+.+.. +..|. +. .+.+.....+||||++|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 23467876654 4466666431 11111 10 1222334566999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|++ +||||||||++||.+. .+.+++.+.++.+ ++|+|+|||+..... .||+|+++++|++.+.|+.+
T Consensus 483 all~~~~illLDEpts~LD~~~------~~~i~~~L~~~~~--~~tiIiitH~~~~~~--~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNES------ERLVQAALERLMQ--GRTTLVIAHRLSTIE--KADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHhC--CCEEEEEehhhHHHH--hCCEEEEEeCCEEEeeCCHH
Confidence 999 9999999999999999 9999999999854 689999999997775 79999999999999999877
Q ss_pred cccC
Q 039839 200 QTLK 203 (825)
Q Consensus 200 e~l~ 203 (825)
+.+.
T Consensus 553 ~l~~ 556 (571)
T TIGR02203 553 ELLA 556 (571)
T ss_pred HHHH
Confidence 7653
No 302
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=4.6e-23 Score=213.50 Aligned_cols=164 Identities=17% Similarity=0.164 Sum_probs=123.3
Q ss_pred EEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----------------
Q 039839 11 QLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR---------------- 74 (825)
Q Consensus 11 el~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~---------------- 74 (825)
++.|+.+.|+.. ..+++++++.+ .+|++++|+|||||||||||++|+|+. .+..|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRI--PTGQLTMIVGQVGCGKSSLLLAILGEM----QTLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCCCeEEECCccccccccccc
Confidence 688999999753 56899999999 999999999999999999999999995 344443
Q ss_pred ---ccceeeEEcCCC-----ccchhHHHHHHh-----------hCCChh-------------hhhhhhhHHHHHHHHHHH
Q 039839 75 ---SQTTKGIWIAKC-----VGIEPFTIAMDL-----------EGSDSR-------------ERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 75 ---~q~~~G~~~~~~-----t~~enl~l~ld~-----------~g~~~~-------------er~e~~~~~ErQRv~iAr 122 (825)
.+..+||+++.. ++.+|+.+.... .+.... ........+|+||++||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 013467776654 445555442110 011000 001123445999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHH--HHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQ--VMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~e--lL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
|++ ++|||||||++||+.. +..+++ ++..+.+ .|.|+|++|||++.+. .||+++++++|.
T Consensus 154 al~~~p~illlDEPt~~LD~~~------~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~--~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHL------SDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP--HADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHH------HHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh--hCCEEEEecCCC
Confidence 999 9999999999999998 999988 5555554 4899999999998775 699999998873
No 303
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=1e-22 Score=242.97 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=142.6
Q ss_pred ceEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 8 CCMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.+|+++|+++.|+.. ....+++++++.+ .+|++++|+||||||||||+++|+|+. ++.+|+.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~i~~~~ 76 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDI--YAGEMVAIVGASGSGKSTLMNILGCLD----KPTSGTYRVAGQDVATLD 76 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEcCcCC
Confidence 479999999999531 1145899999999 999999999999999999999999994 4555530
Q ss_pred --------cceeeEEcCCC------ccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHH
Q 039839 76 --------QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFA 121 (825)
Q Consensus 76 --------q~~~G~~~~~~------t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iA 121 (825)
+..+|++++.. ++.+|+.+.....+....+..+.. ...|+||++||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 77 ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence 23568886554 446677665443343322211111 12299999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
|||+ ++|||||||++||... ++.+.+++.++.++ |.|+|+|||+++.+. .||+++++++|++.+.|+.
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s------~~~l~~ll~~l~~~-g~tilivsH~~~~~~--~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHS------GEEVMAILHQLRDR-GHTVIIVTHDPQVAA--QAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEECCCHHHHH--hCCEEEEEECCEEEeecCc
Confidence 9999 9999999999999999 99999999999765 899999999998765 6999999999999999987
Q ss_pred cccc
Q 039839 199 PQTL 202 (825)
Q Consensus 199 ~e~l 202 (825)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 7654
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.89 E-value=3.3e-23 Score=243.58 Aligned_cols=178 Identities=20% Similarity=0.183 Sum_probs=142.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+....+.+++++++.+ ++|+.++|+||||||||||+++|+|+ +.|.+|+.
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i--~~Ge~i~IvG~sGsGKSTLlklL~gl----~~p~~G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTV--RPGETVALVGPSGAGKSTLFQLLLRF----YDPQSGRILLDGVDLRQLDPA 410 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEe--cCCCEEEEECCCCCCHHHHHHHHHhc----cCCCCCEEEECCEEHHhcCHH
Confidence 589999999996421146899999999 99999999999999999999999999 56666752
Q ss_pred --cceeeEEcCCC-----ccchhHHHHH------------HhhCC-----------Ch--hhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAM------------DLEGS-----------DS--RERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~l------------d~~g~-----------~~--~er~e~~~~~ErQRv~iArA 123 (825)
+..+||++|+. ++.+|+.++. +..|. +. .+.+.....+||||++||||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred HHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 23578887764 4567776531 11111 10 12223345569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++||+||||++||++. .+.+++.++++.+ ++|+|+|||+++... .||+++++++|++.+.|+.++
T Consensus 491 l~~~~~ililDEpts~lD~~~------~~~i~~~l~~~~~--~~t~IiitH~~~~~~--~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 491 ILKDAPILLLDEATSALDAES------EQLVQQALETLMK--GRTTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHhCCCeEEEeCcccccCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH--hCCEEEEEECCEEEeeecHHH
Confidence 99 9999999999999999 9999999999853 799999999997775 799999999999999998766
Q ss_pred cc
Q 039839 201 TL 202 (825)
Q Consensus 201 ~l 202 (825)
..
T Consensus 561 l~ 562 (576)
T TIGR02204 561 LI 562 (576)
T ss_pred HH
Confidence 54
No 305
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.89 E-value=3e-23 Score=243.86 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=145.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|+++ +.+++++++.+ ++|+.+||+||||||||||+|.|+|+ .++.+|+.
T Consensus 328 ~I~f~~vsf~y~~~--~~vl~~is~~i--~~Ge~vaiVG~sGsGKSTl~~LL~r~----~~~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 328 SIEFENVSFSYPGK--KPVLKDISFSI--EPGEKVAIVGPSGSGKSTLIKLLLRL----YDPTSGEILIDGIDIRDISLD 399 (567)
T ss_pred eEEEEEEEEEcCCC--CccccCceEEE--cCCCEEEEECCCCCCHHHHHHHHhcc----CCCCCCeEEECCEehhhcCHH
Confidence 48999999999842 67999999999 99999999999999999999999999 66777761
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHh-------------------h----CCC--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDL-------------------E----GSD--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~-------------------~----g~~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|+. |+.+|+.++... . |.+ -.+++.....+||||++||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 35677776654 556777665210 0 111 123444455669999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+. ++|||||||++||.+. .+.+.+.+.++.+ ++|+|+|+|.++... .||+|+++++|+|++.|++++
T Consensus 480 ll~~~~ILILDEaTSalD~~t------E~~I~~~l~~l~~--~rT~iiIaHRlsti~--~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 480 LLRNPPILILDEATSALDTET------EALIQDALKKLLK--GRTTLIIAHRLSTIK--NADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HhcCCCEEEEeccccccCHHh------HHHHHHHHHHHhc--CCEEEEEeccHhHHH--hCCEEEEEECCEEEEecCHHH
Confidence 99 9999999999999999 9999999998874 568888999997775 699999999999999999988
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
.+..
T Consensus 550 Ll~~ 553 (567)
T COG1132 550 LLAK 553 (567)
T ss_pred HHHc
Confidence 7654
No 306
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.6e-23 Score=219.07 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=135.7
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------------ccceeeEEcC--
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------------SQTTKGIWIA-- 84 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------------~q~~~G~~~~-- 84 (825)
.+.-++++.. ..--++||+|+||||||||+|+|+|+ ..|+.|+ .++++||+||
T Consensus 12 ~~~l~a~~~~--p~~GvTAlFG~SGsGKTslin~IaGL----~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA 85 (352)
T COG4148 12 NFALDANFTL--PARGITALFGPSGSGKTSLINMIAGL----TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85 (352)
T ss_pred ceEEEEeccC--CCCceEEEecCCCCChhhHHHHHhcc----CCccccEEEECCEEeecccCCcccChhhheeeeEeecc
Confidence 3455677777 55469999999999999999999999 5666665 2577999965
Q ss_pred ----CCccchhHHHHHHhh------------CCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCcccccc
Q 039839 85 ----KCVGIEPFTIAMDLE------------GSDS--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAA 143 (825)
Q Consensus 85 ----~~t~~enl~l~ld~~------------g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta 143 (825)
++++..|+.+++... |... ..+.......|||||+|+|||. ++|+||||.+.||..-
T Consensus 86 RLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R-- 163 (352)
T COG4148 86 RLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR-- 163 (352)
T ss_pred ccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch--
Confidence 567788888876533 1110 0011122334999999999999 9999999999999887
Q ss_pred CHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCcccc
Q 039839 144 NKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNTPLS 208 (825)
Q Consensus 144 ~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~~l~ 208 (825)
.++++-.+.+|.++.++.|++|||.++++ +..+|++++|++|++.+.|+.++++....+.
T Consensus 164 ----K~EilpylERL~~e~~IPIlYVSHS~~Ev-~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 164 ----KREILPYLERLRDEINIPILYVSHSLDEV-LRLADRVVVLENGKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred ----hhHHHHHHHHHHHhcCCCEEEEecCHHHH-HhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence 89999999999999899999999999666 3589999999999999999999888765443
No 307
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3e-23 Score=216.60 Aligned_cols=180 Identities=12% Similarity=0.119 Sum_probs=132.8
Q ss_pred eEEEEEeEEEecCc----c--------------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc
Q 039839 9 CMQLIDGNGEFNVD----G--------------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA 70 (825)
Q Consensus 9 ~Lel~nlsk~y~~~----~--------------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~ 70 (825)
|+.++|++|.|... . ......+++|.+ ++|++++++|||||||||+||+|.|+ +-|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~I--P~G~ivgflGaNGAGKSTtLKmLTGl----l~p 76 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEI--PKGEIVGFLGANGAGKSTTLKMLTGL----LLP 76 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeec--CCCcEEEEEcCCCCcchhhHHHHhCc----ccc
Confidence 68899999988421 0 123578999999 99999999999999999999999999 456
Q ss_pred CCCcc--------------cceeeEEcCCCc-------cchhHHHHHHhhCCChhh--------------------hhhh
Q 039839 71 FRGRS--------------QTTKGIWIAKCV-------GIEPFTIAMDLEGSDSRE--------------------RGED 109 (825)
Q Consensus 71 ~~G~~--------------q~~~G~~~~~~t-------~~enl~l~ld~~g~~~~e--------------------r~e~ 109 (825)
.+|.. -..+|+++.+.+ ..+.+...-.++..+..+ +...
T Consensus 77 ~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~ 156 (325)
T COG4586 77 TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK 156 (325)
T ss_pred CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence 66651 012222221111 111111111111122211 1222
Q ss_pred hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC-CCccccccCcEE
Q 039839 110 DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK-TKTPLEYLEPIL 185 (825)
Q Consensus 110 ~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl-~~a~l~~~drvl 185 (825)
...+||.|+.||.||. +||+|||||-|||.-. +..|.+.+++.++++++||+++||++ +++. +|+||+
T Consensus 157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a------q~~ir~Flke~n~~~~aTVllTTH~~~di~~--lc~rv~ 228 (325)
T COG4586 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA------QANIREFLKEYNEERQATVLLTTHIFDDIAT--LCDRVL 228 (325)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH------HHHHHHHHHHHHHhhCceEEEEecchhhHHH--hhhheE
Confidence 3344999999999999 9999999999999998 99999999999998999999999999 5555 899999
Q ss_pred EEeCCeEEEecCccccc
Q 039839 186 REDIQKIWDAVPKPQTL 202 (825)
Q Consensus 186 vl~~GkI~~~g~~~e~l 202 (825)
+++.|+++.+|+..+..
T Consensus 229 ~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 229 LIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred EeeCCcEeecccHHHHH
Confidence 99999999999876643
No 308
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=3.7e-23 Score=224.80 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=144.1
Q ss_pred cceEEEEEeEEEecCcc--------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCc--CCCc--
Q 039839 7 CCCMQLIDGNGEFNVDG--------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDA--FRGR-- 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~--------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~--~~G~-- 74 (825)
...++.+++...|.-+. -...++++++.. ..|+.+||+|.||||||||-.+|.++..+. +. ..|+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L--~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i 350 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL--RRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDI 350 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEe--cCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccc
Confidence 35799999999994211 124678999999 999999999999999999999999985321 10 0111
Q ss_pred ----------ccceeeEEcCCCcc--------chhHHHHHHhhC--CChhhhhhhhh---------------------HH
Q 039839 75 ----------SQTTKGIWIAKCVG--------IEPFTIAMDLEG--SDSRERGEDDT---------------------TF 113 (825)
Q Consensus 75 ----------~q~~~G~~~~~~t~--------~enl~l~ld~~g--~~~~er~e~~~---------------------~~ 113 (825)
.+..+-++||.+.+ .+-+.-++.+.+ .+..+|.+++. ..
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG 430 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG 430 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence 12334566665433 333333444432 22333333221 12
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
||||++||||++ ++++|||||++||..- +..|.+++++|.+++|.+.||+|||+..+. ..|++|++|.+|
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SV------QaQvv~LLr~LQ~k~~LsYLFISHDL~Vvr-Al~~~viVm~~G 503 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSV------QAQVLDLLRDLQQKHGLSYLFISHDLAVVR-ALCHRVIVMRDG 503 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHHH-HhhceEEEEeCC
Confidence 999999999999 9999999999999988 999999999999999999999999998884 689999999999
Q ss_pred eEEEecCcccccCCcc
Q 039839 191 KIWDAVPKPQTLKNTP 206 (825)
Q Consensus 191 kI~~~g~~~e~l~~~~ 206 (825)
+|++.|+.+++|.+..
T Consensus 504 kiVE~G~~~~if~~P~ 519 (534)
T COG4172 504 KIVEQGPTEAVFANPQ 519 (534)
T ss_pred EEeeeCCHHHHhcCCC
Confidence 9999999998886543
No 309
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.89 E-value=6.1e-23 Score=242.23 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=140.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.++++|+++.|+.. +.+++++++.+ .+|++++|+||||||||||+++|+|+ .+|.+|+.
T Consensus 334 ~i~~~~v~~~y~~~--~~~l~~i~~~i--~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEFANS--SQGVFDVSFEA--KAGQTVAIVGPTGAGKTTLINLLQRV----YDPTVGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEECCCC--CccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHccC----CCCCCCEEEECCEEhhhCCHH
Confidence 59999999999652 45899999999 99999999999999999999999999 55666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHh------------h-----------CCC--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDL------------E-----------GSD--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~------------~-----------g~~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|.. ++.+|+.+.... . |.+ -.+.+.....+||||++||||
T Consensus 406 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485 (585)
T ss_pred HHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 23567776653 446666553110 0 100 011222334559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||.+. .+.+.+.+.++.+ +.|+|+|||+++... .||+++++++|++.+.|+.++
T Consensus 486 ll~~p~ililDEpts~LD~~~------~~~i~~~l~~~~~--~~tvI~isH~~~~~~--~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVET------EARVKNAIDALRK--NRTTFIIAHRLSTVR--NADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEEcChHHHH--cCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999999 9999999998853 799999999998776 699999999999999998766
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
..+
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 543
No 310
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=5.6e-23 Score=247.05 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=142.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+... +.+++++++.+ ++|+.++|+|+||||||||+|+|+|+ ..|.+|+.
T Consensus 455 ~i~~~~vsf~y~~~~-~~il~~i~l~i--~~G~~vaivG~sGsGKSTL~~ll~g~----~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 455 AITFENIRFRYAPDS-PEVLSNLNLDI--KPGEFIGIVGPSGSGKSTLTKLLQRL----YTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred eEEEEEEEEEcCCCC-ccccccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCceEEECCEehhhCCHH
Confidence 599999999996421 46899999999 99999999999999999999999999 56777751
Q ss_pred --cceeeEEcCCC-----ccchhHHHHH------------HhhC-----------CCh--hhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAM------------DLEG-----------SDS--RERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~l------------d~~g-----------~~~--~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|+. ++.+|+.+.. +..| .+. .+.+.....+||||++||||
T Consensus 528 ~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 24578887764 4466665521 0001 110 12223344559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. .+.+.+.+.++.+ ++|+|+|||+++... .||+++++++|+|++.|+.++
T Consensus 608 ll~~~~ililDEpts~LD~~~------~~~i~~~l~~~~~--~~t~i~itH~~~~~~--~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYES------EALIMRNMREICR--GRTVIIIAHRLSTVR--ACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHH------HHHHHHHHHHHhC--CCEEEEEeCChHHHH--hCCEEEEEeCCEEEEeCCHHH
Confidence 99 9999999999999999 9999999999853 799999999998776 699999999999999998777
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
.++
T Consensus 678 l~~ 680 (694)
T TIGR01846 678 LLA 680 (694)
T ss_pred HHH
Confidence 654
No 311
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=5.3e-23 Score=242.36 Aligned_cols=172 Identities=16% Similarity=0.075 Sum_probs=134.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc--ceeeEEcCC
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ--TTKGIWIAK 85 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q--~~~G~~~~~ 85 (825)
.++++.|+++.|+. . .+.++++.+ .+|++++|+|||||||||||++|+|+ +.|.+|... ..+||++|.
T Consensus 339 ~~l~~~~ls~~~~~---~-~l~~~s~~i--~~Geiv~l~G~NGsGKSTLlk~L~Gl----~~p~~G~I~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGD---F-SLEVEGGEI--YEGEVIGIVGPNGIGKTTFAKLLAGV----LKPDEGEVDPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECC---E-EEEecceEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCceEEEEeeeEEEeccc
Confidence 47999999999965 2 378889999 99999999999999999999999999 567777642 356777665
Q ss_pred C------ccchhHHHHHHhhC-------------CCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCcccc
Q 039839 86 C------VGIEPFTIAMDLEG-------------SDS--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQ 141 (825)
Q Consensus 86 ~------t~~enl~l~ld~~g-------------~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Ep 141 (825)
. ++.+++.+.....+ ... .........+|||||+||+||+ +||||||||++||.+.
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 3 45666654322111 100 0001112334999999999999 9999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 142 AANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 142 ta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
+..+.++|+++.++.|.|+|+||||++.+. .+||++++++ |++...|.
T Consensus 489 ------~~~l~~~l~~l~~~~g~tviivsHD~~~~~-~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 489 ------RLAVAKAIRRIAEEREATALVVDHDIYMID-YISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred ------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEc-Ccceeeee
Confidence 999999999998766899999999998773 5799999997 58877765
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.1e-22 Score=207.47 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=117.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------cc
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------QT 77 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------q~ 77 (825)
||+++|++++|+. +.++. +++.+ .+|++++|+||||||||||+++|+|+. .+.+|.. ..
T Consensus 1 ~l~~~~l~~~~~~---~~l~~-vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ---KNLFD-LSITF--LPSAITYIKGANGCGKSSLLRMIAGIM----QPSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred CeEEEEeeEEECC---cEEEE-EEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCcccChhhhh
Confidence 4889999999965 34454 99999 999999999999999999999999994 4555641 12
Q ss_pred eeeEEcCC------CccchhHHHHHHhhC-------------CCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 78 TKGIWIAK------CVGIEPFTIAMDLEG-------------SDS--RERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 78 ~~G~~~~~------~t~~enl~l~ld~~g-------------~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
.++++.+. .++.+|+.+.....+ ... ..........|+||++||+|++ ++||+|||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 24555432 355677765432221 110 0011112334999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
|++||+.. +..+.+++.++.++ |.|+|+||||++..+ .+|.+
T Consensus 151 ~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~i~--~~~~~ 192 (195)
T PRK13541 151 ETNLSKEN------RDLLNNLIVMKANS-GGIVLLSSHLESSIK--SAQIL 192 (195)
T ss_pred cccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCccccc--hhhee
Confidence 99999999 99999999876554 899999999998876 56654
No 313
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=8e-23 Score=240.50 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=141.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+... ..+++++++.+ .+|++++|+||||||||||+++|+|+ .+|.+|+.
T Consensus 313 ~I~~~~v~~~y~~~~-~~~l~~i~~~i--~~G~~~~ivG~sGsGKSTLl~ll~g~----~~p~~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQTD-HPALENVNFTL--KPGQMLGICGPTGSGKSTLLSLIQRH----FDVSEGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCCCC-CccccCeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcc----cCCCCCEEEECCEEHhhCCHH
Confidence 489999999996421 46899999999 99999999999999999999999999 56677751
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH------------hhCCCh-------------hhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD------------LEGSDS-------------RERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld------------~~g~~~-------------~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|.. ++.+|+.+... ..+... .+.+.....+||||++||||
T Consensus 386 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa 465 (569)
T PRK10789 386 SWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465 (569)
T ss_pred HHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 23467776653 45667655311 111100 11122344559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. .+.+++.++++. + ++|+|+|||+++... .||+++++++|++...|+.++
T Consensus 466 ll~~~~illlDEpts~LD~~~------~~~i~~~l~~~~-~-~~tii~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 466 LLLNAEILILDDALSAVDGRT------EHQILHNLRQWG-E-GRTVIISAHRLSALT--EASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HhcCCCEEEEECccccCCHHH------HHHHHHHHHHHh-C-CCEEEEEecchhHHH--cCCEEEEEeCCEEEEecCHHH
Confidence 99 9999999999999999 999999999985 3 799999999997765 799999999999999998777
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
.++
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 654
No 314
>PLN03211 ABC transporter G-25; Provisional
Probab=99.89 E-value=6.1e-23 Score=244.59 Aligned_cols=199 Identities=13% Similarity=0.126 Sum_probs=143.6
Q ss_pred EEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-----------ccceee
Q 039839 12 LIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-----------SQTTKG 80 (825)
Q Consensus 12 l~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-----------~q~~~G 80 (825)
+.|+++.|++ +.+++++++.+ .+|+++||+||||||||||||+|+|...+. ..+|+ ....+|
T Consensus 71 ~~~l~~~~~~---~~iL~~vs~~i--~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~--~~sG~I~inG~~~~~~~~~~i~ 143 (659)
T PLN03211 71 ISDETRQIQE---RTILNGVTGMA--SPGEILAVLGPSGSGKSTLLNALAGRIQGN--NFTGTILANNRKPTKQILKRTG 143 (659)
T ss_pred cccccccCCC---CeeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCCCCC--ceeEEEEECCEECchhhccceE
Confidence 3445555644 56999999999 999999999999999999999999984321 12443 123467
Q ss_pred EEcCC------CccchhHHHHHHhh---CCChhhhhh-------------------------hhhHHHHHHHHHHHHHH-
Q 039839 81 IWIAK------CVGIEPFTIAMDLE---GSDSRERGE-------------------------DDTTFEKQSALFALAIA- 125 (825)
Q Consensus 81 ~~~~~------~t~~enl~l~ld~~---g~~~~er~e-------------------------~~~~~ErQRv~iArALa- 125 (825)
++.|. .++.+++.+..... .....+..+ ....+||||++||++|+
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence 77543 46788887754322 111111111 12334999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC-CccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT-KTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~-~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
+||||||||+|||... ...+.+.++++.++ |+|||++||+++ .+ ...+|+++++++|+++..|++++.
T Consensus 224 ~P~iLlLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i-~~~~D~iilL~~G~iv~~G~~~~~- 294 (659)
T PLN03211 224 NPSLLILDEPTSGLDATA------AYRLVLTLGSLAQK-GKTIVTSMHQPSSRV-YQMFDSVLVLSEGRCLFFGKGSDA- 294 (659)
T ss_pred CCCEEEEeCCCCCcCHHH------HHHHHHHHHHHHhC-CCEEEEEecCCCHHH-HHhhceEEEecCCcEEEECCHHHH-
Confidence 9999999999999999 99999999999875 999999999997 34 258999999999999999986654
Q ss_pred CCcccccccccccccccccccchhhHHHHH
Q 039839 203 KNTPLSEFFNVEVTALSSYEEKEGQFKEQV 232 (825)
Q Consensus 203 ~~~~l~d~f~~~~~~l~h~~~~~~~F~~~v 232 (825)
.++|.---...|. ..+|.+|.-++
T Consensus 295 -----~~~f~~~G~~~P~-~~NpADf~ldv 318 (659)
T PLN03211 295 -----MAYFESVGFSPSF-PMNPADFLLDL 318 (659)
T ss_pred -----HHHHHHCCCCCCC-CCCHHHHHHHH
Confidence 2333211011122 25677776655
No 315
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=9.1e-23 Score=242.87 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=127.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----ceeeEEcC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----TTKGIWIA 84 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~~~G~~~~ 84 (825)
||+++|++++|+. ..++++++|.+ .+|+++||+||||||||||||+|+|+ ..|++|... ..++++.+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i--~~Ge~v~LvG~NGsGKSTLLriiaG~----~~p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHI--EDNERVCLVGRNGAGKSTLMKILNGE----VLLDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEE--CCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCeEEEeCCCCEEEEecc
Confidence 7999999999976 57999999999 99999999999999999999999999 456667631 12344332
Q ss_pred CC------ccchhHH------------------------------HHHHh----------------------hCCChhhh
Q 039839 85 KC------VGIEPFT------------------------------IAMDL----------------------EGSDSRER 106 (825)
Q Consensus 85 ~~------t~~enl~------------------------------l~ld~----------------------~g~~~~er 106 (825)
.. ++.+++. ....+ .|......
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 153 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAA 153 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCc
Confidence 21 1111110 00000 00000001
Q ss_pred hhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 107 GEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 107 ~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
......+|||||+||+||+ +||||||||++||++. +..+.+.|.++ +.|||+||||...+. ..||+
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~------~~~L~~~L~~~----~~tvlivsHd~~~l~-~~~d~ 222 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET------IEWLEGFLKTF----QGSIIFISHDRSFIR-NMATR 222 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHhC----CCEEEEEeCCHHHHH-HhcCe
Confidence 1122344999999999999 9999999999999999 99999999887 249999999998774 57999
Q ss_pred EEEEeCCeEEE-ecCccc
Q 039839 184 ILREDIQKIWD-AVPKPQ 200 (825)
Q Consensus 184 vlvl~~GkI~~-~g~~~e 200 (825)
|+++++|+++. .|+...
T Consensus 223 i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred EEEEECCEEEEecCCHHH
Confidence 99999999974 465443
No 316
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.88 E-value=3.4e-23 Score=227.80 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=117.6
Q ss_pred EECCCCCChhHHHHHHHhcccccCCcCCCcc-------------cceeeEEcCC------CccchhHHHHHHhhCCChhh
Q 039839 45 IMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRE 105 (825)
Q Consensus 45 IiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~e 105 (825)
|+|||||||||||++|+|+. .|.+|+. +..+||++|. .++.+|+.+.+...+....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~----~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE----QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC----CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH
Confidence 68999999999999999994 4555541 2347887654 46678888776544433221
Q ss_pred hhhh--------------------hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCC
Q 039839 106 RGED--------------------DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR 162 (825)
Q Consensus 106 r~e~--------------------~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~ 162 (825)
..+. ...+||||++|||||+ ++|||||||++||+.. +..+.+.++++.++.
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~------~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL------RDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhc
Confidence 1111 1223999999999999 9999999999999999 999999999998766
Q ss_pred CcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 163 KTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 163 g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
|+|+|+||||++.+. .+||++++|++|+|...|++.+++..
T Consensus 151 g~tiiivTHd~~e~~-~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 151 GITFVFVTHDQEEAM-TMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 899999999998763 58999999999999999988776543
No 317
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=242.23 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=126.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIA 84 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~ 84 (825)
||+++|++++|++ +.+++++++.+ .+|+++||+||||||||||||+|+|+ ..|++|.. ...+|++.+
T Consensus 1 ~i~i~nls~~~g~---~~~l~~vs~~i--~~Ge~v~LvG~NGsGKSTLLkiL~G~----~~pd~G~I~~~~~~~i~~~~q 71 (638)
T PRK10636 1 MIVFSSLQIRRGV---RVLLDNATATI--NPGQKVGLVGKNGCGKSTLLALLKNE----ISADGGSYTFPGNWQLAWVNQ 71 (638)
T ss_pred CEEEEEEEEEeCC---ceeecCcEEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEecCCCEEEEEec
Confidence 4899999999987 57999999999 99999999999999999999999998 55677763 224566544
Q ss_pred CC-----ccchhHHH-----------------------H----------------------HHhhCCCh---hhhhhhhh
Q 039839 85 KC-----VGIEPFTI-----------------------A----------------------MDLEGSDS---RERGEDDT 111 (825)
Q Consensus 85 ~~-----t~~enl~l-----------------------~----------------------ld~~g~~~---~er~e~~~ 111 (825)
.. +....+.. . +...|... ........
T Consensus 72 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 151 (638)
T PRK10636 72 ETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFS 151 (638)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcC
Confidence 21 11111100 0 00001100 00011123
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.+|||||+||+||+ +||||||||++||++. ...+.+.|.++ +.|||+||||...+. .+|+++++++
T Consensus 152 gGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~------~~~L~~~L~~~----~~tviivsHd~~~l~-~~~d~i~~L~ 220 (638)
T PRK10636 152 GGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA------VIWLEKWLKSY----QGTLILISHDRDFLD-PIVDKIIHIE 220 (638)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHH-HhcCEEEEEe
Confidence 44999999999999 9999999999999999 88888888775 469999999998774 5899999999
Q ss_pred CCeEEE-ecCcc
Q 039839 189 IQKIWD-AVPKP 199 (825)
Q Consensus 189 ~GkI~~-~g~~~ 199 (825)
+|++.. .|+..
T Consensus 221 ~G~i~~~~g~~~ 232 (638)
T PRK10636 221 QQSLFEYTGNYS 232 (638)
T ss_pred CCEEEEecCCHH
Confidence 999964 45433
No 318
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=7.3e-23 Score=240.02 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=130.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----ceeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----TTKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~~~G~~~ 83 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|... ..+||++
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~----~~p~~G~i~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKL--PPGGIVGVIGPNGAGKSTLFRMITGQ----EQPDSGTIKIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHcCC----CCCCCeEEEECCceEEEEEe
Confidence 47999999999976 56999999999 99999999999999999999999999 456677631 2478887
Q ss_pred CCC-------ccchhHHHHHHhh----------------CCChh---hhhhhhhHHHHHHHHHHHHHH---HHheecCCC
Q 039839 84 AKC-------VGIEPFTIAMDLE----------------GSDSR---ERGEDDTTFEKQSALFALAIA---DIVLINMWC 134 (825)
Q Consensus 84 ~~~-------t~~enl~l~ld~~----------------g~~~~---er~e~~~~~ErQRv~iArALa---~VLLLDEPt 134 (825)
|.. ++.+++.+..... |.... ........+||||++||+|++ ++|||||||
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 652 4566665543211 11100 011122344999999999999 999999999
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC-CeEE
Q 039839 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI-QKIW 193 (825)
Q Consensus 135 sgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~-GkI~ 193 (825)
++||+.. +..+.++|.++. + |||+||||++.+. .+||++++|++ |++.
T Consensus 472 ~~LD~~~------~~~l~~~l~~~~---~-~viivsHd~~~~~-~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 472 NDLDVET------LRALEEALLEFA---G-CAVVISHDRWFLD-RIATHILAFEGDSHVE 520 (552)
T ss_pred CCCCHHH------HHHHHHHHHHCC---C-eEEEEeCCHHHHH-HhCCEEEEEECCCeEE
Confidence 9999999 999999999872 4 7999999998774 57999999986 5765
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=7.3e-23 Score=240.25 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=130.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----ceeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----TTKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~~~G~~~ 83 (825)
.+|+++|+++.|++ +.+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|+.. ..+||++
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~i~G~----~~p~~G~i~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSL--PPGGIVGIIGPNGAGKSTLFKMITGQ----EQPDSGTIKIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCeEEEECCceEEEEEe
Confidence 47999999999976 56899999999 99999999999999999999999999 456677631 2578887
Q ss_pred CCC-------ccchhHHHHHHhh----------------CCCh---hhhhhhhhHHHHHHHHHHHHHH---HHheecCCC
Q 039839 84 AKC-------VGIEPFTIAMDLE----------------GSDS---RERGEDDTTFEKQSALFALAIA---DIVLINMWC 134 (825)
Q Consensus 84 ~~~-------t~~enl~l~ld~~----------------g~~~---~er~e~~~~~ErQRv~iArALa---~VLLLDEPt 134 (825)
|.. ++.+++.+..... |... .........+||||++||+|++ ++|||||||
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 653 4566665543211 1110 0011122344999999999999 999999999
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC-CeEE
Q 039839 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI-QKIW 193 (825)
Q Consensus 135 sgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~-GkI~ 193 (825)
++||+.. +..+.++|.++. | |+|+||||++.+. .+||+++++++ |++.
T Consensus 474 ~~LD~~~------~~~l~~~l~~~~---~-tvi~vtHd~~~~~-~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 474 NDLDVET------LRALEEALLEFP---G-CAVVISHDRWFLD-RIATHILAFEGDSQVE 522 (556)
T ss_pred CCCCHHH------HHHHHHHHHhCC---C-eEEEEECCHHHHH-HhCCEEEEEECCCeEE
Confidence 9999999 999999999872 4 7999999998773 58999999986 6765
No 320
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.88 E-value=1.1e-22 Score=242.26 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=130.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----ceeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----TTKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~~~G~~~ 83 (825)
.+|+++|+++.|++ ..+++++++.+ .+|++++|+|||||||||||++|+|+ ..|.+|... ..+||++
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~l~G~----~~p~~G~i~~~~~~~i~y~~ 388 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQV--QRGDKIALIGPNGCGKTTLLKLMLGQ----LQADSGRIHCGTKLEVAYFD 388 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEE--cCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCcEEEECCCcEEEEEe
Confidence 47999999999976 56899999999 99999999999999999999999999 556677631 2478877
Q ss_pred CCC-------ccchhHHHHHHhh----------------CCChh---hhhhhhhHHHHHHHHHHHHHH---HHheecCCC
Q 039839 84 AKC-------VGIEPFTIAMDLE----------------GSDSR---ERGEDDTTFEKQSALFALAIA---DIVLINMWC 134 (825)
Q Consensus 84 ~~~-------t~~enl~l~ld~~----------------g~~~~---er~e~~~~~ErQRv~iArALa---~VLLLDEPt 134 (825)
|.. ++.+++.+..... +.... ........+||||++||++++ ++|||||||
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 642 4566665432100 11100 011122344999999999999 999999999
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe-CCeEEEe
Q 039839 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED-IQKIWDA 195 (825)
Q Consensus 135 sgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~-~GkI~~~ 195 (825)
++||+.. +..+.+.+.++ +.|||+||||...+. .+||++++++ +|+|...
T Consensus 469 ~~LD~~~------~~~l~~~l~~~----~~tvi~vSHd~~~~~-~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 469 NDLDVET------LELLEELLDSY----QGTVLLVSHDRQFVD-NTVTECWIFEGNGKIGRY 519 (635)
T ss_pred CCCCHHH------HHHHHHHHHhC----CCeEEEEECCHHHHH-HhcCEEEEEeCCCeEEEc
Confidence 9999999 89999988876 359999999998773 5899999997 7987643
No 321
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1e-22 Score=200.24 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=139.5
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc------------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------ 74 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------ 74 (825)
.+.+++.+++|.|+. ..-+.+++|.+ .+||+++|+|.+||||||||++|.|-. .|..|.
T Consensus 4 ~PLL~V~~lsk~Yg~---~~gc~~vsF~l--~PGeVLgiVGESGSGKtTLL~~is~rl----~p~~G~v~Y~~r~~~~~d 74 (258)
T COG4107 4 KPLLSVSGLSKLYGP---GKGCRDVSFDL--YPGEVLGIVGESGSGKTTLLKCISGRL----TPDAGTVTYRMRDGQPRD 74 (258)
T ss_pred CcceeehhhhhhhCC---CcCccccceee--cCCcEEEEEecCCCcHHhHHHHHhccc----CCCCCeEEEEcCCCCchh
Confidence 358999999999987 45788999999 999999999999999999999999984 455454
Q ss_pred ------------ccceeeEEcCCCcc--------chhH-----HHHHHhhCCChhhhhh-----------------hhhH
Q 039839 75 ------------SQTTKGIWIAKCVG--------IEPF-----TIAMDLEGSDSRERGE-----------------DDTT 112 (825)
Q Consensus 75 ------------~q~~~G~~~~~~t~--------~enl-----~l~ld~~g~~~~er~e-----------------~~~~ 112 (825)
.++..|++-|++.- -.|+ ..+...+|.-..+..+ ....
T Consensus 75 l~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 75 LYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSG 154 (258)
T ss_pred HhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccch
Confidence 12445666554311 1111 1111112211111110 1122
Q ss_pred HHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 113 FEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 113 ~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
.|+||+.|||.|+ .++++||||.|||..- +..++++++.|..+.+.++++||||+..+. -.++|.++|..
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSV------QARLLDllrgLv~~l~la~viVTHDl~Var-Lla~rlmvmk~ 227 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVAR-LLADRLMVMKQ 227 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhh------HHHHHHHHHHHHHhcCceEEEEechhHHHH-HhhhcceeecC
Confidence 3999999999999 9999999999999888 999999999999999999999999999885 46999999999
Q ss_pred CeEEEecCcccccCC
Q 039839 190 QKIWDAVPKPQTLKN 204 (825)
Q Consensus 190 GkI~~~g~~~e~l~~ 204 (825)
|++++.|-.+.++.+
T Consensus 228 g~vve~GLTDrvLDD 242 (258)
T COG4107 228 GQVVESGLTDRVLDD 242 (258)
T ss_pred CCEeccccccccccC
Confidence 999999987777654
No 322
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.4e-22 Score=214.77 Aligned_cols=142 Identities=16% Similarity=0.098 Sum_probs=107.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc---ceeeEEcCCC------ccchhHHHHHHhhCCChh----
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ---TTKGIWIAKC------VGIEPFTIAMDLEGSDSR---- 104 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q---~~~G~~~~~~------t~~enl~l~ld~~g~~~~---- 104 (825)
.+|++++|+|||||||||||++|+|+ +.|.+|+.. ..++++++.. ++.+++.+.....+....
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~----~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGV----LKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 57999999999999999999999999 566777631 2567775543 445555433221111000
Q ss_pred ------------hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEE
Q 039839 105 ------------ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFV 169 (825)
Q Consensus 105 ------------er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~V 169 (825)
........+|+||++||+||+ +++||||||++||++. +..+.++|+++.++.|+|||+|
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiiiv 172 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ------RLMASKVIRRFAENNEKTAFVV 172 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEE
Confidence 001112334999999999999 9999999999999999 9999999999986558999999
Q ss_pred ecCCCCccccccCcEEEEeCC
Q 039839 170 IRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 170 THDl~~a~l~~~drvlvl~~G 190 (825)
|||++.+. .+||++++++.+
T Consensus 173 sHd~~~~~-~~~d~i~~l~~~ 192 (246)
T cd03237 173 EHDIIMID-YLADRLIVFEGE 192 (246)
T ss_pred eCCHHHHH-HhCCEEEEEcCC
Confidence 99998774 579999999754
No 323
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.88 E-value=2.6e-22 Score=235.14 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=133.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+.. ..+++++++.+ .+|+.++|+||||||||||+++|+|+ .+|.+|..
T Consensus 322 ~i~~~~v~f~y~~~--~~~l~~i~~~i--~~G~~~aivG~sGsGKSTL~~ll~g~----~~~~~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQDN--GFSVGPINLTI--KRGELLFLIGGNGSGKSTLAMLLTGL----YQPQSGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeCCC--CeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCeEEEECCEECCCCCHH
Confidence 59999999999642 46899999999 99999999999999999999999999 55666651
Q ss_pred --cceeeEEcCCCcc-----chh--------HHHHHHhhCCChh----h---hhhhhhHHHHHHHHHHHHHH---HHhee
Q 039839 76 --QTTKGIWIAKCVG-----IEP--------FTIAMDLEGSDSR----E---RGEDDTTFEKQSALFALAIA---DIVLI 130 (825)
Q Consensus 76 --q~~~G~~~~~~t~-----~en--------l~l~ld~~g~~~~----e---r~e~~~~~ErQRv~iArALa---~VLLL 130 (825)
+..+++++|+... .+| +.-..+..+.+.. + .+.....+||||++||||++ ++|||
T Consensus 394 ~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred HHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2457787776432 222 1101111222211 0 13355677999999999999 99999
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 131 DEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
||||++||++. .+.+.+.+.++.+..++|+|+|||+++... .||+++++++|++.+.
T Consensus 474 DE~ts~LD~~~------~~~i~~~l~~~~~~~~~tvi~itH~~~~~~--~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 474 DEWAADQDPHF------RREFYQVLLPLLQEMGKTIFAISHDDHYFI--HADRLLEMRNGQLSEL 530 (547)
T ss_pred ECCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEEechHHHH--hCCEEEEEECCEEEEe
Confidence 99999999999 999999887765434799999999997665 7999999999999876
No 324
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.5e-22 Score=199.36 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=116.5
Q ss_pred EEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccch-
Q 039839 12 LIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIE- 90 (825)
Q Consensus 12 l~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~e- 90 (825)
++++++.|.. ..++.++++.+ .+|++++|+||||||||||+++|+|+ ..+..|+. .+.......
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i--~~g~~~~i~G~nGsGKStll~~l~g~----~~~~~G~i------~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTL--KAGEIVALVGPNGSGKSTLLRAIAGL----LKPTSGEI------LIDGKDIAKL 66 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCccEE------EECCEEcccC
Confidence 6789999966 46899999999 99999999999999999999999999 45666652 111100000
Q ss_pred -hHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEE
Q 039839 91 -PFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL 166 (825)
Q Consensus 91 -nl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TI 166 (825)
+... ....+.-. .....|+||++||++++ +++|+||||++||.+. +..+.+.+.++.+. +.|+
T Consensus 67 ~~~~~-~~~i~~~~-----qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~ti 133 (157)
T cd00267 67 PLEEL-RRRIGYVP-----QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS------RERLLELLRELAEE-GRTV 133 (157)
T ss_pred CHHHH-HhceEEEe-----eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEE
Confidence 0000 00000000 05677999999999999 9999999999999999 99999999998776 7999
Q ss_pred EEEecCCCCccccccCcEEEEeCCe
Q 039839 167 LFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 167 L~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
|++||+++... .+||+++++++|+
T Consensus 134 i~~sh~~~~~~-~~~d~i~~l~~g~ 157 (157)
T cd00267 134 IIVTHDPELAE-LAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCHHHHH-HhCCEEEEEeCcC
Confidence 99999998775 4689999998874
No 325
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=2.7e-22 Score=240.65 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=130.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~ 83 (825)
++|+++|+++.|++. ..++.++++.+ ..|++++|+||||||||||||+|+|+ +.|.+|.. ...+||++
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i--~~Ge~i~LvG~NGsGKSTLLk~L~Gl----l~p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGI--DLDSRIAMVGPNGIGKSTILKLISGE----LQPSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEE--cCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCceEEECCceeEEEEe
Confidence 479999999999642 45899999999 99999999999999999999999999 56777763 24578887
Q ss_pred CCC----ccchhHHHHH-H---------------hhCCCh---hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCC
Q 039839 84 AKC----VGIEPFTIAM-D---------------LEGSDS---RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDI 137 (825)
Q Consensus 84 ~~~----t~~enl~l~l-d---------------~~g~~~---~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgL 137 (825)
|.. +...+..+.+ . ..|... .........+||||++||++++ ++|||||||++|
T Consensus 579 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred ccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 753 1223322211 1 111111 0011223445999999999999 999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE-EecC
Q 039839 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW-DAVP 197 (825)
Q Consensus 138 D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~-~~g~ 197 (825)
|+.. +..+.+.+.++ . | |||+||||+..+. .+||+++++++|+++ ..|+
T Consensus 659 D~~s------~~~l~~~L~~~--~-g-tvIivSHd~~~i~-~~~drv~~l~~G~i~~~~g~ 708 (718)
T PLN03073 659 DLDA------VEALIQGLVLF--Q-G-GVLMVSHDEHLIS-GSVDELWVVSEGKVTPFHGT 708 (718)
T ss_pred CHHH------HHHHHHHHHHc--C-C-EEEEEECCHHHHH-HhCCEEEEEECCEEEEeCCC
Confidence 9998 88888887764 2 4 9999999998774 579999999999997 4554
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=3.1e-22 Score=213.13 Aligned_cols=166 Identities=13% Similarity=-0.020 Sum_probs=117.7
Q ss_pred EEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----------------
Q 039839 13 IDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ---------------- 76 (825)
Q Consensus 13 ~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q---------------- 76 (825)
.+++++|+.. ..+++++++ + .+|++++|+||||||||||||+|+|+. .|..|+..
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i--~~Ge~~~IvG~nGsGKSTLlk~l~Gl~----~p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-P--REGQVLGLVGPNGIGKSTALKILAGKL----KPNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred cCcceeecCc--chhhhcCCC-C--CCCCEEEEECCCCCCHHHHHHHHhCCc----CCCCceEeeccccchhhhhccCch
Confidence 3688999652 358889984 7 999999999999999999999999994 45455421
Q ss_pred ------------ceeeEEcCCCcc-----chhHHHH-------------HHhhCCCh--hhhhhhhhHHHHHHHHHHHHH
Q 039839 77 ------------TTKGIWIAKCVG-----IEPFTIA-------------MDLEGSDS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 77 ------------~~~G~~~~~~t~-----~enl~l~-------------ld~~g~~~--~er~e~~~~~ErQRv~iArAL 124 (825)
..+++.++.... .+++... ++..|... ..........||||++||+|+
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 012333332211 1122111 11112111 001112233499999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
+ +++|+||||++||+.. +..+.++++++.++ ++|||+||||++.+. .+||++++++ |++.+.|
T Consensus 155 ~~~p~illlDEPts~LD~~~------~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~-~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 155 ARDADFYFFDEPSSYLDIKQ------RLNAARLIRELAED-DNYVLVVEHDLAVLD-YLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HhCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHHH-HhCCEEEEEC-CCCCcce
Confidence 9 9999999999999999 99999999999875 899999999998763 5799999996 6676544
No 327
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=2.8e-22 Score=257.54 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=144.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+.. ...+++++++.+ ++|+.+||+|++|||||||+++|+|+ ..|.+|+.
T Consensus 1234 ~I~f~nVsf~Y~~~-~~~vL~~isl~I--~~GekvaIVG~SGSGKSTL~~lL~rl----~~p~~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG-LPPVLHGLSFFV--SPSEKVGVVGRTGAGKSSMLNALFRI----VELEKGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEECCC-CCcccccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCceEEECCEEhhhCCHH
Confidence 49999999999542 257999999999 99999999999999999999999999 56777761
Q ss_pred --cceeeEEcCCC-----ccchhHHHH-----------HHhh-----------CCCh--hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIA-----------MDLE-----------GSDS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~-----------ld~~-----------g~~~--~er~e~~~~~ErQRv~iArAL 124 (825)
+..+++++|.+ |+.+|+... ++.. |.+. .+.+.....+||||++|||||
T Consensus 1307 ~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1307 DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred HHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 35578887764 445665432 1111 1110 122334455699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +||||||||++||.+. .+.|.+.+++.++ ++|+|+|+|+++.+. .||+|++|++|+|++.|++++.
T Consensus 1387 Lr~~~ILILDEATSaLD~~T------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~--~~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRT------DSLIQRTIREEFK--SCTMLVIAHRLNTII--DCDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred HhCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEeCCHHHHH--hCCEEEEEECCEEEEECCHHHH
Confidence 9 9999999999999999 9999999999864 799999999997775 6999999999999999998887
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
+++
T Consensus 1457 l~~ 1459 (1495)
T PLN03232 1457 LSR 1459 (1495)
T ss_pred HhC
Confidence 754
No 328
>PLN03130 ABC transporter C family member; Provisional
Probab=99.87 E-value=3.1e-22 Score=257.80 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=145.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|... ...+++++++.+ .+||.+||+|++|||||||+++|+|+ .+|.+|+.
T Consensus 1237 ~I~f~nVsf~Y~~~-~~~VL~~is~~I--~~GekVaIVGrSGSGKSTLl~lL~rl----~~p~~G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE-LPPVLHGLSFEI--SPSEKVGIVGRTGAGKSSMLNALFRI----VELERGRILIDGCDISKFGLM 1309 (1622)
T ss_pred cEEEEEEEEEeCCC-CCceecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCc----CCCCCceEEECCEecccCCHH
Confidence 59999999999652 246999999999 99999999999999999999999999 56777761
Q ss_pred --cceeeEEcCCC-----ccchhHHHH-----------HHhh-----------CCCh--hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIA-----------MDLE-----------GSDS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~-----------ld~~-----------g~~~--~er~e~~~~~ErQRv~iArAL 124 (825)
+..+|+++|.+ |+++|+... ++.. |.+. .+.+.....+||||++|||||
T Consensus 1310 ~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL 1389 (1622)
T PLN03130 1310 DLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL 1389 (1622)
T ss_pred HHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH
Confidence 35678887765 345665432 1110 1111 122334455699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +||||||||++||.+. .+.|.+.|+++++ ++|+|+|+|+++.+. .||+|++|++|+|++.|++.++
T Consensus 1390 Lr~p~ILILDEATSaLD~~T------e~~Iq~~I~~~~~--~~TvI~IAHRL~tI~--~~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1390 LRRSKILVLDEATAAVDVRT------DALIQKTIREEFK--SCTMLIIAHRLNTII--DCDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred HcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHCC--CCEEEEEeCChHHHH--hCCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999 9999999999874 799999999998775 6999999999999999998887
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
++.
T Consensus 1460 l~~ 1462 (1622)
T PLN03130 1460 LSN 1462 (1622)
T ss_pred HhC
Confidence 653
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.7e-22 Score=202.07 Aligned_cols=186 Identities=14% Similarity=0.142 Sum_probs=146.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+.+.+.|++.+|++ ...+++++|.+ ..||.-+||||||+||||+|-+|.|. .+|..|+.
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v--~~Gelr~lIGpNGAGKTT~mD~ItGK----trp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSV--DPGELRVLIGPNGAGKTTLMDVITGK----TRPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEe--cCCeEEEEECCCCCCceeeeeeeccc----CCCCcceEEEcCchhhccCC
Confidence 57999999999988 67899999999 99999999999999999999999998 45666651
Q ss_pred -----cceeeEEcC------CCccchhHHHHHHhh---------CCChhh--hhhhhhH-----------------HHHH
Q 039839 76 -----QTTKGIWIA------KCVGIEPFTIAMDLE---------GSDSRE--RGEDDTT-----------------FEKQ 116 (825)
Q Consensus 76 -----q~~~G~~~~------~~t~~enl~l~ld~~---------g~~~~e--r~e~~~~-----------------~ErQ 116 (825)
+.-+|--|| ..++++|+.+.+... .....+ +.+.... .|||
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 111232344 455677776654321 111111 1111111 1999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
++.|++-++ ++|++|||++|+-.+. ....-++++.|+. +.+|++|.|||+++. +++++|-+|+.|.+.
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~E------t~~taeLl~~la~--~hsilVVEHDM~Fvr-~~A~~VTVlh~G~VL 225 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAE------TEKTAELLKSLAG--KHSILVVEHDMGFVR-EIADKVTVLHEGSVL 225 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHH------HHHHHHHHHHHhc--CceEEEEeccHHHHH-HhhheeEEEecccee
Confidence 999999999 9999999999998787 8888999999986 589999999999985 789999999999999
Q ss_pred EecCcccccCCccccccc
Q 039839 194 DAVPKPQTLKNTPLSEFF 211 (825)
Q Consensus 194 ~~g~~~e~l~~~~l~d~f 211 (825)
++|+.+++-.+....+.|
T Consensus 226 ~EGsld~v~~dp~ViEvY 243 (249)
T COG4674 226 AEGSLDEVQNDPKVIEVY 243 (249)
T ss_pred ecccHHHhhcCcceEeee
Confidence 999999887777655554
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.87 E-value=2.9e-22 Score=255.96 Aligned_cols=185 Identities=15% Similarity=0.097 Sum_probs=144.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC--------------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-------------------- 68 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-------------------- 68 (825)
.|+++|++++|..++-.++++++++.+ .+|+.+||+||||||||||+++|.|+..+..
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i--~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSC--DSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEE--cCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 499999999996432247999999999 9999999999999999999999999954310
Q ss_pred ------------------------------CcCCCcc---------------cceeeEEcCCC-----ccchhHHHHHH-
Q 039839 69 ------------------------------DAFRGRS---------------QTTKGIWIAKC-----VGIEPFTIAMD- 97 (825)
Q Consensus 69 ------------------------------~~~~G~~---------------q~~~G~~~~~~-----t~~enl~l~ld- 97 (825)
.+.+|+. +..+|++.|.+ |+.+|+.++..
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 0135551 34578887764 55788877521
Q ss_pred -----------hh-----------CCC--hhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHH
Q 039839 98 -----------LE-----------GSD--SRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKT 150 (825)
Q Consensus 98 -----------~~-----------g~~--~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~ 150 (825)
.. |.+ -.+++.....+||||++|||||+ +||||||||++||.+. .+.
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s------E~~ 1396 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS------EKL 1396 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH------HHH
Confidence 00 111 01233344556999999999999 9999999999999999 999
Q ss_pred HHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC----CeEE-EecCcccccC
Q 039839 151 VFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI----QKIW-DAVPKPQTLK 203 (825)
Q Consensus 151 V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~----GkI~-~~g~~~e~l~ 203 (825)
|.+.|.++....++|+|+|+|++.... .||+|+++++ |+++ +.|+.++++.
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRlsti~--~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIK--RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHHHHH--hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999986323899999999997775 7999999999 8965 7998887764
No 331
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=3.6e-22 Score=197.74 Aligned_cols=185 Identities=14% Similarity=0.155 Sum_probs=145.5
Q ss_pred ceEEEEEeEEEecCcc------ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------
Q 039839 8 CCMQLIDGNGEFNVDG------LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~------l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------ 75 (825)
+.++++|++|.|.... ....++.|+|.. ..|+.+||||.||||||||.|+|+|. ..|++|+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL--~~~QTlaiIG~NGSGKSTLakMlaGm----i~PTsG~il~n~~~ 76 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTL--REGQTLAIIGENGSGKSTLAKMLAGM----IEPTSGEILINDHP 76 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEe--cCCcEEEEEccCCCcHhHHHHHHhcc----cCCCCceEEECCcc
Confidence 3689999999985422 235688899999 99999999999999999999999999 67777772
Q ss_pred ---------cceeeEEcCCCccchhHHH----HHH----hh-CCChhhhhhhhhH---------------------HHHH
Q 039839 76 ---------QTTKGIWIAKCVGIEPFTI----AMD----LE-GSDSRERGEDDTT---------------------FEKQ 116 (825)
Q Consensus 76 ---------q~~~G~~~~~~t~~enl~l----~ld----~~-g~~~~er~e~~~~---------------------~ErQ 116 (825)
...+-++||.+...-|..+ .++ +. ..+...|.+.+.+ .|||
T Consensus 77 L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQ 156 (267)
T COG4167 77 LHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQ 156 (267)
T ss_pred ccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHH
Confidence 2346677887654333322 121 11 1222233222211 1999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
||++||||. +|+|.||...+||..- +..+.+++.+|.++.|.+.|+|+.++.... .++|.|++|+.|+++
T Consensus 157 RVaLARALIL~P~iIIaDeAl~~LD~sm------rsQl~NL~LeLQek~GiSyiYV~QhlG~iK-Hi~D~viVM~EG~vv 229 (267)
T COG4167 157 RVALARALILRPKIIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHIGMIK-HISDQVLVMHEGEVV 229 (267)
T ss_pred HHHHHHHHhcCCcEEEehhhhhhccHHH------HHHHHHHHHHHHHHhCceEEEEechhhHhh-hhcccEEEEecCcee
Confidence 999999999 9999999999998777 999999999999999999999999999885 689999999999999
Q ss_pred EecCcccccCCc
Q 039839 194 DAVPKPQTLKNT 205 (825)
Q Consensus 194 ~~g~~~e~l~~~ 205 (825)
+.|++.+++.+.
T Consensus 230 E~G~t~~v~a~P 241 (267)
T COG4167 230 ERGSTADVLASP 241 (267)
T ss_pred ecCChhhhhcCC
Confidence 999998887654
No 332
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.86 E-value=6.4e-22 Score=232.25 Aligned_cols=172 Identities=14% Similarity=0.082 Sum_probs=129.5
Q ss_pred eEEEEEeEEEecCcc--ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDG--LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~--l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.|+++|++++|++.. ...+++++++.+ .+|++++|+||||||||||+++|+|+ .+|.+|+.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i--~~G~~~aivG~sGsGKSTl~~ll~g~----~~p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRI--AQGDIVFIVGENGCGKSTLAKLFCGL----YIPQEGEILLDGAAVSADS 410 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEE--cCCcEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEECCEECCCCC
Confidence 589999999996521 135899999999 99999999999999999999999999 56777751
Q ss_pred ----cceeeEEcCCCcc-----chhH---------HHHHHhhCCChh--------hhhhhhhHHHHHHHHHHHHHH---H
Q 039839 76 ----QTTKGIWIAKCVG-----IEPF---------TIAMDLEGSDSR--------ERGEDDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 ----q~~~G~~~~~~t~-----~enl---------~l~ld~~g~~~~--------er~e~~~~~ErQRv~iArALa---~ 126 (825)
+..+++++|+... .+|. .-.++..+.... +.......+||||++||||++ +
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred HHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2346777665422 2221 111111122110 011234566999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHH-HhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMM-RLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~-~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+|||||||++||++. .+.+.+.+. .+..+ ++|+|+|||+++... .||+|+++++|++++.
T Consensus 491 ililDE~ts~LD~~~------~~~i~~~l~~~~~~~-~~tiiiisH~~~~~~--~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 491 ILLFDEWAADQDPAF------KRFFYEELLPDLKRQ-GKTIIIISHDDQYFE--LADQIIKLAAGCIVKD 551 (555)
T ss_pred EEEEeCCccCCCHHH------HHHHHHHHHHHHHhC-CCEEEEEeccHHHHH--hCCEEEEEECCEEEEe
Confidence 999999999999999 999988665 45443 899999999997654 7999999999999765
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=1.5e-21 Score=248.89 Aligned_cols=212 Identities=12% Similarity=0.115 Sum_probs=154.3
Q ss_pred eEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-----------cc
Q 039839 9 CMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-----------SQ 76 (825)
Q Consensus 9 ~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-----------~q 76 (825)
+++++|+++.|+.+ ..+.+++++++.+ .+|++++|+||||||||||||+|+|+.... .+.+|+ .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i--~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g-~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWV--KPGTLTALMGASGAGKTTLLNVLAERVTTG-VITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CcceeEEEECCEECChhhh
Confidence 58999999999521 1257999999999 999999999999999999999999985310 133344 12
Q ss_pred ceeeEEcCC------CccchhHHHHHHhhC---CChhhhhh------------------------hhhHHHHHHHHHHHH
Q 039839 77 TTKGIWIAK------CVGIEPFTIAMDLEG---SDSRERGE------------------------DDTTFEKQSALFALA 123 (825)
Q Consensus 77 ~~~G~~~~~------~t~~enl~l~ld~~g---~~~~er~e------------------------~~~~~ErQRv~iArA 123 (825)
..+||++|. .++.+++.+...+.. .+..+..+ .....||||++||++
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 346888664 467888887654331 11111110 123449999999999
Q ss_pred HH---H-HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC-eEEEecCc
Q 039839 124 IA---D-IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ-KIWDAVPK 198 (825)
Q Consensus 124 La---~-VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G-kI~~~g~~ 198 (825)
|+ + ||||||||+|||... ...|++.|++++++ |+|||++||+++......+|++++|++| +++..|++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~------~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQT------AWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHH------HHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99 6 899999999999999 99999999999865 9999999999975312469999999987 99999986
Q ss_pred ccccCCccccccccccc-ccccccccchhhHHHHHH
Q 039839 199 PQTLKNTPLSEFFNVEV-TALSSYEEKEGQFKEQVA 233 (825)
Q Consensus 199 ~e~l~~~~l~d~f~~~~-~~l~h~~~~~~~F~~~v~ 233 (825)
.+. ...+.++|...- ...| ...+|.+|.-++.
T Consensus 989 ~~~--~~~~~~yf~~~G~~~~p-~~~NpAd~~ldvi 1021 (1394)
T TIGR00956 989 GEN--SHTIINYFEKHGAPKCP-EDANPAEWMLEVI 1021 (1394)
T ss_pred ccc--cchHHHHHHhcCCCCCC-CCCCHHHHHHHHh
Confidence 542 234556665211 1122 2356777766653
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=5.9e-22 Score=253.14 Aligned_cols=168 Identities=12% Similarity=0.087 Sum_probs=131.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|+...-..+++++++.+ .+|+++||+||||||||||+++|+|+ ++|.+|+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i--~~Ge~vaIvG~SGsGKSTLl~lL~gl----~~p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTL--TEGKTYAFVGESGCGKSTILKLIERL----YDPTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEE--cCCCEEEEECCCCCCHHHHHHHHHHh----ccCCCCeEEEeCCcchhhCCH
Confidence 489999999997532236999999999 99999999999999999999999999 45555541
Q ss_pred ---cceeeEEcCCC-----ccchhHHHHHHh-------------------------------------------------
Q 039839 76 ---QTTKGIWIAKC-----VGIEPFTIAMDL------------------------------------------------- 98 (825)
Q Consensus 76 ---q~~~G~~~~~~-----t~~enl~l~ld~------------------------------------------------- 98 (825)
+..+|+++|.. ++.+|+.++...
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 23467876653 567788774210
Q ss_pred --------------------hCCCh-------------hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccc
Q 039839 99 --------------------EGSDS-------------RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQA 142 (825)
Q Consensus 99 --------------------~g~~~-------------~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Ept 142 (825)
.+... .+++.....+||||++||||++ +||||||||++||++.
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s- 614 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS- 614 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH-
Confidence 00000 0111123344999999999999 9999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 143 ANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 143 a~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
...|.+.|.++.+..|+|+|+|||+++.+. .||+|++|++|
T Consensus 615 -----e~~i~~~L~~~~~~~g~TvIiIsHrls~i~--~aD~Iivl~~g 655 (1466)
T PTZ00265 615 -----EYLVQKTINNLKGNENRITIIIAHRLSTIR--YANTIFVLSNR 655 (1466)
T ss_pred -----HHHHHHHHHHHhhcCCCEEEEEeCCHHHHH--hCCEEEEEeCC
Confidence 999999999997644899999999997765 89999999986
No 335
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=7e-22 Score=200.48 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=138.4
Q ss_pred eEEEEEeEEEecCc-c-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------cc---
Q 039839 9 CMQLIDGNGEFNVD-G-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------QT--- 77 (825)
Q Consensus 9 ~Lel~nlsk~y~~~-~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------q~--- 77 (825)
|+.+.|+.+.|... + -+.++.++++.+ ..|++|.|||.||||||||+|+|+|. +.+++|+. .+
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I--~~g~FvtViGsNGAGKSTlln~iaG~----l~~t~G~I~Idg~dVtk~~ 74 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEI--AEGDFVTVIGSNGAGKSTLLNAIAGD----LKPTSGQILIDGVDVTKKS 74 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceee--cCCceEEEEcCCCccHHHHHHHhhCc----cccCCceEEECceecccCC
Confidence 47788999988532 2 467999999999 99999999999999999999999998 66777762 01
Q ss_pred ------eeeEEc--------CCCccchhHHHHHHh---hCCCh--h-hhh----hhh------------------hHHHH
Q 039839 78 ------TKGIWI--------AKCVGIEPFTIAMDL---EGSDS--R-ERG----EDD------------------TTFEK 115 (825)
Q Consensus 78 ------~~G~~~--------~~~t~~enl~l~ld~---~g~~~--~-er~----e~~------------------~~~Er 115 (825)
.++-+| +.+++.||+.+...- .|... . .+. +.+ ...||
T Consensus 75 ~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQR 154 (263)
T COG1101 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQR 154 (263)
T ss_pred HHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHH
Confidence 111223 345678888875432 12211 0 000 000 11299
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
|.+++++|.+ +||+|||-|++|||.. ...|++.-.++.++++.|.+||||+|+.+ +.|.+|.++++.|+|
T Consensus 155 QalsL~MAtl~~pkiLLLDEHTAALDPkt------a~~vm~lT~kiV~~~klTtlMVTHnm~~A-l~yG~RlImLh~G~I 227 (263)
T COG1101 155 QALSLLMATLHPPKILLLDEHTAALDPKT------AEFVMELTAKIVEEHKLTTLMVTHNMEDA-LDYGNRLIMLHSGKI 227 (263)
T ss_pred HHHHHHHHhcCCCcEEEecchhhcCCcch------HHHHHHHHHHHHHhcCCceEEEeccHHHH-HhhCCeEEEEeCCeE
Confidence 9999999998 9999999999998888 99999999999988899999999999777 469999999999999
Q ss_pred EEecCccc
Q 039839 193 WDAVPKPQ 200 (825)
Q Consensus 193 ~~~g~~~e 200 (825)
+.+...++
T Consensus 228 vlDv~g~~ 235 (263)
T COG1101 228 VLDVTGEE 235 (263)
T ss_pred EEEccccc
Confidence 99876554
No 336
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.2e-22 Score=198.93 Aligned_cols=168 Identities=13% Similarity=0.179 Sum_probs=130.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.++++++...-++ ..+++++++.+ .+||.++|.||||||||||+|+++.+ ..|++|..
T Consensus 3 lle~kq~~y~a~~---a~il~~isl~v--~~Ge~iaitGPSG~GKStllk~va~L----isp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 3 LLELKQVGYLAGD---AKILNNISLSV--RAGEFIAITGPSGCGKSTLLKIVASL----ISPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred chHHHHHHhhcCC---Ceeecceeeee--cCCceEEEeCCCCccHHHHHHHHHhc----cCCCCceEEEcCccccccChH
Confidence 4566665544444 67999999999 99999999999999999999999999 45666651
Q ss_pred --cceeeEEcCC-----CccchhHHHHHHhhCCC-hhhh------------------hhhhhHHHHHHHHHHHHHH---H
Q 039839 76 --QTTKGIWIAK-----CVGIEPFTIAMDLEGSD-SRER------------------GEDDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 --q~~~G~~~~~-----~t~~enl~l~ld~~g~~-~~er------------------~e~~~~~ErQRv~iArALa---~ 126 (825)
+..+.|+.|. .++.+|+.|+....... .+.+ ......+|+||++|+|.|. +
T Consensus 74 a~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ 153 (223)
T COG4619 74 AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPK 153 (223)
T ss_pred HHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCc
Confidence 2233444443 36688988877655321 1111 1112233999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
||||||||++||+.. .+.|-+++.+++.+...+++.||||.+.+ ...+++++.+-.|.+
T Consensus 154 ILLLDE~TsALD~~n------kr~ie~mi~~~v~~q~vAv~WiTHd~dqa-~rha~k~itl~~G~~ 212 (223)
T COG4619 154 ILLLDEITSALDESN------KRNIEEMIHRYVREQNVAVLWITHDKDQA-IRHADKVITLQPGHA 212 (223)
T ss_pred eEEecCchhhcChhh------HHHHHHHHHHHhhhhceEEEEEecChHHH-hhhhheEEEeccCcc
Confidence 999999999999998 99999999999977799999999999875 348999999988876
No 337
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.86 E-value=8.7e-22 Score=198.70 Aligned_cols=148 Identities=12% Similarity=0.047 Sum_probs=110.0
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----ccceeeEEcCCCccchhHHHHHHhhC
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR----SQTTKGIWIAKCVGIEPFTIAMDLEG 100 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~----~q~~~G~~~~~~t~~enl~l~ld~~g 100 (825)
..+++++++.+ .+|++++|+||||||||||||+|++..-. .. ..|. .+..++++.+ .-.++..+
T Consensus 8 ~~~l~~isl~i--~~G~~~~l~G~nG~GKSTLl~~il~~~G~-v~-~~~~~~~~~~~~~~~~~q--------~~~l~~~~ 75 (176)
T cd03238 8 VHNLQNLDVSI--PLNVLVVVTGVSGSGKSTLVNEGLYASGK-AR-LISFLPKFSRNKLIFIDQ--------LQFLIDVG 75 (176)
T ss_pred eeeecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhhcCCc-EE-ECCcccccccccEEEEhH--------HHHHHHcC
Confidence 56899999999 99999999999999999999999742000 00 0111 0112444333 11233334
Q ss_pred CCh---hhhhhhhhHHHHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecC
Q 039839 101 SDS---RERGEDDTTFEKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRD 172 (825)
Q Consensus 101 ~~~---~er~e~~~~~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHD 172 (825)
... ..........||||++||+|++ ++||+||||++||++. ...+.+.++++.+. |.|||+|||+
T Consensus 76 L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tvIivSH~ 148 (176)
T cd03238 76 LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD------INQLLEVIKGLIDL-GNTVILIEHN 148 (176)
T ss_pred CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 321 2233445677999999999999 6999999999999999 99999999999764 9999999999
Q ss_pred CCCccccccCcEEEEeCCeEE
Q 039839 173 KTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 173 l~~a~l~~~drvlvl~~GkI~ 193 (825)
++... .||++++|++|+..
T Consensus 149 ~~~~~--~~d~i~~l~~g~~~ 167 (176)
T cd03238 149 LDVLS--SADWIIDFGPGSGK 167 (176)
T ss_pred HHHHH--hCCEEEEECCCCCC
Confidence 97764 79999999776543
No 338
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.86 E-value=1.5e-21 Score=251.21 Aligned_cols=179 Identities=17% Similarity=0.152 Sum_probs=144.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+.+ ...+++++++.+ ++|+.+||+|++|||||||+++|+|+ .++.+|+.
T Consensus 1284 ~I~f~nVsf~Y~~~-~~~vL~~is~~I--~~GekiaIVGrTGsGKSTL~~lL~rl----~~~~~G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-LDLVLRHINVTI--HGGEKVGIVGRTGAGKSSLTLGLFRI----NESAEGEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred cEEEEEEEEEeCCC-CcccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----ccCCCCeEEECCEEccccCHH
Confidence 59999999999653 246999999999 99999999999999999999999999 56777761
Q ss_pred --cceeeEEcCCC-----ccchhHHH-----------HHHhh-----------CCCh--hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTI-----------AMDLE-----------GSDS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l-----------~ld~~-----------g~~~--~er~e~~~~~ErQRv~iArAL 124 (825)
+..+++++|.+ |+.+|+.. .++.. |.+. .+.+.....+||||++||||+
T Consensus 1357 ~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred HHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 45678887764 34556541 11111 1111 122334455699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +||||||||++||.+. .+.|.+.|++.++ ++|+|+|+|+++... .||+|++|++|+|++.|++.+.
T Consensus 1437 Lr~~~ILiLDEaTSalD~~T------e~~Iq~~l~~~~~--~~TvI~IAHRl~ti~--~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLET------DNLIQSTIRTQFE--DCTVLTIAHRLNTIM--DYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HcCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHH--hCCEEEEEECCEEEEECCHHHH
Confidence 9 9999999999999999 9999999998874 799999999997775 6999999999999999998887
Q ss_pred cCC
Q 039839 202 LKN 204 (825)
Q Consensus 202 l~~ 204 (825)
+++
T Consensus 1507 l~~ 1509 (1522)
T TIGR00957 1507 LQQ 1509 (1522)
T ss_pred HhC
Confidence 654
No 339
>PTZ00243 ABC transporter; Provisional
Probab=99.86 E-value=2.1e-21 Score=249.77 Aligned_cols=178 Identities=16% Similarity=0.171 Sum_probs=143.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|... ...+|+++++.+ .+|+.|||+|++|||||||+++|+|+ ..+.+|+.
T Consensus 1308 ~I~f~nVsf~Y~~~-~~~vL~~vsf~I--~~GekVaIVGrTGSGKSTLl~lLlrl----~~p~~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-LPLVLRGVSFRI--APREKVGIVGRTGSGKSTLLLTFMRM----VEVCGGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred eEEEEEEEEEeCCC-CCceeecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEECCEEcccCCHH
Confidence 49999999999653 246999999999 99999999999999999999999999 56666761
Q ss_pred --cceeeEEcCCC-----ccchhHHHH-----------HHhhCC-----------Ch--hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIA-----------MDLEGS-----------DS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~-----------ld~~g~-----------~~--~er~e~~~~~ErQRv~iArAL 124 (825)
+..+|+++|.+ |+.+|+... ++..|. +. .+.+.....+||||++|||||
T Consensus 1381 ~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred HHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 35678887764 445665431 111111 10 122334455699999999999
Q ss_pred H----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 125 A----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 125 a----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+ +||||||||++||.+. .+.|.+.|.+.++ ++|+|+|+|+++.+. .||+|++|++|+|++.|++.+
T Consensus 1461 L~~~~~ILlLDEATSaLD~~t------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~--~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1461 LKKGSGFILMDEATANIDPAL------DRQIQATVMSAFS--AYTVITIAHRLHTVA--QYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred hcCCCCEEEEeCCCccCCHHH------HHHHHHHHHHHCC--CCEEEEEeccHHHHH--hCCEEEEEECCEEEEECCHHH
Confidence 9 5999999999999999 9999999998865 699999999997765 799999999999999999888
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
++.
T Consensus 1531 Ll~ 1533 (1560)
T PTZ00243 1531 LVM 1533 (1560)
T ss_pred HHh
Confidence 764
No 340
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=1.4e-21 Score=227.84 Aligned_cols=162 Identities=19% Similarity=0.159 Sum_probs=127.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|++.. +++++++++.+ .+|+.++|+||||||||||+|+|+|+ .+|..|+.
T Consensus 320 ~i~~~~v~f~y~~~~-~~il~~i~l~i--~~G~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR-APALRPVSFTV--PPGERVALVGPSGAGKSTLLNLLLGF----VDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEECCCCC-cccccceeEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCcEEEECCEehhhCCHH
Confidence 599999999996521 46899999999 99999999999999999999999999 56666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH------------hhCC-----------C--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD------------LEGS-----------D--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld------------~~g~-----------~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|++.|.. ++.+|+.+... ..+. + -.+.+.....+||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 23578876654 45677665311 0011 0 012223345569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
++ +++||||||++||++. .+.+++.+.++. + ++|+|+|||+++... .||++++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~------~~~i~~~l~~~~-~-~~t~i~itH~~~~~~--~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAET------EALVTEALRALA-Q-GRTVLLVTHRLALAE--RADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHH--hCCEEEeC
Confidence 99 9999999999999999 999999999985 3 799999999997765 79999874
No 341
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=2.5e-21 Score=235.16 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=149.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
-|+++|+++.|..++-..+++++++.+ ..|+.+||+|||||||||.+.+|-.. .+|..|.
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i--~~GqTvALVG~SGsGKSTvI~LLeRf----Ydp~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSI--RAGQTVALVGPSGSGKSTVISLLERF----YDPDAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEe--cCCCEEEEECCCCCCHHHHHHHHHHh----cCCCCCeEEECCcccccCCHH
Confidence 489999999998766678999999999 99999999999999999999999988 6777776
Q ss_pred -ccceeeEEcCCC-----ccchhHHHHHHhhCCCh---------------------------hhhhhhhhHHHHHHHHHH
Q 039839 75 -SQTTKGIWIAKC-----VGIEPFTIAMDLEGSDS---------------------------RERGEDDTTFEKQSALFA 121 (825)
Q Consensus 75 -~q~~~G~~~~~~-----t~~enl~l~ld~~g~~~---------------------------~er~e~~~~~ErQRv~iA 121 (825)
.++.+|++-|.+ |..||+.++.+- .+. .+++-....+||||++||
T Consensus 1061 ~LR~~i~lVsQEP~LF~~TIrENI~YG~~~--vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFNGTIRENIAYGSEE--VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHHHhcceeccCchhhcccHHHHHhccCCC--CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence 145677776654 558898887211 121 223333344499999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||++ +||||||-|++||.|. .+.|.+.|.+... |.|.|+|.|.+.... .||.|+++++|+|++.|+.
T Consensus 1139 RAilRnPkILLLDEATSALDseS------ErvVQeALd~a~~--gRT~IvIAHRLSTIq--naD~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSES------ERVVQEALDRAME--GRTTIVIAHRLSTIQ--NADVIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhh------HHHHHHHHHHhhc--CCcEEEEecchhhhh--cCCEEEEEECCEEEecccH
Confidence 9999 9999999999999999 9999999998864 899999999998887 8999999999999999998
Q ss_pred ccccC
Q 039839 199 PQTLK 203 (825)
Q Consensus 199 ~e~l~ 203 (825)
++++.
T Consensus 1209 ~~L~~ 1213 (1228)
T KOG0055|consen 1209 DELLA 1213 (1228)
T ss_pred HHHHh
Confidence 88765
No 342
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=3.2e-21 Score=223.15 Aligned_cols=166 Identities=15% Similarity=0.099 Sum_probs=128.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----ceeeEEcC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----TTKGIWIA 84 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~~~G~~~~ 84 (825)
+|++.|+++.|+. +.++.++++.+ .+|+.+||||+||||||||||+|+|. +.|..|... .++|++.|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~--~~G~riGLvG~NGaGKSTLLkilaG~----~~~~~G~i~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTL--NPGERIGLVGRNGAGKSTLLKILAGE----LEPDSGEVTRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCccee--CCCCEEEEECCCCCCHHHHHHHHcCC----CcCCCCeEeecCCceEEEeCC
Confidence 7999999999977 78999999999 99999999999999999999999999 567778732 35788866
Q ss_pred CCccc------hhHHHHH------------------------------------------------HhhCCChh-hhhhh
Q 039839 85 KCVGI------EPFTIAM------------------------------------------------DLEGSDSR-ERGED 109 (825)
Q Consensus 85 ~~t~~------enl~l~l------------------------------------------------d~~g~~~~-er~e~ 109 (825)
..... +.+.... .-.|.+.. .....
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~ 153 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS 153 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhh
Confidence 54332 1111110 00011110 01112
Q ss_pred hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEE
Q 039839 110 DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILR 186 (825)
Q Consensus 110 ~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlv 186 (825)
...+||.||+||+||. |+|||||||+.||.+. ..-+-+.|.+. .| |+|+||||-.+.. ..|++|+-
T Consensus 154 LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~------i~WLe~~L~~~---~g-tviiVSHDR~FLd-~V~t~I~~ 222 (530)
T COG0488 154 LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES------IEWLEDYLKRY---PG-TVIVVSHDRYFLD-NVATHILE 222 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHhC---CC-cEEEEeCCHHHHH-HHhhheEE
Confidence 2344999999999999 9999999999999999 88888888764 26 9999999998875 68999999
Q ss_pred EeCCeEEE
Q 039839 187 EDIQKIWD 194 (825)
Q Consensus 187 l~~GkI~~ 194 (825)
++.|++..
T Consensus 223 ld~g~l~~ 230 (530)
T COG0488 223 LDRGKLTP 230 (530)
T ss_pred ecCCceeE
Confidence 99997654
No 343
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.85 E-value=3.7e-21 Score=247.05 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=141.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
.|+++|++++|+.. ...+++++++.+ .+|+.+||+|++|||||||+++|+|+. . .+|+
T Consensus 1217 ~I~f~nVs~~Y~~~-~~~vL~~is~~I--~~GekvaIvGrSGsGKSTLl~lL~rl~----~-~~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA-GRAVLQDLSFSV--EGGQRVGLLGRTGSGKSTLLSALLRLL----S-TEGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred eEEEEEEEEEeCCC-CcceeeccEEEE--cCCCEEEEECCCCCCHHHHHHHHhhhc----C-CCcEEEECCEEcccCCHH
Confidence 59999999999652 367999999999 999999999999999999999999994 2 4565
Q ss_pred -ccceeeEEcCCC-----ccchhHHHH-----------HHhhCC-----------Ch--hhhhhhhhHHHHHHHHHHHHH
Q 039839 75 -SQTTKGIWIAKC-----VGIEPFTIA-----------MDLEGS-----------DS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 75 -~q~~~G~~~~~~-----t~~enl~l~-----------ld~~g~-----------~~--~er~e~~~~~ErQRv~iArAL 124 (825)
.+..+++++|.+ |+++|+... ++..+. +. .+.+.....+||||++|||||
T Consensus 1289 ~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred HHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 135678887765 446666421 111111 10 112223455699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ +||||||||++||.+. .+.|.+.|++.++ ++|||+|+|.++... .||+|++|++|+|++.|++.++
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~T------e~~I~~~L~~~~~--~~TvI~IaHRl~ti~--~~DrIlvL~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVT------LQIIRKTLKQSFS--NCTVILSEHRVEALL--ECQQFLVIEGSSVKQYDSIQKL 1438 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHH--hCCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999 9999999999875 699999999997765 6999999999999999998877
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
++
T Consensus 1439 l~ 1440 (1490)
T TIGR01271 1439 LN 1440 (1490)
T ss_pred Hc
Confidence 64
No 344
>PLN03232 ABC transporter C family member; Provisional
Probab=99.85 E-value=4.2e-21 Score=246.83 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=141.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc---ccceeeEEcCC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR---SQTTKGIWIAK 85 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~---~q~~~G~~~~~ 85 (825)
.++++|+++.|+....+.+++++|+.+ ++|+.++|+||+|||||||+++|.|. +++.+|. .+..++|+.|.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i--~~Ge~vaIvG~sGSGKSTLl~lLlG~----~~~~~G~i~~~~~~Iayv~Q~ 687 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEI--PVGSLVAIVGGTGEGKTSLISAMLGE----LSHAETSSVVIRGSVAYVPQV 687 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCC----CcccCCCEEEecCcEEEEcCc
Confidence 589999999996422256899999999 99999999999999999999999999 6777764 24567887654
Q ss_pred -----CccchhHHHHHHh-----------hC-------CC------hhhhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 86 -----CVGIEPFTIAMDL-----------EG-------SD------SRERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 86 -----~t~~enl~l~ld~-----------~g-------~~------~~er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
.|+.+|+.++... .+ .+ -.+++.....+||||++||||+. +|+|||||
T Consensus 688 p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 688 SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred cccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4678888874310 01 10 01223334556999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHH-HHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 134 CHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~el-L~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
|++||.+. .+.+++. +..+. + ++|+|+|||++...+ .||+|++|++|+|.+.|+.++...
T Consensus 768 tSaLD~~t------~~~I~~~~l~~~l-~-~kT~IlvTH~~~~l~--~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 768 LSALDAHV------AHQVFDSCMKDEL-K-GKTRVLVTNQLHFLP--LMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred ccccCHHH------HHHHHHHHhhhhh-c-CCEEEEEECChhhHH--hCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999998 7777665 44433 3 799999999998765 799999999999999998777653
No 345
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.85 E-value=3.9e-21 Score=224.11 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=119.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+.+ +.+++++++.+ ++|+.++|+||||||||||+|+|+|+ .+|.+|+.
T Consensus 334 ~I~~~~vsf~Y~~~--~~vL~~isl~i--~~G~~vaIvG~SGsGKSTLl~lL~g~----~~p~~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPGS--PPVLDGVSLDL--PPGERVAILGPSGSGKSTLLMLLTGL----LDPLQGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCCC--CceeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCcEEEECCEEhhhHHHH
Confidence 59999999999653 45999999999 99999999999999999999999999 67777772
Q ss_pred -cceeeEEcCCC-----ccchhHHHHHH------------hhC-----------CCh--hhhhhhhhHHHHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAMD------------LEG-----------SDS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~ld------------~~g-----------~~~--~er~e~~~~~ErQRv~iArAL 124 (825)
+..+|+++|++ |+.+|+.++.. ..+ .+. .+++.....+||||++||||+
T Consensus 406 lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 406 LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 13678887764 45777776421 101 110 122333455699999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl 173 (825)
. +||||||||++||.+. .+.|.+.+.++.+ ++|+|+|||++
T Consensus 486 l~~~~iliLDE~TSaLD~~t------e~~I~~~l~~~~~--~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGT------ESELLEDLLAALS--GKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhcC--CCEEEEEecCC
Confidence 9 9999999999999999 9999999998753 79999999985
No 346
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=9.3e-21 Score=194.41 Aligned_cols=178 Identities=18% Similarity=0.146 Sum_probs=133.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+|+|++.+..+. +.|++++|+.+ ..||+++|+||||||||||.++|+|... ...+.|+.
T Consensus 2 ~~L~I~dLhv~v~~~--keILkgvnL~v--~~GEvhaiMGPNGsGKSTLa~~i~G~p~--Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVEGK--KEILKGVNLTV--KEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEecCc--hhhhcCcceeE--cCCcEEEEECCCCCCHHHHHHHHhCCCC--ceEecceEEECCcccccCCH
Confidence 379999999999762 48999999999 9999999999999999999999999842 44455651
Q ss_pred --cceeeEE--cCCCcc------chhHHHHHHhh---------------------CCChhh----hhhhhhHHHHHHHHH
Q 039839 76 --QTTKGIW--IAKCVG------IEPFTIAMDLE---------------------GSDSRE----RGEDDTTFEKQSALF 120 (825)
Q Consensus 76 --q~~~G~~--~~~~t~------~enl~l~ld~~---------------------g~~~~e----r~e~~~~~ErQRv~i 120 (825)
+.+.|+. ||.+.- .+.+...+... +.+..- -.+-....||+|.-|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 2344544 454322 12222222111 111100 000011129999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
+..++ ++.|||||-||||... .+.|.+.+.++..+ |.++|+|||.-.+...-..|++.+|-+|+|+.+|.
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIda------lk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDA------LKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHH------HHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCC
Confidence 99888 9999999999999999 99999999999987 99999999998766511259999999999999998
Q ss_pred c
Q 039839 198 K 198 (825)
Q Consensus 198 ~ 198 (825)
+
T Consensus 229 ~ 229 (251)
T COG0396 229 P 229 (251)
T ss_pred H
Confidence 6
No 347
>PLN03130 ABC transporter C family member; Provisional
Probab=99.84 E-value=3.8e-21 Score=247.81 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=141.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCC-Ccc--cceeeEEcCC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFR-GRS--QTTKGIWIAK 85 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~-G~~--q~~~G~~~~~ 85 (825)
.|+++|+++.|+......+++++++.+ ++|+.++|+||+|||||||+++|.|. +++.+ |.. +..++|+.|.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i--~~Ge~vaIvG~sGSGKSTLl~lLlG~----~~~~~GG~I~l~~~Iayv~Q~ 687 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDV--PVGSLVAIVGSTGEGKTSLISAMLGE----LPPRSDASVVIRGTVAYVPQV 687 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHh----hccCCCceEEEcCeEEEEcCc
Confidence 599999999996422256899999999 99999999999999999999999999 67787 663 4567887554
Q ss_pred -----CccchhHHHHHHh------------------hCCC------hhhhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 86 -----CVGIEPFTIAMDL------------------EGSD------SRERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 86 -----~t~~enl~l~ld~------------------~g~~------~~er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
.|+.+|+.++... ...+ -.+++.....+||||++||||+. +|+|||||
T Consensus 688 p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp 767 (1622)
T PLN03130 688 SWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767 (1622)
T ss_pred cccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4678888874221 0110 11233344566999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHH-HHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 134 CHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~e-lL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
|++||.+. .+.+++ .+..+. + ++|+|+|||++...+ .||+|++|++|+|.+.|+.++...
T Consensus 768 tSALD~~~------~~~I~~~~l~~~l-~-~kTvIlVTH~l~~l~--~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 768 LSALDAHV------GRQVFDKCIKDEL-R-GKTRVLVTNQLHFLS--QVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred ccccCHHH------HHHHHHHHhhHHh-c-CCEEEEEECCHhHHH--hCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999988 777765 455443 3 799999999998765 799999999999999998777653
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=99.84 E-value=1.7e-20 Score=239.16 Aligned_cols=209 Identities=15% Similarity=0.171 Sum_probs=151.7
Q ss_pred eEEEEEeEEEecCc----------cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---
Q 039839 9 CMQLIDGNGEFNVD----------GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~----------~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--- 75 (825)
.+..+|+++..... .-..+++++++.+ .+|++++|+||||||||||||+|+|.... ++.+|..
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i--~~Gel~aL~G~sGaGKTTLL~~LaG~~~~--g~~~G~I~in 942 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF--RPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIRIS 942 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE--ECCeEEEEECCCCCCHHHHHHHHcCCCCC--CcccceEEEC
Confidence 58899999887421 1136899999999 99999999999999999999999998421 1233431
Q ss_pred ---------cceeeEEcCC------CccchhHHHHHHhh---CCChhhhh-------------------------hhhhH
Q 039839 76 ---------QTTKGIWIAK------CVGIEPFTIAMDLE---GSDSRERG-------------------------EDDTT 112 (825)
Q Consensus 76 ---------q~~~G~~~~~------~t~~enl~l~ld~~---g~~~~er~-------------------------e~~~~ 112 (825)
+..+||++|. .++.|++.+..... ..+..++. .....
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 2346887664 46788887754322 11111110 11234
Q ss_pred HHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCC-ccccccCcEEEEe
Q 039839 113 FEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTK-TPLEYLEPILRED 188 (825)
Q Consensus 113 ~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~-a~l~~~drvlvl~ 188 (825)
.||||+.||++|+ +||||||||+|||... ...+++.+++++++ |.|||++||+++. + .+.+|++++|+
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~------a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i-~~~~D~vllL~ 1094 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARA------AAIVMRTVRNTVDT-GRTVVCTIHQPSIDI-FEAFDELLLMK 1094 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCCCHHH-HHhCCEEEEEc
Confidence 4999999999999 9999999999999999 99999999999876 9999999999974 4 34799999998
Q ss_pred C-CeEEEecCcccccCCccccccccc-c-cccccccccchhhHHHHH
Q 039839 189 I-QKIWDAVPKPQTLKNTPLSEFFNV-E-VTALSSYEEKEGQFKEQV 232 (825)
Q Consensus 189 ~-GkI~~~g~~~e~l~~~~l~d~f~~-~-~~~l~h~~~~~~~F~~~v 232 (825)
+ |+++..|++.+ ....+.++|.- . ....| ...+|.+|.-++
T Consensus 1095 ~gG~~v~~G~~~~--~~~~~~~yF~~~~g~~~~p-~~~NPAd~~l~v 1138 (1470)
T PLN03140 1095 RGGQVIYSGPLGR--NSHKIIEYFEAIPGVPKIK-EKYNPATWMLEV 1138 (1470)
T ss_pred CCCEEEEECCccc--ccccHHHHHHhcCCCCCCC-CCCCchhhhhhh
Confidence 6 89999998654 33455666643 1 11122 234666665555
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.84 E-value=7.5e-21 Score=227.27 Aligned_cols=161 Identities=15% Similarity=0.057 Sum_probs=126.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIA 84 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~ 84 (825)
+|+++|+++.|+++ +.+++++++.+ .+|++++|+||||||||||+++|+|+ .++..|+. +..+|+++|
T Consensus 451 ~i~~~nv~~~~~~~--~~il~~isl~i--~~Ge~~~IvG~nGsGKSTLl~lL~Gl----~~~~~G~i~~~~~~~i~~v~Q 522 (659)
T TIGR00954 451 GIKFENIPLVTPNG--DVLIESLSFEV--PSGNHLLICGPNGCGKSSLFRILGEL----WPVYGGRLTKPAKGKLFYVPQ 522 (659)
T ss_pred eEEEEeeEEECCCC--CeeeecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCCeEeecCCCcEEEECC
Confidence 69999999999532 46899999999 99999999999999999999999999 45566652 345788876
Q ss_pred CC-----ccchhHHHHHHh-------------------hCCChh-h----------hhhhhhHHHHHHHHHHHHHH---H
Q 039839 85 KC-----VGIEPFTIAMDL-------------------EGSDSR-E----------RGEDDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 85 ~~-----t~~enl~l~ld~-------------------~g~~~~-e----------r~e~~~~~ErQRv~iArALa---~ 126 (825)
.+ ++.+|+.++... .|.... . .......+||||++||||++ +
T Consensus 523 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ 602 (659)
T TIGR00954 523 RPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQ 602 (659)
T ss_pred CCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCC
Confidence 64 456676653211 011100 0 01223455999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
+|||||||++||++. ...+.+.+++. |+|+|+|||+++... .||++++++.
T Consensus 603 illLDEpts~LD~~~------~~~l~~~l~~~----~~tvI~isH~~~~~~--~~d~il~l~~ 653 (659)
T TIGR00954 603 FAILDECTSAVSVDV------EGYMYRLCREF----GITLFSVSHRKSLWK--YHEYLLYMDG 653 (659)
T ss_pred EEEEeCCccCCCHHH------HHHHHHHHHHc----CCEEEEEeCchHHHH--hCCEEEEEeC
Confidence 999999999999998 88888888762 799999999998775 8999999974
No 350
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=8.6e-21 Score=244.31 Aligned_cols=180 Identities=18% Similarity=0.164 Sum_probs=142.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC-
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK- 85 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~- 85 (825)
.++++|+++.|+... ..+++++++.+ .+|++++|+|||||||||||++|.|. +.+.+|+. ...+||+.|.
T Consensus 636 ~i~~~~~~~~~~~~~-~~~l~~isl~i--~~G~~v~IvG~~GsGKSTLl~~l~g~----~~~~~G~i~~~g~i~yv~Q~~ 708 (1522)
T TIGR00957 636 SITVHNATFTWARDL-PPTLNGITFSI--PEGALVAVVGQVGCGKSSLLSALLAE----MDKVEGHVHMKGSVAYVPQQA 708 (1522)
T ss_pred cEEEEEeEEEcCCCC-CceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CccCCcEEEECCEEEEEcCCc
Confidence 699999999996421 46899999999 99999999999999999999999999 67778873 2357777654
Q ss_pred ----CccchhHHHHHHhh-----------C-------CC------hhhhhhhhhHHHHHHHHHHHHHH---HHheecCCC
Q 039839 86 ----CVGIEPFTIAMDLE-----------G-------SD------SRERGEDDTTFEKQSALFALAIA---DIVLINMWC 134 (825)
Q Consensus 86 ----~t~~enl~l~ld~~-----------g-------~~------~~er~e~~~~~ErQRv~iArALa---~VLLLDEPt 134 (825)
.++.+|+.++.... + .+ -.+++.....+||||++||||+. +++||||||
T Consensus 709 ~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 46677877642100 0 00 01222334556999999999999 999999999
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhC-CCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 135 HDIGREQAANKPLLKTVFQVMMRLFS-PRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 135 sgLD~Epta~~~~~~~V~elL~~L~~-~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++||+.. .+.+++.+.+... ..++|+|+|||+++... .||+|++|++|+|...|+.++...
T Consensus 789 saLD~~~------~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~--~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 789 SAVDAHV------GKHIFEHVIGPEGVLKNKTRILVTHGISYLP--QVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cccCHHH------HHHHHHHHhhhhhhhcCCEEEEEeCChhhhh--hCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999 9999998875321 13789999999998876 699999999999999998777653
No 351
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.83 E-value=7.2e-21 Score=212.34 Aligned_cols=181 Identities=15% Similarity=0.116 Sum_probs=144.6
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.-.+.+++++..=.+. -++++++++|.+ ..|+.+|||||||||||||.|+|.|. ..|.+|..
T Consensus 332 ~g~L~Ve~l~~~PPg~-~~pil~~isF~l--~~G~~lgIIGPSgSGKSTLaR~lvG~----w~p~~G~VRLDga~l~qWd 404 (580)
T COG4618 332 QGALSVERLTAAPPGQ-KKPILKGISFAL--QAGEALGIIGPSGSGKSTLARLLVGI----WPPTSGSVRLDGADLRQWD 404 (580)
T ss_pred CceeeEeeeeecCCCC-CCcceecceeEe--cCCceEEEECCCCccHHHHHHHHHcc----cccCCCcEEecchhhhcCC
Confidence 3468999998854332 378999999999 99999999999999999999999999 66777762
Q ss_pred ----cceeeEEcCCC-----ccchhHHHHHHhh-----------------------CCC--hhhhhhhhhHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC-----VGIEPFTIAMDLE-----------------------GSD--SRERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 ----q~~~G~~~~~~-----t~~enl~l~ld~~-----------------------g~~--~~er~e~~~~~ErQRv~iA 121 (825)
-..+||++|.- |+.+|+.-.-+.. |.+ -.+.+......||||+++|
T Consensus 405 ~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLA 484 (580)
T COG4618 405 REQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALA 484 (580)
T ss_pred HHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHH
Confidence 24688987753 4566765432100 111 1122233344599999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||+. .+++||||-++||.+. ...+.+.|.+++++ |.|+|+|||...... .+|+|++|++|++-..|+.
T Consensus 485 RAlYG~P~lvVLDEPNsNLD~~G------E~AL~~Ai~~~k~r-G~~vvviaHRPs~L~--~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 485 RALYGDPFLVVLDEPNSNLDSEG------EAALAAAILAAKAR-GGTVVVIAHRPSALA--SVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHcCCCcEEEecCCCCCcchhH------HHHHHHHHHHHHHc-CCEEEEEecCHHHHh--hcceeeeecCChHHhcCCH
Confidence 9999 8999999999999999 99999999999886 999999999998875 7999999999999999998
Q ss_pred ccccC
Q 039839 199 PQTLK 203 (825)
Q Consensus 199 ~e~l~ 203 (825)
++++.
T Consensus 556 ~eVLa 560 (580)
T COG4618 556 EEVLA 560 (580)
T ss_pred HHHHH
Confidence 88754
No 352
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.83 E-value=8.8e-21 Score=225.22 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=129.5
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------cceeeEEcCC------C
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------QTTKGIWIAK------C 86 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------q~~~G~~~~~------~ 86 (825)
+.+++++++.+ .+|++++|+|||||||||||++|+|...+.. ..+|+. +..+||+.|. .
T Consensus 38 ~~iL~~vs~~i--~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~-~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 38 KHLLKNVSGVA--KPGELLAVMGSSGAGKTTLMNALAFRSPKGV-KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cccccCCEEEE--eCCeEEEEECCCCCCHHHHHHHHhCCCCCCC-cceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 56999999999 9999999999999999999999999843210 123431 2345776543 5
Q ss_pred ccchhHHHHHHhhC---CChhhhh--------------------------hhhhHHHHHHHHHHHHHH---HHheecCCC
Q 039839 87 VGIEPFTIAMDLEG---SDSRERG--------------------------EDDTTFEKQSALFALAIA---DIVLINMWC 134 (825)
Q Consensus 87 t~~enl~l~ld~~g---~~~~er~--------------------------e~~~~~ErQRv~iArALa---~VLLLDEPt 134 (825)
++.||+.+...... ....++. .....+||||+.||++|+ +||+|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 77888887654321 1111111 112334999999999999 999999999
Q ss_pred CCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC-CccccccCcEEEEeCCeEEEecCcccc
Q 039839 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT-KTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 135 sgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~-~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+|||... ...+++.++++.++ |+|+|+++|++. .+ .+.+|+++++++|+++..|++.+.
T Consensus 195 sgLD~~~------~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i-~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 195 SGLDSFM------AYSVVQVLKGLAQK-GKTIICTIHQPSSEL-FELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred cchhHHH------HHHHHHHHHHHHhC-CCEEEEEeCCCCHHH-HHHhceEEEeeCCeEEEECCHHHH
Confidence 9999999 99999999999875 999999999995 44 358999999999999999987654
No 353
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.4e-21 Score=209.50 Aligned_cols=178 Identities=20% Similarity=0.227 Sum_probs=140.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
.|++.|+++.|+.+ ++++.+|+|.+ .+|+.+|++||+|+||||++|+|+.+ .+..+|.
T Consensus 537 ~i~fsnvtF~Y~p~--k~vl~disF~v--~pGktvAlVG~SGaGKSTimRlLfRf----fdv~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG--KPVLSDISFTV--QPGKTVALVGPSGAGKSTIMRLLFRF----FDVNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred eEEEEEeEEecCCC--CceeecceEEe--cCCcEEEEECCCCCchhHHHHHHHHH----hhccCceEEEcCchHHHHHHH
Confidence 58999999999764 78999999999 99999999999999999999999988 4555554
Q ss_pred -ccceeeEEcCCCcc-----chhHHHHH---------------H----hhC------CChhhhhhhhhHHHHHHHHHHHH
Q 039839 75 -SQTTKGIWIAKCVG-----IEPFTIAM---------------D----LEG------SDSRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 75 -~q~~~G~~~~~~t~-----~enl~l~l---------------d----~~g------~~~~er~e~~~~~ErQRv~iArA 123 (825)
.+..+|+++|+... ..|+.+.- . ..+ +.-.||+-....+|||||+|||+
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 13567888776432 22332210 0 001 11123343444559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+. .+++|||.|++||... .+.|...+.++++ +.|-|+|-|.++.+- .+|.|+++++|+|++.|..++
T Consensus 689 iLK~P~iIlLDEATSALDT~t------ER~IQaaL~rlca--~RTtIVvAHRLSTiv--nAD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNT------ERAIQAALARLCA--NRTTIVVAHRLSTIV--NADLILVISNGRIVERGRHEE 758 (790)
T ss_pred HhcCCcEEEEcchhhhcCCcc------HHHHHHHHHHHhc--CCceEEEeeeehhee--cccEEEEEeCCeEeecCcHHH
Confidence 99 8999999999999888 9999999999997 578888999997664 699999999999999999888
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
.+..
T Consensus 759 Ll~r 762 (790)
T KOG0056|consen 759 LLKR 762 (790)
T ss_pred HHhc
Confidence 7653
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=1.8e-20 Score=225.01 Aligned_cols=170 Identities=8% Similarity=-0.009 Sum_probs=122.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC--
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK-- 85 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~-- 85 (825)
.+|+++|++++|++ ..+++++++.+ ..|+++||+|||||||||||++|+|..... -|..|+ ++++-|.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i--~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g-~p~~g~----I~~~~Q~~~ 245 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTL--AFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-IPKNCQ----ILHVEQEVV 245 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEE--CCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCCCCE----EEEEeccCC
Confidence 47999999999976 56999999999 999999999999999999999999963110 133333 2222211
Q ss_pred ---Cccchh---------------HHHHH---------------------------------------------------
Q 039839 86 ---CVGIEP---------------FTIAM--------------------------------------------------- 96 (825)
Q Consensus 86 ---~t~~en---------------l~l~l--------------------------------------------------- 96 (825)
.++.+. +.+..
T Consensus 246 g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 011000 00000
Q ss_pred ---HhhCCChh---hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEE
Q 039839 97 ---DLEGSDSR---ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLL 167 (825)
Q Consensus 97 ---d~~g~~~~---er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL 167 (825)
...|.... ........+||||++||+||+ ++|||||||++||+.. ...+.+.|+++ +.|+|
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~----~~tvi 395 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA------VLWLETYLLKW----PKTFI 395 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHc----CCEEE
Confidence 00011000 001122344999999999999 9999999999999999 99999999875 67999
Q ss_pred EEecCCCCccccccCcEEEEeCCeEE-EecCc
Q 039839 168 FVIRDKTKTPLEYLEPILREDIQKIW-DAVPK 198 (825)
Q Consensus 168 ~VTHDl~~a~l~~~drvlvl~~GkI~-~~g~~ 198 (825)
+||||.+... ..||+++++++|++. ..|+.
T Consensus 396 ivsHd~~~l~-~~~d~i~~l~~g~i~~~~g~~ 426 (718)
T PLN03073 396 VVSHAREFLN-TVVTDILHLHGQKLVTYKGDY 426 (718)
T ss_pred EEECCHHHHH-HhCCEEEEEECCEEEEeCCCH
Confidence 9999998774 579999999999996 45543
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=99.82 E-value=2.3e-20 Score=220.12 Aligned_cols=158 Identities=15% Similarity=0.017 Sum_probs=113.7
Q ss_pred eEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc------------------
Q 039839 15 GNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ------------------ 76 (825)
Q Consensus 15 lsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q------------------ 76 (825)
++++|+.. ..+|.+++ .+ .+|+++||+||||||||||||+|+|+.. |..|+..
T Consensus 79 ~~~~yg~~--~~~L~~l~-~i--~~Gev~gLvG~NGaGKSTLlkiL~G~l~----p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 79 PVHRYGVN--GFKLYGLP-IP--KEGKVTGILGPNGIGKTTAVKILSGELI----PNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred ceEEecCC--ceeEecCC-cC--CCCCEEEEECCCCCCHHHHHHHHhCCcc----CCCccccCCCcHHHHHHHhCChHHH
Confidence 46788752 34789998 78 9999999999999999999999999954 4444421
Q ss_pred ----------ceeeEEcCCC---------ccchhHHH---------HHHhhCCCh--hhhhhhhhHHHHHHHHHHHHHH-
Q 039839 77 ----------TTKGIWIAKC---------VGIEPFTI---------AMDLEGSDS--RERGEDDTTFEKQSALFALAIA- 125 (825)
Q Consensus 77 ----------~~~G~~~~~~---------t~~enl~l---------~ld~~g~~~--~er~e~~~~~ErQRv~iArALa- 125 (825)
..+++.++.. ++.+++.. .++..|... .........+|+||++||+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 0112222211 22233221 111122211 1111223445999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
++|||||||++||+.. +..++++++++.+ |.|||+||||++.+. ..||++++++++
T Consensus 230 ~p~lllLDEPts~LD~~~------~~~l~~~i~~l~~--g~tvIivsHd~~~l~-~~~D~v~vl~~~ 287 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQ------RLNVARLIRELAE--GKYVLVVEHDLAVLD-YLADNVHIAYGE 287 (590)
T ss_pred CCCEEEEECCCCCCCHHH------HHHHHHHHHHHHC--CCEEEEEeCCHHHHH-HhCCEEEEEeCC
Confidence 9999999999999999 9999999999975 899999999998774 579999999853
No 356
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=2.5e-20 Score=195.03 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHH---H--HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEE
Q 039839 111 TTFEKQSALFALAIA---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPIL 185 (825)
Q Consensus 111 ~~~ErQRv~iArALa---~--VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvl 185 (825)
...|+||++||+|++ + +||+||||++||+.. +..+.++++++.++ |.|+|+||||++.+. +||+++
T Consensus 139 SgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~------~~~l~~~l~~~~~~-g~tii~itH~~~~~~--~~d~i~ 209 (226)
T cd03270 139 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRD------NDRLIETLKRLRDL-GNTVLVVEHDEDTIR--AADHVI 209 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEeCHHHHH--hCCEEE
Confidence 445999999999999 2 999999999999999 99999999999765 999999999997764 899999
Q ss_pred EE------eCCeEEEec
Q 039839 186 RE------DIQKIWDAV 196 (825)
Q Consensus 186 vl------~~GkI~~~g 196 (825)
+| ++|+|+++|
T Consensus 210 ~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 210 DIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EeCCCccccCCEEEecC
Confidence 99 999998875
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.81 E-value=4.7e-20 Score=235.35 Aligned_cols=168 Identities=12% Similarity=-0.007 Sum_probs=130.4
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------cceeeEEcCC-----
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--------------QTTKGIWIAK----- 85 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--------------q~~~G~~~~~----- 85 (825)
+.+++++++.+ .+|++++|+||||||||||||+|+|.......+.+|+. +..+++++|.
T Consensus 74 ~~iL~~vs~~i--~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLI--KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred ceeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 45899999999 99999999999999999999999998421112344541 1236777554
Q ss_pred -CccchhHHHHHHhhC-------CChhhhh----hh----------------------hhHHHHHHHHHHHHHH---HHh
Q 039839 86 -CVGIEPFTIAMDLEG-------SDSRERG----ED----------------------DTTFEKQSALFALAIA---DIV 128 (825)
Q Consensus 86 -~t~~enl~l~ld~~g-------~~~~er~----e~----------------------~~~~ErQRv~iArALa---~VL 128 (825)
.++.+++.+...... ....+.. +. +..+|||||.||++|+ +|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 577888888765431 1111111 10 1122999999999999 999
Q ss_pred eecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC-CCccccccCcEEEEeCCeEEEecCcccc
Q 039839 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK-TKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 129 LLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl-~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++||||+|||... ...+.+.|+++.++.|+|+|+++|+. +.+ ...+|++++|++|+++..|++.+.
T Consensus 232 llDEPTsgLD~~~------~~~i~~~L~~la~~~g~tvii~~Hq~~~~i-~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSAT------ALEFIRALKTSANILDTTPLVAIYQCSQDA-YELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHH------HHHHHHHHHHHHHhcCCEEEEEecCCCHHH-HHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999 99999999999875689999999998 455 358999999999999999987654
No 358
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.7e-20 Score=182.77 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=128.2
Q ss_pred eEEEEEeEEEec----CccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----------
Q 039839 9 CMQLIDGNGEFN----VDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR---------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~----~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~---------- 74 (825)
.|.++|++|+|- ++..-+++.++++++ ..||++++=||+|+|||||||+|.|- +.+++|.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV--~aGECvvL~G~SG~GKStllr~LYaN----Y~~d~G~I~v~H~g~~v 77 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSV--NAGECVVLHGPSGSGKSTLLRSLYAN----YLPDEGQILVRHEGEWV 77 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEe--cCccEEEeeCCCCCcHHHHHHHHHhc----cCCCCceEEEEeCcchh
Confidence 699999999993 112357899999999 99999999999999999999999998 5667776
Q ss_pred -------------ccceeeEEcCCC------ccchhHHHHHHhhCCChhhhhhhhhHH---------------------H
Q 039839 75 -------------SQTTKGIWIAKC------VGIEPFTIAMDLEGSDSRERGEDDTTF---------------------E 114 (825)
Q Consensus 75 -------------~q~~~G~~~~~~------t~~enl~l~ld~~g~~~~er~e~~~~~---------------------E 114 (825)
+++++||+-|.. ...+-++-++--.|.+.......+..+ |
T Consensus 78 dl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 78 DLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred hhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 245677763332 223333334444465544333222221 9
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
+|||-|||.++ .||+|||||+.||..+ +..+.++|.+-+.+ |+++|=+-||.+.-. ..|||++.+.
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~N------r~vVveli~e~Ka~-GaAlvGIFHDeevre-~vadR~~~~~ 226 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATN------RAVVVELIREAKAR-GAALVGIFHDEEVRE-AVADRLLDVS 226 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccc------hHHHHHHHHHHHhc-CceEEEeeccHHHHH-HHhhheeecc
Confidence 99999999999 9999999999999999 99999999998765 999999999997653 4799987764
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.81 E-value=6.7e-20 Score=235.57 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=128.9
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC-----CccchhHHHHHHh
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK-----CVGIEPFTIAMDL 98 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~-----~t~~enl~l~ld~ 98 (825)
.+++++++.+ .+|++++|+|||||||||||++|+|+ +.+..|.. ...++|+.|. .++.+|+.++...
T Consensus 440 ~~l~~i~l~i--~~G~~~~I~G~~GsGKSTLl~~l~G~----~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 440 PVLKNISFKL--EKGQLLAVAGSTGSGKSSLLMMIMGE----LEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSY 513 (1490)
T ss_pred cceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCceEEECCEEEEEeCCCccCCccHHHHHHhcccc
Confidence 4799999999 99999999999999999999999999 67778873 2357777654 3668888765321
Q ss_pred h-----------CCC-------------hhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHH
Q 039839 99 E-----------GSD-------------SRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTV 151 (825)
Q Consensus 99 ~-----------g~~-------------~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V 151 (825)
. +.. -.+++.....+||||++||||++ +++|||||+++||... .+.+
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~------~~~i 587 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT------EKEI 587 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHH
Confidence 1 000 00112233455999999999999 9999999999999999 9999
Q ss_pred HHH-HHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 152 FQV-MMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 152 ~el-L~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++. +.++. + |+|+|+|||+++... .||++++|++|+|...|+..+...
T Consensus 588 ~~~~l~~~~-~-~~tvilvtH~~~~~~--~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 588 FESCLCKLM-S-NKTRILVTSKLEHLK--KADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHh-c-CCeEEEEeCChHHHH--hCCEEEEEECCEEEEEcCHHHHHh
Confidence 975 56664 3 899999999998775 699999999999999998776653
No 360
>PTZ00243 ABC transporter; Provisional
Probab=99.79 E-value=9.8e-20 Score=234.46 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=126.9
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC-----CccchhHHHHHH
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK-----CVGIEPFTIAMD 97 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~-----~t~~enl~l~ld 97 (825)
+.+++++++.+ .+|++++|+|||||||||||++|+|. +.+.+|.. ...+||++|. .++.+|+.+...
T Consensus 673 ~~iL~~isl~i--~~G~~~~IiG~nGsGKSTLL~~i~G~----~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~ 746 (1560)
T PTZ00243 673 KVLLRDVSVSV--PRGKLTVVLGATGSGKSTLLQSLLSQ----FEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDE 746 (1560)
T ss_pred ceeEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCCh
Confidence 45899999999 99999999999999999999999999 66777873 3567887665 356777766321
Q ss_pred h-----------h-----------CCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHH
Q 039839 98 L-----------E-----------GSDS--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKT 150 (825)
Q Consensus 98 ~-----------~-----------g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~ 150 (825)
. . |... .+++.....+||||++||||++ +++||||||++||+.. .+.
T Consensus 747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~------~~~ 820 (1560)
T PTZ00243 747 EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV------GER 820 (1560)
T ss_pred hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH------HHH
Confidence 0 0 1000 1112223445999999999999 9999999999999988 777
Q ss_pred HHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 151 VFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 151 V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
+++.+.....+ |+|+|+||||++.+. .||++++|++|++...|+..+.+.
T Consensus 821 i~~~~~~~~~~-~~TvIlvTH~~~~~~--~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 821 VVEECFLGALA-GKTRVLATHQVHVVP--RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHhhC-CCEEEEEeCCHHHHH--hCCEEEEEECCEEEEecCHHHHHh
Confidence 77643222223 899999999998776 799999999999999998777654
No 361
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=3.9e-19 Score=210.38 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=143.3
Q ss_pred eEEEEEeEEEecCc--cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc------------
Q 039839 9 CMQLIDGNGEFNVD--GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------ 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~--~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------ 74 (825)
.+...|++...... ..+.++++|+... .+|++.||+||+||||||||++|+|..... ...+|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~--~~Gel~AimG~SGsGKtTLL~~Lagr~~~~-~~~~G~ilvNG~~~~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTA--KPGELLAIMGPSGSGKTTLLNALAGRLNGG-LKLSGEILLNGRPRDSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEE--ecCeEEEEECCCCCCHHHHHHHHhccccCC-CcceEEEEECCccCchhh
Confidence 36677877776443 2478999999999 999999999999999999999999985421 123333
Q ss_pred ccceeeEE------cCCCccchhHHHHHHhhCC---ChhhhhhhhhH-------------------------HHHHHHHH
Q 039839 75 SQTTKGIW------IAKCVGIEPFTIAMDLEGS---DSRERGEDDTT-------------------------FEKQSALF 120 (825)
Q Consensus 75 ~q~~~G~~------~~~~t~~enl~l~ld~~g~---~~~er~e~~~~-------------------------~ErQRv~i 120 (825)
.+...||+ ++..|+.|.+.+...+.-- +..++.+++++ .||+||+|
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 13446776 4456788888887665421 33344333322 29999999
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
|.-++ .||++||||+|||.-. ...+.+.|++++++ |+|||+++|.+..--....|++++|..|+++..|+
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~s------A~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFS------ALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhh------HHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 99999 8999999999999998 99999999999998 99999999999432245799999999999999998
Q ss_pred cccc
Q 039839 198 KPQT 201 (825)
Q Consensus 198 ~~e~ 201 (825)
+.+.
T Consensus 255 ~~~~ 258 (613)
T KOG0061|consen 255 PREL 258 (613)
T ss_pred HHHH
Confidence 7653
No 362
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.1e-19 Score=178.28 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=117.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccce----------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTT---------- 78 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~---------- 78 (825)
+++.+|++..-+. ..++.+++|.+ ..||++-|.||||||||||||+|+|+ +.|..|+..-.
T Consensus 2 ~L~a~~L~~~R~e---~~lf~~L~f~l--~~Ge~~~i~G~NG~GKTtLLRilaGL----l~p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCERGE---RTLFSDLSFTL--NAGEALQITGPNGAGKTTLLRILAGL----LRPDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhccCc---ceeecceeEEE--cCCCEEEEECCCCCcHHHHHHHHHcc----cCCCCCeEEecCCCCccchhh
Confidence 5788888888776 67899999999 99999999999999999999999999 78888873100
Q ss_pred -------eeE---EcCCCccchhHHHHHHhhCC-Chhhhhhhh----------------hHHHHHHHHHHHHHH---HHh
Q 039839 79 -------KGI---WIAKCVGIEPFTIAMDLEGS-DSRERGEDD----------------TTFEKQSALFALAIA---DIV 128 (825)
Q Consensus 79 -------~G~---~~~~~t~~enl~l~ld~~g~-~~~er~e~~----------------~~~ErQRv~iArALa---~VL 128 (825)
+|- +=+..|++||+.|..++.|. +.....+.+ ...||+||+|||-++ ++.
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 010 12345779999998887764 221111111 223999999999888 999
Q ss_pred eecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 039839 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 129 LLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
|||||+++||.+. ...+-.++..-..+ |-.||++||..-
T Consensus 153 iLDEP~taLDk~g------~a~l~~l~~~H~~~-GGiVllttHq~l 191 (209)
T COG4133 153 ILDEPFTALDKEG------VALLTALMAAHAAQ-GGIVLLTTHQPL 191 (209)
T ss_pred eecCcccccCHHH------HHHHHHHHHHHhcC-CCEEEEecCCcc
Confidence 9999999999999 88888888877766 889999999873
No 363
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.79 E-value=1.9e-19 Score=221.20 Aligned_cols=178 Identities=13% Similarity=0.158 Sum_probs=149.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
..+.+.++++.|+.. +.+++++++.+ ++||+.|++|||||||||++|+|.|. ..+++|+.
T Consensus 563 ~~~~~~~L~k~y~~~--~~Av~~ls~~V--~~gecfgLLG~NGAGKtT~f~mltG~----~~~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK--DGAVRGLSFAV--PPGECFGLLGVNGAGKTTTFKMLTGE----TKPTSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecch--hhhhcceEEEe--cCCceEEEecCCCCCchhhHHHHhCC----ccCCcceEEEecCccccccc
Confidence 368999999999873 22899999999 99999999999999999999999999 45565551
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhhH--------------------HHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDTT--------------------FEKQSALFALAIA 125 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~~--------------------~ErQRv~iArALa 125 (825)
+..+||.+|. .|+.|.+.+...+.|....+..+.+.. ++|+|+.+|.|++
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh
Confidence 2347777654 567888988888888775544333222 2999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++++||||++|+||.. ++.+++++.++++. |..+|++||.++++. ..|+|+.+|.+|+++.-|++++.
T Consensus 715 g~p~vi~LDEPstGmDP~a------rr~lW~ii~~~~k~-g~aiiLTSHsMeE~E-aLCtR~aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKA------RRHLWDIIARLRKN-GKAIILTSHSMEEAE-ALCTRTAIMVIGQLRCIGSPQEL 785 (885)
T ss_pred cCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-HHhhhhheeecCeeEEecChHHH
Confidence 9999999999999999 99999999999985 669999999998885 57999999999999999987664
No 364
>PLN03140 ABC transporter G family member; Provisional
Probab=99.79 E-value=1e-19 Score=232.08 Aligned_cols=167 Identities=14% Similarity=0.182 Sum_probs=130.7
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------cceeeEEcCC------C
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------QTTKGIWIAK------C 86 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------q~~~G~~~~~------~ 86 (825)
..+++++++.+ .+|++++|+||||||||||||+|+|...+... .+|+. +..+||+.|. .
T Consensus 178 ~~IL~~vs~~i--~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~-~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGII--KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLK-VSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEE--eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCc-ceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 45899999999 99999999999999999999999999533211 14441 2456787554 5
Q ss_pred ccchhHHHHHHhhCCC----------hhhhh---------------------------h---------------------
Q 039839 87 VGIEPFTIAMDLEGSD----------SRERG---------------------------E--------------------- 108 (825)
Q Consensus 87 t~~enl~l~ld~~g~~----------~~er~---------------------------e--------------------- 108 (825)
++.|++.+.....+.. .++.. +
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 7888988876544211 01100 0
Q ss_pred -hhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC-CCccccccCc
Q 039839 109 -DDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK-TKTPLEYLEP 183 (825)
Q Consensus 109 -~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl-~~a~l~~~dr 183 (825)
.+..+|||||.||++++ ++|++||||+|||... ...+.+.|+++.+..|+|+|+++|+. ..+ ...+|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t------~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i-~~lfD~ 407 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST------TYQIVKCLQQIVHLTEATVLMSLLQPAPET-FDLFDD 407 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHH------HHHHHHHHHHHHHhcCCEEEEEecCCCHHH-HHHhhe
Confidence 01122999999999999 9999999999999999 99999999999875689999999998 455 358999
Q ss_pred EEEEeCCeEEEecCcccc
Q 039839 184 ILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 184 vlvl~~GkI~~~g~~~e~ 201 (825)
|++|++|+++..|+..+.
T Consensus 408 vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred EEEeeCceEEEeCCHHHH
Confidence 999999999999987654
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=6.1e-19 Score=204.30 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=125.2
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW 82 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~ 82 (825)
...++++|+++.|++. +.++.++++.+ ..|+.+||+||||+|||||||+|.|. ..|.+|.. .-.+||+
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i--~~g~riaiiG~NG~GKSTLlk~l~g~----~~~~~G~v~~g~~v~igyf 390 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRI--DRGDRIAIVGPNGAGKSTLLKLLAGE----LGPLSGTVKVGETVKIGYF 390 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEe--cCCCEEEEECCCCCCHHHHHHHHhhh----cccCCceEEeCCceEEEEE
Confidence 3579999999999663 67899999999 99999999999999999999999998 55667753 2457888
Q ss_pred cCCCccc-------hhHHH------------HHHhhCCChhhh---hhhhhHHHHHHHHHHHHHH---HHheecCCCCCC
Q 039839 83 IAKCVGI-------EPFTI------------AMDLEGSDSRER---GEDDTTFEKQSALFALAIA---DIVLINMWCHDI 137 (825)
Q Consensus 83 ~~~~t~~-------enl~l------------~ld~~g~~~~er---~e~~~~~ErQRv~iArALa---~VLLLDEPtsgL 137 (825)
-|+.... +++.- .+.-.+.++... ......+||-|++||+.+. .||||||||+.|
T Consensus 391 ~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL 470 (530)
T COG0488 391 DQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL 470 (530)
T ss_pred EehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence 6654221 11111 011112222211 1223445999999999999 999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 138 D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
|.+. +..+.+.|.+. .-||||||||..+.. ..|++++.+.+
T Consensus 471 Di~s------~~aLe~aL~~f----~Gtvl~VSHDr~Fl~-~va~~i~~~~~ 511 (530)
T COG0488 471 DIES------LEALEEALLDF----EGTVLLVSHDRYFLD-RVATRIWLVED 511 (530)
T ss_pred CHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHH-hhcceEEEEcC
Confidence 9999 88888888775 469999999998875 57999999886
No 366
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=1.1e-18 Score=168.50 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=120.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------c
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------S 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------~ 75 (825)
|+.++|++.+.++ .-.+-++|+++ .+|||+.|+||+||||||||..+.|....... .+|+ .
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Ti--a~GeivtlMGPSGcGKSTLls~~~G~La~~F~-~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTI--AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS-CTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEe--cCCcEEEEECCCCccHHHHHHHHHhhcccCcc-eeeEEEECCeeccccchh
Confidence 6899999988876 56788899999 99999999999999999999999997532222 2243 2
Q ss_pred cceeeEEcC------CCccchhHHHHH--HhhCCChhhhhh-----------------hhhHHHHHHHHHHHHHH---HH
Q 039839 76 QTTKGIWIA------KCVGIEPFTIAM--DLEGSDSRERGE-----------------DDTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 76 q~~~G~~~~------~~t~~enl~l~l--d~~g~~~~er~e-----------------~~~~~ErQRv~iArALa---~V 127 (825)
|+.+|++|| +.++.+|+.|.+ ++.|...+.... .....||-||++-|+|. +.
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~ 155 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA 155 (213)
T ss_pred hhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce
Confidence 567888855 456777877654 233321111111 11122999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
++||||++.||..- +..+.+....-....|...|+||||+..++ ...||+-+
T Consensus 156 lLLDEPFS~LD~AL------R~qfR~wVFs~~r~agiPtv~VTHD~~Dvp--agsrVie~ 207 (213)
T COG4136 156 LLLDEPFSRLDVAL------RDQFRQWVFSEVRAAGIPTVQVTHDLQDVP--AGSRVIEM 207 (213)
T ss_pred eeeCCchhHHHHHH------HHHHHHHHHHHHHhcCCCeEEEecccccCC--CCCeeeee
Confidence 99999999999765 777777664444445999999999998887 55566544
No 367
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-18 Score=189.04 Aligned_cols=178 Identities=19% Similarity=0.180 Sum_probs=137.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.+..+++++.|+.. +++++++++.+ ..|+.++|+||+|+||||++++|+.. +++.+|..
T Consensus 262 ~v~F~~V~F~y~~~--r~iL~~isf~i--~~g~tvAiVg~SG~gKsTI~rllfRF----yD~~sG~I~id~qdir~vtq~ 333 (497)
T COG5265 262 AVAFINVSFAYDPR--RPILNGISFTI--PLGKTVAIVGESGAGKSTILRLLFRF----YDVNSGSITIDGQDIRDVTQQ 333 (497)
T ss_pred eEEEEEEEeecccc--chhhcCccccc--cCccEEEEEeCCCCcHHHHHHHHHHH----hCCcCceEEEcchhHHHhHHH
Confidence 37889999999764 78999999999 99999999999999999999999999 66666761
Q ss_pred --cceeeEEcCCCcc-----chhHHHHHHh-----------------------hC--CChhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKCVG-----IEPFTIAMDL-----------------------EG--SDSRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~t~-----~enl~l~ld~-----------------------~g--~~~~er~e~~~~~ErQRv~iArA 123 (825)
+.-+|+++|.... ..|+.++-.. .| +.-.||+-.+...|||||+|||+
T Consensus 334 slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 334 SLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred HHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHH
Confidence 2456777765322 2222221000 00 00112222223339999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+. .+|++||.|++||... .+.+...++++.+ |.|-|++-|.+.... -+|.|+++++|+|++.|+..+
T Consensus 414 ilk~p~il~~deatsaldt~t------e~~iq~~l~~~~~--~rttlviahrlsti~--~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 414 ILKNPPILILDEATSALDTHT------EQAIQAALREVSA--GRTTLVIAHRLSTII--DADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhH------HHHHHHHHHHHhC--CCeEEEEeehhhhcc--CCceEEEeeCCEEEecCcHHH
Confidence 99 9999999999999888 9999999999874 788889999996554 599999999999999999887
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 484 ll~~ 487 (497)
T COG5265 484 LLAA 487 (497)
T ss_pred HHHc
Confidence 7654
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.76 E-value=2e-18 Score=177.21 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=104.9
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC-----CcC------CCc------ccceeeEEcCCCccc--
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM-----DAF------RGR------SQTTKGIWIAKCVGI-- 89 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~-----~~~------~G~------~q~~~G~~~~~~t~~-- 89 (825)
.++++.+ .+| +++|+||||||||||+++|.|+..+.. .+. .|. ....+|+++|+....
T Consensus 14 ~~~~l~~--~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~ 90 (197)
T cd03278 14 DKTTIPF--PPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS 90 (197)
T ss_pred CCeeeec--CCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee
Confidence 4567777 788 999999999999999999999842210 000 011 124578888865432
Q ss_pred ----hhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHh
Q 039839 90 ----EPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 158 (825)
Q Consensus 90 ----enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L 158 (825)
+.+...++..+. ...........||||++||++++ +++|+|||+++||+.. ...+.+.+.++
T Consensus 91 ~~~~~~~~~~l~~~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~------~~~l~~~l~~~ 163 (197)
T cd03278 91 IISQGDVSEIIEAPGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN------VERFARLLKEF 163 (197)
T ss_pred EEehhhHHHHHhCCCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH------HHHHHHHHHHh
Confidence 112222222111 11122334566999999999984 6999999999999999 99999999998
Q ss_pred hCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 159 FSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 159 ~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
.+ +.|||+||||++.+. .||+++.+..
T Consensus 164 ~~--~~tiIiitH~~~~~~--~~d~v~~~~~ 190 (197)
T cd03278 164 SK--ETQFIVITHRKGTME--AADRLYGVTM 190 (197)
T ss_pred cc--CCEEEEEECCHHHHh--hcceEEEEEe
Confidence 64 689999999997664 7999998863
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=2.5e-18 Score=213.40 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=143.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-------------- 74 (825)
-|+++|++.+|... +..+|+++++.+ .+||.|||+|..|||||||+++|+.+ ..+.+|+
T Consensus 1138 ~I~f~~~~~RYrp~-lp~VLk~is~~I--~p~eKVGIVGRTGaGKSSL~~aLFRl----~e~~~G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN-LPLVLKGISFTI--KPGEKVGIVGRTGAGKSSLILALFRL----VEPAEGEILIDGVDISKIGLH 1210 (1381)
T ss_pred eEEEEEeEEEeCCC-CcchhcCceEEE--cCCceEEEeCCCCCCHHHHHHHHHHh----cCccCCeEEEcCeecccccHH
Confidence 59999999999763 578999999999 99999999999999999999999999 5566676
Q ss_pred -ccceeeEEcCCCcc-----chhHH-----------HHHHhh-----------CCCh--hhhhhhhhHHHHHHHHHHHHH
Q 039839 75 -SQTTKGIWIAKCVG-----IEPFT-----------IAMDLE-----------GSDS--RERGEDDTTFEKQSALFALAI 124 (825)
Q Consensus 75 -~q~~~G~~~~~~t~-----~enl~-----------l~ld~~-----------g~~~--~er~e~~~~~ErQRv~iArAL 124 (825)
.+.++++++|.+.. +.|+. ..++.. |.+. .|.++...-+|||.+++||||
T Consensus 1211 dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred HHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 14567788877543 22211 111110 1111 122333344599999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
. +||+|||.|+++|.+. -..|.+.|++-++ ++|||.|-|.++.+- -||||++|++|+|++.++|.+.
T Consensus 1291 Lr~skILvLDEATAsVD~~T------D~lIQ~tIR~~F~--dcTVltIAHRl~TVm--d~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPET------DALIQKTIREEFK--DCTVLTIAHRLNTVM--DSDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred hccCCEEEEecccccCChHH------HHHHHHHHHHHhc--CCeEEEEeeccchhh--hcCeEEEeeCCeEeecCChHHH
Confidence 9 9999999999999998 8889999999887 699999999997663 5999999999999999999888
Q ss_pred cCCc
Q 039839 202 LKNT 205 (825)
Q Consensus 202 l~~~ 205 (825)
+++.
T Consensus 1361 l~~~ 1364 (1381)
T KOG0054|consen 1361 LSDK 1364 (1381)
T ss_pred HhCC
Confidence 7653
No 370
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.75 E-value=1.8e-19 Score=177.62 Aligned_cols=189 Identities=15% Similarity=0.126 Sum_probs=136.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc-----------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----------- 76 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----------- 76 (825)
++++++|+...-. +-.++..+ ..|+++-+||||||||||||-.++|+. +.+|..+
T Consensus 2 ~l~qln~v~~~tR-------L~plS~qv--~aGe~~HliGPNGaGKSTLLA~lAGm~-----~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 2 ILMQLNDVAESTR-------LGPLSGEV--RAGEILHLVGPNGAGKSTLLARMAGMT-----SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred ceeeecccccccc-------cccccccc--ccceEEEEECCCCccHHHHHHHHhCCC-----CCCceEEECCcchhHHhH
Confidence 4688888876532 22334455 677799999999999999999999984 4455521
Q ss_pred ----ceeeEEcCCCc------c-------------chhHHHHHHhhCCChhhh--hhhhhHHHHHHHHHHHHHH------
Q 039839 77 ----TTKGIWIAKCV------G-------------IEPFTIAMDLEGSDSRER--GEDDTTFEKQSALFALAIA------ 125 (825)
Q Consensus 77 ----~~~G~~~~~~t------~-------------~enl~l~ld~~g~~~~er--~e~~~~~ErQRv~iArALa------ 125 (825)
+...|+-|+.+ + ...+..+.+..+.+.+-- .......|.|||-+|....
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~ 147 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA 147 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCC
Confidence 01112211111 1 111111222222222111 1112334999999997765
Q ss_pred ----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 126 ----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 126 ----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
++||+|||.++||..+ ...+..++.+++.. |.+|||.+||++.+ +..+|+++++..|++...|..+++
T Consensus 148 NP~~~LLllDEP~~~LDvAQ------~~aLdrll~~~c~~-G~~vims~HDLNhT-LrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 148 NPAGQLLLLDEPMNSLDVAQ------QSALDRLLSALCQQ-GLAIVMSSHDLNHT-LRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred CccceeEEecCCCcchhHHH------HHHHHHHHHHHHhC-CcEEEEeccchhhH-HHHHHHHHHHhcCeEEeecchhhh
Confidence 8999999999999999 88899999999987 99999999999888 568999999999999999999999
Q ss_pred cCCcccccccccccccc
Q 039839 202 LKNTPLSEFFNVEVTAL 218 (825)
Q Consensus 202 l~~~~l~d~f~~~~~~l 218 (825)
+....+...|++.|..+
T Consensus 220 lt~~vL~q~fg~~frr~ 236 (248)
T COG4138 220 LTPPVLAQAYGMNFRRL 236 (248)
T ss_pred cChHHHHHHhccceEEE
Confidence 99999999999887643
No 371
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=3.4e-18 Score=212.30 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=144.3
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEE--
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIW-- 82 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~-- 82 (825)
...+++.|.+++.+.....+.+++||+.+ ++|+.+||+||-|||||+||.+|.|- |...+|.. ...++|+
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i--~~G~lvaVvG~vGsGKSSLL~AiLGE----m~~~sG~v~v~gsiaYv~Q 589 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEI--KKGQLVAVVGPVGSGKSSLLSAILGE----MPKLSGSVAVNGSVAYVPQ 589 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEe--cCCCEEEEECCCCCCHHHHHHHHhcC----cccccceEEEcCeEEEecc
Confidence 34699999999986533355899999999 99999999999999999999999998 78888873 3446665
Q ss_pred ---cCCCccchhHHHHHHh------------------hCC---Ch---hhhhhhhhHHHHHHHHHHHHHH---HHheecC
Q 039839 83 ---IAKCVGIEPFTIAMDL------------------EGS---DS---RERGEDDTTFEKQSALFALAIA---DIVLINM 132 (825)
Q Consensus 83 ---~~~~t~~enl~l~ld~------------------~g~---~~---~er~e~~~~~ErQRv~iArALa---~VLLLDE 132 (825)
+++.|+.+|+.|+..+ .-. |. .|++-...++||||+++|||+. ||.|||.
T Consensus 590 ~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred ccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 4567889999986322 111 11 2333334566999999999999 9999999
Q ss_pred CCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 133 PtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
|++++|... -+.+++-.....-+ ++|+|+|||.++..+ .||.|++|++|+|...|+.++..
T Consensus 670 plSAVDahv------g~~if~~ci~~~L~-~KT~ILVTHql~~L~--~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 670 PLSAVDAHV------GKHIFEECIRGLLR-GKTVILVTHQLQFLP--HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred cchhhhHhh------hHHHHHHHHHhhhc-CCEEEEEeCchhhhh--hCCEEEEecCCeEecccCHHHHH
Confidence 999999888 66666655443333 799999999888876 89999999999999999988765
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.74 E-value=2.8e-18 Score=177.76 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=109.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCC--c------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG--R------------ 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G--~------------ 74 (825)
.|+++|+. .|... ..++|.. +.+|++++|+|||||||||||++|.+..+ ++..+ .
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~-~~~~~~~~i~G~NGsGKSTll~~i~~~l~---g~~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTG-LDNNGLFLICGPTGAGKSTILDAITYALY---GKTPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCC-CCccCEEEEECCCCCCHHHHHHHheeeEe---cCccccccchhHHHHhcCCC
Confidence 47888887 66441 3345543 24588999999999999999999986431 11111 0
Q ss_pred ccceeeEEcCCCcc---------ch---hHHHH-HHhhCCCh--hhhhhhhhHHHHHHHHHHHHHH-------------H
Q 039839 75 SQTTKGIWIAKCVG---------IE---PFTIA-MDLEGSDS--RERGEDDTTFEKQSALFALAIA-------------D 126 (825)
Q Consensus 75 ~q~~~G~~~~~~t~---------~e---nl~l~-ld~~g~~~--~er~e~~~~~ErQRv~iArALa-------------~ 126 (825)
....+++.++.... .+ ..... +...+... ..........|+||++||+|++ +
T Consensus 74 ~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~ 153 (213)
T cd03279 74 DTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLE 153 (213)
T ss_pred ccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCC
Confidence 11234555543211 00 11000 00000000 0111223455999999999997 4
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
++|+||||++||+.. ...+.+.+.++.++ +.|+|+||||++.+. ..|++++++++|.
T Consensus 154 ~lllDEp~~~lD~~~------~~~~~~~l~~~~~~-~~tii~itH~~~~~~-~~~~~i~~~~~~~ 210 (213)
T cd03279 154 ALFIDEGFGTLDPEA------LEAVATALELIRTE-NRMVGVISHVEELKE-RIPQRLEVIKTPG 210 (213)
T ss_pred EEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEECchHHHH-hhCcEEEEEecCC
Confidence 799999999999999 99999999999765 899999999998774 5799999999875
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.72 E-value=1.3e-17 Score=178.19 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 110 DTTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 110 ~~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
....|+||+.||++|+ +++||||||+|||+.. ...+.+++.++.++ |.|+|+||||++... .||+
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~tvIiitH~~~~i~--~aD~ 240 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD------VKKLLEVLQRLVDK-GNTVVVIEHNLDVIK--CADW 240 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH--hCCE
Confidence 3455999999999999 3999999999999999 99999999999865 899999999998775 6999
Q ss_pred EEEE------eCCeEEEecCc
Q 039839 184 ILRE------DIQKIWDAVPK 198 (825)
Q Consensus 184 vlvl------~~GkI~~~g~~ 198 (825)
++.| ++|+|++.|++
T Consensus 241 ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 241 IIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEecCCcCCCCCEEEEeCCC
Confidence 9999 79999998863
No 374
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.71 E-value=1.1e-17 Score=188.02 Aligned_cols=168 Identities=13% Similarity=0.122 Sum_probs=121.8
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCC
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKC 86 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~ 86 (825)
.+.+.+.|+++.|.++ ..+..+++|++ ..++.+++|||||+|||||||++.|. +.|..|......+..++..
T Consensus 387 ~pvi~~~nv~F~y~~~--~~iy~~l~fgi--d~~srvAlVGPNG~GKsTLlKl~~gd----l~p~~G~vs~~~H~~~~~y 458 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN--PMIYKKLNFGI--DLDSRVALVGPNGAGKSTLLKLITGD----LQPTIGMVSRHSHNKLPRY 458 (614)
T ss_pred CCeEEEeccccCCCCc--chhhhhhhccc--CcccceeEecCCCCchhhhHHHHhhc----cccccccccccccccchhh
Confidence 4679999999999764 26888999999 99999999999999999999999999 5666676433333333211
Q ss_pred cc---------chhHHHHHHh----------------hCCChhhh---hhhhhHHHHHHHHHHHHHH---HHheecCCCC
Q 039839 87 VG---------IEPFTIAMDL----------------EGSDSRER---GEDDTTFEKQSALFALAIA---DIVLINMWCH 135 (825)
Q Consensus 87 t~---------~enl~l~ld~----------------~g~~~~er---~e~~~~~ErQRv~iArALa---~VLLLDEPts 135 (825)
.. ...+.+.+.. +|..+... -..+...||.||+||+.+. .+|||||||+
T Consensus 459 ~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn 538 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN 538 (614)
T ss_pred hhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence 00 0112222222 22222111 1112334999999999999 9999999999
Q ss_pred CCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 136 gLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
+||.++ ...+.+.|.+. ..++|+||||.-++. .+++++.+..+|.+.
T Consensus 539 hLDi~t------id~laeaiNe~----~Ggvv~vSHDfrlI~-qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 539 HLDIET------IDALAEAINEF----PGGVVLVSHDFRLIS-QVAEEIWVCENGTVT 585 (614)
T ss_pred CCCchh------HHHHHHHHhcc----CCceeeeechhhHHH-HHHHHhHhhccCcee
Confidence 999999 88888887764 458999999997774 578888888777664
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.68 E-value=1.5e-16 Score=167.30 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC
Q 039839 110 DTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 110 ~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d 182 (825)
....|+||++||+|++ +++|+||||++||+.. ...+++.++++.+ ++++|++||+.+.. ..||
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~------~~~~~~~l~~~~~--~~~ii~~~h~~~~~--~~~d 228 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQY------RTAVANMIKELSD--GAQFITTTFRPELL--EVAD 228 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHH--hhCC
Confidence 3445999999999993 7999999999999999 9999999999864 78889888887654 4899
Q ss_pred cEEEEe
Q 039839 183 PILRED 188 (825)
Q Consensus 183 rvlvl~ 188 (825)
+++++.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999886
No 376
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.68 E-value=9.8e-17 Score=165.54 Aligned_cols=134 Identities=14% Similarity=0.172 Sum_probs=93.1
Q ss_pred EEEEECCCCCChhHHHHHHH----hcccccCCc--------CCCcccceeeEEcCCC-----------ccchhHHHHHHh
Q 039839 42 VVAIMGPQSSGKSTLMNHLF----HTNFREMDA--------FRGRSQTTKGIWIAKC-----------VGIEPFTIAMDL 98 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~----Gl~~~~~~~--------~~G~~q~~~G~~~~~~-----------t~~enl~l~ld~ 98 (825)
+++|+|||||||||||++|. |..++.... ..+.....+++.++.. ++.+++.+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~--- 100 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC--- 100 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee---
Confidence 89999999999999999995 664321110 0011123455666554 233333221
Q ss_pred hCCChhhh-------hhhhhHHHHHH------HHHHHHHH---HHheecCCCCCCccccccCHHHHH-HHHHHHHHhhCC
Q 039839 99 EGSDSRER-------GEDDTTFEKQS------ALFALAIA---DIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSP 161 (825)
Q Consensus 99 ~g~~~~er-------~e~~~~~ErQR------v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~-~V~elL~~L~~~ 161 (825)
...+. .......|+|| ++||++++ +++|+|||+++||++. .. .+.+++.++.++
T Consensus 101 ---~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~------~~~~l~~~l~~~~~~ 171 (204)
T cd03240 101 ---HQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN------IEESLAEIIEERKSQ 171 (204)
T ss_pred ---chHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH------HHHHHHHHHHHHHhc
Confidence 11111 11223449996 67777887 9999999999999999 99 999999999765
Q ss_pred CCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 162 RKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 162 ~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
.+.|+|+||||++... .||+++.++.
T Consensus 172 ~~~~iiiitH~~~~~~--~~d~i~~l~~ 197 (204)
T cd03240 172 KNFQLIVITHDEELVD--AADHIYRVEK 197 (204)
T ss_pred cCCEEEEEEecHHHHh--hCCEEEEEee
Confidence 4789999999997765 6999998864
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.67 E-value=2.2e-17 Score=171.35 Aligned_cols=69 Identities=9% Similarity=0.046 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 111 TTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 111 ~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
...||||++||+|++ +++|+||||+|||+.. +..+.+.+.++.+ +.|+|++||+.+... .||+
T Consensus 129 S~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~------~~~l~~~l~~~~~--~~~~iivs~~~~~~~--~~d~ 198 (212)
T cd03274 129 SGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRN------VSIVANYIKERTK--NAQFIVISLRNNMFE--LADR 198 (212)
T ss_pred CHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHH------HHHHHHHHHHHcC--CCEEEEEECcHHHHH--hCCE
Confidence 445999999999884 7999999999999999 9999999999853 678999999976554 8999
Q ss_pred EEEEeC
Q 039839 184 ILREDI 189 (825)
Q Consensus 184 vlvl~~ 189 (825)
+++|..
T Consensus 199 v~~~~~ 204 (212)
T cd03274 199 LVGIYK 204 (212)
T ss_pred EEEEEe
Confidence 999874
No 378
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.5e-16 Score=173.16 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=123.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCcc
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVG 88 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~ 88 (825)
.|+++|+.+.|... .--+.-||+.+ .+||+|-|+|.||||||||++.|.|+ ..|.+|+..- .|--....+.
T Consensus 322 ~lelrnvrfay~~~--~FhvgPiNl~i--krGelvFliG~NGsGKST~~~LLtGL----~~PqsG~I~l-dg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDN--AFHVGPINLTI--KRGELVFLIGGNGSGKSTLAMLLTGL----YQPQSGEILL-DGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcc--cceecceeeEE--ecCcEEEEECCCCCcHHHHHHHHhcc----cCCCCCceeE-CCccCCCCCH
Confidence 58999999999652 23356789999 99999999999999999999999999 6788787310 0000000000
Q ss_pred ch----------hHHHHHHhhCCCh-------------------------hhhhhhhhHHHHHHHHHHHHHH---HHhee
Q 039839 89 IE----------PFTIAMDLEGSDS-------------------------RERGEDDTTFEKQSALFALAIA---DIVLI 130 (825)
Q Consensus 89 ~e----------nl~l~ld~~g~~~-------------------------~er~e~~~~~ErQRv~iArALa---~VLLL 130 (825)
.+ ..-+.-++.|.+. +-..-+...+||+|+++-.|++ +|+++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 00 0000111112111 1111112233999999999999 99999
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEec
Q 039839 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 131 DEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g 196 (825)
|||.++-||.- ++.+++.+.-+-+++|+||+.||||-.--. .+||++.+.+|++++.-
T Consensus 473 DEWAADQDPaF------RR~FY~~lLp~LK~qGKTI~aIsHDd~YF~--~ADrll~~~~G~~~e~t 530 (546)
T COG4615 473 DEWAADQDPAF------RREFYQVLLPLLKEQGKTIFAISHDDHYFI--HADRLLEMRNGQLSELT 530 (546)
T ss_pred ehhhccCChHH------HHHHHHHHhHHHHHhCCeEEEEecCchhhh--hHHHHHHHhcCceeecc
Confidence 99999999888 999999998887778999999999975443 69999999999998753
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.64 E-value=3.2e-16 Score=176.45 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=120.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEE------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIW------ 82 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~------ 82 (825)
.+.+.++++.|.+ ..++.++.+.+ ..|+.+||+|+|||||||+|++|.|...| .++..+-..-..++.
T Consensus 75 dvk~~sls~s~~g---~~l~kd~~~El--~~g~rygLiG~nG~Gkst~L~~i~~~e~P-~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFHG---VELIKDVTLEL--NRGRRYGLIGPNGSGKSTFLRAIAGREVP-IPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cceeeeeeeccCC---ceeeeeeeEEe--cCCceEEEEcCCCCcHhHHHHHHhcCCCC-CCcccchhhhcccCCCchHHH
Confidence 5899999999977 67899999999 99999999999999999999999998643 111111100000000
Q ss_pred ----c-CCCccchhHHHHHHhh--------------------------------------CCChh---hhhhhhhHHHHH
Q 039839 83 ----I-AKCVGIEPFTIAMDLE--------------------------------------GSDSR---ERGEDDTTFEKQ 116 (825)
Q Consensus 83 ----~-~~~t~~enl~l~ld~~--------------------------------------g~~~~---er~e~~~~~ErQ 116 (825)
+ ........+....+-. |.... ....+...++|.
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm 228 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM 228 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence 0 0000000000000000 00000 000011122999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCe-E
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQK-I 192 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk-I 192 (825)
|+++||+|. ++|||||||++||++. ...+-+.|.+.-. .++|+++|+-+..+ ..|.+|+-+++++ +
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA------~~wLee~L~k~d~---~~lVi~sh~QDfln-~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEA------IVWLEEYLAKYDR---IILVIVSHSQDFLN-GVCTNIIHLDNKKLI 298 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHhccC---ceEEEEecchhhhh-hHhhhhheeccccee
Confidence 999999999 9999999999999999 8888888776532 28999999999886 6899999999999 6
Q ss_pred EEecCcccc
Q 039839 193 WDAVPKPQT 201 (825)
Q Consensus 193 ~~~g~~~e~ 201 (825)
...|+.+..
T Consensus 299 ~y~Gnydqy 307 (614)
T KOG0927|consen 299 YYEGNYDQY 307 (614)
T ss_pred eecCCHHHH
Confidence 677876553
No 380
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=7.3e-16 Score=168.74 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=115.6
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW 82 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~ 82 (825)
.+.|-+.|+++.|.+. +++...++|++ .-...++|+||||.||||||++|.|- +.|..|.. +-.+|.+
T Consensus 584 PPvLGlH~VtFgy~gq--kpLFkkldFGi--DmdSRiaIVGPNGVGKSTlLkLL~Gk----l~P~~GE~RKnhrL~iG~F 655 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ--KPLFKKLDFGI--DMDSRIAIVGPNGVGKSTLLKLLIGK----LDPNDGELRKNHRLRIGWF 655 (807)
T ss_pred CCeeecccccccCCCC--Cchhhcccccc--cccceeEEECCCCccHHHHHHHHhcC----CCCCcchhhccceeeeech
Confidence 3689999999999553 66777888888 77779999999999999999999998 67777763 3456655
Q ss_pred cCCC----ccch-hHHHHHHhhCCChhhhhhh-----------------hhHHHHHHHHHH-HHHH--HHheecCCCCCC
Q 039839 83 IAKC----VGIE-PFTIAMDLEGSDSRERGED-----------------DTTFEKQSALFA-LAIA--DIVLINMWCHDI 137 (825)
Q Consensus 83 ~~~~----t~~e-nl~l~ld~~g~~~~er~e~-----------------~~~~ErQRv~iA-rALa--~VLLLDEPtsgL 137 (825)
-|+. +..+ ...+....+..+..+.+.. +...|+-||+|| +|+. +||||||||++|
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNL 735 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNL 735 (807)
T ss_pred hhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCc
Confidence 4432 1122 2223333334443333222 223399999999 4555 999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 138 D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
|.|. ...+-+.|.++ +..|||||||-.++...-|. .+++.
T Consensus 736 DIES------IDALaEAIney----~GgVi~VsHDeRLi~eT~C~-LwVvE 775 (807)
T KOG0066|consen 736 DIES------IDALAEAINEY----NGGVIMVSHDERLIVETDCN-LWVVE 775 (807)
T ss_pred chhh------HHHHHHHHHhc----cCcEEEEecccceeeecCce-EEEEc
Confidence 9999 88899988876 45799999998765322344 34443
No 381
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.64 E-value=1.1e-15 Score=154.37 Aligned_cols=177 Identities=14% Similarity=0.204 Sum_probs=129.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCC--cCCCcc---------c
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD--AFRGRS---------Q 76 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~--~~~G~~---------q 76 (825)
..|++.++.+.|... .++..++|+.+ +.|....++|.|||||||||++|.|-....-+ ...|+. .
T Consensus 12 ~aievsgl~f~y~~~--dP~~~Dfnldl--p~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS--DPIFFDFNLDL--PAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ceEEEeccEEecccC--CceEEEEeecc--CCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 469999999999763 68999999999 99999999999999999999999996420000 001110 0
Q ss_pred ceeeE----E-----------cCCCccchhHHHHHHhhCCChhhhhhhhh---------------HHHHHHHHHHHHHH-
Q 039839 77 TTKGI----W-----------IAKCVGIEPFTIAMDLEGSDSRERGEDDT---------------TFEKQSALFALAIA- 125 (825)
Q Consensus 77 ~~~G~----~-----------~~~~t~~enl~l~ld~~g~~~~er~e~~~---------------~~ErQRv~iArALa- 125 (825)
....| | +|.....+.+++ .+.|.+. +|++... +.||+||.|++.|.
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mif--gV~g~dp-~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~ 164 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIF--GVGGDDP-ERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK 164 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHHh--hccCCCh-hHhhhhhhheeccceEEEeeccccchhhhHHHHhccc
Confidence 00111 1 111111222222 2334443 4444332 33999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC-CccccccCcEEEEeCCeEEEecCcc
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT-KTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~-~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
+||||||-|.+||.-. +..+++.+++-+.++|.||++.||-.+ .+. +..+++.+..|+|+...+..
T Consensus 165 PfkVLLLDEVTVDLDVlA------RadLLeFlkeEce~RgatIVYATHIFDGLe~--Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 165 PFKVLLLDEVTVDLDVLA------RADLLEFLKEECEQRGATIVYATHIFDGLET--WPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred ceeEEEeeeeEeehHHHH------HHHHHHHHHHHHhhcCcEEEEEeeeccchhh--cchhEEEecCCeeeeccccc
Confidence 9999999999999988 999999999999989999999999995 444 89999999999998765543
No 382
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.62 E-value=2.5e-16 Score=159.31 Aligned_cols=186 Identities=16% Similarity=0.200 Sum_probs=133.3
Q ss_pred eEEEEEeEEEecC-ccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 9 CMQLIDGNGEFNV-DGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~-~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
.+.|.|++..|.. .+...++++++++. ..|||-|++|.+|||||-..++|+|........+..+
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltl--nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTL--NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeee--ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 6889999999943 22456889999999 9999999999999999999999999853221111111
Q ss_pred --cc----ceeeEEcCCCcc-chhHHHH-----------------HHhhCCChhhhhh-------------------hhh
Q 039839 75 --SQ----TTKGIWIAKCVG-IEPFTIA-----------------MDLEGSDSRERGE-------------------DDT 111 (825)
Q Consensus 75 --~q----~~~G~~~~~~t~-~enl~l~-----------------ld~~g~~~~er~e-------------------~~~ 111 (825)
++ ..+.++||.+.. .+.-.-+ ..-+|...+...+ ...
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 01 123445554321 1110000 0001111111000 112
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
++|-|+|+||.|++ .+||.||||+++++-. +..+|.++.++.+..|+||++++||+.... ++||++-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~T------q~QifRLLs~mNQn~~TtILL~s~Dl~~is-~W~d~i~VlY 233 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTT------QAQIFRLLSRLNQNSNTTILLISHDLQMIS-QWADKINVLY 233 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccH------HHHHHHHHHHhhccCCceEEEEcccHHHHH-HHhhheEEEE
Confidence 23889999999999 9999999999999888 999999999999888999999999996553 5999999999
Q ss_pred CCeEEEecCcccccC
Q 039839 189 IQKIWDAVPKPQTLK 203 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~ 203 (825)
-|+-+++++.+++++
T Consensus 234 CGQ~~ESa~~e~l~~ 248 (330)
T COG4170 234 CGQTVESAPSEELVT 248 (330)
T ss_pred ecccccccchhHHhc
Confidence 999999998777654
No 383
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.62 E-value=2.5e-15 Score=159.45 Aligned_cols=68 Identities=7% Similarity=0.116 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 111 TTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 111 ~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
...||||++||+|++ +++|+||||++||++. ...+++.++++. + |.++|+|||+.+... .||+
T Consensus 168 S~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~------~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~--~~d~ 237 (251)
T cd03273 168 SGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSH------TQNIGRMIKTHF-K-GSQFIVVSLKEGMFN--NANV 237 (251)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHc-C-CCEEEEEECCHHHHH--hCCE
Confidence 445999999999884 7999999999999999 999999999985 3 889999999966554 7999
Q ss_pred EEEEe
Q 039839 184 ILRED 188 (825)
Q Consensus 184 vlvl~ 188 (825)
++-+.
T Consensus 238 v~~~~ 242 (251)
T cd03273 238 LFRTR 242 (251)
T ss_pred EEEEE
Confidence 98765
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=3.4e-16 Score=190.88 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=142.3
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc------------ccceeeEE------cCCC
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------SQTTKGIW------IAKC 86 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------~q~~~G~~------~~~~ 86 (825)
+.+|++|+--+ .+|-.+||+|+|||||||||++|+|-.. ++-.+|. .++..||+ .+..
T Consensus 804 ~qLL~~V~G~~--kPG~LTALMG~SGAGKTTLLdvLA~R~t--~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 804 RQLLNNVSGAF--KPGVLTALMGESGAGKTTLLDVLAGRKT--GGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred eEhhhcCceEe--cCCceeehhcCCCCchHHHHHHHhcCcc--cceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 67899999888 9999999999999999999999999732 3444443 13457887 3456
Q ss_pred ccchhHHHHHHhhC---CChhhhhhh---hhHH---------------------HHHHHHHHHHHH----HHheecCCCC
Q 039839 87 VGIEPFTIAMDLEG---SDSRERGED---DTTF---------------------EKQSALFALAIA----DIVLINMWCH 135 (825)
Q Consensus 87 t~~enl~l~ld~~g---~~~~er~e~---~~~~---------------------ErQRv~iArALa----~VLLLDEPts 135 (825)
|+.|.+.+...++. .+..++.+- +.++ ||+|+.||--|+ -||+|||||+
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS 959 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence 78888888766552 222222111 1111 999999998887 6899999999
Q ss_pred CCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe-CCeEEEecCcccccCCcccccccccc
Q 039839 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED-IQKIWDAVPKPQTLKNTPLSEFFNVE 214 (825)
Q Consensus 136 gLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~-~GkI~~~g~~~e~l~~~~l~d~f~~~ 214 (825)
|||... .-.|++.+++++.. |.|||.++|.+...-++..|++++|+ .|+.+..|+..+. ...+-+||.-.
T Consensus 960 GLDsqa------A~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~--s~~li~YFes~ 1030 (1391)
T KOG0065|consen 960 GLDSQA------AAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN--SSKLIEYFESI 1030 (1391)
T ss_pred CccHHH------HHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc--cHHHHHHHHhc
Confidence 999999 99999999999986 99999999999654456799998886 5899999987653 34556676532
Q ss_pred c-ccccccccchhhHHHHH
Q 039839 215 V-TALSSYEEKEGQFKEQV 232 (825)
Q Consensus 215 ~-~~l~h~~~~~~~F~~~v 232 (825)
- +.-+... +|.+|.-+|
T Consensus 1031 ~~~~~~~~~-NPA~~mLev 1048 (1391)
T KOG0065|consen 1031 GGVKCISDE-NPAEWMLEV 1048 (1391)
T ss_pred CCccCCCCC-ChHHHHHhh
Confidence 1 1111222 667776665
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.61 E-value=3.9e-15 Score=157.80 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 111 TTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 111 ~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
...|+||++||++++ +++|+||||++||+.. ...+.+.+.++.++ |.++|+||||.+... .||+
T Consensus 157 S~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~------~~~l~~~i~~~~~~-g~~vi~isH~~~~~~--~~d~ 227 (247)
T cd03275 157 SGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTN------VGKVASYIREQAGP-NFQFIVISLKEEFFS--KADA 227 (247)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHH------HHHHHHHHHHhccC-CcEEEEEECCHHHHh--hCCe
Confidence 445999999999995 6999999999999999 99999999999865 899999999987654 7999
Q ss_pred EEEEeC
Q 039839 184 ILREDI 189 (825)
Q Consensus 184 vlvl~~ 189 (825)
++++..
T Consensus 228 i~~~~~ 233 (247)
T cd03275 228 LVGVYR 233 (247)
T ss_pred EEEEEe
Confidence 988863
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3.1e-15 Score=170.44 Aligned_cols=172 Identities=15% Similarity=0.189 Sum_probs=127.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+.+++++++.. ..+.+++|.+ .+|||+||.|-=|||+|=|+++|+|.. ++..|+.
T Consensus 262 ~~l~v~~l~~~-------~~~~dvSf~v--r~GEIlGiaGLvGaGRTEl~~~lfG~~----~~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 262 PVLEVRNLSGG-------GKVRDVSFTV--RAGEILGIAGLVGAGRTELARALFGAR----PASSGEILLDGKPVRIRSP 328 (500)
T ss_pred cEEEEecCCCC-------CceeCceeEE--eCCcEEEEeccccCCHHHHHHHHhCCC----cCCCceEEECCEEccCCCH
Confidence 34556665532 2467889999 999999999999999999999999974 3334431
Q ss_pred ----cceeeEE---------cCCCccchhHHHH-HHhhC----CChhhhhhhhh---------------------HHHHH
Q 039839 76 ----QTTKGIW---------IAKCVGIEPFTIA-MDLEG----SDSRERGEDDT---------------------TFEKQ 116 (825)
Q Consensus 76 ----q~~~G~~---------~~~~t~~enl~l~-ld~~g----~~~~er~e~~~---------------------~~ErQ 116 (825)
..-++|+ +...++.+|+.+. +.-.. .+.+...+... ...||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 1123333 3344667887776 22111 11111111111 12999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
+|.||+.|+ +||||||||.|+|.-. ..+|++++.+|+++ |++||++|-++.+. +..||||++|++|+|.
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGA------K~eIy~li~~lA~~-G~ail~iSSElpEl-l~~~DRIlVm~~Gri~ 480 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGA------KAEIYRLIRELAAE-GKAILMISSELPEL-LGLSDRILVMREGRIV 480 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccch------HHHHHHHHHHHHHC-CCEEEEEeCChHHH-HhhCCEEEEEECCEEE
Confidence 999999999 9999999999999999 99999999999987 99999999999666 3589999999999999
Q ss_pred EecCccc
Q 039839 194 DAVPKPQ 200 (825)
Q Consensus 194 ~~g~~~e 200 (825)
...+..+
T Consensus 481 ~e~~~~~ 487 (500)
T COG1129 481 GELDREE 487 (500)
T ss_pred EEecccc
Confidence 8776554
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.57 E-value=1.2e-14 Score=149.48 Aligned_cols=140 Identities=11% Similarity=0.024 Sum_probs=92.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCC-cCCC----------cccceeeEEcCCCccchh---------HHHHHHhhCC
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMD-AFRG----------RSQTTKGIWIAKCVGIEP---------FTIAMDLEGS 101 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~-~~~G----------~~q~~~G~~~~~~t~~en---------l~l~ld~~g~ 101 (825)
+.+|+|||||||||||.+|......... ...| .....+++.++......| ....+.. ..
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 101 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS-NK 101 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc-cc
Confidence 7899999999999999998643211000 0011 112334445544222221 1111111 11
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHH----H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCC--CCcEEEEEecC
Q 039839 102 DSRERGEDDTTFEKQSALFALAI----A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLLFVIRD 172 (825)
Q Consensus 102 ~~~er~e~~~~~ErQRv~iArAL----a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~--~g~TIL~VTHD 172 (825)
............||||++||+|+ + +++|+|||+++||... ...+.+.+.++..+ .++|||++||+
T Consensus 102 ~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~------~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 102 AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN------RKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH------HHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 11112233455699999999998 3 9999999999999999 99999999998653 24689999999
Q ss_pred CCCccccccCcEEEEeCC
Q 039839 173 KTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 173 l~~a~l~~~drvlvl~~G 190 (825)
++.+. .+|+|.++..+
T Consensus 176 ~~~i~--~~d~v~~~~~~ 191 (198)
T cd03276 176 ISGLA--SSDDVKVFRMK 191 (198)
T ss_pred ccccc--cccceeEEEec
Confidence 98775 46999888754
No 388
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.56 E-value=3.5e-15 Score=153.19 Aligned_cols=139 Identities=10% Similarity=0.053 Sum_probs=94.8
Q ss_pred ccccccccCCC-cEEEEECCCCCChhHHHHHHH--------hcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhC
Q 039839 30 TTKLNHCGLSY-AVVAIMGPQSSGKSTLMNHLF--------HTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEG 100 (825)
Q Consensus 30 ~isl~i~g~~G-eivaIiGpNGSGKSTLLn~L~--------Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g 100 (825)
.+++.+ ..| ++++|.|||||||||||++|. |...+ .... ...+++.+..+. .+
T Consensus 19 ~~~~~i--~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp----~~~~--~~~~~~~~~~~~----------lg 80 (200)
T cd03280 19 PLDIQL--GENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP----AAEG--SSLPVFENIFAD----------IG 80 (200)
T ss_pred cceEEE--CCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc----cccc--ccCcCccEEEEe----------cC
Confidence 457777 667 489999999999999999998 43211 1110 112222111110 01
Q ss_pred CCh--hhhhhhhhHHHHHHHHHHHHHH--HHheecCCCCCCccccccCHHHHHHHH-HHHHHhhCCCCcEEEEEecCCCC
Q 039839 101 SDS--RERGEDDTTFEKQSALFALAIA--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLLFVIRDKTK 175 (825)
Q Consensus 101 ~~~--~er~e~~~~~ErQRv~iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V~-elL~~L~~~~g~TIL~VTHDl~~ 175 (825)
... ..........|+|++.+++++. +++|+|||++|+|++. ...+. .++..+.+. |.++|++||+.+.
T Consensus 81 ~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~------~~~i~~~~l~~l~~~-~~~vi~~tH~~~l 153 (200)
T cd03280 81 DEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVE------GAALAIAILEELLER-GALVIATTHYGEL 153 (200)
T ss_pred chhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHHhc-CCEEEEECCHHHH
Confidence 000 0011122445899999998877 9999999999999998 88886 467777654 8999999999655
Q ss_pred ccccccCcEEEEeCCeEEEe
Q 039839 176 TPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 176 a~l~~~drvlvl~~GkI~~~ 195 (825)
.. .|++++.+++|++..+
T Consensus 154 ~~--~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 154 KA--YAYKREGVENASMEFD 171 (200)
T ss_pred HH--HHhcCCCeEEEEEEEe
Confidence 43 7999999999999766
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.55 E-value=1e-14 Score=161.53 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=110.4
Q ss_pred EEEEEeEEEecCccccccccccccc-cccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-cceeeEEcCCC-
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLN-HCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-QTTKGIWIAKC- 86 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~-i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-q~~~G~~~~~~- 86 (825)
++--++.|.|++ +-..++-+ + ..|||++++||||-||||+.++|+|. +.|++|.. .-++.|-+|..
T Consensus 343 v~y~~~~k~~g~-----F~L~V~~G~i--~~gEvigilGpNgiGKTTFvk~LAG~----ikPdeg~~~~~~vSyKPQyI~ 411 (591)
T COG1245 343 VEYPDLKKTYGD-----FKLEVEEGEI--YDGEVIGILGPNGIGKTTFVKLLAGV----IKPDEGSEEDLKVSYKPQYIS 411 (591)
T ss_pred eecchheeecCc-----eEEEecCCee--ecceEEEEECCCCcchHHHHHHHhcc----ccCCCCCCccceEeecceeec
Confidence 444555666653 22333333 4 78899999999999999999999999 66777742 12233322221
Q ss_pred -----ccchhHHHHHHh-hCCC-------------h--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccc
Q 039839 87 -----VGIEPFTIAMDL-EGSD-------------S--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQA 142 (825)
Q Consensus 87 -----t~~enl~l~ld~-~g~~-------------~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Ept 142 (825)
++.+.+.-...- .+.. . ......+...|.|||+||.||+ |+.|||||.+-||.|+
T Consensus 412 ~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq- 490 (591)
T COG1245 412 PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ- 490 (591)
T ss_pred CCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH-
Confidence 221111111100 0000 0 0111223445999999999999 9999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 143 ANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 143 a~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
+-.+-++|+++....++|.++|.||+-+.. ..+||+++..
T Consensus 491 -----R~~vakvIRR~~e~~~kta~vVdHDi~~~d-yvsDr~ivF~ 530 (591)
T COG1245 491 -----RIIVAKVIRRFIENNEKTALVVDHDIYMID-YVSDRLIVFE 530 (591)
T ss_pred -----HHHHHHHHHHHHhhcCceEEEEecceehhh-hhhceEEEEe
Confidence 999999999999888999999999997775 3688988775
No 390
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.54 E-value=1.5e-14 Score=184.49 Aligned_cols=83 Identities=10% Similarity=0.095 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEE
Q 039839 112 TFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPIL 185 (825)
Q Consensus 112 ~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvl 185 (825)
..|+||++||++|+ +++||||||+|||+.. .+.+++++.++.++ |.|||+||||++.+. .||+++
T Consensus 812 GGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~------~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i~--~aDrVi 882 (1809)
T PRK00635 812 GGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD------IKALIYVLQSLTHQ-GHTVVIIEHNMHVVK--VADYVL 882 (1809)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH--hCCEEE
Confidence 34999999999995 8999999999999999 99999999999876 999999999998765 899999
Q ss_pred EEe------CCeEEEecCcccccC
Q 039839 186 RED------IQKIWDAVPKPQTLK 203 (825)
Q Consensus 186 vl~------~GkI~~~g~~~e~l~ 203 (825)
+|. .|+++..|+++++..
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHHh
Confidence 995 789999998877643
No 391
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.54 E-value=3.7e-15 Score=142.60 Aligned_cols=102 Identities=25% Similarity=0.237 Sum_probs=70.5
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------------cceeeEEcCCCc-----
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------------QTTKGIWIAKCV----- 87 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------------q~~~G~~~~~~t----- 87 (825)
|+++++.+ .+|++++|+|+||||||||+++|+|.. .+..|.. ...++++++...
T Consensus 1 L~~v~~~i--~~g~~~~i~G~nGsGKStLl~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 74 (137)
T PF00005_consen 1 LKNVSLEI--KPGEIVAIVGPNGSGKSTLLKALAGLL----PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGL 74 (137)
T ss_dssp EEEEEEEE--ETTSEEEEEESTTSSHHHHHHHHTTSS----HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTS
T ss_pred CCceEEEE--cCCCEEEEEccCCCccccceeeecccc----ccccccccccccccccccccccccccccccccccccccc
Confidence 46789999 999999999999999999999999994 4444541 345677766532
Q ss_pred -cchh-----HHHHHHhhCCCh---h---hhhhhhhHHHHHHHHHHHHHH---HHheecCCCC
Q 039839 88 -GIEP-----FTIAMDLEGSDS---R---ERGEDDTTFEKQSALFALAIA---DIVLINMWCH 135 (825)
Q Consensus 88 -~~en-----l~l~ld~~g~~~---~---er~e~~~~~ErQRv~iArALa---~VLLLDEPts 135 (825)
+.++ ....+...+... . .........||||++||+|++ ++|||||||+
T Consensus 75 tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 75 TVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp BHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2332 111222222111 1 111445667999999999999 9999998885
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=5.3e-15 Score=165.94 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=109.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccc---ccCCcCCCcccce-eeEEcC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNF---REMDAFRGRSQTT-KGIWIA 84 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~---~~~~~~~G~~q~~-~G~~~~ 84 (825)
-|.+.+++..||+ +.++.+.++.. ..|..+||+|+||+|||||||+|+.... ++-+...|..... ......
T Consensus 80 Di~~~~fdLa~G~---k~LL~~a~L~L--~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 80 DIHIDNFDLAYGG---KILLNKANLTL--SRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLES 154 (582)
T ss_pred ceeeeeeeeeecc---hhhhcCCceee--ecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhc
Confidence 4888899999987 67899999999 9999999999999999999999987332 1111111210000 000000
Q ss_pred CCcc---------------chhHHH-HHHhhCCChhhhh---hhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccc
Q 039839 85 KCVG---------------IEPFTI-AMDLEGSDSRERG---EDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQA 142 (825)
Q Consensus 85 ~~t~---------------~enl~l-~ld~~g~~~~er~---e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Ept 142 (825)
.... .+.+.- .+.-.|....... .....+-|-|+++||||. |+|||||||+-||.-.
T Consensus 155 D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a- 233 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA- 233 (582)
T ss_pred cHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH-
Confidence 0000 000000 1111122211111 111233889999999999 9999999999999887
Q ss_pred cCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 143 ANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 143 a~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
..-+-+.|..+ +.|+|+||||-++.. ..|..|+-+++-++
T Consensus 234 -----v~WLe~yL~t~----~~T~liVSHDr~FLn-~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 234 -----VAWLENYLQTW----KITSLIVSHDRNFLN-TVCTDIIHLENLKL 273 (582)
T ss_pred -----HHHHHHHHhhC----CceEEEEeccHHHHH-HHHHHHHHHhhhhh
Confidence 76676666653 689999999998875 57888888775444
No 393
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.52 E-value=3.1e-14 Score=174.59 Aligned_cols=84 Identities=13% Similarity=0.134 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 111 TTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 111 ~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
...|+||+.||++|+ +++||||||+|||+.. ...+++++.++.++ |.|||+||||++.+. .||++
T Consensus 832 SgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~------~~~L~~~L~~l~~~-G~TVIiitH~~~~i~--~aD~i 902 (943)
T PRK00349 832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED------IRKLLEVLHRLVDK-GNTVVVIEHNLDVIK--TADWI 902 (943)
T ss_pred CHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH--hCCEE
Confidence 445999999999998 3999999999999999 99999999999865 899999999998775 79999
Q ss_pred EEE------eCCeEEEecCcccccC
Q 039839 185 LRE------DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 185 lvl------~~GkI~~~g~~~e~l~ 203 (825)
+.| ++|+|+..|++.++..
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999 6899999998777654
No 394
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.51 E-value=5.2e-14 Score=163.39 Aligned_cols=163 Identities=14% Similarity=0.055 Sum_probs=115.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccc----eeeEEc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQT----TKGIWI 83 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~----~~G~~~ 83 (825)
.+|.++|++..-+.. ...+++.++.+ .+|+-+-|.||||||||||+|+|+|+ .+--+|+... ..-+++
T Consensus 391 ~~i~~~nl~l~~p~~--~~ll~~l~~~v--~~G~~llI~G~SG~GKTsLlRaiaGL----WP~g~G~I~~P~~~~~lflp 462 (604)
T COG4178 391 HGITLENLSLRTPDG--QTLLSELNFEV--RPGERLLITGESGAGKTSLLRALAGL----WPWGSGRISMPADSALLFLP 462 (604)
T ss_pred ceeEEeeeeEECCCC--Ceeeccceeee--CCCCEEEEECCCCCCHHHHHHHHhcc----CccCCCceecCCCCceEEec
Confidence 579999999988653 57899999999 99999999999999999999999999 4444455211 112222
Q ss_pred CCC-----ccchhHHHHHH--------------hhCCCh-------hhhh-hhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 84 AKC-----VGIEPFTIAMD--------------LEGSDS-------RERG-EDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 84 ~~~-----t~~enl~l~ld--------------~~g~~~-------~er~-e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
|.+ +..+-+.++.. ..|.+. ..+. +.....||||++|||.+. ++++|||-
T Consensus 463 Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 222 22333333222 122211 0001 112234999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
|++||.+. ...+++++++-. .++|||-|.|...... ..++.+-+.
T Consensus 543 TsALDe~~------e~~l~q~l~~~l--p~~tvISV~Hr~tl~~--~h~~~l~l~ 587 (604)
T COG4178 543 TSALDEET------EDRLYQLLKEEL--PDATVISVGHRPTLWN--FHSRQLELL 587 (604)
T ss_pred hhccChHH------HHHHHHHHHhhC--CCCEEEEeccchhhHH--HHhhheeec
Confidence 99999998 999999998754 3799999999997765 555554443
No 395
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=4.7e-14 Score=172.73 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 111 TTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 111 ~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
...|+||+.||++|+ +++||||||+|||+.. ...+++++.++.++ |.|||+|+||++.+. .||++
T Consensus 830 SgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~------~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~--~aD~i 900 (924)
T TIGR00630 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDD------IKKLLEVLQRLVDQ-GNTVVVIEHNLDVIK--TADYI 900 (924)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH--hCCEE
Confidence 445999999999998 5999999999999999 99999999999865 999999999998775 69999
Q ss_pred EEE------eCCeEEEecCccc
Q 039839 185 LRE------DIQKIWDAVPKPQ 200 (825)
Q Consensus 185 lvl------~~GkI~~~g~~~e 200 (825)
+.| ++|+|+..|++++
T Consensus 901 i~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 901 IDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred EEecCCccCCCCEEEEeCCHHH
Confidence 999 7899999998654
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.46 E-value=4.1e-14 Score=140.70 Aligned_cols=125 Identities=12% Similarity=0.156 Sum_probs=88.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc----ceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHH
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----TTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTF 113 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ 113 (825)
.++.++.|+|||||||||+|+.+..... ...+... ...|...+.. ...+..... ....+
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~~----~~~~~~~~~~~~~~g~~~~~~----~~~~i~~~~---------~lS~G 81 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAIGLALG----GAQSATRRRSGVKAGCIVAAV----SAELIFTRL---------QLSGG 81 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH----hcchhhhccCcccCCCcceee----EEEEehhee---------ecccc
Confidence 3446999999999999999999765532 1111100 0112111110 000000000 13455
Q ss_pred HHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEE
Q 039839 114 EKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILR 186 (825)
Q Consensus 114 ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlv 186 (825)
|+||+.||++++ +++|+|||+.|+|+.. ...+.+.+.++..+ +.++|++||+++... .+|+++.
T Consensus 82 ~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~------~~~l~~~l~~~~~~-~~~vii~TH~~~~~~--~~d~~~~ 152 (162)
T cd03227 82 EKELSALALILALASLKPRPLYILDEIDRGLDPRD------GQALAEAILEHLVK-GAQVIVITHLPELAE--LADKLIH 152 (162)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHH--hhhhEEE
Confidence 999999999996 6999999999999999 99999999998776 899999999998876 6899988
Q ss_pred Ee
Q 039839 187 ED 188 (825)
Q Consensus 187 l~ 188 (825)
|.
T Consensus 153 l~ 154 (162)
T cd03227 153 IK 154 (162)
T ss_pred EE
Confidence 86
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.46 E-value=7e-14 Score=141.52 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=88.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCCccc---------------ceeeEEcCCCccchhHHHHHHhhCCChhhh
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ---------------TTKGIWIAKCVGIEPFTIAMDLEGSDSRER 106 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q---------------~~~G~~~~~~t~~enl~l~ld~~g~~~~er 106 (825)
+.+|+||||||||++|.+|.-..... ....++.. ..+-+.+. |. +.-.+..+.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~------~~-----~~~~~~~~~ 91 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGK-AAKLRRGSLLFLAGGGVKAGINSASVEITFD------KS-----YFLVLQGKV 91 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcc-cccccCcchhhhcccccCCCCceEEEEEEEE------Cc-----eEEecCCcC
Confidence 89999999999999999984331100 00000000 00111111 11 111122233
Q ss_pred hhhhhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccc
Q 039839 107 GEDDTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLE 179 (825)
Q Consensus 107 ~e~~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~ 179 (825)
.+.....|+||++||++++ +++|+|||+++||+.. ...+.+.+.++.+. |.++|++||+++...
T Consensus 92 ~~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~------~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-- 162 (178)
T cd03239 92 EQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTN------RRRVSDMIKEMAKH-TSQFIVITLKKEMFE-- 162 (178)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh--
Confidence 3336777999999999883 9999999999999999 99999999999765 899999999997765
Q ss_pred ccCcEEEEeC
Q 039839 180 YLEPILREDI 189 (825)
Q Consensus 180 ~~drvlvl~~ 189 (825)
.+|+++.+..
T Consensus 163 ~adrvi~i~~ 172 (178)
T cd03239 163 NADKLIGVLF 172 (178)
T ss_pred hCCeEEEEEE
Confidence 7999998864
No 398
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.45 E-value=7e-14 Score=143.72 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=85.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHH
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTF 113 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ 113 (825)
..|++++|+|||||||||||++|.+... -...|.. ...+++..+ +...+..... ....... ...
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~~~---~~~~g~~~~~~~~~i~~~dq-------i~~~~~~~d~-i~~~~s~-~~~ 94 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLAVL---LAQIGCFVPAESASIPLVDR-------IFTRIGAEDS-ISDGRST-FMA 94 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHHHH---HHHcCCCccccccccCCcCE-------EEEEecCccc-ccCCcee-HHH
Confidence 4578999999999999999999996532 1111210 111221100 0000000000 0000001 122
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHH-HHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~e-lL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
+.|++..+.+++ +++|+|||++|+|+.. ...+.. ++..+.+. +.++|++||+.+... .++++..+..
T Consensus 95 e~~~l~~i~~~~~~~~llllDEp~~gld~~~------~~~l~~~ll~~l~~~-~~~vi~~tH~~~~~~--~~~~~~~l~~ 165 (202)
T cd03243 95 ELLELKEILSLATPRSLVLIDELGRGTSTAE------GLAIAYAVLEHLLEK-GCRTLFATHFHELAD--LPEQVPGVKN 165 (202)
T ss_pred HHHHHHHHHHhccCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHhc-CCeEEEECChHHHHH--HhhcCCCeEE
Confidence 445555555555 9999999999999877 666654 45555544 899999999998775 6777777888
Q ss_pred CeEEEecCc
Q 039839 190 QKIWDAVPK 198 (825)
Q Consensus 190 GkI~~~g~~ 198 (825)
+++...+..
T Consensus 166 ~~~~~~~~~ 174 (202)
T cd03243 166 LHMEELITT 174 (202)
T ss_pred EEEEEEecC
Confidence 888777653
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.6e-13 Score=150.56 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=124.2
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----ccceeeEE
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR----SQTTKGIW 82 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~----~q~~~G~~ 82 (825)
.+.+++.++++.|+.... .+..+++++. ..-..++++|+||+||||+++++.|- ..|..|- .+.++++.
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~--e~~sRi~~vg~ng~gkst~lKi~~~~----l~~~rgi~~~~~r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDR--ESDSRISRVGENGDGKSTLLKILKGD----LTPTRGIVGRHPRLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCcc--chhhhhheeccCchhHHHHHHHHhcc----CCcccceeeecccceecch
Confidence 357999999999976422 6788888888 78889999999999999999999996 3444443 34567777
Q ss_pred cCCCccc----hh-HHHHHH-hhCCChhhhhhhh-----------------hHHHHHHHHHHHHHH---HHheecCCCCC
Q 039839 83 IAKCVGI----EP-FTIAMD-LEGSDSRERGEDD-----------------TTFEKQSALFALAIA---DIVLINMWCHD 136 (825)
Q Consensus 83 ~~~~t~~----en-l~l~ld-~~g~~~~er~e~~-----------------~~~ErQRv~iArALa---~VLLLDEPtsg 136 (825)
+|+..-. .+ +.+.+. ..|....+.+... ..+||-||+||.... .+|+|||||+-
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh 512 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH 512 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc
Confidence 6653211 01 111111 1233332222211 223999999997777 99999999999
Q ss_pred CccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 137 LD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
||.+. ...+-+.|+.. +-.||+||||.+++. ..|+.+++.++|++..
T Consensus 513 LD~ds------l~AL~~Al~~F----~GGVv~VSHd~~fi~-~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 513 LDRDS------LGALAKALKNF----NGGVVLVSHDEEFIS-SLCKELWVVEDGKVTP 559 (582)
T ss_pred ccHHH------HHHHHHHHHhc----CCcEEEEECcHHHHh-hcCceeEEEcCCcEEe
Confidence 99999 88888888765 457999999999885 5799999999999864
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.40 E-value=6.1e-13 Score=137.00 Aligned_cols=137 Identities=12% Similarity=0.052 Sum_probs=84.0
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccce------eeEEcCCCccchhHHHHHHhh
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTT------KGIWIAKCVGIEPFTIAMDLE 99 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~------~G~~~~~~t~~enl~l~ld~~ 99 (825)
.+.+++++.. |++++|+||||||||||||+|.|... +. ..|..... ....+...++.+++.+.....
T Consensus 15 ~v~n~i~l~~----g~~~~ltGpNg~GKSTllr~i~~~~~--l~-~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~ 87 (199)
T cd03283 15 RVANDIDMEK----KNGILITGSNMSGKSTFLRTIGVNVI--LA-QAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF 87 (199)
T ss_pred eecceEEEcC----CcEEEEECCCCCChHHHHHHHHHHHH--HH-HcCCEEecCccCcccceEEEeccchhccccccChH
Confidence 4666776655 58999999999999999999998642 10 11221000 122344445556655432110
Q ss_pred CCChhhhhhhhhHHHHHHHH--HHHHH--H-HHheecCCCCCCccccccCHHHHHHHH-HHHHHhhCCCCcEEEEEecCC
Q 039839 100 GSDSRERGEDDTTFEKQSAL--FALAI--A-DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 100 g~~~~er~e~~~~~ErQRv~--iArAL--a-~VLLLDEPtsgLD~Epta~~~~~~~V~-elL~~L~~~~g~TIL~VTHDl 173 (825)
..+.+|+. +.++- - +++|+|||++|+|+.. ...+. .++..+.+. |.++|++|||+
T Consensus 88 ------------~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~------~~~l~~~ll~~l~~~-~~tiiivTH~~ 148 (199)
T cd03283 88 ------------YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRE------RQAASAAVLKFLKNK-NTIGIISTHDL 148 (199)
T ss_pred ------------HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHH------HHHHHHHHHHHHHHC-CCEEEEEcCcH
Confidence 11122222 22222 2 8999999999999887 66664 467777654 89999999999
Q ss_pred CCcc-ccccCcEEEEe
Q 039839 174 TKTP-LEYLEPILRED 188 (825)
Q Consensus 174 ~~a~-l~~~drvlvl~ 188 (825)
+.+. ++..+++-.++
T Consensus 149 ~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 149 ELADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHhhhcCCCeEEEE
Confidence 6653 12244554443
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.40 E-value=3.6e-13 Score=149.37 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=103.7
Q ss_pred EEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------cceeeEEcC-----
Q 039839 16 NGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------QTTKGIWIA----- 84 (825)
Q Consensus 16 sk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------q~~~G~~~~----- 84 (825)
..+|+.+.+ -|..+.. . .+|.++||+||||-||||-+|+|+|...|.++...+.. ..-.|--+|
T Consensus 81 vHRYg~NgF--kL~~LP~-p--r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 81 VHRYGVNGF--KLYRLPT-P--RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred eeeccCCce--EEecCCC-C--CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 456765322 2333322 2 68999999999999999999999999766665544420 000000000
Q ss_pred ----CCcc---chhHHHHH------------------------HhhCCC---hhhhhhhhhHHHHHHHHHHHHHH---HH
Q 039839 85 ----KCVG---IEPFTIAM------------------------DLEGSD---SRERGEDDTTFEKQSALFALAIA---DI 127 (825)
Q Consensus 85 ----~~t~---~enl~l~l------------------------d~~g~~---~~er~e~~~~~ErQRv~iArALa---~V 127 (825)
...+ .+.+.... +..++. .++ .......|.||++||.+++ |+
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~-v~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-VSELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh-hhhcCchHHHHHHHHHHHhccCCE
Confidence 0000 00111100 000100 000 1112334999999999999 99
Q ss_pred heecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 128 LLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.++|||++-||..+ +-.+..++++|.+. +++||+|.||+.... ..+|-|.++.
T Consensus 235 Y~FDEpsSyLDi~q------Rl~~ar~Irel~~~-~k~ViVVEHDLavLD-~lsD~vhI~Y 287 (591)
T COG1245 235 YFFDEPSSYLDIRQ------RLNAARVIRELAED-GKYVIVVEHDLAVLD-YLSDFVHILY 287 (591)
T ss_pred EEEcCCcccccHHH------HHHHHHHHHHHhcc-CCeEEEEechHHHHH-HhhheeEEEe
Confidence 99999999999999 99999999999987 899999999998765 3578887776
No 402
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=1.5e-13 Score=143.78 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=96.3
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceee-EEcCCCccchhHHHHHHhhCCCh
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKG-IWIAKCVGIEPFTIAMDLEGSDS 103 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G-~~~~~~t~~enl~l~ld~~g~~~ 103 (825)
..+..+++++. .++++++|.||||+||||||+.+.-... + ...| +++............+...|...
T Consensus 17 ~~v~~~~~~~~--~~~~~~~l~G~n~~GKstll~~i~~~~~--l--------a~~g~~vpa~~~~~~~~~~il~~~~l~d 84 (222)
T cd03285 17 AFIPNDVTLTR--GKSRFLIITGPNMGGKSTYIRQIGVIVL--M--------AQIGCFVPCDSADIPIVDCILARVGASD 84 (222)
T ss_pred CeEEeeEEEee--cCCeEEEEECCCCCChHHHHHHHHHHHH--H--------HHhCCCcCcccEEEeccceeEeeecccc
Confidence 45678888888 8899999999999999999999863211 1 0111 11111100000000111122222
Q ss_pred hhhhhhhhHHHHHHHHHHHHH--H---HHheecCC---CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCC
Q 039839 104 RERGEDDTTFEKQSALFALAI--A---DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTK 175 (825)
Q Consensus 104 ~er~e~~~~~ErQRv~iArAL--a---~VLLLDEP---tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~ 175 (825)
. .......+++|+..+++++ + +++||||| |+++|+.. .. ..++..+.++.|.++|++||+.+.
T Consensus 85 ~-~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~------~~--~~il~~l~~~~~~~vlisTH~~el 155 (222)
T cd03285 85 S-QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG------LA--WAIAEYIATQIKCFCLFATHFHEL 155 (222)
T ss_pred c-hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH------HH--HHHHHHHHhcCCCeEEEEechHHH
Confidence 1 1234567789998888888 4 99999999 88898766 32 223334433347899999997555
Q ss_pred ccccccCcEEEEeCCeEEEecC
Q 039839 176 TPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 176 a~l~~~drvlvl~~GkI~~~g~ 197 (825)
.. +|+++..+++|++...+.
T Consensus 156 ~~--~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 156 TA--LADEVPNVKNLHVTALTD 175 (222)
T ss_pred HH--HhhcCCCeEEEEEEEEEe
Confidence 54 799999899999877664
No 403
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.38 E-value=1.9e-12 Score=134.76 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCC-cEEEEEecCCCCccccccC
Q 039839 111 TTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK-TTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 111 ~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g-~TIL~VTHDl~~a~l~~~d 182 (825)
...|||++.+|.+++ +++|+|||+++||+.. ...+++.+.++.++.| .|+|++|||+... +..|+
T Consensus 128 S~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~------~~~i~~~l~~~~~~~g~~~viiith~~~~~-~~~~~ 200 (213)
T cd03277 128 SGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN------ERKVFDMLVETACKEGTSQYFLITPKLLPG-LNYHE 200 (213)
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH------HHHHHHHHHHHhhcCCCceEEEEchhhccC-CcccC
Confidence 445999988775532 8999999999999999 9999999999876534 6899999998554 23555
Q ss_pred --cEEEEeCCe
Q 039839 183 --PILREDIQK 191 (825)
Q Consensus 183 --rvlvl~~Gk 191 (825)
+++++.+|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 788888776
No 404
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=2.4e-12 Score=133.22 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=83.5
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEc----CCCccchhHHHHHHhhC
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWI----AKCVGIEPFTIAMDLEG 100 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~----~~~t~~enl~l~ld~~g 100 (825)
..+..+++++. ..|++++|+||||+||||||++|.|+.. +. .+|... ...+..+++...+....
T Consensus 16 ~~v~~~~~~~~--~~~~~~~l~G~n~~GKstll~~i~~~~~--la--------~~G~~vpa~~~~l~~~d~I~~~~~~~d 83 (204)
T cd03282 16 NFIPNDIYLTR--GSSRFHIITGPNMSGKSTYLKQIALLAI--MA--------QIGCFVPAEYATLPIFNRLLSRLSNDD 83 (204)
T ss_pred cEEEeeeEEee--CCCcEEEEECCCCCCHHHHHHHHHHHHH--HH--------HcCCCcchhhcCccChhheeEecCCcc
Confidence 45788899998 8999999999999999999999988742 11 122211 12223334332222111
Q ss_pred CChhhhhhhhhHH--HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHH-HHHHHHHhhCCCCcEEEEEecCCC
Q 039839 101 SDSRERGEDDTTF--EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKT-VFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 101 ~~~~er~e~~~~~--ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~-V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
...+....| +.+++..+.+++ +++|+|||+.|+|+.. ... ...++..+.+. |.++|++||+.+
T Consensus 84 ----~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~------~~~l~~~il~~l~~~-~~~~i~~TH~~~ 152 (204)
T cd03282 84 ----SMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSAD------GFAISLAILECLIKK-ESTVFFATHFRD 152 (204)
T ss_pred ----ccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHH------HHHHHHHHHHHHHhc-CCEEEEECChHH
Confidence 011122222 333445555555 9999999999999865 333 34556666655 899999999997
Q ss_pred Ccc
Q 039839 175 KTP 177 (825)
Q Consensus 175 ~a~ 177 (825)
.+.
T Consensus 153 l~~ 155 (204)
T cd03282 153 IAA 155 (204)
T ss_pred HHH
Confidence 764
No 405
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.27 E-value=5.3e-12 Score=131.63 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=84.6
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE---cCCCccchhHHHHHHh
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW---IAKCVGIEPFTIAMDL 98 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~---~~~~t~~enl~l~ld~ 98 (825)
.+..+++++. .. ++++|+||||||||||||.|++... +. ..|.. ...++++ +...+..+++...
T Consensus 19 ~v~n~~~l~~--~~-~~~~l~Gpn~sGKstllr~i~~~~~--l~-~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g--- 89 (216)
T cd03284 19 FVPNDTELDP--ER-QILLITGPNMAGKSTYLRQVALIAL--LA-QIGSFVPASKAEIGVVDRIFTRIGASDDLAGG--- 89 (216)
T ss_pred eEeeeEEecC--Cc-eEEEEECCCCCChHHHHHHHHHHHH--Hh-ccCCeeccccceecceeeEeccCCchhhhccC---
Confidence 3566777776 33 8999999999999999999987542 11 11221 1122322 2333322332211
Q ss_pred hCCChhhhhhhhhHHHHHHHHHHHHHH-----HHheecCC---CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEe
Q 039839 99 EGSDSRERGEDDTTFEKQSALFALAIA-----DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVI 170 (825)
Q Consensus 99 ~g~~~~er~e~~~~~ErQRv~iArALa-----~VLLLDEP---tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VT 170 (825)
...+...++.++.++. .++||||| |+++|... ....++..+.+..+.++|++|
T Consensus 90 -----------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~--------~~~~il~~l~~~~~~~vi~~T 150 (216)
T cd03284 90 -----------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS--------IAWAIVEYLHEKIGAKTLFAT 150 (216)
T ss_pred -----------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH--------HHHHHHHHHHhccCCcEEEEe
Confidence 1233333334444433 89999999 66666543 122333334333378999999
Q ss_pred cCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 171 RDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 171 HDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
|+.+... .++++..+.+|++...+...
T Consensus 151 H~~~l~~--l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 151 HYHELTE--LEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred CcHHHHH--HhhcCCCeEEEEEEEEeeCC
Confidence 9986654 67766666778776655443
No 406
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=138.27 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=117.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccc------e-ee
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQT------T-KG 80 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~------~-~G 80 (825)
.+|++++++..-... -..+.+++++.+ ..|+-+-|.||||||||+|||+|.|+ .+-..|+.+. + .=
T Consensus 432 n~i~~e~v~l~tPt~-g~~lie~Ls~~V--~~g~~LLItG~sG~GKtSLlRvlggL----Wp~~~G~l~k~~~~~~~~lf 504 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN-GDLLIENLSLEV--PSGQNLLITGPSGCGKTSLLRVLGGL----WPSTGGKLTKPTDGGPKDLF 504 (659)
T ss_pred ceEEeeeeeecCCCC-CceeeeeeeeEe--cCCCeEEEECCCCCchhHHHHHHhcc----cccCCCeEEecccCCCCceE
Confidence 479999999887542 255778899999 99999999999999999999999998 4445555210 1 11
Q ss_pred EEcCCC-----ccchhHHHHH-------------------Hh----------hCCChhh---hhhhhhHHHHHHHHHHHH
Q 039839 81 IWIAKC-----VGIEPFTIAM-------------------DL----------EGSDSRE---RGEDDTTFEKQSALFALA 123 (825)
Q Consensus 81 ~~~~~~-----t~~enl~l~l-------------------d~----------~g~~~~e---r~e~~~~~ErQRv~iArA 123 (825)
+++|.+ |.++.+.++. +. .|.+... ..+....+|+||+++||-
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARL 584 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARL 584 (659)
T ss_pred EecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHH
Confidence 233332 2233333331 11 1222111 111123349999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEE
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~ 194 (825)
+. ++-||||-|+++|.+- ...+.+.+++ .|+|.|=|.|...... .-|.++-|+.+.=|.
T Consensus 585 fy~kPk~AiLDE~TSAv~~dv------E~~~Yr~~r~----~giT~iSVgHRkSL~k--fHd~~L~~~g~g~w~ 646 (659)
T KOG0060|consen 585 FYHKPKFAILDECTSAVTEDV------EGALYRKCRE----MGITFISVGHRKSLWK--FHDYVLRMDGRGSWR 646 (659)
T ss_pred HhcCCceEEeechhhhccHHH------HHHHHHHHHH----cCCeEEEeccHHHHHh--hhhEEEEecCCCceE
Confidence 99 9999999999998776 6666666654 4999999999998876 778888888654444
No 407
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=8.1e-12 Score=137.47 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=107.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCC-
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKC- 86 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~- 86 (825)
|-|.|+|.+.+-.+ +.+..+.++.+ ..|..+|++||||-||||||++|+.-.+. ++|.---.....-++....
T Consensus 263 ~DIKiEnF~ISA~G---k~LFvnA~L~I--v~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 263 MDIKIENFDISAQG---KLLFVNASLTI--VYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred ccceeeeeeeeccc---ceeeeccceEE--EecceecccCCCCCchHHHHHHHHhhhcc-CCCCCceEeeeeeeeecCcH
Confidence 45889998888755 55677888999 88999999999999999999999875321 1111000000000110000
Q ss_pred -------------------------------ccchhHHHH---HHhhCCChhh-hhhhhhH------------------H
Q 039839 87 -------------------------------VGIEPFTIA---MDLEGSDSRE-RGEDDTT------------------F 113 (825)
Q Consensus 87 -------------------------------t~~enl~l~---ld~~g~~~~e-r~e~~~~------------------~ 113 (825)
++.+.+.-+ +.-.|-+..+ +..++.. .
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCc
Confidence 011111111 0111222111 1111111 1
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
-|-||.+||||. -+|+|||||+.||... .--+-..|..+ ++|+|+|+||-.+.. ..|..|+.+++.
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNA------VIWLdNYLQgW----kKTLLIVSHDQgFLD-~VCtdIIHLD~q 485 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNA------VIWLDNYLQGW----KKTLLIVSHDQGFLD-SVCTDIIHLDNQ 485 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccce------eeehhhHHhhh----hheeEEEecccchHH-HHHHHHhhhhhh
Confidence 677999999999 8999999999999887 55555555554 579999999998875 579999999987
Q ss_pred eEE
Q 039839 191 KIW 193 (825)
Q Consensus 191 kI~ 193 (825)
++-
T Consensus 486 kLh 488 (807)
T KOG0066|consen 486 KLH 488 (807)
T ss_pred hhh
Confidence 764
No 408
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.19 E-value=7.8e-11 Score=132.84 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=134.4
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.+.++++|++..-... ...+.+++|.+ ..|||+||.|-.|-|-+-|+.+|+|+.. +..|+.
T Consensus 255 ~~vL~V~~L~v~~~~~--~~~v~~vs~~V--r~GEIvGIAGV~GNGQ~eL~eaisGlr~----~~~G~I~l~G~~v~~~~ 326 (501)
T COG3845 255 EVVLEVEDLSVKDRRG--VTAVKDVSFEV--RAGEIVGIAGVAGNGQSELVEAISGLRK----PASGRILLNGKDVLGRL 326 (501)
T ss_pred CeEEEEeeeEeecCCC--CceeeeeeeEE--ecCcEEEEEecCCCCHHHHHHHHhCCCc----cCCceEEECCEeccccC
Confidence 3579999999876442 35688999999 9999999999999999999999999952 333431
Q ss_pred ------cceeeEEc---------CCCccchhHHHHHHhh------C-CChhhhhh----hh-----------------hH
Q 039839 76 ------QTTKGIWI---------AKCVGIEPFTIAMDLE------G-SDSRERGE----DD-----------------TT 112 (825)
Q Consensus 76 ------q~~~G~~~---------~~~t~~enl~l~ld~~------g-~~~~er~e----~~-----------------~~ 112 (825)
..-.|+++ ..+++.+|..+..... | .+...... .+ ..
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSG 406 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG 406 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCC
Confidence 01123332 2335567766543211 1 11111111 11 12
Q ss_pred HHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 113 FEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 113 ~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
..+||+-+||=+. ++||+..||-|||... ...|.+.|.++.++ |++||+|+-|++++ +..||||.+|.+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA------~~~I~~~l~e~r~~-G~AVLLiS~dLDEi-l~lsDrIaVi~~ 478 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGA------IEFIHERLLELRDA-GKAVLLISEDLDEI-LELSDRIAVIYE 478 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHH------HHHHHHHHHHHHhc-CCEEEEEehhHHHH-HHhhheeeeeeC
Confidence 2999999999999 9999999999999999 99999999999887 99999999999887 578999999999
Q ss_pred CeEEEecCccc
Q 039839 190 QKIWDAVPKPQ 200 (825)
Q Consensus 190 GkI~~~g~~~e 200 (825)
|+|+...++++
T Consensus 479 Gri~~~~~~~~ 489 (501)
T COG3845 479 GRIVGIVPPEE 489 (501)
T ss_pred Cceeccccccc
Confidence 99998887654
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=7.3e-11 Score=122.90 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=78.8
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhCCC
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEGSD 102 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g~~ 102 (825)
+-.++.++- ..+.+++|.||||+|||||||.|..... + +..|.. ...++++-+-.+.. +..
T Consensus 18 vpnd~~l~~--~~~~~~~itGpNg~GKStlLk~i~~~~~--l-a~~G~~v~a~~~~~~~~d~i~~~l----------~~~ 82 (213)
T cd03281 18 VPNDTEIGG--GGPSIMVITGPNSSGKSVYLKQVALIVF--L-AHIGSFVPADSATIGLVDKIFTRM----------SSR 82 (213)
T ss_pred EcceEEecC--CCceEEEEECCCCCChHHHHHHHHHHHH--H-HhCCCeeEcCCcEEeeeeeeeeee----------CCc
Confidence 344555443 3347899999999999999999984311 1 222321 12233332211100 000
Q ss_pred hhhhhhhhhHH--HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCC--CCcEEEEEecCCCC
Q 039839 103 SRERGEDDTTF--EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLLFVIRDKTK 175 (825)
Q Consensus 103 ~~er~e~~~~~--ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~--~g~TIL~VTHDl~~ 175 (825)
....+....| +.||+.+|++++ .++|+|||++|+|+.. ....+..+++.+.+. .+.++|++||+++.
T Consensus 83 -~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~-----~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 83 -ESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTED-----GAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred -cChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH-----HHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 0001111223 789999999888 9999999999999865 033445677777543 13589999999976
Q ss_pred cc
Q 039839 176 TP 177 (825)
Q Consensus 176 a~ 177 (825)
+.
T Consensus 157 ~~ 158 (213)
T cd03281 157 FN 158 (213)
T ss_pred HH
Confidence 54
No 410
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.12 E-value=2.7e-11 Score=123.09 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=67.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHH
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQS 117 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQR 117 (825)
++.|.||||+|||||||.+.-... -...|.. ...++++ +.+. ...+... ........+.++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~---la~~G~~v~a~~~~~~~~-------d~il---~~~~~~d-~~~~~~s~fs~~~ 66 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI---MAQIGSFVPAESAELPVF-------DRIF---TRIGASD-SLAQGLSTFMVEM 66 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH---HHHhCCCeeehheEeccc-------ceEE---EEeCCCC-chhccccHHHHHH
Confidence 368999999999999999973321 1122221 0111111 0000 0011111 1111223443333
Q ss_pred HHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHH-HHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 118 ALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 118 v~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~-elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
..+++++. +++|+|||++|+|+.. ...+. .++..+.++.+.++|++||+++... .|+.
T Consensus 67 ~~l~~~l~~~~~~~llllDEp~~g~d~~~------~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~--~~~~ 130 (185)
T smart00534 67 KETANILKNATENSLVLLDELGRGTSTYD------GVAIAAAVLEYLLEKIGALTLFATHYHELTK--LADE 130 (185)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHhcCCCeEEEEecHHHHHH--Hhhc
Confidence 33444444 7999999999999886 55554 4555565434789999999997554 5553
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.3e-10 Score=134.75 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 114 EKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 114 ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
|.||+=||.-|. -+.||||||+||=.+- .+.++++|.+|... |-|||+|.|+++.+. .||.|+-+
T Consensus 827 EaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~D------i~kLl~VL~rLvd~-GnTViVIEHNLdVIk--~AD~IIDL 897 (935)
T COG0178 827 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDD------IKKLLEVLHRLVDK-GNTVIVIEHNLDVIK--TADWIIDL 897 (935)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecccceEe--ecCEEEEc
Confidence 999999999998 6999999999999998 99999999999987 999999999999987 89999887
Q ss_pred ------eCCeEEEecCcccccC
Q 039839 188 ------DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 ------~~GkI~~~g~~~e~l~ 203 (825)
..|+|++.|+|+++.+
T Consensus 898 GPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 898 GPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCceEEEecCHHHHHh
Confidence 3589999999988764
No 412
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.11 E-value=2.6e-10 Score=128.59 Aligned_cols=160 Identities=15% Similarity=0.070 Sum_probs=103.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIA 84 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~ 84 (825)
.|.++|+-.--... ..+...++|.+ .+|-.+.|+||||||||+|+|+|.|+ .+...|.. ...+-|++|
T Consensus 481 gI~lenIpvItP~~--~vvv~~Ltf~i--~~G~hLLItGPNGCGKSSLfRILggL----WPvy~g~L~~P~~~~mFYIPQ 552 (728)
T KOG0064|consen 481 GIILENIPVITPAG--DVLVPKLTFQI--EPGMHLLITGPNGCGKSSLFRILGGL----WPVYNGLLSIPRPNNIFYIPQ 552 (728)
T ss_pred ceEEecCceeccCc--ceeecceeEEe--cCCceEEEECCCCccHHHHHHHHhcc----CcccCCeeecCCCcceEeccC
Confidence 36666766655332 45778889999 99999999999999999999999998 44444541 122333333
Q ss_pred CC-----ccchhHHHHHHh-----hCCChh-------------------------hhhhhhhHHHHHHHHHHHHHH---H
Q 039839 85 KC-----VGIEPFTIAMDL-----EGSDSR-------------------------ERGEDDTTFEKQSALFALAIA---D 126 (825)
Q Consensus 85 ~~-----t~~enl~l~ld~-----~g~~~~-------------------------er~e~~~~~ErQRv~iArALa---~ 126 (825)
.+ +..+.+.++... .|.... ...+....+||||+.+||.+. +
T Consensus 553 RPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPk 632 (728)
T KOG0064|consen 553 RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPK 632 (728)
T ss_pred CCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcc
Confidence 32 122222222111 011110 011122334999999999999 8
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
..+|||-|+++-.+- ...+++..+. .|.++|-|||....-. +-...+-.+
T Consensus 633 yalLDEcTsAvsidv------E~~i~~~ak~----~gi~llsithrpslwk--~h~~ll~~d 682 (728)
T KOG0064|consen 633 YALLDECTSAVSIDV------EGKIFQAAKD----AGISLLSITHRPSLWK--YHTHLLEFD 682 (728)
T ss_pred hhhhhhhhcccccch------HHHHHHHHHh----cCceEEEeecCccHHH--HHHHHHhcc
Confidence 999998888876665 6677777655 4999999999998765 444444333
No 413
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=2e-10 Score=124.01 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHH------H-HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 111 TTFEKQSALFALAI------A-DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 111 ~~~ErQRv~iArAL------a-~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
...|+||++||+++ - +++|+|||+++||+.. ...+.+.+.++.+ +.|+|+||||+.... .||+
T Consensus 172 S~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~------~~~l~~~l~~~~~--~~tii~isH~~~~~~--~~d~ 241 (276)
T cd03241 172 SGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEV------AQAVGKKLKELSR--SHQVLCITHLPQVAA--MADN 241 (276)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEechHHHHH--hcCc
Confidence 34499999999754 2 8999999999999999 9999999999864 689999999998554 8999
Q ss_pred EEEEeCCe
Q 039839 184 ILREDIQK 191 (825)
Q Consensus 184 vlvl~~Gk 191 (825)
++++.+|.
T Consensus 242 ~~~l~~~~ 249 (276)
T cd03241 242 HFLVEKEV 249 (276)
T ss_pred EEEEEEec
Confidence 99888764
No 414
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.09 E-value=2.2e-10 Score=126.21 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=108.8
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccc----cCCcCCCcc---cceeeEEcCCC--------ccc
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFR----EMDAFRGRS---QTTKGIWIAKC--------VGI 89 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~----~~~~~~G~~---q~~~G~~~~~~--------t~~ 89 (825)
..+++++|+.+ ..|++++|+|+|||||||||++|.|..+. ...|++|.. ..+...+.+.. +..
T Consensus 396 ryvlr~vNL~i--kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLRNLNLEI--KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeceeeEe--cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH
Confidence 35789999999 99999999999999999999999997642 244566652 11222222110 111
Q ss_pred hh---------HHH-HHHhhCCChh----hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHH
Q 039839 90 EP---------FTI-AMDLEGSDSR----ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVF 152 (825)
Q Consensus 90 en---------l~l-~ld~~g~~~~----er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~ 152 (825)
+. ... ++.-.|.... ..-.++...|+.|+-||.+++ .+++.||-.+-||+-. ...|.
T Consensus 474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T------A~rVA 547 (593)
T COG2401 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT------AVRVA 547 (593)
T ss_pred HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH------HHHHH
Confidence 11 010 1111122211 111223444999999999999 8999999999999877 88888
Q ss_pred HHHHHhhCCCCcEEEEEecCCCCccccc-cCcEEEEeCCeE
Q 039839 153 QVMMRLFSPRKTTLLFVIRDKTKTPLEY-LEPILREDIQKI 192 (825)
Q Consensus 153 elL~~L~~~~g~TIL~VTHDl~~a~l~~-~drvlvl~~GkI 192 (825)
.-+.+++++.|.|+++|||..++.. .+ -|+++.+.-|+.
T Consensus 548 rkiselaRe~giTlivvThrpEv~~-AL~PD~li~vgYg~v 587 (593)
T COG2401 548 RKISELAREAGITLIVVTHRPEVGN-ALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHHHHHHhCCeEEEEecCHHHHh-ccCCceeEEeecccc
Confidence 8888998888999999999998764 23 577776665554
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.06 E-value=2.3e-10 Score=146.84 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 114 EKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 114 ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
|.||+-||.-|. .++||||||+||++.. ...+++++.+|... |.|||+|.||++... .||.++-|
T Consensus 1704 E~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d------~~~Ll~~l~~L~~~-g~tvivieH~~~~i~--~aD~iidl 1774 (1809)
T PRK00635 1704 EKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ------KSALLVQLRTLVSL-GHSVIYIDHDPALLK--QADYLIEM 1774 (1809)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHH--hCCEEEEc
Confidence 999999999997 4999999999999999 99999999999976 999999999999886 79999988
Q ss_pred e------CCeEEEecCcccccCC
Q 039839 188 D------IQKIWDAVPKPQTLKN 204 (825)
Q Consensus 188 ~------~GkI~~~g~~~e~l~~ 204 (825)
- .|+|++.|+|+++...
T Consensus 1775 gp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1775 GPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred CCCcccCCCEEEEEeCHHHHhhC
Confidence 3 4799999998887643
No 416
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=2.3e-10 Score=140.72 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=131.1
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcC-----CCc------ccceeeEE------cCCCc
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAF-----RGR------SQTTKGIW------IAKCV 87 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~-----~G~------~q~~~G~~------~~~~t 87 (825)
..++++++.-+ ++|+.+-++||.||||||||+.++|-........ .|. .+.+.+|. ++.+|
T Consensus 128 ~~il~~~sg~~--~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 128 IQILKDISGII--KPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ceeecCcceeE--cCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 36889999999 9999999999999999999999999753322211 121 12334443 66778
Q ss_pred cchhHHHHHHhhCC----Chhhhhhhh---h--------------------------HHHHHHHHHHHHHH---HHheec
Q 039839 88 GIEPFTIAMDLEGS----DSRERGEDD---T--------------------------TFEKQSALFALAIA---DIVLIN 131 (825)
Q Consensus 88 ~~enl~l~ld~~g~----~~~er~e~~---~--------------------------~~ErQRv~iArALa---~VLLLD 131 (825)
+.+.+.|..+..+. +.-+|.+.. . .+||+||.+|-+++ .++.+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 89999998877653 112222211 0 01999999999998 999999
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC-CCccccccCcEEEEeCCeEEEecCccccc
Q 039839 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK-TKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 132 EPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl-~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
|+|.|||... .-++.+.++++.+..+.|.++..|.. ..+ .+..|.|++|.+|+++..|+.++.+
T Consensus 286 e~t~GLDSsT------al~iik~lr~~a~~~~~t~~vsi~Q~s~~~-~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 286 EITRGLDSST------AFQIIKALRQLAHITGATALVSILQPSPEI-YDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred cccccccHHH------HHHHHHHHHHHHhhhcceEEEEeccCChHH-HHhhhheeeeeccceEEeccHHHHH
Confidence 9999999888 88999999999888899999999999 444 4689999999999999999977653
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.03 E-value=7.2e-10 Score=119.39 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=76.8
Q ss_pred cEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc---ceeeEEcCCCccchhHHHHHHhhCCChhhhhh---hhhHHH
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ---TTKGIWIAKCVGIEPFTIAMDLEGSDSRERGE---DDTTFE 114 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q---~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e---~~~~~E 114 (825)
.-++|+||||||||||+++|+|. +.+..|+.. ..++.+ .+.-.+.....+.+....+. ......
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~----~~~~~G~i~~~g~~v~~~------d~~~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI----LSTGISQLGLRGKKVGIV------DERSEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc----cCCCCceEEECCEEeecc------hhHHHHHHHhcccccccccccccccccch
Confidence 46899999999999999999999 556666521 011110 00111111111222111111 111123
Q ss_pred HHHHHHHHHH--H-HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCC--cc----------cc
Q 039839 115 KQSALFALAI--A-DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTK--TP----------LE 179 (825)
Q Consensus 115 rQRv~iArAL--a-~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~--a~----------l~ 179 (825)
+...++..+. . +++|+|||.. ...+..++..+. . |.++|++||+.+. +. ..
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~------------~e~~~~l~~~~~-~-G~~vI~ttH~~~~~~~~~r~~~~~l~~~~ 247 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGR------------EEDVEALLEALH-A-GVSIIATAHGRDVEDLYKRPVFKELIENE 247 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCc------------HHHHHHHHHHHh-C-CCEEEEEechhHHHHHHhChHHHHHHhcC
Confidence 3333333333 3 9999997631 333444555543 3 8999999998754 20 14
Q ss_pred ccCcEEEEeCCeEEEecCccccc
Q 039839 180 YLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 180 ~~drvlvl~~GkI~~~g~~~e~l 202 (825)
+++|+++|+.|+ ..|++.+++
T Consensus 248 ~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 248 AFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred ceEEEEEEecCC--CCCceeecc
Confidence 689999999876 556655443
No 418
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.96 E-value=6.1e-10 Score=116.79 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=78.3
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhC
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEG 100 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g 100 (825)
..+..++++.. ..|++++|.||||+||||||++|+|.. +-+..|.. ..+.+++ +.+... .+
T Consensus 18 ~~v~n~i~~~~--~~g~~~~itG~N~~GKStll~~i~~~~---~la~~G~~v~a~~~~~~~~-------~~i~~~---~~ 82 (222)
T cd03287 18 SFVPNDIHLSA--EGGYCQIITGPNMGGKSSYIRQVALIT---IMAQIGSFVPASSATLSIF-------DSVLTR---MG 82 (222)
T ss_pred CEEEEeEEEEe--cCCcEEEEECCCCCCHHHHHHHHHHHH---HHHhCCCEEEcCceEEecc-------ceEEEE---ec
Confidence 35677888888 899999999999999999999999953 22333431 0111111 111000 01
Q ss_pred CChhhhhhhhhHH--HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHH-HHHHHHHhhCCCCcEEEEEecCCC
Q 039839 101 SDSRERGEDDTTF--EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKT-VFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 101 ~~~~er~e~~~~~--ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~-V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
.. ....+....| |-+++.-...-+ .++|+|||.+|.+... ... ...++..+.+..+.++|++||+++
T Consensus 83 ~~-d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d------~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 83 AS-DSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHD------GIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred Cc-cccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh------HHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 00 0111112333 334433333333 8999999999888665 333 344555555434789999999998
Q ss_pred Ccc
Q 039839 175 KTP 177 (825)
Q Consensus 175 ~a~ 177 (825)
+..
T Consensus 156 l~~ 158 (222)
T cd03287 156 LGE 158 (222)
T ss_pred HHH
Confidence 754
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.90 E-value=1.9e-09 Score=131.19 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=77.2
Q ss_pred cccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----cceeeEEcCCCccchhHHHHHHhhCCChhh
Q 039839 31 TKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----QTTKGIWIAKCVGIEPFTIAMDLEGSDSRE 105 (825)
Q Consensus 31 isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----q~~~G~~~~~~t~~enl~l~ld~~g~~~~e 105 (825)
+++.+ +...++++|.||||+|||||||+|+|... -+..|-. ....+++.+..+ ..|. ...
T Consensus 314 ~di~l-~~~~~~liItGpNg~GKSTlLK~i~~~~l---~aq~G~~Vpa~~~~~~~~~d~i~~----------~i~~-~~s 378 (771)
T TIGR01069 314 FTLNL-KFEKRVLAITGPNTGGKTVTLKTLGLLAL---MFQSGIPIPANEHSEIPYFEEIFA----------DIGD-EQS 378 (771)
T ss_pred ceeEe-CCCceEEEEECCCCCCchHHHHHHHHHHH---HHHhCCCccCCccccccchhheee----------ecCh-HhH
Confidence 34444 22347999999999999999999998731 1122210 011222111100 0010 011
Q ss_pred hhhhhhH---HHHHHHHHHHHHH--HHheecCCCCCCccccccCHHHHHHH-HHHHHHhhCCCCcEEEEEecCCCCcc
Q 039839 106 RGEDDTT---FEKQSALFALAIA--DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLLFVIRDKTKTP 177 (825)
Q Consensus 106 r~e~~~~---~ErQRv~iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V-~elL~~L~~~~g~TIL~VTHDl~~a~ 177 (825)
..+.... .+++++.|++++. .++|+|||++|+|+.. ...+ ..++..+.+. |+++|++||+.++..
T Consensus 379 i~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~e------g~ala~aiLe~l~~~-g~~viitTH~~eL~~ 449 (771)
T TIGR01069 379 IEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDE------GSALAISILEYLLKQ-NAQVLITTHYKELKA 449 (771)
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHhc-CCEEEEECChHHHHH
Confidence 1112222 3777777777665 9999999999999988 6666 4566666554 899999999987653
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.88 E-value=1.6e-09 Score=120.00 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=95.8
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCCCcc-----------------chhHHHHHHhh
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAKCVG-----------------IEPFTIAMDLE 99 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~~t~-----------------~enl~l~ld~~ 99 (825)
+-+++..+|.||.|||||+++++|. +.|..|.. .-.+.|+.|.... ..+..|+-++.
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~----~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvm 441 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGR----LKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVM 441 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcC----CCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhh
Confidence 3458999999999999999999997 55665542 2334555554321 11111221111
Q ss_pred C-CChhh-hh---hhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEec
Q 039839 100 G-SDSRE-RG---EDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIR 171 (825)
Q Consensus 100 g-~~~~e-r~---e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTH 171 (825)
. +.... .. ....+.|.|||++|++|- ++.++|||..-||.|+ +...-.++++..-..++|-.+|.|
T Consensus 442 kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQ------Ri~AskvikRfilhakktafvVEh 515 (592)
T KOG0063|consen 442 KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQ------RIIASKVIKRFILHAKKTAFVVEH 515 (592)
T ss_pred hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHH------HHHHHHHHHHHHHhccchhhhhhh
Confidence 0 00000 00 112334999999999997 9999999999999999 888888888877556899999999
Q ss_pred CCCCccccccCcEEEEe
Q 039839 172 DKTKTPLEYLEPILRED 188 (825)
Q Consensus 172 Dl~~a~l~~~drvlvl~ 188 (825)
|+-.+. ..+||+++.+
T Consensus 516 dfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 516 DFIMAT-YLADRVIVFE 531 (592)
T ss_pred HHHHHH-hhcceeEEEe
Confidence 997664 4699998876
No 421
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.86 E-value=1.7e-09 Score=133.45 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE-
Q 039839 114 EKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE- 187 (825)
Q Consensus 114 ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl- 187 (825)
|+||+.||++|+ +++||||||+|||+.. ...++++|++|.++ |.|||+|+||++.+. .||++++|
T Consensus 494 E~QRv~LA~aL~~~~~~~llILDEPtagLd~~~------~~~L~~~L~~L~~~-G~TVIvVeH~~~~i~--~aD~vi~Lg 564 (943)
T PRK00349 494 EAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NDRLIETLKHLRDL-GNTLIVVEHDEDTIR--AADYIVDIG 564 (943)
T ss_pred HHHHHHHHHHHhhCCCCcEEEecCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH--hCCEEEEec
Confidence 999999999998 5899999999999999 99999999999865 999999999998775 69999999
Q ss_pred -----eCCeEEEecCcccccC
Q 039839 188 -----DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 -----~~GkI~~~g~~~e~l~ 203 (825)
++|+|+..|++.++..
T Consensus 565 pgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 565 PGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred cccCCCCCEEeeccCHHHHhc
Confidence 8999999998777643
No 422
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=1.7e-08 Score=108.69 Aligned_cols=67 Identities=12% Similarity=0.209 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHH------------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccccc
Q 039839 114 EKQSALFALAIA------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYL 181 (825)
Q Consensus 114 ErQRv~iArALa------------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~ 181 (825)
|+|+++||++++ +++|+|||+++||+.. +..+++.+.++. .+++++|+..... .+|
T Consensus 188 q~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~------~~~l~~~l~~~~-----q~ii~~~~~~~~~-~~~ 255 (270)
T cd03242 188 QQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGR------QAALLDAIEGRV-----QTFVTTTDLADFD-ALW 255 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHH------HHHHHHHhhcCC-----CEEEEeCCchhcc-chh
Confidence 999999999973 7999999999999999 998988887652 3566666664432 256
Q ss_pred ---CcEEEEeCCeE
Q 039839 182 ---EPILREDIQKI 192 (825)
Q Consensus 182 ---drvlvl~~GkI 192 (825)
.+++.+++|+|
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68899999986
No 423
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=2e-09 Score=132.61 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 113 FEKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 113 ~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
+|+||+.||++|+ +++||||||+|||+.. ...++++|++|.++ |.|||+|+||++.+. .||++++|
T Consensus 491 GE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~------~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~--~aD~vi~L 561 (924)
T TIGR00630 491 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NERLINTLKRLRDL-GNTVIVVEHDEETIR--AADYVIDI 561 (924)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh--hCCEEEEe
Confidence 3999999999998 4999999999999999 99999999999876 999999999998775 79999999
Q ss_pred ------eCCeEEEecCccccc
Q 039839 188 ------DIQKIWDAVPKPQTL 202 (825)
Q Consensus 188 ------~~GkI~~~g~~~e~l 202 (825)
++|+|+..|++.++.
T Consensus 562 gpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 562 GPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred cccccCCCCEEeeccCHHHHh
Confidence 899999999877654
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.84 E-value=1.9e-08 Score=104.35 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccccc
Q 039839 109 DDTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYL 181 (825)
Q Consensus 109 ~~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~ 181 (825)
....+||.+++||.-+| +++||||+.++||... ++.+.++|.++.+ +.-+|++||+..... .+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~------~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~--~a 205 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQN------RKRLADLLKELSK--QSQFIITTHNPEMFE--DA 205 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHH------HHHHHHHHHHHTT--TSEEEEE-S-HHHHT--T-
T ss_pred cccccccccccccccccccccccccccccccccccccccc------ccccccccccccc--ccccccccccccccc--cc
Confidence 34566999999998776 8999999999999999 9999999999875 477999999987665 67
Q ss_pred CcEEEE
Q 039839 182 EPILRE 187 (825)
Q Consensus 182 drvlvl 187 (825)
++.+.+
T Consensus 206 ~~~~~v 211 (220)
T PF02463_consen 206 DKLIGV 211 (220)
T ss_dssp SEEEEE
T ss_pred cccccc
Confidence 766554
No 425
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.82 E-value=2.2e-09 Score=112.73 Aligned_cols=197 Identities=40% Similarity=0.594 Sum_probs=109.0
Q ss_pred cCCCcEEEEECCCCCChhHHHHHHHhc--ccccCCcCCCcccceeeEEcCCCcc---chhHHHHHHhhCCChhhhhhhhh
Q 039839 37 GLSYAVVAIMGPQSSGKSTLMNHLFHT--NFREMDAFRGRSQTTKGIWIAKCVG---IEPFTIAMDLEGSDSRERGEDDT 111 (825)
Q Consensus 37 g~~GeivaIiGpNGSGKSTLLn~L~Gl--~~~~~~~~~G~~q~~~G~~~~~~t~---~enl~l~ld~~g~~~~er~e~~~ 111 (825)
+.+..+|+|+|+.++|||||||.|+|. .+.... +..++|.|+|+..... .+...+.+|.+|.+..++.+ .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~---~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~ 78 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD---TSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--F 78 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC---CCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--h
Confidence 355568999999999999999999998 544322 2246788998654332 13445667888988776654 1
Q ss_pred HHHHHHHHHHHHHHHHheecCCCCCCccccccCHHHHHHHH----HHHHHhhCCCCcEEEEEecCCCCc-cccccCcE--
Q 039839 112 TFEKQSALFALAIADIVLINMWCHDIGREQAANKPLLKTVF----QVMMRLFSPRKTTLLFVIRDKTKT-PLEYLEPI-- 184 (825)
Q Consensus 112 ~~ErQRv~iArALa~VLLLDEPtsgLD~Epta~~~~~~~V~----elL~~L~~~~g~TIL~VTHDl~~a-~l~~~drv-- 184 (825)
....+..++|..+++++|.+-+.+-.+.+-.+...+.+... ........++...+++|.+|.... +.+.-+..
T Consensus 79 ~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~~~ 158 (224)
T cd01851 79 EDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDITEG 158 (224)
T ss_pred hhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCccccccccccc
Confidence 22334555555557999999766555443322222222211 111122234578899999999543 21111100
Q ss_pred ---EEEeCCeEEEecCcccccCCcccccccccccccccc--------cccchhhHHHHHHHHhhhhcc
Q 039839 185 ---LREDIQKIWDAVPKPQTLKNTPLSEFFNVEVTALSS--------YEEKEGQFKEQVAELRQRFFH 241 (825)
Q Consensus 185 ---lvl~~GkI~~~g~~~e~l~~~~l~d~f~~~~~~l~h--------~~~~~~~F~~~v~~Lr~~f~~ 241 (825)
...+..+||....++.. ..-.+.|-+...+..+ ....+++|.+++..|+++|..
T Consensus 159 ~~~~~~~~~~ir~~l~~~f~---~~~~~cf~l~~p~~~~~~~~~~~~~~~l~~eF~~~l~~L~~~~~~ 223 (224)
T cd01851 159 RETLIEDLNKIWSSIRKPFE---NPPIDCFFLPRPGLLHHLLQNEGRLKLLPPEFLEALKELRDRFFS 223 (224)
T ss_pred cchhHHHHHHHHHHHHhhcc---CCcchheeccccccchhhcccccchhhCCHHHHHHHHHHHHHhcC
Confidence 00011122222211110 0112233332222222 345577999999999999863
No 426
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.78 E-value=4.8e-09 Score=109.77 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=76.3
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE---cCCCccchhHHHHHH
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW---IAKCVGIEPFTIAMD 97 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~---~~~~t~~enl~l~ld 97 (825)
..+.+++++.. ..|++++|.||||+|||||++.+.+... |. ..|-. ...++++ +......+++
T Consensus 17 ~~v~ndi~l~~--~~~~~~~itG~n~~gKs~~l~~i~~~~~--la-~~G~~vpa~~~~i~~~~~i~~~~~~~d~~----- 86 (218)
T cd03286 17 SFVPNDVDLGA--TSPRILVLTGPNMGGKSTLLRTVCLAVI--MA-QMGMDVPAKSMRLSLVDRIFTRIGARDDI----- 86 (218)
T ss_pred CeEEeeeEEee--cCCcEEEEECCCCCchHHHHHHHHHHHH--HH-HcCCccCccccEeccccEEEEecCccccc-----
Confidence 35677888888 8899999999999999999999988642 11 11110 0111111 1111111111
Q ss_pred hhCCChhhhhhhhhHH--HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHH-HHHhhCCCCcEEEEEec
Q 039839 98 LEGSDSRERGEDDTTF--EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLLFVIR 171 (825)
Q Consensus 98 ~~g~~~~er~e~~~~~--ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~el-L~~L~~~~g~TIL~VTH 171 (825)
......| |-+++.-....+ .++|+|||+.|+++.. ...+... +..|.+..+.++|++||
T Consensus 87 ---------~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~d------g~~la~ail~~L~~~~~~~~i~~TH 151 (218)
T cd03286 87 ---------MKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHD------GYAIAHAVLEYLVKKVKCLTLFSTH 151 (218)
T ss_pred ---------ccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchH------HHHHHHHHHHHHHHhcCCcEEEEec
Confidence 1111233 333333332323 8999999999998877 4444444 34444323899999999
Q ss_pred CCCCcc
Q 039839 172 DKTKTP 177 (825)
Q Consensus 172 Dl~~a~ 177 (825)
+++.+.
T Consensus 152 ~~el~~ 157 (218)
T cd03286 152 YHSLCD 157 (218)
T ss_pred cHHHHH
Confidence 997764
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.70 E-value=1.9e-08 Score=122.78 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=78.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----cceeeEEcCCCccchhHHHHHHhhCCChhhhhh---h
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGE---D 109 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e---~ 109 (825)
..+.++.|.|||++||||+|+.+..... | ...|-. ...++++ +++.. + .|.. ..... .
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~--m-aq~G~~vpa~~~~~i~~~-------~~i~~--~-ig~~-~si~~~lSt 390 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAAL--M-AKSGLPIPANEPSEIPVF-------KEIFA--D-IGDE-QSIEQSLST 390 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHH--H-HHhCCCcccCCCcccccc-------ceEEE--e-cCCc-cchhhchhH
Confidence 4567899999999999999999865421 1 111110 0111111 11110 0 0110 11111 1
Q ss_pred hhHHHHHHHHHHHHHH--HHheecCCCCCCccccccCHHHHHHHHH-HHHHhhCCCCcEEEEEecCCCCccccccCcEEE
Q 039839 110 DTTFEKQSALFALAIA--DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILR 186 (825)
Q Consensus 110 ~~~~ErQRv~iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V~e-lL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlv 186 (825)
....|+|++.|++++. .++|+|||++|+|+.. ...+.. ++..+... |.++|++||+.+... ..+++..+
T Consensus 391 fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~e------g~ala~aile~l~~~-~~~vIitTH~~el~~-~~~~~~~v 462 (782)
T PRK00409 391 FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDE------GAALAISILEYLRKR-GAKIIATTHYKELKA-LMYNREGV 462 (782)
T ss_pred HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHHC-CCEEEEECChHHHHH-HHhcCCCe
Confidence 2333889999998877 9999999999999887 666644 45555544 899999999987764 23454433
Q ss_pred E
Q 039839 187 E 187 (825)
Q Consensus 187 l 187 (825)
+
T Consensus 463 ~ 463 (782)
T PRK00409 463 E 463 (782)
T ss_pred E
Confidence 3
No 428
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.66 E-value=6.8e-08 Score=110.61 Aligned_cols=153 Identities=16% Similarity=0.081 Sum_probs=87.9
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhh
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRE 105 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~e 105 (825)
.+++.+ +.+ .+|++++|+|+||+|||||+++|+|.. .+..|.. .+.=.. ..+-..+.....+.....
T Consensus 147 ~vid~l-~~i--~~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI----~~~Ger--g~ev~e~~~~~l~~~~l~ 213 (438)
T PRK07721 147 RAIDSL-LTV--GKGQRVGIFAGSGVGKSTLMGMIARNT----SADLNVI----ALIGER--GREVREFIERDLGPEGLK 213 (438)
T ss_pred hhhhee-eee--cCCcEEEEECCCCCCHHHHHHHHhccc----CCCeEEE----EEEecC--CccHHHHHHhhcChhhhc
Confidence 467788 888 999999999999999999999999984 3333320 000000 000000000000000000
Q ss_pred h------hhhhhHHHHHH-HH-------------------------HHHHHHHH-heecCC--CCCCccccccCHHHHHH
Q 039839 106 R------GEDDTTFEKQS-AL-------------------------FALAIADI-VLINMW--CHDIGREQAANKPLLKT 150 (825)
Q Consensus 106 r------~e~~~~~ErQR-v~-------------------------iArALa~V-LLLDEP--tsgLD~Epta~~~~~~~ 150 (825)
+ ..+....+|-+ .. +|+|+-+| +.+.|| +.|+|+.. ...
T Consensus 214 r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~------~~~ 287 (438)
T PRK07721 214 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSV------FAI 287 (438)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHH------HHH
Confidence 0 00000112222 12 22233222 223454 24444444 888
Q ss_pred HHHHHHHhhC-CCCc-----EEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 151 VFQVMMRLFS-PRKT-----TLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 151 V~elL~~L~~-~~g~-----TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+.+++.++.. ..|. ||++.+||++. + +||++..+.+|+|+.+++..+
T Consensus 288 l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~--i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 288 LPKLLERTGTNASGSITAFYTVLVDGDDMNE-P--IADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-h--hhhhEEEecCEEEEEeccHHH
Confidence 8888888874 2475 99999999984 4 899999999999999987543
No 429
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.62 E-value=2.4e-07 Score=93.68 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=49.1
Q ss_pred HHHHHHHHH--HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc-cCcEEEEeCC
Q 039839 117 SALFALAIA--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY-LEPILREDIQ 190 (825)
Q Consensus 117 Rv~iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~-~drvlvl~~G 190 (825)
-..|.+.+- -+.|||||.++|-+-- +-.+...|.++.+. |.-+||+||..-+.. + --+|+-++.+
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~R------Qlella~l~~la~s-GaQ~IiATHSPiLlA--iP~A~I~~~~~~ 204 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSR------QLELLAILRDLADS-GAQIIIATHSPILLA--IPGAEIYEISES 204 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHH------HHHHHHHHHHHHhc-CCeEEEEecChhhee--CCCcEEEEEecC
Confidence 344555555 8999999999998887 99999999999987 999999999985443 2 3345555443
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.51 E-value=5.7e-07 Score=94.89 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred ccccCCCcEEEEECCCCCChhHH-HHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhhh----
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTL-MNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGE---- 108 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTL-Ln~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e---- 108 (825)
++ ++|+++.|+|++||||||| ++.++|.. . .|. ...|+-...+..+.+.. +...|.+-.+...
T Consensus 20 gi--~~g~~~~i~G~~G~GKTtl~~~~~~~~~----~--~g~---~~~yi~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l 87 (230)
T PRK08533 20 GI--PAGSLILIEGDESTGKSILSQRLAYGFL----Q--NGY---SVSYVSTQLTTTEFIKQ-MMSLGYDINKKLISGKL 87 (230)
T ss_pred CC--CCCcEEEEECCCCCCHHHHHHHHHHHHH----h--CCC---cEEEEeCCCCHHHHHHH-HHHhCCchHHHhhcCcE
Confidence 46 7888999999999999999 68888873 1 132 12222222222111111 1112221110000
Q ss_pred -------hhhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 039839 109 -------DDTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 109 -------~~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
.....+.++..+.+.+. +++++|||++.+.... .+...+.++++++.+.+. |.|++ +||+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~--d~~~~~~l~~~l~~l~~~-g~tvi-~t~~~~ 163 (230)
T PRK08533 88 LYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDA--SEVAVNDLMAFFKRISSL-NKVII-LTANPK 163 (230)
T ss_pred EEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCc--chHHHHHHHHHHHHHHhC-CCEEE-EEeccc
Confidence 00011222222222222 7899999999883210 022367889999888765 77554 466653
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.47 E-value=2.3e-07 Score=95.94 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHH---HHheecCCC-----CCCccccccCHHHHHHHHHHHHHhhC
Q 039839 114 EKQSALFALAIA---DIVLINMWC-----HDIGREQAANKPLLKTVFQVMMRLFS 160 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPt-----sgLD~Epta~~~~~~~V~elL~~L~~ 160 (825)
+++++.||++++ +++++|||| ++||+.. +..+.+.+++++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~------~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPEL------VAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHH------HHHHHHHHHHHhh
Confidence 888999999999 999999999 9999999 9999999999864
No 432
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.39 E-value=3e-07 Score=93.45 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCC
Q 039839 112 TFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTK 175 (825)
Q Consensus 112 ~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~ 175 (825)
.+++|.+.++..+. .++++|||..+|.|.- ++.+.+.+.++.. .+.-+|++||...+
T Consensus 239 ~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~------q~~l~~~l~~~~~-~~~QviitTHSp~i 301 (303)
T PF13304_consen 239 SGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSW------QRKLIELLKELSK-KNIQVIITTHSPFI 301 (303)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHH------HHHHHHHHHHTGG-GSSEEEEEES-GGG
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHH------HHHHHHHHHhhCc-cCCEEEEeCccchh
Confidence 34788877777776 5799999999999888 9999999988876 47899999998654
No 433
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.39 E-value=1e-06 Score=88.54 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=43.6
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCc--------cccccCcEEEEe
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT--------PLEYLEPILRED 188 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a--------~l~~~drvlvl~ 188 (825)
+++++|+|+..+|.. .......+.+++..+.+. |+|+|+++|+.... ...+||.++.++
T Consensus 97 ~~lviD~~~~~~~~~---~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 97 KRVVIDSVSGLLLME---QSTARLEIRRLLFALKRF-GVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CEEEEeCcHHHhhcC---hHHHHHHHHHHHHHHHHC-CCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 899999999998831 133367777888888765 99999999988531 124588888776
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.36 E-value=4.7e-07 Score=100.76 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
|-||.+||.+.+ |+.++|||.+.||..+ +..-...++.|... ..-||+|.||++... ...|-+.++.
T Consensus 218 elqrfaia~~~vq~advyMFDEpSsYLDVKQ------RLkaA~~IRsl~~p-~~YiIVVEHDLsVLD-ylSDFiCcLY 287 (592)
T KOG0063|consen 218 ELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ------RLKAAITIRSLINP-DRYIIVVEHDLSVLD-YLSDFICCLY 287 (592)
T ss_pred hhhhhhhhhhhhhhcceeEecCCcccchHHH------hhhHHHHHHHhhCC-CCeEEEEEeechHHH-hhhcceeEEe
Confidence 889999998887 9999999999999999 88888899999876 789999999998875 3577888887
No 435
>PRK13695 putative NTPase; Provisional
Probab=98.35 E-value=3.9e-07 Score=91.54 Aligned_cols=133 Identities=12% Similarity=0.202 Sum_probs=76.6
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHH-------------HhhCC-Chh---
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAM-------------DLEGS-DSR--- 104 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~l-------------d~~g~-~~~--- 104 (825)
.++|.|++|||||||++.|.+.. .+ .|. ...|++.+.... ..-...+ ...+. +..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l----~~-~G~--~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 73 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL----KE-EGY--KVGGFYTEEVRE-GGKRIGFKIIDLDTGEEGILARVGFPSRPRVG 73 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----HH-CCC--eEEEEEcHHHHh-cCCccceEEEEcCCCCeEEccccCCCCCCcee
Confidence 47999999999999999987752 11 122 112333211000 0000000 00011 100
Q ss_pred hhhhhhhHHHHHHHHHHHHHH---HHheecCC--CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccc
Q 039839 105 ERGEDDTTFEKQSALFALAIA---DIVLINMW--CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLE 179 (825)
Q Consensus 105 er~e~~~~~ErQRv~iArALa---~VLLLDEP--tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~ 179 (825)
........+++-+..+++... ++||+||| +..++ ..+.+.+.++.+ .+.++|+|+|+.....
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----------~~~~~~l~~~~~-~~~~~i~v~h~~~~~~-- 140 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----------PKFVKAVEEVLD-SEKPVIATLHRRSVHP-- 140 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----------HHHHHHHHHHHh-CCCeEEEEECchhhHH--
Confidence 011123455777777666554 99999984 22222 334566666664 4899999999965544
Q ss_pred ccCcEEEEeCCeEEEe
Q 039839 180 YLEPILREDIQKIWDA 195 (825)
Q Consensus 180 ~~drvlvl~~GkI~~~ 195 (825)
.++++..+.+|+|..-
T Consensus 141 ~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 141 FVQEIKSRPGGRVYEL 156 (174)
T ss_pred HHHHHhccCCcEEEEE
Confidence 7999999999988654
No 436
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=2.6e-06 Score=82.35 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=61.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHH---HhhCCChhh----h-hhhhhHH
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAM---DLEGSDSRE----R-GEDDTTF 113 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~l---d~~g~~~~e----r-~e~~~~~ 113 (825)
++.|.||+|+|||||++.+++.. ....+. +.+.-..... ......+ ...+..... . .......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~----~~~~~~----v~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI----ATKGGK----VVYVDIEEEI-EELTERLIGESLKGALDNLIIVFATADDPAAA 71 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH----HhcCCE----EEEEECCcch-HHHHHHHhhhhhccccccEEEEEcCCCCCcHH
Confidence 37899999999999999999873 222121 2222111111 1111100 000000000 0 0000111
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccc--cC--HHHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQA--AN--KPLLKTVFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Ept--a~--~~~~~~V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
..++...+++.. +++++||+..-++.+.. .+ ......+.+++... ++.+.|+|+++|...
T Consensus 72 ~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~ 138 (165)
T cd01120 72 RLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPS 138 (165)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCC
Confidence 223344454444 89999988865544321 11 22345555555444 445999999999884
No 437
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.26 E-value=5e-07 Score=99.33 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=86.0
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCC---ccch-hHHHHHHhhCCChhhhhh
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKC---VGIE-PFTIAMDLEGSDSRERGE 108 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~---t~~e-nl~l~ld~~g~~~~er~e 108 (825)
+.+ ..|..++|.||+|||||||+++|+|.. ++..+- .. +... .... |... + ..... ..+.
T Consensus 139 ~~v--~~~~~ili~G~tGsGKTTll~al~~~~----~~~~~i-----v~-ied~~El~~~~~~~~~-l-~~~~~--~~~~ 202 (308)
T TIGR02788 139 LAI--ASRKNIIISGGTGSGKTTFLKSLVDEI----PKDERI-----IT-IEDTREIFLPHPNYVH-L-FYSKG--GQGL 202 (308)
T ss_pred HHh--hCCCEEEEECCCCCCHHHHHHHHHccC----CccccE-----EE-EcCccccCCCCCCEEE-E-EecCC--CCCc
Confidence 445 678899999999999999999999983 333221 11 1100 0000 0000 0 00000 0000
Q ss_pred hhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEE
Q 039839 109 DDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPIL 185 (825)
Q Consensus 109 ~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvl 185 (825)
..+ ...-+++.+|- +++++|||.+ .++++++..+... +.+++.++|..+... ..+|+.
T Consensus 203 --~~~-~~~~~l~~~Lr~~pd~ii~gE~r~-------------~e~~~~l~a~~~g-~~~~i~T~Ha~~~~~--~~~Rl~ 263 (308)
T TIGR02788 203 --AKV-TPKDLLQSCLRMRPDRIILGELRG-------------DEAFDFIRAVNTG-HPGSITTLHAGSPEE--AFEQLA 263 (308)
T ss_pred --Ccc-CHHHHHHHHhcCCCCeEEEeccCC-------------HHHHHHHHHHhcC-CCeEEEEEeCCCHHH--HHHHHH
Confidence 000 01113344444 9999997763 2455666666532 346799999998654 689998
Q ss_pred EEeCCeEEEecCcccccCCccccccccccc
Q 039839 186 REDIQKIWDAVPKPQTLKNTPLSEFFNVEV 215 (825)
Q Consensus 186 vl~~GkI~~~g~~~e~l~~~~l~d~f~~~~ 215 (825)
.+..|++...|.+.+.+ ...+.+.|++-+
T Consensus 264 ~l~~~~~~~~g~~~~~~-~~~i~~~~d~ii 292 (308)
T TIGR02788 264 LMVKSSQAGLGLDFAYI-VKLVREVIDIVV 292 (308)
T ss_pred HHhhccccccCCCHHHH-HHHHHHhCCEEE
Confidence 88888888888777766 355666666544
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=3.4e-06 Score=90.20 Aligned_cols=67 Identities=12% Similarity=-0.006 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 114 EKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 114 ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
.+||+.+|+++. .|++| +|..+|...- ...++ +..+.. .+.|.|+++|++.... ..+.|.+++.|
T Consensus 142 ~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~-----~~~~i--~~~~~~-~~~~~ivls~~la~~~--~~paI~vl~s~ 209 (249)
T cd01128 142 PKRFFGAARNIEEGGSLTII--ATALVDTGSR-----MDDVI--FEEFKG-TGNMELVLDRRLAERR--IFPAIDILKSG 209 (249)
T ss_pred hHHHHHHhcCCCCCCceEEe--eeheecCCCc-----ccchH--HHHHhc-CCCcEEEEchHHhhCC--CCCeEEEcCCC
Confidence 499999999985 89999 9999995441 11122 333433 3789999999997775 78999999999
Q ss_pred eE
Q 039839 191 KI 192 (825)
Q Consensus 191 kI 192 (825)
.+
T Consensus 210 sr 211 (249)
T cd01128 210 TR 211 (249)
T ss_pred Cc
Confidence 87
No 439
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.20 E-value=1.2e-06 Score=103.80 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 111 TTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 111 ~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
..+|+||++||++++ ++||+|||++|||... ...+.+.+.++.+ +.+||+|||++..+. .||+
T Consensus 442 SgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~------~~~~~~~l~~l~~--~~~vi~iTH~~~~~~--~ad~ 511 (563)
T TIGR00634 442 SGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGET------AQAIAKKLAQLSE--RHQVLCVTHLPQVAA--HADA 511 (563)
T ss_pred CHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEEChHHHHH--hcCe
Confidence 455999999999987 4999999999999999 9999999999974 799999999998775 7999
Q ss_pred EEEEeCCe
Q 039839 184 ILREDIQK 191 (825)
Q Consensus 184 vlvl~~Gk 191 (825)
++++++|.
T Consensus 512 ~~~l~k~~ 519 (563)
T TIGR00634 512 HFKVEKEG 519 (563)
T ss_pred EEEEEEcc
Confidence 99998764
No 440
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.13 E-value=9.9e-06 Score=85.22 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=70.3
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHHH-hcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhh----
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHLF-HTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRER---- 106 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L~-Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er---- 106 (825)
.=++ +.|.++.|.|++|||||||...++ +.. ..|+ ..-|+-...+ .+.+.--+...|.+-.+.
T Consensus 19 ~gG~--~~g~~~~i~G~~GsGKt~l~~~~~~~~~------~~g~---~~~y~~~e~~-~~~~~~~~~~~g~~~~~~~~~g 86 (234)
T PRK06067 19 GGGI--PFPSLILIEGDHGTGKSVLSQQFVYGAL------KQGK---KVYVITTENT-SKSYLKQMESVKIDISDFFLWG 86 (234)
T ss_pred CCCC--cCCcEEEEECCCCCChHHHHHHHHHHHH------hCCC---EEEEEEcCCC-HHHHHHHHHHCCCChhHHHhCC
Confidence 3467 889999999999999999998873 321 1232 1112211111 111111112222211110
Q ss_pred -----------hhhhhHHHHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEe
Q 039839 107 -----------GEDDTTFEKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVI 170 (825)
Q Consensus 107 -----------~e~~~~~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VT 170 (825)
.......+.+.+..+..++ +++++|+|+..++... ......+++.++.+.+. |.|+|+++
T Consensus 87 ~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~---~~~~~~~l~~l~~l~~~-g~tvllt~ 162 (234)
T PRK06067 87 YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAE---EDDILNFLTEAKNLVDL-GKTILITL 162 (234)
T ss_pred CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC---HHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 0000112345555565555 7999999996554332 22245555566666665 89999999
Q ss_pred cCCCC
Q 039839 171 RDKTK 175 (825)
Q Consensus 171 HDl~~ 175 (825)
|+...
T Consensus 163 ~~~~~ 167 (234)
T PRK06067 163 HPYAF 167 (234)
T ss_pred cCCcC
Confidence 98754
No 441
>PRK10869 recombination and repair protein; Provisional
Probab=98.08 E-value=3.9e-06 Score=99.25 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 111 TTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 111 ~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
..+|+||++||++++ +++|+|||++|||... ...+.+.++++.+ +.+||+|||++..+. +||+
T Consensus 432 SgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~------~~~v~~~l~~l~~--~~qvi~iTH~~~~~~--~ad~ 501 (553)
T PRK10869 432 SGGELSRIALAIQVITARKMETPALIFDEVDVGISGPT------AAVVGKLLRQLGE--STQVMCVTHLPQVAG--CGHQ 501 (553)
T ss_pred CHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHH--hCCE
Confidence 456999999999998 5999999999999998 9999999999964 689999999998775 8999
Q ss_pred EEEEeCC
Q 039839 184 ILREDIQ 190 (825)
Q Consensus 184 vlvl~~G 190 (825)
.+.+.++
T Consensus 502 ~~~v~k~ 508 (553)
T PRK10869 502 HFFVSKE 508 (553)
T ss_pred EEEEecc
Confidence 9988764
No 442
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.03 E-value=3.3e-06 Score=78.89 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=31.5
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHH
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLF 61 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~ 61 (825)
.+++++++.+ .+|++++|+||||||||||++++.
T Consensus 3 ~aL~~vsl~i--~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDV--YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEE--cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 5688899999 999999999999999999999976
No 443
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.98 E-value=6.4e-06 Score=101.98 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=70.0
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhCCC
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEGSD 102 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g~~ 102 (825)
+-.++.++ ..+.++.|.|||++||||+||.++-... |. ..|.. ..+++++ +.+.. -.|..
T Consensus 597 vpnd~~l~---~~~~~~iiTGpN~~GKSt~lr~v~l~~i--lA-q~G~~VPa~~a~i~~~-------d~I~t---riga~ 660 (854)
T PRK05399 597 VPNDCDLD---EERRLLLITGPNMAGKSTYMRQVALIVL--LA-QIGSFVPAESARIGIV-------DRIFT---RIGAS 660 (854)
T ss_pred EecceeeC---CCCcEEEEECCCCCCcHHHHHHHHHHHH--HH-hcCCceeccceEeccc-------Ceeee---ccCcc
Confidence 34455554 4567999999999999999999865421 11 11210 0112211 11110 01111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH-----HHheecCC---CCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 039839 103 SRERGEDDTTFEKQSALFALAIA-----DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 103 ~~er~e~~~~~ErQRv~iArALa-----~VLLLDEP---tsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
. ........|+.....++..+. .++|+||| |+.+| | ....+.++..+.+..|.++||+||+.+
T Consensus 661 d-~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d-----g---~aia~aile~l~~~~~~~~l~aTH~~e 731 (854)
T PRK05399 661 D-DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD-----G---LSIAWAVAEYLHDKIGAKTLFATHYHE 731 (854)
T ss_pred c-ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch-----h---HHHHHHHHHHHHhcCCceEEEEechHH
Confidence 1 111123556555555665554 89999999 55555 1 223444445555443689999999987
Q ss_pred Ccc
Q 039839 175 KTP 177 (825)
Q Consensus 175 ~a~ 177 (825)
+..
T Consensus 732 l~~ 734 (854)
T PRK05399 732 LTE 734 (854)
T ss_pred HHH
Confidence 654
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.97 E-value=3.7e-06 Score=96.31 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=36.2
Q ss_pred ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCC
Q 039839 24 LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG 73 (825)
Q Consensus 24 l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G 73 (825)
+..++++|++.+ .+|++++|+|||||||||||+ .|+ +.+.+|
T Consensus 18 l~~vL~~Vsl~i--~~GEiv~L~G~SGsGKSTLLr--~~l----~~~~sG 59 (504)
T TIGR03238 18 LERILVKFNKEL--PSSSLLFLCGSSGDGKSEILA--ENK----RKFSEG 59 (504)
T ss_pred HHHHHhCCceee--cCCCEEEEECCCCCCHHHHHh--cCC----CCCCCC
Confidence 456899999999 999999999999999999999 566 445555
No 445
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.97 E-value=8e-06 Score=96.47 Aligned_cols=68 Identities=13% Similarity=0.263 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHH-------------HHheecCCC-CCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccc
Q 039839 114 EKQSALFALAIA-------------DIVLINMWC-HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLE 179 (825)
Q Consensus 114 ErQRv~iArALa-------------~VLLLDEPt-sgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~ 179 (825)
|+||++||++++ ++||||||| ++||... ...+.+.+.++ + |.|||+|||+.....
T Consensus 473 e~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~------~~~~~~~l~~~--~-~~~iiiish~~~~~~-- 541 (562)
T PHA02562 473 EKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEG------TKALLSILDSL--K-DTNVFVISHKDHDPQ-- 541 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhH------HHHHHHHHHhC--C-CCeEEEEECchhchh--
Confidence 999999998874 799999998 7899999 99999999998 3 789999999987664
Q ss_pred ccCcEEEEeC-CeE
Q 039839 180 YLEPILREDI-QKI 192 (825)
Q Consensus 180 ~~drvlvl~~-GkI 192 (825)
.||+++++.. |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7899998875 543
No 446
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=8.8e-06 Score=103.16 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHHHHHHH-------------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 039839 108 EDDTTFEKQSALFALAIA-------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 108 e~~~~~ErQRv~iArALa-------------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
.....+|++||.||+||+ ++|||||||++||++. +..++++|.++.. .|.+|+||||+++
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~------~~~~~~~l~~l~~-~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDS------LDRAIGILDAIRE-GSKMIGIISHVPE 1021 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 345677999999999985 5899999999999999 9999999999987 4999999999998
Q ss_pred CccccccCcEEEEeCC
Q 039839 175 KTPLEYLEPILREDIQ 190 (825)
Q Consensus 175 ~a~l~~~drvlvl~~G 190 (825)
+.. .+|++|+++..|
T Consensus 1022 ~~~-~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1022 FRE-RIPHRILVKKTN 1036 (1042)
T ss_pred HHH-hhCCEEEEEECC
Confidence 774 579999999754
No 447
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.90 E-value=3e-05 Score=89.23 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=32.1
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+++.+ +.+ .+|++++|+|+||+|||||+++|+|..
T Consensus 152 ~~iD~l-~~i--~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 152 RSIDGL-LTV--GKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred eeeeec-ccc--CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466676 888 899999999999999999999999983
No 448
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.85 E-value=1.4e-05 Score=84.86 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=62.4
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhCCC
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEGSD 102 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g~~ 102 (825)
+-.++.++. ..+.++.|.|||.+||||+||.|+-... |. .-|-. ...++++ +.+.. ..+..
T Consensus 32 v~ndi~~~~--~~~~~~iiTGpN~sGKSt~lk~i~~~~i--la-q~G~~VPA~~~~i~~~-------d~I~t---~~~~~ 96 (235)
T PF00488_consen 32 VPNDIELSN--NKSRIIIITGPNMSGKSTFLKQIGLIVI--LA-QIGCFVPAESAEIPIF-------DRIFT---RIGDD 96 (235)
T ss_dssp --EEEEESS--SSSSEEEEESSTTSSHHHHHHHHHHHHH--HH-TTT--BSSSEEEEE---------SEEEE---EES--
T ss_pred ecceeecCC--CceeEEEEeCCCccchhhHHHHHHHHhh--hh-hcCceeeecccccccc-------cEEEe---ecccc
Confidence 445556555 5557999999999999999999854321 11 01110 0111111 00000 00000
Q ss_pred hhhhhhhhhHH--HHHHHH-HHHHHH--HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcc
Q 039839 103 SRERGEDDTTF--EKQSAL-FALAIA--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP 177 (825)
Q Consensus 103 ~~er~e~~~~~--ErQRv~-iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~ 177 (825)
.........| |-+++. +....- .++|+||+..|-.++.+ ... ...++..|.++.+..+|++||+.++..
T Consensus 97 -d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg--~ai---~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 97 -DSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEG--IAI---AIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHH--HHH---HHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred -cccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHH--HHH---HHHHHHHHHHhccccEEEEeccchhHH
Confidence 0001112233 222222 222222 78999988887766652 222 333333444324788999999998764
No 449
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.85 E-value=8.3e-05 Score=68.70 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
+..+.|+||+|+||||+++.|++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 5689999999999999999999874
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.84 E-value=1.1e-05 Score=83.19 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=60.6
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcC-CCcccceeeEEcCCCccchhHHHHHHh-hC-CChhhhhhhhhHHHHHHH
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAF-RGRSQTTKGIWIAKCVGIEPFTIAMDL-EG-SDSRERGEDDTTFEKQSA 118 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~-~G~~q~~~G~~~~~~t~~enl~l~ld~-~g-~~~~er~e~~~~~ErQRv 118 (825)
++.|.||+||||||+++.|.+.. .+. .|+. +.+..+ +.+.... .. ....+.+.....+ .-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~----~~~~~~~i-----~t~e~~-----~E~~~~~~~~~i~q~~vg~~~~~~---~~ 65 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI----NKNKTHHI-----LTIEDP-----IEFVHESKRSLINQREVGLDTLSF---EN 65 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----hhcCCcEE-----EEEcCC-----ccccccCccceeeecccCCCccCH---HH
Confidence 78999999999999999988873 222 2221 111110 0000000 00 0000101111111 11
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
++++++. +++++||+. |.+. . ....+.... |..++.++|..+... .++|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~------~----~~~l~~a~~-G~~v~~t~Ha~~~~~--~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLET------I----RLALTAAET-GHLVMSTLHTNSAAK--TIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHH------H----HHHHHHHHc-CCEEEEEecCCcHHH--HHhHHHhh
Confidence 4566665 999999874 3332 2 222234443 889999999997664 67887655
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=97.79 E-value=1.8e-05 Score=98.47 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHH------HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccc
Q 039839 108 EDDTTFEKQSALFA------LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPL 178 (825)
Q Consensus 108 e~~~~~ErQRv~iA------rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l 178 (825)
.....+|+|+++|| ++++ +++|+||||++||+.. +..+.+++..+... +.+||+||||.++..
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~~iiiith~~~~~~- 858 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER------RRKLVDIMERYLRK-IPQVIIVSHDEELKD- 858 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHHH-
Confidence 34567799966655 3444 8999999999999999 99999999988764 789999999997654
Q ss_pred cccCcEEEEeC
Q 039839 179 EYLEPILREDI 189 (825)
Q Consensus 179 ~~~drvlvl~~ 189 (825)
.||++++|..
T Consensus 859 -~~d~~~~l~~ 868 (880)
T PRK03918 859 -AADYVIRVSL 868 (880)
T ss_pred -hCCeEEEEEe
Confidence 7999999973
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.72 E-value=6.3e-05 Score=86.16 Aligned_cols=161 Identities=13% Similarity=0.022 Sum_probs=92.5
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC-Ccc
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK-CVG 88 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~-~t~ 88 (825)
++...++..|... ..+++.+ +.+ .+|+.++|+|++|+|||||+++|+|.. .+..|. +++.-+. ..+
T Consensus 131 ~~r~~i~~~l~TG--iraID~l-l~I--~~Gqri~I~G~sG~GKTtLl~~Ia~~~----~~~~gv----I~~iGerg~ev 197 (432)
T PRK06793 131 FEREEITDVFETG--IKSIDSM-LTI--GIGQKIGIFAGSGVGKSTLLGMIAKNA----KADINV----ISLVGERGREV 197 (432)
T ss_pred hheechhhccCCC--CEEEecc-cee--cCCcEEEEECCCCCChHHHHHHHhccC----CCCeEE----EEeCCCCcccH
Confidence 5556666666432 2345553 777 899999999999999999999999983 333332 1111111 222
Q ss_pred chhHHHHHHhhCCChhh---hhhhhhHHHHHHHHHHHHHH----------HHheecCCCCCCccccccCHHHHHHHHHHH
Q 039839 89 IEPFTIAMDLEGSDSRE---RGEDDTTFEKQSALFALAIA----------DIVLINMWCHDIGREQAANKPLLKTVFQVM 155 (825)
Q Consensus 89 ~enl~l~ld~~g~~~~e---r~e~~~~~ErQRv~iArALa----------~VLLLDEPtsgLD~Epta~~~~~~~V~elL 155 (825)
.+.+...+...|..... ...+....+|+|+..+.+.. -+|++|++|...|. .+++-..+
T Consensus 198 ~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A--------~reisl~~ 269 (432)
T PRK06793 198 KDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA--------RRSVDIAV 269 (432)
T ss_pred HHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH--------HHHHHHHh
Confidence 33333222222221110 01122345888877664443 47788976666654 34665566
Q ss_pred HHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 156 MRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 156 ~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
.+.-.. |.+..+.+| + . ..++|.-....|.|....+
T Consensus 270 ~e~p~~-G~~~~~~s~-l--~--~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 270 KELPIG-GKTLLMESY-M--K--KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred cCCCCC-Ceeeeeecc-c--h--hHHHHhccCCCcceEEEEE
Confidence 665544 778888777 3 2 1344544456788766544
No 453
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.71 E-value=3.1e-05 Score=81.87 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=35.2
Q ss_pred HHheecCCCCCCccccccC-HHHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 039839 126 DIVLINMWCHDIGREQAAN-KPLLKTVFQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~-~~~~~~V~elL~~L~~~~g~TIL~VTHDl 173 (825)
+++|+| |++.+... ..+ +.....+++.+.++.++.|+++|+++|..
T Consensus 113 ~lvviD-pl~~~~~~-~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 113 DLVVID-PLVSFHGV-SENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CEEEEC-ChHHhCCC-CcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 999999 88765211 112 44578889999998877799999999987
No 454
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.69 E-value=0.00015 Score=82.27 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=91.0
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHH-HhcccccCCcCCCccccee-----eEEcC--CCccc--hhHH-HHHHhh-
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHL-FHTNFREMDAFRGRSQTTK-----GIWIA--KCVGI--EPFT-IAMDLE- 99 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L-~Gl~~~~~~~~~G~~q~~~-----G~~~~--~~t~~--enl~-l~ld~~- 99 (825)
.+++ ++| |+.|+|.+--||||||++| .|. .+...|..+..+ .+... ..... .++. |.-.+.
T Consensus 239 GMGI--p~G-vTlIvGGGyHGKSTLL~Ale~GV----YnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~ 311 (448)
T PF09818_consen 239 GMGI--PKG-VTLIVGGGYHGKSTLLEALERGV----YNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPG 311 (448)
T ss_pred EEee--CCc-EEEEECCCCccHHHHHHHHHhcc----cCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCC
Confidence 4567 778 9999999999999999998 566 333333311100 00000 00000 1111 221221
Q ss_pred CCChh-hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCC---------------ccccccCHHHHHHHHHHHHHhhC
Q 039839 100 GSDSR-ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDI---------------GREQAANKPLLKTVFQVMMRLFS 160 (825)
Q Consensus 100 g~~~~-er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgL---------------D~Epta~~~~~~~V~elL~~L~~ 160 (825)
|.+.. -..+++..-.-|-+.|.-||- ++||+||=|++- +.|| ..-+.+.+++|.+
T Consensus 312 g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEP------ITPfidrvr~l~~ 385 (448)
T PF09818_consen 312 GKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEP------ITPFIDRVRSLYE 385 (448)
T ss_pred CCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCC------cchHHHHHHHHHH
Confidence 22221 122344555889999999997 999999655541 4444 5567788888888
Q ss_pred CCCcEEEEEecCCCCccccccCcEEEEeCCe
Q 039839 161 PRKTTLLFVIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 161 ~~g~TIL~VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
++|.+.|+|+--.+.. +..+|+|++|++=+
T Consensus 386 ~~GvStIlV~Ggsgdy-~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 386 KLGVSTILVVGGSGDY-FDVADRVIMMDEYR 415 (448)
T ss_pred HcCceEEEEeccchhh-HhhCCEEEEecCcc
Confidence 7899999999888544 34899999998654
No 455
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.68 E-value=0.00012 Score=90.60 Aligned_cols=64 Identities=3% Similarity=-0.047 Sum_probs=51.8
Q ss_pred HHheecCCCCCC-ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcc--------ccccCcEEEEeCCeEEEec
Q 039839 126 DIVLINMWCHDI-GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP--------LEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 126 ~VLLLDEPtsgL-D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~--------l~~~drvlvl~~GkI~~~g 196 (825)
.++++|||..+| |+.. .+.+.+.++.+.+. |.+++++||+++.+. .+.|++.+++.+|++...+
T Consensus 654 ~illlDE~~~~L~d~~~------~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 654 SLIILDEAWLMLGHPVF------RDKIREWLKVLRKA-NCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred cEEEEECchhhcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence 789999999999 5665 88999999998775 899999999995441 1368989999888875544
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.00011 Score=85.21 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=44.7
Q ss_pred ccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC---CccchhHHHHHHhhCCCh
Q 039839 30 TTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK---CVGIEPFTIAMDLEGSDS 103 (825)
Q Consensus 30 ~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~---~t~~enl~l~ld~~g~~~ 103 (825)
+.+..+ ..|.+++++||||+||||++..|++.. ....|. .+++++... ..+.+++.+..+..|.+.
T Consensus 248 ~~~~~~--~~g~Vi~LvGpnGvGKTTTiaKLA~~~----~~~~G~--~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 248 SEDALL--DRGGVFALMGPTGVGKTTTTAKLAARC----VMRHGA--SKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred Cccccc--cCCcEEEEECCCCccHHHHHHHHHHHH----HHhcCC--CeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 334444 568899999999999999999999973 223332 245655332 344677877777766543
No 457
>PRK01156 chromosome segregation protein; Provisional
Probab=97.61 E-value=4.9e-05 Score=94.98 Aligned_cols=72 Identities=6% Similarity=0.086 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHH------HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCC-C-cEEEEEecCCCCcc
Q 039839 109 DDTTFEKQSALFA------LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-K-TTLLFVIRDKTKTP 177 (825)
Q Consensus 109 ~~~~~ErQRv~iA------rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~-g-~TIL~VTHDl~~a~ 177 (825)
....+|+++++|| ++++ ++++|||||++||++. ...+.+++....... + .++|+||||++...
T Consensus 801 ~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~------~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~ 874 (895)
T PRK01156 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDR------RTNLKDIIEYSLKDSSDIPQVIMISHHRELLS 874 (895)
T ss_pred cCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCCCeEEEEECchHHHH
Confidence 3466799998765 5555 9999999999999999 888999887654332 3 48999999998775
Q ss_pred ccccCcEEEEe
Q 039839 178 LEYLEPILRED 188 (825)
Q Consensus 178 l~~~drvlvl~ 188 (825)
.||+++.+.
T Consensus 875 --~~d~ii~~~ 883 (895)
T PRK01156 875 --VADVAYEVK 883 (895)
T ss_pred --hcCeEEEEE
Confidence 799999887
No 458
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.57 E-value=0.00065 Score=70.98 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=39.7
Q ss_pred HHheecCCCCCCccccccC--HHHHHHHHHHHHHhhCCCCcEEEEEecCC---------CCccccccCcEEEEe
Q 039839 126 DIVLINMWCHDIGREQAAN--KPLLKTVFQVMMRLFSPRKTTLLFVIRDK---------TKTPLEYLEPILRED 188 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~--~~~~~~V~elL~~L~~~~g~TIL~VTHDl---------~~a~l~~~drvlvl~ 188 (825)
+++++| +.+.+ ++..+ ...+..+.++++.+.+. |.|+++++|.- ... ...||.|++++
T Consensus 109 ~~vVID-sls~l--~~~~~~~~~~r~~l~~l~~~lk~~-~~tvll~s~~~~~~~~~~~~~~~-~~l~D~vI~L~ 177 (224)
T TIGR03880 109 SRVVID-PISLL--ETLFDDDAERRTELFRFYSSLRET-GVTTILTSEADKTNVFASKYGLI-EYLADGVIILK 177 (224)
T ss_pred CEEEEc-ChHHH--hhhcCCHHHHHHHHHHHHHHHHhC-CCEEEEEEcccCCCCCccCCCce-EEEEeEEEEEe
Confidence 778899 65555 33322 34567788888888765 99999999963 212 23588888885
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.55 E-value=6.6e-05 Score=95.24 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=60.8
Q ss_pred hhhhHHHHHHHHHHHHHH-----------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCc
Q 039839 108 EDDTTFEKQSALFALAIA-----------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT 176 (825)
Q Consensus 108 e~~~~~ErQRv~iArALa-----------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a 176 (825)
.....+|+++++||+||+ ++||+||||++||++. +..+++.|..+... |+||+||||..++.
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~------~~~~~~~l~~l~~~-g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSET------LDTALDALDALNAS-GKTIGVISHVEAMK 1020 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEecHHHHH
Confidence 445778999999999995 6799999999999999 99999999999875 99999999976655
Q ss_pred cccccCcEEEEe
Q 039839 177 PLEYLEPILRED 188 (825)
Q Consensus 177 ~l~~~drvlvl~ 188 (825)
. .+..+|.|..
T Consensus 1021 ~-~i~~qi~V~k 1031 (1047)
T PRK10246 1021 E-RIPVQIKVKK 1031 (1047)
T ss_pred H-hccceEEEEE
Confidence 3 3455555554
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.49 E-value=7e-05 Score=76.30 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=29.4
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..-+.+.+ ..|+.++|+||||||||||+++|+|+.
T Consensus 15 ~~~l~~~v--~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 15 AAYLWLAV--EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHH--hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33445556 778899999999999999999999984
No 461
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.47 E-value=0.0001 Score=62.30 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.|+++.|.|||||||||||.+|.=+
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999988655
No 462
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.46 E-value=0.00035 Score=74.48 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=29.1
Q ss_pred cccccccccccccCCC-cEEEEECCCCCChhHHHHHHHhc
Q 039839 25 ENFVRTTKLNHCGLSY-AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 25 ~~il~~isl~i~g~~G-eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..++..++..+ ..+ .++.|.||+|+|||||++.+.+.
T Consensus 29 ~~~~~~l~~~~--~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 29 KRAMAYLEYGL--SQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHHH--hcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 34566666665 443 48999999999999999999887
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.44 E-value=8.4e-05 Score=76.87 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=24.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++|.+++|.||||||||||++.|.|+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999999998
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.44 E-value=0.00049 Score=64.37 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+..+.|.||.|+|||||++.+...
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999987
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.42 E-value=0.00067 Score=79.33 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEecCCCCc--------cccccCcEEEEe
Q 039839 146 PLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT--------PLEYLEPILRED 188 (825)
Q Consensus 146 ~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a--------~l~~~drvlvl~ 188 (825)
..++.+++++..+.+. |+|+|+++|+.+.. ....||.|+.++
T Consensus 141 ~~r~~l~~Li~~L~~~-g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 141 VVRREIFRLVARLKQI-GVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 3477888888888765 99999999998431 123578888776
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.42 E-value=9.7e-05 Score=75.13 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
|++++|+||||||||||+++|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 6799999999999999999999974
No 467
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00053 Score=78.54 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=37.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC---CccchhHHHHHHhhCCCh
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK---CVGIEPFTIAMDLEGSDS 103 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~---~t~~enl~l~ld~~g~~~ 103 (825)
..|++++++||||+||||+++.|+|.... ..| ....|++..+ ....+.+....+..|.+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~----~~~--~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVI----RHG--ADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH----hcC--CCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 57899999999999999999999985211 011 1123443222 123455656666666554
No 468
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.41 E-value=0.00011 Score=93.34 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccccc
Q 039839 109 DDTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYL 181 (825)
Q Consensus 109 ~~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~ 181 (825)
....+|+|+++||++++ +++|||||+++||+.. ...|.+++.++.+ +.++|||||++.... .|
T Consensus 1089 ~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~------~~~~~~~~~~~~~--~~~~i~~sh~~~~~~--~~ 1158 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDAN------VERFANLLKEFSK--NTQFIVITHNKGTME--VA 1158 (1179)
T ss_pred ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHH------HHHHHHHHHHhcc--CCEEEEEEcChhHHH--Hh
Confidence 34566999999999983 7999999999999999 9999999999864 478999999998764 79
Q ss_pred CcEEEEe
Q 039839 182 EPILRED 188 (825)
Q Consensus 182 drvlvl~ 188 (825)
|+++.+.
T Consensus 1159 d~~~~~~ 1165 (1179)
T TIGR02168 1159 DQLYGVT 1165 (1179)
T ss_pred hhHeeee
Confidence 9987554
No 469
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.39 E-value=0.00012 Score=74.26 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.|++++|+|+||||||||+++|+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999999983
No 470
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.38 E-value=0.0014 Score=68.45 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.3
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHHH
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHLF 61 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L~ 61 (825)
.-++ ++|+++.|.||+|||||||...++
T Consensus 14 ~GGi--~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 14 EGGI--PRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred cCCC--cCCeEEEEECCCCCChHHHHHHHH
Confidence 3467 889999999999999999988654
No 471
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.36 E-value=0.00079 Score=78.12 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=74.5
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhh-hhhh
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERG-EDDT 111 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~-e~~~ 111 (825)
=++ .+|+++.|.|++|+|||||+..++... .. .|. +.-|+-...+ .+.+..-+.-.|.+..... -...
T Consensus 89 GGi--~~GsvilI~G~pGsGKTTL~lq~a~~~----a~-~g~---kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e~ 157 (454)
T TIGR00416 89 GGI--VPGSLILIGGDPGIGKSTLLLQVACQL----AK-NQM---KVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSET 157 (454)
T ss_pred CCc--cCCeEEEEEcCCCCCHHHHHHHHHHHH----Hh-cCC---cEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCCC
Confidence 367 889999999999999999999887652 11 121 1223211111 1122211122222211000 0000
Q ss_pred HHHHHHHHHHHHHH-HHheecCCCCCCcc-ccc--cC-HHHHHHHHHHHHHhhCCCCcEEEEEecCCCC--------ccc
Q 039839 112 TFEKQSALFALAIA-DIVLINMWCHDIGR-EQA--AN-KPLLKTVFQVMMRLFSPRKTTLLFVIRDKTK--------TPL 178 (825)
Q Consensus 112 ~~ErQRv~iArALa-~VLLLDEPtsgLD~-Ept--a~-~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~--------a~l 178 (825)
.++.-. ..+...- +++++|--.+ +-. +.. .+ ..-.+.+...|.++.++.|+|+|+++|.... . .
T Consensus 158 ~~~~I~-~~i~~~~~~~vVIDSIq~-l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~l-e 234 (454)
T TIGR00416 158 NWEQIC-ANIEEENPQACVIDSIQT-LYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVL-E 234 (454)
T ss_pred CHHHHH-HHHHhcCCcEEEEecchh-hcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccE-e
Confidence 111100 0111111 8899994332 321 111 11 2334566666777777789999999997632 2 2
Q ss_pred cccCcEEEEeCCe
Q 039839 179 EYLEPILREDIQK 191 (825)
Q Consensus 179 ~~~drvlvl~~Gk 191 (825)
..+|.|+.++.++
T Consensus 235 ~lvD~VI~Le~~~ 247 (454)
T TIGR00416 235 HMVDTVLYFEGDR 247 (454)
T ss_pred eeceEEEEEeccC
Confidence 3589999887543
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.35 E-value=0.00064 Score=75.36 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..|++++|+||||+||||++..|++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999999999999983
No 473
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.00019 Score=85.99 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE-
Q 039839 114 EKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE- 187 (825)
Q Consensus 114 ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl- 187 (825)
|.||+-+|.-+- =+.+||||.-||=+.- -..+++.|+.|... |-|+|+|.||.+... .||+++-+
T Consensus 486 EaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrD------n~rLi~tL~~LRDl-GNTviVVEHDedti~--~AD~iIDiG 556 (935)
T COG0178 486 EAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NERLIETLKRLRDL-GNTVIVVEHDEDTIR--AADHIIDIG 556 (935)
T ss_pred HHHHHHHHHHhcccceeeEEEecCCccCCChhh------HHHHHHHHHHHHhc-CCeEEEEecCHHHHh--hcCEEEeeC
Confidence 999999998886 5679999999997777 88899999999876 999999999998875 79999887
Q ss_pred -----eCCeEEEecCcccccCCc
Q 039839 188 -----DIQKIWDAVPKPQTLKNT 205 (825)
Q Consensus 188 -----~~GkI~~~g~~~e~l~~~ 205 (825)
+.|.|++.|++++++.+.
T Consensus 557 PgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 557 PGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CCCCcCCCEEEEccCHHHHHhCC
Confidence 458999999999988755
No 474
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.00013 Score=94.67 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=53.4
Q ss_pred hhhHHHHH------HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhC----CCCcEEEEEecCCCC
Q 039839 109 DDTTFEKQ------SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS----PRKTTLLFVIRDKTK 175 (825)
Q Consensus 109 ~~~~~ErQ------Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~----~~g~TIL~VTHDl~~ 175 (825)
....+|+| |++||++++ ++|||||||++||+.. ...+.+.+..+.. ..|.+||+||||+++
T Consensus 1199 ~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~------~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~ 1272 (1311)
T TIGR00606 1199 RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDREN------IESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272 (1311)
T ss_pred CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhhhhccCCeEEEEecCHHH
Confidence 45677999 999999999 9999999999999999 8888888877742 237899999999976
Q ss_pred c
Q 039839 176 T 176 (825)
Q Consensus 176 a 176 (825)
+
T Consensus 1273 ~ 1273 (1311)
T TIGR00606 1273 V 1273 (1311)
T ss_pred H
Confidence 5
No 475
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.28 E-value=0.00046 Score=85.54 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=67.7
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhCCC
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEGSD 102 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g~~ 102 (825)
+-.++.++ ....++.|.|||.+||||+||.++=... |. ..|.. ...+|++ +.+.. + .|..
T Consensus 582 VpNdi~l~---~~~~~~iITGPNmgGKSt~lrqvali~i--mA-q~G~~VPA~~a~i~~~-------D~Ift--r-ig~~ 645 (840)
T TIGR01070 582 VPNDLEMA---HNRRMLLITGPNMGGKSTYMRQTALIAL--LA-QIGSFVPAESAELPLF-------DRIFT--R-IGAS 645 (840)
T ss_pred EeeeeecC---CCccEEEEECCCCCCchHHHHHHHHHHH--HH-hcCCCccchheEeccc-------cEEEE--e-cCcc
Confidence 33444544 3456899999999999999998743211 11 11210 1122221 11100 0 0111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcc
Q 039839 103 SRERGEDDTTFEKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP 177 (825)
Q Consensus 103 ~~er~e~~~~~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~ 177 (825)
.........|+-....+|..|- .++|+||+..|-++.. |......|.+.+.+ ..|..+||+||.+++..
T Consensus 646 -d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~d--g~aia~ai~e~l~~---~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 646 -DDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYD--GLALAWAIAEYLHE---HIRAKTLFATHYFELTA 719 (840)
T ss_pred -cchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhH--HHHHHHHHHHHHHh---cCCCEEEEEcCchHHHH
Confidence 0111112445333334444443 8999999877776555 23333444444443 24789999999997654
No 476
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.24 E-value=0.00038 Score=80.03 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=43.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..++..++++.|... ..+++.+. .+ .+|++++|+|||||||||||++|+|+.
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I--~~Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PL--CAGQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-ee--cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999643 34566664 67 889999999999999999999999984
No 477
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.21 E-value=0.0016 Score=66.26 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=70.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcc-cccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHH
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN-FREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALF 120 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~-~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~i 120 (825)
+++|.|.-||||||+.+.+.-.- .+.++.+.-.. .++-+...+... ..+..|.. .. ....+-+|..|
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~----~~~~~~~~~~~~---i~~~fg~~---i~--~~~g~idr~~L 68 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAH----QVVEKGSPAYEK---IVDHFGAQ---IL--NEDGELDRKAL 68 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHH----HHHhcCChHHHH---HHHHHCHH---Hh--CCCCCCCHHHH
Confidence 48999999999999999987541 11111110000 000000011111 11122200 00 01224567778
Q ss_pred HHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcc-ccccCcEEEEeC
Q 039839 121 ALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP-LEYLEPILREDI 189 (825)
Q Consensus 121 ArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~-l~~~drvlvl~~ 189 (825)
|..+. +.+..+| ..++|.- .+.+.+.+.++..+ |.++++.+|.+.... ...||.+++++.
T Consensus 69 ~~~vf~~~~~~~~le--~ilhP~i------~~~i~~~i~~~~~~-~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 69 GERVFNDPEELKWLN--NLLHPLI------REWMKKLLAQFQSK-LAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred HHHHhCCHHHHHHHH--HhhCHHH------HHHHHHHHHHhhcC-CCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 87776 4444442 4445444 99999999888654 679999999994321 246898887764
No 478
>PRK02224 chromosome segregation protein; Provisional
Probab=97.19 E-value=0.00045 Score=86.26 Aligned_cols=72 Identities=7% Similarity=0.049 Sum_probs=59.1
Q ss_pred hhhHHHHH------HHHHHHHHH---------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCC-cEEEEEecC
Q 039839 109 DDTTFEKQ------SALFALAIA---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK-TTLLFVIRD 172 (825)
Q Consensus 109 ~~~~~ErQ------Rv~iArALa---------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g-~TIL~VTHD 172 (825)
....+|++ |+++|++++ .++|+|||+++||+.. ...+.++|..+... | .+||+||||
T Consensus 781 ~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~------~~~~~~~l~~~~~~-~~~qviiish~ 853 (880)
T PRK02224 781 QLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGH------VSQLVDLVESMRRL-GVEQIVVVSHD 853 (880)
T ss_pred hcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHH------HHHHHHHHHHHHhc-CCCeEEEEECC
Confidence 34556888 777777766 3699999999999999 99999999998754 5 489999999
Q ss_pred CCCccccccCcEEEEeC
Q 039839 173 KTKTPLEYLEPILREDI 189 (825)
Q Consensus 173 l~~a~l~~~drvlvl~~ 189 (825)
..... .||+++.+..
T Consensus 854 ~~~~~--~ad~~~~~~~ 868 (880)
T PRK02224 854 DELVG--AADDLVRVEK 868 (880)
T ss_pred hHHHH--hcCeeEEeec
Confidence 98775 6999999864
No 479
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.00089 Score=75.63 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=43.2
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC---CccchhHHHHHHhhCCCh
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK---CVGIEPFTIAMDLEGSDS 103 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~---~t~~enl~l~ld~~g~~~ 103 (825)
+...+..+ ..|.+++++||||+||||++..|++... ...|. ..++++-.. ....+.+....+..|.+-
T Consensus 127 ~~~~~~~~--~~g~ii~lvGptGvGKTTtiakLA~~~~----~~~G~--~~V~lit~D~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 127 LDSEDALM--ERGGVFALMGPTGVGKTTTTAKLAARCV----MRFGA--SKVALLTTDSYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred hcCCCccc--cCCcEEEEECCCCCCHHHHHHHHHHHHH----HhcCC--CeEEEEecccccccHHHHHHHHHHHcCCce
Confidence 44455556 7899999999999999999999998621 11121 234554222 223566666666666543
No 480
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.16 E-value=0.0003 Score=72.12 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=25.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+|++++|+||+|||||||++.|.+..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999999974
No 481
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.00094 Score=81.19 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=42.7
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC---CccchhHHHHHHhhCCCh
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK---CVGIEPFTIAMDLEGSDS 103 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~---~t~~enl~l~ld~~g~~~ 103 (825)
+.+.++.+ ..|++++++||||+||||++..|++.. ....|. ..++++-.. ....+.+....+..|.+-
T Consensus 175 l~~~~~~~--~~g~Vi~lVGpnGvGKTTTiaKLA~~~----~~~~G~--kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 175 LRDEDALL--AQGGVLALVGPTGVGKTTTTAKLAARC----VAREGA--DQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred ccCCCccc--CCCeEEEEECCCCCcHHHHHHHHHhhH----HHHcCC--CeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 34455555 568899999999999999999999973 223332 234444222 123456666666666543
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.13 E-value=0.00032 Score=70.41 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
|.+++|+||||||||||++.|.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6799999999999999999999963
No 483
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.13 E-value=0.00033 Score=73.69 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR 74 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~ 74 (825)
.+..++||.||||||||||++.|.|+ +.+..|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~----l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL----LQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----hhhccCC
Confidence 45569999999999999999999999 4555444
No 484
>PRK00064 recF recombination protein F; Reviewed
Probab=97.12 E-value=0.00062 Score=76.71 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHH------------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc-
Q 039839 114 EKQSALFALAIA------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY- 180 (825)
Q Consensus 114 ErQRv~iArALa------------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~- 180 (825)
|+|++.+|++++ +|||||||+++||+.. +..+++.+.++ +..+++++|+.+..+ ..
T Consensus 278 q~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~------~~~l~~~l~~~----~~qv~it~~~~~~~~-~~~ 346 (361)
T PRK00064 278 QQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGR------RAALLERLKGL----GAQVFITTTDLEDLA-DLL 346 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHH------HHHHHHHHhcc----CCEEEEEcCChhhhh-hhh
Confidence 999999999884 8999999999999998 88998888764 357899999985543 23
Q ss_pred -cCcEEEEeCCeE
Q 039839 181 -LEPILREDIQKI 192 (825)
Q Consensus 181 -~drvlvl~~GkI 192 (825)
.++++.+++|+|
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 347888999987
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.08 E-value=0.00039 Score=69.89 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|++++|+||||||||||++.|++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999997
No 486
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.06 E-value=0.0028 Score=67.92 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=28.0
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.|+.+.-++ ..|+++.|.|++|+|||||+..++..
T Consensus 19 ~Ld~~~gG~--~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 19 VLNKLTKGL--RKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred eeeeeeEEE--cCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444578 88999999999999999999877543
No 487
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.03 E-value=0.00077 Score=75.45 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=62.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhh-C-CChhhhhhhhhHHHH
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLE-G-SDSRERGEDDTTFEK 115 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~-g-~~~~er~e~~~~~Er 115 (825)
.++.++.|.||+||||||+|+.|.+... .+..++. +.+.. .+.+..... . ....+.+.....+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~---~~~~~~i-----~tiEd-----p~E~~~~~~~~~i~q~evg~~~~~~-- 184 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYIN---KNAAGHI-----ITIED-----PIEYVHRNKRSLINQREVGLDTLSF-- 184 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhC---cCCCCEE-----EEEcC-----ChhhhccCccceEEccccCCCCcCH--
Confidence 4577999999999999999999988621 1122221 11111 111110000 0 0000111110111
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
.-+++.+|- |++++||+. |.+. ....++ ... .|.+++.++|-.+... ..+|++-+
T Consensus 185 -~~~l~~~lr~~pd~i~vgEir---d~~~------~~~~l~----aa~-tGh~v~~T~Ha~~~~~--~~~Rl~~~ 242 (343)
T TIGR01420 185 -ANALRAALREDPDVILIGEMR---DLET------VELALT----AAE-TGHLVFGTLHTNSAAQ--TIERIIDV 242 (343)
T ss_pred -HHHHHHhhccCCCEEEEeCCC---CHHH------HHHHHH----HHH-cCCcEEEEEcCCCHHH--HHHHHHHh
Confidence 113455554 999999885 5554 333333 233 3889999999886654 45666443
No 488
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.00 E-value=0.00056 Score=67.46 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=25.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCC
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG 73 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G 73 (825)
.++|+|++|||||||++.|.|..+....++.|
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 58999999999999999999975543444444
No 489
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.00 E-value=0.00066 Score=86.70 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccccc
Q 039839 109 DDTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYL 181 (825)
Q Consensus 109 ~~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~ 181 (825)
....+|+++++||++++ +++|||||+++||+.. ...+.++|.++.. ++.+|+|||+..... .|
T Consensus 1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~------~~~~~~~l~~~~~--~~~~i~~t~~~~~~~--~~ 1143 (1164)
T TIGR02169 1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVN------VERVAKLIREKAG--EAQFIVVSLRSPMIE--YA 1143 (1164)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHH------HHHHHHHHHHhcC--CCeEEEEECcHHHHH--hc
Confidence 34566999999999997 8999999999999999 9999999999864 578999999987554 89
Q ss_pred CcEEEEeC
Q 039839 182 EPILREDI 189 (825)
Q Consensus 182 drvlvl~~ 189 (825)
|+++.+..
T Consensus 1144 d~~~~~~~ 1151 (1164)
T TIGR02169 1144 DRAIGVTM 1151 (1164)
T ss_pred ceeEeEEE
Confidence 99987753
No 490
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.98 E-value=0.0014 Score=84.21 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=26.7
Q ss_pred cccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 31 TKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 31 isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++.. ..+.++||+|++|+|||||++++++.
T Consensus 200 L~l~~--~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 200 LHLES--EEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred Hcccc--CceEEEEEEcCCCCchHHHHHHHHHH
Confidence 34555 67889999999999999999999775
No 491
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.97 E-value=0.00068 Score=79.35 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=45.1
Q ss_pred EEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc
Q 039839 12 LIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR 74 (825)
Q Consensus 12 l~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~ 74 (825)
+.|++..|+. ..+.+.+++.. ..|+.++|+||||||||||+++|.|+ +++.+|.
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa--~~G~~llliG~~GsGKTtLak~L~gl----lpp~~g~ 240 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITA--AGGHNLLLIGPPGTGKTMLASRINGL----LPDLSNE 240 (506)
T ss_pred ccCeEEEECc---HHHHhhhheec--cCCcEEEEECCCCCcHHHHHHHHhcc----CCCCCCc
Confidence 3477777766 45778888998 88999999999999999999999999 5566555
No 492
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.96 E-value=0.002 Score=71.71 Aligned_cols=24 Identities=50% Similarity=0.652 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.++|+|++|+|||||++.|.+.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~ 185 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAV 185 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 779999999999999999999987
No 493
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.95 E-value=0.00099 Score=75.55 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=44.1
Q ss_pred eEEEEEeEEEecCcccccccc-----------ccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 9 CMQLIDGNGEFNVDGLENFVR-----------TTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~-----------~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.++|++..|... +.+|. ++.+.+ ..|+.++|+||.|||||||++.|...
T Consensus 130 ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pi--g~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 130 RVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPI--GKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CeEEEEeeecCCCc--cceeecCccccceeeeeeEEEe--CCCCEEEEECCCCCChhHHHHHHHHh
Confidence 58999999999653 34554 788888 99999999999999999999999886
No 494
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.95 E-value=0.0034 Score=71.13 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=72.9
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhh-hhhhH
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERG-EDDTT 112 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~-e~~~~ 112 (825)
++ .+|+++.|.|++|+|||||+..+++.. ... |. .+-|+-.. ...+.+..-+.-.|.+..... -....
T Consensus 78 Gi--~~GslvLI~G~pG~GKStLllq~a~~~----a~~-g~---~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l~l~~e~~ 146 (372)
T cd01121 78 GL--VPGSVILIGGDPGIGKSTLLLQVAARL----AKR-GG---KVLYVSGE-ESPEQIKLRADRLGISTENLYLLAETN 146 (372)
T ss_pred Cc--cCCeEEEEEeCCCCCHHHHHHHHHHHH----Hhc-CC---eEEEEECC-cCHHHHHHHHHHcCCCcccEEEEccCc
Confidence 57 789999999999999999999888752 111 21 12222111 111222222222222111100 00001
Q ss_pred HHHHHHHHHHHHH-HHheecCCCCCCcccc--ccC-HHHHHHHHHHHHHhhCCCCcEEEEEecCCCC-------cccccc
Q 039839 113 FEKQSALFALAIA-DIVLINMWCHDIGREQ--AAN-KPLLKTVFQVMMRLFSPRKTTLLFVIRDKTK-------TPLEYL 181 (825)
Q Consensus 113 ~ErQRv~iArALa-~VLLLDEPtsgLD~Ep--ta~-~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~-------a~l~~~ 181 (825)
++.-.-.+ ...- +++++|...+=...+. ..+ ..-.+.+...|.++.++.++|+|++.|--.. .....+
T Consensus 147 le~I~~~i-~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~v 225 (372)
T cd01121 147 LEDILASI-EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMV 225 (372)
T ss_pred HHHHHHHH-HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhc
Confidence 11111111 1112 8999996532111111 112 3335566677777777779999999884421 111347
Q ss_pred CcEEEEeCC
Q 039839 182 EPILREDIQ 190 (825)
Q Consensus 182 drvlvl~~G 190 (825)
|.++.++.+
T Consensus 226 D~Vi~le~~ 234 (372)
T cd01121 226 DTVLYFEGD 234 (372)
T ss_pred eEEEEEEcC
Confidence 878777643
No 495
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.95 E-value=0.002 Score=80.31 Aligned_cols=44 Identities=5% Similarity=0.045 Sum_probs=37.6
Q ss_pred HHheecCCCCCC-ccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCc
Q 039839 126 DIVLINMWCHDI-GREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT 176 (825)
Q Consensus 126 ~VLLLDEPtsgL-D~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a 176 (825)
.++++|||..+| |+.. .+.+.+.++.+.+. |.+++++||+++.+
T Consensus 689 ~illlDE~w~~L~d~~~------~~~i~~~lk~~RK~-g~~vil~TQs~~d~ 733 (852)
T PRK13891 689 AVIILDEAWLMLGHPAF------RAKIREWLKVLRKA-NCLVLMATQSLSDA 733 (852)
T ss_pred CEEEEeCchhhcCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 899999999999 4555 88888999888765 89999999999554
No 496
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.92 E-value=0.00048 Score=72.40 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
++||.||||||||||++.|.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999983
No 497
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=96.92 E-value=0.0042 Score=69.73 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=85.4
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc-----------ceeeEEcCCCccchhHHHHHHhhC
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ-----------TTKGIWIAKCVGIEPFTIAMDLEG 100 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q-----------~~~G~~~~~~t~~enl~l~ld~~g 100 (825)
.+++ +.| ++.|.|+|--|||||+++|..=... .-|-.||.. .--|.++.. .+--.|+-.+.|
T Consensus 237 gmgI--p~g-it~ItG~nfhGKTTLl~Aie~gvdn-HipGDGRE~vVTd~~lakaeae~gr~vsg---~D~SlFi~~LPg 309 (554)
T COG3044 237 GMGI--PQG-ITLITGGNFHGKTTLLTAIERGVDN-HIPGDGRERVVTDVKLAKAEAEEGRCVSG---LDLSLFINHLPG 309 (554)
T ss_pred ccCC--Ccc-eEEEecCCccchhHHHHHHHhcccc-cCCCCCceEEEehhhhhhhhcccceeeec---cchHHHHHhCCC
Confidence 5667 778 9999999999999999999532211 112234410 111333332 122222223332
Q ss_pred CC-hhh-hhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCcccc-------ccCHHHHHHHHHHHHHhhCCCCcEEEE
Q 039839 101 SD-SRE-RGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQ-------AANKPLLKTVFQVMMRLFSPRKTTLLF 168 (825)
Q Consensus 101 ~~-~~e-r~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Ep-------ta~~~~~~~V~elL~~L~~~~g~TIL~ 168 (825)
.. ..+ ...++..-+.+.+.|=+++= ++|++||=+++...-. ..|......+.+.+.++... +.++|.
T Consensus 310 gkdTp~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd-~iS~ia 388 (554)
T COG3044 310 GKDTPDFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGD-LISTIA 388 (554)
T ss_pred CCCCcccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccC-ceEEEE
Confidence 21 111 12233455888888888886 9999996554432211 00112233344444554433 589999
Q ss_pred EecCCCCccccccCcEEEEeCCe
Q 039839 169 VIRDKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 169 VTHDl~~a~l~~~drvlvl~~Gk 191 (825)
||--++.. +..+||+++|++-+
T Consensus 389 Vtgglddl-la~aDRaIvMeDhr 410 (554)
T COG3044 389 VTGGLDDL-LAVADRAIVMEDHR 410 (554)
T ss_pred Eeccchhh-hhhcceEEEecccC
Confidence 99988544 24899999998655
No 498
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.91 E-value=0.00053 Score=70.16 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++||.||+|||||||.++|.++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998
No 499
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.89 E-value=0.0029 Score=66.18 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=25.1
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++ ..|+++.|.||+|||||||+..++..
T Consensus 15 Gi--~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GI--ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CC--CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 67 88999999999999999999988743
No 500
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.85 E-value=0.0007 Score=74.09 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=22.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhcc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
-++||.||||||||||+++|.++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999983
Done!