Query 039839
Match_columns 825
No_of_seqs 628 out of 1977
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 8.8E-34 3E-38 303.2 13.0 193 1-211 1-241 (275)
2 3tui_C Methionine import ATP-b 100.0 1.1E-32 3.8E-37 304.7 12.9 185 7-204 22-254 (366)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-32 4.8E-37 303.5 11.3 180 9-204 4-229 (359)
4 3rlf_A Maltose/maltodextrin im 100.0 2.9E-32 1E-36 302.9 12.5 179 9-203 3-223 (381)
5 1g6h_A High-affinity branched- 100.0 6.6E-32 2.3E-36 285.6 14.4 178 6-200 4-239 (257)
6 4g1u_C Hemin import ATP-bindin 100.0 8.1E-32 2.8E-36 286.6 12.5 193 8-216 10-250 (266)
7 2pcj_A ABC transporter, lipopr 100.0 2.1E-31 7.2E-36 276.3 13.8 172 8-197 3-222 (224)
8 2olj_A Amino acid ABC transpor 100.0 1.4E-31 4.9E-36 284.3 12.8 179 8-203 23-248 (263)
9 3tif_A Uncharacterized ABC tra 100.0 1.7E-31 5.8E-36 279.0 12.6 179 9-201 1-232 (235)
10 1vpl_A ABC transporter, ATP-bi 100.0 4.2E-31 1.4E-35 279.6 13.5 177 9-202 15-234 (256)
11 1z47_A CYSA, putative ABC-tran 100.0 2.5E-31 8.6E-36 293.3 12.1 182 7-204 12-236 (355)
12 1v43_A Sugar-binding transport 100.0 1.8E-31 6.2E-36 296.3 10.6 180 9-204 11-232 (372)
13 2nq2_C Hypothetical ABC transp 100.0 4.6E-31 1.6E-35 278.8 12.6 190 8-214 3-228 (253)
14 1b0u_A Histidine permease; ABC 100.0 3.7E-31 1.3E-35 280.8 11.8 179 8-203 5-242 (262)
15 2it1_A 362AA long hypothetical 100.0 3.7E-31 1.3E-35 292.8 12.2 180 9-204 3-224 (362)
16 2yyz_A Sugar ABC transporter, 100.0 3.1E-31 1.1E-35 293.2 10.8 180 9-204 3-224 (359)
17 1g29_1 MALK, maltose transport 100.0 9.4E-31 3.2E-35 290.7 12.5 180 9-204 3-230 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 8.6E-31 2.9E-35 274.4 11.2 178 8-203 5-228 (240)
19 1oxx_K GLCV, glucose, ABC tran 100.0 7.1E-31 2.4E-35 289.9 10.6 180 9-204 3-231 (353)
20 3d31_A Sulfate/molybdate ABC t 100.0 1E-30 3.5E-35 288.0 10.5 179 9-204 1-218 (348)
21 2ihy_A ABC transporter, ATP-bi 100.0 9.1E-31 3.1E-35 280.4 9.8 190 7-213 19-262 (279)
22 2yz2_A Putative ABC transporte 100.0 2E-29 6.9E-34 267.9 15.0 181 9-203 2-227 (266)
23 2onk_A Molybdate/tungstate ABC 100.0 4.7E-30 1.6E-34 269.2 7.8 176 9-203 1-216 (240)
24 2ixe_A Antigen peptide transpo 100.0 2E-29 6.8E-34 268.9 10.8 181 8-202 15-244 (271)
25 2zu0_C Probable ATP-dependent 100.0 8.9E-29 3E-33 263.2 15.2 180 7-201 18-252 (267)
26 2ff7_A Alpha-hemolysin translo 100.0 5.4E-29 1.8E-33 262.0 13.2 177 9-203 7-232 (247)
27 1mv5_A LMRA, multidrug resista 100.0 3.7E-29 1.3E-33 262.4 8.9 176 9-202 1-225 (243)
28 2qi9_C Vitamin B12 import ATP- 100.0 4.9E-29 1.7E-33 262.8 9.3 184 8-214 3-233 (249)
29 2cbz_A Multidrug resistance-as 100.0 9.3E-29 3.2E-33 258.6 11.0 177 9-202 3-216 (237)
30 2d2e_A SUFC protein; ABC-ATPas 100.0 3.7E-28 1.2E-32 256.0 14.7 176 9-199 3-229 (250)
31 3nh6_A ATP-binding cassette SU 100.0 6.8E-29 2.3E-33 269.1 8.8 177 9-203 53-277 (306)
32 2pze_A Cystic fibrosis transme 100.0 1.3E-28 4.3E-33 256.3 10.4 179 8-203 5-218 (229)
33 2ghi_A Transport protein; mult 99.9 3.5E-28 1.2E-32 257.7 13.4 178 8-202 16-241 (260)
34 2pjz_A Hypothetical protein ST 99.9 1.1E-27 3.8E-32 254.4 13.1 176 9-203 1-215 (263)
35 1sgw_A Putative ABC transporte 99.9 1.8E-27 6.1E-32 245.6 9.3 166 8-192 9-210 (214)
36 3gd7_A Fusion complex of cysti 99.9 3.4E-27 1.2E-31 263.5 10.6 179 8-204 18-243 (390)
37 3b5x_A Lipid A export ATP-bind 99.9 5.3E-26 1.8E-30 266.2 13.9 177 9-203 341-567 (582)
38 2yl4_A ATP-binding cassette SU 99.9 5.6E-26 1.9E-30 266.7 13.2 178 10-203 342-570 (595)
39 4a82_A Cystic fibrosis transme 99.9 4.7E-26 1.6E-30 266.6 11.8 179 9-204 339-565 (578)
40 3qf4_B Uncharacterized ABC tra 99.9 3.7E-26 1.3E-30 268.4 10.5 178 9-204 354-579 (598)
41 3b60_A Lipid A export ATP-bind 99.9 7.2E-26 2.5E-30 265.1 12.8 177 9-203 341-567 (582)
42 2bbs_A Cystic fibrosis transme 99.9 4.3E-26 1.5E-30 245.5 7.5 173 8-202 39-246 (290)
43 3qf4_A ABC transporter, ATP-bi 99.9 5.1E-26 1.7E-30 266.8 7.9 178 9-203 341-566 (587)
44 4f4c_A Multidrug resistance pr 99.9 6.2E-25 2.1E-29 278.2 11.2 181 9-205 1076-1306(1321)
45 3g5u_A MCG1178, multidrug resi 99.9 3.2E-24 1.1E-28 271.1 13.1 180 9-204 1030-1259(1284)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 2.6E-24 8.8E-29 249.8 10.3 179 8-203 286-493 (538)
47 3bk7_A ABC transporter ATP-bin 99.9 3.6E-24 1.2E-28 251.7 11.4 179 8-203 356-563 (607)
48 3ozx_A RNAse L inhibitor; ATP 99.9 6.6E-24 2.3E-28 246.2 10.8 176 8-200 268-474 (538)
49 4f4c_A Multidrug resistance pr 99.9 1.8E-23 6E-28 265.0 14.3 180 9-204 415-642 (1321)
50 3g5u_A MCG1178, multidrug resi 99.9 1.1E-23 3.7E-28 266.3 8.9 180 9-204 387-614 (1284)
51 3j16_B RLI1P; ribosome recycli 99.9 1E-23 3.5E-28 247.6 7.8 175 13-204 350-560 (608)
52 3ux8_A Excinuclease ABC, A sub 99.9 1.6E-23 5.5E-28 249.0 7.6 169 25-204 31-299 (670)
53 3bk7_A ABC transporter ATP-bin 99.9 1.4E-22 4.8E-27 238.1 12.4 165 9-190 83-304 (607)
54 1yqt_A RNAse L inhibitor; ATP- 99.9 1.6E-22 5.6E-27 234.7 11.7 164 10-190 21-234 (538)
55 2iw3_A Elongation factor 3A; a 99.9 8E-22 2.7E-26 240.4 13.2 175 9-202 435-634 (986)
56 2iw3_A Elongation factor 3A; a 99.9 2E-22 6.7E-27 245.7 7.1 77 110-197 902-981 (986)
57 3j16_B RLI1P; ribosome recycli 99.8 6.4E-21 2.2E-25 223.9 12.6 165 9-191 69-298 (608)
58 3ux8_A Excinuclease ABC, A sub 99.8 2.9E-21 9.7E-26 229.7 8.0 85 109-202 543-639 (670)
59 3ozx_A RNAse L inhibitor; ATP 99.8 4.2E-20 1.5E-24 214.4 12.0 159 14-190 4-213 (538)
60 2npi_A Protein CLP1; CLP1-PCF1 99.8 7.3E-21 2.5E-25 216.8 -3.9 164 9-201 118-336 (460)
61 3q5d_A Atlastin-1; G protein, 99.8 1.1E-18 3.8E-23 197.7 13.2 309 38-369 65-432 (447)
62 3pih_A Uvrabc system protein A 99.7 1.1E-18 3.9E-23 212.3 8.8 86 110-204 806-903 (916)
63 2vf7_A UVRA2, excinuclease ABC 99.7 1.3E-18 4.6E-23 210.1 8.2 85 111-204 732-828 (842)
64 2r6f_A Excinuclease ABC subuni 99.7 1.5E-18 5.3E-23 210.3 7.9 85 110-203 846-942 (972)
65 4gp7_A Metallophosphoesterase; 99.7 2.7E-19 9.2E-24 177.0 -0.0 139 30-177 1-163 (171)
66 2ygr_A Uvrabc system protein A 99.7 2.5E-18 8.6E-23 209.1 7.9 85 110-203 864-960 (993)
67 4aby_A DNA repair protein RECN 99.7 1.7E-17 5.8E-22 185.2 11.8 77 110-196 296-381 (415)
68 3b85_A Phosphate starvation-in 99.7 1.5E-19 5.2E-24 185.5 -4.5 142 25-193 13-173 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 9.6E-17 3.3E-21 177.8 10.5 76 110-194 280-364 (365)
70 1ye8_A Protein THEP1, hypothet 99.6 2.4E-16 8.2E-21 157.7 2.7 132 42-194 2-159 (178)
71 1znw_A Guanylate kinase, GMP k 99.6 4.9E-17 1.7E-21 165.2 -4.9 156 25-188 9-202 (207)
72 2o8b_B DNA mismatch repair pro 99.6 7.9E-16 2.7E-20 190.0 4.1 162 8-193 749-930 (1022)
73 2ehv_A Hypothetical protein PH 99.5 4.3E-15 1.5E-19 152.9 8.2 61 126-188 137-206 (251)
74 3thx_A DNA mismatch repair pro 99.5 2.5E-15 8.5E-20 183.7 7.4 153 25-201 649-811 (934)
75 1tq4_A IIGP1, interferon-induc 99.5 2.2E-15 7.5E-20 169.4 2.3 146 26-184 37-247 (413)
76 2dpy_A FLII, flagellum-specifi 99.5 1.8E-15 6.1E-20 171.5 -0.7 169 8-203 130-344 (438)
77 1e69_A Chromosome segregation 99.5 2.2E-13 7.6E-18 147.9 14.8 73 110-192 220-301 (322)
78 1tf7_A KAIC; homohexamer, hexa 99.5 3.4E-14 1.2E-18 164.3 8.8 169 7-191 10-211 (525)
79 4a74_A DNA repair and recombin 99.5 1.3E-14 4.6E-19 147.4 4.8 152 34-190 21-200 (231)
80 3szr_A Interferon-induced GTP- 99.5 4E-14 1.4E-18 166.6 8.1 168 8-198 9-232 (608)
81 2obl_A ESCN; ATPase, hydrolase 99.5 5.8E-15 2E-19 162.6 0.4 168 8-201 44-253 (347)
82 1f5n_A Interferon-induced guan 99.4 7.5E-11 2.6E-15 137.9 32.0 350 41-418 39-451 (592)
83 2pt7_A CAG-ALFA; ATPase, prote 99.4 7.5E-15 2.5E-19 160.6 -2.2 128 27-191 160-291 (330)
84 1cr0_A DNA primase/helicase; R 99.4 9E-14 3.1E-18 148.4 5.2 156 26-192 23-237 (296)
85 2w0m_A SSO2452; RECA, SSPF, un 99.4 3.7E-13 1.3E-17 136.4 9.5 147 26-190 10-192 (235)
86 3thx_B DNA mismatch repair pro 99.4 9.3E-14 3.2E-18 169.5 5.9 135 25-183 660-804 (918)
87 1tf7_A KAIC; homohexamer, hexa 99.4 3.3E-13 1.1E-17 156.1 9.7 145 32-191 275-444 (525)
88 3b9q_A Chloroplast SRP recepto 99.4 8.9E-14 3E-18 150.3 4.6 144 29-192 91-284 (302)
89 1z6g_A Guanylate kinase; struc 99.4 2.6E-15 8.8E-20 154.3 -9.0 140 26-176 11-197 (218)
90 3qkt_A DNA double-strand break 99.4 1.8E-12 6.1E-17 141.8 11.8 69 111-188 250-327 (339)
91 1wb9_A DNA mismatch repair pro 99.3 3.7E-13 1.3E-17 162.7 5.9 146 25-196 595-751 (800)
92 2og2_A Putative signal recogni 99.3 4.6E-13 1.6E-17 148.0 5.9 124 29-172 148-313 (359)
93 1ewq_A DNA mismatch repair pro 99.3 2.3E-13 7.7E-18 163.7 3.5 121 25-177 566-702 (765)
94 3sop_A Neuronal-specific septi 99.3 5.6E-14 1.9E-18 149.5 -2.2 119 42-176 4-153 (270)
95 2eyu_A Twitching motility prot 99.3 2E-13 7E-18 144.5 0.9 125 26-188 15-146 (261)
96 2v9p_A Replication protein E1; 99.3 2.7E-15 9.2E-20 162.4 -14.5 145 9-201 101-264 (305)
97 2cvh_A DNA repair and recombin 99.2 5.5E-11 1.9E-15 119.9 9.2 150 28-190 9-185 (220)
98 3jvv_A Twitching mobility prot 99.1 7E-12 2.4E-16 138.5 1.5 119 38-189 121-245 (356)
99 2i3b_A HCR-ntpase, human cance 99.1 8.4E-13 2.9E-17 133.3 -5.8 140 40-195 1-168 (189)
100 1rj9_A FTSY, signal recognitio 99.1 3.2E-11 1.1E-15 130.5 6.0 123 39-176 101-261 (304)
101 1pzn_A RAD51, DNA repair and r 99.1 7.1E-11 2.4E-15 130.0 8.9 161 32-197 125-309 (349)
102 3aez_A Pantothenate kinase; tr 99.1 7.3E-13 2.5E-17 143.8 -8.3 131 38-190 88-245 (312)
103 2qnr_A Septin-2, protein NEDD5 99.1 2.9E-12 9.8E-17 138.3 -3.9 140 13-174 2-168 (301)
104 2qag_C Septin-7; cell cycle, c 99.1 1E-11 3.5E-16 139.9 -0.2 145 8-176 10-180 (418)
105 3asz_A Uridine kinase; cytidin 99.1 9.2E-13 3.1E-17 133.1 -8.8 119 38-173 4-161 (211)
106 1f2t_B RAD50 ABC-ATPase; DNA d 99.0 1.9E-10 6.5E-15 111.8 7.0 75 108-191 56-141 (148)
107 1pui_A ENGB, probable GTP-bind 99.0 2.7E-11 9.3E-16 121.2 0.7 139 9-161 3-199 (210)
108 3pih_A Uvrabc system protein A 99.0 9E-11 3.1E-15 143.2 5.0 81 114-203 469-560 (916)
109 2r6f_A Excinuclease ABC subuni 99.0 2.3E-10 7.8E-15 139.3 8.1 82 113-203 508-600 (972)
110 1n0w_A DNA repair protein RAD5 99.0 7.3E-10 2.5E-14 113.3 9.9 154 33-190 19-209 (243)
111 1nlf_A Regulatory protein REPA 99.0 9.1E-10 3.1E-14 116.6 9.3 133 34-176 26-184 (279)
112 2jeo_A Uridine-cytidine kinase 98.9 1.5E-10 5.1E-15 120.5 1.4 37 25-63 12-48 (245)
113 3ec2_A DNA replication protein 98.9 9.6E-10 3.3E-14 108.3 6.3 110 32-174 32-144 (180)
114 2ygr_A Uvrabc system protein A 98.9 3.3E-10 1.1E-14 138.3 2.9 82 113-203 525-617 (993)
115 2vf7_A UVRA2, excinuclease ABC 98.9 8.9E-10 3.1E-14 133.5 6.1 81 114-203 384-475 (842)
116 2qag_B Septin-6, protein NEDD5 98.9 1.4E-10 4.8E-15 130.6 -1.6 150 9-172 16-218 (427)
117 1s96_A Guanylate kinase, GMP k 98.9 4E-10 1.4E-14 116.3 1.1 115 38-177 14-144 (219)
118 1lw7_A Transcriptional regulat 98.8 2.5E-10 8.4E-15 126.0 -0.6 147 27-188 157-342 (365)
119 2bdt_A BH3686; alpha-beta prot 98.8 1.3E-10 4.6E-15 115.2 -4.8 61 126-200 120-181 (189)
120 1htw_A HI0065; nucleotide-bind 98.8 3E-10 1E-14 111.5 -2.5 53 12-74 10-62 (158)
121 2ewv_A Twitching motility prot 98.7 1.4E-09 4.9E-14 120.6 1.4 108 38-187 134-256 (372)
122 3lda_A DNA repair protein RAD5 98.7 1.1E-08 3.6E-13 114.8 8.0 135 33-173 173-328 (400)
123 2kjq_A DNAA-related protein; s 98.7 9E-09 3.1E-13 99.7 5.5 90 39-173 35-125 (149)
124 4ido_A Atlastin-1; GTPase, GTP 98.7 1.2E-07 4.2E-12 107.3 14.1 305 41-367 68-430 (457)
125 3e70_C DPA, signal recognition 98.6 2.1E-08 7.3E-13 109.5 5.5 122 38-174 127-280 (328)
126 4ad8_A DNA repair protein RECN 98.5 2.9E-08 9.9E-13 114.5 4.1 67 114-190 402-473 (517)
127 3kta_B Chromosome segregation 98.5 5.1E-08 1.7E-12 97.1 5.3 71 108-188 63-140 (173)
128 2gza_A Type IV secretion syste 98.5 1.2E-08 4.1E-13 112.7 -0.2 121 29-191 166-303 (361)
129 2o5v_A DNA replication and rep 98.5 1.3E-07 4.4E-12 104.6 7.5 73 114-201 270-354 (359)
130 2yhs_A FTSY, cell division pro 98.5 2.4E-07 8E-12 106.1 8.6 35 28-64 283-317 (503)
131 2dr3_A UPF0273 protein PH0284; 98.4 5.3E-07 1.8E-11 92.1 9.5 60 126-189 130-196 (247)
132 1udx_A The GTP-binding protein 98.4 1.1E-07 3.8E-12 107.0 3.5 129 29-172 148-307 (416)
133 2bbw_A Adenylate kinase 4, AK4 98.3 6.5E-08 2.2E-12 100.3 0.5 27 38-64 25-54 (246)
134 1sxj_E Activator 1 40 kDa subu 98.3 3.3E-07 1.1E-11 99.3 5.2 42 126-176 136-177 (354)
135 2px0_A Flagellar biosynthesis 98.3 2E-07 6.8E-12 100.3 3.2 136 38-194 103-246 (296)
136 3euj_A Chromosome partition pr 98.2 8.2E-07 2.8E-11 101.6 5.6 42 26-74 18-59 (483)
137 2qm8_A GTPase/ATPase; G protei 98.2 7.9E-08 2.7E-12 105.2 -3.9 51 9-64 29-79 (337)
138 1ls1_A Signal recognition part 98.2 2.9E-06 9.8E-11 91.2 8.3 109 39-158 97-209 (295)
139 1w1w_A Structural maintenance 98.2 1.2E-06 4.2E-11 98.5 5.5 69 111-188 335-410 (430)
140 3nwj_A ATSK2; P loop, shikimat 98.1 4.4E-07 1.5E-11 95.4 1.2 51 8-63 16-71 (250)
141 2rcn_A Probable GTPase ENGC; Y 98.1 1.4E-06 4.9E-11 96.1 4.5 28 38-65 213-240 (358)
142 3tr0_A Guanylate kinase, GMP k 98.1 1.4E-06 4.7E-11 86.8 3.8 27 38-64 5-31 (205)
143 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 3.3E-08 1.1E-12 110.4 -9.1 62 126-197 143-207 (392)
144 3lnc_A Guanylate kinase, GMP k 98.1 1.4E-06 4.7E-11 89.3 3.0 37 26-64 15-52 (231)
145 3auy_A DNA double-strand break 98.0 3.4E-06 1.2E-10 93.2 6.3 68 111-188 282-359 (371)
146 1sq5_A Pantothenate kinase; P- 98.0 2.3E-07 8E-12 100.0 -3.3 57 9-74 37-112 (308)
147 2zr9_A Protein RECA, recombina 98.0 5.5E-06 1.9E-10 91.1 6.8 149 34-196 57-236 (349)
148 2r6a_A DNAB helicase, replicat 97.9 1.7E-05 5.7E-10 90.0 9.4 155 27-193 192-402 (454)
149 3c8u_A Fructokinase; YP_612366 97.9 3.8E-06 1.3E-10 84.8 3.5 27 38-64 20-46 (208)
150 1vma_A Cell division protein F 97.9 6.4E-06 2.2E-10 89.0 5.0 32 31-64 97-128 (306)
151 3a00_A Guanylate kinase, GMP k 97.9 4.8E-06 1.6E-10 82.6 3.4 25 40-64 1-25 (186)
152 3kta_A Chromosome segregation 97.9 1.4E-05 4.9E-10 78.2 6.3 33 29-64 18-50 (182)
153 1lvg_A Guanylate kinase, GMP k 97.8 5.4E-06 1.8E-10 83.4 2.8 27 38-64 2-28 (198)
154 1zp6_A Hypothetical protein AT 97.8 8.5E-06 2.9E-10 80.2 3.5 26 38-63 7-32 (191)
155 1oix_A RAS-related protein RAB 97.8 1.1E-05 3.7E-10 79.9 3.4 34 117-158 153-189 (191)
156 3uie_A Adenylyl-sulfate kinase 97.8 8.9E-06 3E-10 81.5 2.8 45 14-63 4-48 (200)
157 2e87_A Hypothetical protein PH 97.7 1E-05 3.4E-10 88.8 3.3 120 40-174 167-293 (357)
158 1kgd_A CASK, peripheral plasma 97.7 1.3E-05 4.4E-10 79.1 3.7 27 38-64 3-29 (180)
159 1p9r_A General secretion pathw 97.7 3.2E-06 1.1E-10 95.3 -1.4 33 38-74 165-197 (418)
160 1u0l_A Probable GTPase ENGC; p 97.7 1.7E-05 5.7E-10 85.2 3.7 28 38-65 167-194 (301)
161 1qhl_A Protein (cell division 97.7 2.3E-06 7.9E-11 88.7 -3.4 49 9-74 9-57 (227)
162 1jjv_A Dephospho-COA kinase; P 97.7 0.00017 5.8E-09 72.0 10.3 22 42-63 4-25 (206)
163 2j41_A Guanylate kinase; GMP, 97.6 2.6E-05 9.1E-10 77.4 3.9 27 38-64 4-30 (207)
164 4eun_A Thermoresistant glucoki 97.6 2.6E-05 8.9E-10 78.0 3.7 26 38-63 27-52 (200)
165 3hr8_A Protein RECA; alpha and 97.6 0.00011 3.7E-09 81.1 8.5 126 34-173 57-198 (356)
166 1fnn_A CDC6P, cell division co 97.6 0.00013 4.6E-09 79.1 9.0 28 37-64 39-68 (389)
167 2oap_1 GSPE-2, type II secreti 97.6 1.8E-05 6.2E-10 91.3 1.8 36 27-64 249-284 (511)
168 3vaa_A Shikimate kinase, SK; s 97.5 4E-05 1.4E-09 76.6 3.8 38 24-63 11-48 (199)
169 3tau_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 76.2 3.9 27 38-64 6-32 (208)
170 2yv5_A YJEQ protein; hydrolase 97.5 6.3E-05 2.1E-09 80.9 4.4 27 38-65 163-189 (302)
171 2vp4_A Deoxynucleoside kinase; 97.5 4.1E-05 1.4E-09 78.5 2.8 26 38-63 18-43 (230)
172 1t9h_A YLOQ, probable GTPase E 97.5 1.8E-05 6.2E-10 85.6 0.1 31 33-65 168-198 (307)
173 3t34_A Dynamin-related protein 97.4 7.8E-05 2.7E-09 81.7 4.8 35 26-65 25-59 (360)
174 2ce7_A Cell division protein F 97.4 7.2E-05 2.4E-09 85.6 4.6 105 43-175 52-166 (476)
175 2o5v_A DNA replication and rep 97.4 0.00011 3.7E-09 81.2 4.9 45 11-63 5-49 (359)
176 1knq_A Gluconate kinase; ALFA/ 97.3 9.5E-05 3.3E-09 71.8 3.8 26 38-63 6-31 (175)
177 1kag_A SKI, shikimate kinase I 97.3 8.6E-05 3E-09 71.7 3.0 24 40-63 4-27 (173)
178 4e22_A Cytidylate kinase; P-lo 97.3 0.00011 3.6E-09 76.8 3.8 27 38-64 25-54 (252)
179 1w1w_A Structural maintenance 97.3 0.00011 3.7E-09 82.5 3.9 45 9-64 6-50 (430)
180 1svm_A Large T antigen; AAA+ f 97.3 8.9E-05 3E-09 82.4 2.7 37 25-63 156-192 (377)
181 3ney_A 55 kDa erythrocyte memb 97.3 0.00015 5E-09 73.6 3.9 27 38-64 17-43 (197)
182 2x8a_A Nuclear valosin-contain 97.2 0.00011 3.8E-09 77.8 3.0 34 26-63 34-67 (274)
183 1rz3_A Hypothetical protein rb 97.2 0.00011 3.7E-09 73.7 2.7 26 38-63 20-45 (201)
184 2xau_A PRE-mRNA-splicing facto 97.2 0.00018 6.3E-09 86.9 4.9 126 38-175 107-254 (773)
185 1in4_A RUVB, holliday junction 97.2 1.8E-05 6.1E-10 86.0 -4.2 52 10-64 19-75 (334)
186 3tqc_A Pantothenate kinase; bi 97.1 8.3E-05 2.9E-09 80.9 0.7 23 42-64 94-116 (321)
187 2qby_A CDC6 homolog 1, cell di 97.1 0.00015 5E-09 78.4 1.8 27 37-63 42-68 (386)
188 1v5w_A DMC1, meiotic recombina 97.1 0.00099 3.4E-08 72.7 8.4 135 34-173 118-274 (343)
189 3kl4_A SRP54, signal recogniti 97.0 0.00057 1.9E-08 77.2 6.5 25 39-63 96-120 (433)
190 1nij_A Hypothetical protein YJ 97.0 0.00026 9E-09 76.5 3.4 24 41-64 5-28 (318)
191 1ixz_A ATP-dependent metallopr 97.0 0.00024 8.1E-09 73.4 3.0 34 26-63 39-72 (254)
192 2ius_A DNA translocase FTSK; n 97.0 0.00012 3.9E-09 84.5 0.6 25 38-62 165-189 (512)
193 2gj8_A MNME, tRNA modification 97.0 0.00043 1.5E-08 67.1 4.2 29 37-65 1-29 (172)
194 2pez_A Bifunctional 3'-phospho 97.0 0.00037 1.3E-08 68.1 3.6 27 37-63 2-28 (179)
195 2f1r_A Molybdopterin-guanine d 97.0 0.0001 3.5E-09 72.9 -0.4 24 41-64 3-26 (171)
196 1iy2_A ATP-dependent metallopr 96.9 0.00029 1E-08 74.0 2.8 34 26-63 63-96 (278)
197 2qt1_A Nicotinamide riboside k 96.9 0.00045 1.5E-08 69.1 3.4 26 38-63 19-44 (207)
198 2f9l_A RAB11B, member RAS onco 96.9 0.00047 1.6E-08 68.2 3.4 24 42-65 7-30 (199)
199 1cke_A CK, MSSA, protein (cyti 96.9 0.00051 1.7E-08 69.3 3.6 24 40-63 5-28 (227)
200 2p67_A LAO/AO transport system 96.9 7E-05 2.4E-09 81.8 -3.0 50 10-64 31-80 (341)
201 3lxx_A GTPase IMAP family memb 96.8 0.00039 1.3E-08 71.2 2.6 24 42-65 31-54 (239)
202 3cr8_A Sulfate adenylyltranfer 96.8 0.00031 1.1E-08 81.7 1.5 27 38-64 367-393 (552)
203 2z43_A DNA repair and recombin 96.8 0.0024 8.1E-08 69.0 8.3 136 34-173 103-258 (324)
204 2z4s_A Chromosomal replication 96.8 0.0011 3.7E-08 74.9 5.8 105 40-173 130-237 (440)
205 1zu4_A FTSY; GTPase, signal re 96.8 0.00059 2E-08 74.1 3.3 34 29-64 96-129 (320)
206 2if2_A Dephospho-COA kinase; a 96.7 0.00071 2.4E-08 67.2 3.1 22 42-63 3-24 (204)
207 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.001 3.4E-08 64.0 3.7 23 41-63 24-46 (149)
208 1ypw_A Transitional endoplasmi 96.6 0.0028 9.5E-08 77.0 8.2 26 38-63 236-261 (806)
209 3b9p_A CG5977-PA, isoform A; A 96.6 0.0037 1.3E-07 65.8 7.8 26 38-63 52-77 (297)
210 1odf_A YGR205W, hypothetical 3 96.5 0.0012 4.1E-08 70.6 3.8 27 38-64 29-55 (290)
211 2qor_A Guanylate kinase; phosp 96.5 0.0011 3.7E-08 66.4 3.2 26 38-63 10-35 (204)
212 2dy1_A Elongation factor G; tr 96.5 0.00085 2.9E-08 79.8 2.5 27 38-64 7-33 (665)
213 4a1f_A DNAB helicase, replicat 96.5 0.0048 1.6E-07 67.5 8.2 122 28-171 36-164 (338)
214 2www_A Methylmalonic aciduria 96.5 0.0013 4.6E-08 71.9 3.8 27 38-64 72-98 (349)
215 2zej_A Dardarin, leucine-rich 96.4 0.0012 4.1E-08 64.3 2.8 22 42-63 4-25 (184)
216 2j69_A Bacterial dynamin-like 96.4 0.079 2.7E-06 63.2 18.9 26 40-65 69-94 (695)
217 2wji_A Ferrous iron transport 96.4 0.0015 5E-08 62.6 3.2 24 42-65 5-28 (165)
218 1ega_A Protein (GTP-binding pr 96.4 0.0013 4.4E-08 70.5 2.9 28 38-65 6-33 (301)
219 1u94_A RECA protein, recombina 96.3 0.0053 1.8E-07 67.6 7.1 28 34-63 59-86 (356)
220 4eaq_A DTMP kinase, thymidylat 96.2 0.0024 8.1E-08 65.7 3.9 26 38-63 24-49 (229)
221 2yvu_A Probable adenylyl-sulfa 96.2 0.0027 9.3E-08 62.2 3.9 26 38-63 11-36 (186)
222 3t61_A Gluconokinase; PSI-biol 96.2 0.0019 6.6E-08 64.2 2.9 23 41-63 19-41 (202)
223 2wjg_A FEOB, ferrous iron tran 96.2 0.0024 8.1E-08 61.8 3.3 23 42-64 9-31 (188)
224 1m2o_B GTP-binding protein SAR 96.2 0.0033 1.1E-07 61.7 4.3 43 26-71 12-54 (190)
225 1f6b_A SAR1; gtpases, N-termin 96.2 0.0014 4.8E-08 65.0 1.6 38 25-65 13-50 (198)
226 3ice_A Transcription terminati 96.1 0.0014 4.6E-08 73.1 1.5 50 10-63 134-197 (422)
227 4ad8_A DNA repair protein RECN 96.1 0.0015 5.2E-08 75.1 1.7 33 28-63 51-83 (517)
228 3qks_A DNA double-strand break 96.1 0.0031 1.1E-07 63.5 3.7 23 41-63 24-46 (203)
229 4fcw_A Chaperone protein CLPB; 96.1 0.0048 1.6E-07 65.1 5.2 24 41-64 48-71 (311)
230 3k1j_A LON protease, ATP-depen 96.1 0.0018 6.1E-08 76.0 2.1 38 25-64 47-84 (604)
231 2qag_A Septin-2, protein NEDD5 96.0 0.00066 2.3E-08 74.7 -1.6 45 9-64 17-61 (361)
232 3cm0_A Adenylate kinase; ATP-b 96.0 0.0031 1.1E-07 61.4 3.2 24 39-62 3-26 (186)
233 1y63_A LMAJ004144AAA protein; 96.0 0.004 1.4E-07 61.3 3.9 31 31-63 3-33 (184)
234 1q3t_A Cytidylate kinase; nucl 96.0 0.0037 1.3E-07 63.9 3.8 26 38-63 14-39 (236)
235 1np6_A Molybdopterin-guanine d 96.0 0.0036 1.2E-07 61.9 3.5 23 41-63 7-29 (174)
236 3bh0_A DNAB-like replicative h 96.0 0.014 4.9E-07 62.7 8.5 123 28-171 58-189 (315)
237 3kb2_A SPBC2 prophage-derived 95.9 0.0037 1.3E-07 59.6 3.3 22 42-63 3-24 (173)
238 1m7g_A Adenylylsulfate kinase; 95.9 0.0042 1.4E-07 62.4 3.7 26 38-63 23-48 (211)
239 3lw7_A Adenylate kinase relate 95.7 0.0051 1.7E-07 58.3 3.2 19 42-60 3-21 (179)
240 3auy_A DNA double-strand break 95.7 0.0083 2.9E-07 65.9 5.4 22 41-62 26-47 (371)
241 1mky_A Probable GTP-binding pr 95.7 0.0047 1.6E-07 69.5 3.3 24 42-65 182-205 (439)
242 1qhx_A CPT, protein (chloramph 95.7 0.0059 2E-07 58.9 3.5 24 40-63 3-26 (178)
243 1kht_A Adenylate kinase; phosp 95.6 0.0066 2.3E-07 58.9 3.6 24 40-63 3-26 (192)
244 2q6t_A DNAB replication FORK h 95.5 0.029 9.8E-07 63.2 9.0 34 28-63 190-223 (444)
245 2nzj_A GTP-binding protein REM 95.5 0.0076 2.6E-07 57.1 3.6 25 42-66 6-30 (175)
246 1upt_A ARL1, ADP-ribosylation 95.5 0.0097 3.3E-07 56.1 4.3 30 42-71 9-38 (171)
247 2jaq_A Deoxyguanosine kinase; 95.5 0.0074 2.5E-07 59.2 3.5 22 42-63 2-23 (205)
248 1vht_A Dephospho-COA kinase; s 95.4 0.0078 2.7E-07 60.4 3.7 23 41-63 5-27 (218)
249 1sxj_C Activator 1 40 kDa subu 95.4 0.0036 1.2E-07 67.6 1.2 37 26-64 32-70 (340)
250 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0043 1.5E-07 68.3 1.8 37 25-63 9-47 (359)
251 1r8s_A ADP-ribosylation factor 95.4 0.01 3.4E-07 55.8 4.1 30 42-71 2-31 (164)
252 2p5t_B PEZT; postsegregational 95.4 0.0062 2.1E-07 63.2 2.9 26 38-63 30-55 (253)
253 2dhr_A FTSH; AAA+ protein, hex 95.4 0.0074 2.5E-07 69.3 3.7 33 27-63 55-87 (499)
254 3pqc_A Probable GTP-binding pr 95.4 0.0087 3E-07 57.8 3.7 32 42-73 25-56 (195)
255 3k53_A Ferrous iron transport 95.4 0.0066 2.3E-07 63.5 3.0 24 42-65 5-28 (271)
256 2ze6_A Isopentenyl transferase 95.4 0.0076 2.6E-07 62.8 3.4 22 42-63 3-24 (253)
257 3q72_A GTP-binding protein RAD 95.4 0.0057 2E-07 57.6 2.2 24 42-65 4-27 (166)
258 4dcu_A GTP-binding protein ENG 95.3 0.0094 3.2E-07 67.4 4.3 24 42-65 25-48 (456)
259 2qtf_A Protein HFLX, GTP-bindi 95.3 0.0069 2.4E-07 66.8 3.0 24 42-65 181-204 (364)
260 1ex7_A Guanylate kinase; subst 95.3 0.008 2.7E-07 60.2 3.1 22 42-63 3-24 (186)
261 2ged_A SR-beta, signal recogni 95.3 0.0085 2.9E-07 58.2 3.2 24 42-65 50-73 (193)
262 1fzq_A ADP-ribosylation factor 95.3 0.005 1.7E-07 59.8 1.5 32 42-73 18-49 (181)
263 1xp8_A RECA protein, recombina 95.3 0.045 1.5E-06 60.4 9.3 27 34-62 70-96 (366)
264 2rhm_A Putative kinase; P-loop 95.2 0.0096 3.3E-07 58.0 3.5 26 38-63 3-28 (193)
265 1z2a_A RAS-related protein RAB 95.2 0.0092 3.2E-07 56.0 3.1 24 42-65 7-30 (168)
266 1via_A Shikimate kinase; struc 95.2 0.0086 2.9E-07 58.0 2.9 22 42-63 6-27 (175)
267 1ly1_A Polynucleotide kinase; 95.2 0.01 3.4E-07 57.1 3.3 21 42-62 4-24 (181)
268 3m6a_A ATP-dependent protease 95.2 0.0091 3.1E-07 69.2 3.5 32 29-63 100-131 (543)
269 1lv7_A FTSH; alpha/beta domain 95.2 0.01 3.5E-07 61.2 3.5 22 42-63 47-68 (257)
270 2ce2_X GTPase HRAS; signaling 95.1 0.0091 3.1E-07 55.6 2.8 24 42-65 5-28 (166)
271 1kao_A RAP2A; GTP-binding prot 95.1 0.01 3.5E-07 55.4 3.2 24 42-65 5-28 (167)
272 1j8m_F SRP54, signal recogniti 95.1 0.011 3.6E-07 63.5 3.6 31 31-64 92-122 (297)
273 1u8z_A RAS-related protein RAL 95.1 0.01 3.5E-07 55.4 3.1 24 42-65 6-29 (168)
274 1gtv_A TMK, thymidylate kinase 95.1 0.0046 1.6E-07 61.5 0.7 22 42-63 2-23 (214)
275 2dyk_A GTP-binding protein; GT 95.1 0.011 3.7E-07 55.2 3.2 23 42-64 3-25 (161)
276 2erx_A GTP-binding protein DI- 95.1 0.01 3.6E-07 55.7 3.1 24 42-65 5-28 (172)
277 2v54_A DTMP kinase, thymidylat 95.1 0.012 4.1E-07 58.0 3.6 25 39-63 3-27 (204)
278 3r20_A Cytidylate kinase; stru 95.1 0.011 3.7E-07 61.3 3.4 22 42-63 11-32 (233)
279 1z0j_A RAB-22, RAS-related pro 95.1 0.011 3.7E-07 55.6 3.2 24 42-65 8-31 (170)
280 3iij_A Coilin-interacting nucl 95.1 0.01 3.5E-07 57.7 3.0 25 39-63 10-34 (180)
281 1ek0_A Protein (GTP-binding pr 95.0 0.011 3.8E-07 55.4 3.1 24 42-65 5-28 (170)
282 1xjc_A MOBB protein homolog; s 95.0 0.012 4.1E-07 58.1 3.4 22 42-63 6-27 (169)
283 1z08_A RAS-related protein RAB 95.0 0.012 4.1E-07 55.4 3.2 24 42-65 8-31 (170)
284 1ky3_A GTP-binding protein YPT 95.0 0.012 4E-07 56.0 3.2 24 42-65 10-33 (182)
285 1uf9_A TT1252 protein; P-loop, 95.0 0.013 4.4E-07 57.6 3.5 24 40-63 8-31 (203)
286 2plr_A DTMP kinase, probable t 95.0 0.013 4.4E-07 57.8 3.5 24 40-63 4-27 (213)
287 1g16_A RAS-related protein SEC 95.0 0.011 3.7E-07 55.6 2.8 24 42-65 5-28 (170)
288 3trf_A Shikimate kinase, SK; a 95.0 0.013 4.4E-07 57.0 3.5 24 40-63 5-28 (185)
289 1c1y_A RAS-related protein RAP 94.9 0.012 4.2E-07 55.1 3.1 24 42-65 5-28 (167)
290 1gvn_B Zeta; postsegregational 94.9 0.013 4.5E-07 62.2 3.7 26 38-63 31-56 (287)
291 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.013 4.3E-07 55.8 3.2 24 42-65 9-32 (177)
292 1moz_A ARL1, ADP-ribosylation 94.9 0.007 2.4E-07 58.0 1.2 24 42-65 20-43 (183)
293 2fn4_A P23, RAS-related protei 94.9 0.012 4.2E-07 55.9 2.9 24 42-65 11-34 (181)
294 3ake_A Cytidylate kinase; CMP 94.8 0.014 4.8E-07 57.6 3.4 22 42-63 4-25 (208)
295 3q85_A GTP-binding protein REM 94.8 0.012 4.3E-07 55.4 2.9 23 42-64 4-26 (169)
296 3tw8_B RAS-related protein RAB 94.8 0.011 3.7E-07 56.2 2.5 24 42-65 11-34 (181)
297 2c95_A Adenylate kinase 1; tra 94.8 0.015 5E-07 56.9 3.5 25 39-63 8-32 (196)
298 1nks_A Adenylate kinase; therm 94.8 0.013 4.5E-07 56.8 3.1 22 42-63 3-24 (194)
299 1svi_A GTP-binding protein YSX 94.8 0.011 3.8E-07 57.3 2.6 23 42-64 25-47 (195)
300 1r2q_A RAS-related protein RAB 94.8 0.014 4.8E-07 54.7 3.1 24 42-65 8-31 (170)
301 2wwf_A Thymidilate kinase, put 94.8 0.014 5E-07 57.7 3.4 26 38-63 8-33 (212)
302 3iev_A GTP-binding protein ERA 94.8 0.025 8.7E-07 60.5 5.5 25 42-66 12-36 (308)
303 1tev_A UMP-CMP kinase; ploop, 94.8 0.015 5.2E-07 56.4 3.4 24 40-63 3-26 (196)
304 3clv_A RAB5 protein, putative; 94.8 0.014 4.9E-07 56.2 3.2 24 42-65 9-32 (208)
305 4dsu_A GTPase KRAS, isoform 2B 94.7 0.015 5E-07 55.8 3.2 24 42-65 6-29 (189)
306 2iwr_A Centaurin gamma 1; ANK 94.7 0.016 5.6E-07 55.3 3.5 32 42-73 9-40 (178)
307 2lkc_A Translation initiation 94.7 0.019 6.5E-07 54.6 3.8 25 41-65 9-33 (178)
308 2ohf_A Protein OLA1, GTP-bindi 94.7 0.013 4.5E-07 65.4 3.0 26 39-64 21-46 (396)
309 1ksh_A ARF-like protein 2; sma 94.7 0.019 6.6E-07 55.3 3.9 23 42-64 20-42 (186)
310 3b1v_A Ferrous iron uptake tra 94.7 0.014 4.9E-07 61.5 3.2 23 42-64 5-27 (272)
311 2oil_A CATX-8, RAS-related pro 94.7 0.015 5.2E-07 56.5 3.2 24 42-65 27-50 (193)
312 3bc1_A RAS-related protein RAB 94.7 0.015 5.2E-07 55.8 3.1 24 42-65 13-36 (195)
313 1nn5_A Similar to deoxythymidy 94.6 0.017 5.8E-07 57.2 3.4 25 39-63 8-32 (215)
314 2y8e_A RAB-protein 6, GH09086P 94.6 0.015 5.1E-07 55.1 2.8 24 42-65 16-39 (179)
315 2hxs_A RAB-26, RAS-related pro 94.6 0.017 5.8E-07 54.9 3.2 24 42-65 8-31 (178)
316 2cxx_A Probable GTP-binding pr 94.6 0.013 4.5E-07 56.3 2.5 24 42-65 3-26 (190)
317 2z0h_A DTMP kinase, thymidylat 94.6 0.017 5.9E-07 56.4 3.3 22 42-63 2-23 (197)
318 3lxw_A GTPase IMAP family memb 94.6 0.015 5.3E-07 60.1 3.1 24 42-65 23-46 (247)
319 1wf3_A GTP-binding protein; GT 94.6 0.023 7.9E-07 60.8 4.5 24 42-65 9-32 (301)
320 1z0f_A RAB14, member RAS oncog 94.5 0.018 6E-07 54.7 3.1 24 42-65 17-40 (179)
321 2g6b_A RAS-related protein RAB 94.5 0.018 6E-07 54.9 3.1 24 42-65 12-35 (180)
322 2a9k_A RAS-related protein RAL 94.5 0.018 6.1E-07 55.0 3.1 24 42-65 20-43 (187)
323 3con_A GTPase NRAS; structural 94.5 0.018 6.2E-07 55.7 3.1 24 42-65 23-46 (190)
324 1jwy_B Dynamin A GTPase domain 94.5 0.018 6E-07 61.0 3.3 24 42-65 26-49 (315)
325 3dm5_A SRP54, signal recogniti 94.4 0.087 3E-06 59.6 9.0 25 39-63 99-123 (443)
326 2efe_B Small GTP-binding prote 94.4 0.02 6.7E-07 54.7 3.2 24 42-65 14-37 (181)
327 3cf0_A Transitional endoplasmi 94.4 0.02 6.9E-07 60.9 3.5 26 38-63 47-72 (301)
328 2bwj_A Adenylate kinase 5; pho 94.4 0.02 6.9E-07 56.0 3.3 24 40-63 12-35 (199)
329 2bov_A RAla, RAS-related prote 94.4 0.019 6.6E-07 56.0 3.1 24 42-65 16-39 (206)
330 3t1o_A Gliding protein MGLA; G 94.4 0.02 6.7E-07 55.2 3.1 23 42-64 16-38 (198)
331 2bme_A RAB4A, RAS-related prot 94.4 0.018 6.3E-07 55.2 2.8 24 42-65 12-35 (186)
332 2vli_A Antibiotic resistance p 94.4 0.018 6.1E-07 55.7 2.8 25 39-63 4-28 (183)
333 2ffh_A Protein (FFH); SRP54, s 94.3 0.018 6.3E-07 64.8 3.2 26 39-64 97-122 (425)
334 3t5d_A Septin-7; GTP-binding p 94.3 0.015 5E-07 61.0 2.2 23 42-64 10-32 (274)
335 1vg8_A RAS-related protein RAB 94.3 0.021 7.1E-07 55.9 3.2 24 42-65 10-33 (207)
336 3ihw_A Centg3; RAS, centaurin, 94.3 0.022 7.6E-07 55.5 3.2 24 42-65 22-45 (184)
337 2gf9_A RAS-related protein RAB 94.3 0.022 7.4E-07 55.3 3.1 24 42-65 24-47 (189)
338 2gf0_A GTP-binding protein DI- 94.2 0.02 6.9E-07 55.6 2.9 24 42-65 10-33 (199)
339 4bas_A ADP-ribosylation factor 94.2 0.023 7.9E-07 55.1 3.3 25 42-66 19-43 (199)
340 2h17_A ADP-ribosylation factor 94.2 0.017 5.9E-07 55.7 2.3 24 42-65 23-46 (181)
341 3kkq_A RAS-related protein M-R 94.2 0.022 7.7E-07 54.5 3.1 24 42-65 20-43 (183)
342 2pbr_A DTMP kinase, thymidylat 94.2 0.024 8.2E-07 55.1 3.3 22 42-63 2-23 (195)
343 3fb4_A Adenylate kinase; psych 94.2 0.023 8E-07 56.6 3.3 22 42-63 2-23 (216)
344 3tkl_A RAS-related protein RAB 94.2 0.023 7.8E-07 55.0 3.1 24 42-65 18-41 (196)
345 2fg5_A RAB-22B, RAS-related pr 94.2 0.021 7.3E-07 55.7 2.9 24 42-65 25-48 (192)
346 1nrj_B SR-beta, signal recogni 94.2 0.023 7.8E-07 56.4 3.1 24 42-65 14-37 (218)
347 1mh1_A RAC1; GTP-binding, GTPa 94.2 0.024 8.1E-07 54.2 3.1 24 42-65 7-30 (186)
348 1zj6_A ADP-ribosylation factor 94.1 0.021 7.2E-07 55.2 2.8 24 42-65 18-41 (187)
349 1m7b_A RND3/RHOE small GTP-bin 94.1 0.022 7.5E-07 55.1 2.8 24 42-65 9-32 (184)
350 1zd9_A ADP-ribosylation factor 94.1 0.035 1.2E-06 53.9 4.2 24 42-65 24-47 (188)
351 3bos_A Putative DNA replicatio 94.1 0.03 1E-06 55.8 3.9 25 39-63 51-75 (242)
352 2cdn_A Adenylate kinase; phosp 94.1 0.031 1.1E-06 55.3 3.9 26 38-63 18-43 (201)
353 3iby_A Ferrous iron transport 94.1 0.023 7.7E-07 59.3 3.0 23 42-64 3-25 (256)
354 2xtp_A GTPase IMAP family memb 94.1 0.022 7.5E-07 58.7 2.9 23 42-64 24-46 (260)
355 1z06_A RAS-related protein RAB 94.0 0.026 8.9E-07 54.7 3.2 24 42-65 22-45 (189)
356 1ukz_A Uridylate kinase; trans 94.0 0.03 1E-06 55.3 3.6 25 39-63 14-38 (203)
357 1e6c_A Shikimate kinase; phosp 94.0 0.024 8.1E-07 54.3 2.8 22 42-63 4-25 (173)
358 2wsm_A Hydrogenase expression/ 94.0 0.026 9E-07 56.2 3.2 22 42-63 32-53 (221)
359 2a5j_A RAS-related protein RAB 93.9 0.027 9.3E-07 54.8 3.2 24 42-65 23-46 (191)
360 3t5g_A GTP-binding protein RHE 93.9 0.025 8.5E-07 54.1 2.8 23 42-64 8-30 (181)
361 1zbd_A Rabphilin-3A; G protein 93.9 0.026 9E-07 55.2 3.1 24 42-65 10-33 (203)
362 3dz8_A RAS-related protein RAB 93.9 0.025 8.5E-07 55.0 2.8 23 42-64 25-47 (191)
363 1zd8_A GTP:AMP phosphotransfer 93.9 0.027 9.3E-07 56.9 3.2 25 39-63 6-30 (227)
364 1qf9_A UMP/CMP kinase, protein 93.9 0.026 9E-07 54.6 3.0 23 41-63 7-29 (194)
365 2cjw_A GTP-binding protein GEM 93.9 0.027 9.3E-07 55.3 3.1 22 42-63 8-29 (192)
366 3oes_A GTPase rhebl1; small GT 93.9 0.025 8.6E-07 55.6 2.8 24 42-65 26-49 (201)
367 3dl0_A Adenylate kinase; phosp 93.9 0.029 9.8E-07 56.1 3.3 22 42-63 2-23 (216)
368 2pt5_A Shikimate kinase, SK; a 93.9 0.031 1.1E-06 53.2 3.4 22 42-63 2-23 (168)
369 3bwd_D RAC-like GTP-binding pr 93.9 0.029 9.8E-07 53.5 3.1 23 42-64 10-32 (182)
370 1aky_A Adenylate kinase; ATP:A 93.9 0.032 1.1E-06 56.0 3.6 25 39-63 3-27 (220)
371 2h57_A ADP-ribosylation factor 93.9 0.026 9E-07 54.7 2.9 23 42-64 23-45 (190)
372 3bgw_A DNAB-like replicative h 93.9 0.19 6.6E-06 56.7 10.4 29 33-63 192-220 (444)
373 3cph_A RAS-related protein SEC 93.9 0.028 9.7E-07 55.2 3.1 24 42-65 22-45 (213)
374 2bcg_Y Protein YP2, GTP-bindin 93.9 0.026 8.9E-07 55.5 2.8 24 42-65 10-33 (206)
375 1x3s_A RAS-related protein RAB 93.8 0.029 1E-06 54.1 3.1 24 42-65 17-40 (195)
376 3cbq_A GTP-binding protein REM 93.8 0.019 6.6E-07 56.5 1.9 23 42-64 25-47 (195)
377 2atv_A RERG, RAS-like estrogen 93.8 0.03 1E-06 54.7 3.2 24 42-65 30-53 (196)
378 2p5s_A RAS and EF-hand domain 93.8 0.03 1E-06 54.9 3.2 24 42-65 30-53 (199)
379 2dby_A GTP-binding protein; GD 93.8 0.027 9.3E-07 62.2 3.1 23 42-64 3-25 (368)
380 1uj2_A Uridine-cytidine kinase 93.8 0.03 1E-06 57.8 3.3 23 41-63 23-45 (252)
381 1h65_A Chloroplast outer envel 93.8 0.039 1.3E-06 57.5 4.2 24 42-65 41-64 (270)
382 3reg_A RHO-like small GTPase; 93.8 0.031 1E-06 54.4 3.1 24 42-65 25-48 (194)
383 2il1_A RAB12; G-protein, GDP, 93.7 0.024 8.3E-07 55.3 2.4 24 42-65 28-51 (192)
384 1zuh_A Shikimate kinase; alpha 93.7 0.034 1.2E-06 53.2 3.4 24 40-63 7-30 (168)
385 3a1s_A Iron(II) transport prot 93.7 0.029 1E-06 58.5 3.1 24 42-65 7-30 (258)
386 2aka_B Dynamin-1; fusion prote 93.7 0.025 8.6E-07 59.2 2.6 24 42-65 28-51 (299)
387 3llm_A ATP-dependent RNA helic 93.7 0.034 1.2E-06 56.7 3.5 25 38-62 74-98 (235)
388 3i8s_A Ferrous iron transport 93.7 0.029 1E-06 58.9 3.1 24 42-65 5-28 (274)
389 1zak_A Adenylate kinase; ATP:A 93.7 0.028 9.5E-07 56.6 2.7 24 40-63 5-28 (222)
390 2o52_A RAS-related protein RAB 93.7 0.027 9.3E-07 55.4 2.6 24 42-65 27-50 (200)
391 2iyv_A Shikimate kinase, SK; t 93.7 0.028 9.6E-07 54.6 2.7 22 42-63 4-25 (184)
392 2ew1_A RAS-related protein RAB 93.7 0.029 1E-06 55.7 2.8 24 42-65 28-51 (201)
393 2qu8_A Putative nucleolar GTP- 93.6 0.028 9.7E-07 56.6 2.7 24 42-65 31-54 (228)
394 2fh5_B SR-beta, signal recogni 93.6 0.046 1.6E-06 54.0 4.2 24 42-65 9-32 (214)
395 4dhe_A Probable GTP-binding pr 93.6 0.015 5.3E-07 57.8 0.7 23 42-64 31-53 (223)
396 2fv8_A H6, RHO-related GTP-bin 93.5 0.032 1.1E-06 55.1 2.9 24 42-65 27-50 (207)
397 3cnl_A YLQF, putative uncharac 93.5 0.034 1.2E-06 58.4 3.2 24 42-65 101-124 (262)
398 3c5c_A RAS-like protein 12; GD 93.5 0.036 1.2E-06 53.9 3.2 24 42-65 23-46 (187)
399 1njg_A DNA polymerase III subu 93.5 0.046 1.6E-06 53.9 3.9 24 40-63 45-68 (250)
400 1jal_A YCHF protein; nucleotid 93.4 0.039 1.3E-06 60.8 3.6 23 42-64 4-26 (363)
401 2f7s_A C25KG, RAS-related prot 93.4 0.035 1.2E-06 55.0 3.0 23 42-64 27-49 (217)
402 2grj_A Dephospho-COA kinase; T 93.4 0.039 1.3E-06 55.2 3.3 22 42-63 14-35 (192)
403 2x77_A ADP-ribosylation factor 93.4 0.022 7.7E-07 55.1 1.5 24 42-65 24-47 (189)
404 3def_A T7I23.11 protein; chlor 93.4 0.05 1.7E-06 56.5 4.2 24 42-65 38-61 (262)
405 1a7j_A Phosphoribulokinase; tr 93.4 0.028 9.7E-07 59.8 2.3 24 40-63 5-28 (290)
406 2fu5_C RAS-related protein RAB 93.4 0.025 8.5E-07 54.2 1.7 23 42-64 10-32 (183)
407 2w58_A DNAI, primosome compone 93.3 0.045 1.5E-06 54.0 3.6 23 41-63 55-77 (202)
408 4ag6_A VIRB4 ATPase, type IV s 93.3 0.036 1.2E-06 61.0 3.2 26 39-64 34-59 (392)
409 2q3h_A RAS homolog gene family 93.3 0.037 1.3E-06 54.0 2.9 24 42-65 22-45 (201)
410 1l8q_A Chromosomal replication 93.3 0.036 1.2E-06 59.1 3.0 25 39-63 36-60 (324)
411 1gwn_A RHO-related GTP-binding 93.3 0.036 1.2E-06 55.2 2.8 24 42-65 30-53 (205)
412 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.043 1.5E-06 57.1 3.5 24 40-63 4-27 (260)
413 2b6h_A ADP-ribosylation factor 93.3 0.025 8.4E-07 55.5 1.6 24 42-65 31-54 (192)
414 2xb4_A Adenylate kinase; ATP-b 93.2 0.044 1.5E-06 55.5 3.4 22 42-63 2-23 (223)
415 2gco_A H9, RHO-related GTP-bin 93.2 0.039 1.3E-06 54.3 2.8 24 42-65 27-50 (201)
416 1jbk_A CLPB protein; beta barr 93.2 0.057 2E-06 51.3 4.0 25 39-63 42-66 (195)
417 2j1l_A RHO-related GTP-binding 93.2 0.037 1.3E-06 55.2 2.7 23 42-64 36-58 (214)
418 3llu_A RAS-related GTP-binding 93.2 0.037 1.3E-06 54.2 2.7 22 42-63 22-43 (196)
419 2atx_A Small GTP binding prote 93.2 0.041 1.4E-06 53.4 2.9 24 42-65 20-43 (194)
420 2f6r_A COA synthase, bifunctio 93.1 0.041 1.4E-06 58.1 3.1 24 40-63 75-98 (281)
421 3tlx_A Adenylate kinase 2; str 93.0 0.055 1.9E-06 55.7 3.7 24 39-62 28-51 (243)
422 2hf9_A Probable hydrogenase ni 92.9 0.049 1.7E-06 54.4 3.1 23 42-64 40-62 (226)
423 1q57_A DNA primase/helicase; d 92.8 0.31 1.1E-05 55.5 10.0 47 126-173 356-404 (503)
424 2yc2_C IFT27, small RAB-relate 92.8 0.024 8E-07 55.4 0.5 22 42-63 22-43 (208)
425 2hup_A RAS-related protein RAB 92.7 0.05 1.7E-06 53.6 2.9 24 42-65 31-54 (201)
426 4djt_A GTP-binding nuclear pro 92.7 0.023 8E-07 56.4 0.4 23 42-64 13-35 (218)
427 3cpj_B GTP-binding protein YPT 92.7 0.056 1.9E-06 54.1 3.2 24 42-65 15-38 (223)
428 1e4v_A Adenylate kinase; trans 92.7 0.052 1.8E-06 54.3 3.0 22 42-63 2-23 (214)
429 2g3y_A GTP-binding protein GEM 92.6 0.055 1.9E-06 54.7 3.0 22 42-63 39-60 (211)
430 1ltq_A Polynucleotide kinase; 92.5 0.062 2.1E-06 56.5 3.3 21 42-62 4-24 (301)
431 3be4_A Adenylate kinase; malar 92.4 0.065 2.2E-06 53.9 3.2 25 39-63 4-28 (217)
432 4gzl_A RAS-related C3 botulinu 92.4 0.059 2E-06 53.2 2.8 23 42-64 32-54 (204)
433 1g5t_A COB(I)alamin adenosyltr 92.3 0.27 9.3E-06 49.6 7.7 56 126-189 122-179 (196)
434 3q3j_B RHO-related GTP-binding 92.3 0.065 2.2E-06 53.5 3.1 24 42-65 29-52 (214)
435 1ak2_A Adenylate kinase isoenz 92.3 0.079 2.7E-06 53.9 3.8 25 39-63 15-39 (233)
436 3h4m_A Proteasome-activating n 92.2 0.074 2.5E-06 55.2 3.5 26 38-63 49-74 (285)
437 2j0v_A RAC-like GTP-binding pr 92.2 0.063 2.2E-06 52.9 2.8 24 42-65 11-34 (212)
438 2h92_A Cytidylate kinase; ross 92.2 0.067 2.3E-06 53.4 3.0 23 41-63 4-26 (219)
439 3ld9_A DTMP kinase, thymidylat 92.2 0.079 2.7E-06 54.5 3.6 27 37-63 18-44 (223)
440 3d3q_A TRNA delta(2)-isopenten 92.2 0.068 2.3E-06 58.4 3.3 22 42-63 9-30 (340)
441 4edh_A DTMP kinase, thymidylat 92.2 0.077 2.6E-06 53.9 3.5 26 38-63 4-29 (213)
442 2p65_A Hypothetical protein PF 92.1 0.073 2.5E-06 50.7 3.1 24 40-63 43-66 (187)
443 1sky_E F1-ATPase, F1-ATP synth 92.1 0.078 2.7E-06 60.3 3.7 26 38-63 149-174 (473)
444 3cmw_A Protein RECA, recombina 92.0 0.17 5.9E-06 65.6 7.1 28 34-63 728-755 (1706)
445 3zvl_A Bifunctional polynucleo 91.9 0.082 2.8E-06 59.1 3.6 26 38-63 256-281 (416)
446 3gj0_A GTP-binding nuclear pro 91.9 0.049 1.7E-06 54.3 1.6 22 42-63 17-39 (221)
447 3v9p_A DTMP kinase, thymidylat 91.8 0.077 2.6E-06 54.6 3.0 26 38-63 23-48 (227)
448 2qmh_A HPR kinase/phosphorylas 91.8 0.093 3.2E-06 53.3 3.5 26 38-63 32-57 (205)
449 3lv8_A DTMP kinase, thymidylat 91.7 0.088 3E-06 54.5 3.4 26 38-63 25-50 (236)
450 2x2e_A Dynamin-1; nitration, h 91.7 0.049 1.7E-06 59.3 1.5 24 42-65 33-56 (353)
451 4b4t_J 26S protease regulatory 91.7 0.35 1.2E-05 54.0 8.3 21 43-63 185-205 (405)
452 1sxj_D Activator 1 41 kDa subu 91.6 0.095 3.3E-06 55.8 3.6 21 43-63 61-81 (353)
453 2ocp_A DGK, deoxyguanosine kin 91.6 0.09 3.1E-06 53.6 3.3 24 40-63 2-25 (241)
454 4tmk_A Protein (thymidylate ki 91.5 0.098 3.3E-06 53.2 3.4 25 39-63 2-26 (213)
455 1puj_A YLQF, conserved hypothe 91.5 0.093 3.2E-06 55.6 3.3 23 42-64 122-144 (282)
456 3exa_A TRNA delta(2)-isopenten 91.5 0.1 3.4E-06 56.6 3.6 24 40-63 3-26 (322)
457 2v1u_A Cell division control p 91.5 0.081 2.8E-06 56.8 2.9 26 38-63 42-67 (387)
458 3umf_A Adenylate kinase; rossm 91.4 0.12 3.9E-06 53.0 3.8 26 38-63 27-52 (217)
459 2hjg_A GTP-binding protein ENG 91.3 0.079 2.7E-06 59.4 2.7 24 42-65 5-28 (436)
460 3crm_A TRNA delta(2)-isopenten 91.3 0.1 3.6E-06 56.6 3.5 22 42-63 7-28 (323)
461 2qz4_A Paraplegin; AAA+, SPG7, 91.2 0.13 4.4E-06 52.5 3.9 24 40-63 39-62 (262)
462 3a8t_A Adenylate isopentenyltr 91.2 0.11 3.8E-06 56.7 3.6 25 39-63 39-63 (339)
463 3cmu_A Protein RECA, recombina 91.1 0.38 1.3E-05 63.4 8.9 28 34-63 379-406 (2050)
464 1p5z_B DCK, deoxycytidine kina 91.1 0.069 2.4E-06 55.3 1.8 26 38-63 22-47 (263)
465 3tmk_A Thymidylate kinase; pho 91.1 0.12 4E-06 52.9 3.4 25 39-63 4-28 (216)
466 3th5_A RAS-related C3 botulinu 90.3 0.044 1.5E-06 53.9 0.0 23 42-64 32-54 (204)
467 3p32_A Probable GTPase RV1496/ 90.8 0.12 4.1E-06 56.3 3.4 25 39-63 78-102 (355)
468 3l0i_B RAS-related protein RAB 90.7 0.029 1E-06 55.0 -1.5 23 42-64 35-57 (199)
469 4b4t_I 26S protease regulatory 90.6 0.52 1.8E-05 53.1 8.4 23 41-63 217-239 (437)
470 3r7w_A Gtpase1, GTP-binding pr 90.6 0.12 3.9E-06 55.3 3.0 22 42-63 5-26 (307)
471 3cmw_A Protein RECA, recombina 90.6 0.32 1.1E-05 63.3 7.4 28 34-63 379-406 (1706)
472 1wxq_A GTP-binding protein; st 90.5 0.11 3.6E-06 58.0 2.7 23 42-64 2-24 (397)
473 4b4t_H 26S protease regulatory 90.5 0.47 1.6E-05 53.9 8.0 24 40-63 243-266 (467)
474 2v3c_C SRP54, signal recogniti 90.4 0.11 3.8E-06 58.5 2.8 23 41-63 100-122 (432)
475 3sr0_A Adenylate kinase; phosp 90.4 0.14 4.8E-06 51.7 3.3 22 42-63 2-23 (206)
476 3foz_A TRNA delta(2)-isopenten 90.4 0.14 4.8E-06 55.4 3.4 23 41-63 11-33 (316)
477 3geh_A MNME, tRNA modification 90.4 0.14 4.8E-06 58.2 3.6 25 41-65 225-249 (462)
478 3ec1_A YQEH GTPase; atnos1, at 90.2 0.13 4.5E-06 56.5 3.2 24 40-63 162-185 (369)
479 2qpt_A EH domain-containing pr 90.2 0.12 4.1E-06 60.0 2.9 24 42-65 67-90 (550)
480 2chg_A Replication factor C sm 90.1 0.14 4.9E-06 49.7 3.0 22 42-63 40-61 (226)
481 1ko7_A HPR kinase/phosphatase; 90.0 0.15 5.2E-06 55.1 3.3 25 39-63 143-167 (314)
482 1ypw_A Transitional endoplasmi 90.0 0.086 2.9E-06 63.9 1.5 30 32-63 505-534 (806)
483 3syl_A Protein CBBX; photosynt 89.9 0.18 6E-06 52.9 3.7 26 38-63 65-90 (309)
484 2i1q_A DNA repair and recombin 89.8 0.15 5.2E-06 54.4 3.1 28 33-62 93-120 (322)
485 2qby_B CDC6 homolog 3, cell di 89.7 0.18 6.2E-06 54.3 3.6 26 38-63 43-68 (384)
486 2r62_A Cell division protease 89.6 0.088 3E-06 54.2 1.1 21 43-63 47-67 (268)
487 3n70_A Transport activator; si 89.6 0.19 6.4E-06 47.3 3.2 26 38-63 22-47 (145)
488 3h2y_A GTPase family protein; 89.4 0.15 5E-06 56.2 2.6 25 40-64 160-184 (368)
489 2orw_A Thymidine kinase; TMTK, 89.3 0.2 6.8E-06 49.5 3.3 23 39-61 2-25 (184)
490 4hlc_A DTMP kinase, thymidylat 89.1 0.22 7.4E-06 50.2 3.5 24 40-63 2-25 (205)
491 2zts_A Putative uncharacterize 89.1 0.22 7.6E-06 50.0 3.5 25 34-60 26-50 (251)
492 1ofh_A ATP-dependent HSL prote 89.0 0.19 6.4E-06 52.4 3.0 24 40-63 50-73 (310)
493 3eph_A TRNA isopentenyltransfe 88.9 0.19 6.3E-06 56.3 3.0 22 42-63 4-25 (409)
494 3tqf_A HPR(Ser) kinase; transf 88.9 0.22 7.4E-06 49.6 3.2 25 38-62 14-38 (181)
495 3cmu_A Protein RECA, recombina 88.7 0.5 1.7E-05 62.3 7.2 28 33-62 1076-1103(2050)
496 2hjg_A GTP-binding protein ENG 88.6 0.19 6.5E-06 56.3 2.9 24 42-65 177-200 (436)
497 1yrb_A ATP(GTP)binding protein 88.5 0.27 9.1E-06 50.2 3.7 26 38-63 12-37 (262)
498 3sjy_A Translation initiation 88.3 0.22 7.6E-06 55.1 3.2 22 42-63 10-31 (403)
499 1d2n_A N-ethylmaleimide-sensit 88.2 0.26 8.9E-06 51.0 3.5 26 38-63 62-87 (272)
500 2j37_W Signal recognition part 88.1 0.25 8.6E-06 56.7 3.5 25 39-63 100-124 (504)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.8e-34 Score=303.17 Aligned_cols=193 Identities=12% Similarity=0.129 Sum_probs=154.5
Q ss_pred CCCCCCcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----
Q 039839 1 MGMADECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----- 75 (825)
Q Consensus 1 M~M~~~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----- 75 (825)
|+|. .++|+++|++++|++. ..+++++++.+ .+|++++|+||||||||||+|+|+|+. .|.+|+.
T Consensus 1 M~m~--~~~l~i~~ls~~y~~~--~~~L~~isl~i--~~Ge~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~~G~ 70 (275)
T 3gfo_A 1 MSLE--DYILKVEELNYNYSDG--THALKGINMNI--KRGEVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILFDNK 70 (275)
T ss_dssp ---C--CEEEEEEEEEEECTTS--CEEEEEEEEEE--ETTSEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTE
T ss_pred CCCc--CcEEEEEEEEEEECCC--CeEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEECCE
Confidence 5543 3589999999999652 45899999999 999999999999999999999999994 4555541
Q ss_pred ------------cceeeEEcCCC-------ccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHH
Q 039839 76 ------------QTTKGIWIAKC-------VGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQ 116 (825)
Q Consensus 76 ------------q~~~G~~~~~~-------t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQ 116 (825)
+..+|+++|++ ++.+|+.+.....+.+..+..+.+ ..+|||
T Consensus 71 ~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ 150 (275)
T 3gfo_A 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKK 150 (275)
T ss_dssp ECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred ECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH
Confidence 23589998853 567888887766565543322221 223999
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhh-CCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-SPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~-~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
||+|||||+ ++|||||||+|||+.. +..++++++++. ++ |+|||+||||++.+. .+||++++|++|+|
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~~~------~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~-~~~drv~~l~~G~i 222 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDPMG------VSEIMKLLVEMQKEL-GITIIIATHDIDIVP-LYCDNVFVMKEGRV 222 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHHH-CCEEEEEESCCSSGG-GGCSEEEEEETTEE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHH------HHHHHHHHHHHHhhC-CCEEEEEecCHHHHH-HhCCEEEEEECCEE
Confidence 999999999 9999999999999999 999999999997 44 999999999998884 58999999999999
Q ss_pred EEecCcccccCCccccccc
Q 039839 193 WDAVPKPQTLKNTPLSEFF 211 (825)
Q Consensus 193 ~~~g~~~e~l~~~~l~d~f 211 (825)
+..|++.+++....+...+
T Consensus 223 ~~~g~~~~~~~~~~~~~~~ 241 (275)
T 3gfo_A 223 ILQGNPKEVFAEKEVIRKV 241 (275)
T ss_dssp EEEECHHHHTHHHHHHHHH
T ss_pred EEECCHHHHhcCHHHHHHc
Confidence 9999988876544433333
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.98 E-value=1.1e-32 Score=304.68 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=154.2
Q ss_pred cceEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------
Q 039839 7 CCCMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------- 75 (825)
.+||+++|+++.|+... ...+++++++.+ .+|+++||+||||||||||||+|+|+ ..|++|+.
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i--~~Gei~~IiGpnGaGKSTLlr~i~GL----~~p~~G~I~i~G~~i~~~ 95 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHV--PAGQIYGVIGASGAGKSTLIRCVNLL----ERPTEGSVLVDGQELTTL 95 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEEEEEETTEECSSC
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEE--cCCCEEEEEcCCCchHHHHHHHHhcC----CCCCceEEEECCEECCcC
Confidence 35899999999996421 246899999999 99999999999999999999999999 45555541
Q ss_pred --------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhh--------------------HHHHHHHHHH
Q 039839 76 --------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDT--------------------TFEKQSALFA 121 (825)
Q Consensus 76 --------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~--------------------~~ErQRv~iA 121 (825)
+..+|+++|. .++.+|+.+++...+.+..+..+.+. .+|||||+||
T Consensus 96 ~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp CHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 2458999875 36688999988777765544332222 2299999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
|||+ +||||||||++||+.. +..++++++++.++.|+|||+||||++.+. .+||++++|++|+|++.|++
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~------~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~-~~aDrv~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPAT------TRSILELLKDINRRLGLTILLITHEMDVVK-RICDCVAVISNGELIEQDTV 248 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHSCCEEEEEESCHHHHH-HHCSEEEEEETTEEEECCBH
T ss_pred HHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEEECCEEEEEcCH
Confidence 9999 9999999999999999 999999999998766999999999998873 58999999999999999998
Q ss_pred ccccCC
Q 039839 199 PQTLKN 204 (825)
Q Consensus 199 ~e~l~~ 204 (825)
.+++.+
T Consensus 249 ~ev~~~ 254 (366)
T 3tui_C 249 SEVFSH 254 (366)
T ss_dssp HHHHSS
T ss_pred HHHHhC
Confidence 887654
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=1.4e-32 Score=303.48 Aligned_cols=180 Identities=14% Similarity=0.206 Sum_probs=149.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~----~p~~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSL--DPGEILFIIGASGCGKTTLLRCLAGFE----QPDSGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEEESTTSSHHHHHHHHHTSS----CCSEEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEE--cCCCEEEEECCCCchHHHHHHHHhcCC----CCCCcEEEECCEECcccccc
Confidence 6999999999986 67999999999 999999999999999999999999994 4554541
Q ss_pred ----cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA 125 (825)
Q Consensus 76 ----q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa 125 (825)
+..+|+++|. .++.+|+.+++...+....+..+.+ ..+|||||+|||||+
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~ 154 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA 154 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 2457888764 4678899887765554433322221 223999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||++||+.. +..+++.++++.++.|+|+|+||||++++ +.+||+|++|++|+|+..|++.+++
T Consensus 155 ~~P~lLLLDEPts~LD~~~------r~~l~~~l~~~~~~~g~tvi~vTHd~~ea-~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 155 PDPELILLDEPFSALDEQL------RRQIREDMIAALRANGKSAVFVSHDREEA-LQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp TCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHTTCEEEEECCCHHHH-HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999998 99999988888766699999999999877 3689999999999999999988876
Q ss_pred CC
Q 039839 203 KN 204 (825)
Q Consensus 203 ~~ 204 (825)
..
T Consensus 228 ~~ 229 (359)
T 3fvq_A 228 RQ 229 (359)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=2.9e-32 Score=302.95 Aligned_cols=179 Identities=14% Similarity=0.177 Sum_probs=153.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++|+|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|++|+.
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl----~~p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDI--HEGEFVVFVGPSGCGKSTLLRMIAGL----ETITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTS----SCCSEEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEE--CCCCEEEEEcCCCchHHHHHHHHHcC----CCCCCeEEEECCEECCCCCHH
Confidence 5999999999986 67999999999 99999999999999999999999999 45566651
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhh--------------------HHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDT--------------------TFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~--------------------~~ErQRv~iArALa---~ 126 (825)
+..+|+++|. +++.+|+.+++...+.+..+..+++. .+|||||+|||||+ +
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 2458888765 46789999988877766544332222 22999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
||||||||++||+.. +..+++.|+++.++.|+|+|+||||++++ +.+||+|++|++|+|+..|++.+++.
T Consensus 154 lLLLDEPts~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 154 VFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHH-HHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCCcCCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHH-HHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999 99999999999876699999999999877 36899999999999999999888764
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=6.6e-32 Score=285.63 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=143.6
Q ss_pred CcceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------
Q 039839 6 ECCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------- 75 (825)
Q Consensus 6 ~~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------- 75 (825)
..+||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 4 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~ 74 (257)
T 1g6h_A 4 TMEILRTENIVKYFGE---FKALDGVSISV--NKGDVTLIIGPNGSGKSTLINVITGFL----KADEGRVYFENKDITNK 74 (257)
T ss_dssp CCEEEEEEEEEEEETT---EEEEEEECCEE--ETTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECTTC
T ss_pred CCcEEEEeeeEEEECC---EeeEeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCC
Confidence 3457999999999976 56999999999 999999999999999999999999994 4555541
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHh--hC-----------CChhhhhhhh--------------------
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDL--EG-----------SDSRERGEDD-------------------- 110 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~--~g-----------~~~~er~e~~-------------------- 110 (825)
+..+|+++|. .++.+|+.+.... .+ ....+..+.+
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred CHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 1247888765 3567787775432 12 1111111111
Q ss_pred hHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 111 TTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 111 ~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
..+|||||+|||||+ ++|||||||++||+.. +..++++++++.++ |+|||+||||++.+. .+||++++|
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-~~~d~v~~l 226 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL------AHDIFNHVLELKAK-GITFLIIEHRLDIVL-NYIDHLYVM 226 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCCSTTG-GGCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHH-HhCCEEEEE
Confidence 123999999999999 9999999999999999 99999999999876 999999999998773 589999999
Q ss_pred eCCeEEEecCccc
Q 039839 188 DIQKIWDAVPKPQ 200 (825)
Q Consensus 188 ~~GkI~~~g~~~e 200 (825)
++|+++..|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999988766
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=8.1e-32 Score=286.59 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=155.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+.
T Consensus 10 ~~l~~~~l~~~~~~---~~vL~~vsl~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl----~~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ---QALINDVSLHI--ASGEMVAIIGPNGAGKSTLLRLLTGY----LSPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECCTTSCHHHHHHHHTSS----SCCSSCEEEETTEETTTSCH
T ss_pred ceEEEEeEEEEeCC---eeEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCcEEEECCEECCcCCH
Confidence 47999999999987 67999999999 99999999999999999999999999 45666651
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhhCCC-hhhh-----------------hhhhhHHHHHHHHHHHHHH---
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLEGSD-SRER-----------------GEDDTTFEKQSALFALAIA--- 125 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~g~~-~~er-----------------~e~~~~~ErQRv~iArALa--- 125 (825)
...+|+++|. .++.+|+.+.....+.. ..++ ......+|||||+|||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~ 160 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLW 160 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTC
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 1246887664 35577777654322111 0111 1122344999999999997
Q ss_pred ------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 126 ------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 126 ------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
++|||||||+|||+.. +..++++++++.++.|+|||+||||++.+. .+||++++|++|+|+..|++.
T Consensus 161 ~~~~~p~lLllDEPts~LD~~~------~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~-~~~d~v~vl~~G~i~~~g~~~ 233 (266)
T 4g1u_C 161 QPQPTPRWLFLDEPTSALDLYH------QQHTLRLLRQLTRQEPLAVCCVLHDLNLAA-LYADRIMLLAQGKLVACGTPE 233 (266)
T ss_dssp CSSCCCEEEEECCCCSSCCHHH------HHHHHHHHHHHHHHSSEEEEEECSCHHHHH-HHCSEEEEEETTEEEEEECHH
T ss_pred ccCCCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHcCCCEEEEEEcCHHHHH-HhCCEEEEEECCEEEEEcCHH
Confidence 4899999999999999 999999999998765689999999998773 589999999999999999998
Q ss_pred cccCCcccccccccccc
Q 039839 200 QTLKNTPLSEFFNVEVT 216 (825)
Q Consensus 200 e~l~~~~l~d~f~~~~~ 216 (825)
+++....+.+.|+..+.
T Consensus 234 ~~~~~~~l~~~~~~~~~ 250 (266)
T 4g1u_C 234 EVLNAETLTQWYQADLG 250 (266)
T ss_dssp HHCCHHHHHHHCCSCEE
T ss_pred HHhCcHHHHHHhCCCcE
Confidence 88877777777776543
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=2.1e-31 Score=276.28 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=141.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 3 ~~l~~~~l~~~y~~---~~~l~~vsl~i--~~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 3 EILRAENIKKVIRG---YEILKGISLSV--KKGEFVSIIGASGSGKSTLLYILGLLD----APTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEETTEECCSSCH
T ss_pred cEEEEEeEEEEECC---EeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCCCCH
Confidence 47999999999976 57899999999 999999999999999999999999994 4555541
Q ss_pred -------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHH
Q 039839 76 -------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFAL 122 (825)
Q Consensus 76 -------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iAr 122 (825)
...+|+++|. .++.+|+.+.....+....+..+. ...+|||||+||+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 1347888775 356788887665544332221111 1223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
||+ ++|||||||++||+.. +..++++++++.++ |+|||+||||++.+. +||++++|++|+++..|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~--~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSAN------TKRVMDIFLKINEG-GTSIVMVTHERELAE--LTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHT--TSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHH--hCCEEEEEECCEEEEEee
Confidence 999 9999999999999999 99999999999877 999999999997654 899999999999998885
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=1.4e-31 Score=284.33 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=145.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+||+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 23 ~~l~i~~l~~~y~~---~~vL~~vsl~i--~~Gei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 23 QMIDVHQLKKSFGS---LEVLKGINVHI--REGEVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp CSEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEESSSTTC
T ss_pred heEEEEeEEEEECC---EEEEEeeEEEE--cCCCEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEECCEECCCccc
Confidence 37999999999976 56899999999 999999999999999999999999994 4444441
Q ss_pred -----cceeeEEcCC------CccchhHHHHH-HhhCCChhhhhhh--------------------hhHHHHHHHHHHHH
Q 039839 76 -----QTTKGIWIAK------CVGIEPFTIAM-DLEGSDSRERGED--------------------DTTFEKQSALFALA 123 (825)
Q Consensus 76 -----q~~~G~~~~~------~t~~enl~l~l-d~~g~~~~er~e~--------------------~~~~ErQRv~iArA 123 (825)
...+||++|. .++.+|+.+.. ...+....+..+. ...+|||||+||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 1247888775 35678887753 3334332221111 12239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++|||||||++||+.. +..++++++++.++ |+|||+||||++.+. .+||++++|++|+|+..|++++
T Consensus 174 L~~~p~lllLDEPts~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEM------VGEVLSVMKQLANE-GMTMVVVTHEMGFAR-EVGDRVLFMDGGYIIEEGKPED 245 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHH-HHCSEEEEEETTEEEEEECHHH
T ss_pred HHCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999999 99999999999876 999999999997763 5799999999999999998776
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
++.
T Consensus 246 ~~~ 248 (263)
T 2olj_A 246 LFD 248 (263)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.7e-31 Score=279.02 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=142.3
Q ss_pred eEEEEEeEEEecCcc-ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVDG-LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~-l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|+++.|+... ...+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i--~~Ge~~~iiG~nGsGKSTLl~~l~Gl----~~p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNI--KEGEFVSIMGPSGSGKSTMLNIIGCL----DKPTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEE--cCCCEEEEECCCCCcHHHHHHHHhcC----CCCCceEEEECCEEcccCCH
Confidence 489999999996421 135899999999 99999999999999999999999999 45565651
Q ss_pred -------cceeeEEcCCC------ccchhHHHHHHhh---CCChhhh---------------------hhhhhHHHHHHH
Q 039839 76 -------QTTKGIWIAKC------VGIEPFTIAMDLE---GSDSRER---------------------GEDDTTFEKQSA 118 (825)
Q Consensus 76 -------q~~~G~~~~~~------t~~enl~l~ld~~---g~~~~er---------------------~e~~~~~ErQRv 118 (825)
+..+|+++|.. ++.+|+.+++... +....+. ......+|||||
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence 12489987753 5678887765432 1221111 112233499999
Q ss_pred HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEe
Q 039839 119 LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 119 ~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
+|||||+ ++|||||||++||+.. +..++++++++.++.|+|||+||||++.+. +||++++|++|+|+..
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~--~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKT------GEKIMQLLKKLNEEDGKTVVVVTHDINVAR--FGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHHT--TSSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEcCCHHHHH--hCCEEEEEECCEEEEE
Confidence 9999999 9999999999999999 999999999997655899999999998554 8999999999999999
Q ss_pred cCcccc
Q 039839 196 VPKPQT 201 (825)
Q Consensus 196 g~~~e~ 201 (825)
+++.+.
T Consensus 227 ~~~~~~ 232 (235)
T 3tif_A 227 EKLRGF 232 (235)
T ss_dssp EECC--
T ss_pred cChhhh
Confidence 876553
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=4.2e-31 Score=279.64 Aligned_cols=177 Identities=12% Similarity=0.108 Sum_probs=145.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+.
T Consensus 15 ~l~i~~l~~~y~~---~~vl~~vsl~i--~~Gei~~l~G~NGsGKSTLlk~l~Gl----~~p~~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 15 AVVVKDLRKRIGK---KEILKGISFEI--EEGEIFGLIGPNGAGKTTTLRIISTL----IKPSSGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHTTS----SCCSEEEEEETTEETTTCHHH
T ss_pred eEEEEEEEEEECC---EEEEEeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhcC----CCCCceEEEECCEECCccHHH
Confidence 7999999999976 57999999999 99999999999999999999999999 45555541
Q ss_pred -cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh--------------------hhhHHHHHHHHHHHHHH---
Q 039839 76 -QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE--------------------DDTTFEKQSALFALAIA--- 125 (825)
Q Consensus 76 -q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e--------------------~~~~~ErQRv~iArALa--- 125 (825)
+..+||++|. .++.+|+.+.....+....+..+ ....+||||++||+||+
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 165 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 165 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2347888765 36678888765544443221111 11223999999999999
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++|||||||++||+.. +..++++++++.++ |+|||+||||++.+. .+||++++|++|+++..|+++++.
T Consensus 166 ~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tiiivtHd~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 166 RLAILDEPTSGLDVLN------AREVRKILKQASQE-GLTILVSSHNMLEVE-FLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp SEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEEECCHHHHT-TTCSEEEEEETTEEEEEEEHHHHH
T ss_pred CEEEEeCCccccCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-HHCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999 99999999999865 999999999997764 579999999999999998876653
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=2.5e-31 Score=293.33 Aligned_cols=182 Identities=13% Similarity=0.173 Sum_probs=151.7
Q ss_pred cceEEEEEeEEEe-cCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------
Q 039839 7 CCCMQLIDGNGEF-NVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y-~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------- 75 (825)
.++|+++|++++| +. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 12 ~~~l~~~~l~~~y~g~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG---ARSVRGVSFQI--REGEMVGLLGPSGSGKTTILRLIAGLE----RPTKGDVWIGGKRVTDL 82 (355)
T ss_dssp CEEEEEEEEEECCTTS---TTCEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTC
T ss_pred CceEEEEEEEEEEcCC---CEEEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHhCCC----CCCccEEEECCEECCcC
Confidence 4689999999999 65 56899999999 999999999999999999999999994 4555541
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH-
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA- 125 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa- 125 (825)
+..+|+++|. .++.+|+.+++...+.+..+..+.+ ..+|||||+|||||+
T Consensus 83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 2457888664 4778999998776655443322221 223999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+. .+||++++|++|+|+..|++.+++.
T Consensus 163 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~-~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQI------RRELRTFVRQVHDEMGVTSVFVTHDQEEAL-EVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp CCSEEEEESTTCCSSHHH------HHHHHHHHHHHHHHHTCEEEEECSCHHHHH-HHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHHH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999 999999999997656899999999998773 5899999999999999999887764
Q ss_pred C
Q 039839 204 N 204 (825)
Q Consensus 204 ~ 204 (825)
.
T Consensus 236 ~ 236 (355)
T 1z47_A 236 K 236 (355)
T ss_dssp S
T ss_pred C
Confidence 3
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.8e-31 Score=296.25 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=148.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTI--KDGEFLVLLGPSGCGKTTTLRMIAGLE----EPTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCC----CCCceEEEECCEECCCCChh
Confidence 5999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhhhH--------------------HHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDDTT--------------------FEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~~~--------------------~ErQRv~iArALa---~ 126 (825)
+..+|+++|. .++.+|+.+++...+.+..+..+.+.. +|||||+|||||+ +
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2457888764 467889888765555443332222211 1999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
+|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+ +.+||++++|++|+|+..|++.+++..
T Consensus 162 lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 162 VLLMDEPLSNLDAKL------RVAMRAEIKKLQQKLKVTTIYVTHDQVEA-MTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEEESTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEcCCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999 99999999999765689999999999877 358999999999999999998887653
No 13
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=4.6e-31 Score=278.78 Aligned_cols=190 Identities=14% Similarity=0.182 Sum_probs=151.1
Q ss_pred ceEEEEEeEEEec-CccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcC
Q 039839 8 CCMQLIDGNGEFN-VDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIA 84 (825)
Q Consensus 8 ~~Lel~nlsk~y~-~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~ 84 (825)
+||+++|+++.|+ . ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+. ...+||++|
T Consensus 3 ~~l~i~~l~~~y~~~---~~vl~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl----~~p~~G~I~~~~~i~~v~q 73 (253)
T 2nq2_C 3 KALSVENLGFYYQAE---NFLFQQLNFDL--NKGDILAVLGQNGCGKSTLLDLLLGI----HRPIQGKIEVYQSIGFVPQ 73 (253)
T ss_dssp EEEEEEEEEEEETTT---TEEEEEEEEEE--ETTCEEEEECCSSSSHHHHHHHHTTS----SCCSEEEEEECSCEEEECS
T ss_pred ceEEEeeEEEEeCCC---CeEEEEEEEEE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEEeccEEEEcC
Confidence 3799999999997 5 57899999999 99999999999999999999999999 56777874 356888876
Q ss_pred CC------ccchhHHHHHHhh-C---CChhhhhh--------------------hhhHHHHHHHHHHHHHH---HHheec
Q 039839 85 KC------VGIEPFTIAMDLE-G---SDSRERGE--------------------DDTTFEKQSALFALAIA---DIVLIN 131 (825)
Q Consensus 85 ~~------t~~enl~l~ld~~-g---~~~~er~e--------------------~~~~~ErQRv~iArALa---~VLLLD 131 (825)
.. ++.+|+.+..... + ....+..+ ....+||||++|||||+ ++||||
T Consensus 74 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 43 5577887754321 1 11111111 11223999999999999 999999
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCCccccccc
Q 039839 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKNTPLSEFF 211 (825)
Q Consensus 132 EPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~~~l~d~f 211 (825)
|||++||+.. +..+++.+.++.++.|+|||+||||++.+. .+||++++|++|+ +..|++++++....+.+.|
T Consensus 154 EPts~LD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~d~v~~l~~G~-~~~g~~~~~~~~~~~~~~~ 225 (253)
T 2nq2_C 154 EPTSALDLAN------QDIVLSLLIDLAQSQNMTVVFTTHQPNQVV-AIANKTLLLNKQN-FKFGETRNILTSENLTALF 225 (253)
T ss_dssp SSSTTSCHHH------HHHHHHHHHHHHHTSCCEEEEEESCHHHHH-HHCSEEEEEETTE-EEEEEHHHHCCHHHHHHHH
T ss_pred CCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEeCCe-EecCCHHHHhCcHHHHHHh
Confidence 9999999999 999999999997655899999999998763 4899999999999 8888877766544455555
Q ss_pred ccc
Q 039839 212 NVE 214 (825)
Q Consensus 212 ~~~ 214 (825)
+..
T Consensus 226 ~~~ 228 (253)
T 2nq2_C 226 HLP 228 (253)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=3.7e-31 Score=280.82 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=144.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 5 ~~l~i~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG---HEVLKGVSLQA--RAGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEECCEEEC
T ss_pred ceEEEeeEEEEECC---EEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEcccccc
Confidence 37999999999976 56899999999 999999999999999999999999994 4444431
Q ss_pred ----------------cceeeEEcCCC------ccchhHHHHH-HhhCCChhhh---------------------hhhhh
Q 039839 76 ----------------QTTKGIWIAKC------VGIEPFTIAM-DLEGSDSRER---------------------GEDDT 111 (825)
Q Consensus 76 ----------------q~~~G~~~~~~------t~~enl~l~l-d~~g~~~~er---------------------~e~~~ 111 (825)
+..+|+++|.. ++.+|+.+.. ...+.+..+. .....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 12478887753 5678887743 3333322111 11123
Q ss_pred HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 112 TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 112 ~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.+|||||+|||||+ +||||||||+|||+.. +..++++++++.++ |+|||+||||++.+. .+||++++|+
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~-~~~d~v~~l~ 227 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPEL------VGEVLRIMQQLAEE-GKTMVVVTHEMGFAR-HVSSHVIFLH 227 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHT-TCCEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 34999999999999 9999999999999999 99999999999876 999999999998773 5799999999
Q ss_pred CCeEEEecCcccccC
Q 039839 189 IQKIWDAVPKPQTLK 203 (825)
Q Consensus 189 ~GkI~~~g~~~e~l~ 203 (825)
+|+++..|++.+++.
T Consensus 228 ~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 228 QGKIEEEGDPEQVFG 242 (262)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999998776543
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.7e-31 Score=292.83 Aligned_cols=180 Identities=16% Similarity=0.175 Sum_probs=150.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKI--KDGEFMALLGPSGSGKSTLLYTIAGIY----KPTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEE--CCCCEEEEECCCCchHHHHHHHHhcCC----CCCceEEEECCEECCcCCHh
Confidence 5999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArALa---~ 126 (825)
+..+|+++|. .++.+|+.+++...+.+..+..+.+ ..+|||||+|||||+ +
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2458888764 4678999988766555443322221 223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
+|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+ +.+||++++|++|+|+..|++.+++..
T Consensus 154 lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 154 VLLLDEPLSNLDALL------RLEVRAELKRLQKELGITTVYVTHDQAEA-LAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEEESGGGGSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECccccCCHHH------HHHHHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999 99999999999765589999999999877 358999999999999999998887654
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=3.1e-31 Score=293.15 Aligned_cols=180 Identities=13% Similarity=0.130 Sum_probs=148.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEV--KDGEFVALLGPSGCGKTTTLLMLAGIY----KPTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEEcCCCchHHHHHHHHHCCC----CCCccEEEECCEECCCCChh
Confidence 5999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhh--------------------hhHHHHHHHHHHHHHH---H
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGED--------------------DTTFEKQSALFALAIA---D 126 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~--------------------~~~~ErQRv~iArALa---~ 126 (825)
+..+|+++|. .++.+|+.+++...+.+..+..+. ...+|||||+|||||+ +
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2458888765 467889888765444332221111 1223999999999999 9
Q ss_pred HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 127 VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
+|||||||++||+.. +..+.+.++++.++.|+|+|+||||++.+ ..+||++++|++|+|+..|++.+++..
T Consensus 154 lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 154 VLLFDEPLSNLDANL------RMIMRAEIKHLQQELGITSVYVTHDQAEA-MTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999 99999999999765689999999999877 358999999999999999998887654
No 17
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=9.4e-31 Score=290.73 Aligned_cols=180 Identities=13% Similarity=0.163 Sum_probs=150.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEV--KDGEFMILLGPSGCGKTTTLRMIAGLE----EPSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCcHHHHHHHHHHcCC----CCCccEEEECCEECcccccc
Confidence 6999999999976 56899999999 999999999999999999999999994 4444441
Q ss_pred ------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHHH
Q 039839 76 ------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFALA 123 (825)
Q Consensus 76 ------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iArA 123 (825)
+..+||++|+ .++.+|+.+++...+.+..+..+.+ ..+|||||+||||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHH
Confidence 1347888764 4678999998776665543322211 2239999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ ++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+ ..+||++++|++|+|+..|++.+
T Consensus 154 L~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 154 IVRKPQVFLMDEPLSNLDAKL------RVRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHTCCSEEEEECTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEETTEEEEEECHHH
T ss_pred HhcCCCEEEECCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCEEEEEeCCEEEEeCCHHH
Confidence 99 9999999999999999 99999999999765689999999999877 35899999999999999999888
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 227 l~~~ 230 (372)
T 1g29_1 227 VYDK 230 (372)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 7653
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=8.6e-31 Score=274.43 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=142.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+||+++|++++|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 5 ~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA---IHAIKGIDLKV--PRGQIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECTTCCH
T ss_pred ceEEEEeEEEEECC---eeEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCCCH
Confidence 47999999999976 56899999999 999999999999999999999999994 4555541
Q ss_pred ----cceeeEEcCCC------ccchhHHHHHHhhCCChhh---hhh------------------hhhHHHHHHHHHHHHH
Q 039839 76 ----QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRE---RGE------------------DDTTFEKQSALFALAI 124 (825)
Q Consensus 76 ----q~~~G~~~~~~------t~~enl~l~ld~~g~~~~e---r~e------------------~~~~~ErQRv~iArAL 124 (825)
+..+||++|.. ++.+|+.+... .+....+ +.+ ....+||||++|||||
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 12388887753 56778776531 1111111 111 1122399999999999
Q ss_pred H---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 125 A---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 125 a---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+ ++|||||||++||+.. +..+++.++++.++ |+|||+||||++.+. .+||++++|++|+++..|++.++
T Consensus 155 ~~~p~lllLDEPts~LD~~~------~~~l~~~l~~~~~~-g~tvi~vtHd~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPIL------VSEVFEVIQKINQE-GTTILLVEQNALGAL-KVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCCEEEEESCHHHHH-HHCSEEEEEETTEEEEEEEHHHH
T ss_pred HcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 9 9999999999999999 99999999999764 999999999997663 48999999999999999887665
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
+.
T Consensus 227 ~~ 228 (240)
T 1ji0_A 227 LD 228 (240)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=7.1e-31 Score=289.90 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=148.9
Q ss_pred eEEEEEeEEEecCccccc--cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDGLEN--FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~--il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
||+++|++++|+. .. +++++++.+ .+|++++|+||||||||||||+|+|+. .|++|+.
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINI--ENGERFGILGPSGAGKTTFMRIIAGLD----VPSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEE--CTTCEEEEECSCHHHHHHHHHHHHTSS----CCSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEE--CCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECcccc
Confidence 5999999999976 46 899999999 999999999999999999999999994 4444441
Q ss_pred -------cceeeEEcCC------CccchhHHHHHHhhCCChhhhhhhh--------------------hHHHHHHHHHHH
Q 039839 76 -------QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGEDD--------------------TTFEKQSALFAL 122 (825)
Q Consensus 76 -------q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e~~--------------------~~~ErQRv~iAr 122 (825)
+..+|+++|. .++.+|+.+++...+.+..+..+.+ ..+|||||+|||
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 2347888765 4678899887665554433222111 223999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ ++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+ ..+||++++|++|+|+..|++.
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARM------RDSARALVKEVQSRLGVTLLVVSHDPADI-FAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGG------HHHHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSEEEEEETTEEEEEECHH
T ss_pred HHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEECCEEEEEcCHH
Confidence 999 9999999999999999 99999999999765589999999999877 3589999999999999999988
Q ss_pred cccCC
Q 039839 200 QTLKN 204 (825)
Q Consensus 200 e~l~~ 204 (825)
+++..
T Consensus 227 ~l~~~ 231 (353)
T 1oxx_K 227 DLYDN 231 (353)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 77653
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=1e-30 Score=287.98 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=148.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|++++|+. . +++++++.+ .+|++++|+||||||||||||+|+|+ ..|++|+.
T Consensus 1 ml~~~~l~~~y~~---~-~l~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl----~~p~~G~I~~~g~~i~~~~~~ 70 (348)
T 3d31_A 1 MIEIESLSRKWKN---F-SLDNLSLKV--ESGEYFVILGPTGAGKTLFLELIAGF----HVPDSGRILLDGKDVTDLSPE 70 (348)
T ss_dssp CEEEEEEEEECSS---C-EEEEEEEEE--CTTCEEEEECCCTHHHHHHHHHHHTS----SCCSEEEEEETTEECTTSCHH
T ss_pred CEEEEEEEEEECC---E-EEeeeEEEE--cCCCEEEEECCCCccHHHHHHHHHcC----CCCCCcEEEECCEECCCCchh
Confidence 4899999999976 5 899999999 99999999999999999999999999 45555651
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCChhhhhh-----------------hhhHHHHHHHHHHHHHH---HHhe
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDSRERGE-----------------DDTTFEKQSALFALAIA---DIVL 129 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~~er~e-----------------~~~~~ErQRv~iArALa---~VLL 129 (825)
+..+|+++|+ .++.+|+.+++...+.+..++.+ ....+|||||+|||||+ ++||
T Consensus 71 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2357888765 46789998877654433221111 12234999999999999 9999
Q ss_pred ecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccCC
Q 039839 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 130 LDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~~ 204 (825)
|||||++||+.. +..+.+.|+++.++.|+|+|+||||++.+ +.+||++++|++|+|+..|++.+++..
T Consensus 151 LDEP~s~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~~~-~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 151 LDEPLSALDPRT------QENAREMLSVLHKKNKLTVLHITHDQTEA-RIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp EESSSTTSCHHH------HHHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EECccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999 99999999999776699999999999776 358999999999999999998887654
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=9.1e-31 Score=280.37 Aligned_cols=190 Identities=16% Similarity=0.089 Sum_probs=147.5
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.++|+++|+++.|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 19 ~~~l~~~~l~~~y~~---~~vL~~isl~i--~~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG---KTILKKISWQI--AKGDKWILYGLNGAGKTTLLNILNAYE----PATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTBCCC---
T ss_pred CceEEEEeEEEEECC---EEEEEeeeEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEECCEEccccc
Confidence 357999999999976 57899999999 999999999999999999999999994 4444431
Q ss_pred ------cceeeEEcCC--------CccchhHHHHHHh----hCCChhhhhh--------------------hhhHHHHHH
Q 039839 76 ------QTTKGIWIAK--------CVGIEPFTIAMDL----EGSDSRERGE--------------------DDTTFEKQS 117 (825)
Q Consensus 76 ------q~~~G~~~~~--------~t~~enl~l~ld~----~g~~~~er~e--------------------~~~~~ErQR 117 (825)
+..+|+++|. .++.+|+.+.... .+....+..+ ....+||||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 1347888654 1667777664211 1111111111 112339999
Q ss_pred HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEE--EEEecCCCCccccccCcEEEEeCCeE
Q 039839 118 ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL--LFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 118 v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TI--L~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
|+|||||+ ++|||||||++||+.. +..++++++++.++ |+|| |+||||++.+. .+||++++|++|+|
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~-~~~d~v~~l~~G~i 241 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIA------RESLLSILDSLSDS-YPTLAMIYVTHFIEEIT-ANFSKILLLKDGQS 241 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHH-CTTCEEEEEESCGGGCC-TTCCEEEEEETTEE
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHH------HHHHHHHHHHHHHC-CCEEEEEEEecCHHHHH-HhCCEEEEEECCEE
Confidence 99999999 9999999999999999 99999999999876 8999 99999998763 58999999999999
Q ss_pred EEecCcccccCCccccccccc
Q 039839 193 WDAVPKPQTLKNTPLSEFFNV 213 (825)
Q Consensus 193 ~~~g~~~e~l~~~~l~d~f~~ 213 (825)
+..|++++++....+.++|+.
T Consensus 242 ~~~g~~~~~~~~~~~~~~~~~ 262 (279)
T 2ihy_A 242 IQQGAVEDILTSENMSRFFQK 262 (279)
T ss_dssp EEEEEHHHHCSHHHHHHHHTS
T ss_pred EEECCHHHHhccHHHHHHhCC
Confidence 999987776654445555543
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=2e-29 Score=267.95 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=143.7
Q ss_pred eEEEEEeEEEecCccc--cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 9 CMQLIDGNGEFNVDGL--ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l--~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
||+++|+++.|+.... ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i--~~Ge~~~liG~nGsGKSTLl~~i~Gl----~~p~~G~I~~~g~~~~~~~ 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVI--NEGECLLVAGNTGSGKSTLLQIVAGL----IEPTSGDVLYDGERKKGYE 75 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEEEEEETTEECCHHH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCC----CCCCCcEEEECCEECchHH
Confidence 6999999999972111 35899999999 99999999999999999999999999 45555651
Q ss_pred -cceeeEEcCCC-------ccchhHHHHHHhh-----------------CCC--hh--hhhhhhhHHHHHHHHHHHHHH-
Q 039839 76 -QTTKGIWIAKC-------VGIEPFTIAMDLE-----------------GSD--SR--ERGEDDTTFEKQSALFALAIA- 125 (825)
Q Consensus 76 -q~~~G~~~~~~-------t~~enl~l~ld~~-----------------g~~--~~--er~e~~~~~ErQRv~iArALa- 125 (825)
+..+|+++|.. ++.+|+.+..... |.. .. ........+||||++|||||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence 23578988763 4567777643221 111 00 001122344999999999999
Q ss_pred --HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 126 --~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
++|||||||++||+.. +..++++++++.++ |+|||+||||++.+. .+||++++|++|+++..|++.+++.
T Consensus 156 ~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tii~vtHd~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREG------KTDLLRIVEKWKTL-GKTVILISHDIETVI-NHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCCTTTG-GGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCCEEEEcCccccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999 99999999999876 999999999998774 5799999999999999988766543
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=4.7e-30 Score=269.16 Aligned_cols=176 Identities=10% Similarity=0.083 Sum_probs=138.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|+. +++++++.+ .+ ++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 1 ml~~~~l~~~y~~-----~l~~isl~i--~~-e~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 1 MFLKVRAEKRLGN-----FRLNVDFEM--GR-DYCVLLGPTGAGKSVFLELIAGIV----KPDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CCEEEEEEEEETT-----EEEEEEEEE--CS-SEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCTT
T ss_pred CEEEEEEEEEeCC-----EEeeeEEEE--CC-EEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCchh
Confidence 3899999999964 489999999 99 999999999999999999999994 4555541
Q ss_pred cceeeEEcCC------CccchhHHHHHHhhCCCh-hh-----------------hhhhhhHHHHHHHHHHHHHH---HHh
Q 039839 76 QTTKGIWIAK------CVGIEPFTIAMDLEGSDS-RE-----------------RGEDDTTFEKQSALFALAIA---DIV 128 (825)
Q Consensus 76 q~~~G~~~~~------~t~~enl~l~ld~~g~~~-~e-----------------r~e~~~~~ErQRv~iArALa---~VL 128 (825)
+..+|+++|. .++.+|+.+.....+... .+ .......+||||++|||||+ ++|
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 148 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2347887665 355677766432211100 00 01122344999999999999 999
Q ss_pred eecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 129 LLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
||||||+|||+.. +..++++++++.++.|+|||+||||++.+. .+||++++|++|+++..|++.+++.
T Consensus 149 lLDEPts~LD~~~------~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 149 LLDEPLSAVDLKT------KGVLMEELRFVQREFDVPILHVTHDLIEAA-MLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp EEESTTSSCCHHH------HHHHHHHHHHHHHHHTCCEEEEESCHHHHH-HHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999 999999999997545899999999997763 4899999999999999998776543
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=2e-29 Score=268.86 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=142.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
.+|+++|+++.|+......+++++++.+ .+|++++|+||||||||||||+|+|+ +.|.+|+.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLlk~l~Gl----~~p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTL--YPGKVTALVGPNGSGKSTVAALLQNL----YQPTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTS----SCCSEEEEEETTEEGGGBCH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCCEEEECCEEcccCCH
Confidence 4799999999996411146899999999 99999999999999999999999999 45555551
Q ss_pred ---cceeeEEcCCC-----ccchhHHHHHHhhCC-Ch-------------------------hhhhhhhhHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-----VGIEPFTIAMDLEGS-DS-------------------------RERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 ---q~~~G~~~~~~-----t~~enl~l~ld~~g~-~~-------------------------~er~e~~~~~ErQRv~iA 121 (825)
+..+||++|.. ++.+|+.++....+. .. .........+|||||+||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred HHHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence 13478887753 556777664211110 00 001112344599999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
|||+ +||||||||++||+.. +..++++|+++.++.|+|||+||||++.+. .||++++|++|+|+..|++
T Consensus 169 raL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~~~~g~tviivtHd~~~~~--~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGN------QLRVQRLLYESPEWASRTVLLITQQLSLAE--RAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHH------HHHHHHHHHHCTTTTTSEEEEECSCHHHHT--TCSEEEEEETTEEEEEECH
T ss_pred HHHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHH--hCCEEEEEECCEEEEECCH
Confidence 9999 9999999999999999 999999999997655899999999998775 5999999999999999987
Q ss_pred cccc
Q 039839 199 PQTL 202 (825)
Q Consensus 199 ~e~l 202 (825)
.+++
T Consensus 241 ~~l~ 244 (271)
T 2ixe_A 241 LQLM 244 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=8.9e-29 Score=263.23 Aligned_cols=180 Identities=16% Similarity=0.051 Sum_probs=139.0
Q ss_pred cceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------- 75 (825)
.++|+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||||+|+|+.. ..|.+|+.
T Consensus 18 ~~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~--~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED---KAILRGLSLDV--HPGEVHAIMGPNGSGKSTLSATLAGRED--YEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTCTT--CEEEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECC---EEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEECCcCC
Confidence 347999999999976 57999999999 9999999999999999999999999831 12334431
Q ss_pred -----cceeeEEcCCC------ccchhHHHHHH-------------------------hhCCCh--hhhh--hhhhHHHH
Q 039839 76 -----QTTKGIWIAKC------VGIEPFTIAMD-------------------------LEGSDS--RERG--EDDTTFEK 115 (825)
Q Consensus 76 -----q~~~G~~~~~~------t~~enl~l~ld-------------------------~~g~~~--~er~--e~~~~~Er 115 (825)
+..+|+++|.. ++.+++.+... ..|... ..+. .....+||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 12367887764 34455544321 112211 0111 12455699
Q ss_pred HHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc-cCcEEEEeCCe
Q 039839 116 QSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY-LEPILREDIQK 191 (825)
Q Consensus 116 QRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~-~drvlvl~~Gk 191 (825)
|||+|||||+ +||||||||++||+.. +..++++++++.++ |+|||+||||++.+. .. ||++++|++|+
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tviivtHd~~~~~-~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDA------LKVVADGVNSLRDG-KRSFIIVTHYQRILD-YIKPDYVHVLYQGR 242 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHH------HHHHHHHHHTTCCS-SCEEEEECSSGGGGG-TSCCSEEEEEETTE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeeCHHHHH-hhcCCEEEEEECCE
Confidence 9999999999 9999999999999999 99999999999765 999999999998774 44 89999999999
Q ss_pred EEEecCcccc
Q 039839 192 IWDAVPKPQT 201 (825)
Q Consensus 192 I~~~g~~~e~ 201 (825)
++..|+++++
T Consensus 243 i~~~g~~~~~ 252 (267)
T 2zu0_C 243 IVKSGDFTLV 252 (267)
T ss_dssp EEEEECTTHH
T ss_pred EEEEcCHHHH
Confidence 9999986654
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=5.4e-29 Score=262.03 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=140.2
Q ss_pred eEEEEEeEEEe-cCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEF-NVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y-~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
-|+++|++++| ++. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 7 ~~~~~~l~~~y~~~~--~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i~g~~~~~~~~ 78 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS--PVILDNINLSI--KQGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLIDGHDLALADP 78 (247)
T ss_dssp EEEEEEEEEESSTTS--CEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEETTTSCH
T ss_pred ceeEEEEEEEeCCCC--cceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhCCH
Confidence 58999999999 322 56899999999 999999999999999999999999994 4555541
Q ss_pred ---cceeeEEcCCC-----ccchhHHHHHH------------hhCCChh-------------hhhhhhhHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-----VGIEPFTIAMD------------LEGSDSR-------------ERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 ---q~~~G~~~~~~-----t~~enl~l~ld------------~~g~~~~-------------er~e~~~~~ErQRv~iAr 122 (825)
+..+|+++|.. ++.+|+.+... ..+.... ........+||||++|||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp HHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred HHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 23478887754 45566655311 0111100 011234556999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ ++|||||||++||+.. +..++++++++. + |+|||+||||++.+. .||++++|++|+++..|+++
T Consensus 159 aL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~-~-g~tviivtH~~~~~~--~~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYES------EHVIMRNMHKIC-K-GRTVIIIAHRLSTVK--NADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHH------HHHHHHHHHHHH-T-TSEEEEECSSGGGGT--TSSEEEEEETTEEEEEECHH
T ss_pred HHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHc-C-CCEEEEEeCCHHHHH--hCCEEEEEECCEEEEECCHH
Confidence 999 9999999999999999 999999999995 4 899999999998775 59999999999999999877
Q ss_pred cccC
Q 039839 200 QTLK 203 (825)
Q Consensus 200 e~l~ 203 (825)
+++.
T Consensus 229 ~l~~ 232 (247)
T 2ff7_A 229 ELLS 232 (247)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6543
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=3.7e-29 Score=262.40 Aligned_cols=176 Identities=17% Similarity=0.177 Sum_probs=138.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|+++.|++. ..+++++++.+ .+|++++|+||||||||||||+|+|+. .|.+|+.
T Consensus 1 ml~~~~l~~~y~~~--~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 72 (243)
T 1mv5_A 1 MLSARHVDFAYDDS--EQILRDISFEA--QPNSIIAFAGPSGGGKSTIFSLLERFY----QPTAGEITIDGQPIDNISLE 72 (243)
T ss_dssp CEEEEEEEECSSSS--SCSEEEEEEEE--CTTEEEEEECCTTSSHHHHHHHHTTSS----CCSBSCEEETTEESTTTSCS
T ss_pred CEEEEEEEEEeCCC--CceEEEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhCCHH
Confidence 48999999999421 56899999999 999999999999999999999999994 4555541
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHH-------------hhCCChh-------------hhhhhhhHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMD-------------LEGSDSR-------------ERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld-------------~~g~~~~-------------er~e~~~~~ErQRv~iAr 122 (825)
+..+|+++|.. ++.+|+.+.+. ..+.... ........+||||++|||
T Consensus 73 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAr 152 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152 (243)
T ss_dssp CCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred HHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHH
Confidence 23478887754 44566654311 0111100 011234556999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ ++|||||||++||++. +..+++.++++. + |+|+|+||||++.+. .||++++|++|+++..|++.
T Consensus 153 al~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~--~~d~v~~l~~G~i~~~g~~~ 222 (243)
T 1mv5_A 153 AFLRNPKILMLDEATASLDSES------ESMVQKALDSLM-K-GRTTLVIAHRLSTIV--DADKIYFIEKGQITGSGKHN 222 (243)
T ss_dssp HHHHCCSEEEEECCSCSSCSSS------CCHHHHHHHHHH-T-TSEEEEECCSHHHHH--HCSEEEEEETTEECCCSCHH
T ss_pred HHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCChHHHH--hCCEEEEEECCEEEEeCCHH
Confidence 999 9999999999999999 999999999997 4 899999999998764 69999999999999888766
Q ss_pred ccc
Q 039839 200 QTL 202 (825)
Q Consensus 200 e~l 202 (825)
+++
T Consensus 223 ~~~ 225 (243)
T 1mv5_A 223 ELV 225 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=4.9e-29 Score=262.79 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=142.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
+||+++|+++. .+++++++.+ .+|++++|+||||||||||||+|+|+. .|. |+.
T Consensus 3 ~~l~~~~l~~~-------~vl~~vsl~i--~~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 3 IVMQLQDVAES-------TRLGPLSGEV--RAGEILHLVGPNGAGKSTLLARMAGMT----SGK-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEEET-------TTEEEEEEEE--ETTCEEEEECCTTSSHHHHHHHHTTSS----CCE-EEEEETTEEGGGSCH
T ss_pred cEEEEEceEEE-------EEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCC-eEEEECCEECCcCCH
Confidence 47999999986 3789999999 999999999999999999999999994 445 541
Q ss_pred ---cceeeEEcCCC------ccchhHHHHHH-------------hhCCCh--hhhhhhhhHHHHHHHHHHHHHH---H--
Q 039839 76 ---QTTKGIWIAKC------VGIEPFTIAMD-------------LEGSDS--RERGEDDTTFEKQSALFALAIA---D-- 126 (825)
Q Consensus 76 ---q~~~G~~~~~~------t~~enl~l~ld-------------~~g~~~--~er~e~~~~~ErQRv~iArALa---~-- 126 (825)
+..+||++|.. ++.+|+.+... ..|... .........+||||++|||||+ +
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~ 148 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 148 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence 12478887653 45667665321 111110 0011123345999999999999 8
Q ss_pred -----HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 127 -----IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 127 -----VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+|||||||++||+.. +..++++++++.++ |+|||+||||++.+. .+||++++|++|+++..|+++++
T Consensus 149 ~~~~~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tviivtHd~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 149 NPAGQLLLLDEPMNSLDVAQ------QSALDKILSALSQQ-GLAIVMSSHDLNHTL-RHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp CTTCCEEEESSTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHH-HHCSEEEEEETTEEEEEEEHHHH
T ss_pred CCCCeEEEEECCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999 99999999999876 999999999998763 48999999999999999987776
Q ss_pred cC-Ccccccccccc
Q 039839 202 LK-NTPLSEFFNVE 214 (825)
Q Consensus 202 l~-~~~l~d~f~~~ 214 (825)
+. ... .+.|+..
T Consensus 221 ~~~~~~-~~~~~~~ 233 (249)
T 2qi9_C 221 LTPPNL-AQAYGMN 233 (249)
T ss_dssp SCHHHH-HHHHSSC
T ss_pred hcChhH-HHHhCCc
Confidence 54 222 4445443
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=9.3e-29 Score=258.61 Aligned_cols=177 Identities=19% Similarity=0.197 Sum_probs=139.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCCC
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAKC 86 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~~ 86 (825)
+|+++|+++.|+... ..+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+. ...+|+++|..
T Consensus 3 ~l~~~~l~~~y~~~~-~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~I~~~g~i~~v~Q~~ 75 (237)
T 2cbz_A 3 SITVRNATFTWARSD-PPTLNGITFSI--PEGALVAVVGQVGCGKSSLLSALLAE----MDKVEGHVAIKGSVAYVPQQA 75 (237)
T ss_dssp CEEEEEEEEESCTTS-CCSEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTC----SEEEEEEEEECSCEEEECSSC
T ss_pred eEEEEEEEEEeCCCC-CceeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCceEEECCEEEEEcCCC
Confidence 599999999997311 56899999999 99999999999999999999999999 56677763 23478887753
Q ss_pred -----ccchhHHHHHHhh-----------CCCh-------------hhhhhhhhHHHHHHHHHHHHHH---HHheecCCC
Q 039839 87 -----VGIEPFTIAMDLE-----------GSDS-------------RERGEDDTTFEKQSALFALAIA---DIVLINMWC 134 (825)
Q Consensus 87 -----t~~enl~l~ld~~-----------g~~~-------------~er~e~~~~~ErQRv~iArALa---~VLLLDEPt 134 (825)
++.+|+.+..... +... .........+||||++|||||+ ++|||||||
T Consensus 76 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 76 WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 4567776532110 0000 0111234556999999999999 999999999
Q ss_pred CCCccccccCHHHHHHHHHHHH---HhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 135 HDIGREQAANKPLLKTVFQVMM---RLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 135 sgLD~Epta~~~~~~~V~elL~---~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
++||+.. +..+++.+. ++. + |+|+|+||||++.+. .||++++|++|+++..|++++++
T Consensus 156 s~LD~~~------~~~i~~~l~~~~~~~-~-~~tviivtH~~~~~~--~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 156 SAVDAHV------GKHIFENVIGPKGML-K-NKTRILVTHSMSYLP--QVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp TTSCHHH------HHHHHHHTTSTTSTT-T-TSEEEEECSCSTTGG--GSSEEEEEETTEEEEEECHHHHH
T ss_pred cccCHHH------HHHHHHHHHHHHhhc-C-CCEEEEEecChHHHH--hCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999 999999985 342 3 899999999998775 69999999999999999876654
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=3.7e-28 Score=255.96 Aligned_cols=176 Identities=15% Similarity=0.047 Sum_probs=134.7
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
||+++|++++|+. ..+++++++.+ .+|++++|+||||||||||||+|+|+.. ..|.+|+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~--~~p~~G~I~~~g~~~~~~~~~ 75 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVV--PKGEVHALMGPNGAGKSTLGKILAGDPE--YTVERGEILLDGENILELSPD 75 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTCTT--CEEEEEEEEETTEECTTSCHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCceEEEECCEECCCCCHH
Confidence 6999999999976 57999999999 9999999999999999999999999720 12333431
Q ss_pred ---cceeeEEcCC------CccchhHHHHHHh-h--------------------CCC-h-hh-hhhh-hhHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAK------CVGIEPFTIAMDL-E--------------------GSD-S-RE-RGED-DTTFEKQSALFA 121 (825)
Q Consensus 76 ---q~~~G~~~~~------~t~~enl~l~ld~-~--------------------g~~-~-~e-r~e~-~~~~ErQRv~iA 121 (825)
+..+|+++|. .++.+|+.+.... . |.. . .. .... ...+||||++||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred HHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 1125566554 3556777654321 1 221 1 00 0112 455699999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc-cCcEEEEeCCeEEEecC
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY-LEPILREDIQKIWDAVP 197 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~-~drvlvl~~GkI~~~g~ 197 (825)
|||+ ++|||||||++||++. +..++++++++.++ |+|||+||||++.+. .. ||++++|++|+++..|+
T Consensus 156 raL~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDA------LKVVARGVNAMRGP-NFGALVITHYQRILN-YIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHH------HHHHHHHHHHHCST-TCEEEEECSSSGGGG-TSCCSEEEEEETTEEEEEES
T ss_pred HHHHcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhc-CCEEEEEecCHHHHH-HhcCCEEEEEECCEEEEEeC
Confidence 9999 9999999999999999 99999999999764 999999999998774 46 59999999999999887
Q ss_pred cc
Q 039839 198 KP 199 (825)
Q Consensus 198 ~~ 199 (825)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.95 E-value=6.8e-29 Score=269.07 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=143.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|+.. ..+++++++.+ .+|++++|+||||||||||+|+|+|+ +.|.+|+.
T Consensus 53 ~i~~~~vs~~y~~~--~~vL~~isl~i--~~Ge~vaivG~sGsGKSTLl~ll~gl----~~p~~G~I~i~G~~i~~~~~~ 124 (306)
T 3nh6_A 53 RIEFENVHFSYADG--RETLQDVSFTV--MPGQTLALVGPSGAGKSTILRLLFRF----YDISSGCIRIDGQDISQVTQA 124 (306)
T ss_dssp CEEEEEEEEESSTT--CEEEEEEEEEE--CTTCEEEEESSSCHHHHHHHHHHTTS----SCCSEEEEEETTEETTSBCHH
T ss_pred eEEEEEEEEEcCCC--CceeeeeeEEE--cCCCEEEEECCCCchHHHHHHHHHcC----CCCCCcEEEECCEEcccCCHH
Confidence 59999999999642 56899999999 99999999999999999999999999 55666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhh------------CCCh-------------hhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLE------------GSDS-------------RERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~------------g~~~-------------~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|.. ++.+|+.++.... +... .+++.....+||||++||||
T Consensus 125 ~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 125 SLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp HHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 23588988764 4567776643211 1000 01112334559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ +||||||||++||++. ...|++.|.++.+ ++|+|+||||++.+. .||+|++|++|+|++.|++.+
T Consensus 205 L~~~p~iLlLDEPts~LD~~~------~~~i~~~l~~l~~--~~Tvi~itH~l~~~~--~aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSN------ERAIQASLAKVCA--NRTTIVVAHRLSTVV--NADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHH------HHHHHHHHHHHHT--TSEEEEECCSHHHHH--TCSEEEEEETTEEEEEECHHH
T ss_pred HHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEEcChHHHH--cCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999999 9999999999975 689999999998875 599999999999999999877
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
++.
T Consensus 275 l~~ 277 (306)
T 3nh6_A 275 LLS 277 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=1.3e-28 Score=256.26 Aligned_cols=179 Identities=12% Similarity=0.098 Sum_probs=140.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK 85 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~ 85 (825)
.+|+++|+++.|+... ..+++++++.+ .+|++++|+||||||||||||+|+|+ +.|.+|+. ...+||++|.
T Consensus 5 ~~l~~~~l~~~y~~~~-~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~g~i~~v~q~ 77 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG-TPVLKDINFKI--ERGQLLAVAGSTGAGKTSLLMMIMGE----LEPSEGKIKHSGRISFCSQF 77 (229)
T ss_dssp EEEEEEEEEECSSTTS-CCSEEEEEEEE--ETTCEEEEECCTTSSHHHHHHHHTTS----SCCSEEEEEECSCEEEECSS
T ss_pred ceEEEEEEEEEeCCCC-ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CcCCccEEEECCEEEEEecC
Confidence 4799999999995311 56899999999 99999999999999999999999999 56777874 2357888765
Q ss_pred C-----ccchhHHHHHH-----------hhCCChh-------------hhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 86 C-----VGIEPFTIAMD-----------LEGSDSR-------------ERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 86 ~-----t~~enl~l~ld-----------~~g~~~~-------------er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
. ++.+|+.+... ..+.... +.......+||||++|||||+ ++||||||
T Consensus 78 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 3 55677765321 0111100 001234566999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHH-HHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccccC
Q 039839 134 CHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL-~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l~ 203 (825)
|++||+.. +..+++.+ .++. + |+|+|+||||++.+. .||++++|++|+++..|+++++..
T Consensus 158 ts~LD~~~------~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~--~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 158 FGYLDVLT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK--KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp TTTSCHHH------HHHHHHHCCCCCT-T-TSEEEEECCCHHHHH--HCSEEEEEETTEEEEEECHHHHHT
T ss_pred ccCCCHHH------HHHHHHHHHHHhh-C-CCEEEEEcCChHHHH--hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999 99999864 5553 3 789999999997765 599999999999999998776543
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=3.5e-28 Score=257.72 Aligned_cols=178 Identities=17% Similarity=0.121 Sum_probs=139.8
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++|+++|+++.|+......+++++++.+ .+|++++|+||||||||||||+|+|+. .+ +|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFI--PSGTTCALVGHTGSGKSTIAKLLYRFY----DA-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTSS----CC-EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhccC----CC-CeEEEECCEEhhhcCH
Confidence 4699999999997521135899999999 999999999999999999999999994 33 3441
Q ss_pred ---cceeeEEcCCC-----ccchhHHHHHH------------hhCCChh-------------hhhhhhhHHHHHHHHHHH
Q 039839 76 ---QTTKGIWIAKC-----VGIEPFTIAMD------------LEGSDSR-------------ERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 ---q~~~G~~~~~~-----t~~enl~l~ld------------~~g~~~~-------------er~e~~~~~ErQRv~iAr 122 (825)
+..+||++|.. ++.+|+.+... ..+.... ........+||||++|||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAr 168 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168 (260)
T ss_dssp HHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHH
T ss_pred HHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHH
Confidence 23578887754 45677665321 0011000 011234556999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcc
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKP 199 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~ 199 (825)
||+ +||||||||++||+.. +..+++.++++. + ++|+|+||||++.+. .||++++|++|+|+..|+++
T Consensus 169 aL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~l~-~-~~tviivtH~~~~~~--~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 169 CLLKDPKIVIFDEATSSLDSKT------EYLFQKAVEDLR-K-NRTLIIIAHRLSTIS--SAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HHHHCCSEEEEECCCCTTCHHH------HHHHHHHHHHHT-T-TSEEEEECSSGGGST--TCSEEEEEETTEEEEEECHH
T ss_pred HHHcCCCEEEEECccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEcCCHHHHH--hCCEEEEEECCEEEEECCHH
Confidence 999 9999999999999999 999999999995 3 799999999998775 59999999999999999876
Q ss_pred ccc
Q 039839 200 QTL 202 (825)
Q Consensus 200 e~l 202 (825)
+++
T Consensus 239 ~l~ 241 (260)
T 2ghi_A 239 DLL 241 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=1.1e-27 Score=254.44 Aligned_cols=176 Identities=14% Similarity=0.074 Sum_probs=139.8
Q ss_pred eEEEEEeEEEecCc-cccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 9 CMQLIDGNGEFNVD-GLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~-~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
||+++|++++|+.. ....+++++++.+ . |++++|+||||||||||||+|+|+ . |.+|+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i--~-Ge~~~i~G~NGsGKSTLlk~l~Gl----~-p~~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEV--N-GEKVIILGPNGSGKTTLLRAISGL----L-PYSGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEE--C-SSEEEEECCTTSSHHHHHHHHTTS----S-CCEEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEE--C-CEEEEEECCCCCCHHHHHHHHhCC----C-CCCcEEEECCEECcchHH
Confidence 48999999999641 0135899999999 9 999999999999999999999999 4 555552
Q ss_pred cceee-EEcCCC----ccchhHHHHHHhh--------------CCC-h--hhhhhhhhHHHHHHHHHHHHHH---HHhee
Q 039839 76 QTTKG-IWIAKC----VGIEPFTIAMDLE--------------GSD-S--RERGEDDTTFEKQSALFALAIA---DIVLI 130 (825)
Q Consensus 76 q~~~G-~~~~~~----t~~enl~l~ld~~--------------g~~-~--~er~e~~~~~ErQRv~iArALa---~VLLL 130 (825)
+..+| +++|.. ++.+|+.+..... |.. . .........+||||++|||||+ ++|||
T Consensus 73 ~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 73 YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred hhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 12578 887753 6678887654321 222 1 1112233455999999999999 99999
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC-cEEEEeCCeEEEecCcccccC
Q 039839 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE-PILREDIQKIWDAVPKPQTLK 203 (825)
Q Consensus 131 DEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d-rvlvl~~GkI~~~g~~~e~l~ 203 (825)
||||++||++. +..+++.++++.+ |+|+||||++.+. .+|| ++++|++|+++..|++++++.
T Consensus 153 DEPts~LD~~~------~~~l~~~L~~~~~----tviivtHd~~~~~-~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 153 DEPFENVDAAR------RHVISRYIKEYGK----EGILVTHELDMLN-LYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp ECTTTTCCHHH------HHHHHHHHHHSCS----EEEEEESCGGGGG-GCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred ECCccccCHHH------HHHHHHHHHHhcC----cEEEEEcCHHHHH-HhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999 9999999998843 9999999998763 5899 999999999999998877654
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=1.8e-27 Score=245.55 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=131.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----------cc
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----------QT 77 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----------q~ 77 (825)
.+|+++|+++.|+. .+++++++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+. ..
T Consensus 9 ~~l~~~~ls~~y~~----~il~~vsl~i--~~Ge~~~iiG~NGsGKSTLlk~l~Gl----~~p~~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK----PVLERITMTI--EKGNVVNFHGPNGIGKTTLLKTISTY----LKPLKGEIIYNGVPITKVKG 78 (214)
T ss_dssp CEEEEEEEEEESSS----EEEEEEEEEE--ETTCCEEEECCTTSSHHHHHHHHTTS----SCCSEEEEEETTEEGGGGGG
T ss_pred ceEEEEEEEEEeCC----eEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCeEEEECCEEhhhhcC
Confidence 47999999999964 5899999999 99999999999999999999999999 45555652 23
Q ss_pred eeeEEcCC------CccchhHHHHHHhhCC----------------Ch-hhhhhhhhHHHHHHHHHHHHHH---HHheec
Q 039839 78 TKGIWIAK------CVGIEPFTIAMDLEGS----------------DS-RERGEDDTTFEKQSALFALAIA---DIVLIN 131 (825)
Q Consensus 78 ~~G~~~~~------~t~~enl~l~ld~~g~----------------~~-~er~e~~~~~ErQRv~iArALa---~VLLLD 131 (825)
.+||++|. .++.+|+.+.....+. .. .........+||||++||+||+ ++||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 57888765 3567888776543321 11 1111123445999999999999 999999
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeE
Q 039839 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKI 192 (825)
Q Consensus 132 EPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI 192 (825)
|||++||+.. +..+++.++++.++ |+|||+||||++.+. .+||+++++. |+|
T Consensus 159 EPts~LD~~~------~~~l~~~l~~~~~~-g~tiiivtHd~~~~~-~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDS------KHKVLKSILEILKE-KGIVIISSREELSYC-DVNENLHKYS-TKI 210 (214)
T ss_dssp STTTTSCTTT------HHHHHHHHHHHHHH-HSEEEEEESSCCTTS-SEEEEGGGGB-C--
T ss_pred CCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCEEEEeC-Ccc
Confidence 9999999999 99999999999765 899999999998774 5788887654 665
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.4e-27 Score=263.55 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=140.0
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
..|+++|+++.|+... ..+++++++.+ .+|++++|+||||||||||||+|+|+.. .+|+
T Consensus 18 ~~i~~~~l~~~y~~~~-~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGG-NAILENISFSI--SPGQRVGLLGRTGSGKSTLLSAFLRLLN-----TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSSSS-CCSEEEEEEEE--CTTCEEEEEESTTSSHHHHHHHHHTCSE-----EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecCCC-eEEeeceeEEE--cCCCEEEEECCCCChHHHHHHHHhCCCC-----CCeEEEECCEECCcCCh
Confidence 3699999999994211 57899999999 9999999999999999999999999842 3343
Q ss_pred --ccceeeEEcCCC-----ccchhHHHH-----------HHhhCCChhh--h-----------hhhhhHHHHHHHHHHHH
Q 039839 75 --SQTTKGIWIAKC-----VGIEPFTIA-----------MDLEGSDSRE--R-----------GEDDTTFEKQSALFALA 123 (825)
Q Consensus 75 --~q~~~G~~~~~~-----t~~enl~l~-----------ld~~g~~~~e--r-----------~e~~~~~ErQRv~iArA 123 (825)
.+..+|+++|.. ++.+|+.+. ++..+..... . +.....+|||||+||||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 124689998864 345555321 1122221100 0 01156679999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
|+ +||||||||++||+.. +..+.+.|+++.. ++|+|+||||++... .||+|++|++|+|+..|++.+
T Consensus 170 L~~~P~lLLLDEPts~LD~~~------~~~l~~~l~~~~~--~~tvi~vtHd~e~~~--~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVT------YQIIRRTLKQAFA--DCTVILCEARIEAML--ECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHH------HHHHHHHHHTTTT--TSCEEEECSSSGGGT--TCSEEEEEETTEEEEESSHHH
T ss_pred HhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEEcCHHHHH--hCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999988 9999999988743 799999999987554 699999999999999999888
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 240 l~~~ 243 (390)
T 3gd7_A 240 LYHY 243 (390)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7653
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.93 E-value=5.3e-26 Score=266.23 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=143.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|++.. +.+++++++.+ .+|++++|+||||||||||+|+|+|+ .+|.+|+.
T Consensus 341 ~i~~~~v~~~y~~~~-~~~l~~i~l~i--~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKE-KPALSHVSFSI--PQGKTVALVGRSGSGKSTIANLFTRF----YDVDSGSICLDGHDVRDYKLT 413 (582)
T ss_pred eEEEEEEEEEcCCCC-ccccccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCCCEEEECCEEhhhCCHH
Confidence 699999999996421 46899999999 99999999999999999999999999 55666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhhCCChh---------------------------hhhhhhhHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLEGSDSR---------------------------ERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~---------------------------er~e~~~~~ErQRv~iA 121 (825)
+..+|+++|.. ++.+|+.++.. .+.+.. +++.....+||||++||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFNDTIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred HHhcCeEEEcCCCccccccHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 23578887754 55677766430 011110 11123345599999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||++ ++|||||||++||++. .+.+.+.++++.+ |+|+|+||||++.+. .||++++|++|+|++.|++
T Consensus 493 ral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~tvi~itH~~~~~~--~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTES------ERAIQAALDELQK--NKTVLVIAHRLSTIE--QADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHH--hCCEEEEEECCEEEEECCH
Confidence 9999 9999999999999999 9999999999863 899999999998775 6999999999999999988
Q ss_pred ccccC
Q 039839 199 PQTLK 203 (825)
Q Consensus 199 ~e~l~ 203 (825)
++++.
T Consensus 563 ~~l~~ 567 (582)
T 3b5x_A 563 ADLLA 567 (582)
T ss_pred HHHHh
Confidence 77654
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.93 E-value=5.6e-26 Score=266.70 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=141.5
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--------------
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------- 75 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------- 75 (825)
|+++|++++|++..-..+++++++.+ .+|++++|+||||||||||+|+|+|+ .+|.+|+.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i--~~G~~~~ivG~sGsGKSTLl~~l~g~----~~p~~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSI--PSGSVTALVGPSGSGKSTVLSLLLRL----YDPASGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEE--CTTCEEEEECCTTSSSTHHHHHHTTS----SCCSEEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCcEEEECCEEhhhCCHHH
Confidence 99999999996521146899999999 99999999999999999999999999 55666651
Q ss_pred -cceeeEEcCCC-----ccchhHHHHHHhh-CCChhh---------------------------hhhhhhHHHHHHHHHH
Q 039839 76 -QTTKGIWIAKC-----VGIEPFTIAMDLE-GSDSRE---------------------------RGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 -q~~~G~~~~~~-----t~~enl~l~ld~~-g~~~~e---------------------------r~e~~~~~ErQRv~iA 121 (825)
+..+|+++|.. ++.+|+.++.... +.+..+ ++.....+||||++||
T Consensus 416 ~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 416 LRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp HHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred HHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 23578887754 5577877643210 011110 1122345599999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||++ ++|||||||++||++. .+.+.+.++++.+ |+|+|+||||++.+. .||++++|++|+|++.|++
T Consensus 496 ral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~tvi~itH~~~~~~--~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 496 RALLKNPKILLLDEATSALDAEN------EYLVQEALDRLMD--GRTVLVIAHRLSTIK--NANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHCCSEEEEECCCSSCCHHH------HHHHHHHHHHHHT--TSEEEEECCCHHHHH--HSSEEEEEETTEEEEEECS
T ss_pred HHHHcCCCEEEEECcccCCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHH--cCCEEEEEECCEEEEECCH
Confidence 9999 9999999999999999 9999999999975 789999999998765 6999999999999999998
Q ss_pred ccccC
Q 039839 199 PQTLK 203 (825)
Q Consensus 199 ~e~l~ 203 (825)
++++.
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHh
Confidence 88764
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.93 E-value=4.7e-26 Score=266.57 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=144.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+... ..+++++++.+ .+|++++|+||||||||||+|+|+|+ ++|.+|+.
T Consensus 339 ~i~~~~v~~~y~~~~-~~~l~~isl~i--~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE-APILKDINLSI--EKGETVAFVGMSGGGKSTLINLIPRF----YDVTSGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CEEEEEEEECSCSSS-CCSEEEEEEEE--CTTCEEEEECSTTSSHHHHHTTTTTS----SCCSEEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCCCC-CcceeeeEEEE--CCCCEEEEECCCCChHHHHHHHHhcC----CCCCCcEEEECCEEhhhCCHH
Confidence 599999999996521 56999999999 99999999999999999999999999 56666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHh------------hCC-------C------hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDL------------EGS-------D------SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~------------~g~-------~------~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|.. ++.+|+.++... .+. + -.+++.....+||||++||||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 23578887754 556777653210 010 0 012223445669999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. .+.+.+.+.++.+ ++|+|+||||++.+. .||++++|++|+|++.|++++
T Consensus 492 l~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~t~i~itH~l~~~~--~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLES------ESIIQEALDVLSK--DRTTLIVAHRLSTIT--HADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHH------HHHHHHHHHHHTT--TSEEEEECSSGGGTT--TCSEEEEEETTEEEEEECHHH
T ss_pred HHcCCCEEEEECccccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHH--cCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999998 9999999998854 789999999998875 699999999999999999887
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 562 l~~~ 565 (578)
T 4a82_A 562 LIAK 565 (578)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7643
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=3.7e-26 Score=268.41 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=144.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+.. ..+++++++.+ .+|++++|+||||||||||+|+|+|+ .+|.+|+.
T Consensus 354 ~i~~~~v~~~y~~~--~~~l~~isl~i--~~G~~~~ivG~sGsGKSTll~~l~g~----~~p~~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK--KPVLKDITFHI--KPGQKVALVGPTGSGKTTIVNLLMRF----YDVDRGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CEEEEEEECCSSSS--SCSCCSEEEEC--CTTCEEEEECCTTSSTTHHHHHHTTS----SCCSEEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEECCCC--CccccceEEEE--cCCCEEEEECCCCCcHHHHHHHHhcC----cCCCCeEEEECCEEhhhCCHH
Confidence 59999999999752 56899999999 99999999999999999999999999 56666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhh------------CC-------C------hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLE------------GS-------D------SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~------------g~-------~------~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|+. ++.+|+.+..... +. + -.+++.....+||||++||||
T Consensus 426 ~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp HHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 23588887754 5577776532100 00 0 001122345569999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. .+.+.+.+.++.+ |+|+|+||||++.+. .||+|++|++|+|++.|++++
T Consensus 506 l~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~t~i~itH~l~~~~--~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKT------EKSIQAAMWKLME--GKTSIIIAHRLNTIK--NADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHH------HHHHHHHHHHHHT--TSEEEEESCCTTHHH--HCSEEEEECSSSEEECSCHHH
T ss_pred HhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHH--cCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999999 9999999999863 899999999998875 699999999999999999887
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 576 l~~~ 579 (598)
T 3qf4_B 576 LIQK 579 (598)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 6543
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.92 E-value=7.2e-26 Score=265.11 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=143.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
+|+++|++++|++.. +.+++++++.+ .+|++++|+||||||||||+|+|+|+ .+|.+|+.
T Consensus 341 ~i~~~~v~~~y~~~~-~~~l~~v~~~i--~~G~~~~ivG~sGsGKSTLl~~l~g~----~~p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPGRE-VPALRNINLKI--PAGKTVALVGRSGSGKSTIASLITRF----YDIDEGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSSSS-CCSEEEEEEEE--CTTCEEEEEECTTSSHHHHHHHHTTT----TCCSEEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCCCC-CccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhhc----cCCCCCeEEECCEEccccCHH
Confidence 699999999997421 46899999999 99999999999999999999999999 55666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhhCCChh---------------------------hhhhhhhHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLEGSDSR---------------------------ERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~g~~~~---------------------------er~e~~~~~ErQRv~iA 121 (825)
+..+|+++|.. ++.+|+.++.. .+.+.. +++.....+||||++||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHhhCeEEccCCcCCCCCHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 23578887754 56778776430 111111 01123345599999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
||++ ++|||||||++||++. .+.+.+.++++.+ |+|+|+||||++.+. .||++++|++|+|++.|++
T Consensus 493 ral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~tvi~itH~~~~~~--~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTES------ERAIQAALDELQK--NRTSLVIAHRLSTIE--QADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHH------HHHHHHHHHHHHT--TSEEEEECSCGGGTT--TCSEEEEEETTEEEEEECH
T ss_pred HHHHhCCCEEEEECccccCCHHH------HHHHHHHHHHHhC--CCEEEEEeccHHHHH--hCCEEEEEECCEEEEecCH
Confidence 9999 9999999999999999 9999999999964 899999999998775 6999999999999999987
Q ss_pred ccccC
Q 039839 199 PQTLK 203 (825)
Q Consensus 199 ~e~l~ 203 (825)
++++.
T Consensus 563 ~~l~~ 567 (582)
T 3b60_A 563 SELLA 567 (582)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=4.3e-26 Score=245.48 Aligned_cols=173 Identities=12% Similarity=0.074 Sum_probs=126.1
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK 85 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~ 85 (825)
.+|+++|+++.+ ..+++++++.+ .+|++++|+||||||||||||+|+|+ +.|.+|+. ...+||++|.
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i--~~Ge~~~i~G~NGsGKSTLlk~l~Gl----~~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKI--ERGQLLAVAGSTGAGKTSLLMMIMGE----LEPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp -----------C-----CCSEEEEEEEE--CTTCEEEEEESTTSSHHHHHHHHTTS----SCEEEEEEECCSCEEEECSS
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcC----CCCCCcEEEECCEEEEEeCC
Confidence 468999999853 46899999999 99999999999999999999999999 56777773 2357888765
Q ss_pred C-----ccchhHHHHHH-----------hhCCChh-------------hhhhhhhHHHHHHHHHHHHHH---HHheecCC
Q 039839 86 C-----VGIEPFTIAMD-----------LEGSDSR-------------ERGEDDTTFEKQSALFALAIA---DIVLINMW 133 (825)
Q Consensus 86 ~-----t~~enl~l~ld-----------~~g~~~~-------------er~e~~~~~ErQRv~iArALa---~VLLLDEP 133 (825)
. ++.+|+. ... ..+.... ........+||||++|||||+ ++||||||
T Consensus 108 ~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 108 SWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp CCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 3 4556664 210 0111100 001234556999999999999 99999999
Q ss_pred CCCCccccccCHHHHHHHHHHH-HHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccccc
Q 039839 134 CHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQTL 202 (825)
Q Consensus 134 tsgLD~Epta~~~~~~~V~elL-~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~l 202 (825)
|++||+.. +..+++.+ .++. + |+|||+||||++.+. .||++++|++|+++..|++++++
T Consensus 187 ts~LD~~~------~~~i~~~ll~~~~-~-~~tviivtHd~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 187 FGYLDVLT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK--KADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTCCHHH------HHHHHHHCCCCCT-T-TSEEEEECCCHHHHH--HSSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHH------HHHHHHHHHHHhh-C-CCEEEEEecCHHHHH--cCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999 99999864 4553 3 899999999997765 69999999999999999877654
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=5.1e-26 Score=266.76 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=143.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+... ..+++++++.+ .+|++++|+||||||||||+|+|+|+ ++|.+|+.
T Consensus 341 ~i~~~~v~~~y~~~~-~~~l~~isl~i--~~Ge~~~ivG~sGsGKSTll~~l~g~----~~~~~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 341 SVSFENVEFRYFENT-DPVLSGVNFSV--KPGSLVAVLGETGSGKSTLMNLIPRL----IDPERGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CEEEEEEEECSSSSS-CCSEEEEEEEE--CTTCEEEEECSSSSSHHHHHHTTTTS----SCCSEEEEEESSSBGGGBCHH
T ss_pred cEEEEEEEEEcCCCC-CcceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----ccCCCcEEEECCEEcccCCHH
Confidence 599999999996421 57999999999 99999999999999999999999999 56666651
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhh------------CC-------C------hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLE------------GS-------D------SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~------------g~-------~------~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|+. ++.+|+.+..... +. + -.+++.....+||||++||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp HHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred HHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 24588888764 4466765532100 00 0 011122334559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ ++|||||||++||++. .+.+++.++++. + |+|+|+||||++.+. .||+|++|++|+|++.|++++
T Consensus 494 l~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~-~-~~tvi~itH~l~~~~--~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPIT------EKRILDGLKRYT-K-GCTTFIITQKIPTAL--LADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHHH------HHHHHHHHHHHS-T-TCEEEEEESCHHHHT--TSSEEEEEETTEEEEEECHHH
T ss_pred HHcCCCEEEEECCcccCCHHH------HHHHHHHHHHhC-C-CCEEEEEecChHHHH--hCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999999 999999999985 3 899999999998775 799999999999999999887
Q ss_pred ccC
Q 039839 201 TLK 203 (825)
Q Consensus 201 ~l~ 203 (825)
+++
T Consensus 564 l~~ 566 (587)
T 3qf4_A 564 LLE 566 (587)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=6.2e-25 Score=278.21 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=149.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+.++..++|+++++.+ ++|+.+||+||+|||||||+++|+|+ ++|.+|+.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I--~~Ge~vaIVG~SGsGKSTL~~lL~rl----~~p~~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSV--EPGQTLALVGPSGCGKSTVVALLERF----YDTLGGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEE--CTTCEEEEECSTTSSTTSHHHHHTTS----SCCSSSEEEETTEETTTBCHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEE--CCCCEEEEECCCCChHHHHHHHHhcC----ccCCCCEEEECCEEhhhCCHH
Confidence 599999999996533357999999999 99999999999999999999999999 67777871
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhhCCCh---------------------------hhhhhhhhHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS---------------------------RERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~g~~~---------------------------~er~e~~~~~ErQRv~iA 121 (825)
+..+|+++|.+ |+.+|+.++++....+. .+++.....+||||++||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp HHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred HHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 45689998875 44778766543211111 122333445599999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
|||. +||||||||++||.+. -+.|.+.|+++++ ++|+|+|+|.++.+. .||+|++|++|+|++.|++
T Consensus 1230 RAllr~~~ILiLDEaTSaLD~~t------E~~Iq~~l~~~~~--~~TvI~IAHRLsTi~--~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1230 RALVRNPKILLLDEATSALDTES------EKVVQEALDRARE--GRTCIVIAHRLNTVM--NADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp HHHHSCCSEEEEESCCCSTTSHH------HHHHHHHHTTTSS--SSEEEEECSSSSTTT--TCSEEEEESSSSEEEEECH
T ss_pred HHHHhCCCEEEEeCccccCCHHH------HHHHHHHHHHHcC--CCEEEEeccCHHHHH--hCCEEEEEECCEEEEECCH
Confidence 9999 9999999999999999 9999999998875 799999999998775 7999999999999999999
Q ss_pred ccccCCc
Q 039839 199 PQTLKNT 205 (825)
Q Consensus 199 ~e~l~~~ 205 (825)
.++++..
T Consensus 1300 ~eLl~~~ 1306 (1321)
T 4f4c_A 1300 TQLMSEK 1306 (1321)
T ss_dssp HHHHHCC
T ss_pred HHHHhCC
Confidence 8887543
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=3.2e-24 Score=271.08 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=143.6
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|+++.|+......+++++++.+ .+||++||+||||||||||+++|+|+ .+|.+|+.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i--~~Ge~v~ivG~sGsGKSTl~~~l~g~----~~p~~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEV--KKGQTLALVGSSGCGKSTVVQLLERF----YDPMAGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEE--CSSSEEEEECSSSTTHHHHHHHHTTS----SCCSEEEEESSSSCTTSSCHH
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcC----cCCCCCEEEECCEEcccCCHH
Confidence 599999999997532246899999999 99999999999999999999999999 45655551
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhhCCCh---------------------------hhhhhhhhHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLEGSDS---------------------------RERGEDDTTFEKQSALFA 121 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~g~~~---------------------------~er~e~~~~~ErQRv~iA 121 (825)
+..+|+++|+. ++.+|+.+.......+. .+++.....+||||++||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp HHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred HHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 34588988765 44666654311000000 112233455699999999
Q ss_pred HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCc
Q 039839 122 LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPK 198 (825)
Q Consensus 122 rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~ 198 (825)
|||+ +||||||||++||.+. .+.|.+.+.++. + |+|+|+||||++.+. .||+|++|++|+|++.|++
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~------~~~i~~~l~~~~-~-~~tvi~isH~l~~i~--~~dri~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTES------EKVVQEALDKAR-E-GRTCIVIAHRLSTIQ--NADLIVVIQNGKVKEHGTH 1253 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHH------HHHHHHHHHHHS-S-SSCEEEECSCTTGGG--SCSEEEEEETBEEEEEECH
T ss_pred HHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhC-C-CCEEEEEecCHHHHH--cCCEEEEEECCEEEEECCH
Confidence 9999 9999999999999999 999999998864 3 899999999998875 6999999999999999998
Q ss_pred ccccCC
Q 039839 199 PQTLKN 204 (825)
Q Consensus 199 ~e~l~~ 204 (825)
++++..
T Consensus 1254 ~~l~~~ 1259 (1284)
T 3g5u_A 1254 QQLLAQ 1259 (1284)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 877643
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=2.6e-24 Score=249.82 Aligned_cols=179 Identities=16% Similarity=0.071 Sum_probs=138.4
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK 85 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~ 85 (825)
.+++++|+++.|+. ..+..+++.+ .+|+++||+||||||||||||+|+|+ ..|.+|+. ...+||++|.
T Consensus 286 ~~l~~~~l~~~~~~----~~l~~~~~~i--~~Ge~~~i~G~NGsGKSTLlk~l~Gl----~~p~~G~i~~~~~i~~v~Q~ 355 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----FRLEVEPGEI--KKGEVIGIVGPNGIGKTTFVKMLAGV----EEPTEGKIEWDLTVAYKPQY 355 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEE--ETTCEEEEECCTTSSHHHHHHHHHTS----SCCSBCCCCCCCCEEEECSS
T ss_pred eEEEEeeEEEEECC----EEEEeCcccc--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCeEEEECceEEEEecC
Confidence 47999999999965 2467788889 99999999999999999999999999 56677764 3457888775
Q ss_pred C------ccchhHHHH-HHh-------------hCCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccc
Q 039839 86 C------VGIEPFTIA-MDL-------------EGSDS--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGRE 140 (825)
Q Consensus 86 ~------t~~enl~l~-ld~-------------~g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~E 140 (825)
. ++.+++... ... .|... .........+|||||+||+||+ +||||||||++||+.
T Consensus 356 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 356 IKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 4 333443322 000 01110 0011123445999999999999 999999999999999
Q ss_pred cccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC--CeEEEecCcccccC
Q 039839 141 QAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI--QKIWDAVPKPQTLK 203 (825)
Q Consensus 141 pta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~--GkI~~~g~~~e~l~ 203 (825)
. +..++++|+++.++.|.|||+||||++++. .+||++++|++ |++...|++.+++.
T Consensus 436 ~------~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~-~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 436 Q------RLAVSRAIRHLMEKNEKTALVVEHDVLMID-YVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp H------HHHHHHHHHHHHHHHTCEEEEECSCHHHHH-HHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9 999999999997545899999999998773 58999999985 78888898877653
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=3.6e-24 Score=251.67 Aligned_cols=179 Identities=17% Similarity=0.078 Sum_probs=139.6
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK 85 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~ 85 (825)
.++++.|+++.|+. ..+..+++.+ .+|++++|+||||||||||||+|+|+ ..|.+|+. ...+||++|.
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v--~~Gei~~i~G~NGsGKSTLlk~l~Gl----~~p~~G~I~~~~~i~~v~Q~ 425 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEI--RKGEVIGIVGPNGIGKTTFVKMLAGV----EEPTEGKVEWDLTVAYKPQY 425 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEE--ETTCEEEEECCTTSSHHHHHHHHHTS----SCCSBSCCCCCCCEEEECSS
T ss_pred eEEEEeceEEEecc----eEEEeccccc--CCCCEEEEECCCCCCHHHHHHHHhcC----CCCCceEEEEeeEEEEEecC
Confidence 47999999999965 2467788889 99999999999999999999999999 56777764 3468888776
Q ss_pred C------ccchhHHHH-HH-------------hhCCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccc
Q 039839 86 C------VGIEPFTIA-MD-------------LEGSDS--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGRE 140 (825)
Q Consensus 86 ~------t~~enl~l~-ld-------------~~g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~E 140 (825)
. ++.+++... .. ..|... .........+|||||+||+||+ +||||||||++||++
T Consensus 426 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred ccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 4 334444332 00 012111 0011223445999999999999 999999999999999
Q ss_pred cccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC--CeEEEecCcccccC
Q 039839 141 QAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI--QKIWDAVPKPQTLK 203 (825)
Q Consensus 141 pta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~--GkI~~~g~~~e~l~ 203 (825)
. +..++++|+++.++.|.|+|+||||++.+. .+||++++|++ |++...|++.+++.
T Consensus 506 ~------~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~-~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 506 Q------RLAVSRAIRHLMEKNEKTALVVEHDVLMID-YVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp H------HHHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9 999999999997545899999999998773 58999999985 78888898877654
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=6.6e-24 Score=246.25 Aligned_cols=176 Identities=15% Similarity=0.058 Sum_probs=132.3
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---cceeeEEcC
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---QTTKGIWIA 84 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---q~~~G~~~~ 84 (825)
.++++.|+++.|+. ..+...++.+ .+|+++||+||||||||||||+|+|+ ..|.+|+. ...++++++
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i--~~Gei~~i~G~nGsGKSTLl~~l~Gl----~~p~~G~i~~~~~~i~~~~q 337 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEA--KEGEIIGILGPNGIGKTTFARILVGE----ITADEGSVTPEKQILSYKPQ 337 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEE--ETTCEEEEECCTTSSHHHHHHHHTTS----SCCSBCCEESSCCCEEEECS
T ss_pred ceEEEcceEEEECC----EEEEeccceE--CCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCcEEEECCeeeEeech
Confidence 47899999999975 1345568889 99999999999999999999999999 56777763 234677655
Q ss_pred C------CccchhHHHHHHhh---------------CCCh--hhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCc
Q 039839 85 K------CVGIEPFTIAMDLE---------------GSDS--RERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIG 138 (825)
Q Consensus 85 ~------~t~~enl~l~ld~~---------------g~~~--~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD 138 (825)
. .++.+++.+..... |... .........+|||||+|||||+ +||||||||++||
T Consensus 338 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp SCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred hcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 3 24455555421100 0000 0011223445999999999999 9999999999999
Q ss_pred cccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC--CeEEEecCccc
Q 039839 139 REQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI--QKIWDAVPKPQ 200 (825)
Q Consensus 139 ~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~--GkI~~~g~~~e 200 (825)
+.. +..++++|+++.++.|+|||+||||++++. .+||+|++|+. |.+...+++..
T Consensus 418 ~~~------~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~-~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 418 VEE------RYIVAKAIKRVTRERKAVTFIIDHDLSIHD-YIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp HHH------HHHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEeCCcceeccCCChHH
Confidence 999 999999999998656999999999998874 58999999985 44544554433
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=1.8e-23 Score=265.00 Aligned_cols=180 Identities=15% Similarity=0.154 Sum_probs=148.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+...-.++++++|+.+ ++|+.++|+||+|||||||+++|.|+ ++|.+|+.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i--~~G~~vaivG~sGsGKSTll~ll~~~----~~~~~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRV--NAGQTVALVGSSGCGKSTIISLLLRY----YDVLKGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEE--CTTCEEEEEECSSSCHHHHHHHHTTS----SCCSEEEEEETTEETTTSCHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEee--cCCcEEEEEecCCCcHHHHHHHhccc----cccccCcccCCCccchhccHH
Confidence 599999999996533367999999999 99999999999999999999999999 77877762
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhh-----------------------CCC--hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLE-----------------------GSD--SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~-----------------------g~~--~~er~e~~~~~ErQRv~iArA 123 (825)
+..+||+.|.+ |+.+|+.++.... |.+ -.+++.....+||||++||||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred HHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 24688987764 5578887753210 000 012223334559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+. +||||||||++||.+. .+.+.+.+.++.+ |+|+|+|||++.... .||+|++|++|+|++.|+.++
T Consensus 569 l~~~~~IliLDE~tSaLD~~t------e~~i~~~l~~~~~--~~T~iiiaHrls~i~--~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAES------EGIVQQALDKAAK--GRTTIIIAHRLSTIR--NADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTT------HHHHHHHHHHHHT--TSEEEEECSCTTTTT--TCSEEEEEETTEEEEEECHHH
T ss_pred HccCCCEEEEecccccCCHHH------HHHHHHHHHHHhC--CCEEEEEcccHHHHH--hCCEEEEeeCCeeeccCCHHH
Confidence 99 9999999999999998 9999999999875 799999999998876 899999999999999999888
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
++..
T Consensus 639 L~~~ 642 (1321)
T 4f4c_A 639 LMAQ 642 (1321)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7654
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.88 E-value=1.1e-23 Score=266.26 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=145.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.|+++|++++|+......+++++++.+ .+|+++||+||||||||||+++|+|+ ++|.+|+.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i--~~G~~~~ivG~sGsGKSTl~~ll~g~----~~~~~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKV--KSGQTVALVGNSGCGKSTTVQLMQRL----YDPLDGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEE--CTTCEEEEECCSSSSHHHHHHHTTTS----SCCSEEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCC----CCCCCeEEEECCEEHHhCCHH
Confidence 599999999997532246999999999 99999999999999999999999999 56776762
Q ss_pred --cceeeEEcCCC-----ccchhHHHHHHhh------------CC-------C------hhhhhhhhhHHHHHHHHHHHH
Q 039839 76 --QTTKGIWIAKC-----VGIEPFTIAMDLE------------GS-------D------SRERGEDDTTFEKQSALFALA 123 (825)
Q Consensus 76 --q~~~G~~~~~~-----t~~enl~l~ld~~------------g~-------~------~~er~e~~~~~ErQRv~iArA 123 (825)
+..+|+++|.+ ++.+|+.++.... +. + -.+++.....+||||++||||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARa 540 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540 (1284)
T ss_dssp HHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHH
T ss_pred HHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHH
Confidence 23588987764 5678887753210 00 0 011122334559999999999
Q ss_pred HH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCccc
Q 039839 124 IA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 124 La---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
++ +||||||||++||++. .+.+.+.+.++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 541 l~~~p~iliLDEpts~LD~~~------~~~i~~~l~~~~~--~~t~i~itH~l~~i~--~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 541 LVRNPKILLLDEATSALDTES------EAVVQAALDKARE--GRTTIVIAHRLSTVR--NADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHCCSEEEEESTTCSSCHHH------HHHHHHHHHHHHT--TSEEEEECSCHHHHT--TCSEEEECSSSCCCCEECHHH
T ss_pred HhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHH--cCCEEEEEECCEEEEECCHHH
Confidence 99 9999999999999998 8899999988764 899999999998775 599999999999999999887
Q ss_pred ccCC
Q 039839 201 TLKN 204 (825)
Q Consensus 201 ~l~~ 204 (825)
.+..
T Consensus 611 l~~~ 614 (1284)
T 3g5u_A 611 LMRE 614 (1284)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7653
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1e-23 Score=247.59 Aligned_cols=175 Identities=19% Similarity=0.133 Sum_probs=130.6
Q ss_pred EEeEEEecCccccccccccccccccCCC-----cEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--cceeeEEcCC
Q 039839 13 IDGNGEFNVDGLENFVRTTKLNHCGLSY-----AVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS--QTTKGIWIAK 85 (825)
Q Consensus 13 ~nlsk~y~~~~l~~il~~isl~i~g~~G-----eivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~--q~~~G~~~~~ 85 (825)
.++.+.|+. ...++.++++.+ .+| |+++|+||||||||||||+|+|+ ..|.+|+. ...++++++.
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v--~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl----~~p~~G~~~~~~~i~~~~q~ 421 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNV--EEGEFSDSEILVMMGENGTGKTTLIKLLAGA----LKPDEGQDIPKLNVSMKPQK 421 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEE--CCEECCTTCEEEEESCTTSSHHHHHHHHHTS----SCCSBCCCCCSCCEEEECSS
T ss_pred cceeEEecC--cccccCceEEEE--ecCccccceEEEEECCCCCcHHHHHHHHhcC----CCCCCCcCccCCcEEEeccc
Confidence 345566643 134677788887 666 88999999999999999999999 56667752 2346777664
Q ss_pred C------ccchhHHHHHHhhCC-Chhhh-----------------hhhhhHHHHHHHHHHHHHH---HHheecCCCCCCc
Q 039839 86 C------VGIEPFTIAMDLEGS-DSRER-----------------GEDDTTFEKQSALFALAIA---DIVLINMWCHDIG 138 (825)
Q Consensus 86 ~------t~~enl~l~ld~~g~-~~~er-----------------~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD 138 (825)
. ++.+++... ..+. ..... ......+|||||+|||||+ +||||||||+|||
T Consensus 422 ~~~~~~~tv~e~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD 499 (608)
T 3j16_B 422 IAPKFPGTVRQLFFKK--IRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499 (608)
T ss_dssp CCCCCCSBHHHHHHHH--CSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCC
T ss_pred ccccCCccHHHHHHHH--hhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 3 233333211 1111 00111 1123445999999999999 9999999999999
Q ss_pred cccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC--CeEEEecCcccccCC
Q 039839 139 REQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI--QKIWDAVPKPQTLKN 204 (825)
Q Consensus 139 ~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~--GkI~~~g~~~e~l~~ 204 (825)
+.. +..++++|+++.++.|+|||+||||++++. .+|||+++|++ |+++..|+|.+++..
T Consensus 500 ~~~------~~~i~~ll~~l~~~~g~tviivtHdl~~~~-~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 500 SEQ------RIICSKVIRRFILHNKKTAFIVEHDFIMAT-YLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHH------HHHHHHHHHHHHHHHTCEEEEECSCHHHHH-HHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999 999999999987545899999999998873 57999999986 899999998887654
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=1.6e-23 Score=249.01 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=113.2
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHH---------------------HHHHhcccccCCcCCCc---------
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLM---------------------NHLFHTNFREMDAFRGR--------- 74 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLL---------------------n~L~Gl~~~~~~~~~G~--------- 74 (825)
..+++++++.+ .+|+++||+||||||||||+ +++.|+..+..+...|.
T Consensus 31 ~~~L~~vsl~i--~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 31 AHNLKNIDVEI--PRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp STTCCSEEEEE--ETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSC
T ss_pred ccceeccEEEE--CCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCc
Confidence 56899999999 99999999999999999998 77777754432211110
Q ss_pred -----ccceeeEEc-------------------------CCCccchhHHHHHH--------------------------h
Q 039839 75 -----SQTTKGIWI-------------------------AKCVGIEPFTIAMD--------------------------L 98 (825)
Q Consensus 75 -----~q~~~G~~~-------------------------~~~t~~enl~l~ld--------------------------~ 98 (825)
....+|+++ ...++.+|+.+... .
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 011122211 12345566554211 1
Q ss_pred hCCCh---hhhhhhhhHHHHHHHHHHHHHH---H--HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEe
Q 039839 99 EGSDS---RERGEDDTTFEKQSALFALAIA---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVI 170 (825)
Q Consensus 99 ~g~~~---~er~e~~~~~ErQRv~iArALa---~--VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VT 170 (825)
.|... ..........|||||+|||||+ + ||||||||++||+.. +..++++++++.++ |+|||+||
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~------~~~l~~~l~~l~~~-g~tvi~vt 261 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD------NDRLIATLKSMRDL-GNTLIVVE 261 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHHT-TCEEEEEC
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHc-CCEEEEEe
Confidence 11110 1112234556999999999999 5 999999999999999 99999999999875 99999999
Q ss_pred cCCCCccccccCcEEEE------eCCeEEEecCcccccCC
Q 039839 171 RDKTKTPLEYLEPILRE------DIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 171 HDl~~a~l~~~drvlvl------~~GkI~~~g~~~e~l~~ 204 (825)
||++.+. .||++++| ++|+++..|+++++..+
T Consensus 262 Hd~~~~~--~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 262 HDEDTML--AADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp CCHHHHH--HCSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred CCHHHHh--hCCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 9998764 69999999 89999999998776543
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=1.4e-22 Score=238.12 Aligned_cols=165 Identities=15% Similarity=0.031 Sum_probs=122.0
Q ss_pred eEEE--------EEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----
Q 039839 9 CMQL--------IDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----- 75 (825)
Q Consensus 9 ~Lel--------~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----- 75 (825)
+|++ +|++++|+.. ..++.+++ .+ .+|++++|+||||||||||||+|+|+.. |..|+.
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i--~~Ge~~~LiG~NGsGKSTLlkiL~Gll~----p~~G~~~~~~~ 153 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IV--KDGMVVGIVGPNGTGKTTAVKILAGQLI----PNLCEDNDSWD 153 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CC--CTTSEEEEECCTTSSHHHHHHHHTTSSC----CCTTTTCCCHH
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CC--CCCCEEEEECCCCChHHHHHHHHhCCCC----CCCCccccccc
Confidence 5888 7788999752 24788999 88 9999999999999999999999999954 444431
Q ss_pred ---------------------cceeeEEcCCC---------ccchhHH---------HHHHhhCCChh--hhhhhhhHHH
Q 039839 76 ---------------------QTTKGIWIAKC---------VGIEPFT---------IAMDLEGSDSR--ERGEDDTTFE 114 (825)
Q Consensus 76 ---------------------q~~~G~~~~~~---------t~~enl~---------l~ld~~g~~~~--er~e~~~~~E 114 (825)
...+++.++.. ++.+++. -.++..|.... ........+|
T Consensus 154 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGe 233 (607)
T 3bk7_A 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGE 233 (607)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHH
T ss_pred hhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHH
Confidence 01234444321 2222221 11222233211 1122345569
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
||||+||+||+ +||||||||++||+.. +..++++|+++.++ |+|||+||||++.+. .+||++++|+++
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~------~~~l~~~L~~l~~~-g~tvIivsHdl~~~~-~~adri~vl~~~ 304 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQ------RLKVARVIRRLANE-GKAVLVVEHDLAVLD-YLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHH-HHCSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEecChHHHH-hhCCEEEEECCC
Confidence 99999999999 9999999999999999 99999999999875 999999999998763 579999999854
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=1.6e-22 Score=234.73 Aligned_cols=164 Identities=16% Similarity=0.035 Sum_probs=119.0
Q ss_pred EEE-EEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------
Q 039839 10 MQL-IDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------- 75 (825)
Q Consensus 10 Lel-~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------- 75 (825)
.++ +|++++|+.. ..++.+++ .+ .+|++++|+||||||||||||+|+|+.. |..|+.
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i--~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~----p~~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VV--KEGMVVGIVGPNGTGKSTAVKILAGQLI----PNLCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CC--CTTSEEEEECCTTSSHHHHHHHHHTSSC----CCTTTTCCSHHHHHHHTTT
T ss_pred hhHhcCcEEEECCc--cccccCcC-cC--CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCccCcchhhhHHhhCC
Confidence 455 5899999762 24788999 88 9999999999999999999999999953 444431
Q ss_pred -------------cceeeEEcCCC---------ccchhHH---------HHHHhhCCCh--hhhhhhhhHHHHHHHHHHH
Q 039839 76 -------------QTTKGIWIAKC---------VGIEPFT---------IAMDLEGSDS--RERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 76 -------------q~~~G~~~~~~---------t~~enl~---------l~ld~~g~~~--~er~e~~~~~ErQRv~iAr 122 (825)
...+++.++.. ++.+++. -.++..|... .........+|||||+||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAr 171 (538)
T 1yqt_A 92 NELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAA 171 (538)
T ss_dssp STHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHH
Confidence 01234444431 1222221 1122223321 1112234556999999999
Q ss_pred HHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 123 AIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
||+ +||||||||++||+.. +..++++|+++.++ |+|||+||||++.+. .+||++++|++|
T Consensus 172 aL~~~P~lLlLDEPTs~LD~~~------~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~-~~~dri~vl~~~ 234 (538)
T 1yqt_A 172 ALLRNATFYFFDEPSSYLDIRQ------RLNAARAIRRLSEE-GKSVLVVEHDLAVLD-YLSDIIHVVYGE 234 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHH-HHCSEEEEEEEE
T ss_pred HHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCEEEEEcCc
Confidence 999 9999999999999999 99999999999875 999999999998773 579999999743
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=8e-22 Score=240.36 Aligned_cols=175 Identities=13% Similarity=0.015 Sum_probs=130.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC---
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK--- 85 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~--- 85 (825)
.|...|+++.|++ +.+++++++.+ .+|++++|+||||||||||||+|+|-.....+ ..+. ..++++.+.
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I--~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~-~~~~--~~~~~v~q~~~~ 506 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRL--KRARRYGICGPNGCGKSTLMRAIANGQVDGFP-TQEE--CRTVYVEHDIDG 506 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHHTCSTTCC-CTTT--SCEEETTCCCCC
T ss_pred eeEEeeEEEEECC---EEeEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-cccc--eeEEEEcccccc
Confidence 4677799999976 57899999999 99999999999999999999999852211011 1111 123444432
Q ss_pred ----CccchhHHH-----------HHHhhCCChh---hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccC
Q 039839 86 ----CVGIEPFTI-----------AMDLEGSDSR---ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAAN 144 (825)
Q Consensus 86 ----~t~~enl~l-----------~ld~~g~~~~---er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~ 144 (825)
.++.+++.+ .++..|.... ........+||||++||+||+ +||||||||++||+..
T Consensus 507 ~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~--- 583 (986)
T 2iw3_A 507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN--- 583 (986)
T ss_dssp CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH---
T ss_pred cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH---
Confidence 244555542 2223344211 112234566999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE-EecCccccc
Q 039839 145 KPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW-DAVPKPQTL 202 (825)
Q Consensus 145 ~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~-~~g~~~e~l 202 (825)
+..++++|++ . |+|+|+||||++.+. .+||++++|++|+++ ..|++.+.+
T Consensus 584 ---~~~l~~~L~~---~-g~tvIivSHdl~~l~-~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 584 ---VAWLVNYLNT---C-GITSITISHDSVFLD-NVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp ---HHHHHHHHHH---S-CSEEEEECSCHHHHH-HHCSEEEEEETTEEEEEESCHHHHH
T ss_pred ---HHHHHHHHHh---C-CCEEEEEECCHHHHH-HhCCEEEEEECCeeecCCCCHHHHH
Confidence 9999999988 3 899999999998774 589999999999997 578766544
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=2e-22 Score=245.69 Aligned_cols=77 Identities=8% Similarity=0.087 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEE
Q 039839 110 DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILR 186 (825)
Q Consensus 110 ~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlv 186 (825)
...+|||||+|||||+ +||||||||+|||++. +..+.+.++++ +.|||+||||++.+. .+||++++
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s------~~~L~~~L~~~----g~tVIiISHD~e~v~-~l~DrViv 970 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS------LGALSKALKEF----EGGVIIITHSAEFTK-NLTEEVWA 970 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHH------HHHHHHHHHSC----SSEEEEECSCHHHHT-TTCCEEEC
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH------HHHHHHHHHHh----CCEEEEEECCHHHHH-HhCCEEEE
Confidence 4556999999999999 9999999999999988 88888887654 569999999998763 58999999
Q ss_pred EeCCeEEEecC
Q 039839 187 EDIQKIWDAVP 197 (825)
Q Consensus 187 l~~GkI~~~g~ 197 (825)
|++|+++..|+
T Consensus 971 L~~G~Iv~~G~ 981 (986)
T 2iw3_A 971 VKDGRMTPSGH 981 (986)
T ss_dssp CBTTBCCC---
T ss_pred EECCEEEEeCC
Confidence 99999987663
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.4e-21 Score=223.92 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=112.2
Q ss_pred eEEEEEe--------EEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccc---
Q 039839 9 CMQLIDG--------NGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQT--- 77 (825)
Q Consensus 9 ~Lel~nl--------sk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~--- 77 (825)
.|+|+|+ +++|+.. ...+..++ .+ .+|+++||+||||||||||||+|+|+. .|..|+...
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~~--~~~l~~l~-~~--~~Gei~~LvGpNGaGKSTLLkiL~Gll----~P~~G~i~~~~~ 139 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSAN--SFKLHRLP-TP--RPGQVLGLVGTNGIGKSTALKILAGKQ----KPNLGRFDDPPE 139 (608)
T ss_dssp CEEEEEESSSSSTTEEEECSTT--SCEEECCC-CC--CTTSEEEEECCTTSSHHHHHHHHHTSS----CCCTTTTCCSSC
T ss_pred ceEEecCChhhcCCeEEEECCC--ceeecCCC-CC--CCCCEEEEECCCCChHHHHHHHHhcCC----CCCCceEecccc
Confidence 5778776 4555442 12333433 46 899999999999999999999999994 555555200
Q ss_pred -----------------------eeeEEcCCCccchhH--------------------------HHHHHhhCCChh--hh
Q 039839 78 -----------------------TKGIWIAKCVGIEPF--------------------------TIAMDLEGSDSR--ER 106 (825)
Q Consensus 78 -----------------------~~G~~~~~~t~~enl--------------------------~l~ld~~g~~~~--er 106 (825)
..+..+.. ...+++ .-.++..|.... ..
T Consensus 140 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~ 218 (608)
T 3j16_B 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKP-QYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD 218 (608)
T ss_dssp HHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC-CCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC
T ss_pred hhhhhheecChhhhhhhhHHHHHhhhhhhch-hhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC
Confidence 00000000 000110 001111122110 01
Q ss_pred hhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 107 GEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 107 ~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
......+|||||+||+||+ ++|||||||++||+.. +..++++++++.++ |.|||+||||++.+. .+||+
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~------~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~-~~~dr 290 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQ------RLNAAQIIRSLLAP-TKYVICVEHDLSVLD-YLSDF 290 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH------HHHHHHHHHGGGTT-TCEEEEECSCHHHHH-HHCSE
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-HhCCE
Confidence 1122344999999999999 9999999999999999 99999999999876 999999999998773 57999
Q ss_pred EEEEeCCe
Q 039839 184 ILREDIQK 191 (825)
Q Consensus 184 vlvl~~Gk 191 (825)
+++|+.|.
T Consensus 291 v~vl~~~~ 298 (608)
T 3j16_B 291 VCIIYGVP 298 (608)
T ss_dssp EEEEESCT
T ss_pred EEEEeCCc
Confidence 99998654
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.83 E-value=2.9e-21 Score=229.72 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC
Q 039839 109 DDTTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 109 ~~~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d 182 (825)
....+|||||+|||||+ +||||||||+|||+.. ...++++++++.++ |+|||+||||++.+. .||
T Consensus 543 ~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~------~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~--~~d 613 (670)
T 3ux8_A 543 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD------IARLLDVLHRLVDN-GDTVLVIEHNLDVIK--TAD 613 (670)
T ss_dssp GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT--TCS
T ss_pred hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH--hCC
Confidence 44566999999999998 2999999999999999 99999999999876 999999999998765 699
Q ss_pred cEEEE------eCCeEEEecCccccc
Q 039839 183 PILRE------DIQKIWDAVPKPQTL 202 (825)
Q Consensus 183 rvlvl------~~GkI~~~g~~~e~l 202 (825)
+|++| ++|+|++.|+++++.
T Consensus 614 ~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 614 YIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999 889999999987764
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=4.2e-20 Score=214.36 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=107.5
Q ss_pred EeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCccc-----------------
Q 039839 14 DGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQ----------------- 76 (825)
Q Consensus 14 nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q----------------- 76 (825)
+.+.+|+.+.++ +.++.. . .+|+++||+||||||||||||+|+|+. .|..|+..
T Consensus 4 ~~~~~~~~~~f~--l~~l~~-~--~~Gei~gLiGpNGaGKSTLlkiL~Gl~----~p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKVNGFK--LFGLPT-P--KNNTILGVLGKNGVGKTTVLKILAGEI----IPNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESSTTSCE--EECCCC-C--CTTEEEEEECCTTSSHHHHHHHHTTSS----CCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCceecCCCcee--ecCCCC-C--CCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCCccccccchhhHHhhcCCeeH
Confidence 457788764321 223332 2 689999999999999999999999994 44445320
Q ss_pred ---------ceeeEE--cCCC---------ccchhH---------HHHHHhhCCChh--hhhhhhhHHHHHHHHHHHHHH
Q 039839 77 ---------TTKGIW--IAKC---------VGIEPF---------TIAMDLEGSDSR--ERGEDDTTFEKQSALFALAIA 125 (825)
Q Consensus 77 ---------~~~G~~--~~~~---------t~~enl---------~l~ld~~g~~~~--er~e~~~~~ErQRv~iArALa 125 (825)
...++. ++.. ++.+++ .-.++..|.... .........|||||+||+||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 011111 1110 111111 011111222110 111223455999999999999
Q ss_pred ---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCC
Q 039839 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 126 ---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~G 190 (825)
+||||||||++||+.. +..++++|+++. + |+|||+||||++.+. .+||+++++++|
T Consensus 155 ~~p~illlDEPts~LD~~~------~~~l~~~l~~l~-~-g~tii~vsHdl~~~~-~~~d~i~vl~~~ 213 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRE------RMNMAKAIRELL-K-NKYVIVVDHDLIVLD-YLTDLIHIIYGE 213 (538)
T ss_dssp SCCSEEEEESTTTTCCHHH------HHHHHHHHHHHC-T-TSEEEEECSCHHHHH-HHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHH------HHHHHHHHHHHh-C-CCEEEEEEeChHHHH-hhCCEEEEecCC
Confidence 9999999999999999 999999999996 4 899999999998773 579999999854
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.3e-21 Score=216.82 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=114.3
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCC-c-------ccceee
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG-R-------SQTTKG 80 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G-~-------~q~~~G 80 (825)
|+++.|+++.|+ ++++.+ ..|++++|+||||||||||+|+|+|+. .+..| + .+..+|
T Consensus 118 mi~~~nl~~~y~---------~vsl~i--~~Ge~v~IvGpnGsGKSTLlr~L~Gl~----~p~~G~~pI~vdg~~~~~i~ 182 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSN--FEGPRVVIVGGSQTGKTSLSRTLCSYA----LKFNAYQPLYINLDPQQPIF 182 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHS--SSCCCEEEEESTTSSHHHHHHHHHHTT----HHHHCCCCEEEECCTTSCSS
T ss_pred hhhhhhhhehhh---------cCceEe--CCCCEEEEECCCCCCHHHHHHHHhCcc----cccCCceeEEEcCCccCCee
Confidence 445555555442 578888 899999999999999999999999994 34445 3 223355
Q ss_pred EEcCCC---------ccchhHHHHHHh----------------hCCChhhhhhhhhHHHHHHHHHHHH--HH---HH---
Q 039839 81 IWIAKC---------VGIEPFTIAMDL----------------EGSDSRERGEDDTTFEKQSALFALA--IA---DI--- 127 (825)
Q Consensus 81 ~~~~~~---------t~~enl~l~ld~----------------~g~~~~er~e~~~~~ErQRv~iArA--La---~V--- 127 (825)
++++.. ++.+|+ +.... .|.............||||++||+| |+ ++
T Consensus 183 ~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~s 261 (460)
T 2npi_A 183 TVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRS 261 (460)
T ss_dssp SCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHS
T ss_pred eeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcc
Confidence 554432 344455 43221 1211111123345569999999999 99 99
Q ss_pred -heecC-CCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC------CccccccCc-----EEEEe-CCeEE
Q 039839 128 -VLINM-WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT------KTPLEYLEP-----ILRED-IQKIW 193 (825)
Q Consensus 128 -LLLDE-PtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~------~a~l~~~dr-----vlvl~-~GkI~ 193 (825)
||||| ||++||+. ...+.+++.+ .+.|+|+||||+. .+ ..+||+ +++|+ +|+|+
T Consensus 262 GLlLDEpPts~LD~~-------~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~-~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 262 GCIVDTPSISQLDEN-------LAELHHIIEK----LNVNIMLVLCSETDPLWEKVK-KTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CEEEECCCGGGSCSS-------CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHH-HHHHHHHCGGGEEEECCCTTCC
T ss_pred eEEEeCCcccccChh-------HHHHHHHHHH----hCCCEEEEEccCchhhhHHHH-HHhcccccCCEEEEEeCCCcEE
Confidence 99999 99999976 3444555544 3778999999997 55 257999 99999 99999
Q ss_pred EecCcccc
Q 039839 194 DAVPKPQT 201 (825)
Q Consensus 194 ~~g~~~e~ 201 (825)
.+++.+.
T Consensus 330 -~g~~~~~ 336 (460)
T 2npi_A 330 -AVDDVYK 336 (460)
T ss_dssp -CCCHHHH
T ss_pred -ECCHHHH
Confidence 8876544
No 61
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=99.77 E-value=1.1e-18 Score=197.65 Aligned_cols=309 Identities=15% Similarity=0.153 Sum_probs=202.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc---------------cccCCcCCCcccceeeEEcCCC-------ccchhHHHH
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN---------------FREMDAFRGRSQTTKGIWIAKC-------VGIEPFTIA 95 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~---------------~~~~~~~~G~~q~~~G~~~~~~-------t~~enl~l~ 95 (825)
.+..+|+|+|+.++|||||||.|+|.. ........+....+.|+|+... ...+...++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 455689999999999999999999861 1111111133457889987532 122334566
Q ss_pred HHhhCCChhhhhhhhhHHHHHHHHHHHHH--HHHheecCCCCCCccccccCHHHHHHHHHHHHHhhCC----CCcEEEEE
Q 039839 96 MDLEGSDSRERGEDDTTFEKQSALFALAI--ADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP----RKTTLLFV 169 (825)
Q Consensus 96 ld~~g~~~~er~e~~~~~ErQRv~iArAL--a~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~----~g~TIL~V 169 (825)
+|..|....++ ..+.....||.++ ++++|.+-+ ..++. ++...+..+.++.+.+..+ .-..+++|
T Consensus 145 lDTeG~~~~~~-----~~~~d~~ifal~~lLSs~~IyN~~-~~i~~---~~l~~L~~~~e~~~~~~~~~~~~~fp~l~wv 215 (447)
T 3q5d_A 145 MDTQGTFDSQS-----TLRDSATVFALSTMISSIQVYNLS-QNVQE---DDLQHLQLFTEYGRLAMEETFLKPFQSLIFL 215 (447)
T ss_dssp EEEECCCSSHH-----HHHHHHHHHHHHHHHCSEEEEEES-SSCCH---HHHHHHHHHHHHHHHTSCCCSSCSEEEEEEE
T ss_pred EcCCccccccc-----chhhhHHHHHHHHHHhhHHHHhhc-ccccH---HHHHHHHHHHHHHHHHHHhhcccCCCceEEE
Confidence 78888876543 2333334445544 499998831 22221 1255566677765533222 12378999
Q ss_pred ecCCCCc---------cccccCcEEEEeCCeEEEecCccccc-CCccccccc-ccccccccccccc--------------
Q 039839 170 IRDKTKT---------PLEYLEPILREDIQKIWDAVPKPQTL-KNTPLSEFF-NVEVTALSSYEEK-------------- 224 (825)
Q Consensus 170 THDl~~a---------~l~~~drvlvl~~GkI~~~g~~~e~l-~~~~l~d~f-~~~~~~l~h~~~~-------------- 224 (825)
.||.... +.++.++++-...| ..++.- -...+.++| +.....+||+..+
T Consensus 216 vRD~~~~l~~~~g~~t~~eyLe~~L~~~~~------~~~~~~~~r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L 289 (447)
T 3q5d_A 216 VRDWSFPYEFSYGADGGAKFLEKRLKVSGN------QHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEI 289 (447)
T ss_dssp EEEECCTTTSCSBHHHHHHHHHHHHHSSTT------CSSSSCCHHHHHHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGS
T ss_pred EeeccccccccCCCCCHHHHHHHHHhhccC------ccHHHHHHHHHHHHhCCCceEEeccCcccchhhhhhhhcchhhc
Confidence 9998542 11122332221111 111111 124467778 4777777777531
Q ss_pred hhhHHHHHHHHhhhhcccCCCCCccc--cccccccCCcccccHHHHHHHHhhcCCCCCchhhhHhhhhchHHHHHHHHHh
Q 039839 225 EGQFKEQVAELRQRFFHSISPGGLAG--DRQGVVPASGFSFSAQQIWRVIKENKDLDLPAHKVMVATVRCEEIANDKLRR 302 (825)
Q Consensus 225 ~~~F~~~v~~Lr~~f~~~~~~~~l~~--~~~~~iP~dg~~~~~~~iW~~I~~nkdLdlP~q~~~lA~~rC~ei~~~~~~~ 302 (825)
..+|.+++..|+..+..+. .+.. .....++..+|..|++.+|++|.+|+..++|++-+++|+++|+++..++++.
T Consensus 290 ~~~F~~~l~~l~~~i~~~~---~~~~K~~~G~~vtg~~L~~~~~~yv~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~ 366 (447)
T 3q5d_A 290 DDEFIKNLKILIPWLLSPE---SLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDT 366 (447)
T ss_dssp CHHHHHHHHHHHHHHHSTT---TCCCCEETTEECBHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCcc---cccccccCCEeecHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2679999999998887321 2211 1222344455999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHh-cCC---cccHHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhhhHHH
Q 039839 303 LSADEGWLALEEAVQ-EGP---VSGFGKRLSSVLDTYLSEYDMEAVYFDEGVRNAKRKQLESKALDFVYPT 369 (825)
Q Consensus 303 f~~~~~~~~l~~~~~-~g~---~~~fg~~~~~~~~~~l~~yd~~A~ry~~~V~~~kr~~L~~~i~~~l~~~ 369 (825)
|... +++.+. ..+ .++|....+..+++||+.|+..+.++.+.++++.+++|+++|...+..+
T Consensus 367 Y~~~-----m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~~~~~~L~~~l~~~~~~~ 432 (447)
T 3q5d_A 367 YNKK-----MEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY 432 (447)
T ss_dssp HHHH-----HHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9652 333322 122 3469999999999999999999966699999999999999998775544
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=1.1e-18 Score=212.29 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 110 DTTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 110 ~~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
...+|+|||+||++|+ +||||||||+|||+.. .+.++++|.++.++ |.|||+||||++.+. .||+
T Consensus 806 LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~------~~~L~~lL~~L~~~-G~TVIvI~HdL~~i~--~ADr 876 (916)
T 3pih_A 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED------VRKLVEVLHRLVDR-GNTVIVIEHNLDVIK--NADH 876 (916)
T ss_dssp CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT--TCSE
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH--hCCE
Confidence 4556999999999998 4999999999999999 99999999999876 999999999998775 6999
Q ss_pred EEEE------eCCeEEEecCcccccCC
Q 039839 184 ILRE------DIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 184 vlvl------~~GkI~~~g~~~e~l~~ 204 (825)
|++| ++|+|++.|++++++..
T Consensus 877 IivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 877 IIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 9999 89999999998887654
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.74 E-value=1.3e-18 Score=210.07 Aligned_cols=85 Identities=9% Similarity=0.082 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 111 TTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 111 ~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
..+|+|||+||++|+ +||||||||+|||+.. ...+++++.++.++ |.|||+||||++++. .||+|
T Consensus 732 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~tVIvisHdl~~i~--~aDri 802 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD------VERLQRQLVKLVDA-GNTVIAVEHKMQVVA--ASDWV 802 (842)
T ss_dssp CHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT--TCSEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH--hCCEE
Confidence 445999999999999 3999999999999999 99999999999876 999999999998775 79999
Q ss_pred EEE------eCCeEEEecCcccccCC
Q 039839 185 LRE------DIQKIWDAVPKPQTLKN 204 (825)
Q Consensus 185 lvl------~~GkI~~~g~~~e~l~~ 204 (825)
++| ++|+|+..|++++++..
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 999 68999999998876643
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.73 E-value=1.5e-18 Score=210.30 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 110 DTTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 110 ~~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
...+|||||+||++|+ +||||||||+|||+.. +..++++|.++.++ |.|||+||||++.+. .||+
T Consensus 846 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~TVIvisHdl~~i~--~aDr 916 (972)
T 2r6f_A 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD------IARLLDVLHRLVDN-GDTVLVIEHNLDVIK--TADY 916 (972)
T ss_dssp CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT--TCSE
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH--hCCE
Confidence 3455999999999999 5999999999999999 99999999999875 999999999998764 7999
Q ss_pred EEEE------eCCeEEEecCcccccC
Q 039839 184 ILRE------DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 184 vlvl------~~GkI~~~g~~~e~l~ 203 (825)
+++| ++|+|+..|++++++.
T Consensus 917 IivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 9999 6899999998877654
No 65
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.73 E-value=2.7e-19 Score=177.04 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=86.1
Q ss_pred ccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCc-------cchhHHHHHH---hh
Q 039839 30 TTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCV-------GIEPFTIAMD---LE 99 (825)
Q Consensus 30 ~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t-------~~enl~l~ld---~~ 99 (825)
++++.+ .+|++++|+||||||||||+|++++-. ....+. ...|++++... ..+....... ..
T Consensus 1 ~vsl~i--~~gei~~l~G~nGsGKSTl~~~~~~~~----~~~~~d--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 1 SMKLTI--PELSLVVLIGSSGSGKSTFAKKHFKPT----EVISSD--FCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp CEEEEE--ESSEEEEEECCTTSCHHHHHHHHSCGG----GEEEHH--HHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CccccC--CCCEEEEEECCCCCCHHHHHHHHccCC----eEEccH--HHHHHhcCcccchhhHHHHHHHHHHHHHHHHhC
Confidence 467888 999999999999999999999543210 000000 00122222111 1111111110 11
Q ss_pred CCChh-hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccc------cC----HHHHHHHHHHHHHhhCCCCcE
Q 039839 100 GSDSR-ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQA------AN----KPLLKTVFQVMMRLFSPRKTT 165 (825)
Q Consensus 100 g~~~~-er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Ept------a~----~~~~~~V~elL~~L~~~~g~T 165 (825)
|.... .........+|||++||+|++ ++|+|||||++||+... .. ......+.+.++++.++ |.|
T Consensus 73 g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~t 151 (171)
T 4gp7_A 73 GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFR 151 (171)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCc
Confidence 21110 011112456999999999999 99999999999998831 00 11267888888888776 999
Q ss_pred EEEEecCCCCcc
Q 039839 166 LLFVIRDKTKTP 177 (825)
Q Consensus 166 IL~VTHDl~~a~ 177 (825)
+|+||||++.+.
T Consensus 152 vi~vtH~~~~~~ 163 (171)
T 4gp7_A 152 YVYILNSPEEVE 163 (171)
T ss_dssp EEEEECSHHHHH
T ss_pred EEEEeCCHHHhh
Confidence 999999997663
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.72 E-value=2.5e-18 Score=209.10 Aligned_cols=85 Identities=8% Similarity=0.051 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHH------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 110 DTTFEKQSALFALAIA------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 110 ~~~~ErQRv~iArALa------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
...+|||||+||++|+ +||||||||+|||+.. ...++++|.++.++ |.|||+||||++.+. .||+
T Consensus 864 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~TVIvisHdl~~i~--~aDr 934 (993)
T 2ygr_A 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD------IRKLLNVINGLVDK-GNTVIVIEHNLDVIK--TSDW 934 (993)
T ss_dssp SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT--TCSE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH--hCCE
Confidence 3455999999999999 5999999999999999 99999999999875 999999999998765 7999
Q ss_pred EEEE------eCCeEEEecCcccccC
Q 039839 184 ILRE------DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 184 vlvl------~~GkI~~~g~~~e~l~ 203 (825)
+++| ++|+|+..|++++++.
T Consensus 935 IivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999 6899999998877654
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.71 E-value=1.7e-17 Score=185.17 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcE
Q 039839 110 DTTFEKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPI 184 (825)
Q Consensus 110 ~~~~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drv 184 (825)
...+||||++||++|+ ++|||||||++||++. ...|.+.|+++. + |.|||+||||++++. .||++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~------~~~l~~~L~~l~-~-~~~vi~itH~~~~~~--~~d~i 365 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA------AIAVAEQLSRLA-D-TRQVLVVTHLAQIAA--RAHHH 365 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHH------HHHHHHHHHHHT-T-TSEEEEECSCHHHHT--TCSEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHh-C-CCEEEEEeCcHHHHh--hcCeE
Confidence 4677999999999998 5899999999999999 999999999997 4 899999999997765 79999
Q ss_pred EEE----eCCeEEEec
Q 039839 185 LRE----DIQKIWDAV 196 (825)
Q Consensus 185 lvl----~~GkI~~~g 196 (825)
+++ ++|+++...
T Consensus 366 ~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 366 YKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCceEEEE
Confidence 999 899987764
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=1.5e-19 Score=185.46 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=85.2
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc--------ccceeeEEcCCCccchhH-HHH
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR--------SQTTKGIWIAKCVGIEPF-TIA 95 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~--------~q~~~G~~~~~~t~~enl-~l~ 95 (825)
..+++++ .+|++++|+||||||||||||+|+|+ .++-+...+. ....+|+++|.. .+|+ .+.
T Consensus 13 ~~~l~~i------~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~ 83 (208)
T 3b85_A 13 KHYVDAI------DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYL 83 (208)
T ss_dssp HHHHHHH------HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTT
T ss_pred HHHHHhc------cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHH
Confidence 3466664 56779999999999999999999999 6433322210 123467777654 4555 231
Q ss_pred H----HhhCCChhhhhhhhh---HHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcE
Q 039839 96 M----DLEGSDSRERGEDDT---TFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT 165 (825)
Q Consensus 96 l----d~~g~~~~er~e~~~---~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~T 165 (825)
. ...+.....+.+... -+||||++|||||+ ++|||||||++ . +..++++++++ ++ |+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~------~~~l~~~l~~l-~~-g~t 151 (208)
T 3b85_A 84 RPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----T------PAQMKMFLTRL-GF-GSK 151 (208)
T ss_dssp HHHHHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----C------HHHHHHHHTTB-CT-TCE
T ss_pred HHHHHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----c------HHHHHHHHHHh-cC-CCE
Confidence 1 111111111111111 15999999999999 99999988888 4 88999999998 54 899
Q ss_pred EEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 166 LLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 166 IL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
|| ||||++.+. +....++|..+
T Consensus 152 ii-vtHd~~~~~-----~~~~~~~G~~~ 173 (208)
T 3b85_A 152 MV-VTGDITQVD-----LPGGQKSGLRL 173 (208)
T ss_dssp EE-EEEC-----------------CCHH
T ss_pred EE-EECCHHHHh-----CcCCCCCcHHH
Confidence 99 999987664 12234566554
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.67 E-value=9.6e-17 Score=177.80 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHH---------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc
Q 039839 110 DTTFEKQSALFALAIA---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY 180 (825)
Q Consensus 110 ~~~~ErQRv~iArALa---------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~ 180 (825)
...+|+||++||+||+ ++|||||||++||+.. +..+++++.++.+. |.|||+||||++... .
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~------~~~~~~~l~~l~~~-g~tvi~itH~~~~~~--~ 350 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTEN------KEKIASVLKELERL-NKVIVFITHDREFSE--A 350 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHH------HHHHHHHHHGGGGS-SSEEEEEESCHHHHT--T
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecchHHHH--h
Confidence 3455999999999998 7999999999999999 99999999999875 999999999997754 7
Q ss_pred cCcEEEEeCCeEEE
Q 039839 181 LEPILREDIQKIWD 194 (825)
Q Consensus 181 ~drvlvl~~GkI~~ 194 (825)
||++++|++|+|+.
T Consensus 351 ~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 351 FDRKLRITGGVVVN 364 (365)
T ss_dssp CSCEEEEETTEEC-
T ss_pred CCEEEEEECCEEEe
Confidence 99999999999864
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.59 E-value=2.4e-16 Score=157.66 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=88.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCCc---------ccceeeEEcCCCccchhHHHHHHhhCCCh----hhhhh
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR---------SQTTKGIWIAKCVGIEPFTIAMDLEGSDS----RERGE 108 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~---------~q~~~G~~~~~~t~~enl~l~ld~~g~~~----~er~e 108 (825)
+++|+||||||||||+|+|+|+.... ..|. ....+|+.++..++.+++. ...+... .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~---~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 75 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIF---SSKFFTSKKLVGSYGV 75 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEE---EETTCCCSSEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc---CCCEEhhhhccccccceeEEEeecCcHHHHHH---HhhcCCcccccccccc
Confidence 58999999999999999999985311 1121 1234677776654444431 0011110 11223
Q ss_pred hhhHHHHHHHHHHHH-----HH---HHheecC--CCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEec---CCCC
Q 039839 109 DDTTFEKQSALFALA-----IA---DIVLINM--WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIR---DKTK 175 (825)
Q Consensus 109 ~~~~~ErQRv~iArA-----La---~VLLLDE--PtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTH---Dl~~ 175 (825)
....+||||++||+| ++ ++||||| ||++||+.. ...+.+.+.+ .+.|+|+++| |+..
T Consensus 76 ~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~------~~~l~~~l~~----~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF------RDLVRQIMHD----PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH------HHHHHHHHTC----TTSEEEEECCSSCCSHH
T ss_pred CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH------HHHHHHHHhc----CCCeEEEEEccCCCchH
Confidence 356789999999996 77 9999999 999999887 8888777754 3778999986 5555
Q ss_pred ccccccCcEEEEeCCeEEE
Q 039839 176 TPLEYLEPILREDIQKIWD 194 (825)
Q Consensus 176 a~l~~~drvlvl~~GkI~~ 194 (825)
+. .+|++ .+|+|+.
T Consensus 146 ~~-~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 146 VK-EIRRL----PGAVLIE 159 (178)
T ss_dssp HH-HHHTC----TTCEEEE
T ss_pred HH-HHHhc----CCcEEEE
Confidence 53 45666 4566664
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.56 E-value=4.9e-17 Score=165.15 Aligned_cols=156 Identities=13% Similarity=0.016 Sum_probs=89.2
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccC--------CcCCCcccceeeEEcCCCccchhHHH--
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREM--------DAFRGRSQTTKGIWIAKCVGIEPFTI-- 94 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~--------~~~~G~~q~~~G~~~~~~t~~enl~l-- 94 (825)
.+++.+ ..+ .+|++++|+||||||||||+|+|+|+..... .+..+. ...+|++++..........
T Consensus 9 ~~~~~~--~~i--~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPA--AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGE-VDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTC-CBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCC--CCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccc-cCCCeeEecCHHHHHHHHhcC
Confidence 445565 577 8999999999999999999999999953110 111121 2346777765432211110
Q ss_pred ----H---H---HhhCCChhhhhhh------------hhHHHHHHHHHHHH---HH---HHheecCCCCCCccccccCHH
Q 039839 95 ----A---M---DLEGSDSRERGED------------DTTFEKQSALFALA---IA---DIVLINMWCHDIGREQAANKP 146 (825)
Q Consensus 95 ----~---l---d~~g~~~~er~e~------------~~~~ErQRv~iArA---La---~VLLLDEPtsgLD~Epta~~~ 146 (825)
. . ...|.+..+..+. ...++.++-.++.. ++ ++++||||++++|.+. -+.
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~--d~~ 161 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTET--ADV 161 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSC--HHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCC--HHH
Confidence 0 0 1112222111111 11223334334442 33 7999999999985330 023
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 147 LLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 147 ~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
.++.+.++++++..+.|.|+|+||||++.+. ..||+++++.
T Consensus 162 ~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~-~~~d~i~~l~ 202 (207)
T 1znw_A 162 IQRRLDTARIELAAQGDFDKVVVNRRLESAC-AELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHHHGGGGSSEEEECSSHHHHH-HHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhccCcEEEECCCHHHHH-HHHHHHHHhc
Confidence 4889999999998656899999999998773 5899998874
No 72
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.56 E-value=7.9e-16 Score=190.03 Aligned_cols=162 Identities=19% Similarity=0.142 Sum_probs=106.8
Q ss_pred ceEEEEE-----eEEEecCccccccccccccccccCC-------CcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc
Q 039839 8 CCMQLID-----GNGEFNVDGLENFVRTTKLNHCGLS-------YAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS 75 (825)
Q Consensus 8 ~~Lel~n-----lsk~y~~~~l~~il~~isl~i~g~~-------GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~ 75 (825)
.+|+++| +++.|.+. ..+++++++++ .. |++++|+||||||||||||+| |+... +
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~--~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-~------- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGC--EEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-M------- 815 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESC--CCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-H-------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeecc--ccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-H-------
Confidence 4799999 99999321 56899999988 65 899999999999999999999 98531 1
Q ss_pred cceee-EEcCCC---ccchhHHHHHHhhCCChh-hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHH
Q 039839 76 QTTKG-IWIAKC---VGIEPFTIAMDLEGSDSR-ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPL 147 (825)
Q Consensus 76 q~~~G-~~~~~~---t~~enl~l~ld~~g~~~~-er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~ 147 (825)
..+| ++++.. ++.+++.. ..|.... ..+......+.+++++|++++ +++|||||++|+|+...
T Consensus 816 -aqiG~~Vpq~~~~l~v~d~I~~---rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg----- 886 (1022)
T 2o8b_B 816 -AQMGCYVPAEVCRLTPIDRVFT---RLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDG----- 886 (1022)
T ss_dssp -HTTTCCEESSEEEECCCSBEEE---ECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHH-----
T ss_pred -hheeEEeccCcCCCCHHHHHHH---HcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHH-----
Confidence 1233 444432 23333311 1122111 011111122556689999888 99999999999998761
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEE
Q 039839 148 LKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 148 ~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~ 193 (825)
...++.++..+.++.|+++||+|||++.+. ..++++.+++ |++.
T Consensus 887 ~~~~~~il~~L~~~~g~~vl~~TH~~el~~-~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 887 TAIANAVVKELAETIKCRTLFSTHYHSLVE-DYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEECCCHHHHH-HTSSCSSEEE-EEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-HhCCcceeec-CeEE
Confidence 344678888887655899999999998874 4689888775 8887
No 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.55 E-value=4.3e-15 Score=152.92 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcc--------cccc-CcEEEEe
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP--------LEYL-EPILRED 188 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~--------l~~~-drvlvl~ 188 (825)
++|++|||++++|... ..+..++.+.+++..+.+. |+|||+|||++..+. ..+| |++++++
T Consensus 137 ~~lilDep~~~ld~~~-d~~~~~~~l~~l~~~l~~~-g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLE-EERKIREVLLKLNTILLEM-GVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SEEEEECHHHHHHHSS-SGGGHHHHHHHHHHHHHHH-CCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CEEEEccHHHHHhhcC-CHHHHHHHHHHHHHHHHHC-CCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 8999999999997211 0023366688888888765 999999999996541 1367 9999996
No 74
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.55 E-value=2.5e-15 Score=183.73 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=102.0
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEEcCCCccchhHHHHHHhhC
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIWIAKCVGIEPFTIAMDLEG 100 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~~~~~t~~enl~l~ld~~g 100 (825)
..++++++++. ..|++++|+||||||||||||+|++... + +..|.. ...++++ +.+ +...|
T Consensus 649 ~~v~ndisl~~--~~g~i~~ItGpNGsGKSTlLr~ial~~~--~-aq~G~~vpa~~~~~~~~-------d~i---~~~ig 713 (934)
T 3thx_A 649 AFIPNDVYFEK--DKQMFHIITGPNMGGKSTYIRQTGVIVL--M-AQIGCFVPCESAEVSIV-------DCI---LARVG 713 (934)
T ss_dssp CCCCEEEEEET--TTBCEEEEECCTTSSHHHHHHHHHHHHH--H-HHHTCCBSEEEEEEECC-------SEE---EEECC
T ss_pred eeecccceeec--CCCeEEEEECCCCCCHHHHHHHHHHHHH--H-HhcCCccccccccchHH-------HHH---HHhcC
Confidence 35778999999 8999999999999999999999943311 0 011110 0111111 000 00011
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHH--H---HHheecCCCCCCccccccCHHHHHHH-HHHHHHhhCCCCcEEEEEecCCC
Q 039839 101 SDSRERGEDDTTFEKQSALFALAI--A---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 101 ~~~~er~e~~~~~ErQRv~iArAL--a---~VLLLDEPtsgLD~Epta~~~~~~~V-~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
... ........++.++..+|+++ + +++|||||++|+|+.. ...+ ..++..+.++.|+++||+|||++
T Consensus 714 ~~d-~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~------~~~i~~~il~~l~~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 714 AGD-SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYD------GFGLAWAISEYIATKIGAFCMFATHFHE 786 (934)
T ss_dssp ----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHH------HHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred chh-hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence 111 11122345666666677666 4 8999999999999987 6666 66667776545899999999998
Q ss_pred CccccccCcEEEEeCCeEEEecCcccc
Q 039839 175 KTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 175 ~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
.+. +|+++..+.+|++...+++.++
T Consensus 787 l~~--lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 787 LTA--LANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp GGG--GGGTCTTEEEEEEEEEEETTEE
T ss_pred HHH--HhcccceeEeeEEEEEecCCcE
Confidence 876 8999999999999988765543
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.51 E-value=2.2e-15 Score=169.41 Aligned_cols=146 Identities=16% Similarity=0.055 Sum_probs=99.0
Q ss_pred ccccccccccccCCCc--------------------EEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------ccee
Q 039839 26 NFVRTTKLNHCGLSYA--------------------VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------QTTK 79 (825)
Q Consensus 26 ~il~~isl~i~g~~Ge--------------------ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------q~~~ 79 (825)
.+++++++.+ .+|+ ++||+||||||||||+|+|+|+. .+..|.. .+..
T Consensus 37 ~~l~~is~~i--~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~----~p~~GsI~~~g~~~t~~ 110 (413)
T 1tq4_A 37 EILNLIELRM--RAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG----NEEEGAAKTGVVEVTME 110 (413)
T ss_dssp HHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC----TTSTTSCCCCC----CC
T ss_pred HHhhhcccee--cCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC----CccCceEEECCeeccee
Confidence 5788999999 9999 99999999999999999999984 4455541 1123
Q ss_pred eEEcCCC-----ccchhHHHH---------HHhhCCChhhhhhhhhHH--HHHHHHHHHHHH-------------HHhee
Q 039839 80 GIWIAKC-----VGIEPFTIA---------MDLEGSDSRERGEDDTTF--EKQSALFALAIA-------------DIVLI 130 (825)
Q Consensus 80 G~~~~~~-----t~~enl~l~---------ld~~g~~~~er~e~~~~~--ErQRv~iArALa-------------~VLLL 130 (825)
|++++.. ++.+++.+. +...+.......-..... |+||+.||++++ +++++
T Consensus 111 ~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 111 RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred EEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 5665432 223332221 111111100000001222 999999999997 59999
Q ss_pred cCCCCCCccccccCHHHHHHHHHHHHHhh-----CC---CCcEEEEEecCCCC--ccccccCcE
Q 039839 131 NMWCHDIGREQAANKPLLKTVFQVMMRLF-----SP---RKTTLLFVIRDKTK--TPLEYLEPI 184 (825)
Q Consensus 131 DEPtsgLD~Epta~~~~~~~V~elL~~L~-----~~---~g~TIL~VTHDl~~--a~l~~~drv 184 (825)
||||+|||+.. +..+++.++++. +. ...++++++|+++. .. ..||++
T Consensus 191 DEPtsgLD~~~------~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e-~L~d~I 247 (413)
T 1tq4_A 191 NEADGEPQTFD------KEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP-VLMDKL 247 (413)
T ss_dssp HHHTTCCTTCC------HHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHH-HHHHHH
T ss_pred CcccccCCHHH------HHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHH-HHHHHH
Confidence 99999999999 999999998885 21 24678999999865 42 356665
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.49 E-value=1.8e-15 Score=171.51 Aligned_cols=169 Identities=11% Similarity=-0.076 Sum_probs=122.7
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------- 74 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------- 74 (825)
++++++++++.|+.. ..+++++ +.+ .+|++++|+|||||||||||++|+|+.. +..|.
T Consensus 130 ~~l~~~~v~~~~~tg--~~vld~v-l~i--~~Gq~~~IvG~sGsGKSTLl~~Iag~~~----~~~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRAINAL-LTV--GRGQRMGLFAGSGVGKSVLLGMMARYTR----ADVIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHHHHHH-SCC--BTTCEEEEEECTTSSHHHHHHHHHHHSC----CSEEEEEEESCCHHHHHH
T ss_pred CceEEeccceecCCC--ceEEeee-EEe--cCCCEEEEECCCCCCHHHHHHHHhcccC----CCeEEEEEeceecHHHHH
Confidence 368899999999732 5689999 999 9999999999999999999999999953 33332
Q ss_pred ----------ccceeeEEcCC-Cc------cchhHHHHHHhhCCChhh---h---hhhhhHHHHHHHHHHHHHHHHheec
Q 039839 75 ----------SQTTKGIWIAK-CV------GIEPFTIAMDLEGSDSRE---R---GEDDTTFEKQSALFALAIADIVLIN 131 (825)
Q Consensus 75 ----------~q~~~G~~~~~-~t------~~enl~l~ld~~g~~~~e---r---~e~~~~~ErQRv~iArALa~VLLLD 131 (825)
...++++++|. .. +.++..+.....+..+.. . .......| ||++|| +.
T Consensus 201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--------l~ 271 (438)
T 2dpy_A 201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--------IG 271 (438)
T ss_dssp HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--------TT
T ss_pred HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--------hC
Confidence 12346788763 22 244555544433211110 0 11112336 999998 44
Q ss_pred CC--CCCCccccccCHHHHHHHHHHHHHhhC---CCCc-----EEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 132 MW--CHDIGREQAANKPLLKTVFQVMMRLFS---PRKT-----TLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 132 EP--tsgLD~Epta~~~~~~~V~elL~~L~~---~~g~-----TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
+| |+|||+.. ...+.+++.++.+ +.|. ||+++|||++ .+ +||+++++.+|+|+.++++.+.
T Consensus 272 ~p~~t~glD~~~------~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~--iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 272 EPPATKGYPPSV------FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DP--IADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp CCCCSSSCCTTH------HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CH--HHHHHHHHSSEEEEECHHHHHT
T ss_pred CCcccccCCHHH------HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-ch--hhceEEEEeCcEEEEeCCHHHc
Confidence 55 89999988 9999999999876 3374 9999999999 54 7999999999999999987665
Q ss_pred cC
Q 039839 202 LK 203 (825)
Q Consensus 202 l~ 203 (825)
..
T Consensus 343 ~~ 344 (438)
T 2dpy_A 343 GH 344 (438)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 77
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.48 E-value=2.2e-13 Score=147.92 Aligned_cols=73 Identities=10% Similarity=-0.009 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC
Q 039839 110 DTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 110 ~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d 182 (825)
...+||||++||++|+ ++|||||||++||+.. ...+++++.++. + |+++|+|||+.+... .||
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~-~-~~~vi~~tH~~~~~~--~~d 289 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN------AERFKRLLKENS-K-HTQFIVITHNKIVME--AAD 289 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH------HHHHHHHHHHHT-T-TSEEEEECCCTTGGG--GCS
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHhc-C-CCeEEEEECCHHHHh--hCc
Confidence 3556999999999984 7999999999999999 999999999984 3 789999999976554 799
Q ss_pred cE--EEEeCCeE
Q 039839 183 PI--LREDIQKI 192 (825)
Q Consensus 183 rv--lvl~~GkI 192 (825)
++ +++.+|..
T Consensus 290 ~~~~v~~~~g~s 301 (322)
T 1e69_A 290 LLHGVTMVNGVS 301 (322)
T ss_dssp EEEEEEESSSCE
T ss_pred eEEEEEEeCCEE
Confidence 76 77777754
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.48 E-value=3.4e-14 Score=164.30 Aligned_cols=169 Identities=11% Similarity=-0.058 Sum_probs=105.5
Q ss_pred cceEEEEEeEEEecCcccccccccccc-ccccCCCcEEEEECCCCCChhHHHHH--HHhcccccCCcCCCcc--------
Q 039839 7 CCCMQLIDGNGEFNVDGLENFVRTTKL-NHCGLSYAVVAIMGPQSSGKSTLMNH--LFHTNFREMDAFRGRS-------- 75 (825)
Q Consensus 7 ~~~Lel~nlsk~y~~~~l~~il~~isl-~i~g~~GeivaIiGpNGSGKSTLLn~--L~Gl~~~~~~~~~G~~-------- 75 (825)
..+++..++.+..++ ..+++++++ ++ .+|++++|+||||||||||+++ +.|+.. +..|..
T Consensus 10 ~~~~~~~~~~~~~~g---~~~Ld~i~~G~i--~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~----~~~g~i~v~g~~~~ 80 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTM---IEGFDDISHGGL--PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE----FDEPGVFVTFEETP 80 (525)
T ss_dssp ----CCSSCCEECCC---CTTHHHHTTSSE--ETTSEEEEEESTTSSHHHHHHHHHHHHHHH----HCCCEEEEESSSCH
T ss_pred CCCccccccccccCC---chhHHHhcCCCC--CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEEEEeCCH
Confidence 345666666554444 568999999 89 9999999999999999999999 689843 333331
Q ss_pred ------cceeeEEcCCCccchhHHHHHHhhCCChhhhhhh--hhHHHHHHHHHHHHHH----HHheecCCCCCCcccccc
Q 039839 76 ------QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGED--DTTFEKQSALFALAIA----DIVLINMWCHDIGREQAA 143 (825)
Q Consensus 76 ------q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~--~~~~ErQRv~iArALa----~VLLLDEPtsgLD~Epta 143 (825)
...+|+++|......++. .+... ......+. ...+..+.-.++.+|+ ++|+||||++.+.. +
T Consensus 81 ~~~~~~~~~~g~~~q~~~~~~~l~-~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~---~ 154 (525)
T 1tf7_A 81 QDIIKNARSFGWDLAKLVDEGKLF-ILDAS--PDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ---Y 154 (525)
T ss_dssp HHHHHHHGGGTCCHHHHHHTTSEE-EEECC--CCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT---T
T ss_pred HHHHHHHHHcCCChHHhhccCcEE-EEecC--cccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh---c
Confidence 122344443321100100 00000 00000011 1223445556666776 89999999985421 1
Q ss_pred C--HHHHHHHHHHHHHhhCCCCcEEEEEecCCCCc--------cccccCcEEEEeCCe
Q 039839 144 N--KPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT--------PLEYLEPILREDIQK 191 (825)
Q Consensus 144 ~--~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a--------~l~~~drvlvl~~Gk 191 (825)
+ +..++.++++++.+.+. |+|+|+|||+++.+ ...+||+|++|++|+
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~-g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQI-GATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-TCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHC-CCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 1 33489999999999875 99999999999764 112499999999844
No 79
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.48 E-value=1.3e-14 Score=147.35 Aligned_cols=152 Identities=11% Similarity=0.008 Sum_probs=87.6
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCc-cchhHHHHHHhhCCChhhhhhhh--
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCV-GIEPFTIAMDLEGSDSRERGEDD-- 110 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t-~~enl~l~ld~~g~~~~er~e~~-- 110 (825)
++ .+|++++|+||||||||||+++|+|... .++..|......-++..... ....+.......+.......+..
T Consensus 21 gi--~~G~~~~l~G~nGsGKSTll~~l~g~~~--~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 96 (231)
T 4a74_A 21 GI--ETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYV 96 (231)
T ss_dssp SE--ESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEE
T ss_pred CC--CCCcEEEEECCCCCCHHHHHHHHHHHHh--cccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEE
Confidence 67 8899999999999999999999999632 12222321111112211111 12233333333343322111100
Q ss_pred -----hHHHHHHHHHHHHHH----------HHheecCCCCCCccccccC--HH----HHHHHHHHHHHhhCCCCcEEEEE
Q 039839 111 -----TTFEKQSALFALAIA----------DIVLINMWCHDIGREQAAN--KP----LLKTVFQVMMRLFSPRKTTLLFV 169 (825)
Q Consensus 111 -----~~~ErQRv~iArALa----------~VLLLDEPtsgLD~Epta~--~~----~~~~V~elL~~L~~~~g~TIL~V 169 (825)
...+++.+..+++++ ++|++|||++.+|++...+ .. ....+++.+.++.++.|+|||+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~v 176 (231)
T 4a74_A 97 ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 176 (231)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 011222233333333 4999999999999865443 11 13477888888876669999999
Q ss_pred ecCCCC----ccccccCcEEEEeCC
Q 039839 170 IRDKTK----TPLEYLEPILREDIQ 190 (825)
Q Consensus 170 THDl~~----a~l~~~drvlvl~~G 190 (825)
||+... .. ..||++++++.|
T Consensus 177 tH~~~~~g~~~~-~~~d~~l~l~~~ 200 (231)
T 4a74_A 177 NQVQANGGHILA-HSATLRVYLRKG 200 (231)
T ss_dssp EECC----------CCSEEEEEEEC
T ss_pred eecccCcchhhH-hhceEEEEEEec
Confidence 996633 43 479999999864
No 80
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.46 E-value=4e-14 Score=166.63 Aligned_cols=168 Identities=11% Similarity=0.056 Sum_probs=87.3
Q ss_pred ceEEEEEeEEEecCcccccccccc----------ccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc--
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTT----------KLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-- 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~i----------sl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-- 75 (825)
.++.+.|+++.|+... ..+++.+ ++.+ ..++|+|||||||||||++|+|+..+ ..+|..
T Consensus 9 ~~i~~~~l~~~~~~~~-r~ll~~id~l~~~gv~~~l~l-----p~iaIvG~nGsGKSTLL~~I~Gl~~P---~~sG~vt~ 79 (608)
T 3szr_A 9 GSVAENNLCSQYEEKV-RPCIDLIDSLRALGVEQDLAL-----PAIAVIGDQSSGKSSVLEALSGVALP---RGSGIVTR 79 (608)
T ss_dssp -----------CHHHH-HHHHHHHHHHHHHSCCSSCCC-----CCEECCCCTTSCHHHHHHHHHSCC----------CCC
T ss_pred chhhhhhhhHHHHHHH-HHHHHHHHHHHhCCCCCcccC-----CeEEEECCCCChHHHHHHHHhCCCCC---CCCCeEEE
Confidence 3688999999996421 2233222 1222 24999999999999999999999532 133431
Q ss_pred ----------------cceeeEEcCCC------ccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHhee
Q 039839 76 ----------------QTTKGIWIAKC------VGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLI 130 (825)
Q Consensus 76 ----------------q~~~G~~~~~~------t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLL 130 (825)
...+|++++.. ++.+++.+.....+....... ++++.++.+.. +++|+
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s-------~~~i~l~i~~~~~p~LlLl 152 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGIS-------HELITLEISSRDVPDLTLI 152 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCC-------SCCEEEEEEESSSCCEEEE
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccc-------hHHHHHHhcCCCCCceeEe
Confidence 12345555443 234455444333221111000 00111111111 79999
Q ss_pred cCC------CCCCccccccCHHHHHHHHHHHHHhh-CCCCcEEEEEecCCCCccccc------------cCcEEEEeCCe
Q 039839 131 NMW------CHDIGREQAANKPLLKTVFQVMMRLF-SPRKTTLLFVIRDKTKTPLEY------------LEPILREDIQK 191 (825)
Q Consensus 131 DEP------tsgLD~Epta~~~~~~~V~elL~~L~-~~~g~TIL~VTHDl~~a~l~~------------~drvlvl~~Gk 191 (825)
||| |+|||+.. ...+.+++.++. ++.+.++++++||++.+. .. ...|+++.++.
T Consensus 153 DePGi~~~~t~~LD~~~------~~~i~~li~~~l~~~~~iil~vvt~~~d~a~-~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 153 DLPGITRVAVGNQPADI------GYKIKTLIKKYIQRQETISLVVVPSNVDIAT-TEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp ECCC------CCSSCSH------HHHHHHHHHHHTTSSSCCEEEEEESSSCTTT-CHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred eCCCccccccCCCCHHH------HHHHHHHHHHHHhcCCCCceEEEeccchhcc-HHHHHHHHHHhhcCCceEEEecchh
Confidence 999 99999888 999999999964 445789999999997542 11 24456666666
Q ss_pred EEEecCc
Q 039839 192 IWDAVPK 198 (825)
Q Consensus 192 I~~~g~~ 198 (825)
++..|+.
T Consensus 226 lv~~g~~ 232 (608)
T 3szr_A 226 LVDKGTE 232 (608)
T ss_dssp GSSSSST
T ss_pred hcCcccH
Confidence 5555543
No 81
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.46 E-value=5.8e-15 Score=162.58 Aligned_cols=168 Identities=11% Similarity=-0.031 Sum_probs=113.5
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc------------
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS------------ 75 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~------------ 75 (825)
++++++++++.|+.+ ..+++++ +.+ .+|++++|+|||||||||||++|+|+.. +..|..
T Consensus 44 ~~i~~~~l~~~~~tg--~~ald~l-l~i--~~Gq~~gIiG~nGaGKTTLl~~I~g~~~----~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRAIDGL-LTC--GIGQRIGIFAGSGVGKSTLLGMICNGAS----ADIIVLALIGERGREVNE 114 (347)
T ss_dssp CSTTCCCCCSEECCS--CHHHHHH-SCE--ETTCEEEEEECTTSSHHHHHHHHHHHSC----CSEEEEEEESCCHHHHHH
T ss_pred CCeeecccceecCCC--CEEEEee-eee--cCCCEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEecccHHHHHH
Confidence 368899999999732 5688999 999 9999999999999999999999999943 333320
Q ss_pred ----------cceeeEEcCCC-ccchhHHHHH------HhhCCChh------hhhhhhhHHHHHHHHHHHHHHHHheecC
Q 039839 76 ----------QTTKGIWIAKC-VGIEPFTIAM------DLEGSDSR------ERGEDDTTFEKQSALFALAIADIVLINM 132 (825)
Q Consensus 76 ----------q~~~G~~~~~~-t~~enl~l~l------d~~g~~~~------er~e~~~~~ErQRv~iArALa~VLLLDE 132 (825)
..+++++.+.. .....+.... +.....+. .........| |++++| +-+.
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-------l~~p 186 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-------SGEP 186 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-------TTCC
T ss_pred HHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-------cCCC
Confidence 01223333221 1111111111 11000000 0011112336 788887 3454
Q ss_pred C-CCCCccccccCHHHHHHHHHHHHHhhC-CCCc-----EEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 133 W-CHDIGREQAANKPLLKTVFQVMMRLFS-PRKT-----TLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 133 P-tsgLD~Epta~~~~~~~V~elL~~L~~-~~g~-----TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
| |.|+|+.. ...+.+++.++.+ +.|. ||+++|||++ .+ +||+++++.+|+|+.++++.+.
T Consensus 187 ~~t~Gldp~~------~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~--i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 187 DVRGGFPPSV------FSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DP--IGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CCBTTBCHHH------HHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CH--HHHHHHHHCSEEEEBCHHHHTT
T ss_pred CcccCCCHHH------HHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-Ch--hhhheEEeeCcEEEEeCCHHHc
Confidence 5 57888877 9999999999875 4487 9999999998 44 7999999999999999887664
No 82
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.43 E-value=7.5e-11 Score=137.88 Aligned_cols=350 Identities=17% Similarity=0.163 Sum_probs=204.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-ccceeeEEcC---CCccchhHHHHHHhhCCChhhhhhhhhHHHHH
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-SQTTKGIWIA---KCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQ 116 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-~q~~~G~~~~---~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQ 116 (825)
-+|+|+|+.|+|||||+|.|+|..... +..|. ...+.|+|.- ...........+|..|.....+....... .
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~--~ 114 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS--W 114 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH--H
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH--H
Confidence 479999999999999999999975211 22222 2345666531 11111222344566776654432221111 2
Q ss_pred HHHHHHHHHHHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCC------------------CcEEEEEecCCCCcc-
Q 039839 117 SALFALAIADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR------------------KTTLLFVIRDKTKTP- 177 (825)
Q Consensus 117 Rv~iArALa~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~------------------g~TIL~VTHDl~~a~- 177 (825)
..+++..++.++|+| .+.+++... ......+.+..+.+..+. --.++++.+|.....
T Consensus 115 ~fala~llss~lv~n-~~~~i~~~d---l~~l~~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~ 190 (592)
T 1f5n_A 115 IFALAVLLSSTFVYN-SIGTINQQA---MDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLE 190 (592)
T ss_dssp HHHHHHHHCSEEEEE-EESCSSHHH---HHTTHHHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEEEETCCCCCC
T ss_pred HHHHHHHhcCeEEEE-CCCCccHHH---HHHHHHHHHHhhhhhcccCcccccccccchhhhhccCCceEEEEecccchhc
Confidence 334555556888988 233443322 233444445444443320 136888889985431
Q ss_pred --------ccccCcEEEEeCCeEEEecCcccccC----Ccccccccc-cccccccccccc--------------hhhHHH
Q 039839 178 --------LEYLEPILREDIQKIWDAVPKPQTLK----NTPLSEFFN-VEVTALSSYEEK--------------EGQFKE 230 (825)
Q Consensus 178 --------l~~~drvlvl~~GkI~~~g~~~e~l~----~~~l~d~f~-~~~~~l~h~~~~--------------~~~F~~ 230 (825)
.++....+-.. .|..+++-. ...+..+|. .....+||+... ..+|.+
T Consensus 191 ~~g~~~t~~eyLe~~L~~~------~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~P~~~~~l~~L~~~~~~~L~peF~~ 264 (592)
T 1f5n_A 191 ADGQPLTPDEYLTYSLKLK------KGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQ 264 (592)
T ss_dssp CSSSCCCHHHHHHHHTCCC------CCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCSCGGGGGGGGGSCGGGSCHHHHH
T ss_pred cCCCCCCHHHHHHHHHhhc------cCCChhhHhhhhHHHHHHHhCCCCcEEEeCCCCcHHHHhhhccCChhhCCHHHHH
Confidence 00111111111 111111110 123455553 344455544221 368999
Q ss_pred HHHHHhhhhcccCCCCCccccccccccCCc--ccccHHHHHHHHhhcCCCCCchhhhHhhhhchHHHHHHHHHhhhhhhh
Q 039839 231 QVAELRQRFFHSISPGGLAGDRQGVVPASG--FSFSAQQIWRVIKENKDLDLPAHKVMVATVRCEEIANDKLRRLSADEG 308 (825)
Q Consensus 231 ~v~~Lr~~f~~~~~~~~l~~~~~~~iP~dg--~~~~~~~iW~~I~~nkdLdlP~q~~~lA~~rC~ei~~~~~~~f~~~~~ 308 (825)
++..|+..+.....+.. +.+.+|+.| |..|+...|++|.++.-..+++.-.++|+..|..+..++++.|...
T Consensus 265 ~l~~l~~~i~~~~~~K~----~~gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~a~~e~~~av~~A~~~Y~~~-- 338 (592)
T 1f5n_A 265 QVADFCSYIFSNSKTKT----LSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQ-- 338 (592)
T ss_dssp HHHHHHHHHHHHCCCCE----ETTTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcccccee----ecCCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999998885544432 334456666 9999999999999998888888889999999999999999999652
Q ss_pred hHHHHHHHhcCCc---ccHHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHH
Q 039839 309 WLALEEAVQEGPV---SGFGKRLSSVLDTYLSEYDMEAVYFDEGVRNAKRKQLESKALDFVYPTYS---TLLGHLRSKAF 382 (825)
Q Consensus 309 ~~~l~~~~~~g~~---~~fg~~~~~~~~~~l~~yd~~A~ry~~~V~~~kr~~L~~~i~~~l~~~~~---~~l~~l~~~~~ 382 (825)
+.+.+ .-|. +.|-..-.....+|++.|+..+.. .+..+-+++|...|...+..+.. ..-...++.++
T Consensus 339 ---M~~~~-~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~---d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll 411 (592)
T 1f5n_A 339 ---MGQKV-QLPTESLQELLDLHRDSEREAIEVFIRSSFK---DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLL 411 (592)
T ss_dssp ---HHHHC-CSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC---CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHhhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23322 2232 347777788899999999988643 33455667777777766655443 33344667777
Q ss_pred HHHHHHHHHHhhcCC-----chHHHHHHHHHHHHHHHHhhh
Q 039839 383 ESFKIQLEQSLKKGE-----GFAASVRTCTQSCMLEFDRGC 418 (825)
Q Consensus 383 ~~f~~~l~~~~~~~~-----~F~~~~~~~~~~~~~~f~~~~ 418 (825)
+.+...|...++.|. +| .......+....+|.+.+
T Consensus 412 ~~l~~~l~~~i~~g~~~~p~g~-~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 412 QVIFSPLEEEVKAGIYSKPGGY-RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHTTTTSSTTHH-HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCCcCCCCcH-HHHHHHHHHHHHHHHHhc
Confidence 777777776664322 12 223334555666665443
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.42 E-value=7.5e-15 Score=160.59 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=89.1
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeE-EcCCCccchhHHHHHHhhCCChhh
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGI-WIAKCVGIEPFTIAMDLEGSDSRE 105 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~-~~~~~t~~enl~l~ld~~g~~~~e 105 (825)
++.++++.+ .+|++++|+||||||||||||+|+|+ +++..|... -.|. .+........+.++ .|
T Consensus 160 ~l~~l~~~i--~~g~~v~i~G~~GsGKTTll~~l~g~----~~~~~g~i~-i~~~~e~~~~~~~~~i~~~---~g----- 224 (330)
T 2pt7_A 160 AISAIKDGI--AIGKNVIVCGGTGSGKTTYIKSIMEF----IPKEERIIS-IEDTEEIVFKHHKNYTQLF---FG----- 224 (330)
T ss_dssp HHHHHHHHH--HHTCCEEEEESTTSCHHHHHHHGGGG----SCTTSCEEE-EESSCCCCCSSCSSEEEEE---CB-----
T ss_pred HHhhhhhhc--cCCCEEEEECCCCCCHHHHHHHHhCC----CcCCCcEEE-ECCeeccccccchhEEEEE---eC-----
Confidence 577888999 99999999999999999999999999 556656520 0000 00000000000000 00
Q ss_pred hhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC
Q 039839 106 RGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 106 r~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d 182 (825)
..|+||++||+||. ++||+|||++ . .+.+.+..+... +.|+|+++|+.+.. ..||
T Consensus 225 ------gg~~~r~~la~aL~~~p~ilildE~~~-----~--------e~~~~l~~~~~g-~~tvi~t~H~~~~~--~~~d 282 (330)
T 2pt7_A 225 ------GNITSADCLKSCLRMRPDRIILGELRS-----S--------EAYDFYNVLCSG-HKGTLTTLHAGSSE--EAFI 282 (330)
T ss_dssp ------TTBCHHHHHHHHTTSCCSEEEECCCCS-----T--------HHHHHHHHHHTT-CCCEEEEEECSSHH--HHHH
T ss_pred ------CChhHHHHHHHHhhhCCCEEEEcCCCh-----H--------HHHHHHHHHhcC-CCEEEEEEcccHHH--HHhh
Confidence 45789999999999 9999998876 1 245666666643 56899999999844 4799
Q ss_pred cEEEEeCCe
Q 039839 183 PILREDIQK 191 (825)
Q Consensus 183 rvlvl~~Gk 191 (825)
|++++..|.
T Consensus 283 ri~~l~~g~ 291 (330)
T 2pt7_A 283 RLANMSSSN 291 (330)
T ss_dssp HHHHHHHTS
T ss_pred hheehhcCC
Confidence 999998775
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.41 E-value=9e-14 Score=148.40 Aligned_cols=156 Identities=9% Similarity=0.103 Sum_probs=91.2
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCcc-----------------
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVG----------------- 88 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~----------------- 88 (825)
..++++++++ .+|++++|+||||||||||++.|+|.. .+..|.. +.++-...+.
T Consensus 23 ~~Ld~i~~~l--~~G~~~~i~G~~G~GKTTl~~~ia~~~----~~~~G~~---v~~~~~e~~~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 23 TGINDKTLGA--RGGEVIMVTSGSGMGKSTFVRQQALQW----GTAMGKK---VGLAMLEESVEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp TTHHHHHCSB--CTTCEEEEEESTTSSHHHHHHHHHHHH----HHTSCCC---EEEEESSSCHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHhcCC--CCCeEEEEEeCCCCCHHHHHHHHHHHH----HHHcCCe---EEEEeCcCCHHHHHHHHHHHHcCCChh
Confidence 4688889999 999999999999999999999999984 3333421 1111111000
Q ss_pred -chhHHHH-H----------Hh---hCCChhhhhhhhhHH-HHHHHHHHHHHH---HHheecCCCCCCccccccCH-HHH
Q 039839 89 -IEPFTIA-M----------DL---EGSDSRERGEDDTTF-EKQSALFALAIA---DIVLINMWCHDIGREQAANK-PLL 148 (825)
Q Consensus 89 -~enl~l~-l----------d~---~g~~~~er~e~~~~~-ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~-~~~ 148 (825)
.+++... + .+ .+..-.......... .+|++. |+++. ++||+|||+..++.....+. ...
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~ 172 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMI 172 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHH
T ss_pred hccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHH
Confidence 0011000 0 00 000000000000111 266776 77777 99999999995432100111 347
Q ss_pred HHHHHHHHHhhCCCCcEEEEEecCC--C--------------------CccccccCcEEEEeCCeE
Q 039839 149 KTVFQVMMRLFSPRKTTLLFVIRDK--T--------------------KTPLEYLEPILREDIQKI 192 (825)
Q Consensus 149 ~~V~elL~~L~~~~g~TIL~VTHDl--~--------------------~a~l~~~drvlvl~~GkI 192 (825)
..+++.|++++++.|+|||+++|+. + .+ ...||+|++|+.|+.
T Consensus 173 ~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i-~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGAL-RQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CH-HHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHh-HhhCcEEEEEecCcc
Confidence 8899999999876699999999996 3 33 246999999998875
No 85
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.41 E-value=3.7e-13 Score=136.37 Aligned_cols=147 Identities=10% Similarity=-0.049 Sum_probs=88.9
Q ss_pred cccccccc-ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChh
Q 039839 26 NFVRTTKL-NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSR 104 (825)
Q Consensus 26 ~il~~isl-~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~ 104 (825)
..++++.. ++ .+|++++|+||||||||||++.|+|... +..|. +-++-.... .+.+...+...+....
T Consensus 10 ~~Ld~~~~ggi--~~G~~~~i~G~~GsGKTtl~~~l~~~~~----~~~~~----v~~~~~~~~-~~~~~~~~~~~~~~~~ 78 (235)
T 2w0m_A 10 LDFDKLIQGGI--PQGFFIALTGEPGTGKTIFSLHFIAKGL----RDGDP----CIYVTTEES-RDSIIRQAKQFNWDFE 78 (235)
T ss_dssp HHHHGGGTTSE--ETTCEEEEECSTTSSHHHHHHHHHHHHH----HHTCC----EEEEESSSC-HHHHHHHHHHTTCCCG
T ss_pred hHHHHHhcCCC--cCCCEEEEEcCCCCCHHHHHHHHHHHHH----HCCCe----EEEEEcccC-HHHHHHHHHHhcchHH
Confidence 34566666 67 8999999999999999999999998732 22222 111111111 1111111111111110
Q ss_pred hh--------------------hhhhhHHHHHHHHHHHHHH---H--HheecCCCCCC--ccccccCHHHHHHHHHHHHH
Q 039839 105 ER--------------------GEDDTTFEKQSALFALAIA---D--IVLINMWCHDI--GREQAANKPLLKTVFQVMMR 157 (825)
Q Consensus 105 er--------------------~e~~~~~ErQRv~iArALa---~--VLLLDEPtsgL--D~Epta~~~~~~~V~elL~~ 157 (825)
.. .......+.++...+.+.. + +||+|||++.+ |+.. ...+++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~------~~~~~~~l~~ 152 (235)
T 2w0m_A 79 EYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAM------ARKISYYLKR 152 (235)
T ss_dssp GGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGG------HHHHHHHHHH
T ss_pred HHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHH------HHHHHHHHHH
Confidence 00 0011122444444444433 7 99999999887 7666 8899999999
Q ss_pred hhCCCCcEEEEEecCC--------CCccccccCcEEEEeCC
Q 039839 158 LFSPRKTTLLFVIRDK--------TKTPLEYLEPILREDIQ 190 (825)
Q Consensus 158 L~~~~g~TIL~VTHDl--------~~a~l~~~drvlvl~~G 190 (825)
+.++.|+|+|+++|+. ..+. ..||++++++..
T Consensus 153 ~~~~~~~~vi~~~h~~~~~~~~~~~~~~-~~~d~vi~l~~~ 192 (235)
T 2w0m_A 153 VLNKWNFTIYATSQYAITTSQAFGFGVE-HVADGIIRFRRM 192 (235)
T ss_dssp HHHHTTEEEEEEEC-----------CHH-HHCSEEEEEEEE
T ss_pred HHHhCCCeEEEEeccCcccccccccchh-eeeeEEEEEEEE
Confidence 8766699999999999 3342 469999999754
No 86
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.41 E-value=9.3e-14 Score=169.52 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=90.0
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE---cCCCccchhHHHHHH
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW---IAKCVGIEPFTIAMD 97 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~---~~~~t~~enl~l~ld 97 (825)
..+++++++++ ..|++++|+||||||||||||+|+++.. + ...|.. ...++++ +......+++...
T Consensus 660 ~~V~ndvsl~~--~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~-aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~-- 732 (918)
T 3thx_B 660 QYVPNNTDLSE--DSERVMIITGPNMGGKSSYIKQVALITI--M-AQIGSYVPAEEATIGIVDGIFTRMGAADNIYKG-- 732 (918)
T ss_dssp SSCCEEEEECT--TSCCEEEEESCCCHHHHHHHHHHHHHHH--H-HHHTCCBSSSEEEEECCSEEEEEC-----------
T ss_pred ceecccccccC--CCCeEEEEECCCCCchHHHHHHHHHHHH--H-hhcCccccchhhhhhHHHHHHHhCChHHHHHHh--
Confidence 45788999999 9999999999999999999999987632 1 011110 0112211 1111111111100
Q ss_pred hhCCChhhhhhhhhHHHHHHHHHHHHHH--HHheecCCCCCCccccccCHHHHHHHH-HHHHHhhCCCCcEEEEEecCCC
Q 039839 98 LEGSDSRERGEDDTTFEKQSALFALAIA--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 98 ~~g~~~~er~e~~~~~ErQRv~iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V~-elL~~L~~~~g~TIL~VTHDl~ 174 (825)
.......|+|++.++++.. ++||||||++|+|+.. ...+. .++..+.++.|+|+||||||++
T Consensus 733 ---------~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~------~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 733 ---------RSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHD------GIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp ----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHH------HHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred ---------HHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 0112344888888888855 9999999999999988 77776 6777776545999999999998
Q ss_pred CccccccCc
Q 039839 175 KTPLEYLEP 183 (825)
Q Consensus 175 ~a~l~~~dr 183 (825)
.+. ++++
T Consensus 798 l~~--l~~~ 804 (918)
T 3thx_B 798 VCE--LEKN 804 (918)
T ss_dssp GGG--HHHH
T ss_pred HHH--HHhh
Confidence 775 5554
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.40 E-value=3.3e-13 Score=156.06 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=100.6
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhh-----
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRER----- 106 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er----- 106 (825)
+.++ .+|++++|+||||||||||+++++|... + .|. ..+.+.++... ..+...+...|.+..+.
T Consensus 275 ~g~i--~~G~i~~i~G~~GsGKSTLl~~l~g~~~----~-~G~--~vi~~~~ee~~--~~l~~~~~~~g~~~~~~~~~g~ 343 (525)
T 1tf7_A 275 GGGF--FKDSIILATGATGTGKTLLVSRFVENAC----A-NKE--RAILFAYEESR--AQLLRNAYSWGMDFEEMERQNL 343 (525)
T ss_dssp TSSE--ESSCEEEEEECTTSSHHHHHHHHHHHHH----T-TTC--CEEEEESSSCH--HHHHHHHHTTSCCHHHHHHTTS
T ss_pred CCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHH----h-CCC--CEEEEEEeCCH--HHHHHHHHHcCCCHHHHHhCCC
Confidence 3467 8999999999999999999999999843 2 243 12333344321 11111111123221110
Q ss_pred -------hhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC---
Q 039839 107 -------GEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK--- 173 (825)
Q Consensus 107 -------~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl--- 173 (825)
.......|+||+++|+++. ++||+| |+++||... .+...+..+.++++.+.+. |+|+|+|+||.
T Consensus 344 ~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~-~~~~~~~~i~~ll~~l~~~-g~tvilvsh~~~~~ 420 (525)
T 1tf7_A 344 LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGV-SNNAFRQFVIGVTGYAKQE-EITGLFTNTSDQFM 420 (525)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSS-CHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSSS
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhC-ChHHHHHHHHHHHHHHHhC-CCEEEEEECccccc
Confidence 0112455999999999998 999999 999999871 1122488899999988765 99999999998
Q ss_pred -------CCccccccCcEEEEeCCe
Q 039839 174 -------TKTPLEYLEPILREDIQK 191 (825)
Q Consensus 174 -------~~a~l~~~drvlvl~~Gk 191 (825)
..+. .+||++++|+.|+
T Consensus 421 ~~~~~~~~~l~-~~~D~vi~L~~ge 444 (525)
T 1tf7_A 421 GAHSITDSHIS-TITDTIILLQYVE 444 (525)
T ss_dssp CCCSSCSSCCT-TTCSEEEEEEEEE
T ss_pred CcccccCcccc-eeeeEEEEEEEEE
Confidence 4442 5799999998876
No 88
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.40 E-value=8.9e-14 Score=150.33 Aligned_cols=144 Identities=13% Similarity=0.029 Sum_probs=91.7
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------------------cceeeEEcCCCc
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------------------QTTKGIWIAKCV 87 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------------------q~~~G~~~~~~t 87 (825)
..+++.+ .+|++++|+||||||||||++.|+|+.. +..|+. +..++++++...
T Consensus 91 ~~l~~~~--~~g~vi~lvG~nGsGKTTll~~Lag~l~----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 91 TELQLGF--RKPAVIMIVGVNGGGKTTSLGKLAHRLK----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CSCCCCS--SSCEEEEEECCTTSCHHHHHHHHHHHHH----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred ccccccc--CCCcEEEEEcCCCCCHHHHHHHHHHHHH----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 4567777 8999999999999999999999999843 333330 123678776543
Q ss_pred -------cchhHHHHHHh---------hCCChhhhhhhhhHHHHHHHHHHHHHH---H--HheecCCCCCCccccccCHH
Q 039839 88 -------GIEPFTIAMDL---------EGSDSRERGEDDTTFEKQSALFALAIA---D--IVLINMWCHDIGREQAANKP 146 (825)
Q Consensus 88 -------~~enl~l~ld~---------~g~~~~er~e~~~~~ErQRv~iArALa---~--VLLLDEPtsgLD~Epta~~~ 146 (825)
+.+++.+.... .|.... ......++-+||++||+|++ + +|+|| ||+|+|...
T Consensus 165 ~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~-~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~----- 237 (302)
T 3b9q_A 165 KAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHT-NYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP----- 237 (302)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSC-CHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH-----
T ss_pred ccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcc-hhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH-----
Confidence 24555543211 121110 11122345699999999998 7 99999 999999765
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecCCCCcc--------ccccCcEEEEeCCeE
Q 039839 147 LLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP--------LEYLEPILREDIQKI 192 (825)
Q Consensus 147 ~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~--------l~~~drvlvl~~GkI 192 (825)
+ ++++.++.|.|+|++||.-+.+. ......|.++..|+.
T Consensus 238 -~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 238 -Q------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -H------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -H------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 2 23444334899999999322211 012345666666643
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.37 E-value=2.6e-15 Score=154.33 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=79.8
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCC-Cc----------ccceeeEEcCCCccchhHH-
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFR-GR----------SQTTKGIWIAKCVGIEPFT- 93 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~-G~----------~q~~~G~~~~~~t~~enl~- 93 (825)
.-++++++.+ .+|++++|+||||||||||+++|+|+. + +... |. ....+||+++....+....
T Consensus 11 ~~l~~isl~i--~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSM--NNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceec--CCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4578999999 999999999999999999999999985 1 1000 00 0123556655432221111
Q ss_pred ---------HHHHhhCCChhhhh------------hhhhHHHHHHHHH-----HHHHH---HHheecCCCCCCccccccC
Q 039839 94 ---------IAMDLEGSDSRERG------------EDDTTFEKQSALF-----ALAIA---DIVLINMWCHDIGREQAAN 144 (825)
Q Consensus 94 ---------l~ld~~g~~~~er~------------e~~~~~ErQRv~i-----ArALa---~VLLLDEPtsgLD~Epta~ 144 (825)
+.....|.+..... ......|+||++| |++++ ++++||||++++|.+.
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~--- 162 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTEN--- 162 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCC---
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCC---
Confidence 00001111111100 1124559999999 77777 8999999999999988
Q ss_pred HHHHHHHHHHHHHhhCC------CCcEEEEEecCCCCc
Q 039839 145 KPLLKTVFQVMMRLFSP------RKTTLLFVIRDKTKT 176 (825)
Q Consensus 145 ~~~~~~V~elL~~L~~~------~g~TIL~VTHDl~~a 176 (825)
...+.+.+.++... .+...|+|+||++.+
T Consensus 163 ---~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea 197 (218)
T 1z6g_A 163 ---QEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT 197 (218)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHH
Confidence 77777777665432 245667777776544
No 90
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.36 E-value=1.8e-12 Score=141.84 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=57.4
Q ss_pred hHHHHHHH------HHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccccc
Q 039839 111 TTFEKQSA------LFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYL 181 (825)
Q Consensus 111 ~~~ErQRv------~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~ 181 (825)
..+||||+ ++|++++ ++|||||||++||++. +..+++++.++.++ |.|+|+||||.+.. ..|
T Consensus 250 S~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~------~~~l~~~l~~~~~~-~~~vi~~sH~~~~~--~~~ 320 (339)
T 3qkt_A 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER------RRKLITIMERYLKK-IPQVILVSHDEELK--DAA 320 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHH------HHHHHHHHHHTGGG-SSEEEEEESCGGGG--GGC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEEChHHHH--HhC
Confidence 34499954 5555555 8999999999999999 99999999998766 88999999997654 489
Q ss_pred CcEEEEe
Q 039839 182 EPILRED 188 (825)
Q Consensus 182 drvlvl~ 188 (825)
|+++++.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999885
No 91
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.35 E-value=3.7e-13 Score=162.66 Aligned_cols=146 Identities=16% Similarity=0.101 Sum_probs=91.7
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc----ccceeeEE---cCCCccchhHHHHHH
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR----SQTTKGIW---IAKCVGIEPFTIAMD 97 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~----~q~~~G~~---~~~~t~~enl~l~ld 97 (825)
..++++++++ .+|++++|+||||||||||||+|+|+... ...|. ....+|++ +......+++.....
T Consensus 595 ~~vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~~~---~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~s 668 (800)
T 1wb9_A 595 PFIANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIALM---AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRS 668 (800)
T ss_dssp CCCCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHHHH---HTTTCCBSSSEEEECCCCEEEEEEC----------
T ss_pred ceeeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHHHH---HhcCcccchhcccceeHHHHHhhCCHHHHHHhhhh
Confidence 3467788876 58999999999999999999999997431 11121 11223332 222223333322111
Q ss_pred hhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHH-HHHHHHhhCCCCcEEEEEecCC
Q 039839 98 LEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 98 ~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V-~elL~~L~~~~g~TIL~VTHDl 173 (825)
.. ..+.+++..+...+ +++|||||++|+|+.. ...+ ..++..+.++.|.++||+|||+
T Consensus 669 -----------tf-~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d------~~~i~~~ll~~l~~~~g~~vl~~TH~~ 730 (800)
T 1wb9_A 669 -----------TF-MVEMTETANILHNATEYSLVLMDEIGRGTSTYD------GLSLAWACAENLANKIKALTLFATHYF 730 (800)
T ss_dssp ------------C-HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSH------HHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred -----------hh-hHHHHHHHHHHHhccCCCEEEEECCCCCCChhH------HHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence 00 11223333333334 9999999999999877 4443 6777777764489999999999
Q ss_pred CCccccccCcEEEEeCCeEEEec
Q 039839 174 TKTPLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 174 ~~a~l~~~drvlvl~~GkI~~~g 196 (825)
+.+. +|+++..+.+|++....
T Consensus 731 el~~--l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 731 ELTQ--LPEKMEGVANVHLDALE 751 (800)
T ss_dssp GGGG--HHHHSTTEEEEEEEEEE
T ss_pred HHHH--HhhhhhceEEEEEEEEE
Confidence 8775 78877667777776544
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.34 E-value=4.6e-13 Score=148.04 Aligned_cols=124 Identities=13% Similarity=0.038 Sum_probs=84.1
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------------------cceeeEEcCCCc
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------------------QTTKGIWIAKCV 87 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------------------q~~~G~~~~~~t 87 (825)
..+++.+ .+|++++|+||||||||||++.|+|+.. +..|+. +..++++++...
T Consensus 148 ~~l~l~~--~~g~vi~lvG~nGsGKTTll~~Lag~l~----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~ 221 (359)
T 2og2_A 148 TELQLGF--RKPAVIMIVGVNGGGKTTSLGKLAHRLK----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 221 (359)
T ss_dssp CSCCCCS--SSSEEEEEECCTTSCHHHHHHHHHHHHH----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS
T ss_pred CCcceec--CCCeEEEEEcCCCChHHHHHHHHHhhcc----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc
Confidence 3567777 8999999999999999999999999853 333330 123678777643
Q ss_pred -------cchhHHHHHHh---------hCCChhhhhhhhhHHHHHHHHHHHHHH---H--HheecCCCCCCccccccCHH
Q 039839 88 -------GIEPFTIAMDL---------EGSDSRERGEDDTTFEKQSALFALAIA---D--IVLINMWCHDIGREQAANKP 146 (825)
Q Consensus 88 -------~~enl~l~ld~---------~g~~~~er~e~~~~~ErQRv~iArALa---~--VLLLDEPtsgLD~Epta~~~ 146 (825)
+.+++.+.... .|.... ......++-+||++||++++ + +|+|| ||+|+|...
T Consensus 222 ~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~-~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~----- 294 (359)
T 2og2_A 222 KAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHT-NYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP----- 294 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC-CHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH-----
T ss_pred ccChhhhHHHHHHHHHhCCCHHHHHHhcCCChh-hhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH-----
Confidence 24555543211 121111 11222345699999999998 7 99999 999999765
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecC
Q 039839 147 LLKTVFQVMMRLFSPRKTTLLFVIRD 172 (825)
Q Consensus 147 ~~~~V~elL~~L~~~~g~TIL~VTHD 172 (825)
+ ++++.+..|.|+|++||.
T Consensus 295 -~------~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 295 -Q------AREFNEVVGITGLILTKL 313 (359)
T ss_dssp -H------HHHHHHHTCCCEEEEESC
T ss_pred -H------HHHHHHhcCCeEEEEecC
Confidence 2 233443348999999993
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.34 E-value=2.3e-13 Score=163.68 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=83.2
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc----cceeeEE---cCCCccchhHHHHHH
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS----QTTKGIW---IAKCVGIEPFTIAMD 97 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~----q~~~G~~---~~~~t~~enl~l~ld 97 (825)
..++++++++ |++++|+||||||||||||+|+|+.. .+..|.. ...+|++ +...++.+++...
T Consensus 566 ~~vl~disl~-----g~i~~I~GpNGsGKSTlLr~iagl~~---~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g-- 635 (765)
T 1ewq_A 566 EFVPNDLEMA-----HELVLITGPNMAGKSTFLRQTALIAL---LAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGG-- 635 (765)
T ss_dssp CCCCEEEEES-----SCEEEEESCSSSSHHHHHHHHHHHHH---HHTTTCCBSSSEEEECCCSEEEEECCC------C--
T ss_pred ceEeeeccCC-----CcEEEEECCCCCChHHHHHHHHhhhh---hcccCceeehhccceeeHHHhhccCCHHHHHHhc--
Confidence 3567777766 88999999999999999999999853 1223321 1234443 2223334443221
Q ss_pred hhCCChhhhhhhhhHHHHHHHHHHHHH--H---HHheecCC---CCCCccccccCHHHH-HHHHHHHHHhhCCCCcEEEE
Q 039839 98 LEGSDSRERGEDDTTFEKQSALFALAI--A---DIVLINMW---CHDIGREQAANKPLL-KTVFQVMMRLFSPRKTTLLF 168 (825)
Q Consensus 98 ~~g~~~~er~e~~~~~ErQRv~iArAL--a---~VLLLDEP---tsgLD~Epta~~~~~-~~V~elL~~L~~~~g~TIL~ 168 (825)
...++++++.+|+++ + +++||||| |+++|... . ..+.+.+.+ .|+|+||
T Consensus 636 ------------~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~------~~~~i~~~L~~----~g~~vl~ 693 (765)
T 1ewq_A 636 ------------KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA------IATAVAEALHE----RRAYTLF 693 (765)
T ss_dssp ------------CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH------HHHHHHHHHHH----HTCEEEE
T ss_pred ------------ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH------HHHHHHHHHHh----CCCEEEE
Confidence 135688999999998 5 99999999 88888765 4 467777765 2899999
Q ss_pred EecCCCCcc
Q 039839 169 VIRDKTKTP 177 (825)
Q Consensus 169 VTHDl~~a~ 177 (825)
+|||++.+.
T Consensus 694 ~TH~~~l~~ 702 (765)
T 1ewq_A 694 ATHYFELTA 702 (765)
T ss_dssp ECCCHHHHT
T ss_pred EeCCHHHHH
Confidence 999997664
No 94
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.33 E-value=5.6e-14 Score=149.51 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=76.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCCc------------ccceeeEEcCC------CccchhHHHHHHhhCCCh
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR------------SQTTKGIWIAK------CVGIEPFTIAMDLEGSDS 103 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~------------~q~~~G~~~~~------~t~~enl~l~ld~~g~~~ 103 (825)
.++|+||||||||||+|+|+|+.. +..|. ....+|++++. .++.+++.++....+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~----~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV----SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC----CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 589999999999999999999954 33332 12446776654 345566655432222111
Q ss_pred hhhhh-------------hhhHHHHHHHHHHHHHHHHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEe
Q 039839 104 RERGE-------------DDTTFEKQSALFALAIADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVI 170 (825)
Q Consensus 104 ~er~e-------------~~~~~ErQRv~iArALa~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VT 170 (825)
.+... .....|+||+++|||++.++++|||+++||+.. .++++.|.+. +++|+|+
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----------~~~l~~L~~~--~~vI~Vi 147 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----------LEFMKHLSKV--VNIIPVI 147 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----------HHHHHHHHTT--SEEEEEE
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----------HHHHHHHHhc--CcEEEEE
Confidence 00000 011128899999999999999999999999654 4566666653 8899999
Q ss_pred cCCCCc
Q 039839 171 RDKTKT 176 (825)
Q Consensus 171 HDl~~a 176 (825)
|..+..
T Consensus 148 ~K~D~l 153 (270)
T 3sop_A 148 AKADTM 153 (270)
T ss_dssp TTGGGS
T ss_pred eccccC
Confidence 887543
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.31 E-value=2e-13 Score=144.51 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=82.1
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcC-CCccc---ceeeEEcCCCccchhHHHHHHhhCC
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAF-RGRSQ---TTKGIWIAKCVGIEPFTIAMDLEGS 101 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~-~G~~q---~~~G~~~~~~t~~enl~l~ld~~g~ 101 (825)
.++++++ + .+|++++|+|||||||||||++|+|+. .+. .|+.. ..++++++.....- .-...|.
T Consensus 15 ~vl~~i~--i--~~g~~v~i~Gp~GsGKSTll~~l~g~~----~~~~~G~I~~~g~~i~~~~~~~~~~v----~q~~~gl 82 (261)
T 2eyu_A 15 DKVLELC--H--RKMGLILVTGPTGSGKSTTIASMIDYI----NQTKSYHIITIEDPIEYVFKHKKSIV----NQREVGE 82 (261)
T ss_dssp THHHHGG--G--CSSEEEEEECSTTCSHHHHHHHHHHHH----HHHCCCEEEEEESSCCSCCCCSSSEE----EEEEBTT
T ss_pred HHHHHHh--h--CCCCEEEEECCCCccHHHHHHHHHHhC----CCCCCCEEEEcCCcceeecCCcceee----eHHHhCC
Confidence 4677777 7 899999999999999999999999984 444 56521 11223222211000 0000111
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccc
Q 039839 102 DSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPL 178 (825)
Q Consensus 102 ~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l 178 (825)
+. .. -|++||++|. ++||+|||+ |++. ...+ ++.. .. |.+|++++|+.+..
T Consensus 83 ~~-------~~---l~~~la~aL~~~p~illlDEp~---D~~~------~~~~---l~~~-~~-g~~vl~t~H~~~~~-- 136 (261)
T 2eyu_A 83 DT-------KS---FADALRAALREDPDVIFVGEMR---DLET------VETA---LRAA-ET-GHLVFGTLHTNTAI-- 136 (261)
T ss_dssp TB-------SC---HHHHHHHHHHHCCSEEEESCCC---SHHH------HHHH---HHHH-HT-TCEEEEEECCSSHH--
T ss_pred CH-------HH---HHHHHHHHHhhCCCEEEeCCCC---CHHH------HHHH---HHHH-cc-CCEEEEEeCcchHH--
Confidence 11 11 2799999999 999999999 7665 4433 3332 33 89999999998844
Q ss_pred cccCcEEEEe
Q 039839 179 EYLEPILRED 188 (825)
Q Consensus 179 ~~~drvlvl~ 188 (825)
..|++++.|.
T Consensus 137 ~~~dri~~l~ 146 (261)
T 2eyu_A 137 DTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHhhhc
Confidence 3789887764
No 96
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.31 E-value=2.7e-15 Score=162.38 Aligned_cols=145 Identities=13% Similarity=0.052 Sum_probs=95.9
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCC---
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAK--- 85 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~--- 85 (825)
+|+++|+++.|+ ..+++++++.+ .+|++++|+||||||||||+++|+|+. .|+. ++++.+.
T Consensus 101 ~i~~~~vs~~y~----~~vL~~vsl~i--~~Ge~vaIvGpsGsGKSTLl~lL~gl~-------~G~I---~~~v~q~~~l 164 (305)
T 2v9p_A 101 FFNYQNIELITF----INALKLWLKGI--PKKNCLAFIGPPNTGKSMLCNSLIHFL-------GGSV---LSFANHKSHF 164 (305)
T ss_dssp HHHHTTCCHHHH----HHHHHHHHHTC--TTCSEEEEECSSSSSHHHHHHHHHHHH-------TCEE---ECGGGTTSGG
T ss_pred eEEEEEEEEEcC----hhhhccceEEe--cCCCEEEEECCCCCcHHHHHHHHhhhc-------CceE---EEEecCcccc
Confidence 367788888885 35899999999 999999999999999999999999983 3542 1111111
Q ss_pred --Cccch-hHHHH----------HHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHH
Q 039839 86 --CVGIE-PFTIA----------MDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLK 149 (825)
Q Consensus 86 --~t~~e-nl~l~----------ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~ 149 (825)
.++.+ |+.+. ++.. .+....+..+...|||| |||++ +||| |++||++. ..
T Consensus 165 f~~ti~~~ni~~~~~~~~~~~~~i~~~-L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~------~~ 230 (305)
T 2v9p_A 165 WLASLADTRAALVDDATHACWRYFDTY-LRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA------ED 230 (305)
T ss_dssp GGGGGTTCSCEEEEEECHHHHHHHHHT-TTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTT------CG
T ss_pred ccccHHHHhhccCccccHHHHHHHHHH-hHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH------HH
Confidence 11222 22211 1100 11111122334459999 99999 7777 99999987 43
Q ss_pred HHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeCCeEEEecCcccc
Q 039839 150 TVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 150 ~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~GkI~~~g~~~e~ 201 (825)
.+.. +||++.... .||+| +|++|+|+..|+++++
T Consensus 231 ~i~~---------------ltH~~~~~~--~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 231 RYLY---------------LHSRVQTFR--FEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp GGGG---------------GTTTEEEEE--CCCCC-CCC---CCCCCCHHHH
T ss_pred HHHH---------------HhCCHHHHH--hCCEE-EEeCCEEEEeCCHHHH
Confidence 3321 289887664 79999 9999999999987665
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.16 E-value=5.5e-11 Score=119.90 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=90.5
Q ss_pred cccccc-ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCc-cchhHHHHHHhhCCChhh
Q 039839 28 VRTTKL-NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCV-GIEPFTIAMDLEGSDSRE 105 (825)
Q Consensus 28 l~~isl-~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t-~~enl~l~ld~~g~~~~e 105 (825)
++.+-. ++ ..|++++|+||||||||||++.|++ . . |. .+.++-.... ..+.+.-.....+.+..+
T Consensus 9 LD~~l~Ggi--~~G~~~~i~G~~GsGKTtl~~~l~~-~------~-~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 75 (220)
T 2cvh_A 9 LDSLLGGGF--APGVLTQVYGPYASGKTTLALQTGL-L------S-GK---KVAYVDTEGGFSPERLVQMAETRGLNPEE 75 (220)
T ss_dssp HHHHTTSSB--CTTSEEEEECSTTSSHHHHHHHHHH-H------H-CS---EEEEEESSCCCCHHHHHHHHHTTTCCHHH
T ss_pred HHHhhcCCC--cCCEEEEEECCCCCCHHHHHHHHHH-H------c-CC---cEEEEECCCCCCHHHHHHHHHhcCCChHH
Confidence 444443 67 8899999999999999999999998 1 1 11 1222211110 111222222222322111
Q ss_pred hhh-----hhhHH--HHHHHHHHHHHH----HHheecCCCCCCccccccC--HHHHHHHHHHHHHhhCCCCcEEEEEecC
Q 039839 106 RGE-----DDTTF--EKQSALFALAIA----DIVLINMWCHDIGREQAAN--KPLLKTVFQVMMRLFSPRKTTLLFVIRD 172 (825)
Q Consensus 106 r~e-----~~~~~--ErQRv~iArALa----~VLLLDEPtsgLD~Epta~--~~~~~~V~elL~~L~~~~g~TIL~VTHD 172 (825)
..+ ..... ++|++..+++++ +++|+|||++.+|...... ......+++.++++.++.|+|+|+++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~ 155 (220)
T 2cvh_A 76 ALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQV 155 (220)
T ss_dssp HHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred HhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence 100 00111 456777777776 7999999999999754211 2334556667888876668999999998
Q ss_pred CCCc------------cccccCcEEEEeCC
Q 039839 173 KTKT------------PLEYLEPILREDIQ 190 (825)
Q Consensus 173 l~~a------------~l~~~drvlvl~~G 190 (825)
.... -...||.+++++..
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 156 HFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred EEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7421 01369999998744
No 98
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.14 E-value=7e-12 Score=138.49 Aligned_cols=119 Identities=16% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCC-CcccceeeEEcCCCccchhHHHHHHh-hC-CChhhhhhhhhHHH
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFR-GRSQTTKGIWIAKCVGIEPFTIAMDL-EG-SDSRERGEDDTTFE 114 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~-G~~q~~~G~~~~~~t~~enl~l~ld~-~g-~~~~er~e~~~~~E 114 (825)
.+|++++|+|||||||||||++|+|+. .+.. |.. -+. .. ++.+.... .+ ....+.......+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~----~~~~~~~i-~t~----ed-----~~e~~~~~~~~~v~q~~~~~~~~~~~ 186 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL----NNTKYHHI-LTI----ED-----PIEFVHESKKCLVNQREVHRDTLGFS 186 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH----HHHCCCEE-EEE----ES-----SCCSCCCCSSSEEEEEEBTTTBSCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc----cCCCCcEE-EEc----cC-----cHHhhhhccccceeeeeeccccCCHH
Confidence 677899999999999999999999984 3432 321 000 00 00000000 00 00000000101111
Q ss_pred HHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 115 KQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 115 rQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
-+||+||. ++||+|||+ |.+. ++.+.++... |.++|+++|+.+.+. .|+|++.|..
T Consensus 187 ---~~La~aL~~~PdvillDEp~---d~e~----------~~~~~~~~~~-G~~vl~t~H~~~~~~--~~dRli~l~~ 245 (356)
T 3jvv_A 187 ---EALRSALREDPDIILVGEMR---DLET----------IRLALTAAET-GHLVFGTLHTTSAAK--TIDRVVDVFP 245 (356)
T ss_dssp ---HHHHHHTTSCCSEEEESCCC---SHHH----------HHHHHHHHHT-TCEEEEEESCSSHHH--HHHHHHHTSC
T ss_pred ---HHHHHHhhhCcCEEecCCCC---CHHH----------HHHHHHHHhc-CCEEEEEEccChHHH--HHHHHhhhcC
Confidence 18999998 999999998 4343 3444444544 899999999998765 7999887743
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.13 E-value=8.4e-13 Score=133.33 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=80.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcccccCCc-CCCc-------ccceeeEEcCCCccc-hhHHHHHHhhCCCh-------
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTNFREMDA-FRGR-------SQTTKGIWIAKCVGI-EPFTIAMDLEGSDS------- 103 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~-~~G~-------~q~~~G~~~~~~t~~-enl~l~ld~~g~~~------- 103 (825)
|++++|+||||||||||+++|+|+.. .-+- ..|. ....+|+.++..... .++.. +. .+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~-~~-~~~~~~~~~~~v 77 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR-VG-LEPPPGKRECRV 77 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEE-CC-CCCCSSSCCEES
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEecccceehhhc-cc-ccCCcccccccc
Confidence 67899999999999999999999843 1110 0010 123456666543221 11100 00 00000
Q ss_pred hhhhhhhhHHHHHHH-HHHH---HHH---HHheecC--CCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEE---EEec
Q 039839 104 RERGEDDTTFEKQSA-LFAL---AIA---DIVLINM--WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLL---FVIR 171 (825)
Q Consensus 104 ~er~e~~~~~ErQRv-~iAr---ALa---~VLLLDE--PtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL---~VTH 171 (825)
.........+||+++ ++++ |++ +|||+|| |++.+|.+. ...+.+++. ..+.+|| .|+|
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~------~~~l~~~l~----~~~~~ilgti~vsh 147 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF------IQAVRQTLS----TPGTIILGTIPVPK 147 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH------HHHHHHHHH----CSSCCEEEECCCCC
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH------HHHHHHHHh----CCCcEEEEEeecCC
Confidence 111223456677766 3343 345 8999999 788777665 666655554 3223332 3348
Q ss_pred CCCCccccccCcEEEEeCCeEEEe
Q 039839 172 DKTKTPLEYLEPILREDIQKIWDA 195 (825)
Q Consensus 172 Dl~~a~l~~~drvlvl~~GkI~~~ 195 (825)
|.+ .. +++++..+++|+|+.-
T Consensus 148 ~~~-~~--~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 148 GKP-LA--LVEEIRNRKDVKVFNV 168 (189)
T ss_dssp SSC-CT--THHHHHTTCCSEEEEC
T ss_pred CCc-hH--HHHHHeecCCcEEEEe
Confidence 875 23 6888888888998864
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.12 E-value=3.2e-11 Score=130.51 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=77.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---------------------cceeeEEcCCCc------cchh
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---------------------QTTKGIWIAKCV------GIEP 91 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---------------------q~~~G~~~~~~t------~~en 91 (825)
+|++++|+||||||||||+++|+|+.. +..|+. +..++++++... +.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~----~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~ 176 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ----NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDA 176 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH----TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH----hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH
Confidence 689999999999999999999999853 333330 123677776542 3445
Q ss_pred HHHHHHh------hCCChh--hhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhC
Q 039839 92 FTIAMDL------EGSDSR--ERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS 160 (825)
Q Consensus 92 l~l~ld~------~g~~~~--er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~ 160 (825)
+.+.... ..+.+. .......++.+||++||||++ +.++| .||+.. ...+++.++++.+
T Consensus 177 v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t------~~~~~~~~~~~~~ 245 (304)
T 1rj9_A 177 VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT------GQNGLEQAKKFHE 245 (304)
T ss_dssp HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB------CTHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH------HHHHHHHHHHHHH
Confidence 5443211 011111 111223556899999999998 43333 344443 3445556666654
Q ss_pred CCCcEEEEEecCCCCc
Q 039839 161 PRKTTLLFVIRDKTKT 176 (825)
Q Consensus 161 ~~g~TIL~VTHDl~~a 176 (825)
..|.|+|++||+.+.+
T Consensus 246 ~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 246 AVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHCCSEEEEECTTSSC
T ss_pred HcCCcEEEEECCcccc
Confidence 4589999999996544
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.12 E-value=7.1e-11 Score=129.99 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=90.6
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCc-cchhHHHHHHhhCCChhhhhhh-
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCV-GIEPFTIAMDLEGSDSRERGED- 109 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t-~~enl~l~ld~~g~~~~er~e~- 109 (825)
+.++ ..|++++|+||||||||||+++|+|... .++..|......-++-.... ..+.+.......+.+.....+.
T Consensus 125 ~ggi--~~G~i~~I~G~~GsGKTTL~~~l~~~~~--~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni 200 (349)
T 1pzn_A 125 GGGI--ETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHI 200 (349)
T ss_dssp TSSE--ESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGE
T ss_pred cCCC--CCCeEEEEECCCCCCHHHHHHHHHHHhc--cchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCE
Confidence 5788 9999999999999999999999999841 13444311111112211111 1233333333333332111000
Q ss_pred ------hhHHHHHHHHHHHHHH----------HHheecCCCCCCcccccc-C-H----HHHHHHHHHHHHhhCCCCcEEE
Q 039839 110 ------DTTFEKQSALFALAIA----------DIVLINMWCHDIGREQAA-N-K----PLLKTVFQVMMRLFSPRKTTLL 167 (825)
Q Consensus 110 ------~~~~ErQRv~iArALa----------~VLLLDEPtsgLD~Epta-~-~----~~~~~V~elL~~L~~~~g~TIL 167 (825)
....++|++.++++++ ++||+|||++.+|++..+ + . .....++..|.++.++.|+|+|
T Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvi 280 (349)
T 1pzn_A 201 YVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF 280 (349)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 0223677777777765 589999999999986421 1 2 2256677777777766799999
Q ss_pred EEecCCCCccccccCcEEEEeCCeEEEecC
Q 039839 168 FVIRDKTKTPLEYLEPILREDIQKIWDAVP 197 (825)
Q Consensus 168 ~VTHDl~~a~l~~~drvlvl~~GkI~~~g~ 197 (825)
+++|+..... ..+........|++|..+.
T Consensus 281 i~~h~~~~~~-~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 281 VTNQVQARPD-AFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EEEECC----------------CCCCCTTC
T ss_pred EEcccccccc-cccCCccccCCcceEeecC
Confidence 9999885432 1223344556677776654
No 102
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.10 E-value=7.3e-13 Score=143.81 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=79.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCc-----cchhHHHHHHhhCCChhhhhhh---
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCV-----GIEPFTIAMDLEGSDSRERGED--- 109 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t-----~~enl~l~ld~~g~~~~er~e~--- 109 (825)
.+|+++||+||||||||||+++|.|+. .+..|. ..++++++... +.+|+.+. ...|.+.....+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll----~~~~G~--~~v~~v~qd~~~~~~t~~e~~~~~-~~~g~~~~~d~~~~~~ 160 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL----ARWDHH--PRVDLVTTDGFLYPNAELQRRNLM-HRKGFPESYNRRALMR 160 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH----HTSTTC--CCEEEEEGGGGBCCHHHHHHTTCT-TCTTSGGGBCHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc----cccCCC--CeEEEEecCccCCcccHHHHHHHH-HhcCCChHHHHHHHHH
Confidence 789999999999999999999999994 444453 34677765432 22332211 0112211111011
Q ss_pred ----------------hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEe
Q 039839 110 ----------------DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVI 170 (825)
Q Consensus 110 ----------------~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VT 170 (825)
....|+||+++|++++ +|||+|||+..+|... . .+.+++ + ..|+|+
T Consensus 161 ~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~------~-----~l~~~~---D-~~I~V~ 225 (312)
T 3aez_A 161 FVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT------L-----MVSDLF---D-FSLYVD 225 (312)
T ss_dssp HHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS------C-----CGGGGC---S-EEEEEE
T ss_pred HHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch------H-----HHHHhc---C-cEEEEE
Confidence 1112999999999988 9999999999998633 0 112222 3 357777
Q ss_pred cCCCCccccccCcEEEEeCC
Q 039839 171 RDKTKTPLEYLEPILREDIQ 190 (825)
Q Consensus 171 HDl~~a~l~~~drvlvl~~G 190 (825)
||.+......++|.+.+.++
T Consensus 226 a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 226 ARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp ECHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 87754321235555444333
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.09 E-value=2.9e-12 Score=138.26 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=66.5
Q ss_pred EEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc-ccccCC-cC------CCcccceeeEEcC
Q 039839 13 IDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT-NFREMD-AF------RGRSQTTKGIWIA 84 (825)
Q Consensus 13 ~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl-~~~~~~-~~------~G~~q~~~G~~~~ 84 (825)
.|+++.|+. +.+++++++.+ +|+||||+|||||+|+|+|. .++.-+ +. .+.....+++.++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I--------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL--------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIE 70 (301)
T ss_dssp -------------------CEEE--------EEEEETTSSHHHHHHHHHC------------------------CEEEEC
T ss_pred CCCcceECC---EEEEcCCCEEE--------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEec
Confidence 478889976 56888888765 99999999999999999997 432211 00 0001123455544
Q ss_pred C------CccchhHHHHHHhhCCCh-hhhhh-----------hhhHHHHHHHHHHHHHHHHheecCCCC-CCccccccCH
Q 039839 85 K------CVGIEPFTIAMDLEGSDS-RERGE-----------DDTTFEKQSALFALAIADIVLINMWCH-DIGREQAANK 145 (825)
Q Consensus 85 ~------~t~~enl~l~ld~~g~~~-~er~e-----------~~~~~ErQRv~iArALa~VLLLDEPts-gLD~Epta~~ 145 (825)
. .++.+++.+......... +...+ ....++|||+.+|||++ +|++|||+. +||+..
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~-ll~ldePt~~~Ld~~~---- 145 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC-CFYFISPFGHGLKPLD---- 145 (301)
T ss_dssp ---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE-EEEEECSSSSSCCHHH----
T ss_pred CCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh-eeeeecCcccCCCHHH----
Confidence 2 233444433211100000 00000 01112677777777774 999999987 498654
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 039839 146 PLLKTVFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 146 ~~~~~V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
. ++++++....++++|+++||+.
T Consensus 146 --~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 146 --V----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp --H----HHHHHHTTTSCEEEEECCGGGS
T ss_pred --H----HHHHHHHhcCCEEEEEEeCCCC
Confidence 2 5666666555789999999984
No 104
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=1e-11 Score=139.89 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=82.2
Q ss_pred ceEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCC-----c---cccee
Q 039839 8 CCMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG-----R---SQTTK 79 (825)
Q Consensus 8 ~~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G-----~---~q~~~ 79 (825)
.+|.+.|+++.|+. ..++.++++.+ +|+||||||||||+|+|+|..++.-+ ..| . ....+
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I--------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL--------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE--------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE--------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeE
Confidence 46999999999976 56888888775 99999999999999999998652111 000 0 01223
Q ss_pred eEEcCC------CccchhHHHHHHhhCCCh-hh----hhhhhhHHHHHHHHHHHHHH---H---HheecCCC-CCCcccc
Q 039839 80 GIWIAK------CVGIEPFTIAMDLEGSDS-RE----RGEDDTTFEKQSALFALAIA---D---IVLINMWC-HDIGREQ 141 (825)
Q Consensus 80 G~~~~~------~t~~enl~l~ld~~g~~~-~e----r~e~~~~~ErQRv~iArALa---~---VLLLDEPt-sgLD~Ep 141 (825)
|++++. .++.+++.+.....+... .. .......+++||+.||++++ + ||++|||| ++||+..
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence 444432 234555544322111000 00 01112334678888999987 5 89999999 7998554
Q ss_pred ccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCc
Q 039839 142 AANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT 176 (825)
Q Consensus 142 ta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a 176 (825)
. +++..+. . ++++|+|+|-.+..
T Consensus 158 ------~----~~lk~L~-~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 158 ------I----EFMKRLH-E-KVNIIPLIAKADTL 180 (418)
T ss_dssp ------H----HHHHHHT-T-TSEEEEEEESTTSS
T ss_pred ------H----HHHHHHh-c-cCcEEEEEEcccCc
Confidence 2 4455554 3 78999999987654
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.06 E-value=9.2e-13 Score=133.07 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=74.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCC--------ccchhHHHHHHhhCC-Chhhhhh
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKC--------VGIEPFTIAMDLEGS-DSRERGE 108 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~--------t~~enl~l~ld~~g~-~~~er~e 108 (825)
.+|+++||+||||||||||+++|.|+. ++ .++++.+.. ++.++..+.+...+. +.....+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~----~~-------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL----GE-------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH----GG-------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh----CC-------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHH
Confidence 578899999999999999999999983 22 233433221 122222111100000 0000000
Q ss_pred hhhH----------------H----HHHHHHHHHHHH---HHheecCCCCC-------CccccccCHHHHHHHHHHHHHh
Q 039839 109 DDTT----------------F----EKQSALFALAIA---DIVLINMWCHD-------IGREQAANKPLLKTVFQVMMRL 158 (825)
Q Consensus 109 ~~~~----------------~----ErQRv~iArALa---~VLLLDEPtsg-------LD~Epta~~~~~~~V~elL~~L 158 (825)
.... . ++||+.+|++++ .++++|||+++ ||... ...+.+.+.+.
T Consensus 73 ~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~------~~~~~r~l~r~ 146 (211)
T 3asz_A 73 HAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADA------DERFIRRLKRD 146 (211)
T ss_dssp HHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCH------HHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCH------HHHHHHHHHHH
Confidence 0000 0 356777888877 88999999999 88887 88888888876
Q ss_pred hCCCCcEEEEEecCC
Q 039839 159 FSPRKTTLLFVIRDK 173 (825)
Q Consensus 159 ~~~~g~TIL~VTHDl 173 (825)
..+.|.|+++++|++
T Consensus 147 ~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 147 VLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHSCCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHH
Confidence 433488999999986
No 106
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.04 E-value=1.9e-10 Score=111.79 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHHH------HHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccc
Q 039839 108 EDDTTFEKQSALFA------LAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPL 178 (825)
Q Consensus 108 e~~~~~ErQRv~iA------rALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l 178 (825)
.....+||||++|| +|++ ++|||||||++||++. +..+.+.+.++.++ |.|||+||||++..
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiiivsH~~~~~-- 126 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER------RRKLITIMERYLKK-IPQVILVSHDEELK-- 126 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH------HHHHHHHHHHTGGG-SSEEEEEESCGGGG--
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH------HHHHHHHHHHHHcc-CCEEEEEEChHHHH--
Confidence 34577899999886 6777 9999999999999999 99999999999765 89999999999544
Q ss_pred cccCcEEEEe--CCe
Q 039839 179 EYLEPILRED--IQK 191 (825)
Q Consensus 179 ~~~drvlvl~--~Gk 191 (825)
..||++++++ +|.
T Consensus 127 ~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 127 DAADHVIRISLENGS 141 (148)
T ss_dssp GGCSEEEEEEEETTE
T ss_pred HhCCEEEEEEcCCCe
Confidence 4899999994 453
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.04 E-value=2.7e-11 Score=121.25 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=73.5
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccc-ccCCcCCCcccc--------ee
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNF-REMDAFRGRSQT--------TK 79 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~-~~~~~~~G~~q~--------~~ 79 (825)
+|+++|+++.|+. .++.+ +.+ .+|..++|+|+||||||||+|.|+|..+ ....+..|.... ..
T Consensus 3 ~l~~~~~~~~~~~----~~l~~--~~~--~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~ 74 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PDIRH--LPS--DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 74 (210)
T ss_dssp --------CEEEE----SSGGG--SSC--SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred chhhhhhhheeec----CCHhH--CCC--CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence 5899999999963 34555 677 8899999999999999999999999852 111344444211 01
Q ss_pred eEE-cCCCc-----c-----ch-hHHHHHH------------------------------hhCCChh---hhhhhhhHHH
Q 039839 80 GIW-IAKCV-----G-----IE-PFTIAMD------------------------------LEGSDSR---ERGEDDTTFE 114 (825)
Q Consensus 80 G~~-~~~~t-----~-----~e-nl~l~ld------------------------------~~g~~~~---er~e~~~~~E 114 (825)
.++ .+... . +. .+...+. ..+.+.- ...+.....|
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence 111 00000 0 00 0001110 0010000 0000112237
Q ss_pred HHH-HHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCC
Q 039839 115 KQS-ALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (825)
Q Consensus 115 rQR-v~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~ 161 (825)
+|+ +..+++++ .++++||||+++|.+. ...+++.+.++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~------~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQG------VDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHGGGCSCEEEEECBTTTTBS------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeecCCCC------HHHHHHHHHHHHhh
Confidence 888 78888887 4578999999999999 99999999998765
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.03 E-value=9e-11 Score=143.24 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHH---H--HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE-
Q 039839 114 EKQSALFALAIA---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE- 187 (825)
Q Consensus 114 ErQRv~iArALa---~--VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl- 187 (825)
|+|||+||+||+ + +|||||||+|||+.. ...++++|++|.++ |.|||+||||++.+. .||+|++|
T Consensus 469 e~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~------~~~l~~~L~~L~~~-G~TvivVtHd~~~~~--~aD~ii~lg 539 (916)
T 3pih_A 469 ESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRD------TERLIKTLKKLRDL-GNTVIVVEHDEEVIR--NADHIIDIG 539 (916)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGG------HHHHHHHHHHTTTT-TCEEEEECCCHHHHH--TCSEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCccCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHH--hCCEEEEEc
Confidence 999999999999 4 999999999999999 99999999999876 999999999998775 59999999
Q ss_pred -----eCCeEEEecCcccccC
Q 039839 188 -----DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 -----~~GkI~~~g~~~e~l~ 203 (825)
+.|+|++.|++++++.
T Consensus 540 pgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 540 PGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp SSSGGGCSEEEEEECHHHHHH
T ss_pred CCcccCCCEEEEeechhhhhc
Confidence 8999999999887654
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.02 E-value=2.3e-10 Score=139.29 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 113 FEKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 113 ~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
.|+||+.||++|+ ++|||||||++||+.. ...++++|++|.+. |.|||+|+||++... .||+|++|
T Consensus 508 GEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~------~~~L~~~L~~Lr~~-G~TVIvVeHdl~~i~--~ADrIi~L 578 (972)
T 2r6f_A 508 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD------NDRLIATLKSMRDL-GNTLIVVEHDEDTML--AADYLIDI 578 (972)
T ss_dssp HHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHTT-TCEEEEECCCHHHHH--SCSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH--hCCEEEEe
Confidence 3999999999998 4999999999999999 99999999999865 999999999998764 69999999
Q ss_pred ------eCCeEEEecCcccccC
Q 039839 188 ------DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 ------~~GkI~~~g~~~e~l~ 203 (825)
++|+++..|++.+++.
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTT
T ss_pred CCCccCCCCEEEEecCHHHHHh
Confidence 7899999999888765
No 110
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.01 E-value=7.3e-10 Score=113.33 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=76.9
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCc-cchhHHHHHHhhCCChhhhhhh--
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCV-GIEPFTIAMDLEGSDSRERGED-- 109 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t-~~enl~l~ld~~g~~~~er~e~-- 109 (825)
-++ ..|++++|+||||||||||++.|+|... ..+..|......-++..... ..+.+.-.+...|....+..+.
T Consensus 19 ggi--~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 94 (243)
T 1n0w_A 19 GGI--ETGSITEMFGEFRTGKTQICHTLAVTCQ--LPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 94 (243)
T ss_dssp TSE--ETTSEEEEECCTTSSHHHHHHHHHHHTT--SCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEE
T ss_pred CCC--cCCeEEEEECCCCCcHHHHHHHHHHHHh--CchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeE
Confidence 457 8899999999999999999999999311 22221211111112211111 1111221222223332110000
Q ss_pred ----hhHHH-HHHHHHHHHHH-----HHheecCCCCCCcccccc-C-HH----HHHHHHHHHHHhhCCCCcEEEEEecCC
Q 039839 110 ----DTTFE-KQSALFALAIA-----DIVLINMWCHDIGREQAA-N-KP----LLKTVFQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 110 ----~~~~E-rQRv~iArALa-----~VLLLDEPtsgLD~Epta-~-~~----~~~~V~elL~~L~~~~g~TIL~VTHDl 173 (825)
....+ .+.+.-+..++ ++|++|||++.+|.+-.. + .. ....++..+.++.++.|+|||+++|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 95 YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 00001 11111122222 899999999999875211 1 11 245566667777666699999999976
Q ss_pred CCcc------------------ccccCcEEEEeCC
Q 039839 174 TKTP------------------LEYLEPILREDIQ 190 (825)
Q Consensus 174 ~~a~------------------l~~~drvlvl~~G 190 (825)
.... ...||.+++++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 175 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----------------------CCTTCEEEEEEEC
T ss_pred ecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3221 1158888888754
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.97 E-value=9.1e-10 Score=116.57 Aligned_cols=133 Identities=12% Similarity=0.030 Sum_probs=74.8
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc---cceeeEEcCCCccchhHHHHHHhhCC--Chhh---
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS---QTTKGIWIAKCVGIEPFTIAMDLEGS--DSRE--- 105 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~---q~~~G~~~~~~t~~enl~l~ld~~g~--~~~e--- 105 (825)
++ ..|++++|+||||||||||++.|+|..... ....|.. ...+.|+...... +.+..-+...+. ....
T Consensus 26 gl--~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g-~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NM--VAGTVGALVSPGGAGKSMLALQLAAQIAGG-PDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TE--ETTSEEEEEESTTSSHHHHHHHHHHHHHTC-CCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHHTTSCHHHHHH
T ss_pred Cc--cCCCEEEEEcCCCCCHHHHHHHHHHHHhcC-CCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHHhhcChhhhhh
Confidence 67 889999999999999999999999853210 0011110 1223444222211 111100110111 1000
Q ss_pred -------------hhhhhhHHHHHHHHHHHHHH---HHheecCCCC--CCccccccCHHHHHHHHHHHHHhhCCCCcEEE
Q 039839 106 -------------RGEDDTTFEKQSALFALAIA---DIVLINMWCH--DIGREQAANKPLLKTVFQVMMRLFSPRKTTLL 167 (825)
Q Consensus 106 -------------r~e~~~~~ErQRv~iArALa---~VLLLDEPts--gLD~Epta~~~~~~~V~elL~~L~~~~g~TIL 167 (825)
........+.|++ ++++ ++||+|||++ ++|... ......+++.|.++.++.|+|||
T Consensus 102 ~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~---~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 102 VADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENA---SGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTC---HHHHHHHHHHHHHHHHHHCCEEE
T ss_pred ccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCc---hHHHHHHHHHHHHHHHHcCCEEE
Confidence 0011122355543 5665 9999999999 887543 22347888888888755699999
Q ss_pred EEecCCCCc
Q 039839 168 FVIRDKTKT 176 (825)
Q Consensus 168 ~VTHDl~~a 176 (825)
+++|+....
T Consensus 176 ~i~H~~~~~ 184 (279)
T 1nlf_A 176 FLHHASKGA 184 (279)
T ss_dssp EEEEC----
T ss_pred EEecCCCcc
Confidence 999998544
No 112
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.93 E-value=1.5e-10 Score=120.46 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=25.4
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+++++++.+ .+|+++||+||||||||||+++|.|+
T Consensus 12 ~~~l~~isl~i--~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 12 DLGTENLYFQS--MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceeecceeccC--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999 99999999999999999999999997
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.91 E-value=9.6e-10 Score=108.34 Aligned_cols=110 Identities=11% Similarity=0.103 Sum_probs=69.1
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhh
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDT 111 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~ 111 (825)
++.+ ..|+.++|+||||||||||+++|+|.. .+..|.. .-++ +..+.......... .... .
T Consensus 32 ~~~~--~~g~~~~l~G~~G~GKTtL~~~i~~~~----~~~~g~~---~~~~----~~~~~~~~~~~~~~-----~~~~-~ 92 (180)
T 3ec2_A 32 NFNP--EEGKGLTFVGSPGVGKTHLAVATLKAI----YEKKGIR---GYFF----DTKDLIFRLKHLMD-----EGKD-T 92 (180)
T ss_dssp SCCG--GGCCEEEECCSSSSSHHHHHHHHHHHH----HHHSCCC---CCEE----EHHHHHHHHHHHHH-----HTCC-S
T ss_pred hccc--cCCCEEEEECCCCCCHHHHHHHHHHHH----HHHcCCe---EEEE----EHHHHHHHHHHHhc-----CchH-H
Confidence 3445 668999999999999999999999983 3333431 1111 11111111110000 0000 0
Q ss_pred HHHHHHHHHHHHHH--HHheecCCCC-CCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 039839 112 TFEKQSALFALAIA--DIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKT 174 (825)
Q Consensus 112 ~~ErQRv~iArALa--~VLLLDEPts-gLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~ 174 (825)
.+...+. ++||||||+. ++|+.. +..+++++.....+ |+++|++||...
T Consensus 93 -------~~~~~~~~~~llilDE~~~~~~~~~~------~~~l~~ll~~~~~~-~~~ii~tsn~~~ 144 (180)
T 3ec2_A 93 -------KFLKTVLNSPVLVLDDLGSERLSDWQ------RELISYIITYRYNN-LKSTIITTNYSL 144 (180)
T ss_dssp -------HHHHHHHTCSEEEEETCSSSCCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCCS
T ss_pred -------HHHHHhcCCCEEEEeCCCCCcCCHHH------HHHHHHHHHHHHHc-CCCEEEEcCCCh
Confidence 1111233 9999999985 888777 88889998887765 899999999883
No 114
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.90 E-value=3.3e-10 Score=138.31 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE
Q 039839 113 FEKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE 187 (825)
Q Consensus 113 ~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl 187 (825)
.|+|||.||++|+ ++|||||||++||+.. ...++++|++|.+. |.|||+|+||++... .||+|++|
T Consensus 525 GEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~------~~~L~~~L~~Lr~~-G~TVIvVeHdl~~i~--~ADrIi~L 595 (993)
T 2ygr_A 525 GEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRD------NRRLIETLTRLRDL-GNTLIVVEHDEDTIE--HADWIVDI 595 (993)
T ss_dssp HHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHH--TCSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHH------HHHHHHHHHHHHHc-CCEEEEECCCHHHHH--hCCEEEEe
Confidence 3999999999998 4999999999999999 99999999999875 999999999998764 79999999
Q ss_pred ------eCCeEEEecCcccccC
Q 039839 188 ------DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 ------~~GkI~~~g~~~e~l~ 203 (825)
++|+++..|++.++..
T Consensus 596 gp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 596 GPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CSSSGGGCCSCCEEECHHHHHH
T ss_pred cCccccCCCEEEEeeCHHHhhh
Confidence 6899999998877654
No 115
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.89 E-value=8.9e-10 Score=133.46 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHH---H--HheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEE-
Q 039839 114 EKQSALFALAIA---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRE- 187 (825)
Q Consensus 114 ErQRv~iArALa---~--VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl- 187 (825)
|+|||.||++|+ + +|||||||++||+.. ...+++++++|... |.|||+|+||++... .||+|++|
T Consensus 384 e~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~------~~~L~~~l~~L~~~-G~TVIvVeHdl~~l~--~aD~ii~lg 454 (842)
T 2vf7_A 384 ELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD------TEALLSALENLKRG-GNSLFVVEHDLDVIR--RADWLVDVG 454 (842)
T ss_dssp HHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHTT-TCEEEEECCCHHHHT--TCSEEEEEC
T ss_pred HHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH------HHHHHHHHHHHHHc-CCEEEEEcCCHHHHH--hCCEEEEeC
Confidence 999999999999 2 899999999999999 99999999999875 999999999998664 69999999
Q ss_pred -----eCCeEEEecCcccccC
Q 039839 188 -----DIQKIWDAVPKPQTLK 203 (825)
Q Consensus 188 -----~~GkI~~~g~~~e~l~ 203 (825)
++|+++..|+++++..
T Consensus 455 pgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 455 PEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp SSSGGGCCSEEEEECGGGGGG
T ss_pred CCcccCCCEEEEecCHHHHHh
Confidence 7899999999887654
No 116
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.4e-10 Score=130.64 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=89.4
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcE--EEEECCCCCChhHHHHHHHhcccccCCc---CCCcccceeeEEc
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAV--VAIMGPQSSGKSTLMNHLFHTNFREMDA---FRGRSQTTKGIWI 83 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~Gei--vaIiGpNGSGKSTLLn~L~Gl~~~~~~~---~~G~~q~~~G~~~ 83 (825)
.+++.+ ++.|++ .. +.++++.+ .+|++ ++|+||||||||||||+|+|+....... ..+.....+|+++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i--~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~ 88 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSV--SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDL 88 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSC--C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEe--cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEe
Confidence 356666 778865 34 89999999 99999 9999999999999999999985321110 1122233466665
Q ss_pred CCC------ccchhHHHHH-----------------------Hhh-CCCh------hhhhhh-h-------hHHHHHHHH
Q 039839 84 AKC------VGIEPFTIAM-----------------------DLE-GSDS------RERGED-D-------TTFEKQSAL 119 (825)
Q Consensus 84 ~~~------t~~enl~l~l-----------------------d~~-g~~~------~er~e~-~-------~~~ErQRv~ 119 (825)
+.. ++.+++.++. .-. +... ..+... + ..+...-+.
T Consensus 89 Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die 168 (427)
T 2qag_B 89 QESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV 168 (427)
T ss_dssp EC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH
T ss_pred ecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH
Confidence 532 2323322210 000 1110 000000 0 012122267
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHH-hhCCCCcEEEEEecC
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR-LFSPRKTTLLFVIRD 172 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~-L~~~~g~TIL~VTHD 172 (825)
|+++|. .||++|+|+..|.++. ...+++.+++ |.. .|+.|++++.|
T Consensus 169 ilk~L~~~~~vI~Vi~KtD~Lt~~E------~~~l~~~I~~~L~~-~gi~I~~is~~ 218 (427)
T 2qag_B 169 TMKKLDSKVNIIPIIAKADAISKSE------LTKFKIKITSELVS-NGVQIYQFPTD 218 (427)
T ss_dssp HHHHTCSCSEEEEEESCGGGSCHHH------HHHHHHHHHHHHBT-TBCCCCCCC--
T ss_pred HHHHHhhCCCEEEEEcchhccchHH------HHHHHHHHHHHHHH-cCCcEEecCCC
Confidence 888887 8999999999998777 8888888886 655 49999988865
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.85 E-value=4e-10 Score=116.25 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-----------cceeeEEcCCCccchhHHHH---HHhhCCCh
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-----------QTTKGIWIAKCVGIEPFTIA---MDLEGSDS 103 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-----------q~~~G~~~~~~t~~enl~l~---ld~~g~~~ 103 (825)
++|++++|+||||||||||+++|+|+..+. +..|.. ...++|+++....+...... .+.....+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~--~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLY--DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTT--TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCC--ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 789999999999999999999999985420 122220 12356666643221111110 00000000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH--HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcc
Q 039839 104 RERGEDDTTFEKQSALFALAIA--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP 177 (825)
Q Consensus 104 ~er~e~~~~~ErQRv~iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~ 177 (825)
...+. .++. +..++. +++||| ||+.. ...+.+.+. + ++||++++||++.+.
T Consensus 92 ~~yg~-----~~~~--v~~~l~~G~illLD-----LD~~~------~~~i~~~l~----~-~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 92 NYYGT-----SREA--IEQVLATGVDVFLD-----IDWQG------AQQIRQKMP----H-ARSIFILPPSKIELD 144 (219)
T ss_dssp EEEEE-----EHHH--HHHHHTTTCEEEEE-----CCHHH------HHHHHHHCT----T-CEEEEEECSSHHHHH
T ss_pred ccCCC-----CHHH--HHHHHhcCCeEEEE-----ECHHH------HHHHHHHcc----C-CEEEEEECCCHHHHH
Confidence 00000 0111 222333 899999 99888 888877654 3 899999999997654
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.85 E-value=2.5e-10 Score=125.95 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=85.2
Q ss_pred cccccccccccCC--CcEEEEECCCCCChhHHHHHHHhcccccCCcCC----Ccccc---eeeE--EcCCCccchhHHHH
Q 039839 27 FVRTTKLNHCGLS--YAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFR----GRSQT---TKGI--WIAKCVGIEPFTIA 95 (825)
Q Consensus 27 il~~isl~i~g~~--GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~----G~~q~---~~G~--~~~~~t~~enl~l~ 95 (825)
+...+++.+ .+ |+.++|+||||||||||+++|+|+ ..+.. |+..- ..|. .+.... ..++.++
T Consensus 157 ~~~~v~~~v--~~~lg~k~~IvG~nGsGKSTLlk~L~gl----~~~~~~~e~G~i~i~~~~~~~~~~~~~~~-~~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEA--RPFFAKTVAILGGESSGKSVLVNKLAAV----FNTTSAWEYGREFVFEKLGGDEQAMQYSD-YPQMALG 229 (365)
T ss_dssp GGGGSCTTT--GGGTCEEEEEECCTTSHHHHHHHHHHHH----TTCEEECCTTHHHHHHSSSSCTTSSCTTT-HHHHHHH
T ss_pred ChhhCCHHH--HHhhhCeEEEECCCCCCHHHHHHHHHHH----hCCCcchhhHHHHHHhhcCCCcccCChhH-HHHHHHH
Confidence 456688888 88 999999999999999999999999 45555 54210 0010 001111 1222222
Q ss_pred H--------Hhh------CCChhh-hhhhhhHHHHHHHHHHHHHH----HHheecC---CC------CCCccccccCHHH
Q 039839 96 M--------DLE------GSDSRE-RGEDDTTFEKQSALFALAIA----DIVLINM---WC------HDIGREQAANKPL 147 (825)
Q Consensus 96 l--------d~~------g~~~~e-r~e~~~~~ErQRv~iArALa----~VLLLDE---Pt------sgLD~Epta~~~~ 147 (825)
. ... +.+... ........++|+..+++++. +++|||| |+ .++|...
T Consensus 230 ~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~------ 303 (365)
T 1lw7_A 230 HQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQ------ 303 (365)
T ss_dssp HHHHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCS------
T ss_pred HHHHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHH------
Confidence 1 100 011000 00011122456677776653 8899999 65 4677777
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 148 LKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 148 ~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
+..+.+.+.++.++.+.++|+++|.-... .+++++.+++
T Consensus 304 r~~l~~~l~~l~~~~~~~ililde~~~~~--r~~~~i~~i~ 342 (365)
T 1lw7_A 304 RQQFQQLLKKLLDKYKVPYIEIESPSYLD--RYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHHHHGGGCCCEEEECSSHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCHHH--HHHHHHHHHH
Confidence 99999999888655588999999763222 2566665554
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.79 E-value=1.3e-10 Score=115.24 Aligned_cols=61 Identities=5% Similarity=-0.032 Sum_probs=40.8
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecC-CCCccccccCcEEEEeCCeEEEecCccc
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRD-KTKTPLEYLEPILREDIQKIWDAVPKPQ 200 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHD-l~~a~l~~~drvlvl~~GkI~~~g~~~e 200 (825)
+...+| .++|++. +.. ++.+..+... +.++|.+||. ++.+. +.|++|+ ++|+++..|+++.
T Consensus 120 ~~r~~d---~~ld~~~------~~~-~~~~~~~~~~-~~~ii~tsh~~~~~~e-~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 120 ALRKKD---EQMGERC------LEL-VEEFESKGID-ERYFYNTSHLQPTNLN-DIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp TTSCC-------CGGG------GHH-HHHHHHTTCC-TTSEEECSSSCGGGHH-HHHHHHH--HCGGGSCC-----
T ss_pred Hhcccc---ccCCHHH------HHH-HHHHhhcCCC-ccEEEeCCCCChhhHH-HHHHHHh--hCCcEEEeecCCc
Confidence 334556 4777776 777 8888888654 7899999998 87663 5799998 8999999987654
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.78 E-value=3e-10 Score=111.51 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=43.8
Q ss_pred EEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc
Q 039839 12 LIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR 74 (825)
Q Consensus 12 l~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~ 74 (825)
..++++.|+. ..++.++++.+ .+|++++|+||||||||||+|+|+|+ + +..|.
T Consensus 10 ~~~~~~~~g~---~~~l~~vsl~i--~~Ge~v~L~G~nGaGKTTLlr~l~g~----l-~~~G~ 62 (158)
T 1htw_A 10 DEFSMLRFGK---KFAEILLKLHT--EKAIMVYLNGDLGAGKTTLTRGMLQG----I-GHQGN 62 (158)
T ss_dssp SHHHHHHHHH---HHHHHHHHHCC--SSCEEEEEECSTTSSHHHHHHHHHHH----T-TCCSC
T ss_pred CHHHHHHHHH---HHHHhcccccc--CCCCEEEEECCCCCCHHHHHHHHHHh----C-CCCCe
Confidence 3345666755 46789999999 99999999999999999999999999 4 45555
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.75 E-value=1.4e-09 Score=120.60 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcC-CCccc-----------ceeeEEcCCCccchhHHHHHHhhCCChhh
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAF-RGRSQ-----------TTKGIWIAKCVGIEPFTIAMDLEGSDSRE 105 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~-~G~~q-----------~~~G~~~~~~t~~enl~l~ld~~g~~~~e 105 (825)
.+|++++|+|||||||||||++|.|+. .+. .|+.. ..++++.|.. .|.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~----~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------~g~~~-- 195 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI----NQTKSYHIITIEDPIEYVFKHKKSIVNQRE------------VGEDT-- 195 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH----HHHSCCEEEEEESSCCSCCCCSSSEEEEEE------------BTTTB--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc----CcCCCcEEEEecccHhhhhccCceEEEeee------------cCCCH--
Confidence 789999999999999999999999984 343 45421 0111111110 01110
Q ss_pred hhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccC
Q 039839 106 RGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLE 182 (825)
Q Consensus 106 r~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~d 182 (825)
..+ +.+|+.+|. ++|++|||+ |.+. . ...+... . .|.+++.++|+.+.. ..++
T Consensus 196 -----~~~---~~~l~~~L~~~pd~illdE~~---d~e~------~---~~~l~~~-~-~g~~vi~t~H~~~~~--~~~~ 251 (372)
T 2ewv_A 196 -----KSF---ADALRAALREDPDVIFVGEMR---DLET------V---ETALRAA-E-TGHLVFGTLHTNTAI--DTIH 251 (372)
T ss_dssp -----SCS---HHHHHHHTTSCCSEEEESCCC---SHHH------H---HHHHHHH-T-TTCEEEECCCCCSHH--HHHH
T ss_pred -----HHH---HHHHHHHhhhCcCEEEECCCC---CHHH------H---HHHHHHH-h-cCCEEEEEECcchHH--HHHH
Confidence 111 468888888 999999998 5443 3 3334333 3 388999999997643 3677
Q ss_pred cEEEE
Q 039839 183 PILRE 187 (825)
Q Consensus 183 rvlvl 187 (825)
|++.+
T Consensus 252 rl~~l 256 (372)
T 2ewv_A 252 RIVDI 256 (372)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76544
No 122
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.74 E-value=1.1e-08 Score=114.79 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=73.0
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHH--HhcccccCCcCCCcccceeeEEcCCCcc-chhHHHHHHhhCCChhhhhhh
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHL--FHTNFREMDAFRGRSQTTKGIWIAKCVG-IEPFTIAMDLEGSDSRERGED 109 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L--~Gl~~~~~~~~~G~~q~~~G~~~~~~t~-~enl~l~ld~~g~~~~er~e~ 109 (825)
-++ ..|++++|+||||||||||++.| .++ .++..|......-|+-...+. ...+.......|.+.....+.
T Consensus 173 GGI--~~Gei~~I~G~sGsGKTTLl~~la~~~~----~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vlen 246 (400)
T 3lda_A 173 GGV--ETGSITELFGEFRTGKSQLCHTLAVTCQ----IPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNN 246 (400)
T ss_dssp TSE--ETTSEEEEEESTTSSHHHHHHHHHHHTT----SCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHT
T ss_pred CCc--CCCcEEEEEcCCCCChHHHHHHHHHHhc----cCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhc
Confidence 467 88999999999999999999955 455 233333111112222111111 112222223334332211000
Q ss_pred -----hhHHHH--HHHHHHHHHH-----HHheecCCCCCCcccccc-C-HH----HHHHHHHHHHHhhCCCCcEEEEEec
Q 039839 110 -----DTTFEK--QSALFALAIA-----DIVLINMWCHDIGREQAA-N-KP----LLKTVFQVMMRLFSPRKTTLLFVIR 171 (825)
Q Consensus 110 -----~~~~Er--QRv~iArALa-----~VLLLDEPtsgLD~Epta-~-~~----~~~~V~elL~~L~~~~g~TIL~VTH 171 (825)
....+. +.+.-+..++ ++|++|+|++.++.+... + .. ....+++.|+++.++.|+|||+|+|
T Consensus 247 i~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 247 VAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred EEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 001122 2222233332 899999999999876431 1 21 2267888888888777999999999
Q ss_pred CC
Q 039839 172 DK 173 (825)
Q Consensus 172 Dl 173 (825)
..
T Consensus 327 v~ 328 (400)
T 3lda_A 327 VV 328 (400)
T ss_dssp C-
T ss_pred ec
Confidence 83
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.71 E-value=9e-09 Score=99.67 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHH
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSA 118 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv 118 (825)
+|+.++|+||||||||||+++|+|... + .|. ...++... ..... .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~----~-~g~---~~~~~~~~-~~~~~-----------------~--------- 79 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL----E-AGK---NAAYIDAA-SMPLT-----------------D--------- 79 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH----T-TTC---CEEEEETT-TSCCC-----------------G---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH----h-cCC---cEEEEcHH-HhhHH-----------------H---------
Confidence 688999999999999999999999842 2 242 12222111 10000 0
Q ss_pred HHHHHHHHHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcE-EEEEecCC
Q 039839 119 LFALAIADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LLFVIRDK 173 (825)
Q Consensus 119 ~iArALa~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~T-IL~VTHDl 173 (825)
+. .=.++||+|||+. ++... +..+++++.++..+ |.+ +|++||..
T Consensus 80 -~~-~~~~lLilDE~~~-~~~~~------~~~l~~li~~~~~~-g~~~iiits~~~ 125 (149)
T 2kjq_A 80 -AA-FEAEYLAVDQVEK-LGNEE------QALLFSIFNRFRNS-GKGFLLLGSEYT 125 (149)
T ss_dssp -GG-GGCSEEEEESTTC-CCSHH------HHHHHHHHHHHHHH-TCCEEEEEESSC
T ss_pred -HH-hCCCEEEEeCccc-cChHH------HHHHHHHHHHHHHc-CCcEEEEECCCC
Confidence 00 0018999999876 66555 88899999888765 777 88888754
No 124
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.67 E-value=1.2e-07 Score=107.27 Aligned_cols=305 Identities=14% Similarity=0.131 Sum_probs=178.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhccc---------------ccCCcCCCcccceeeEEcCCC-------ccchhHHHHHHh
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTNF---------------REMDAFRGRSQTTKGIWIAKC-------VGIEPFTIAMDL 98 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~~---------------~~~~~~~G~~q~~~G~~~~~~-------t~~enl~l~ld~ 98 (825)
-+|+|+|+.++|||||||.|+++.. ....-..|....|.|+|+... ...+...+.+|.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 3899999999999999998875310 000001122457899997532 122334556788
Q ss_pred hCCChhhhhhhhhHHHHHHHHHHHHHHHHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCC----cEEEEEecCCC
Q 039839 99 EGSDSRERGEDDTTFEKQSALFALAIADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK----TTLLFVIRDKT 174 (825)
Q Consensus 99 ~g~~~~er~e~~~~~ErQRv~iArALa~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g----~TIL~VTHDl~ 174 (825)
+|..+.+... ...-+-.+||..|+.++|.+ ....+|... ...+..+.++-+.+..+.+ -.++++.||..
T Consensus 148 EG~~d~~~~~---~~d~~ifaLa~LLSS~~IyN-~~~~i~~~~---L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvRDf~ 220 (457)
T 4ido_A 148 QGTFDSQSTL---RDSATVFALSTMISSIQVYN-LSQNVQEDD---LQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWS 220 (457)
T ss_dssp CCBTCTTCCH---HHHHHHHHHHHHHCSEEEEE-EESSCCHHH---HHHHHHHHHHHHHHSCCCSSCSEEEEEEEEETCC
T ss_pred cCCCCcccCc---cccHHHHHHHHHHhhheeec-ccccCCHHH---HHHHHHHHHHHHHHhhhcccccCCceEEEEecCC
Confidence 8876554421 11122333444445999988 222333222 2223333333222222211 26889999986
Q ss_pred Ccccc----------ccCcEEEEeCCeEEEecCccccc-CCcccccccc-ccccccccccc--------------chhhH
Q 039839 175 KTPLE----------YLEPILREDIQKIWDAVPKPQTL-KNTPLSEFFN-VEVTALSSYEE--------------KEGQF 228 (825)
Q Consensus 175 ~a~l~----------~~drvlvl~~GkI~~~g~~~e~l-~~~~l~d~f~-~~~~~l~h~~~--------------~~~~F 228 (825)
.- ++ +.++.+-...|. .++.- -...+..+|. .....+||... -..+|
T Consensus 221 l~-l~~~~g~~t~~eyLe~~L~~~~g~------~~~~~~iR~~I~~~F~~~~Cf~lp~P~~~~~~~~~~~~~l~dL~peF 293 (457)
T 4ido_A 221 FP-YEFSYGADGGAKFLEKRLKVSGNQ------HEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEF 293 (457)
T ss_dssp CT-TTSCSBHHHHHHHHHHHHCCCTTS------CHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHCTTCCCCGGGSCHHH
T ss_pred cc-ccccCCCCCHHHHHHHHhccCCCC------CHHHHHHHHHHHHhCCCCcEEEcCCCchhhhhchhhhcChhhCCHHH
Confidence 43 11 111111111121 11110 0122344442 22333443321 13579
Q ss_pred HHHHHHHhhhhcccCC--CCCccccccccccCCcccccHHHHHHHHhhcCCCCCchhhhHhhhhchHHHHHHHHHhhhhh
Q 039839 229 KEQVAELRQRFFHSIS--PGGLAGDRQGVVPASGFSFSAQQIWRVIKENKDLDLPAHKVMVATVRCEEIANDKLRRLSAD 306 (825)
Q Consensus 229 ~~~v~~Lr~~f~~~~~--~~~l~~~~~~~iP~dg~~~~~~~iW~~I~~nkdLdlP~q~~~lA~~rC~ei~~~~~~~f~~~ 306 (825)
.+++..++..+..+.. +..+ -...+....+..|+....++|.++.--.+++-=..+|+..|.....++++.|..
T Consensus 294 ~~ql~~l~~~I~~~~~l~~K~i---~G~~vtg~~L~~lv~~Yv~ain~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~- 369 (457)
T 4ido_A 294 IKNLKILIPWLLSPESLDIKEI---NGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNK- 369 (457)
T ss_dssp HHHHHHHHHHHHSTTTCCCCEE---TTEECBHHHHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcccccccccc---CCEeecHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999998874322 2221 112244456889999999999987766667777889999999999999999854
Q ss_pred hhhHHHHHHHhc-CC---cccHHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhhhH
Q 039839 307 EGWLALEEAVQE-GP---VSGFGKRLSSVLDTYLSEYDMEAVYFDEGVRNAKRKQLESKALDFVY 367 (825)
Q Consensus 307 ~~~~~l~~~~~~-g~---~~~fg~~~~~~~~~~l~~yd~~A~ry~~~V~~~kr~~L~~~i~~~l~ 367 (825)
.+.+.+.. -| .++|-..-....++|++.|+..+....+.++++-+++|+..|.....
T Consensus 370 ----~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~~~~~~L~~~l~~~~~ 430 (457)
T 4ido_A 370 ----KMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYI 430 (457)
T ss_dssp ----HHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 23333321 12 23588899999999999999777667888888888888887766643
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.61 E-value=2.1e-08 Score=109.47 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=70.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------------cceee--EEcCCC------ccch
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------------QTTKG--IWIAKC------VGIE 90 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------------q~~~G--~~~~~~------t~~e 90 (825)
.+|++++|+||||||||||+++|+|+. .+..|+. ....| ++++.. ++.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l----~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL----KNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH----HHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH----HhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 679999999999999999999999984 3444441 01223 444332 2345
Q ss_pred hHHHHHHhhCCC-----hhhhhhhhhHHHHHHHHHHHHHHHHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcE
Q 039839 91 PFTIAMDLEGSD-----SRERGEDDTTFEKQSALFALAIADIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT 165 (825)
Q Consensus 91 nl~l~ld~~g~~-----~~er~e~~~~~ErQRv~iArALa~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~T 165 (825)
++.+.... +.+ ...+.......+.+...+++++ ..|||+..||... ...+.+.++.+.+..+.|
T Consensus 203 ~l~~~~~~-~~d~vliDtaG~~~~~~~l~~eL~~i~ral----~~de~llvLDa~t------~~~~~~~~~~~~~~~~it 271 (328)
T 3e70_C 203 AIQHAKAR-GIDVVLIDTAGRSETNRNLMDEMKKIARVT----KPNLVIFVGDALA------GNAIVEQARQFNEAVKID 271 (328)
T ss_dssp HHHHHHHH-TCSEEEEEECCSCCTTTCHHHHHHHHHHHH----CCSEEEEEEEGGG------TTHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhc-cchhhHHhhccchhHHHHHHHHHHHHHHHh----cCCCCEEEEecHH------HHHHHHHHHHHHHhcCCC
Confidence 55443321 111 0001111122344444455544 5677776676444 346666666666555899
Q ss_pred EEEEecCCC
Q 039839 166 LLFVIRDKT 174 (825)
Q Consensus 166 IL~VTHDl~ 174 (825)
+|++||.-+
T Consensus 272 ~iilTKlD~ 280 (328)
T 3e70_C 272 GIILTKLDA 280 (328)
T ss_dssp EEEEECGGG
T ss_pred EEEEeCcCC
Confidence 999999543
No 126
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.54 E-value=2.9e-08 Score=114.53 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHH-----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEe
Q 039839 114 EKQSALFALAIA-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILRED 188 (825)
Q Consensus 114 ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~ 188 (825)
|+|||+||++++ ++|||||||+|||+.. ...|.++|+++.+ |.|||+||||++.+. .||++++++
T Consensus 402 ~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~------~~~i~~~l~~~~~--~~~vi~itH~~~~~~--~~d~~~~~~ 471 (517)
T 4ad8_A 402 ELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA------AIAVAEQLSRLAD--TRQVLVVTHLAQIAA--RAHHHYKVE 471 (517)
T ss_dssp HHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHH------HHHHHHHHHHHHH--HSEEEEECCCHHHHH--HSSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHHH--hCCEEEEEe
Confidence 999999999998 4999999999999999 9999999999975 799999999998775 699999996
Q ss_pred CC
Q 039839 189 IQ 190 (825)
Q Consensus 189 ~G 190 (825)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 127
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.54 E-value=5.1e-08 Score=97.11 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=61.0
Q ss_pred hhhhHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc
Q 039839 108 EDDTTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY 180 (825)
Q Consensus 108 e~~~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~ 180 (825)
.....+||||++||++++ +++|||||+++||+.. ...+.++++++.+ +.++|+|||+..... .
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~------~~~~~~~l~~~~~--~~~~ivith~~~~~~--~ 132 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDAN------VKRVADLIKESSK--ESQFIVITLRDVMMA--N 132 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH------HHHHHHHHHHHTT--TSEEEEECSCHHHHT--T
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHH------HHHHHHHHHHhcc--CCEEEEEEecHHHHH--h
Confidence 345778999999999997 6999999999999999 9999999999865 468999999976544 7
Q ss_pred cCcEEEEe
Q 039839 181 LEPILRED 188 (825)
Q Consensus 181 ~drvlvl~ 188 (825)
||+++.+.
T Consensus 133 ad~i~~v~ 140 (173)
T 3kta_B 133 ADKIIGVS 140 (173)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99998664
No 128
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.50 E-value=1.2e-08 Score=112.67 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=78.5
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-------------cceeeEEc-CCCccchhHHH
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-------------QTTKGIWI-AKCVGIEPFTI 94 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-------------q~~~G~~~-~~~t~~enl~l 94 (825)
.++++.+ .+|++++|+||||||||||+|+|.|+ +++..|.. ...+++++ +...
T Consensus 166 ~~l~~~i--~~G~~i~ivG~sGsGKSTll~~l~~~----~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~------- 232 (361)
T 2gza_A 166 SFLRRAV--QLERVIVVAGETGSGKTTLMKALMQE----IPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK------- 232 (361)
T ss_dssp HHHHHHH--HTTCCEEEEESSSSCHHHHHHHHHTT----SCTTSCEEEEESSSCCCCTTCSSEEEEECC-----------
T ss_pred HHHHHHH--hcCCEEEEECCCCCCHHHHHHHHHhc----CCCCceEEEECCccccCccccCCEEEEeecCccc-------
Confidence 7889999 99999999999999999999999999 45555541 01122222 1100
Q ss_pred HHHhhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEec
Q 039839 95 AMDLEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIR 171 (825)
Q Consensus 95 ~ld~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTH 171 (825)
.+. .....++..|+.++. +.++++|+.. ..+.+.+..+... ..|++.++|
T Consensus 233 ----~~~---------~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------------~~~~~~l~~l~~g-~~~~l~t~H 285 (361)
T 2gza_A 233 ----EEE---------NAPVTAATLLRSCLRMKPTRILLAELRG-------------GEAYDFINVAASG-HGGSITSCH 285 (361)
T ss_dssp -------------------CCHHHHHHHHTTSCCSEEEESCCCS-------------THHHHHHHHHHTT-CCSCEEEEE
T ss_pred ----ccc---------ccccCHHHHHHHHHhcCCCEEEEcCchH-------------HHHHHHHHHHhcC-CCeEEEEEC
Confidence 000 011235666777766 7899996643 2345566666543 457899999
Q ss_pred CCCCccccccCcEEEEeCCe
Q 039839 172 DKTKTPLEYLEPILREDIQK 191 (825)
Q Consensus 172 Dl~~a~l~~~drvlvl~~Gk 191 (825)
+.+.. ..++|+..+..+.
T Consensus 286 ~~~~~--~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 286 AGSCE--LTFERLALMVLQN 303 (361)
T ss_dssp CSSHH--HHHHHHHHHHTTS
T ss_pred CCCHH--HHHHHHHHHHhcc
Confidence 97643 3788988877653
No 129
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.49 E-value=1.3e-07 Score=104.56 Aligned_cols=73 Identities=10% Similarity=0.119 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHH------------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcccccc
Q 039839 114 EKQSALFALAIA------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYL 181 (825)
Q Consensus 114 ErQRv~iArALa------------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~ 181 (825)
|+||++||++|+ +||||||||++||+.. +..+++.+.++. .|+|++||+ +. .|
T Consensus 270 qqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~------~~~l~~~l~~~~----qt~i~~th~-~~----~~ 334 (359)
T 2o5v_A 270 EGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHR------RQYLLDLAASVP----QAIVTGTEL-AP----GA 334 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHH------HHHHHHHHHHSS----EEEEEESSC-CT----TC
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHH------HHHHHHHHHhcC----cEEEEEEec-cc----cC
Confidence 999999999998 7999999999999999 999999998873 699999993 33 68
Q ss_pred CcEEEEeCCeEEEecCcccc
Q 039839 182 EPILREDIQKIWDAVPKPQT 201 (825)
Q Consensus 182 drvlvl~~GkI~~~g~~~e~ 201 (825)
++++++++|+|...|++.++
T Consensus 335 ~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 335 ALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp SEEEEEETTEEEECCCTTTS
T ss_pred CEEEEEECCEEEecCCHHHH
Confidence 99999999999999987665
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.45 E-value=2.4e-07 Score=106.08 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.8
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..++++.+ ..|++++|+|+||||||||+++|+|+.
T Consensus 283 ~~~Isl~i--~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 283 DEPLNVEG--KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp BCCCCCCS--CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceeec--cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35678888 899999999999999999999999985
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.42 E-value=5.3e-07 Score=92.07 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=39.2
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCcc-------ccccCcEEEEeC
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTP-------LEYLEPILREDI 189 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~-------l~~~drvlvl~~ 189 (825)
+++++|+|+.-++..+ .....++..+.++.++.|+|+|+++|...... ...||.++.++.
T Consensus 130 ~~vviD~~~~l~~~~~----~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 130 KRVVVDSVTTLYINKP----AMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CEEEEETSGGGTTTCG----GGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CEEEECCchHhhcCCH----HHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8999999998773222 12445555555555556999999999884311 236899988863
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.38 E-value=1.1e-07 Score=107.01 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=74.3
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc-ccceeeEEcCCC----ccch----------h--
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR-SQTTKGIWIAKC----VGIE----------P-- 91 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~-~q~~~G~~~~~~----t~~e----------n-- 91 (825)
.++++.+ ..|++++|+|+||||||||||+|+|..+.. ...... .....|++.... ++.+ +
T Consensus 148 ~~i~lel--k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i-~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 148 RRLRLEL--MLIADVGLVGYPNAGKSSLLAAMTRAHPKI-APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp EEEEEEE--CCSCSEEEECCGGGCHHHHHHHHCSSCCEE-CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC
T ss_pred eeeeeEE--cCCCEEEEECCCCCcHHHHHHHHHcCCccc-cCcccceecceeeEEEecCcceEEEEeccccccchhhhhh
Confidence 4677888 889999999999999999999999984310 000000 111223322110 0000 0
Q ss_pred --HHHHHH---------hhCCChhhhhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHH
Q 039839 92 --FTIAMD---------LEGSDSRERGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR 157 (825)
Q Consensus 92 --l~l~ld---------~~g~~~~er~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~ 157 (825)
..+.-. +.+.. +........+++|++.+|++|+ .+|++ +.+|... . ..++.+.+
T Consensus 225 L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~------~-~~~~~l~~ 292 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE------E-EAVKALAD 292 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC------H-HHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh------H-HHHHHHHH
Confidence 011000 11111 2223344566999999999998 78888 6899877 5 34444444
Q ss_pred hhCCCCcEEEEEecC
Q 039839 158 LFSPRKTTLLFVIRD 172 (825)
Q Consensus 158 L~~~~g~TIL~VTHD 172 (825)
..++.+.++++||.-
T Consensus 293 ~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 293 ALAREGLAVLPVSAL 307 (416)
T ss_dssp HHHTTTSCEEECCTT
T ss_pred HHHhcCCeEEEEECC
Confidence 443447777777643
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.34 E-value=6.5e-08 Score=100.28 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHH---hcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLF---HTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~---Gl~ 64 (825)
.++++++|+||||||||||+++|+ |+.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 346799999999999999999999 984
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=3.3e-07 Score=99.29 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=35.6
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCc
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKT 176 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a 176 (825)
+|+|+|||++ ||.+. +..+++.+.+... ++++|++||+....
T Consensus 136 ~vlilDE~~~-L~~~~------~~~L~~~le~~~~--~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 136 KCVIINEANS-LTKDA------QAALRRTMEKYSK--NIRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEECTTS-SCHHH------HHHHHHHHHHSTT--TEEEEEEESCSCSS
T ss_pred eEEEEeCccc-cCHHH------HHHHHHHHHhhcC--CCEEEEEeCCHHHH
Confidence 7999999999 99887 8889998888643 78999999998543
No 135
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.31 E-value=2e-07 Score=100.34 Aligned_cols=136 Identities=10% Similarity=0.067 Sum_probs=74.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcC---CCccchhHHHHHHhhCCChhhhhhhhhHHH
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIA---KCVGIEPFTIAMDLEGSDSRERGEDDTTFE 114 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~---~~t~~enl~l~ld~~g~~~~er~e~~~~~E 114 (825)
.+|++++|+||||+||||+++.|+|. +.+..|. +++++-. .....+.+.......|.+..... . ..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~----l~~~~G~---~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~-~---~~ 171 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI----SMLEKHK---KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY-T---KE 171 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH----HHHTTCC---CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS-S---HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH----HHHhcCC---EEEEEecCcccchHHHHHHHHHHhcCCCeEecC-C---HH
Confidence 46889999999999999999999998 3344463 2333322 22233444443333343221110 0 11
Q ss_pred HHHHHHHHHHH--HHheecCCCCCCccccccCHHHHHHHHHHHHHhh--CCCCcEEEE-EecCCCCccccccCcEEEEeC
Q 039839 115 KQSALFALAIA--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF--SPRKTTLLF-VIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 115 rQRv~iArALa--~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~--~~~g~TIL~-VTHDl~~a~l~~~drvlvl~~ 189 (825)
.-+.+++++ . +++|+| |.|+|... ...+.++..-+. ...++++++ ++|+...+. ..++++..+..
T Consensus 172 ~l~~al~~~-~~~dlvIiD--T~G~~~~~------~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~-~~~~~~~~l~~ 241 (296)
T 2px0_A 172 EFQQAKELF-SEYDHVFVD--TAGRNFKD------PQYIDELKETIPFESSIQSFLVLSATAKYEDMK-HIVKRFSSVPV 241 (296)
T ss_dssp HHHHHHHHG-GGSSEEEEE--CCCCCTTS------HHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHH-HHTTTTSSSCC
T ss_pred HHHHHHHHh-cCCCEEEEe--CCCCChhh------HHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHH-HHHHHHhcCCC
Confidence 124455543 3 999999 88888665 444444333222 122333444 388764332 24665544555
Q ss_pred CeEEE
Q 039839 190 QKIWD 194 (825)
Q Consensus 190 GkI~~ 194 (825)
+.++.
T Consensus 242 ~giVl 246 (296)
T 2px0_A 242 NQYIF 246 (296)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66654
No 136
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.21 E-value=8.2e-07 Score=101.61 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=37.5
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR 74 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~ 74 (825)
.+++++++.+ .+ ++++|+|||||||||||++|+|+ +.|..|+
T Consensus 18 ~~l~~vsl~i--~~-e~~~liG~nGsGKSTLl~~l~Gl----~~p~~G~ 59 (483)
T 3euj_A 18 NGFFARTFDF--DE-LVTTLSGGNGAGKSTTMAGFVTA----LIPDLTL 59 (483)
T ss_dssp TTEEEEEEEC--CS-SEEEEECCTTSSHHHHHHHHHHH----HCCCTTT
T ss_pred ccccceEEEE--cc-ceEEEECCCCCcHHHHHHHHhcC----CCCCCCE
Confidence 4678999999 88 99999999999999999999999 5667776
No 137
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.16 E-value=7.9e-08 Score=105.21 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=45.1
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
+|+++++++.|+. ..++.++++.+ .+|++++|+||||||||||+|+|+|+.
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~--~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQT--GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGC--CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHeeCCcccccCh---HHHHHhCCccc--CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4677888888865 56889999999 999999999999999999999999984
No 138
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.16 E-value=2.9e-06 Score=91.16 Aligned_cols=109 Identities=15% Similarity=0.070 Sum_probs=61.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHH
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSA 118 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv 118 (825)
+|++++|+|+||+||||++..|+|.. .+..|+. .-.+.-.+.......+.......|.+--.........+.+|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~----~~~~~~v-~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~ 171 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY----KGKGRRP-LLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRR 171 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH----HHTTCCE-EEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH----HHcCCeE-EEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHH
Confidence 68899999999999999999999983 3333331 111111111111111111122223221110001112234677
Q ss_pred HHHHHHH---HHheecCC-CCCCccccccCHHHHHHHHHHHHHh
Q 039839 119 LFALAIA---DIVLINMW-CHDIGREQAANKPLLKTVFQVMMRL 158 (825)
Q Consensus 119 ~iArALa---~VLLLDEP-tsgLD~Epta~~~~~~~V~elL~~L 158 (825)
+++.+.. +++|+|+| +.++|... ...+.++...+
T Consensus 172 ~l~~~~~~~~D~viiDtpp~~~~d~~~------~~~l~~~~~~~ 209 (295)
T 1ls1_A 172 VEEKARLEARDLILVDTAGRLQIDEPL------MGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHTCCEEEEECCCCSSCCHHH------HHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCCccccHHH------HHHHHHHhhhc
Confidence 8888864 99999999 88888665 66666665554
No 139
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.16 E-value=1.2e-06 Score=98.48 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHH-------HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCc
Q 039839 111 TTFEKQSALFALAIA-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEP 183 (825)
Q Consensus 111 ~~~ErQRv~iArALa-------~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~dr 183 (825)
..+|||+++||++++ +++|||||+++||+.. +..+.+.+.++..+ +.++|+|||+..... .||+
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~~~-~~~~ii~th~~~~~~--~~d~ 405 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN------VQRIAAYIRRHRNP-DLQFIVISLKNTMFE--KSDA 405 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH------HHHHHHHHHHHCBT-TBEEEEECSCHHHHT--TCSE
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHH------HHHHHHHHHHHhcC-CCEEEEEECCHHHHH--hCCE
Confidence 455999999999997 6999999999999999 99999999998765 889999999975543 7999
Q ss_pred EEEEe
Q 039839 184 ILRED 188 (825)
Q Consensus 184 vlvl~ 188 (825)
++.+.
T Consensus 406 ~~~~~ 410 (430)
T 1w1w_A 406 LVGVY 410 (430)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98886
No 140
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.13 E-value=4.4e-07 Score=95.39 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=34.8
Q ss_pred ceEEEEEe-EEEe-cCccccccccccccccccCC---CcEEEEECCCCCChhHHHHHHHhc
Q 039839 8 CCMQLIDG-NGEF-NVDGLENFVRTTKLNHCGLS---YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 8 ~~Lel~nl-sk~y-~~~~l~~il~~isl~i~g~~---GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++++++|+ ++.| +. ..+++++++.+ .+ |++++|+|++||||||+.++|++.
T Consensus 16 ~~l~~~~~~~~~~~~~---~~~l~~~~~~i--~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE---QQILKKKAEEV--KPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -------------------CHHHHHHHHTT--HHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc---chhhhhhhhhh--hhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999 9999 44 57899999999 88 999999999999999999999985
No 141
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.10 E-value=1.4e-06 Score=96.13 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=25.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
..|++++|+||||||||||+|+|.|...
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 3688999999999999999999999854
No 142
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.09 E-value=1.4e-06 Score=86.77 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+|++++|+||||||||||+++|+|+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 578999999999999999999999984
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.08 E-value=3.3e-08 Score=110.42 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=49.3
Q ss_pred HHheecCCCCCCccccccCHHHHHHHHHHHHHh-hCCCCcEEEEEecCCCCccccccCcEE-EEeCC-eEEEecC
Q 039839 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-FSPRKTTLLFVIRDKTKTPLEYLEPIL-REDIQ-KIWDAVP 197 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L-~~~~g~TIL~VTHDl~~a~l~~~drvl-vl~~G-kI~~~g~ 197 (825)
+++++|||+.++|++. +...++.+..+ ... |+|++ +|++.... ..|++++ +|++| +++..++
T Consensus 143 di~ildeel~~~D~~~------~~k~~~~l~~~~~~~-g~ti~--sh~~~~~~-~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 143 DLSIIVDELLIKDAEF------VEKHLEGLRKITSRG-ANTLE--MKAKKEEQ-AIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHTTCCS-SCSSS--HHHHHHHH-HHHHHHHHHHHTTCSCGGGSC
T ss_pred hhhhchhhhHHHHHHH------HHHHHHHHHHHHHhc-CCccc--cccHHHHH-HHHHHHHHHhccCCceeecCC
Confidence 8999999999888888 88899999888 554 77754 99986552 5799998 88999 7765544
No 144
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.05 E-value=1.4e-06 Score=89.30 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=22.6
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHH-hcc
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLF-HTN 64 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~-Gl~ 64 (825)
....++++.+ .+|++++|+||||||||||+++|. |+.
T Consensus 15 ~~~~~~sl~v--~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLK--SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCE--ECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCccc--CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567889999 999999999999999999999999 984
No 145
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.05 E-value=3.4e-06 Score=93.16 Aligned_cols=68 Identities=7% Similarity=0.153 Sum_probs=56.3
Q ss_pred hHHHHHHHHH------HHHHH----HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccc
Q 039839 111 TTFEKQSALF------ALAIA----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEY 180 (825)
Q Consensus 111 ~~~ErQRv~i------ArALa----~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~ 180 (825)
..+|+||++| |++++ ++||||||+++||++. +..+.+.+.++.. +.+||+||||.+.. ..
T Consensus 282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~~--~~~vi~~th~~~~~--~~ 351 (371)
T 3auy_A 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR------RAKLAEIFRKVKS--IPQMIIITHHRELE--DV 351 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH------HHHHHHHHHHCCS--CSEEEEEESCGGGG--GG
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH------HHHHHHHHHHhcc--CCeEEEEEChHHHH--hh
Confidence 4459999855 45555 5899999999999999 9999999999753 46899999998754 48
Q ss_pred cCcEEEEe
Q 039839 181 LEPILRED 188 (825)
Q Consensus 181 ~drvlvl~ 188 (825)
||++++++
T Consensus 352 ~d~~~~l~ 359 (371)
T 3auy_A 352 ADVIINVK 359 (371)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999987
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.04 E-value=2.3e-07 Score=99.99 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=42.5
Q ss_pred eEEEEEeEEEecCcccccccccccccc-----------------ccCCCcEEEEECCCCCChhHHHHHHHhcccccCC--
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNH-----------------CGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMD-- 69 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i-----------------~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~-- 69 (825)
+|+++|+++.|+ +++.++++.+ ....|+++||+||||||||||+++|.|+ +.
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~----l~~~ 107 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQAL----LSRW 107 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHH----HTTS
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH----HhhC
Confidence 577888888883 2445555432 1267899999999999999999999998 44
Q ss_pred cCCCc
Q 039839 70 AFRGR 74 (825)
Q Consensus 70 ~~~G~ 74 (825)
+..|.
T Consensus 108 ~~~G~ 112 (308)
T 1sq5_A 108 PEHRR 112 (308)
T ss_dssp TTCCC
T ss_pred CCCCe
Confidence 55565
No 147
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.00 E-value=5.5e-06 Score=91.09 Aligned_cols=149 Identities=20% Similarity=0.177 Sum_probs=76.8
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhh-hhhhH
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERG-EDDTT 112 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~-e~~~~ 112 (825)
++ .+|+++.|.||+|||||||+..++.... .. |. ...|+-...+ .+.. .....|.+..... .....
T Consensus 57 Gl--~~G~iv~I~G~pGsGKTtLal~la~~~~----~~-g~---~vlyi~~E~~-~~~~--~a~~lG~~~~~l~i~~~~~ 123 (349)
T 2zr9_A 57 GL--PRGRVIEIYGPESSGKTTVALHAVANAQ----AA-GG---IAAFIDAEHA-LDPE--YAKKLGVDTDSLLVSQPDT 123 (349)
T ss_dssp SE--ETTSEEEEEESTTSSHHHHHHHHHHHHH----HT-TC---CEEEEESSCC-CCHH--HHHHTTCCGGGCEEECCSS
T ss_pred Cc--cCCeEEEEECCCCCCHHHHHHHHHHHHH----hC-CC---eEEEEECCCC-cCHH--HHHHcCCCHHHeEEecCCC
Confidence 56 7899999999999999999888775421 11 21 1222211111 1111 1122233211100 00001
Q ss_pred HHHHHHHHHHHHH-----HHheecCCCCCCcccccc---C-H---HHHHHHHHHHHHh---hCCCCcEEEEEecCCCCc-
Q 039839 113 FEKQSALFALAIA-----DIVLINMWCHDIGREQAA---N-K---PLLKTVFQVMMRL---FSPRKTTLLFVIRDKTKT- 176 (825)
Q Consensus 113 ~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta---~-~---~~~~~V~elL~~L---~~~~g~TIL~VTHDl~~a- 176 (825)
-.+-+.++++++ +++|+|++++-+...... + . ...+.+.+.+++| .++.++|||+++|-....
T Consensus 124 -~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~ 202 (349)
T 2zr9_A 124 -GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIG 202 (349)
T ss_dssp -HHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred -HHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Confidence 123344566665 899999999887311111 1 0 1112344444444 344599999999965310
Q ss_pred --------------cccccCcEEEEeCCeEEEec
Q 039839 177 --------------PLEYLEPILREDIQKIWDAV 196 (825)
Q Consensus 177 --------------~l~~~drvlvl~~GkI~~~g 196 (825)
-..+|+.++.+..+++...|
T Consensus 203 ~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 203 VMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp -------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred cccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 01357877777766555443
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.94 E-value=1.7e-05 Score=90.01 Aligned_cols=155 Identities=6% Similarity=0.041 Sum_probs=88.7
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHH--HHhhCCCh-
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIA--MDLEGSDS- 103 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~--ld~~g~~~- 103 (825)
.++.+..++ .+|+++.|.|++|+|||||+..|++... +..|. .+.|+-...+. +.+..- ....|.+.
T Consensus 192 ~LD~~~gGl--~~G~liiI~G~pG~GKTtl~l~ia~~~~----~~~g~---~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~ 261 (454)
T 2r6a_A 192 ELDRMTSGF--QRSDLIIVAARPSVGKTAFALNIAQNVA----TKTNE---NVAIFSLEMSA-QQLVMRMLCAEGNINAQ 261 (454)
T ss_dssp HHHHHHSSB--CTTCEEEEECCTTSCHHHHHHHHHHHHH----HHSSC---CEEEEESSSCH-HHHHHHHHHHHHTCCHH
T ss_pred HHHhhcCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHH----HhCCC---cEEEEECCCCH-HHHHHHHHHHHcCCCHH
Confidence 455666678 8999999999999999999999988621 11232 12222111111 111100 00111111
Q ss_pred ---------hhhhhh---h---------------hHHHHHHHHHHHHHH-----HHheecCCCCCCcccc-ccC-HHHHH
Q 039839 104 ---------RERGED---D---------------TTFEKQSALFALAIA-----DIVLINMWCHDIGREQ-AAN-KPLLK 149 (825)
Q Consensus 104 ---------~er~e~---~---------------~~~ErQRv~iArALa-----~VLLLDEPtsgLD~Ep-ta~-~~~~~ 149 (825)
.+.... . .. --+....++.+. +++++|+++.-.+... ..+ .....
T Consensus 262 ~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s-~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~ 340 (454)
T 2r6a_A 262 NLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIR-VSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVS 340 (454)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCC-HHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC-HHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHH
Confidence 000000 0 00 112234556665 8999999998765432 112 45567
Q ss_pred HHHHHHHHhhCCCCcEEEEEec---------C--CC--------CccccccCcEEEEeCCeEE
Q 039839 150 TVFQVMMRLFSPRKTTLLFVIR---------D--KT--------KTPLEYLEPILREDIQKIW 193 (825)
Q Consensus 150 ~V~elL~~L~~~~g~TIL~VTH---------D--l~--------~a~l~~~drvlvl~~GkI~ 193 (825)
.+...|+.++++.|++||+++| | +. .. ...||.|++++.++..
T Consensus 341 ~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~i-e~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 341 EISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSI-EQDADIVAFLYRDDYY 402 (454)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSH-HHHCSEEEEEEETTC-
T ss_pred HHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchh-HhhCCEEEEEeccccc
Confidence 8888888888777999999999 3 22 12 1359999999876653
No 149
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.93 E-value=3.8e-06 Score=84.81 Aligned_cols=27 Identities=41% Similarity=0.405 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+|++++|+||||||||||+++|+|+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999994
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.91 E-value=6.4e-06 Score=89.03 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=27.6
Q ss_pred cccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 31 TKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 31 isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
+++.. ..|++++|+|||||||||+++.|+|..
T Consensus 97 ~~~~~--~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 97 LNVPP--EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCS--SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcccC--CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34444 788999999999999999999999983
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.89 E-value=4.8e-06 Score=82.58 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
|++++|+||||||||||+++|.|+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999985
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.86 E-value=1.4e-05 Score=78.20 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=27.9
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++++.+ .+| +++|+||||||||||+++|.++.
T Consensus 18 ~~~~~~~--~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPF--SKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEEC--CSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEec--CCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666 566 99999999999999999999983
No 153
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.84 E-value=5.4e-06 Score=83.40 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+|++++|+||||||||||+|+|.|+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999999974
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.80 E-value=8.5e-06 Score=80.20 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=24.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|++++|+||||||||||+++|+|.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 67889999999999999999999997
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.76 E-value=1.1e-05 Score=79.91 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHh
Q 039839 117 SALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 158 (825)
Q Consensus 117 Rv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L 158 (825)
.+.+|++++ +++++| |+++|.+. ...+++.+.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~------v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTN------VEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTT------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCC------HHHHHHHHHHH
Confidence 466788888 788999 99999999 88998888653
No 156
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.75 E-value=8.9e-06 Score=81.46 Aligned_cols=45 Identities=24% Similarity=0.114 Sum_probs=32.3
Q ss_pred EeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 14 DGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 14 nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|++..++. ........+.. .+|++++|+||||||||||+++|+|.
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~--~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 4 NIKWHECS---VEKVDRQRLLD--QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp ------CC---CCHHHHHHHHT--SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcccccc---cCHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45555543 33455666666 89999999999999999999999998
No 157
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.75 E-value=1e-05 Score=88.84 Aligned_cols=120 Identities=23% Similarity=0.200 Sum_probs=66.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcc-cceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHH
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRS-QTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSA 118 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~-q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv 118 (825)
.-.++|+|++|+|||||+|.|.|..+.. +...+.. ....+.+.... ......|..|..... ......+++|++
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~-~~~~~~t~~~~~~~~~~~~----~~~~l~Dt~G~~~~~-~~~~~~~~~~~~ 240 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEI-ASYPFTTRGINVGQFEDGY----FRYQIIDTPGLLDRP-ISERNEIEKQAI 240 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEE-ECCTTCSSCEEEEEEEETT----EEEEEEECTTTSSSC-STTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-CCCCCeeeceeEEEEEecC----ceEEEEeCCCccccc-hhhhhHHHHHHH
Confidence 3479999999999999999999974311 1111110 01122221110 001112323322111 112234566655
Q ss_pred HHHHHH-H--HHheec-CCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEe--cCCC
Q 039839 119 LFALAI-A--DIVLIN-MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVI--RDKT 174 (825)
Q Consensus 119 ~iArAL-a--~VLLLD-EPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VT--HDl~ 174 (825)
. +.+. + -++++| ++..+++.+. ...+++.+.++.. +..+|+|. ||+.
T Consensus 241 ~-~~~~~ad~illV~D~s~~~~~~~~~------~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 241 L-ALRYLGNLIIYIFDPSEHCGFPLEE------QIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp H-GGGGTCSEEEEEECTTCTTSSCHHH------HHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred H-HHHhcCCEEEEEEeCCccccCCHHH------HHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 4 3332 2 567889 7777777776 7777777777653 67788888 8874
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=1.3e-05 Score=79.12 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..|++++|+||||||||||+++|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999999974
No 159
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.71 E-value=3.2e-06 Score=95.26 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=28.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR 74 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~ 74 (825)
.+|++++|+|||||||||||++|.|. +.+..|+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~----l~~~~g~ 197 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE----LNSSERN 197 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH----HCCTTSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh----cCCCCCE
Confidence 67889999999999999999999998 4455565
No 160
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.68 E-value=1.7e-05 Score=85.20 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
..|++++|+||||||||||||+|.|+..
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 5688999999999999999999999954
No 161
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.66 E-value=2.3e-06 Score=88.74 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=36.0
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCc
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGR 74 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~ 74 (825)
.|++.|+...|+. ++.+ .. ++++|+|||||||||||++|+|+ +.|..|.
T Consensus 9 ~l~l~~~~~~~~~----------~~~~--~~-~~~~i~GpnGsGKSTll~~i~g~----~~~~~G~ 57 (227)
T 1qhl_A 9 SLTLINWNGFFAR----------TFDL--DE-LVTTLSGGNGAGKSTTMAAFVTA----LIPDLTL 57 (227)
T ss_dssp EEEEEEETTEEEE----------EECH--HH-HHHHHHSCCSHHHHHHHHHHHHH----HSCCTTT
T ss_pred EEEEEeeecccCC----------EEEE--cC-cEEEEECCCCCCHHHHHHHHhcc----cccCCCe
Confidence 5778887655532 2233 22 58999999999999999999999 5566665
No 162
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.65 E-value=0.00017 Score=72.04 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|+||+||||||+.++|.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999985
No 163
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.62 E-value=2.6e-05 Score=77.40 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+|++++|+||||||||||+++|.|..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999999984
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.61 E-value=2.6e-05 Score=78.05 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|++++|+||||||||||+++|+|.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999999997
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.59 E-value=0.00011 Score=81.11 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=65.8
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhh-hhhhhH
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRER-GEDDTT 112 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er-~e~~~~ 112 (825)
++ .+|+++.|+||+|||||||+..+++.. .+..|. +-|+-..... ... .....|.+.... ......
T Consensus 57 Gi--~~G~i~~I~GppGsGKSTLal~la~~~----~~~gg~----VlyId~E~s~-~~~--ra~rlgv~~~~l~i~~~~~ 123 (356)
T 3hr8_A 57 GY--PRGRIVEIFGQESSGKTTLALHAIAEA----QKMGGV----AAFIDAEHAL-DPV--YAKNLGVDLKSLLISQPDH 123 (356)
T ss_dssp SE--ETTEEEEEEESTTSSHHHHHHHHHHHH----HHTTCC----EEEEESSCCC-CHH--HHHHHTCCGGGCEEECCSS
T ss_pred Cc--cCCcEEEEECCCCCCHHHHHHHHHHHH----HhcCCe----EEEEeccccc-chH--HHHHcCCchhhhhhhhccC
Confidence 56 789999999999999999999998862 222222 2222211111 111 111223221110 000001
Q ss_pred HHHHHHHHHHHHH-----HHheecCCCCCCccccccC----------HHHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 039839 113 FEKQSALFALAIA-----DIVLINMWCHDIGREQAAN----------KPLLKTVFQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 113 ~ErQRv~iArALa-----~VLLLDEPtsgLD~Epta~----------~~~~~~V~elL~~L~~~~g~TIL~VTHDl 173 (825)
.+ +.+.+++.++ +++++|.-..=.......+ ......++..|..+.++.+++||+|.|-.
T Consensus 124 ~e-~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~ 198 (356)
T 3hr8_A 124 GE-QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIR 198 (356)
T ss_dssp HH-HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESS
T ss_pred HH-HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeee
Confidence 11 2233444443 8999996443332111111 12234455666777777799999998873
No 166
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.57 E-value=0.00013 Score=79.10 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=24.4
Q ss_pred cCCCc--EEEEECCCCCChhHHHHHHHhcc
Q 039839 37 GLSYA--VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 37 g~~Ge--ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
|..+. .+.|.||+|+|||||++.+++..
T Consensus 39 ~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 39 NPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp STTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45566 89999999999999999999873
No 167
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.55 E-value=1.8e-05 Score=91.27 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=32.0
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
++..+++.+ ..|++++|+||||||||||||+|+|+.
T Consensus 249 ~l~~l~~~v--~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAI--EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHH--HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHH--hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456677777 889999999999999999999999994
No 168
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=4e-05 Score=76.60 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=24.1
Q ss_pred ccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 24 LENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 24 l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
....++++++.. .+|.+++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~--~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQS--NAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEec--CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 466889999999 99999999999999999999999976
No 169
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.46 E-value=5.8e-05 Score=76.20 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+|++++|+||||||||||++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 568899999999999999999999984
No 170
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.46 E-value=6.3e-05 Score=80.88 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
..|++++|+||||||||||+|+|. +..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 568899999999999999999999 754
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.46 E-value=4.1e-05 Score=78.55 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|++++|.|+||||||||+++|.|.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 78899999999999999999999997
No 172
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.46 E-value=1.8e-05 Score=85.57 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.6
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
+.+ .+|++++|+||||+|||||+|+|.|...
T Consensus 168 ~~~--~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 168 IPH--FQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGG--GTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred Hhh--cCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 445 6799999999999999999999999853
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.43 E-value=7.8e-05 Score=81.68 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=26.4
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
..+.++++.+ + .++|+|++|||||||||.|.|..+
T Consensus 25 ~~l~~i~~~l--p---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 25 SALPTLWDSL--P---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CCC----CCC--C---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred cccccccccC--C---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 4666777776 4 799999999999999999999653
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.43 E-value=7.2e-05 Score=85.57 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=58.6
Q ss_pred EEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHHHHH
Q 039839 43 VAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSALFAL 122 (825)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~iAr 122 (825)
+.|+||+|+|||||+++|+|.. + .. .. . +. ..+... .+.| ...+++|..|++
T Consensus 52 vLL~GppGtGKT~Laraia~~~----~----~~--f~-~-is---~~~~~~---~~~g----------~~~~~~r~lf~~ 103 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA----N----VP--FF-H-IS---GSDFVE---LFVG----------VGAARVRDLFAQ 103 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH----T----CC--EE-E-EE---GGGTTT---CCTT----------HHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc----C----CC--ee-e-CC---HHHHHH---HHhc----------ccHHHHHHHHHH
Confidence 7899999999999999999962 1 10 00 0 00 000000 0011 123567778888
Q ss_pred HHH---HHheecCCCCCCcccc--ccC--HHHHHHHHHHHHHhh---CCCCcEEEEEecCCCC
Q 039839 123 AIA---DIVLINMWCHDIGREQ--AAN--KPLLKTVFQVMMRLF---SPRKTTLLFVIRDKTK 175 (825)
Q Consensus 123 ALa---~VLLLDEPtsgLD~Ep--ta~--~~~~~~V~elL~~L~---~~~g~TIL~VTHDl~~ 175 (825)
|.. .||++||+..=-.... +.+ ......+.+++..+- ...+..||.+||+.+.
T Consensus 104 A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp HHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 876 6999999843111000 001 122445555555442 2347889999998743
No 175
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.37 E-value=0.00011 Score=81.21 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=35.0
Q ss_pred EEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 11 QLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 11 el~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+..++.. +. ..+.++++.+ .+| +++|+|||||||||||++|.++
T Consensus 5 ~i~~L~l~-~~----~~~~~~~~~~--~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 5 RLSALSTL-NY----RNLAPGTLNF--PEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CEEEEEEE-SB----TTCCSEEEEC--CSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEeEEEEe-Cc----cceeeeEEEE--cCC-eEEEECCCCCChhHHHHHHHHh
Confidence 45555554 11 2346778888 788 9999999999999999999997
No 176
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.35 E-value=9.5e-05 Score=71.80 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|++++|+||||||||||++.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56889999999999999999999986
No 177
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.31 E-value=8.6e-05 Score=71.74 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|.+++|+||||||||||+++|++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999997
No 178
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.31 E-value=0.00011 Score=76.75 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHH---hcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLF---HTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~---Gl~ 64 (825)
.+|++++|+||||||||||+++|+ |+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 568899999999999999999999 874
No 179
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.29 E-value=0.00011 Score=82.53 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=34.2
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.|++.|+ +.|+. .. .+.+ ..|++++|+|||||||||||++|.|+.
T Consensus 6 ~l~~~~~-~~~~~---~~-----~~~~--~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 6 GLELSNF-KSYRG---VT-----KVGF--GESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEESC-SSCCS---EE-----EEEC--TTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEeCE-EEECC---ce-----eEEe--cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4777787 66754 11 1234 457899999999999999999999983
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.26 E-value=8.9e-05 Score=82.39 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=33.8
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..++.++++++ ..|++++|+||||||||||+++|+|.
T Consensus 156 ~~~l~~~~~~i--~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNI--PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHCC--TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccccc--CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35677888999 99999999999999999999999996
No 181
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=0.00015 Score=73.64 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=25.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..|++++|+||||||||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 788999999999999999999999874
No 182
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.24 E-value=0.00011 Score=77.78 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=30.3
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++.++++.. ..| ++|+||||||||||+++|+|.
T Consensus 34 ~~l~~~~l~~--~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLVT--PAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCCC--CSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCC--CCe--EEEECCCCCcHHHHHHHHHHH
Confidence 4567778888 788 999999999999999999998
No 183
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.23 E-value=0.00011 Score=73.75 Aligned_cols=26 Identities=42% Similarity=0.468 Sum_probs=24.7
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|.+++|+|+||||||||++.|.|.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999999998
No 184
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.21 E-value=0.00018 Score=86.90 Aligned_cols=126 Identities=10% Similarity=0.035 Sum_probs=69.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHH-HHHHhhCCC-----h---h-h--
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFT-IAMDLEGSD-----S---R-E-- 105 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~-l~ld~~g~~-----~---~-e-- 105 (825)
..|+.+.|+||+||||||++.++.+... ...|.. ..+.++.+.......+. .+....+.. + + +
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~----~~~~~g-~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~ 181 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDE----MPHLEN-TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK 181 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHH----CGGGGT-CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhc----cccCCC-ceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc
Confidence 4677999999999999999998876521 112111 11223222211111111 011111110 0 0 0
Q ss_pred -----hhhhhhHHHHHHHHHHHHHH---HHheecCCCC-CCccccccCHHHHHHHHHHHHHhhCCCCcEEEE-EecCCCC
Q 039839 106 -----RGEDDTTFEKQSALFALAIA---DIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLLF-VIRDKTK 175 (825)
Q Consensus 106 -----r~e~~~~~ErQRv~iArALa---~VLLLDEPts-gLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~-VTHDl~~ 175 (825)
........+.+|.+++..+. ++||+||+.. +||... ...+++.+...... ..+|++ +|||.+.
T Consensus 182 ~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~------~~~~l~~l~~~~~~-~~iIl~SAT~~~~~ 254 (773)
T 2xau_A 182 TSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDI------LMGLLKQVVKRRPD-LKIIIMSATLDAEK 254 (773)
T ss_dssp CCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHH------HHHHHHHHHHHCTT-CEEEEEESCSCCHH
T ss_pred cCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHH------HHHHHHHHHHhCCC-ceEEEEeccccHHH
Confidence 00111344888888887666 9999999985 777655 55555555555433 556666 4998743
No 185
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=1.8e-05 Score=85.96 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=37.3
Q ss_pred EEEEEeEEEecCccccccccccccccc-----cCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHC-----GLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~-----g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
++..+++..|+. ..++.++++.+. |...+.++|+||||+|||||+++|+|..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455566666655 345666666651 1223789999999999999999999983
No 186
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.13 E-value=8.3e-05 Score=80.88 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=22.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
++||+||||||||||+++|.|+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999983
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.06 E-value=0.00015 Score=78.37 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=24.4
Q ss_pred cCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 37 GLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 37 g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+..+..+.|.||+|+|||||++.+++.
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999987
No 188
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.06 E-value=0.00099 Score=72.72 Aligned_cols=135 Identities=10% Similarity=0.035 Sum_probs=68.1
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCcc-chhHHHHHHhhCCChhhhhh----
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVG-IEPFTIAMDLEGSDSRERGE---- 108 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~-~enl~l~ld~~g~~~~er~e---- 108 (825)
++ ..|+++.|.||+|||||||+..++.... ++...|.......|+-...+. .+.+.-.+...|.+..+..+
T Consensus 118 Gl--~~G~i~~I~G~~GsGKTtla~~la~~~~--~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~ 193 (343)
T 1v5w_A 118 GI--ESMAITEAFGEFRTGKTQLSHTLCVTAQ--LPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLY 193 (343)
T ss_dssp SB--CSSEEEEEECCTTCTHHHHHHHHHHHTT--SCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred CC--CCCeEEEEECCCCCCHHHHHHHHHHHHh--cccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeE
Confidence 56 7899999999999999999999887521 111111111122233222211 12222222223433211000
Q ss_pred ----hhhHHHHHHHHHHHHH-----H--HHheecCCCCCCccccc-cC-HH----HHHHHHHHHHHhhCCCCcEEEEEec
Q 039839 109 ----DDTTFEKQSALFALAI-----A--DIVLINMWCHDIGREQA-AN-KP----LLKTVFQVMMRLFSPRKTTLLFVIR 171 (825)
Q Consensus 109 ----~~~~~ErQRv~iArAL-----a--~VLLLDEPtsgLD~Ept-a~-~~----~~~~V~elL~~L~~~~g~TIL~VTH 171 (825)
.... ..+.+..++.+ . +++++|..+.-...+-. .+ +. ....++..|+.+.++.+++||++.|
T Consensus 194 ~~~~~~e~-~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 194 ARAYTSEH-QMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp EECCSTTH-HHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred eecCCHHH-HHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 0011 11112122222 1 79999977665433211 01 11 2456666677777777999999998
Q ss_pred CC
Q 039839 172 DK 173 (825)
Q Consensus 172 Dl 173 (825)
-.
T Consensus 273 ~~ 274 (343)
T 1v5w_A 273 MT 274 (343)
T ss_dssp C-
T ss_pred ce
Confidence 65
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.05 E-value=0.00057 Score=77.22 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.+++++|||||||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999987
No 190
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.03 E-value=0.00026 Score=76.46 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhcc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
++++|+|+||||||||||+|.|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 479999999999999999999984
No 191
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.03 E-value=0.00024 Score=73.41 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=29.8
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++.++++.. ..| +.|+||||||||||+++|+|.
T Consensus 39 ~~~~~~~~~~--~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 39 SRFHEMGARI--PKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHTTCCC--CSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCC--CCe--EEEECCCCCCHHHHHHHHHHH
Confidence 4567777777 777 899999999999999999998
No 192
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.03 E-value=0.00012 Score=84.48 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
.++..+.|.|++||||||+||.|.+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998865
No 193
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.98 E-value=0.00043 Score=67.09 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=23.9
Q ss_pred cCCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 37 GLSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 37 g~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
|.+|..++|+|++|+|||||+|.|.|..+
T Consensus 1 ~~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 1 GSHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46778999999999999999999999753
No 194
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.98 E-value=0.00037 Score=68.07 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=24.0
Q ss_pred cCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 37 GLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 37 g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|.+|.+++|+|++||||||+++.|.+.
T Consensus 2 ~~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 2 HMRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999987
No 195
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.0001 Score=72.94 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=22.3
Q ss_pred cEEEEECCCCCChhHHHHHHHhcc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
++++|+|+||||||||++.|.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999993
No 196
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.95 E-value=0.00029 Score=73.99 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=28.8
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++.++++.+ ..| ++|+||||||||||+++|+|.
T Consensus 63 ~~l~~~~~~~--~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 63 SRFHEMGARI--PKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHTTCCC--CCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCC--CCe--EEEECCCcChHHHHHHHHHHH
Confidence 3456667777 667 899999999999999999998
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.88 E-value=0.00045 Score=69.07 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|.+++|+|++|||||||++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 66779999999999999999999997
No 198
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.87 E-value=0.00047 Score=68.16 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=22.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+||||||||++.|.|..+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999864
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.86 E-value=0.00051 Score=69.25 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.+++|+||+||||||++++|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999886
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.85 E-value=7e-05 Score=81.77 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=38.6
Q ss_pred EEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 10 MQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
++..+..+.|+. ..++.++++.. .+|.+++|+|++|+|||||++.|+|..
T Consensus 31 ie~~~~~~~~~~---~~~~~~l~~~~--~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 31 VESRHPRHQALS---TQLLDAIMPYC--GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHCCCHHHHHHH---HHHHHHHGGGC--SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcCCchhhhHH---HHHHHhCCccc--CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344444444443 45677778877 889999999999999999999999873
No 201
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.83 E-value=0.00039 Score=71.20 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=22.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|++|+|||||+|.|.|..+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999754
No 202
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.77 E-value=0.00031 Score=81.68 Aligned_cols=27 Identities=30% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+|++++|+|+||||||||+++|+|..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 689999999999999999999999983
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.77 E-value=0.0024 Score=69.00 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=67.9
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCcc-chhHHHHHHhhCCChhhhhhh---
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVG-IEPFTIAMDLEGSDSRERGED--- 109 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~-~enl~l~ld~~g~~~~er~e~--- 109 (825)
++ ..|+++.|.||+|||||||+..++.... .+...|.......|+-...+. .+.+.-.+...|.+..+..+.
T Consensus 103 Gl--~~G~i~~i~G~~GsGKT~la~~la~~~~--~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~ 178 (324)
T 2z43_A 103 GI--ETRTMTEFFGEFGSGKTQLCHQLSVNVQ--LPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYY 178 (324)
T ss_dssp SE--ETTSEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred CC--CCCcEEEEECCCCCCHhHHHHHHHHHHh--cccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEE
Confidence 56 7899999999999999999998876421 111111111122233222111 122222223334432210000
Q ss_pred --hhHH--HHHHHHHHHHHH------HHheecCCCCCCccccc-cC-H----HHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 039839 110 --DTTF--EKQSALFALAIA------DIVLINMWCHDIGREQA-AN-K----PLLKTVFQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 110 --~~~~--ErQRv~iArALa------~VLLLDEPtsgLD~Ept-a~-~----~~~~~V~elL~~L~~~~g~TIL~VTHDl 173 (825)
.... +.+.+..++.++ +++|+|..+.-...+.. .+ . .....++..|+.+.++.+++||++.|-.
T Consensus 179 ~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 179 IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 0011 122333333332 79999976654432211 01 1 1245566666777666789999998854
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.77 E-value=0.0011 Score=74.88 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=59.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHHhhCCChhhhhhhhhHHHHHHHH
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMDLEGSDSRERGEDDTTFEKQSAL 119 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld~~g~~~~er~e~~~~~ErQRv~ 119 (825)
+..+.|.||+|+|||||+++|++.... ...+. .+-++ .. .+ +.-++.+ ...... .-.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~---~~~~~---~v~~v-~~---~~---~~~~~~~---~~~~~~-------~~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDL---RVMYI-TS---EK---FLNDLVD---SMKEGK-------LNE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH---HCCSS---CEEEE-EH---HH---HHHHHHH---HHHTTC-------HHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH---hCCCC---eEEEe-eH---HH---HHHHHHH---HHHccc-------HHH
Confidence 568999999999999999999987311 00011 11111 10 00 1101000 000000 011
Q ss_pred HHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 039839 120 FALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 120 iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl 173 (825)
+...+. ++|++||+..-.+.+ ..+..++..+..+... |+.+|++||+.
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~-----~~q~~l~~~l~~l~~~-~~~iIitt~~~ 237 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKT-----GVQTELFHTFNELHDS-GKQIVICSDRE 237 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCH-----HHHHHHHHHHHHHHTT-TCEEEEEESSC
T ss_pred HHHHhcCCCCEEEEeCcccccCCh-----HHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 222222 799999875544431 3478888888888765 88999999985
No 205
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.75 E-value=0.00059 Score=74.05 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=30.5
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++++.. .+|++++|+|+||+||||++..|++..
T Consensus 96 ~~l~~~~--~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKE--NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCT--TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccC--CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677777 889999999999999999999999983
No 206
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.69 E-value=0.00071 Score=67.24 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|+|+|||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999984
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.64 E-value=0.001 Score=64.00 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.+|+|||||||||||.+|.-.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998643
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.61 E-value=0.0028 Score=76.96 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=24.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..++.+.|+||+|||||||+++|+|.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 77889999999999999999999997
No 209
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.57 E-value=0.0037 Score=65.76 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+..+.|.||+|+|||||++.|++.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34668999999999999999999986
No 210
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.53 E-value=0.0012 Score=70.64 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..+.+++|.||+|||||||.+.|.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999984
No 211
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.52 E-value=0.0011 Score=66.36 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|.+++|+||+|||||||.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46779999999999999999999876
No 212
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.48 E-value=0.00085 Score=79.76 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++..++|+|++|+|||||++.|.|..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 567799999999999999999999764
No 213
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.48 E-value=0.0048 Score=67.48 Aligned_cols=122 Identities=11% Similarity=0.117 Sum_probs=70.4
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHH--HHHhhCCChhh
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTI--AMDLEGSDSRE 105 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l--~ld~~g~~~~e 105 (825)
|+.+.-++ .+|+++.|.|++|+|||||+..++.... . .|. .+.|+--.++. +.+.. .....+.+...
T Consensus 36 LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a----~-~g~---~Vl~fSlEms~-~ql~~Rlls~~~~v~~~~ 104 (338)
T 4a1f_A 36 LDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSAL----N-DDR---GVAVFSLEMSA-EQLALRALSDLTSINMHD 104 (338)
T ss_dssp HHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHH----H-TTC---EEEEEESSSCH-HHHHHHHHHHHHCCCHHH
T ss_pred HHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHH----H-cCC---eEEEEeCCCCH-HHHHHHHHHHhhCCCHHH
Confidence 44444478 8999999999999999999988876521 1 222 23343222222 12111 11122333221
Q ss_pred -hhhhhhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCC-CcEEEEEec
Q 039839 106 -RGEDDTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-KTTLLFVIR 171 (825)
Q Consensus 106 -r~e~~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~-g~TIL~VTH 171 (825)
+.......+.+|+..|...+ ++.|.|+|... ...|...++++.+++ |..+|+|-|
T Consensus 105 l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----------i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 105 LESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----------IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----------HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----------HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 11123455788888887666 78888854321 334555666666555 788888864
No 214
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.47 E-value=0.0013 Score=71.92 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..+.+++|+|++|||||||+|.|.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347799999999999999999999973
No 215
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.43 E-value=0.0012 Score=64.34 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++|+|++|+|||||++.+.|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999996
No 216
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.42 E-value=0.079 Score=63.23 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhccc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
+-.|+|+|+.|+|||||+|.|.|...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34799999999999999999999753
No 217
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.40 E-value=0.0015 Score=62.60 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.8
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|++|+|||||+|.+.|..+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999743
No 218
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.38 E-value=0.0013 Score=70.46 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++.+++|+|++|+|||||+|.|.|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3444899999999999999999999854
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.27 E-value=0.0053 Score=67.57 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=24.6
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++ ..|.++.|.|++|+|||||...++..
T Consensus 59 Gl--~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GL--PMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SE--ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred Cc--cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46 78999999999999999999887654
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.23 E-value=0.0024 Score=65.71 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=24.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|.+++|.|++||||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999999999987
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.20 E-value=0.0027 Score=62.19 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|.++.|+|++||||||+.+.|.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 67889999999999999999999987
No 222
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.20 E-value=0.0019 Score=64.16 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+++|+|++|||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 223
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.18 E-value=0.0024 Score=61.80 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|++|+|||||++.+.|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.16 E-value=0.0033 Score=61.73 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=24.4
Q ss_pred ccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcC
Q 039839 26 NFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAF 71 (825)
Q Consensus 26 ~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~ 71 (825)
.+++++++.. ..+ .++|+|++|+|||||++.+.+-.+....++
T Consensus 12 ~~l~~~~~~~--~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t 54 (190)
T 1m2o_B 12 DVLASLGLWN--KHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPT 54 (190)
T ss_dssp --------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCC
T ss_pred HHHHHhhccC--Ccc-EEEEECCCCCCHHHHHHHHhcCCCCccccC
Confidence 4556666665 444 579999999999999999998654433333
No 225
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.16 E-value=0.0014 Score=64.98 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=29.9
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhccc
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
..++.++++.. ..+ .++|+|++|+|||||++.+.|-.+
T Consensus 13 ~~~l~~~~~~~--~~~-ki~lvG~~~vGKSsLi~~l~~~~~ 50 (198)
T 1f6b_A 13 SSVLQFLGLYK--KTG-KLVFLGLDNAGKTTLLHMLKDDRL 50 (198)
T ss_dssp CHHHHHHTCTT--CCE-EEEEEEETTSSHHHHHHHHSCC--
T ss_pred HHHHHHhhccC--CCc-EEEEECCCCCCHHHHHHHHhcCCC
Confidence 46777777776 566 478999999999999999987544
No 226
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.13 E-value=0.0014 Score=73.06 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=39.7
Q ss_pred EEEEEeEEEecCcccccccc--------------ccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 10 MQLIDGNGEFNVDGLENFVR--------------TTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 10 Lel~nlsk~y~~~~l~~il~--------------~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.++|++..|... +..+. ++.+.+ .+|+.++|+||+|+|||||++.|++.
T Consensus 134 i~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi--~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 134 ILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPI--GRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp CCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCC--BTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred ceeccccccCCCC--ccccccCCCCcccccceeeeeeeee--cCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4556667777542 34555 677888 89999999999999999999999886
No 227
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.10 E-value=0.0015 Score=75.12 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=28.3
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.++++.. .+| +.+|+|+|||||||||.+|.++
T Consensus 51 ~~~~~l~f--~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 51 ITQLELEL--GGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BSCEEEEC--CCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeeEEEec--CCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34566666 667 9999999999999999999888
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.07 E-value=0.0031 Score=63.54 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.+|+|||||||||+|.+|.-.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 38999999999999999998654
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.06 E-value=0.0048 Score=65.06 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhcc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..+.|.||+|+|||||.++|++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 579999999999999999999973
No 230
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.06 E-value=0.0018 Score=75.97 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=33.9
Q ss_pred cccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 25 ENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 25 ~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
..++..+++.+ ..|+.+.|+||||||||||+++|+|+.
T Consensus 47 ~~~l~~l~~~i--~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 47 EHAVEVIKTAA--NQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhhHhhccccc--cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34677788888 889999999999999999999999984
No 231
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.03 E-value=0.00066 Score=74.72 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=30.8
Q ss_pred eEEEEEeEEEecCccccccccccccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 9 CMQLIDGNGEFNVDGLENFVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 9 ~Lel~nlsk~y~~~~l~~il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+.+.++...|+. +.+..++++.+ +|+|++|+|||||+|.|+|..
T Consensus 17 ~v~~~~l~~~~~~---k~~~~~~~~~I--------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHR---KSVKKGFEFTL--------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHT---HHHHHCCEECE--------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCC---eeecCCCCEEE--------EEEcCCCCCHHHHHHHHhCCC
Confidence 3566666666654 34555555544 999999999999999999874
No 232
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.01 E-value=0.0031 Score=61.42 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
.|.+++|+|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999975
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.98 E-value=0.004 Score=61.25 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=24.7
Q ss_pred cccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 31 TKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 31 isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++.. ..|.+++|+|+.||||||+.+.|...
T Consensus 3 ~~~~~--~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQ--PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CC--CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCC--CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34555 67789999999999999999999764
No 234
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.97 E-value=0.0037 Score=63.94 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|.+++|+|++||||||+.+.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999873
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.97 E-value=0.0036 Score=61.94 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.5
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 47999999999999999999987
No 236
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.95 E-value=0.014 Score=62.70 Aligned_cols=123 Identities=7% Similarity=-0.026 Sum_probs=65.4
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhcccccCCcCCCcccceeeEEcCCCccchhHHHHHH-hhCCChhhh
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRSQTTKGIWIAKCVGIEPFTIAMD-LEGSDSRER 106 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G~~q~~~G~~~~~~t~~enl~l~ld-~~g~~~~er 106 (825)
|+.+.-++ .+|+++.|.|++|+|||||+..++.-. ...| ....|+--..+..+-..-... ..|.+....
T Consensus 58 LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~-----a~~g---~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l 127 (315)
T 3bh0_A 58 LDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNM-----SDND---DVVNLHSLEMGKKENIKRLIVTAGSINAQKI 127 (315)
T ss_dssp HHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHH-----HTTT---CEEEEEESSSCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHH-----HHcC---CeEEEEECCCCHHHHHHHHHHHHcCCCHHHH
Confidence 44444567 899999999999999999988776431 1122 123333222221111111111 123332211
Q ss_pred hh-h--hhHHHHHHHHHHHHHH---HHheecCCCCCCccccccCHHHHHHHHHHHHHhhCCCCcE--EEEEec
Q 039839 107 GE-D--DTTFEKQSALFALAIA---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT--LLFVIR 171 (825)
Q Consensus 107 ~e-~--~~~~ErQRv~iArALa---~VLLLDEPtsgLD~Epta~~~~~~~V~elL~~L~~~~g~T--IL~VTH 171 (825)
.. . ....+++|+..|...+ .+++.|+|. ++ ...+...++++.++.|.. +|+|-|
T Consensus 128 ~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~---------~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 128 KAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QS---------VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CB---------HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred hcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CC---------HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 11 1 1222667777776655 677777543 21 344556666666555666 777765
No 237
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.92 E-value=0.0037 Score=59.64 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 238
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.91 E-value=0.0042 Score=62.39 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=24.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|.++.|+|++||||||+.+.|.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 77889999999999999999999987
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.70 E-value=0.0051 Score=58.34 Aligned_cols=19 Identities=42% Similarity=0.551 Sum_probs=18.3
Q ss_pred EEEEECCCCCChhHHHHHH
Q 039839 42 VVAIMGPQSSGKSTLMNHL 60 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L 60 (825)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.70 E-value=0.0083 Score=65.93 Aligned_cols=22 Identities=41% Similarity=0.788 Sum_probs=19.7
Q ss_pred cEEEEECCCCCChhHHHHHHHh
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~G 62 (825)
.+.+|.|||||||||||-+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 241
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.65 E-value=0.0047 Score=69.46 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=22.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|++|+|||||+|.|.|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 799999999999999999999854
No 242
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.65 E-value=0.0059 Score=58.95 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.++.|.|++||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999875
No 243
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.57 E-value=0.0066 Score=58.91 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|.++.|.|++||||||+.+.|.-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 244
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.52 E-value=0.029 Score=63.21 Aligned_cols=34 Identities=9% Similarity=-0.010 Sum_probs=27.8
Q ss_pred ccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 28 VRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 28 l~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.+--++ .+|+++.|.|++|+|||||+..++..
T Consensus 190 LD~~lgGl--~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 190 LDQLIGTL--GPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp HHHHHCCC--CTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred hhhhcCCc--CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34444567 88999999999999999998887764
No 245
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.49 E-value=0.0076 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFR 66 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~ 66 (825)
-++|+|+.|+|||||++.+.|-.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~ 30 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQER 30 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC---
T ss_pred EEEEECCCCccHHHHHHHHhcCCCc
Confidence 4799999999999999999987653
No 246
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.47 E-value=0.0097 Score=56.13 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcC
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAF 71 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~ 71 (825)
.++|+|+.|+|||||++.+.+-.+....++
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t 38 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGEVVTTIPT 38 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcCCc
Confidence 589999999999999999988655433333
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.45 E-value=0.0074 Score=59.21 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|+.||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999885
No 248
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.45 E-value=0.0078 Score=60.44 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-+++|.|++||||||+.+.|.++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHc
Confidence 48999999999999999999874
No 249
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.0036 Score=67.61 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=30.3
Q ss_pred ccccccccccccCCCcE--EEEECCCCCChhHHHHHHHhcc
Q 039839 26 NFVRTTKLNHCGLSYAV--VAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 26 ~il~~isl~i~g~~Gei--vaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++..+...+ ..|++ +.+.||+|+|||||++++++..
T Consensus 32 ~~~~~L~~~i--~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 32 EVITTVRKFV--DEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHH--HTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666666 66666 9999999999999999999974
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.44 E-value=0.0043 Score=68.33 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=31.3
Q ss_pred cccccccccccccCCCcE--EEEECCCCCChhHHHHHHHhc
Q 039839 25 ENFVRTTKLNHCGLSYAV--VAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 25 ~~il~~isl~i~g~~Gei--vaIiGpNGSGKSTLLn~L~Gl 63 (825)
..++..+++.+ ..|++ ++|+|++||||||+.++|++.
T Consensus 9 ~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 9 DDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34667777777 77777 999999999999999999886
No 251
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.42 E-value=0.01 Score=55.77 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=23.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcC
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAF 71 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~ 71 (825)
-++|+|+.|+|||||++.+.+-.+....|+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t 31 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPT 31 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCc
Confidence 379999999999999999988655433333
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.42 E-value=0.0062 Score=63.20 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+.++.|+|++||||||+.+.|.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 67789999999999999999999886
No 253
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.40 E-value=0.0074 Score=69.34 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=27.1
Q ss_pred cccccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 27 FVRTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 27 il~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.++++.+ ..| +.|+||+|+|||||+++|+|.
T Consensus 55 ~~~~lg~~i--p~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 55 RFHEMGARI--PKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp GTTTTSCCC--CSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhccCCC--Cce--EEEECCCCCCHHHHHHHHHHH
Confidence 344555666 666 899999999999999999997
No 254
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.39 E-value=0.0087 Score=57.78 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=24.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCC
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG 73 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G 73 (825)
.++|+|+.|+|||||++.+.|-......+..|
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~ 56 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG 56 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCccccccCCCC
Confidence 58999999999999999999975433333333
No 255
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.39 E-value=0.0066 Score=63.50 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|++|||||||+|.|.|..+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999854
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.37 E-value=0.0076 Score=62.76 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|+||+|||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999875
No 257
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.35 E-value=0.0057 Score=57.58 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|..+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 479999999999999999988754
No 258
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.35 E-value=0.0094 Score=67.36 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=22.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.|+|+|++|+|||||+|.|.|..+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~ 48 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERI 48 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999999754
No 259
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.30 E-value=0.0069 Score=66.78 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
+++|+|++|||||||+|.|.|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 499999999999999999999754
No 260
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.29 E-value=0.008 Score=60.21 Aligned_cols=22 Identities=45% Similarity=0.804 Sum_probs=19.3
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.|+||+|||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999998754
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.0085 Score=58.21 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|..+
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999753
No 262
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.27 E-value=0.005 Score=59.80 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=24.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCC
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG 73 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G 73 (825)
.++|+|++|+|||||++.+.|-.+....++.|
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 58999999999999999999864433333333
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.25 E-value=0.045 Score=60.40 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.6
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHh
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
++ ..|.++.|.||.|+|||||...++.
T Consensus 70 Gl--~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GI--PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SE--ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred Cc--cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 56 7899999999999999999877654
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.24 E-value=0.0096 Score=58.02 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+.++.|.|++||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999764
No 265
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.21 E-value=0.0092 Score=56.00 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998654
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.18 E-value=0.0086 Score=57.98 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.18 E-value=0.01 Score=57.06 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHh
Q 039839 42 VVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~G 62 (825)
++.|.|++||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 268
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.16 E-value=0.0091 Score=69.19 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=27.1
Q ss_pred cccccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 29 RTTKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 29 ~~isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+++.. +|.+++|+||+|+|||||+++|++.
T Consensus 100 ~~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 100 QKLTKSL---KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHHSSSC---CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhcccC---CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4444443 6889999999999999999999998
No 269
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.16 E-value=0.01 Score=61.17 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-+.|.||+|+|||||+++|++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3889999999999999999987
No 270
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.14 E-value=0.0091 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 479999999999999999998653
No 271
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.14 E-value=0.01 Score=55.40 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~ 28 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTF 28 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999987643
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.13 E-value=0.011 Score=63.48 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=26.7
Q ss_pred cccccccCCCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 31 TKLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 31 isl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
+++.. . +.+++++|+||+||||++..|++..
T Consensus 92 i~~~~--~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDK--I-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSS--S-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCC--C-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55554 4 8899999999999999999999983
No 273
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.11 E-value=0.01 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~ 29 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEF 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcc
Confidence 479999999999999999998653
No 274
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.11 E-value=0.0046 Score=61.47 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|++|||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 275
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.09 E-value=0.011 Score=55.23 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.|-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.01 Score=55.72 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998643
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.08 E-value=0.012 Score=57.97 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+|-+++|.|+.||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
No 278
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.07 E-value=0.011 Score=61.34 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.||+||||||+.+.|+..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999854
No 279
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.06 E-value=0.011 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998753
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.06 E-value=0.01 Score=57.66 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.++.|.|++||||||+.+.|.-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999743
No 281
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.04 E-value=0.011 Score=55.44 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998754
No 282
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.01 E-value=0.012 Score=58.08 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|+|++|||||||++.|.+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999886
No 283
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.98 E-value=0.012 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKF 31 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998754
No 284
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.98 E-value=0.012 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~~ 33 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDKY 33 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 579999999999999999988653
No 285
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.97 E-value=0.013 Score=57.58 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+++|.|+.||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999874
No 286
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.97 E-value=0.013 Score=57.81 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|.+++|.|+.||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 558999999999999999999875
No 287
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.97 E-value=0.011 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKF 28 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 479999999999999999998754
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.96 E-value=0.013 Score=56.97 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.++.|+|+.||||||+.+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999764
No 289
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.95 E-value=0.012 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999988643
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.93 E-value=0.013 Score=62.24 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+.++.|.||+|||||||.+.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56779999999999999999999764
No 291
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.91 E-value=0.013 Score=55.78 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998653
No 292
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.86 E-value=0.007 Score=58.05 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|++|+|||||++.+.+-.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc
Confidence 689999999999999999986543
No 293
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.85 E-value=0.012 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~ 34 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYF 34 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 579999999999999999998743
No 294
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.84 E-value=0.014 Score=57.57 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|++||||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999884
No 295
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.84 E-value=0.012 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
-++|+|+.|+|||||++.+.|..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37999999999999999998764
No 296
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.011 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999988643
No 297
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.84 E-value=0.015 Score=56.85 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.+++|.|+.||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999754
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.84 E-value=0.013 Score=56.79 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.|.|+.||||||+.+.|.-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999775
No 299
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.82 E-value=0.011 Score=57.34 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||+|.+.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 300
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.81 E-value=0.014 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999997543
No 301
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.80 E-value=0.014 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|.+++|.|+.||||||+.+.|.-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34668999999999999999999753
No 302
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.79 E-value=0.025 Score=60.48 Aligned_cols=25 Identities=48% Similarity=0.668 Sum_probs=22.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFR 66 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~ 66 (825)
.|+|+|+.|+|||||+|.|.|..+.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcc
Confidence 6999999999999999999998654
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.78 E-value=0.015 Score=56.40 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.+++|.|+.||||||+.+.|.-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999998653
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.78 E-value=0.014 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999999754
No 305
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.75 E-value=0.015 Score=55.84 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 479999999999999999998653
No 306
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.74 E-value=0.016 Score=55.27 Aligned_cols=32 Identities=19% Similarity=0.497 Sum_probs=25.1
Q ss_pred EEEEECCCCCChhHHHHHHHhcccccCCcCCC
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFREMDAFRG 73 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~~~~~~~G 73 (825)
-++|+|+.|+|||||++.+.+-.+....++.|
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~ 40 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTES 40 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCCCSSCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCcCCCcc
Confidence 47999999999999999999876544344433
No 307
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.71 E-value=0.019 Score=54.59 Aligned_cols=25 Identities=40% Similarity=0.671 Sum_probs=22.1
Q ss_pred cEEEEECCCCCChhHHHHHHHhccc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-.++|+|+.|+|||||++.+.+-.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~ 33 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKV 33 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3689999999999999999998654
No 308
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.70 E-value=0.013 Score=65.39 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+..++|+|++|+|||||+|.|.|..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34479999999999999999999974
No 309
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.69 E-value=0.019 Score=55.27 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.|-.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 310
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.69 E-value=0.014 Score=61.52 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|++|+|||||+|.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 311
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.68 E-value=0.015 Score=56.47 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998754
No 312
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.68 E-value=0.015 Score=55.77 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998643
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.63 E-value=0.017 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+|-+++|.|+.||||||+.+.|.-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999753
No 314
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.61 E-value=0.015 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~ 39 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSF 39 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999987643
No 315
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.60 E-value=0.017 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGT
T ss_pred EEEEECcCCCCHHHHHHHHHhCcC
Confidence 479999999999999999998653
No 316
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.60 E-value=0.013 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~ 26 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV 26 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 478999999999999999998754
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.59 E-value=0.017 Score=56.39 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|+.||||||+.+.|.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 318
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.59 E-value=0.015 Score=60.06 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.|+|+|..|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999999754
No 319
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.57 E-value=0.023 Score=60.82 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=22.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|.+|+|||||+|.|.|..+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~ 32 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV 32 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCce
Confidence 589999999999999999999764
No 320
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.54 E-value=0.018 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998754
No 321
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.018 Score=54.93 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 579999999999999999998754
No 322
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.52 E-value=0.018 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC
Confidence 589999999999999999998654
No 323
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.48 E-value=0.018 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998643
No 324
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.48 E-value=0.018 Score=61.03 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=22.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||+|.|.|..+
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.45 E-value=0.087 Score=59.57 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.++.++|++|+||||++..|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 3569999999999999999999876
No 326
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.44 E-value=0.02 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998754
No 327
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.40 E-value=0.02 Score=60.86 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+..+.|.||+|+|||||+++|++.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 66778999999999999999999987
No 328
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.39 E-value=0.02 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.+++|.|+.||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999999999764
No 329
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.38 E-value=0.019 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~ 39 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEF 39 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 579999999999999999998653
No 330
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.38 E-value=0.02 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
-++|+|+.|+|||||+|.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999999863
No 331
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.36 E-value=0.018 Score=55.22 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 579999999999999999998654
No 332
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.35 E-value=0.018 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=17.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.++.|.|+.||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3558999999999999999999754
No 333
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.34 E-value=0.018 Score=64.78 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+++++|+|+|||||||++..|++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999983
No 334
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.33 E-value=0.015 Score=61.00 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||+|.|+|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999875
No 335
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.31 E-value=0.021 Score=55.92 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998753
No 336
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.27 E-value=0.022 Score=55.51 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|++|+|||||++.+.+-.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999998877643
No 337
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.26 E-value=0.022 Score=55.27 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998754
No 338
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.25 E-value=0.02 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Confidence 589999999999999999998643
No 339
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.22 E-value=0.023 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNFR 66 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~~ 66 (825)
.++|+|+.|+|||||++.+.+-.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~~~ 43 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQSS 43 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999987653
No 340
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.22 E-value=0.017 Score=55.69 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998754
No 341
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.22 E-value=0.022 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 579999999999999999987643
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.21 E-value=0.024 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.18 E-value=0.023 Score=56.64 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++|.||.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 344
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.18 E-value=0.023 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998653
No 345
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.17 E-value=0.021 Score=55.66 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~ 48 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHF 48 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998754
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.16 E-value=0.023 Score=56.45 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998753
No 347
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.15 E-value=0.024 Score=54.20 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999987543
No 348
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.021 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~~ 41 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNEV 41 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999997544
No 349
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.11 E-value=0.022 Score=55.06 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998654
No 350
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.09 E-value=0.035 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 579999999999999999998654
No 351
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.09 E-value=0.03 Score=55.85 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+..+.|.||.|+|||||++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999876
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.07 E-value=0.031 Score=55.28 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+-+++|.|+.||||||+.+.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44558999999999999999999764
No 353
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.07 E-value=0.023 Score=59.35 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|..|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999974
No 354
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.07 E-value=0.022 Score=58.73 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||+|.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 355
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.02 E-value=0.026 Score=54.68 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987643
No 356
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.01 E-value=0.03 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
...+++|.|+.||||||+.+.|.-.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999754
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.00 E-value=0.024 Score=54.27 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|+.||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 358
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.99 E-value=0.026 Score=56.22 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|+|+.|+|||||++.|.+.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 359
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.95 E-value=0.027 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998654
No 360
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.95 E-value=0.025 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998654
No 361
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.94 E-value=0.026 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998754
No 362
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.025 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
-++|+|+.|+|||||++.+.|-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.93 E-value=0.027 Score=56.93 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.++.|+|+.||||||+.+.|+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.93 E-value=0.026 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+++|.|+.||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 365
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.92 E-value=0.027 Score=55.32 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999985
No 366
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.91 E-value=0.025 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 589999999999999999998754
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.90 E-value=0.029 Score=56.09 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++|+||.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.90 E-value=0.031 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 369
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.89 E-value=0.029 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998764
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.88 E-value=0.032 Score=56.04 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.|-++.|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 371
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.87 E-value=0.026 Score=54.70 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999875
No 372
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.87 E-value=0.19 Score=56.66 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=24.7
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-++ .+|+++.|.|+.|+|||||+-.++.-
T Consensus 192 gGl--~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 192 YGY--KRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SSB--CSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCC--CCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 367 88999999999999999998776543
No 373
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.87 E-value=0.028 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998754
No 374
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.86 E-value=0.026 Score=55.49 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998754
No 375
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.029 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998754
No 376
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.83 E-value=0.019 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998764
No 377
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.03 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998654
No 378
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.80 E-value=0.03 Score=54.93 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998753
No 379
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.79 E-value=0.027 Score=62.19 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|++|+|||||+|.|.|..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999974
No 380
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.79 E-value=0.03 Score=57.79 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-+++|.|+.||||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999763
No 381
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.79 E-value=0.039 Score=57.53 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||+|.|+|..+
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999754
No 382
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.76 E-value=0.031 Score=54.42 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998754
No 383
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.75 E-value=0.024 Score=55.34 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=19.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.|-.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~ 51 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTF 51 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999988643
No 384
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.75 E-value=0.034 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-++++|.|+.||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999763
No 385
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.74 E-value=0.029 Score=58.52 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||+|.|.|..+
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 589999999999999999999653
No 386
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.73 E-value=0.025 Score=59.19 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=22.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|..|+|||||+|.|.|..+
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999864
No 387
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.72 E-value=0.034 Score=56.66 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
..|+.+.|.||+||||||++..+..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 4688999999999999999887654
No 388
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.70 E-value=0.029 Score=58.92 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|..|||||||+|.|.|..+
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~ 28 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999753
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.69 E-value=0.028 Score=56.60 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.++.|+|+.||||||+.+.|+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999754
No 390
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.68 E-value=0.027 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENKF 50 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC---
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987643
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.66 E-value=0.028 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|+|+.||||||+.+.|.-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 392
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.029 Score=55.74 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987643
No 393
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.65 E-value=0.028 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.|-.+
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~~ 54 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRANV 54 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998754
No 394
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.62 E-value=0.046 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998654
No 395
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.60 E-value=0.015 Score=57.81 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||+|.|.|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 396
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.032 Score=55.14 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998643
No 397
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.54 E-value=0.034 Score=58.37 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=22.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|.+|+|||||+|.|.|...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc
Confidence 789999999999999999999754
No 398
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.53 E-value=0.036 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 589999999999999999988653
No 399
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.50 E-value=0.046 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
...+.|.||.|+|||||++.+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999875
No 400
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.43 E-value=0.039 Score=60.84 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|.+|+|||||+|.|.|-.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999963
No 401
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.43 E-value=0.035 Score=54.99 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 402
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.43 E-value=0.039 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.|+.||||||+.+.|.-.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999754
No 403
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.42 E-value=0.022 Score=55.07 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~~ 47 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGDV 47 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999976544
No 404
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.39 E-value=0.05 Score=56.50 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||+|.|.|-..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999754
No 405
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.37 E-value=0.028 Score=59.80 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=18.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+-+++|.||+||||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998764
No 406
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.36 E-value=0.025 Score=54.24 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=9.2
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 407
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.34 E-value=0.045 Score=53.96 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=21.4
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999886
No 408
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.34 E-value=0.036 Score=61.00 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhcc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.+..++|+||+|||||||++.|.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999998763
No 409
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.33 E-value=0.037 Score=54.04 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~~ 45 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNGY 45 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987643
No 410
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.33 E-value=0.036 Score=59.12 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+..+.|.||+|+|||||++.|++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999987
No 411
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.32 E-value=0.036 Score=55.19 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.8
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998754
No 412
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.32 E-value=0.043 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.++.|.|++||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 413
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.30 E-value=0.025 Score=55.48 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~ 54 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEI 54 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc
Confidence 689999999999999999987543
No 414
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.24 E-value=0.044 Score=55.51 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.|.|+.||||||+.+.|.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 415
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.21 E-value=0.039 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 479999999999999999998654
No 416
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.20 E-value=0.057 Score=51.33 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999775
No 417
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.19 E-value=0.037 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 418
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.18 E-value=0.037 Score=54.19 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-++|+|+.|+|||||++.+.|-
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999885
No 419
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.16 E-value=0.041 Score=53.41 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998643
No 420
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.14 E-value=0.041 Score=58.10 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.-+++|.|+.||||||+.+.|..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 348999999999999999999843
No 421
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.96 E-value=0.055 Score=55.71 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHh
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
.+-+++|+||.||||||+.+.|.-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999964
No 422
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.89 E-value=0.049 Score=54.40 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.+-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998763
No 423
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.83 E-value=0.31 Score=55.50 Aligned_cols=47 Identities=6% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHheecCCCCCCcccc-ccC-HHHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 039839 126 DIVLINMWCHDIGREQ-AAN-KPLLKTVFQVMMRLFSPRKTTLLFVIRDK 173 (825)
Q Consensus 126 ~VLLLDEPtsgLD~Ep-ta~-~~~~~~V~elL~~L~~~~g~TIL~VTHDl 173 (825)
+++++| +...+.... ..+ ......+...|+.++++.+++||+++|--
T Consensus 356 ~lvVID-~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 356 DVIILD-HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp SEEEEE-CTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred CEEEEc-cchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 889999 444443211 112 34456777788888887899999998844
No 424
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.77 E-value=0.024 Score=55.38 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=4.3
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++|+|+.|+|||||++.+.|-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999886
No 425
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.74 E-value=0.05 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|+.|+|||||++.+.+-.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhhCCC
Confidence 589999999999999999988653
No 426
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.73 E-value=0.023 Score=56.36 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||+|.+.|-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 427
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.056 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.6
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998754
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.70 E-value=0.052 Score=54.30 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++|.|+.||||||+.+.|.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 429
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.57 E-value=0.055 Score=54.66 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.48 E-value=0.062 Score=56.48 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEECCCCCChhHHHHHHHh
Q 039839 42 VVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~G 62 (825)
++.|.|++||||||+.+.|.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.37 E-value=0.065 Score=53.90 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+|-++.|+|+.||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 432
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.37 E-value=0.059 Score=53.25 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 433
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.34 E-value=0.27 Score=49.58 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=40.7
Q ss_pred HHheecCCCC--CCccccccCHHHHHHHHHHHHHhhCCCCcEEEEEecCCCCccccccCcEEEEeC
Q 039839 126 DIVLINMWCH--DIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEYLEPILREDI 189 (825)
Q Consensus 126 ~VLLLDEPts--gLD~Epta~~~~~~~V~elL~~L~~~~g~TIL~VTHDl~~a~l~~~drvlvl~~ 189 (825)
|+|||||... .+|.-+ ...|++++.+- ..+..||++.++....-++.+|.|--|..
T Consensus 122 DlvILDEi~~al~~g~l~------~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 122 DMVVLDELTYMVAYDYLP------LEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp SEEEEETHHHHHHTTSSC------HHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred CEEEEeCCCccccCCCCC------HHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 9999998875 345555 77888888753 34789999999984332457898876654
No 434
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.33 E-value=0.065 Score=53.52 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999988654
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.31 E-value=0.079 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+..+.|+|+.||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 436
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.25 E-value=0.074 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+.-+.|.||.|+|||||++.|++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34557999999999999999999886
No 437
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.23 E-value=0.063 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
-++|+|+.|+|||||++.+.+-.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999987654
No 438
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.20 E-value=0.067 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.7
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-+++|.|+.||||||+.+.|...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999774
No 439
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.20 E-value=0.079 Score=54.47 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred cCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 37 GLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 37 g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+..|-++.|.|+.||||||+.+.|...
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999765
No 440
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.19 E-value=0.068 Score=58.42 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.||+|||||||.+.|+..
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 7899999999999999999875
No 441
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.19 E-value=0.077 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-+|-++.|.|+.||||||+++.|...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999765
No 442
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.13 E-value=0.073 Score=50.67 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+..+.|.||.|+|||||++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999876
No 443
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.09 E-value=0.078 Score=60.35 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|+.++|+||+|+|||||++.|.+.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhh
Confidence 46889999999999999999998775
No 444
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.97 E-value=0.17 Score=65.64 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=25.5
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++ .+|+++.|.||+|+|||||+..++..
T Consensus 728 Gl--~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GL--PMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SE--ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred Cc--CCCceEEEECCCCCCcHHHHHHHHHH
Confidence 56 89999999999999999999988775
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.91 E-value=0.082 Score=59.06 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 55679999999999999999998754
No 446
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.89 E-value=0.049 Score=54.33 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEECCCCCChhHHHHH-HHhc
Q 039839 42 VVAIMGPQSSGKSTLMNH-LFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~-L~Gl 63 (825)
.++|+|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999998 6564
No 447
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.81 E-value=0.077 Score=54.64 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=19.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|-++.|.|+.||||||+++.|...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998765
No 448
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.77 E-value=0.093 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..|..+.|+||+|+|||||...|...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35668999999999999999988764
No 449
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.74 E-value=0.088 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+|.++.|.|+.||||||+++.|...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34669999999999999999999765
No 450
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.74 E-value=0.049 Score=59.30 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=22.1
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|.+|+|||||+|.|.|..+
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999754
No 451
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.35 Score=54.00 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.9
Q ss_pred EEEECCCCCChhHHHHHHHhc
Q 039839 43 VAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl 63 (825)
+-+.||.|||||+|.+++++.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHh
Confidence 789999999999999999986
No 452
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.64 E-value=0.095 Score=55.84 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEECCCCCChhHHHHHHHhc
Q 039839 43 VAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.|.||+|+|||||++.+++.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999886
No 453
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.61 E-value=0.09 Score=53.64 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|.+++|.|+.||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.54 E-value=0.098 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+|.++.|-|+.||||||+++.|...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999765
No 455
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.52 E-value=0.093 Score=55.63 Aligned_cols=23 Identities=43% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|.+|+|||||+|.|.|..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEecCCCchHHHHHHHhcCc
Confidence 68999999999999999999974
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.52 E-value=0.1 Score=56.60 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.+++|+||+|||||||...|+-.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 347899999999999999999764
No 457
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.49 E-value=0.081 Score=56.78 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 55668999999999999999999876
No 458
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.41 E-value=0.12 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+..++.|+||.||||+|..+.|+-.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 55568999999999999999998654
No 459
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.31 E-value=0.079 Score=59.39 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=22.0
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.|+|+|+.|+|||||+|.|.|..+
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~ 28 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERI 28 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999754
No 460
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.29 E-value=0.1 Score=56.57 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.|+||+|||||||.+.|+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999875
No 461
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.21 E-value=0.13 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..-+.|.||.|+|||||.+.|+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999885
No 462
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.20 E-value=0.11 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.++.|+||.|||||||...|+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
No 463
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.12 E-value=0.38 Score=63.43 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=24.5
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++ .+|.++.|.||.|+|||||+..++..
T Consensus 379 Gl--~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 379 GL--PMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp SE--ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred Cc--cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46 78999999999999999998877654
No 464
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.11 E-value=0.069 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++-+++|.|+.||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999999999999998765
No 465
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.06 E-value=0.12 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+|.++.|.|+.||||||+++.|...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999876
No 466
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.26 E-value=0.044 Score=53.86 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 57999999999999999988653
No 467
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.80 E-value=0.12 Score=56.33 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..-+++|+|+.|+|||||++.|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999876
No 468
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.67 E-value=0.029 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988754
No 469
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.62 E-value=0.52 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.9
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.=+-+.||.|||||+|.++|++.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 34889999999999999999986
No 470
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.60 E-value=0.12 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-++|+|+.|+|||||++.++|-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 471
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.55 E-value=0.32 Score=63.25 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=24.2
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++ .+|.++.|.||.|+|||||.-.++..
T Consensus 379 Gl--~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 379 GL--PMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp SE--ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred Cc--CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46 78999999999999999998877554
No 472
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.52 E-value=0.11 Score=57.99 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhcc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
.++|+|..|+|||||+|.|.|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999874
No 473
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.47 Score=53.89 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
-.=+.+.||.|||||+|.++|++.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 334789999999999999999986
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.43 E-value=0.11 Score=58.50 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+++|+|++|+||||+++.|++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999986
No 475
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.39 E-value=0.14 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.4
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++.|+||.||||+|..+.|+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999754
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.39 E-value=0.14 Score=55.35 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.6
Q ss_pred cEEEEECCCCCChhHHHHHHHhc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++.|+||+|||||||...|+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 37899999999999999999865
No 477
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.37 E-value=0.14 Score=58.16 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.2
Q ss_pred cEEEEECCCCCChhHHHHHHHhccc
Q 039839 41 AVVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 41 eivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
=.|+|+|+.|+|||||+|.|.|..+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 3599999999999999999999753
No 478
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.24 E-value=0.13 Score=56.50 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+..++++|..|+|||||+|.|+|.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 346899999999999999999997
No 479
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.18 E-value=0.12 Score=59.98 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=22.3
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.|+|+|..|+|||||+|.|.|..+
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 799999999999999999999754
No 480
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.15 E-value=0.14 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.+.|.||.|+|||||++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999875
No 481
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.02 E-value=0.15 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.|.-+.|.|++|+|||||...|.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5667999999999999999999874
No 482
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.00 E-value=0.086 Score=63.95 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.2
Q ss_pred ccccccCCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 32 KLNHCGLSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 32 sl~i~g~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
++++ ..+..+.|.||+|+|||||.++|++.
T Consensus 505 ~~~~--~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 505 KFGM--TPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCC--CCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred hcCC--CCCceeEEECCCCCCHHHHHHHHHHH
Confidence 4455 67788999999999999999999997
No 483
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.90 E-value=0.18 Score=52.92 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=22.4
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+..+.|.||.|+|||||.+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44557899999999999999988876
No 484
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.77 E-value=0.15 Score=54.39 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.8
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHHHh
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
-++ ..|+++.|.||+|+|||||+..++.
T Consensus 93 GGl--~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGL--ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSE--ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCc--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356 8899999999999999999988775
No 485
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.71 E-value=0.18 Score=54.34 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+..+.|.||.|+|||||++.++..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999875
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.64 E-value=0.088 Score=54.22 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEECCCCCChhHHHHHHHhc
Q 039839 43 VAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.|.||+|+|||||++.|++.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999885
No 487
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.59 E-value=0.19 Score=47.25 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.2
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
..+.-+.|.||.|+|||+|.+.|...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 34446889999999999999999876
No 488
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=89.38 E-value=0.15 Score=56.18 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhcc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHTN 64 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl~ 64 (825)
+..++++|..|+|||||+|.|+|..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhh
Confidence 4468999999999999999999973
No 489
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.32 E-value=0.2 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.2
Q ss_pred CCcEEEEECCCCCChhHHH-HHHH
Q 039839 39 SYAVVAIMGPQSSGKSTLM-NHLF 61 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLL-n~L~ 61 (825)
+|.++.+.||.||||||++ +.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999997 5543
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.13 E-value=0.22 Score=50.24 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
|.+++|=|+-||||||+++.|.-.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999876
No 491
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.06 E-value=0.22 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.2
Q ss_pred ccccCCCcEEEEECCCCCChhHHHHHH
Q 039839 34 NHCGLSYAVVAIMGPQSSGKSTLMNHL 60 (825)
Q Consensus 34 ~i~g~~GeivaIiGpNGSGKSTLLn~L 60 (825)
++ .+|+++.|.|+.|+|||||+-.+
T Consensus 26 Gl--~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GF--PEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SE--ETTCEEEEECCTTSSHHHHHHHH
T ss_pred CC--CCCeEEEEEeCCCCCHHHHHHHH
Confidence 67 88999999999999999997654
No 492
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.95 E-value=0.19 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCChhHHHHHHHhc
Q 039839 40 YAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 40 GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+.-+.|.||.|+|||||.+.++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999876
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.88 E-value=0.19 Score=56.27 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+++|.||+|||||||.+.|+-.
T Consensus 4 ~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHH
Confidence 7899999999999999988754
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.87 E-value=0.22 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHh
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
..|.-+.|.|++|+|||||.-.+..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3566799999999999999887755
No 495
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.71 E-value=0.5 Score=62.30 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=24.5
Q ss_pred cccccCCCcEEEEECCCCCChhHHHHHHHh
Q 039839 33 LNHCGLSYAVVAIMGPQSSGKSTLMNHLFH 62 (825)
Q Consensus 33 l~i~g~~GeivaIiGpNGSGKSTLLn~L~G 62 (825)
.++ .+|+++.|.||.|||||||...+.-
T Consensus 1076 ggi--~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1076 GGL--PMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp SSE--ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCc--CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 357 8999999999999999999998753
No 496
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.62 E-value=0.19 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.9
Q ss_pred EEEEECCCCCChhHHHHHHHhccc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHTNF 65 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~~ 65 (825)
.++|+|..|+|||||+|.+.|-.+
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 497
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.48 E-value=0.27 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
...-++.+.|+.|+|||||++.|+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34448999999999999999999843
No 498
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.35 E-value=0.22 Score=55.14 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHhc
Q 039839 42 VVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.++++|+.|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999984
No 499
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.24 E-value=0.26 Score=51.00 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.3
Q ss_pred CCCcEEEEECCCCCChhHHHHHHHhc
Q 039839 38 LSYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 38 ~~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
.....+.|.||.|+|||||.+.|+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 500
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.09 E-value=0.25 Score=56.71 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCChhHHHHHHHhc
Q 039839 39 SYAVVAIMGPQSSGKSTLMNHLFHT 63 (825)
Q Consensus 39 ~GeivaIiGpNGSGKSTLLn~L~Gl 63 (825)
+..+++|+|++|+|||||++.|+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999854
Done!