BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039840
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 88 CEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL------KASFGLL 141
C+ C K E E + V +E GM+DGQ +VF + + D PGD+ +
Sbjct: 99 CKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFK 158
Query: 142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDIS 186
R+G++L I L + A+ G E ++H+ G + +
Sbjct: 159 RDGDDLVYEAEIDL---------LTAIAGGEFALEHVSGDWLKVG 194
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 95 KYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDL------KASFGLLREGNNL 147
K E V V+I+ G +DG ++ + +G+ G PGDL K R+ +L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 148 HATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPK 194
VTI LV+ A+ GF + LD + I K I PK
Sbjct: 96 IXKVTIPLVR---------ALTGFTCPVTTLDNRNLQIPIKEIVNPK 133
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 64 CNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDG 123
C + ++ HK++ P E +T++++KG ++G ++ F ++G
Sbjct: 29 CTKKMKISHKRLNP--------------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 74
Query: 124 EPIIDGEPGDL------KASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKH 177
+ + P D+ K R+G+++ I+L + CG +
Sbjct: 75 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCT---------VNVPT 125
Query: 178 LDGHLVDISTKGITKPKEVRK 198
LDG + + K + +P RK
Sbjct: 126 LDGRTIPVVFKDVIRPGMRRK 146
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 64 CNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDG 123
C + ++ HK++ P E +T++++KG ++G ++ F ++G
Sbjct: 20 CTKKMKISHKRLNP--------------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 65
Query: 124 EPIIDGEPGDL------KASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKH 177
+ + P D+ K R+G+++ I+L + CG +
Sbjct: 66 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGC---------TVNVPT 116
Query: 178 LDGHLVDISTKGITKPKEVRK 198
LDG + + K + +P RK
Sbjct: 117 LDGRTIPVVFKDVIRPGMRRK 137
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 29/141 (20%)
Query: 64 CNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDG 123
C + ++ HK++ P E +T++++KG ++G ++ F ++G
Sbjct: 22 CTKKMKISHKRLNP--------------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 67
Query: 124 EPIIDGEPGDL------KASFGLLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKH 177
+ + P D+ K R+G+++ I+L + CG +
Sbjct: 68 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGC---------TVNVPT 118
Query: 178 LDGHLVDISTKGITKPKEVRK 198
LDG + + K + +P RK
Sbjct: 119 LDGRTIPVVFKDVIRPGMRRK 139
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 69 EVYHKQIGPGMFQQMTEQVCEQCQN-VKYEREGYFVTVDI 107
+++HK+I + +M QVCE+ N V E + YF T+ +
Sbjct: 156 QLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPV 195
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 69 EVYHKQIGPGMFQQMTEQVCEQCQN-VKYEREGYFVTVDI 107
+++HK+I + +M QVCE+ N V + + YF T+ +
Sbjct: 156 QLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQTLPV 195
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 127 IDGEPGDLKASFGLLREGNNLHATVTITLVKLSCGLWDV-QAVVGFEKTI 175
++ G ++ FG+++ N +HA+ + C LW + +V +E+++
Sbjct: 102 VESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWERSV 151
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 236 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 278
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 231 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 273
>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 231 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 273
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 223 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 265
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 231 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 273
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 216 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 258
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 204 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 246
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 204 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 246
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 203 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 245
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 211 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 253
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 204 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 246
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 203 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 245
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 188 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 230
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 187 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 229
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 188 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 230
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 189 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 231
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 184 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 226
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 189 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 231
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 189 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 231
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREK 52
+R H + ++ L +L++D G P E DE I +G +R++
Sbjct: 184 HRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQR 226
>pdb|2O09|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O09|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O0C|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0C|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0G|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|2O0G|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|3L6J|A Chain A, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3L6J|B Chain B, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3TF8|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF8|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF9|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TF9|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TFA|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
pdb|3TFA|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
Length = 189
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 148 HATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKE 195
H T +K GL D+ VG E + HLV +++ + KP E
Sbjct: 17 HGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAE 64
>pdb|3TFG|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
pdb|3TFG|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
Length = 189
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 148 HATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKE 195
H T +K GL D+ VG E + HLV +++ + KP E
Sbjct: 17 HGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAE 64
>pdb|3TFF|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
pdb|3TFF|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
Length = 189
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 148 HATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKE 195
H T +K GL D+ VG E + HLV +++ + KP E
Sbjct: 17 HGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAE 64
>pdb|3TFD|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFD|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFE|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
pdb|3TFE|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
Length = 189
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 148 HATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKE 195
H T +K GL D+ VG E + HLV +++ + KP E
Sbjct: 17 HGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAE 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,512,889
Number of Sequences: 62578
Number of extensions: 273612
Number of successful extensions: 518
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 42
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)