Query 039840
Match_columns 198
No_of_seqs 225 out of 1775
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.7E-39 3.8E-44 291.5 18.0 172 16-198 83-307 (371)
2 PRK14296 chaperone protein Dna 100.0 4.6E-35 1E-39 264.5 19.6 167 21-198 99-317 (372)
3 PTZ00037 DnaJ_C chaperone prot 100.0 3.8E-35 8.1E-40 268.9 17.7 165 22-198 102-320 (421)
4 PRK14288 chaperone protein Dna 100.0 1.1E-34 2.5E-39 261.7 18.9 166 21-198 88-302 (369)
5 PRK14287 chaperone protein Dna 100.0 2.3E-34 4.9E-39 259.9 20.8 169 20-198 85-305 (371)
6 PRK14285 chaperone protein Dna 100.0 1.4E-34 3E-39 260.8 19.3 166 21-198 94-310 (365)
7 PRK14278 chaperone protein Dna 100.0 2.3E-34 4.9E-39 260.5 20.5 169 21-198 86-307 (378)
8 PRK14298 chaperone protein Dna 100.0 1.7E-34 3.6E-39 261.3 19.3 168 21-198 90-308 (377)
9 PRK14276 chaperone protein Dna 100.0 5.3E-34 1.1E-38 258.2 19.9 168 21-198 94-313 (380)
10 PRK14280 chaperone protein Dna 100.0 7.2E-34 1.6E-38 257.0 19.4 167 22-198 92-310 (376)
11 PRK14282 chaperone protein Dna 100.0 8.4E-34 1.8E-38 255.9 19.3 166 24-198 102-320 (369)
12 PRK14286 chaperone protein Dna 100.0 2.1E-33 4.5E-38 253.7 19.5 166 21-198 94-314 (372)
13 PRK14277 chaperone protein Dna 100.0 3.1E-33 6.7E-38 253.6 18.7 168 21-198 100-322 (386)
14 PRK14297 chaperone protein Dna 100.0 4.4E-33 9.6E-38 252.1 19.5 167 22-198 95-315 (380)
15 PRK14301 chaperone protein Dna 100.0 4.8E-33 1E-37 251.4 18.9 166 20-198 90-307 (373)
16 TIGR02349 DnaJ_bact chaperone 100.0 8.9E-33 1.9E-37 247.6 18.6 169 20-198 88-310 (354)
17 PRK14284 chaperone protein Dna 100.0 1.3E-32 2.9E-37 249.8 18.7 163 24-198 105-323 (391)
18 PRK10767 chaperone protein Dna 100.0 1.6E-32 3.6E-37 247.5 19.0 165 21-198 91-305 (371)
19 PRK14295 chaperone protein Dna 100.0 2.1E-32 4.5E-37 248.6 18.9 164 22-198 118-330 (389)
20 PRK14279 chaperone protein Dna 100.0 2.2E-32 4.8E-37 248.6 18.6 163 23-198 123-336 (392)
21 PRK14290 chaperone protein Dna 100.0 4.1E-32 8.9E-37 244.6 19.9 167 20-198 89-313 (365)
22 PRK14294 chaperone protein Dna 100.0 3.1E-32 6.7E-37 245.5 18.8 165 21-198 90-307 (366)
23 PRK14300 chaperone protein Dna 100.0 5.9E-32 1.3E-36 244.2 19.9 166 21-198 93-309 (372)
24 PRK14281 chaperone protein Dna 100.0 8.6E-32 1.9E-36 245.0 18.6 135 54-198 165-329 (397)
25 PRK14291 chaperone protein Dna 100.0 1.3E-30 2.8E-35 236.3 19.8 133 54-198 158-319 (382)
26 PRK14293 chaperone protein Dna 100.0 4.9E-31 1.1E-35 238.3 16.8 168 21-198 85-310 (374)
27 PRK14292 chaperone protein Dna 100.0 8.5E-31 1.8E-35 236.4 17.7 165 23-198 87-305 (371)
28 PRK14283 chaperone protein Dna 100.0 9.1E-30 2E-34 230.3 18.3 164 22-198 98-313 (378)
29 PRK14289 chaperone protein Dna 100.0 8.3E-30 1.8E-34 231.1 17.0 135 54-198 156-321 (386)
30 KOG0712 Molecular chaperone (D 99.9 7.1E-27 1.5E-31 207.8 12.0 162 27-198 83-298 (337)
31 PRK10266 curved DNA-binding pr 99.9 5.9E-22 1.3E-26 174.9 16.0 149 21-198 92-252 (306)
32 PRK14299 chaperone protein Dna 99.9 8.3E-22 1.8E-26 172.9 15.1 132 21-198 96-244 (291)
33 TIGR03835 termin_org_DnaJ term 99.8 1.3E-19 2.9E-24 173.9 12.2 97 91-198 687-789 (871)
34 KOG0713 Molecular chaperone (D 99.5 1.8E-15 4E-20 134.2 -0.1 164 25-197 101-294 (336)
35 PF01556 CTDII: DnaJ C termina 98.9 1.3E-09 2.9E-14 78.5 3.9 44 146-198 1-44 (81)
36 KOG0715 Molecular chaperone (D 98.7 4.7E-08 1E-12 86.2 6.9 95 54-156 166-287 (288)
37 PRK14282 chaperone protein Dna 98.3 1E-06 2.2E-11 79.9 5.2 51 100-150 302-359 (369)
38 PRK14290 chaperone protein Dna 98.0 6.6E-06 1.4E-10 74.6 5.3 50 101-150 296-352 (365)
39 PRK14300 chaperone protein Dna 98.0 2.3E-05 5E-10 71.3 7.8 40 100-139 291-331 (372)
40 PRK14294 chaperone protein Dna 97.9 1.4E-05 3.1E-10 72.5 5.7 48 102-149 291-345 (366)
41 PRK14291 chaperone protein Dna 97.9 3E-05 6.4E-10 70.8 7.7 40 100-139 301-341 (382)
42 PRK14284 chaperone protein Dna 97.9 3.4E-05 7.3E-10 70.7 8.0 39 101-139 306-345 (391)
43 PRK14279 chaperone protein Dna 97.9 3.6E-05 7.9E-10 70.5 8.2 38 102-139 320-357 (392)
44 PRK14285 chaperone protein Dna 97.9 1.2E-05 2.6E-10 73.0 4.9 40 100-139 292-332 (365)
45 PRK10767 chaperone protein Dna 97.9 1E-05 2.2E-10 73.5 4.4 49 102-150 289-344 (371)
46 COG0484 DnaJ DnaJ-class molecu 97.9 4.4E-05 9.6E-10 69.6 8.5 37 103-139 292-329 (371)
47 PRK14295 chaperone protein Dna 97.9 3.5E-05 7.7E-10 70.5 7.4 40 100-139 312-351 (389)
48 PRK14298 chaperone protein Dna 97.9 1.2E-05 2.7E-10 73.2 4.4 48 103-150 293-347 (377)
49 PRK14278 chaperone protein Dna 97.9 6.7E-05 1.5E-09 68.4 8.6 40 100-139 289-329 (378)
50 PRK14276 chaperone protein Dna 97.8 6.9E-05 1.5E-09 68.4 8.0 38 102-139 297-335 (380)
51 PRK14301 chaperone protein Dna 97.8 5.9E-05 1.3E-09 68.7 7.6 37 103-139 292-329 (373)
52 PRK14297 chaperone protein Dna 97.8 8.1E-05 1.8E-09 67.9 8.1 38 102-139 299-337 (380)
53 PRK14299 chaperone protein Dna 97.7 2.2E-05 4.8E-10 69.1 3.6 57 132-198 116-173 (291)
54 PRK14286 chaperone protein Dna 97.7 9.7E-05 2.1E-09 67.3 7.6 40 100-139 296-336 (372)
55 PRK14280 chaperone protein Dna 97.7 0.00013 2.8E-09 66.6 8.2 38 102-139 294-332 (376)
56 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.7 3.9E-05 8.6E-10 53.3 3.2 35 62-98 19-54 (66)
57 PRK14288 chaperone protein Dna 97.7 0.00013 2.9E-09 66.3 7.5 40 100-139 284-324 (369)
58 PF01556 CTDII: DnaJ C termina 97.7 6.7E-05 1.4E-09 53.9 4.2 40 100-139 26-67 (81)
59 TIGR02349 DnaJ_bact chaperone 97.6 0.00018 3.8E-09 64.9 7.8 38 102-139 294-332 (354)
60 PRK14281 chaperone protein Dna 97.6 0.00014 3.1E-09 66.7 7.3 38 102-139 313-351 (397)
61 PRK14287 chaperone protein Dna 97.6 0.00018 3.9E-09 65.5 7.9 38 102-139 289-327 (371)
62 PRK14289 chaperone protein Dna 97.6 0.00018 4E-09 65.7 7.3 39 101-139 304-343 (386)
63 TIGR02642 phage_xxxx uncharact 97.5 9.5E-05 2.1E-09 61.6 4.2 48 62-121 103-150 (186)
64 PRK14283 chaperone protein Dna 97.5 0.00033 7.1E-09 63.9 8.0 38 102-139 297-335 (378)
65 PRK14277 chaperone protein Dna 97.5 0.00039 8.4E-09 63.6 7.9 37 103-139 307-344 (386)
66 PRK14292 chaperone protein Dna 97.5 0.00034 7.4E-09 63.5 7.1 37 103-139 290-327 (371)
67 PRK14293 chaperone protein Dna 97.4 0.00017 3.8E-09 65.6 4.7 48 103-150 295-350 (374)
68 PTZ00037 DnaJ_C chaperone prot 97.3 0.0011 2.3E-08 61.6 8.2 40 100-139 300-343 (421)
69 KOG0714 Molecular chaperone (D 96.9 0.0021 4.5E-08 54.2 5.9 91 97-196 196-295 (306)
70 PLN03165 chaperone protein dna 96.7 0.0033 7.1E-08 48.4 5.2 44 53-98 42-99 (111)
71 PRK10266 curved DNA-binding pr 96.2 0.0055 1.2E-07 54.3 4.3 48 142-198 115-175 (306)
72 PRK14296 chaperone protein Dna 95.8 0.016 3.5E-07 52.9 5.4 37 103-139 302-340 (372)
73 TIGR03835 termin_org_DnaJ term 95.2 0.033 7.1E-07 55.4 5.5 37 103-139 774-810 (871)
74 COG0178 UvrA Excinuclease ATPa 88.5 0.42 9.2E-06 48.1 3.4 77 10-101 690-769 (935)
75 COG1107 Archaea-specific RecJ- 81.3 0.72 1.6E-05 44.8 1.2 17 54-70 4-30 (715)
76 KOG0712 Molecular chaperone (D 75.9 5.8 0.00013 36.1 5.3 50 90-139 266-319 (337)
77 KOG2813 Predicted molecular ch 73.7 2.5 5.4E-05 38.4 2.3 23 85-107 256-278 (406)
78 COG1107 Archaea-specific RecJ- 58.4 5.8 0.00013 38.8 1.7 53 44-96 44-106 (715)
79 TIGR02642 phage_xxxx uncharact 50.4 11 0.00024 31.4 2.0 20 53-72 100-129 (186)
80 PRK00635 excinuclease ABC subu 49.2 4.4 9.6E-05 44.3 -0.8 36 64-104 1613-1649(1809)
81 TIGR00630 uvra excinuclease AB 47.7 11 0.00023 38.7 1.8 40 62-105 740-779 (924)
82 PRK10862 SoxR reducing system 47.4 60 0.0013 26.0 5.7 42 80-121 18-69 (154)
83 PRK00349 uvrA excinuclease ABC 47.0 16 0.00034 37.7 2.8 39 62-105 742-781 (943)
84 KOG2824 Glutaredoxin-related p 38.2 38 0.00082 30.1 3.4 40 54-98 231-275 (281)
85 KOG2813 Predicted molecular ch 35.8 18 0.00038 33.1 1.0 15 55-69 190-209 (406)
86 PF04246 RseC_MucC: Positive r 35.8 64 0.0014 24.8 4.1 24 99-122 40-63 (135)
87 smart00709 Zpr1 Duplicated dom 33.9 2.5E+02 0.0055 22.7 8.4 8 85-92 29-36 (160)
88 PF01333 Apocytochr_F_C: Apocy 33.8 66 0.0014 25.0 3.7 29 169-197 22-54 (118)
89 PF00337 Gal-bind_lectin: Gala 33.7 1.2E+02 0.0025 22.9 5.2 59 104-168 3-73 (133)
90 PF07092 DUF1356: Protein of u 32.0 16 0.00035 31.7 0.1 16 86-101 39-54 (238)
91 cd03031 GRX_GRX_like Glutaredo 30.6 47 0.001 26.5 2.6 40 54-98 101-146 (147)
92 PF02736 Myosin_N: Myosin N-te 30.4 76 0.0016 19.7 3.0 20 167-186 20-39 (42)
93 TIGR00757 RNaseEG ribonuclease 30.0 37 0.00081 31.7 2.2 16 85-100 390-405 (414)
94 PF07295 DUF1451: Protein of u 24.9 54 0.0012 26.3 2.0 15 85-99 130-144 (146)
95 PF12791 RsgI_N: Anti-sigma fa 23.9 1.5E+02 0.0033 19.1 3.8 28 170-197 5-32 (56)
96 COG2214 CbpA DnaJ-class molecu 22.7 90 0.0019 24.4 2.9 43 104-147 179-227 (237)
97 COG1470 Predicted membrane pro 21.7 7.4E+02 0.016 24.0 9.5 50 143-197 408-462 (513)
98 KOG0005 Ubiquitin-like protein 21.6 94 0.002 21.6 2.4 18 172-189 2-19 (70)
99 PF06954 Resistin: Resistin; 21.3 32 0.0007 25.4 0.0 9 159-167 59-67 (88)
100 PF13670 PepSY_2: Peptidase pr 20.8 1.8E+02 0.0039 20.2 3.9 25 171-197 56-80 (83)
101 COG1974 LexA SOS-response tran 20.5 2.6E+02 0.0056 23.5 5.3 46 100-149 112-170 (201)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=291.47 Aligned_cols=172 Identities=26% Similarity=0.452 Sum_probs=147.6
Q ss_pred CcCCCC-chhhHHhhhcCCCCC--CCCCCCCCCCCeEE-------------------ee-eeecCCCCc-----------
Q 039840 16 AFSIVD-LLVLVFDSFFGGGPT--EEDERIAKGDDVWR-------------------EK-NVIKPAPGK----------- 61 (198)
Q Consensus 16 ~f~~~~-~f~diF~~fFGgg~~--~~~~~~~kg~Di~~-------------------~~-~~c~~c~G~----------- 61 (198)
||+.++ +|+|||++|||||++ ++++++++|+|+++ ++ ..|..|+|+
T Consensus 83 g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC 162 (371)
T COG0484 83 GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTC 162 (371)
T ss_pred CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcC
Confidence 455555 599999999976542 33456789999542 22 249999987
Q ss_pred CCCCceeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-
Q 039840 62 RSCNCRNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID- 128 (198)
Q Consensus 62 ~~C~G~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~- 128 (198)
++|+|+|++.+.|.. |++++.+ +++|++|+|.+++++.++++|+||||+.+|++|+++|+|+++++
T Consensus 163 ~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~G 241 (371)
T COG0484 163 PTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNG 241 (371)
T ss_pred CCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCC
Confidence 789999998776422 5655544 78999999999999999999999999999999999999999986
Q ss_pred CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 129 GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 129 ~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+++|||||.|. |+|+|+|||++++|++. +|+||.+++||||||+ ++|+||++||+|+++|
T Consensus 242 gp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~---------~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~r 307 (371)
T COG0484 242 GPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFT---------EAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFR 307 (371)
T ss_pred CCCccEEEEEEeecCCCeEECCCceEeccccCHH---------HHhcCCEEEEEecCCC-EEEecCCCCccCcEEE
Confidence 57899999998 99999999999999999 9999999999999998 9999999999999875
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-35 Score=264.54 Aligned_cols=167 Identities=25% Similarity=0.385 Sum_probs=140.8
Q ss_pred CchhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeE
Q 039840 21 DLLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNE 69 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~ 69 (198)
++|+|+|++|||+|++ +.++++||+|+. +++. .|..|.|+ +.|+|+|.
T Consensus 99 ~~f~d~f~~~fggg~~-~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 177 (372)
T PRK14296 99 SSFTNIFSDFFGSNKS-DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGE 177 (372)
T ss_pred ccchhhhhhhcCCCcc-CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCce
Confidence 3578999999986432 223456788853 2332 49999986 67999998
Q ss_pred EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCC-CCCCcceE
Q 039840 70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPII-DGEPGDLK 135 (198)
Q Consensus 70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~-~~~~GDLi 135 (198)
++.. ++||.++|+.+ .++|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++.+ ++.+|||+
T Consensus 178 ~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~ 257 (372)
T PRK14296 178 VLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLI 257 (372)
T ss_pred EEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEE
Confidence 7654 77885454332 6889999999999999999999999999999999999999975 46799999
Q ss_pred EEEE------eeec-CCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 136 ASFG------LLRE-GNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 136 v~i~------F~R~-G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+ |+|+ |+|||++++|||. |||+|++++|+||||+ +.|++|++|+||+++|
T Consensus 258 v~v~v~~h~~F~R~~G~DL~~~~~Isl~---------eAllG~~~~i~tldG~-~~v~ip~~t~~g~~~r 317 (372)
T PRK14296 258 IDIYLKESKVFEIINNNDILMTYNISYL---------DAILGNEIIIKTLDGD-IKYKLPKSINSNELII 317 (372)
T ss_pred EEEEEeCCCCEEEeCCCcEEEEEecCHH---------HHhCCCEEEeeCCCCC-EEEEECCccCCCcEEE
Confidence 9998 9995 8999999999999 9999999999999998 9999999999999985
No 3
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=268.88 Aligned_cols=165 Identities=26% Similarity=0.489 Sum_probs=141.3
Q ss_pred chhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc----------CCCCceeEEE
Q 039840 22 LLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK----------RSCNCRNEVY 71 (198)
Q Consensus 22 ~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~----------~~C~G~G~~~ 71 (198)
+|.|+|++|||+|++ +++++||+|+. +++. +|..|+|+ +.|+|+|.++
T Consensus 102 d~~d~f~~~Fggg~~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 179 (421)
T PTZ00037 102 DASDLFDLIFGGGRK--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRV 179 (421)
T ss_pred chhhhHHHhhccccc--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEE
Confidence 478999999986431 23356799953 2322 49999986 6799999755
Q ss_pred E-EEeCCeeEEEEe---------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceE
Q 039840 72 H-KQIGPGMFQQMT---------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLK 135 (198)
Q Consensus 72 ~-~~~~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLi 135 (198)
. +++++ |+++++ .++|+.|+|.+++++.++++|+||||+.+|++|+|+|+|++.+++.+|||+
T Consensus 180 ~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLi 258 (421)
T PTZ00037 180 QIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVV 258 (421)
T ss_pred EEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEE
Confidence 4 47787 655543 378999999999999999999999999999999999999998888899999
Q ss_pred EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCC--CCCCeEEC
Q 039840 136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGI--TKPKEVRK 198 (198)
Q Consensus 136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~--t~pg~v~r 198 (198)
|+|+ |+|+|+||+++++|||. +||+|++++|+||||+.+.|++|++ |+||+++|
T Consensus 259 v~I~~~ph~~F~R~G~DL~~~~~Isl~---------eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~ 320 (421)
T PTZ00037 259 FILNEKPHDTFKREGGDLFITKKISLY---------EALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKV 320 (421)
T ss_pred EEEEecCCCCcEEeCCeEEEEEeCCHH---------HHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEE
Confidence 9998 99999999999999999 9999999999999999899999976 99999874
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-34 Score=261.71 Aligned_cols=166 Identities=19% Similarity=0.370 Sum_probs=139.7
Q ss_pred CchhhHHhhhcCCCCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc----------CCCCceeE
Q 039840 21 DLLVLVFDSFFGGGPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK----------RSCNCRNE 69 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~----------~~C~G~G~ 69 (198)
++|.++|++|||+|++ ++..++++|+|+. +++. .|..|.|+ +.|+|+|.
T Consensus 88 ~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 167 (369)
T PRK14288 88 EDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQ 167 (369)
T ss_pred hhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcE
Confidence 4567789998975421 1123356788843 3333 59999986 67999998
Q ss_pred EEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEE
Q 039840 70 VYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKAS 137 (198)
Q Consensus 70 ~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~ 137 (198)
+...+ |++|+.+ .++|+.|+|.+++.+.++++|.||||+++|++|+|+|+|++.+++.+|||+|+
T Consensus 168 ~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~ 244 (369)
T PRK14288 168 VFMRQ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLE 244 (369)
T ss_pred EEEEe---ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEE
Confidence 76555 4554443 68899999999999999999999999999999999999999887789999999
Q ss_pred EE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 138 FG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 138 i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+ |+|+|+||+++++|||. |||+|++++|+||||+.+.|++|++|+||+++|
T Consensus 245 i~v~~h~~f~R~G~DL~~~~~Isl~---------eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 245 ARVKEDEHFKREGCDLFIEAPVFFT---------TIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEECCCcEEeCCEEEEEEecCHH---------HHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 98 99999999999999999 999999999999999889999999999999875
No 5
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-34 Score=259.90 Aligned_cols=169 Identities=22% Similarity=0.406 Sum_probs=143.8
Q ss_pred CCchhhHHhhhcCCCCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCce
Q 039840 20 VDLLVLVFDSFFGGGPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCR 67 (198)
Q Consensus 20 ~~~f~diF~~fFGgg~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~ 67 (198)
+.+|+|+|++|||++++ +..+++++|+|+. +++. .|..|.|+ +.|+|+
T Consensus 85 f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 164 (371)
T PRK14287 85 FGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGS 164 (371)
T ss_pred ccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCE
Confidence 34588999999986432 1223356899953 2332 49999986 579999
Q ss_pred eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840 68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD 133 (198)
Q Consensus 68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD 133 (198)
|.+... +++||++++.+ .++|+.|.|.+++.+.++++|.||+|+++|++|+|+|+|++.++ ..+||
T Consensus 165 G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GD 244 (371)
T PRK14287 165 GQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGD 244 (371)
T ss_pred EEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCcc
Confidence 987654 78899987654 67899999999999999999999999999999999999999865 57899
Q ss_pred eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+|+ |+|+|+||+++++|||. ||++|++++|+||||+ +.|++|+++++|+++|
T Consensus 245 L~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~r 305 (371)
T PRK14287 245 LYVVFNVKPHEFFERDGDDIYCEMPLTFP---------QVALGDEIEVPTLNGK-VKLKIPAGTQTGTSFR 305 (371)
T ss_pred EEEEEEEecCCCEEEecCCeEEEEeccHH---------HHhCCCEEEEEcCCCC-EEEEECCCccCCcEEE
Confidence 999998 99999999999999999 9999999999999998 8999999999999875
No 6
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-34 Score=260.79 Aligned_cols=166 Identities=27% Similarity=0.419 Sum_probs=140.7
Q ss_pred CchhhHHhhhcCCCCCC-CCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCcee
Q 039840 21 DLLVLVFDSFFGGGPTE-EDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRN 68 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~~-~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G 68 (198)
.+|+|||++|||+++++ +.++++||+|+. +++. +|..|+|+ +.|+|+|
T Consensus 94 ~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 173 (365)
T PRK14285 94 EDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG 173 (365)
T ss_pred ccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCce
Confidence 35889999999864211 122356899953 2332 49999986 5799999
Q ss_pred EEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840 69 EVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK 135 (198)
Q Consensus 69 ~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi 135 (198)
.+.. ++||+|+.+ .++|+.|+|++++++.++++|+||||+++|++|+|+|+|++.++ ..+|||+
T Consensus 174 ~~~~---~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~ 250 (365)
T PRK14285 174 RVMQ---GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLY 250 (365)
T ss_pred eEEe---cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEE
Confidence 7664 457775443 78899999999999999999999999999999999999999887 4689999
Q ss_pred EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+ |+|+|+||+++++|||. |||+|++++|+||||+.++|++|++++||+++|
T Consensus 251 v~i~v~~h~~f~R~G~dL~~~~~Isl~---------eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~ir 310 (365)
T PRK14285 251 IKILIKPHKIFKRNGKDLYATLPISFT---------QAALGKEIKIQTIASKKIKIKIPKGTENDEQII 310 (365)
T ss_pred EEEEEecCCCeEEeccceEEEEecCHH---------HHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEE
Confidence 9998 99999999999999999 999999999999999889999999999999875
No 7
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-34 Score=260.48 Aligned_cols=169 Identities=28% Similarity=0.436 Sum_probs=143.5
Q ss_pred CchhhHHhhhcCCCCCC-C-CCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCce
Q 039840 21 DLLVLVFDSFFGGGPTE-E-DERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCR 67 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~~-~-~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~ 67 (198)
++|+|+|++|||+++++ + ..+++||+|+. +++. .|..|.|+ +.|+|+
T Consensus 86 ~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~ 165 (378)
T PRK14278 86 GGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGR 165 (378)
T ss_pred CchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCc
Confidence 45889999999864311 1 12356788843 2332 49999986 579999
Q ss_pred eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840 68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD 133 (198)
Q Consensus 68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD 133 (198)
|.+... ++++|++++.+ .++|+.|+|++++.+.++++|.||||+++|++|+|+|+|++.++ ..+||
T Consensus 166 G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 245 (378)
T PRK14278 166 GEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGD 245 (378)
T ss_pred eEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCC
Confidence 987655 67788887654 68899999999999999999999999999999999999999886 46899
Q ss_pred eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+|+ |+|+|+||+++++|||. +|++|++++|+|||+..+.|++|++++||+++|
T Consensus 246 L~v~i~~~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lr 307 (378)
T PRK14278 246 LYVEVHEQPHDVFVRDGDDLHCTVSVPMV---------DAALGTTVTVEAILDGPSEITIPPGTQPGSVIT 307 (378)
T ss_pred EEEEEEECcCCCEEEcCCCEEEEEecCHH---------HHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEE
Confidence 999998 99999999999999999 999999999999977779999999999999875
No 8
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-34 Score=261.31 Aligned_cols=168 Identities=23% Similarity=0.374 Sum_probs=141.1
Q ss_pred CchhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeE
Q 039840 21 DLLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNE 69 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~ 69 (198)
++|.|+|++|||++++++.++++||.|+. +++. .|..|.|+ +.|+|+|.
T Consensus 90 ~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 169 (377)
T PRK14298 90 GGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQ 169 (377)
T ss_pred CcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccE
Confidence 45889999999864321223456899953 2332 49999986 67999998
Q ss_pred EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840 70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK 135 (198)
Q Consensus 70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi 135 (198)
+... ++++|++|..+ .++|+.|+|++++.+.++++|+||||+++|++|+|+|+|++.+. +.+|||+
T Consensus 170 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~ 249 (377)
T PRK14298 170 VTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLY 249 (377)
T ss_pred EEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEE
Confidence 8765 44445554333 68899999999999999999999999999999999999999754 6799999
Q ss_pred EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+ |+|+|+||+++++|||. |||+|++++|+||||+ +.|++|++++||+++|
T Consensus 250 i~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~-i~v~ip~g~~~g~~lr 308 (377)
T PRK14298 250 IVLHVKEHDYFERVGDDIISEIPISFT---------QAALGADIMVPTLYGK-VKMNIPPGTQTHSVFR 308 (377)
T ss_pred EEEEEecCCCeEEEcCcEEEEEEeCHH---------HHhCCCeEEEecCCCC-EEEEeCCCcccCCEEE
Confidence 9998 99999999999999999 9999999999999998 8999999999999875
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.3e-34 Score=258.17 Aligned_cols=168 Identities=25% Similarity=0.449 Sum_probs=143.9
Q ss_pred CchhhHHhhhcCCCCC-CCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCcee
Q 039840 21 DLLVLVFDSFFGGGPT-EEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCRN 68 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~-~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~G 68 (198)
.+|+|+|++|||++++ +...++++|+|+.+ ++. .|..|.|+ +.|+|+|
T Consensus 94 ~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 173 (380)
T PRK14276 94 GGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSG 173 (380)
T ss_pred cchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCee
Confidence 4588999999986432 12234568899532 222 49999886 5799999
Q ss_pred EEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcce
Q 039840 69 EVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDL 134 (198)
Q Consensus 69 ~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDL 134 (198)
.+... ++++|++|+.+ +++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++.++ ..+|||
T Consensus 174 ~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL 253 (380)
T PRK14276 174 VITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDL 253 (380)
T ss_pred EEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCE
Confidence 87654 78899988754 68899999999999999999999999999999999999999876 468999
Q ss_pred EEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 135 KASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 135 iv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+|+|+ |+|+|+||+++++|||. +|++|++++|+||||+ +.|++|++++||+++|
T Consensus 254 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~v~tldg~-i~v~ip~g~~~g~~~~ 313 (380)
T PRK14276 254 YVVFRVEPSKKFERDGSTIYYTLPISFV---------QAALGDTVEVPTVHGD-VELKIPAGTQTGKKFR 313 (380)
T ss_pred EEEEEEEECcceeeecceEEEEEecCHH---------HHhCCCeEEEEcCCCc-EEEEECCCCCCCCEEE
Confidence 99998 99999999999999999 9999999999999998 8999999999999875
No 10
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.2e-34 Score=256.98 Aligned_cols=167 Identities=25% Similarity=0.431 Sum_probs=142.7
Q ss_pred chhhHHhhhcCCCCCC-CCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeE
Q 039840 22 LLVLVFDSFFGGGPTE-EDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNE 69 (198)
Q Consensus 22 ~f~diF~~fFGgg~~~-~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~ 69 (198)
+|+|+|++|||+++++ ..++++||+|+. +++. .|..|.|+ +.|+|+|.
T Consensus 92 ~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 171 (376)
T PRK14280 92 GFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQ 171 (376)
T ss_pred cchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEE
Confidence 4789999999864321 123356899953 2332 49999886 57999998
Q ss_pred EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840 70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK 135 (198)
Q Consensus 70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi 135 (198)
+... ++++|++++.+ .++|+.|+|.+++.+.++++|.||+|+++|++|+|+|+|++.++ ..+|||+
T Consensus 172 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~ 251 (376)
T PRK14280 172 VSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLY 251 (376)
T ss_pred EEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEE
Confidence 7654 77889887654 68899999999999999999999999999999999999999776 5789999
Q ss_pred EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+ |+|+|+||+++++|||. |||+|++++|+||||+ +.|++|++++||+++|
T Consensus 252 v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldg~-i~v~ip~g~~~g~~~~ 310 (376)
T PRK14280 252 VVFRVRPHEFFERDGDDIYCEMPLTFA---------QAALGDEIEVPTLHGK-VKLKIPAGTQTGTQFR 310 (376)
T ss_pred EEEEEecCCCeEEecCCEEEEEecCHH---------HHhCCCEEEEecCCce-EEEEECCCCCCCcEEE
Confidence 9998 99999999999999999 9999999999999997 8999999999999874
No 11
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.4e-34 Score=255.90 Aligned_cols=166 Identities=25% Similarity=0.368 Sum_probs=142.0
Q ss_pred hhHHhhhcCCCCC--CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeEE
Q 039840 24 VLVFDSFFGGGPT--EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNEV 70 (198)
Q Consensus 24 ~diF~~fFGgg~~--~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~~ 70 (198)
.|+|++|||++++ +++.+++||+|+. +++. +|..|.|+ +.|+|+|.+
T Consensus 102 ~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 181 (369)
T PRK14282 102 RDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRI 181 (369)
T ss_pred chhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEE
Confidence 3899999985321 1123356789943 2332 49999986 679999987
Q ss_pred EEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEE
Q 039840 71 YHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKA 136 (198)
Q Consensus 71 ~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv 136 (198)
+.. +++|||+|+.+ .++|+.|+|.+++.+.++++|+||||+.+|++|+|+|+|++.+. ..+|||+|
T Consensus 182 ~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i 261 (369)
T PRK14282 182 REERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYV 261 (369)
T ss_pred EEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEE
Confidence 654 78999987765 67899999999999999999999999999999999999999765 57899999
Q ss_pred EEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 137 SFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 137 ~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+|+ |+|+|+||+++++|||. ||++|++++|+||||+.+.|+||+++++|++++
T Consensus 262 ~i~v~~h~~F~r~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~ir 320 (369)
T PRK14282 262 IVRVRPDPRFKRSGSDLIYDVTIDYL---------QAILGTTVEVPLPEGGTTMLKIPPGTQPETVFR 320 (369)
T ss_pred EEEEecCCcEEEecCCEEEEEEeCHH---------HHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEE
Confidence 998 99999999999999999 999999999999999989999999999999875
No 12
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-33 Score=253.72 Aligned_cols=166 Identities=23% Similarity=0.408 Sum_probs=140.0
Q ss_pred CchhhHHhhhcCCCC-C----CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCC
Q 039840 21 DLLVLVFDSFFGGGP-T----EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSC 64 (198)
Q Consensus 21 ~~f~diF~~fFGgg~-~----~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C 64 (198)
++|+|+|++|||+++ + .+.++++||+|+. +++. +|..|.|+ +.|
T Consensus 94 ~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 173 (372)
T PRK14286 94 GDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDC 173 (372)
T ss_pred cchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCC
Confidence 468899999998542 1 1123356789953 2322 49999986 579
Q ss_pred CceeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCC
Q 039840 65 NCRNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEP 131 (198)
Q Consensus 65 ~G~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~ 131 (198)
+|+|.+...+ |++|+.+ .++|+.|+|.+++++.+.++|+||||+++|++|+|+|+|++.++ ..+
T Consensus 174 ~G~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~ 250 (372)
T PRK14286 174 GGSGQIRRTQ---GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPH 250 (372)
T ss_pred cCeEEEEEEe---ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCC
Confidence 9999876654 5665433 68899999999999999999999999999999999999999876 468
Q ss_pred cceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 132 GDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 132 GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|||+|+|+ |+|+|+||+++++|+|. +||+|++++|+||||+.+.|++|++++||+++|
T Consensus 251 GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~r 314 (372)
T PRK14286 251 GDLYVVTHIKKHELFERQGNDLILVRKISLA---------QAILGAEIEVPTIDGKKAKMKIPEGTESGQVFR 314 (372)
T ss_pred ceEEEEEEEccCCCEEEecCCEEEEEEECHH---------HHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEE
Confidence 99999998 99999999999999999 999999999999999989999999999999875
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-33 Score=253.62 Aligned_cols=168 Identities=26% Similarity=0.387 Sum_probs=140.9
Q ss_pred CchhhHHhhhcCC---CCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCC
Q 039840 21 DLLVLVFDSFFGG---GPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCN 65 (198)
Q Consensus 21 ~~f~diF~~fFGg---g~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~ 65 (198)
++|.|+|++||++ |++ +..++++||+|+. +++. .|..|.|+ +.|+
T Consensus 100 ~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 179 (386)
T PRK14277 100 GGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCH 179 (386)
T ss_pred cchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCC
Confidence 3466778777763 111 1123356889853 2332 49999885 5799
Q ss_pred ceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCC
Q 039840 66 CRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEP 131 (198)
Q Consensus 66 G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~ 131 (198)
|+|.+... +++||++|+.+ .++|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++.+. ..+
T Consensus 180 G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~ 259 (386)
T PRK14277 180 GTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPN 259 (386)
T ss_pred CEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCC
Confidence 99987654 78999988765 68899999999999999999999999999999999999999765 578
Q ss_pred cceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 132 GDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 132 GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|||+|+|+ |+|+|+||+++++|||. +||+|++++|+||||+ +.|++|++++||+++|
T Consensus 260 GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~r 322 (386)
T PRK14277 260 GDLYIVIKVKPHPLFKREGYNVYLEMPITFT---------DAALGGEIEIPTLDGK-VKFTIPEGTQTGTKFR 322 (386)
T ss_pred ccEEEEEEEecCCCeEEecCCEEEEEEcCHH---------HHhCCCEEEEEcCCCC-EEEEECCCCCCCCEEE
Confidence 99999998 99999999999999999 9999999999999998 8999999999999875
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-33 Score=252.09 Aligned_cols=167 Identities=25% Similarity=0.430 Sum_probs=141.7
Q ss_pred chhhHHhhhcCCC--CC-CCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCce
Q 039840 22 LLVLVFDSFFGGG--PT-EEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCR 67 (198)
Q Consensus 22 ~f~diF~~fFGgg--~~-~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~ 67 (198)
+|+|||++|||++ +. ++..+++||+|+.+ ++. .|..|.|+ +.|+|+
T Consensus 95 ~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 174 (380)
T PRK14297 95 GFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGT 174 (380)
T ss_pred chhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCe
Confidence 5889999999853 11 12233567999532 322 48999886 679999
Q ss_pred eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840 68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD 133 (198)
Q Consensus 68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD 133 (198)
|.+... ++++|++++.+ .++|..|+|.+++++.++++|+||||+++|++|+++|+|++.+. ..+||
T Consensus 175 G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GD 254 (380)
T PRK14297 175 GQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGD 254 (380)
T ss_pred EEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCcc
Confidence 987654 78888876654 67899999999999999999999999999999999999999775 46899
Q ss_pred eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+|+ |+|+|+||+++++|||. |||+|++++|+||||+ +.|++|++++||+++|
T Consensus 255 L~v~v~v~~h~~f~R~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldg~-~~v~ip~g~~~g~~~r 315 (380)
T PRK14297 255 LYINIRVAPHKTFKRKGFDIYIDKHISFA---------KAALGTEIKVPTVDGE-VKYEVPAGTQPGTVFR 315 (380)
T ss_pred EEEEEEEcCCCCEEEeCCCEEEEEEeCHH---------HHhCCCcEEEEcCCCc-EEEEECCCcCCCCEEE
Confidence 999998 99999999999999999 9999999999999997 8999999999999875
No 15
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.8e-33 Score=251.44 Aligned_cols=166 Identities=27% Similarity=0.436 Sum_probs=139.2
Q ss_pred CCchhhHHhhhcCCCCC--CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCc
Q 039840 20 VDLLVLVFDSFFGGGPT--EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNC 66 (198)
Q Consensus 20 ~~~f~diF~~fFGgg~~--~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G 66 (198)
++.|+|+|++|||+|++ .+..++.||+|+. +++. .|..|.|+ +.|+|
T Consensus 90 ~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 169 (373)
T PRK14301 90 FSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGG 169 (373)
T ss_pred ccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccC
Confidence 34678999999974321 1223456899953 2332 49999986 67999
Q ss_pred eeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840 67 RNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD 133 (198)
Q Consensus 67 ~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD 133 (198)
+|.+...+ |++|+.+ .++|+.|+|.+++.+.++++|+||+|+++|++|+|+|+|++.+. +.+||
T Consensus 170 ~G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 246 (373)
T PRK14301 170 SGQVRQSQ---GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGD 246 (373)
T ss_pred eeEEEEEe---eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcC
Confidence 99876544 5555443 68899999999999999999999999999999999999999775 57899
Q ss_pred eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+|+ |+|+|+||+++++|||. +||+|++++|+||||+ +.|++|++++||+++|
T Consensus 247 Liv~i~v~~h~~f~r~G~DL~~~~~Isl~---------eAl~G~~~~v~tldG~-i~v~ip~g~~~g~~~r 307 (373)
T PRK14301 247 LYVVITVEDDKIFQRQGQDLVVTQEISFV---------QAALGDRIEVPTLDDP-VTLDIPKGTQSGEVFR 307 (373)
T ss_pred EEEEEEEEECCCceeecCcEEEEEEecHH---------HHhCCCeEEEecCCcc-EEEEECCCcCCCcEEE
Confidence 999998 99999999999999999 9999999999999998 9999999999999875
No 16
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=8.9e-33 Score=247.61 Aligned_cols=169 Identities=27% Similarity=0.431 Sum_probs=143.5
Q ss_pred CCchhhHHhhhcCCCCC--C-CCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCC
Q 039840 20 VDLLVLVFDSFFGGGPT--E-EDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCN 65 (198)
Q Consensus 20 ~~~f~diF~~fFGgg~~--~-~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~ 65 (198)
+++|+|+|++|||++.+ + +..+++||+|+. +++. +|..|.|+ +.|+
T Consensus 88 ~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 167 (354)
T TIGR02349 88 FGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCG 167 (354)
T ss_pred cCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCC
Confidence 34688999999985321 1 123456788853 2222 48999886 5799
Q ss_pred ceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCC
Q 039840 66 CRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEP 131 (198)
Q Consensus 66 G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~ 131 (198)
|+|.+... +++||++|+.+ .++|+.|+|++++.+.+.++|+||+|+++|++|+|+|+|++.+. ..+
T Consensus 168 G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~ 247 (354)
T TIGR02349 168 GTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPN 247 (354)
T ss_pred CeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCCCC
Confidence 99987654 78999988755 67899999999999999999999999999999999999998765 578
Q ss_pred cceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 132 GDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 132 GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|||+|+|+ |+|+|+||+++++|||. +||+|++++|+|||| .+.|++|++++||++++
T Consensus 248 GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~---------eAl~G~~~~i~~ldG-~i~v~ip~g~~~g~~~~ 310 (354)
T TIGR02349 248 GDLYVVIRVKPHKIFERDGNDLYIEVPISFT---------QAILGGEIEVPTLDG-DVKLKIPAGTQSGTVFR 310 (354)
T ss_pred CCEEEEEEEecCcceEEecCCEEEEEEeCHH---------HHhCCCeEEEecCCc-eEEEEECCcccCCcEEE
Confidence 99999998 99999999999999999 999999999999999 49999999999999874
No 17
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-32 Score=249.82 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=136.5
Q ss_pred hhHHhhhcCCCC---C-C-CCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCce
Q 039840 24 VLVFDSFFGGGP---T-E-EDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCR 67 (198)
Q Consensus 24 ~diF~~fFGgg~---~-~-~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~ 67 (198)
.|+|++|||+++ + + +..++++|+|+.+ ++. .|..|.|+ +.|+|+
T Consensus 105 ~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 184 (391)
T PRK14284 105 GSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGS 184 (391)
T ss_pred ccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCe
Confidence 688999997521 1 1 1233467888543 332 49999886 679999
Q ss_pred eEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcce
Q 039840 68 NEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDL 134 (198)
Q Consensus 68 G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDL 134 (198)
|.+..++ |++|+.+ .++|+.|+|.+++++.++++|+||||+++|++|+|+|+|++.++ +.+|||
T Consensus 185 G~v~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL 261 (391)
T PRK14284 185 GQVVQSR---GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDL 261 (391)
T ss_pred eEEEEEe---ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCE
Confidence 9877555 4555333 68899999999999999999999999999999999999999886 578999
Q ss_pred EEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCC-CcEEEEeeCCCCCCCeEEC
Q 039840 135 KASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLD-GHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 135 iv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ld-G~~~~i~~~~~t~pg~v~r 198 (198)
+|+|+ |+|+|+||+++++|||. ||++|++++|+||| |+.+.|+||++++||+++|
T Consensus 262 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~ 323 (391)
T PRK14284 262 YVFIDVEPHPVFERRGDDLILELPIGFV---------DAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILK 323 (391)
T ss_pred EEEEEEecCCCceeecCCEEEEEEecHH---------HHhCCCeEEEeecCCCcEEEEEECCccCCCeEEE
Confidence 99998 99999999999999999 99999999999999 6679999999999999875
No 18
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-32 Score=247.49 Aligned_cols=165 Identities=25% Similarity=0.450 Sum_probs=137.7
Q ss_pred CchhhHHhhhcCCCCCCCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCceeE
Q 039840 21 DLLVLVFDSFFGGGPTEEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCRNE 69 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~G~ 69 (198)
+.|.|+|++|||++++++.++++||+|+.+ ++. .|..|.|+ +.|+|+|.
T Consensus 91 ~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 170 (371)
T PRK10767 91 DIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQ 170 (371)
T ss_pred cchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeE
Confidence 447889999997532212234568999542 222 48999886 57999998
Q ss_pred EEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEE
Q 039840 70 VYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKA 136 (198)
Q Consensus 70 ~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv 136 (198)
+...+ ||+|+.+ .++|+.|+|++++++.+.++|.||||+.+|++|+|+|+|++.+. ..+|||+|
T Consensus 171 ~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v 247 (371)
T PRK10767 171 VRMQQ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYV 247 (371)
T ss_pred EEEee---ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEE
Confidence 76655 4554332 67899999999999999999999999999999999999999654 57999999
Q ss_pred EEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 137 SFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 137 ~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+|+ |+|+|+||+++++|||. +||+|++++|+||||. +.|++|++++||+++|
T Consensus 248 ~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~-i~v~ip~g~~~g~~~~ 305 (371)
T PRK10767 248 QIHVKEHPIFERDGNDLYCEVPISFT---------TAALGGEIEVPTLDGR-VKLKIPEGTQTGKLFR 305 (371)
T ss_pred EEEEeeCCCEEEecCCEEEEEEeCHH---------HHhCCCeEEEecCCCc-EEEEeCCCCCCCCEEE
Confidence 998 99999999999999999 9999999999999995 9999999999999875
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-32 Score=248.55 Aligned_cols=164 Identities=26% Similarity=0.374 Sum_probs=137.2
Q ss_pred chhhHHhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeEE
Q 039840 22 LLVLVFDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNEV 70 (198)
Q Consensus 22 ~f~diF~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~~ 70 (198)
.|+|+|++|||+++ +..+++||+|+. +++. +|.+|.|+ +.|+|+|.+
T Consensus 118 ~f~d~f~~~fg~~~--~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 195 (389)
T PRK14295 118 GLGDVFGGLFNRGG--RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQV 195 (389)
T ss_pred chhhhhcccccCCC--CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEE
Confidence 36788999997542 123356789853 2322 49999886 579999987
Q ss_pred EEEEeCCeeEEEEe-----------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEE
Q 039840 71 YHKQIGPGMFQQMT-----------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASF 138 (198)
Q Consensus 71 ~~~~~~~g~~~~~~-----------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i 138 (198)
...+ | +|.++.. .++|+.|+|++++.+.++++|+||+|+++|++|+|+|+|++.+. ..+|||+|+|
T Consensus 196 ~~~~-g-~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i 273 (389)
T PRK14295 196 SRNS-G-GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVV 273 (389)
T ss_pred EEEe-c-ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEE
Confidence 7665 3 2322222 68899999999999999999999999999999999999998765 5789999999
Q ss_pred E------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 139 G------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 139 ~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+ |+|+|+||+++++|||. +|++|++++|+||||+.+.|++|++++||+++|
T Consensus 274 ~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir 330 (389)
T PRK14295 274 HVDPHPVFGRSGDNLTVTVPVTFP---------EAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR 330 (389)
T ss_pred EEecCCCEEEecCCEEEEEeecHH---------HHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence 8 99999999999999999 999999999999999889999999999999875
No 20
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-32 Score=248.56 Aligned_cols=163 Identities=23% Similarity=0.419 Sum_probs=136.2
Q ss_pred hhhHHhhhcCCCCC-CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCceeEE
Q 039840 23 LVLVFDSFFGGGPT-EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRNEV 70 (198)
Q Consensus 23 f~diF~~fFGgg~~-~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G~~ 70 (198)
|+|+|++|||++++ .+..+++||+|+. +++. .|..|+|+ +.|+|+|.+
T Consensus 123 f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 202 (392)
T PRK14279 123 IGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVI 202 (392)
T ss_pred hhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEE
Confidence 56888999975321 1223456789853 2222 49999986 679999987
Q ss_pred EEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEE
Q 039840 71 YHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKAS 137 (198)
Q Consensus 71 ~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~ 137 (198)
...+ |++++.+ .++|+.|+|.+++++.++++|+||||+++|++|+|+|+|++.++ ..+|||+|+
T Consensus 203 ~~~~---g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~ 279 (392)
T PRK14279 203 SRNQ---GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVT 279 (392)
T ss_pred EEEe---cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEE
Confidence 7655 3333222 78899999999999999999999999999999999999999886 468999999
Q ss_pred EE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 138 FG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 138 i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+ |+|+|+||+++++|||. +|++|++++|+||||+ +.|+||++++||+++|
T Consensus 280 i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~v~~ldg~-i~v~Ip~g~~~g~~ir 336 (392)
T PRK14279 280 VHVRPDKVFGRDGDDLTVTVPVSFT---------ELALGSTLSVPTLDGP-VGVKVPAGTADGRILR 336 (392)
T ss_pred EEEecCCcceeecCcEEEEEEccHH---------HHcCCceEEEEcCCce-EEEEECCCCCCCCEEE
Confidence 98 99999999999999999 9999999999999998 9999999999999875
No 21
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-32 Score=244.63 Aligned_cols=167 Identities=23% Similarity=0.376 Sum_probs=136.9
Q ss_pred CCchhhHHhhhcCCC-C-----C--CCCCCCCCCCCeEE-------------------eee-eecCCCCc----------
Q 039840 20 VDLLVLVFDSFFGGG-P-----T--EEDERIAKGDDVWR-------------------EKN-VIKPAPGK---------- 61 (198)
Q Consensus 20 ~~~f~diF~~fFGgg-~-----~--~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~---------- 61 (198)
+.+|+|+|++|||++ + + +..+.+++++|+++ ++. +|..|+|+
T Consensus 89 ~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C 168 (365)
T PRK14290 89 FSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITC 168 (365)
T ss_pred ccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccC
Confidence 346889999999852 1 1 11112234788532 222 48899886
Q ss_pred CCCCceeEEEEEEeCCeeEEEEe--------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCC
Q 039840 62 RSCNCRNEVYHKQIGPGMFQQMT--------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPII 127 (198)
Q Consensus 62 ~~C~G~G~~~~~~~~~g~~~~~~--------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~ 127 (198)
+.|+|+|.+...+ .+|++++.. +++|+.|+|++++.+.+.++|.||||+.+|++|+|+|+|++ +
T Consensus 169 ~~C~G~G~~~~~~-~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~ 246 (365)
T PRK14290 169 PTCHGTGQQRIVR-GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS-Y 246 (365)
T ss_pred CCCCCcCEEEEEe-ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC-C
Confidence 6799999866554 456653321 78899999999999999999999999999999999999986 5
Q ss_pred CCCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 128 DGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 128 ~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
++.+|||+|+|+ |+|+|+||+++++|||. +|++|++++|+|++|. ++|+||+++++|+++|
T Consensus 247 ~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~I~~~~g~-i~V~Ip~g~~~g~~ir 313 (365)
T PRK14290 247 GGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFP---------QAALGGEIEIKLFREK-YNLKIPEGTQPGEVLK 313 (365)
T ss_pred CCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHH---------HHhCCCEEEEEcCCce-EEEEECCccCCCcEEE
Confidence 678999999998 99999999999999999 9999999999999996 9999999999999875
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-32 Score=245.52 Aligned_cols=165 Identities=27% Similarity=0.497 Sum_probs=137.5
Q ss_pred CchhhHHhhhcC-CCCC--CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCc
Q 039840 21 DLLVLVFDSFFG-GGPT--EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNC 66 (198)
Q Consensus 21 ~~f~diF~~fFG-gg~~--~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G 66 (198)
++|.|+|++||| ++++ ++..+++||+|+. +++. .|..|.|+ +.|+|
T Consensus 90 ~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G 169 (366)
T PRK14294 90 SSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGG 169 (366)
T ss_pred hhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCC
Confidence 457899999998 3221 1112356788843 2322 48999885 67999
Q ss_pred eeEEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcc
Q 039840 67 RNEVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGD 133 (198)
Q Consensus 67 ~G~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GD 133 (198)
+|.+...+ |++|+.+ .++|+.|+|.+++.+.+.++|.||||+++|++|+|+|+|++.+. +.+||
T Consensus 170 ~G~~~~~~---G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GD 246 (366)
T PRK14294 170 SGQVTQSQ---GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGD 246 (366)
T ss_pred eEEEEEEe---eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCc
Confidence 99876543 5665433 68899999999999999999999999999999999999999765 57999
Q ss_pred eEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 134 LKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 134 Liv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+|+ |+|+|+||+++++|||. +||+|++++|+||||+ +.|++|++++||+++|
T Consensus 247 l~v~i~v~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~ir 307 (366)
T PRK14294 247 LYVFLTVEPHEFFERDGNDVHCKVPISFV---------QAALGAQIEVPTLEGE-RELKIPKGTQPGDIFR 307 (366)
T ss_pred EEEEEEEccCCcceecCCCEEEEEEeCHH---------HHhCCCeEEEECCCCc-EEEEECCCcCCCCEEE
Confidence 999998 99999999999999999 9999999999999997 7999999999999875
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-32 Score=244.23 Aligned_cols=166 Identities=22% Similarity=0.421 Sum_probs=135.6
Q ss_pred CchhhHHhhhcCCCCCCCC-CCCCCCCCeE-------------------Eeee-eecCCCCc-----------CCCCcee
Q 039840 21 DLLVLVFDSFFGGGPTEED-ERIAKGDDVW-------------------REKN-VIKPAPGK-----------RSCNCRN 68 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~~~~-~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~~C~G~G 68 (198)
+.|.++|++|||+++.+.. ..+.||+|+. +++. .|..|.|+ +.|+|+|
T Consensus 93 ~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G 172 (372)
T PRK14300 93 DIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG 172 (372)
T ss_pred hhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeE
Confidence 3456666666654321111 1235788853 2332 48999986 5799999
Q ss_pred EEEEEEeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840 69 EVYHKQIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK 135 (198)
Q Consensus 69 ~~~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi 135 (198)
.++..+ ||+|+.+ .++|+.|+|++++.+.+.++|.||+|+++|++|+++|+|++.+. ..+|||+
T Consensus 173 ~~~~~~---g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~ 249 (372)
T PRK14300 173 ATRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLY 249 (372)
T ss_pred EEEEee---ceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEE
Confidence 876543 5665433 78899999999999999999999999999999999999999754 5799999
Q ss_pred EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+ |+|+|+||+++++|+|. +|++|++++|+||||+.++|+||++++||+++|
T Consensus 250 v~i~v~~h~~f~R~G~Dl~~~~~Isl~---------~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~ir 309 (372)
T PRK14300 250 VDIAIKPHDIYKVDGANLHCKLPISFV---------NAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLR 309 (372)
T ss_pred EEEEECCCCCeEEecCCEEEEEecCHH---------HHhCCCEEEEecCCCCEEEEEECCccCCCcEEE
Confidence 9998 99999999999999999 999999999999999889999999999999875
No 24
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.6e-32 Score=245.04 Aligned_cols=135 Identities=24% Similarity=0.431 Sum_probs=123.5
Q ss_pred eecCCCCc----------CCCCceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCC
Q 039840 54 VIKPAPGK----------RSCNCRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKG 110 (198)
Q Consensus 54 ~c~~c~G~----------~~C~G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G 110 (198)
.|..|.|+ +.|+|+|.+... ++++|++++.+ +++|+.|+|.+++.+.++++|+||||
T Consensus 165 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G 244 (397)
T PRK14281 165 PCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAG 244 (397)
T ss_pred cCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCCC
Confidence 48999886 679999987654 77888887654 68899999999999999999999999
Q ss_pred CCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEE
Q 039840 111 MQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLV 183 (198)
Q Consensus 111 ~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~ 183 (198)
+++|++|+|+|+|++.++ +.+|||+|+|+ |+|+|+||+++++|||. |||+|++++|+||||+ +
T Consensus 245 ~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~---------eAl~G~~~~i~tldg~-i 314 (397)
T PRK14281 245 VQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYP---------DLVLGTKVEVPTLDGA-V 314 (397)
T ss_pred CCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHH---------HHhcCCeEEeecCCcc-E
Confidence 999999999999999886 57999999998 99999999999999999 9999999999999997 8
Q ss_pred EEeeCCCCCCCeEEC
Q 039840 184 DISTKGITKPKEVRK 198 (198)
Q Consensus 184 ~i~~~~~t~pg~v~r 198 (198)
.|+||++++||+++|
T Consensus 315 ~v~ip~g~~~G~~~r 329 (397)
T PRK14281 315 KLTIPAGTQPETMLR 329 (397)
T ss_pred EEEeCCccCCCcEEE
Confidence 999999999999875
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.3e-30 Score=236.25 Aligned_cols=133 Identities=26% Similarity=0.410 Sum_probs=119.5
Q ss_pred eecCCCCc-----------CCCCceeEEEEEEeCCeeEEEEe-----------cccccccCCeeEeeecEEEEEEecCCC
Q 039840 54 VIKPAPGK-----------RSCNCRNEVYHKQIGPGMFQQMT-----------EQVCEQCQNVKYEREGYFVTVDIEKGM 111 (198)
Q Consensus 54 ~c~~c~G~-----------~~C~G~G~~~~~~~~~g~~~~~~-----------~~~C~~C~G~g~~~~~~~l~V~IP~G~ 111 (198)
+|..|+|+ +.|+|+|.++..+ |++++.+ .++|+.|+|.+++.+.++++|+||||+
T Consensus 158 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~ 234 (382)
T PRK14291 158 PCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG---GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGV 234 (382)
T ss_pred cCCCCccccCCCCCCCccCCCCCCceEEEEec---ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCC
Confidence 48999886 6799999876553 3444332 688999999999999999999999999
Q ss_pred CCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEE
Q 039840 112 QDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVD 184 (198)
Q Consensus 112 ~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~ 184 (198)
.+|++|+|+|+|++.+. +.+|||+|+|+ |+|+|+||+++++|||. +|++|++++|+||||+.+.
T Consensus 235 ~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~~l~ 305 (382)
T PRK14291 235 DNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVA---------EAVLGTELEVPLLDGKKEK 305 (382)
T ss_pred CCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHH---------HHhCCCEEEEecCCCCEEE
Confidence 99999999999999774 68999999998 99999999999999999 9999999999999998899
Q ss_pred EeeCCCCCCCeEEC
Q 039840 185 ISTKGITKPKEVRK 198 (198)
Q Consensus 185 i~~~~~t~pg~v~r 198 (198)
|++|++++||++++
T Consensus 306 V~Ip~g~~~G~~i~ 319 (382)
T PRK14291 306 VKIPPGTKEGDKIR 319 (382)
T ss_pred EEECCccCCCCEEE
Confidence 99999999999874
No 26
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=4.9e-31 Score=238.29 Aligned_cols=168 Identities=23% Similarity=0.448 Sum_probs=140.6
Q ss_pred CchhhHHhhhcCC-CC-C-----CCCCCCCCCCCeE-------------------Eeee-eecCCCCc-----------C
Q 039840 21 DLLVLVFDSFFGG-GP-T-----EEDERIAKGDDVW-------------------REKN-VIKPAPGK-----------R 62 (198)
Q Consensus 21 ~~f~diF~~fFGg-g~-~-----~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~-----------~ 62 (198)
.+|.|+|++|||+ ++ + ++.+++.|++|++ +++. .|..|.|+ +
T Consensus 85 ~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 164 (374)
T PRK14293 85 GGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCS 164 (374)
T ss_pred cchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCC
Confidence 3478999999973 11 1 0112345788853 2322 48899885 5
Q ss_pred CCCceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-
Q 039840 63 SCNCRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID- 128 (198)
Q Consensus 63 ~C~G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~- 128 (198)
.|+|+|.+... +++||++++.+ +++|+.|.|.+++.+.+.++|+||||+++|++|+|+|+|++.+.
T Consensus 165 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~ 244 (374)
T PRK14293 165 TCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRG 244 (374)
T ss_pred CCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCC
Confidence 79999987655 78899987654 67899999999999999999999999999999999999998764
Q ss_pred CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 129 GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 129 ~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
..+|||+|+|+ |+|+|+||+++++|||. ||++|++++|+||||+ +.|++|++++||+++|
T Consensus 245 ~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~---------eAl~G~~~~i~~ldG~-~~i~ip~~~~~g~~~r 310 (374)
T PRK14293 245 GPPGDLYVYLFVKNDPEFRRDGINILSEIKISYL---------QAILGDTLEVDTVDGP-VELTIPAGTQPNTVLT 310 (374)
T ss_pred CCCcCEEEEEEEeCCCccChhhhceEEEeccCHH---------HHhCCCEEEecCCCCC-EEEEeCCCCCCCCEEE
Confidence 56899999998 99999999999999999 9999999999999997 8999999999999875
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=8.5e-31 Score=236.36 Aligned_cols=165 Identities=22% Similarity=0.351 Sum_probs=139.4
Q ss_pred hhhHHhhhcCCCC-C--CCCCCCCCCCCeE-------------------Eee-eeecCCCCc------------CCCCce
Q 039840 23 LVLVFDSFFGGGP-T--EEDERIAKGDDVW-------------------REK-NVIKPAPGK------------RSCNCR 67 (198)
Q Consensus 23 f~diF~~fFGgg~-~--~~~~~~~kg~Di~-------------------~~~-~~c~~c~G~------------~~C~G~ 67 (198)
++|+|++|||+++ + +..+++++|+|++ +++ ..|..|.|+ +.|+|+
T Consensus 87 ~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~ 166 (371)
T PRK14292 87 PMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGA 166 (371)
T ss_pred hHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCc
Confidence 5699999998642 1 1123456788853 232 249999886 469999
Q ss_pred eEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcce
Q 039840 68 NEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDL 134 (198)
Q Consensus 68 G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDL 134 (198)
|.+..+ ++.+|++|+.+ .++|+.|.|++++.+.++++|.||+|+.+|++|+|+|+|++.+++. |||
T Consensus 167 G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~-GDL 245 (371)
T PRK14292 167 GAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGN-GDL 245 (371)
T ss_pred cEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCC-CCE
Confidence 987654 67778887654 6889999999999999999999999999999999999999987665 999
Q ss_pred EEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 135 KASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 135 iv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+|+|+ |+|+|+||+++++|+|. +|++|++++|+||||+ +.|++|+++++|++++
T Consensus 246 ~v~i~v~~h~~f~r~g~dL~~~~~isl~---------eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~ 305 (371)
T PRK14292 246 YVHIEMEPHPELRREQEHLIYEARIGFA---------KAALGGQITVPTLDGP-QVIEVKPGTQHGDLHR 305 (371)
T ss_pred EEEEEEecCCccccchhceeEEeccCHH---------HHhCCCeEEEECCCCC-EEEecCCCcCCCcEEE
Confidence 99998 99999999999999999 9999999999999998 5899999999999874
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=9.1e-30 Score=230.33 Aligned_cols=164 Identities=27% Similarity=0.443 Sum_probs=138.8
Q ss_pred chhhHHhhh-cCCCCCCCCCCCCCCCCeEE-------------------eee-eecCCCCc-----------CCCCceeE
Q 039840 22 LLVLVFDSF-FGGGPTEEDERIAKGDDVWR-------------------EKN-VIKPAPGK-----------RSCNCRNE 69 (198)
Q Consensus 22 ~f~diF~~f-FGgg~~~~~~~~~kg~Di~~-------------------~~~-~c~~c~G~-----------~~C~G~G~ 69 (198)
+|.|+|++| ||+++ ..+++||+|+.+ ++. .|..|.|+ +.|+|+|.
T Consensus 98 ~~~~~f~~~~fgg~~---~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 174 (378)
T PRK14283 98 GIGNIFDMFGFGGGS---RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQ 174 (378)
T ss_pred chhhhccccccCCCC---CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccE
Confidence 356778777 76432 223467888542 222 48899885 67999998
Q ss_pred EEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceE
Q 039840 70 VYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLK 135 (198)
Q Consensus 70 ~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLi 135 (198)
+.+. ++++|++++.+ .++|+.|+|++++.+.+.++|.||||+++|++++|+|+|++.+. ..+|||+
T Consensus 175 ~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLi 254 (378)
T PRK14283 175 VKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLY 254 (378)
T ss_pred EEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEE
Confidence 7654 78888886554 67899999999999999999999999999999999999999765 5799999
Q ss_pred EEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 136 ASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 136 v~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
|+|+ |+|+|+||+++++|||. +|++|++++|+|||| .+.|++|++++||+++|
T Consensus 255 v~i~v~~~~~f~r~G~DL~~~~~Isl~---------eAl~G~~~~i~tldG-~i~v~ip~g~~~g~~~r 313 (378)
T PRK14283 255 VVIKVKPHKIFRREGANLYYEKPISFV---------QAALGDTVDVPTIDG-PVELKIPAGTQSGTTFR 313 (378)
T ss_pred EEEEEEcCCCEEEecCCEEEEEecCHH---------HHhcCCeEEEEcCCc-eEEEEeCCCCCCCCEEE
Confidence 9998 99999999999999999 999999999999999 59999999999999875
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=8.3e-30 Score=231.08 Aligned_cols=135 Identities=21% Similarity=0.353 Sum_probs=123.0
Q ss_pred eecCCCCc-----------CCCCceeEEEEE-EeCCeeEEEEe------------cccccccCCeeEeeecEEEEEEecC
Q 039840 54 VIKPAPGK-----------RSCNCRNEVYHK-QIGPGMFQQMT------------EQVCEQCQNVKYEREGYFVTVDIEK 109 (198)
Q Consensus 54 ~c~~c~G~-----------~~C~G~G~~~~~-~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~l~V~IP~ 109 (198)
.|..|.|+ +.|+|+|.++.. ++++|++++.+ .++|+.|+|++++.+.+.++|+||+
T Consensus 156 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 235 (386)
T PRK14289 156 PCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPA 235 (386)
T ss_pred ccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCC
Confidence 49999886 679999987665 78888886543 6789999999999999999999999
Q ss_pred CCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcE
Q 039840 110 GMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHL 182 (198)
Q Consensus 110 G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~ 182 (198)
|+++|++|+++|+|++.+. ..+|||+|+|+ |+|+++||++++.|+|. +|++|++++|+||||+
T Consensus 236 G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~---------eAl~G~~~~i~~ldg~- 305 (386)
T PRK14289 236 GVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVP---------TAALGGAVEVPTIDGK- 305 (386)
T ss_pred CCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHH---------HHhCCCeEEeecCCce-
Confidence 9999999999999998764 57899999998 99999999999999999 9999999999999997
Q ss_pred EEEeeCCCCCCCeEEC
Q 039840 183 VDISTKGITKPKEVRK 198 (198)
Q Consensus 183 ~~i~~~~~t~pg~v~r 198 (198)
+.|+||+++++|+++|
T Consensus 306 i~v~ip~g~~~g~~~r 321 (386)
T PRK14289 306 AKVKIEAGTQPGKVLR 321 (386)
T ss_pred EEEEECCccCCCcEEE
Confidence 9999999999999875
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.1e-27 Score=207.77 Aligned_cols=162 Identities=30% Similarity=0.590 Sum_probs=137.5
Q ss_pred HhhhcCCCCCCCCCCCCCCCCeE-------------------Eeee-eecCCCCc----------CCCCceeE-EEEEEe
Q 039840 27 FDSFFGGGPTEEDERIAKGDDVW-------------------REKN-VIKPAPGK----------RSCNCRNE-VYHKQI 75 (198)
Q Consensus 27 F~~fFGgg~~~~~~~~~kg~Di~-------------------~~~~-~c~~c~G~----------~~C~G~G~-~~~~~~ 75 (198)
|++||+.|+. +.+++.||.|+. ++++ +|..|+|+ +.|.|+|. +..+++
T Consensus 83 f~~~F~~g~~-~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~ 161 (337)
T KOG0712|consen 83 FSQFFGFGGN-GGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQM 161 (337)
T ss_pred HHHhccCCCc-CccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEec
Confidence 6666664432 233445599953 2333 58999886 57999995 456699
Q ss_pred CCeeEEEEe---------------cccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE-
Q 039840 76 GPGMFQQMT---------------EQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG- 139 (198)
Q Consensus 76 ~~g~~~~~~---------------~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~- 139 (198)
+|||.|+++ ++.|+.|.|.+++++.+.++|+|++|+.++++|.+.+++++.++..+||+++.+.
T Consensus 162 gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~ 241 (337)
T KOG0712|consen 162 GPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQ 241 (337)
T ss_pred cccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecc
Confidence 999999887 6799999999999999999999999999999999999999998878999999998
Q ss_pred -----eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCC--CCCCCeEEC
Q 039840 140 -----LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKG--ITKPKEVRK 198 (198)
Q Consensus 140 -----F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~--~t~pg~v~r 198 (198)
|.|+++||+++.+|+|. +|++|+.+.+.||||+.+.|++++ +++||++++
T Consensus 242 k~h~~F~Rrg~dL~~~~~i~l~---------eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~ 298 (337)
T KOG0712|consen 242 KEHPGFDRRGSDLYRKLTISLV---------EALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR 298 (337)
T ss_pred cccccceecccccceeeecchh---------hccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence 99999999999999999 999999999999999999998874 777777653
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.88 E-value=5.9e-22 Score=174.86 Aligned_cols=149 Identities=18% Similarity=0.212 Sum_probs=112.3
Q ss_pred CchhhHHhhhcCCCCC-CCCCCCCCCCCeEEeeee--ecCCCCcCCCCceeEEEEEEeCCeeEEEEecccccccCCeeEe
Q 039840 21 DLLVLVFDSFFGGGPT-EEDERIAKGDDVWREKNV--IKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYE 97 (198)
Q Consensus 21 ~~f~diF~~fFGgg~~-~~~~~~~kg~Di~~~~~~--c~~c~G~~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~ 97 (198)
.+|.|+|+.|||++++ ..+.+++||.|+.++..+ -..+.|. .+....+ . ..|.|.|.+
T Consensus 92 ~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~------~k~i~~~----------~---~~~~g~G~~ 152 (306)
T PRK10266 92 EDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEH------KRTISYN----------L---PVYNAFGMI 152 (306)
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCc------eEEEEEe----------c---ccccCCCeE
Confidence 4589999999985321 112334578998877644 2344441 1111110 0 112222221
Q ss_pred --eecEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEEEEEeceeccccccceeee
Q 039840 98 --REGYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWDVQAV 168 (198)
Q Consensus 98 --~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~~~Al 168 (198)
...+.++|+||+|+++|++|+++|+|++.++ ..+|||+|+|+ |+|+|+||+++++|||. +|+
T Consensus 153 ~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~---------~al 223 (306)
T PRK10266 153 EQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPW---------EAA 223 (306)
T ss_pred EEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHH---------HHh
Confidence 2236799999999999999999999999775 47899999998 99999999999999999 999
Q ss_pred eecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 169 VGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 169 ~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+|++++|+|+||+ +.|++|+++++|+++|
T Consensus 224 ~G~~~~i~~~~g~-v~v~ip~g~~~g~~~r 252 (306)
T PRK10266 224 LGAKVTVPTLKES-ILLTIPPGSQAGQRLR 252 (306)
T ss_pred CCCEEEeeCCCcc-EEEEeCCCcCCCCEEE
Confidence 9999999999997 9999999999999875
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=8.3e-22 Score=172.94 Aligned_cols=132 Identities=28% Similarity=0.350 Sum_probs=104.6
Q ss_pred CchhhHHhhhcCCCC--CCC-------CCCCCCCCCeEEeeee--ecCCCCcCCCCceeEEEEEEeCCeeEEEEeccccc
Q 039840 21 DLLVLVFDSFFGGGP--TEE-------DERIAKGDDVWREKNV--IKPAPGKRSCNCRNEVYHKQIGPGMFQQMTEQVCE 89 (198)
Q Consensus 21 ~~f~diF~~fFGgg~--~~~-------~~~~~kg~Di~~~~~~--c~~c~G~~~C~G~G~~~~~~~~~g~~~~~~~~~C~ 89 (198)
++|+|+|++|||+++ ++. ...+++|+|+.++..+ -..+.|. .. .+
T Consensus 96 ~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~-------~~---~i-------------- 151 (291)
T PRK14299 96 GDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGG-------EK---VV-------------- 151 (291)
T ss_pred CCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCC-------eE---EE--------------
Confidence 468899999998521 110 1234678898777643 3344442 00 00
Q ss_pred ccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEeceecccccc
Q 039840 90 QCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLW 163 (198)
Q Consensus 90 ~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~ 163 (198)
.-..+.++|+||||+++|++|+++|+|++. |||+|+|+ |+|+|+||+++++|||.
T Consensus 152 -------~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~------- 212 (291)
T PRK14299 152 -------EVAGERLSVRIPPGVREGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAP------- 212 (291)
T ss_pred -------eeCCEEEEEecCCCcCCCcEEEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHH-------
Confidence 012367899999999999999999999873 99999998 99999999999999999
Q ss_pred ceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 164 DVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 164 ~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+|++|++++|+||||+ +.|++|++++||+++|
T Consensus 213 --eAl~G~~~~v~tldG~-~~v~ip~~~~~g~~~r 244 (291)
T PRK14299 213 --IAVVGGKVRVMTLDGP-VEVTIPPRTQAGRKLR 244 (291)
T ss_pred --HHhCCCEEEEECCCCC-EEEEeCCCcCCCCEEE
Confidence 9999999999999997 9999999999999875
No 33
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.81 E-value=1.3e-19 Score=173.95 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=90.1
Q ss_pred cCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEeceeccccccc
Q 039840 91 CQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLVKLSCGLWD 164 (198)
Q Consensus 91 C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~~~~~~~~~ 164 (198)
+.|...+++.+.++|+||+|+++|++|+|+|+|++++++. |||+|+|+ |+|+|+||+++++|+|.
T Consensus 687 g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~-------- 757 (871)
T TIGR03835 687 GNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPL-------- 757 (871)
T ss_pred CCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHH--------
Confidence 4555677888999999999999999999999999876654 99999998 99999999999999999
Q ss_pred eeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 165 VQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 165 ~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+||+|+++.|+||||+ +.|++|++|+||+++|
T Consensus 758 -EALLGgtIeIpTLDGr-VkLkIPpgTqpGqvLR 789 (871)
T TIGR03835 758 -VAYNGGIIDVFGPNKL-FNVRIPGGIKVNDQVI 789 (871)
T ss_pred -HHhcCCEEEeeCCCCC-EEEeeCCCCCCCcEEE
Confidence 9999999999999998 9999999999999985
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.8e-15 Score=134.19 Aligned_cols=164 Identities=47% Similarity=0.783 Sum_probs=138.5
Q ss_pred hHHhhhcCC-----CCCCCCCCCCCCCCeEEee-------------------eeecCCCCcCCCCceeEEEEEEeCCeeE
Q 039840 25 LVFDSFFGG-----GPTEEDERIAKGDDVWREK-------------------NVIKPAPGKRSCNCRNEVYHKQIGPGMF 80 (198)
Q Consensus 25 diF~~fFGg-----g~~~~~~~~~kg~Di~~~~-------------------~~c~~c~G~~~C~G~G~~~~~~~~~g~~ 80 (198)
|+|+.||+- ++....+...+|.|+.... .+-..|+|+..|+++-....++.++|++
T Consensus 101 ~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~ 180 (336)
T KOG0713|consen 101 DIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRF 180 (336)
T ss_pred chHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChh
Confidence 566666541 1222234467888865433 2334567778999998888889999999
Q ss_pred EEEecccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEe
Q 039840 81 QQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTIT 154 (198)
Q Consensus 81 ~~~~~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~ 154 (198)
|+.|+..|..|.+.++..+.+..++.+..++..+....+..+|.+.....+||+++.+. |.|+++++++++.++
T Consensus 181 ~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~s 260 (336)
T KOG0713|consen 181 QMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTIS 260 (336)
T ss_pred hhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHH
Confidence 99999999999999999999999999999999999999999998877789999999998 899999999999999
Q ss_pred ceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEE
Q 039840 155 LVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVR 197 (198)
Q Consensus 155 l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~ 197 (198)
+. +|++|++.++.|+|++.+.++...++-|+..+
T Consensus 261 l~---------~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~ 294 (336)
T KOG0713|consen 261 LE---------AALVGFEMEILHLDGHYVEVSRKKITWPGART 294 (336)
T ss_pred HH---------HHHHHHHHHhhccchhhhhhhhhhccccchhh
Confidence 99 99999999999999998888888888887654
No 35
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.90 E-value=1.3e-09 Score=78.50 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=37.5
Q ss_pred ceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 146 NLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 146 DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
||+++++|||. ||++|++++|+||||+.+.|++|+++++|+++|
T Consensus 1 DL~~~~~I~l~---------~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~ 44 (81)
T PF01556_consen 1 DLYCTIPISLK---------EALLGGTISIPTLDGKTIKIKIPPGTQPGQQLR 44 (81)
T ss_dssp EEEEEEEEEHH---------HHHH-EEEEEE-TTS-EEEEEETST-STT-EEE
T ss_pred CeEEEEEeCHH---------HHhCCCEEEEECCCCCEEEEeccCccCCCcEEe
Confidence 79999999999 999999999999999889999999999999875
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.7e-08 Score=86.22 Aligned_cols=95 Identities=17% Similarity=0.320 Sum_probs=78.2
Q ss_pred eecCCCCc-----------CCCCceeEEEEE-EeCCeeEEEEe---------cccccccCCeeEeeecEEEEEEecCCCC
Q 039840 54 VIKPAPGK-----------RSCNCRNEVYHK-QIGPGMFQQMT---------EQVCEQCQNVKYEREGYFVTVDIEKGMQ 112 (198)
Q Consensus 54 ~c~~c~G~-----------~~C~G~G~~~~~-~~~~g~~~~~~---------~~~C~~C~G~g~~~~~~~l~V~IP~G~~ 112 (198)
.|..|.|. ..|+|+|.+... +.++.+. +.. .+.|..|.|.+.+...+.+.+.+|+|..
T Consensus 166 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~ 244 (288)
T KOG0715|consen 166 DCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVR 244 (288)
T ss_pred ccccccCcCcccccccccchhhhCcccccccccCCccee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccc
Confidence 58899876 679999976554 3333333 111 5669999999999999999999999999
Q ss_pred CCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEEEEEece
Q 039840 113 DGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHATVTITLV 156 (198)
Q Consensus 113 ~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~~~I~l~ 156 (198)
++.+|++.+.+.. ||++.+. |+|+|.|++++..|++.
T Consensus 245 ~~~~l~~~~~~~~-------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~ 287 (288)
T KOG0715|consen 245 SADTLRFAGHGND-------DLFVRLIVAKSPSFRREGKDILYDAIISFT 287 (288)
T ss_pred cccEEEEecCCcc-------eEEEEEEeccCcccccccCccccccccccc
Confidence 9999999998754 8888887 99999999999999886
No 37
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.27 E-value=1e-06 Score=79.93 Aligned_cols=51 Identities=27% Similarity=0.323 Sum_probs=42.6
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHAT 150 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~ 150 (198)
.+.++|+||+|+++|++++++|+|.+.++ ..+|||+|+|+ |++++.+|+.+
T Consensus 302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999999998654 46899999998 77777766543
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.03 E-value=6.6e-06 Score=74.62 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=42.0
Q ss_pred EEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE------eeecCCceEEE
Q 039840 101 YFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG------LLREGNNLHAT 150 (198)
Q Consensus 101 ~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~------F~R~G~DL~~~ 150 (198)
..++|+||+|+++|++++++|+|.+.++. .+|||+|+|+ |++++.+|+.+
T Consensus 296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~ 352 (365)
T PRK14290 296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIRE 352 (365)
T ss_pred ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999999999987664 6899999998 66666666554
No 39
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=2.3e-05 Score=71.29 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=35.8
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.+.++|+||+|+++|++++++|+|.+.++ ..+|||+|+|+
T Consensus 291 g~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~ 331 (372)
T PRK14300 291 GGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIH 331 (372)
T ss_pred CCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 35799999999999999999999998765 46899999998
No 40
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.94 E-value=1.4e-05 Score=72.50 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=39.4
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE------eeecCCceEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG------LLREGNNLHA 149 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~------F~R~G~DL~~ 149 (198)
.++|+||+|+++|++++++|+|.+.++. .+|||+|+|+ |+++..+|+.
T Consensus 291 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 345 (366)
T PRK14294 291 ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLT 345 (366)
T ss_pred cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3699999999999999999999987653 6899999998 5555555543
No 41
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.93 E-value=3e-05 Score=70.81 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=35.5
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~ 139 (198)
.+.++|+||+|+++|++++++|+|.+.++. .+|||+|+|+
T Consensus 301 G~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~ 341 (382)
T PRK14291 301 GKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVH 341 (382)
T ss_pred CCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 457899999999999999999999987653 6899999988
No 42
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.93 E-value=3.4e-05 Score=70.66 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=35.4
Q ss_pred EEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 101 YFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 101 ~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
..++|+||+|+++|++++|+|+|.+.++ ..+|||||+|+
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~ 345 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRIS 345 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEE
Confidence 6789999999999999999999998765 46899999998
No 43
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.93 E-value=3.6e-05 Score=70.54 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=34.3
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~ 139 (198)
.++|+||+|+++|++++++|+|.+.....+|||||+|+
T Consensus 320 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~ 357 (392)
T PRK14279 320 PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVK 357 (392)
T ss_pred eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
Confidence 47999999999999999999999865556899999998
No 44
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.92 E-value=1.2e-05 Score=73.00 Aligned_cols=40 Identities=20% Similarity=0.444 Sum_probs=35.6
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~ 139 (198)
.+.++|+||+|+++|++++++|+|.+.++. ..|||+|+|+
T Consensus 292 G~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~ 332 (365)
T PRK14285 292 SKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIK 332 (365)
T ss_pred CCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEE
Confidence 357899999999999999999999987664 4799999998
No 45
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.92 E-value=1e-05 Score=73.46 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=41.0
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHAT 150 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~ 150 (198)
.++|+||+|+++|++++++|+|.+.++ ..+|||||.|+ |++++.+|+.+
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~ 344 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEE 344 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999998665 46899999998 66666666554
No 46
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.4e-05 Score=69.58 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=34.1
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG 139 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~ 139 (198)
++|+||||+++|++++|+|+|.+...+ ..|||||.+.
T Consensus 292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~ 329 (371)
T COG0484 292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVK 329 (371)
T ss_pred EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEE
Confidence 899999999999999999999997664 6799999998
No 47
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.89 E-value=3.5e-05 Score=70.55 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=35.7
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~ 139 (198)
.+.++|+||+|+++|++++++|+|.+..++.+|||||+|+
T Consensus 312 G~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~ 351 (389)
T PRK14295 312 GPPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVE 351 (389)
T ss_pred CCEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEE
Confidence 4579999999999999999999999865556899999988
No 48
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.89 E-value=1.2e-05 Score=73.22 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=39.8
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE------eeecCCceEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG------LLREGNNLHAT 150 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~------F~R~G~DL~~~ 150 (198)
++|+||+|+++|++++++|+|.+.++ ..+|||||.|+ +++++.+|+.+
T Consensus 293 i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~ 347 (377)
T PRK14298 293 VKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLRE 347 (377)
T ss_pred EEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999999998665 35899999998 56666655544
No 49
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.86 E-value=6.7e-05 Score=68.44 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=35.6
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
...++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~ 329 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVE 329 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 46789999999999999999999998655 46899999998
No 50
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.82 E-value=6.9e-05 Score=68.39 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=34.1
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~ 335 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVN 335 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEE
Confidence 379999999999999999999998765 36799999998
No 51
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.82 E-value=5.9e-05 Score=68.70 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=33.9
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG 139 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~ 139 (198)
++|+||+|+++|++++|+|+|.+.++. .+|||||+|+
T Consensus 292 i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~ 329 (373)
T PRK14301 292 VTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVS 329 (373)
T ss_pred EEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence 899999999999999999999987653 5899999998
No 52
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.79 E-value=8.1e-05 Score=67.88 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.++|+||+|+++|++++++|+|.+..+ ..+|||||.|+
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~ 337 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVI 337 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEE
Confidence 479999999999999999999998655 36899999998
No 53
>PRK14299 chaperone protein DnaJ; Provisional
Probab=97.75 E-value=2.2e-05 Score=69.11 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=49.3
Q ss_pred cceEEEEE-eeecCCceEEEEEEeceeccccccceeeeeecEEEEeCCCCcEEEEeeCCCCCCCeEEC
Q 039840 132 GDLKASFG-LLREGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLDGHLVDISTKGITKPKEVRK 198 (198)
Q Consensus 132 GDLiv~i~-F~R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ldG~~~~i~~~~~t~pg~v~r 198 (198)
+|++..+. +.|+|+||++++.|||. ||++|++++| +++|+.++|+||+++++|+++|
T Consensus 116 g~~~~~~~~~~~~g~dl~~~l~isL~---------ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir 173 (291)
T PRK14299 116 GDLFGSVGRRARKGRDLEAELPLTLE---------EAYRGGEKVV-EVAGERLSVRIPPGVREGQVIR 173 (291)
T ss_pred ccccccccCCCCCCCCEEEEEEecHH---------HHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEE
Confidence 56654333 56789999999999999 9999999998 7899889999999999999875
No 54
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.73 E-value=9.7e-05 Score=67.27 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=35.3
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.+.++|+||+|+++|++++++|+|.+.++ ..+|||||.|+
T Consensus 296 G~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~ 336 (372)
T PRK14286 296 GKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVK 336 (372)
T ss_pred CCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEE
Confidence 45689999999999999999999998665 35799999998
No 55
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.73 E-value=0.00013 Score=66.56 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=33.8
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.++|+||+|+++|++++++|+|.+..+ ..+|||+|+|+
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~ 332 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVR 332 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence 379999999999999999999998654 36899999998
No 56
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.68 E-value=3.9e-05 Score=53.32 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=21.9
Q ss_pred CCCCceeEEEEE-EeCCeeEEEEecccccccCCeeEee
Q 039840 62 RSCNCRNEVYHK-QIGPGMFQQMTEQVCEQCQNVKYER 98 (198)
Q Consensus 62 ~~C~G~G~~~~~-~~~~g~~~~~~~~~C~~C~G~g~~~ 98 (198)
+.|+|+|++... +.+++++|+ ...|+.|+|.|.+.
T Consensus 19 ~~C~G~G~~~~~~~~~~~~~~~--~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 19 PQCNGSGQVTRRQQTPGGVFQM--QQTCPKCGGTGKII 54 (66)
T ss_dssp TTSSSSSEEEEEEESSSTTEEE--EEE-TTTSSSSEE-
T ss_pred cCCCCeeEEEEEEeCCCeEEEE--EEECCCCcceeeEE
Confidence 679999988765 434433333 34588888877763
No 57
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.67 E-value=0.00013 Score=66.29 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=35.3
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~ 139 (198)
.+.++|+||+++++|++++++|+|.+.++. ..|||+|.|+
T Consensus 284 G~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~ 324 (369)
T PRK14288 284 GDELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQ 324 (369)
T ss_pred CCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence 346899999999999999999999987664 4699999998
No 58
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=97.65 E-value=6.7e-05 Score=53.89 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=33.1
Q ss_pred cEEEEEEecCCCCCCcEEEEcccCCCCCC-C-CCcceEEEEE
Q 039840 100 GYFVTVDIEKGMQDGQEVVFCEDGEPIID-G-EPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~-~~GDLiv~i~ 139 (198)
.+.++|+||+|+++|++++++|+|.+... . ..|||+|.++
T Consensus 26 g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~ 67 (81)
T PF01556_consen 26 GKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFE 67 (81)
T ss_dssp S-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEE
T ss_pred CCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEE
Confidence 47899999999999999999999997655 3 6999999998
No 59
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.64 E-value=0.00018 Score=64.91 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=34.5
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCCC-CCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIIDG-EPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~~-~~GDLiv~i~ 139 (198)
.++|.||+|+++|++++++|+|.+.+++ .+|||||.|+
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~ 332 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVK 332 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEE
Confidence 5899999999999999999999987664 6899999998
No 60
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.64 E-value=0.00014 Score=66.71 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=34.0
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus 313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~ 351 (397)
T PRK14281 313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVN 351 (397)
T ss_pred cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence 479999999999999999999998655 36899999998
No 61
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.64 E-value=0.00018 Score=65.53 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=34.0
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.++|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus 289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~ 327 (371)
T PRK14287 289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVR 327 (371)
T ss_pred CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEE
Confidence 379999999999999999999998665 35899999998
No 62
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.60 E-value=0.00018 Score=65.66 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=34.7
Q ss_pred EEEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 101 YFVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 101 ~~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
..++|.||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus 304 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~ 343 (386)
T PRK14289 304 GKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVS 343 (386)
T ss_pred ceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEE
Confidence 3489999999999999999999998765 46899999998
No 63
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.53 E-value=9.5e-05 Score=61.62 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=41.0
Q ss_pred CCCCceeEEEEEEeCCeeEEEEecccccccCCeeEeeecEEEEEEecCCCCCCcEEEEcc
Q 039840 62 RSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTVDIEKGMQDGQEVVFCE 121 (198)
Q Consensus 62 ~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~l~V~IP~G~~~G~~I~l~G 121 (198)
+.|+|+|+++.. .++|+.|+|.|+++.++...+++ .|+.+|++|++.-
T Consensus 103 ~~C~G~G~~i~~-----------~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~~ 150 (186)
T TIGR02642 103 PRCRGTGLIQRR-----------QRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLKD 150 (186)
T ss_pred CCCCCeeEEecC-----------CCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHHH
Confidence 568888886642 25799999999999999999999 9999999999764
No 64
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.53 E-value=0.00033 Score=63.89 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=34.1
Q ss_pred EEEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 102 FVTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 102 ~l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.++|.||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus 297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~ 335 (378)
T PRK14283 297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVK 335 (378)
T ss_pred eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 589999999999999999999998654 46899999998
No 65
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.49 E-value=0.00039 Score=63.62 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=33.2
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
++|.||+|+++|++++++|+|.+.++ ...|||||+|+
T Consensus 307 ~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~ 344 (386)
T PRK14277 307 VKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVY 344 (386)
T ss_pred EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 79999999999999999999998655 35799999998
No 66
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.46 E-value=0.00034 Score=63.55 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=33.2
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCCC-CCCcceEEEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPIID-GEPGDLKASFG 139 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~~-~~~GDLiv~i~ 139 (198)
.+|+||+|+++|++++++|+|.+.++ ..+|||||+|+
T Consensus 290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~ 327 (371)
T PRK14292 290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYE 327 (371)
T ss_pred EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 47999999999999999999998765 46899999998
No 67
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.42 E-value=0.00017 Score=65.57 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=39.1
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCCCC--CCcceEEEEE------eeecCCceEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPIIDG--EPGDLKASFG------LLREGNNLHAT 150 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~~~--~~GDLiv~i~------F~R~G~DL~~~ 150 (198)
++|+||+++++|++++++|+|.+.++. ..|||||.|+ +++++.+|+.+
T Consensus 295 ~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~ 350 (374)
T PRK14293 295 VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEK 350 (374)
T ss_pred EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999999986653 4799999998 55566555443
No 68
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.28 E-value=0.0011 Score=61.62 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=34.7
Q ss_pred cEEEEEEecCC--CCCCcEEEEcccCCCCCC--CCCcceEEEEE
Q 039840 100 GYFVTVDIEKG--MQDGQEVVFCEDGEPIID--GEPGDLKASFG 139 (198)
Q Consensus 100 ~~~l~V~IP~G--~~~G~~I~l~G~G~~~~~--~~~GDLiv~i~ 139 (198)
.+.++|+||+| +++|++++|+|+|.+..+ ...|||||.|+
T Consensus 300 G~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~ 343 (421)
T PTZ00037 300 GRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFE 343 (421)
T ss_pred CCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEE
Confidence 45689999999 999999999999998654 25799999998
No 69
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0021 Score=54.23 Aligned_cols=91 Identities=24% Similarity=0.473 Sum_probs=77.1
Q ss_pred eeecEEEEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCceEEE--EEEeceeccccccceeee
Q 039840 97 EREGYFVTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNLHAT--VTITLVKLSCGLWDVQAV 168 (198)
Q Consensus 97 ~~~~~~l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL~~~--~~I~l~~~~~~~~~~~Al 168 (198)
........+.+++++..|+.+..+.+|+..++..+-++++.+. |.+.+++|... ..|++. +|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~---------~~~ 266 (306)
T KOG0714|consen 196 SSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLK---------EAL 266 (306)
T ss_pred cCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehh---------hhh
Confidence 4567788999999999999999999999877655666766666 88899999999 999999 999
Q ss_pred eecEEEEeCCCCcEEEEeeC-CCCCCCeE
Q 039840 169 VGFEKTIKHLDGHLVDISTK-GITKPKEV 196 (198)
Q Consensus 169 ~G~~~~i~~ldG~~~~i~~~-~~t~pg~v 196 (198)
+|....++++++..+.+.+. ...+|+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (306)
T KOG0714|consen 267 LGVTVFVPTLDGRSYSLSINKDLIEPGEE 295 (306)
T ss_pred cCcceeeecccCccccCcccccccCCCce
Confidence 99999999999987777766 66666654
No 70
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.72 E-value=0.0033 Score=48.41 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=27.2
Q ss_pred eeecCCCCc-----CCCCceeEEEEEEeCCeeEEEEe---------cccccccCCeeEee
Q 039840 53 NVIKPAPGK-----RSCNCRNEVYHKQIGPGMFQQMT---------EQVCEQCQNVKYER 98 (198)
Q Consensus 53 ~~c~~c~G~-----~~C~G~G~~~~~~~~~g~~~~~~---------~~~C~~C~G~g~~~ 98 (198)
..|..|+|+ +.|+|+|.+..++ ++ ++++.+ +..|+.|+|++++.
T Consensus 42 v~C~~C~GsG~~~C~~C~G~G~v~~~~-~g-~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~ 99 (111)
T PLN03165 42 QPCFPCSGTGAQVCRFCVGSGNVTVEL-GG-GEKEVSKCINCDGAGSLTCTTCQGSGIQP 99 (111)
T ss_pred CCCCCCCCCCCcCCCCCcCcCeEEEEe-CC-cEEEEEECCCCCCcceeeCCCCCCCEEEe
Confidence 359999988 7799999877544 33 222211 34466666655553
No 71
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=96.22 E-value=0.0055 Score=54.32 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=39.7
Q ss_pred ecCCceEEEEEEeceeccccccceeeeeecEEEE----eCCC--C-------cEEEEeeCCCCCCCeEEC
Q 039840 142 REGNNLHATVTITLVKLSCGLWDVQAVVGFEKTI----KHLD--G-------HLVDISTKGITKPKEVRK 198 (198)
Q Consensus 142 R~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i----~~ld--G-------~~~~i~~~~~t~pg~v~r 198 (198)
++|.||++++.|||. ||+.|+.++| ++++ | +.+.|++|+++++|+++|
T Consensus 115 ~kg~di~~~v~isLe---------e~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~ 175 (306)
T PRK10266 115 ARGHDIEIEVAVFLE---------ETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIR 175 (306)
T ss_pred CCCCceEEEEEEEHH---------HhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEE
Confidence 468899999999999 9999995544 5554 3 468999999999999875
No 72
>PRK14296 chaperone protein DnaJ; Provisional
Probab=95.82 E-value=0.016 Score=52.88 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=32.5
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCC-C-CCCcceEEEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPII-D-GEPGDLKASFG 139 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~-~-~~~GDLiv~i~ 139 (198)
++|+||+++++|++++|+|+|.+.. + ...|||||.|+
T Consensus 302 ~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~ 340 (372)
T PRK14296 302 IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVN 340 (372)
T ss_pred EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEE
Confidence 8999999999999999999999743 2 35799999998
No 73
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=95.22 E-value=0.033 Score=55.35 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=33.2
Q ss_pred EEEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840 103 VTVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG 139 (198)
Q Consensus 103 l~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~ 139 (198)
++|+||+|+++|++++++|+|.+..+..+|||||.|.
T Consensus 774 VkLkIPpgTqpGqvLRIkGKGMP~~~~~RGDLyV~f~ 810 (871)
T TIGR03835 774 FNVRIPGGIKVNDQVIFKDLGLTKTKYDKGSLIVHLY 810 (871)
T ss_pred EEEeeCCCCCCCcEEEECCCCCCCCCCCCCCEEEEEE
Confidence 7999999999999999999999743346899999998
No 74
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=88.49 E-value=0.42 Score=48.08 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=40.9
Q ss_pred eccCCCCcCCCCchhhHHhhhcCCCCCCCCCCCCCCCCeEEeee--eecCCCCcCCCCceeEEEEE-EeCCeeEEEEecc
Q 039840 10 YRSHPLAFSIVDLLVLVFDSFFGGGPTEEDERIAKGDDVWREKN--VIKPAPGKRSCNCRNEVYHK-QIGPGMFQQMTEQ 86 (198)
Q Consensus 10 ~~~~~~~f~~~~~f~diF~~fFGgg~~~~~~~~~kg~Di~~~~~--~c~~c~G~~~C~G~G~~~~~-~~~~g~~~~~~~~ 86 (198)
=||+|+-|-. -|++| .++|.+-+ ....+..+...++++.. .|++|.| .|.+.+. ..-|-.+ -
T Consensus 690 pRSNPATYtg--~Fd~I-R~lFA~tp-eAK~rGyk~grFSFNvkGGRCe~C~G------dG~ikIeM~FLpdVy-----v 754 (935)
T COG0178 690 PRSNPATYTG--VFDDI-RELFAGTP-EAKARGYKPGRFSFNVKGGRCEACQG------DGVIKIEMHFLPDVY-----V 754 (935)
T ss_pred CCCCccchhc--chHHH-HHHHhcCh-HHHHcCCCcccccccCCCcCCccccC------CceEEEEeccCCCce-----e
Confidence 4889887644 23333 33443211 00111223334555543 4877655 6766543 3333332 4
Q ss_pred cccccCCeeEeeecE
Q 039840 87 VCEQCQNVKYEREGY 101 (198)
Q Consensus 87 ~C~~C~G~g~~~~~~ 101 (198)
+|+.|+|+.+-++.-
T Consensus 755 ~CevC~GkRYn~EtL 769 (935)
T COG0178 755 PCEVCHGKRYNRETL 769 (935)
T ss_pred eCCCcCCcccccceE
Confidence 799999999987653
No 75
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=81.28 E-value=0.72 Score=44.83 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=11.9
Q ss_pred eecCCCCc----------CCCCceeEE
Q 039840 54 VIKPAPGK----------RSCNCRNEV 70 (198)
Q Consensus 54 ~c~~c~G~----------~~C~G~G~~ 70 (198)
.|+.|+|+ +.|+|+|.+
T Consensus 4 ~C~~C~g~G~i~v~~e~c~vc~gtG~~ 30 (715)
T COG1107 4 KCPECGGKGKIVVGEEECPVCHGTGFS 30 (715)
T ss_pred cccccCCCceEeeeeeecccccccccc
Confidence 47777765 567788765
No 76
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=5.8 Score=36.10 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=39.5
Q ss_pred ccCCeeEe--eecEEEEEEecCC--CCCCcEEEEcccCCCCCCCCCcceEEEEE
Q 039840 90 QCQNVKYE--REGYFVTVDIEKG--MQDGQEVVFCEDGEPIIDGEPGDLKASFG 139 (198)
Q Consensus 90 ~C~G~g~~--~~~~~l~V~IP~G--~~~G~~I~l~G~G~~~~~~~~GDLiv~i~ 139 (198)
.|.+.... ...+.+++.++|| +.+|++.+++|+|.+..+...|||||.+.
T Consensus 266 l~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~ 319 (337)
T KOG0712|consen 266 LCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFE 319 (337)
T ss_pred cccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEE
Confidence 34444433 3567889999998 78999999999999977656999999887
No 77
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=2.5 Score=38.44 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=18.0
Q ss_pred cccccccCCeeEeeecEEEEEEe
Q 039840 85 EQVCEQCQNVKYEREGYFVTVDI 107 (198)
Q Consensus 85 ~~~C~~C~G~g~~~~~~~l~V~I 107 (198)
..+|.+|.|.|.......+.|.-
T Consensus 256 ~k~C~TC~gtgsll~~t~~vV~w 278 (406)
T KOG2813|consen 256 KKPCTTCSGTGSLLNYTRIVVYW 278 (406)
T ss_pred CcccccccCccceeeeEEEEEEe
Confidence 56899999999887777776654
No 78
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=58.45 E-value=5.8 Score=38.81 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=34.6
Q ss_pred CCCCeEEeee-eecCCCCc---------CCCCceeEEEEEEeCCeeEEEEecccccccCCeeE
Q 039840 44 KGDDVWREKN-VIKPAPGK---------RSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKY 96 (198)
Q Consensus 44 kg~Di~~~~~-~c~~c~G~---------~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~ 96 (198)
.+-|...+.. +|..|+|+ +.|+|+|++..-.+.--++.+..+-.|+.|+-+..
T Consensus 44 ~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 44 ETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred ccccccccCCCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 3456665543 69999987 78999999887543322333333447999985443
No 79
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=50.44 E-value=11 Score=31.45 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=15.9
Q ss_pred eeecCCCCc----------CCCCceeEEEE
Q 039840 53 NVIKPAPGK----------RSCNCRNEVYH 72 (198)
Q Consensus 53 ~~c~~c~G~----------~~C~G~G~~~~ 72 (198)
..|+.|.|+ +.|+|+|++..
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 469999987 57999997654
No 80
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=49.16 E-value=4.4 Score=44.29 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCceeEEEEE-EeCCeeEEEEecccccccCCeeEeeecEEEE
Q 039840 64 CNCRNEVYHK-QIGPGMFQQMTEQVCEQCQNVKYEREGYFVT 104 (198)
Q Consensus 64 C~G~G~~~~~-~~~~g~~~~~~~~~C~~C~G~g~~~~~~~l~ 104 (198)
|.|.|.+... +.-| -...+|+.|+|+.+.++.-.++
T Consensus 1613 C~G~G~i~i~m~fl~-----dv~~~C~~C~G~R~~~e~L~v~ 1649 (1809)
T PRK00635 1613 CWGLGYQWIDRAFYA-----LEKRPCPTCSGFRIQPLAQEVV 1649 (1809)
T ss_pred CccCceEEEecccCC-----CcccCCCCCCCcCCCHHHHhhe
Confidence 5557876543 2111 1246899999999987764333
No 81
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.74 E-value=11 Score=38.74 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=24.9
Q ss_pred CCCCceeEEEEEEeCCeeEEEEecccccccCCeeEeeecEEEEE
Q 039840 62 RSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFVTV 105 (198)
Q Consensus 62 ~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~~~~~l~V 105 (198)
+.|.|.|.+... +++ + .-...+|+.|+|+.+..+.-.+++
T Consensus 740 ~~C~G~G~~~~~-~~f--~-~~~~~~C~~C~G~R~~~e~l~v~~ 779 (924)
T TIGR00630 740 EACQGDGVIKIE-MHF--L-PDVYVPCEVCKGKRYNRETLEVKY 779 (924)
T ss_pred CCCccceEEEEE-ccC--C-CCcccCCCCcCCceeChHHHhcee
Confidence 446668887653 222 1 112568999999999877544443
No 82
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=47.42 E-value=60 Score=26.00 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=25.2
Q ss_pred EEEEecccccccCCeeE----------eeecEEEEEEecCCCCCCcEEEEcc
Q 039840 80 FQQMTEQVCEQCQNVKY----------EREGYFVTVDIEKGMQDGQEVVFCE 121 (198)
Q Consensus 80 ~~~~~~~~C~~C~G~g~----------~~~~~~l~V~IP~G~~~G~~I~l~G 121 (198)
++..++.-|..|..++- -.+...+++.-+.+++.||.+.+.-
T Consensus 18 Ve~~r~saCg~C~a~~gCG~~~l~~~~~~~~~~~~v~~~~~~~vGD~V~v~i 69 (154)
T PRK10862 18 LRCEVKAGCSSCASRAGCGSRLLNKLGPQTTHQLVVPSSQPLVPGQKVELGI 69 (154)
T ss_pred EEEecCCCCcCcCCCCCchhhHHHHhcCCCceEEEecCCCCCCCCCEEEEec
Confidence 44444566666653211 1234557777778888888888754
No 83
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=47.02 E-value=16 Score=37.68 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=24.9
Q ss_pred CCCCceeEEEEE-EeCCeeEEEEecccccccCCeeEeeecEEEEE
Q 039840 62 RSCNCRNEVYHK-QIGPGMFQQMTEQVCEQCQNVKYEREGYFVTV 105 (198)
Q Consensus 62 ~~C~G~G~~~~~-~~~~g~~~~~~~~~C~~C~G~g~~~~~~~l~V 105 (198)
+.|.|.|.+... +..+. ...+|+.|+|+.+..+.-.+++
T Consensus 742 ~~C~G~G~~~~~~~f~~~-----~~~~C~~C~G~R~~~e~l~v~~ 781 (943)
T PRK00349 742 EACQGDGVIKIEMHFLPD-----VYVPCDVCKGKRYNRETLEVKY 781 (943)
T ss_pred CcccccceEEEEeccCCC-----ccccCccccCccccccceEEEE
Confidence 446667877643 21111 2468999999999877655443
No 84
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.25 E-value=38 Score=30.14 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=25.8
Q ss_pred eecCCCCc-----CCCCceeEEEEEEeCCeeEEEEecccccccCCeeEee
Q 039840 54 VIKPAPGK-----RSCNCRNEVYHKQIGPGMFQQMTEQVCEQCQNVKYER 98 (198)
Q Consensus 54 ~c~~c~G~-----~~C~G~G~~~~~~~~~g~~~~~~~~~C~~C~G~g~~~ 98 (198)
+|..|.|. ..|+|+=++..+-...+.+ .+|..|+-+|.++
T Consensus 231 ~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~-----~rC~~CNENGLvr 275 (281)
T KOG2824|consen 231 VCESCGGARFLPCSNCHGSCKVHEEEEDDGGV-----LRCLECNENGLVR 275 (281)
T ss_pred cCCCcCCcceEecCCCCCceeeeeeccCCCcE-----EECcccCCCCcee
Confidence 58888876 6788887766531111222 3588888777764
No 85
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=18 Score=33.13 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=10.4
Q ss_pred ecCCCCc-----CCCCceeE
Q 039840 55 IKPAPGK-----RSCNCRNE 69 (198)
Q Consensus 55 c~~c~G~-----~~C~G~G~ 69 (198)
|..|.|. +.|+|.|.
T Consensus 190 ch~c~gRG~~vc~gc~g~G~ 209 (406)
T KOG2813|consen 190 CHACLGRGAMVCHGCSGSGS 209 (406)
T ss_pred hhcccCCCceeccCcCCCCc
Confidence 6677665 66887774
No 86
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=35.76 E-value=64 Score=24.79 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=18.3
Q ss_pred ecEEEEEEecCCCCCCcEEEEccc
Q 039840 99 EGYFVTVDIEKGMQDGQEVVFCED 122 (198)
Q Consensus 99 ~~~~l~V~IP~G~~~G~~I~l~G~ 122 (198)
+...++++-+.+++.||.+.+.-.
T Consensus 40 ~~~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 40 KPITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred CcEEEEecCCCCCCCCCEEEEEec
Confidence 346677778889999998887654
No 87
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=33.88 E-value=2.5e+02 Score=22.65 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=5.3
Q ss_pred cccccccC
Q 039840 85 EQVCEQCQ 92 (198)
Q Consensus 85 ~~~C~~C~ 92 (198)
.-.|+.|.
T Consensus 29 sf~C~~CG 36 (160)
T smart00709 29 SFECEHCG 36 (160)
T ss_pred EEECCCCC
Confidence 45677775
No 88
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=33.82 E-value=66 Score=25.03 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=20.2
Q ss_pred eecEEEEeCCCCcEEEEeeCCC----CCCCeEE
Q 039840 169 VGFEKTIKHLDGHLVDISTKGI----TKPKEVR 197 (198)
Q Consensus 169 ~G~~~~i~~ldG~~~~i~~~~~----t~pg~v~ 197 (198)
-|.+++|.+.||+.+.-+||++ ++.|+.+
T Consensus 22 gg~~vtI~~~dG~~v~~~IP~GpeLiV~eG~~V 54 (118)
T PF01333_consen 22 GGYEVTIETSDGETVVETIPAGPELIVSEGQSV 54 (118)
T ss_dssp SEEEEEEETTTSEEEEEEEESSS-BS--TT-EE
T ss_pred CCEEEEEECCCCCEEEEecCCCCeEEEcCCCEE
Confidence 4568999999999888888864 4445543
No 89
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=33.69 E-value=1.2e+02 Score=22.89 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=35.0
Q ss_pred EEEecCCCCCCcEEEEcccCCCCCCC-----------CCcceEEEEEeeecC-CceEEEEEEeceeccccccceeee
Q 039840 104 TVDIEKGMQDGQEVVFCEDGEPIIDG-----------EPGDLKASFGLLREG-NNLHATVTITLVKLSCGLWDVQAV 168 (198)
Q Consensus 104 ~V~IP~G~~~G~~I~l~G~G~~~~~~-----------~~GDLiv~i~F~R~G-~DL~~~~~I~l~~~~~~~~~~~Al 168 (198)
...||.|+..|+.|.+.|.-...++. ..+|+.++++.+.+. +.+..+... -|.|.-|.-
T Consensus 3 ~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~~~~~~~i~lH~~~rf~~~~~iv~Ns~~------~g~Wg~Ee~ 73 (133)
T PF00337_consen 3 TARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGPNDPDDDIALHFNPRFDEQNVIVRNSRI------NGKWGQEER 73 (133)
T ss_dssp EEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES-STTTTEEEEEEEEECTTEEEEEEEEEE------TTEE-SEEE
T ss_pred eEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCCcCCCCCEEEEEEEEeCCCceEEEeceE------CCEecccee
Confidence 45789999999999999976543321 246677776644333 333333322 355776655
No 90
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=32.02 E-value=16 Score=31.73 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=12.2
Q ss_pred ccccccCCeeEeeecE
Q 039840 86 QVCEQCQNVKYEREGY 101 (198)
Q Consensus 86 ~~C~~C~G~g~~~~~~ 101 (198)
..|++|+|.|++..+.
T Consensus 39 vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 39 VTCPTCQGTGRIPREQ 54 (238)
T ss_pred CcCCCCcCCccCCccc
Confidence 4699999999876544
No 91
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.58 E-value=47 Score=26.50 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=26.1
Q ss_pred eecCCCCc-----CCCCceeEEEEEEe-CCeeEEEEecccccccCCeeEee
Q 039840 54 VIKPAPGK-----RSCNCRNEVYHKQI-GPGMFQQMTEQVCEQCQNVKYER 98 (198)
Q Consensus 54 ~c~~c~G~-----~~C~G~G~~~~~~~-~~g~~~~~~~~~C~~C~G~g~~~ 98 (198)
.|..|.|. ..|+|+=+++.... ..+. ..+|+.|+-+|.++
T Consensus 101 ~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~-----~~rC~~Cnengl~~ 146 (147)
T cd03031 101 VCEGCGGARFVPCSECNGSCKVFAENATAAGG-----FLRCPECNENGLVR 146 (147)
T ss_pred CCCCCCCcCeEECCCCCCcceEEeccCccccc-----EEECCCCCcccccc
Confidence 58888887 78888877665431 1111 24699998877653
No 92
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=30.36 E-value=76 Score=19.70 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=15.7
Q ss_pred eeeecEEEEeCCCCcEEEEe
Q 039840 167 AVVGFEKTIKHLDGHLVDIS 186 (198)
Q Consensus 167 Al~G~~~~i~~ldG~~~~i~ 186 (198)
..-|.+++|.+.||+.+.++
T Consensus 20 ~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 20 EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEESSEEEEEETTTEEEEEE
T ss_pred EEcCCEEEEEECCCCEEEeC
Confidence 45678999999999866654
No 93
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=30.05 E-value=37 Score=31.66 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=13.7
Q ss_pred cccccccCCeeEeeec
Q 039840 85 EQVCEQCQNVKYEREG 100 (198)
Q Consensus 85 ~~~C~~C~G~g~~~~~ 100 (198)
..+|+.|+|+|.+...
T Consensus 390 ~~~Cp~C~G~G~v~s~ 405 (414)
T TIGR00757 390 GTVCPHCSGTGIVKTS 405 (414)
T ss_pred cCCCCCCcCeeEEccH
Confidence 6889999999998654
No 94
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.87 E-value=54 Score=26.28 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=11.5
Q ss_pred cccccccCCeeEeee
Q 039840 85 EQVCEQCQNVKYERE 99 (198)
Q Consensus 85 ~~~C~~C~G~g~~~~ 99 (198)
-.+|+.|.+..+.+.
T Consensus 130 l~~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 130 LPPCPKCGHTEFTRQ 144 (146)
T ss_pred CCCCCCCCCCeeeeC
Confidence 467999999877654
No 95
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=23.91 E-value=1.5e+02 Score=19.07 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=22.8
Q ss_pred ecEEEEeCCCCcEEEEeeCCCCCCCeEE
Q 039840 170 GFEKTIKHLDGHLVDISTKGITKPKEVR 197 (198)
Q Consensus 170 G~~~~i~~ldG~~~~i~~~~~t~pg~v~ 197 (198)
+-...|-|.||.-+.|+.++..+-|+.+
T Consensus 5 ~~~aiVlT~dGeF~~ik~~~~~~vG~eI 32 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKIKRKPGMEVGQEI 32 (56)
T ss_pred CCEEEEEcCCCcEEEEeCCCCCcccCEE
Confidence 4567788999999999998888888764
No 96
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.72 E-value=90 Score=24.38 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=36.8
Q ss_pred EEEecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE------eeecCCce
Q 039840 104 TVDIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG------LLREGNNL 147 (198)
Q Consensus 104 ~V~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~------F~R~G~DL 147 (198)
.+.+|+++..+..+++.+++...+ ...++.+..+. |..+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 179 KSTIKAGALEGKALRLKGLLKSAR-GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred cccCCcccccCceeeecccCCcCC-CCcccceeeeeccCCCCccccCCcc
Confidence 379999999999999999998877 66788888887 77788777
No 97
>COG1470 Predicted membrane protein [Function unknown]
Probab=21.68 E-value=7.4e+02 Score=23.98 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=30.6
Q ss_pred cCCceEEEEEEeceeccccccceeeeeecEEEEeCCC-C--c--EEEEeeCCCCCCCeEE
Q 039840 143 EGNNLHATVTITLVKLSCGLWDVQAVVGFEKTIKHLD-G--H--LVDISTKGITKPKEVR 197 (198)
Q Consensus 143 ~G~DL~~~~~I~l~~~~~~~~~~~Al~G~~~~i~~ld-G--~--~~~i~~~~~t~pg~v~ 197 (198)
.|++=+.++.|++. ..-| |+++- .+.+|+.|. | . .+.|++|+.+.+|+.+
T Consensus 408 sGna~LtdIkl~v~-~Pqg-Wei~V---d~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 408 SGNAPLTDIKLTVN-GPQG-WEIEV---DESTIPSLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred cCCCccceeeEEec-CCcc-ceEEE---CcccccccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 45666677777765 2233 65553 233566664 2 1 3567789999999753
No 98
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=94 Score=21.61 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.3
Q ss_pred EEEEeCCCCcEEEEeeCC
Q 039840 172 EKTIKHLDGHLVDISTKG 189 (198)
Q Consensus 172 ~~~i~~ldG~~~~i~~~~ 189 (198)
.+.++||.|+.++|.|.|
T Consensus 2 ~iKvktLt~KeIeidIep 19 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEP 19 (70)
T ss_pred eeeEeeeccceEEEeeCc
Confidence 467889999888888764
No 99
>PF06954 Resistin: Resistin; InterPro: IPR009714 This family consists of several mammalian resistin proteins. Resistin is a 12.5 kDa cysteine-rich secreted polypeptide first reported from rodent adipocytes. It belongs to a multigene family termed RELMs or FIZZ proteins. Plasma resistin levels are significantly increased in both genetically susceptible and high-fat-diet-induced obese mice. Immunoneutralisation of resistin improves hyperglycemia and insulin resistance in high-fat-diet-induced obese mice, while administration of recombinant resistin impairs glucose tolerance and insulin action in normal mice. It has been demonstrated that increases in circulating resistin levels markedly stimulate glucose production in the presence of fixed physiological insulin levels, whereas insulin suppressed resistin expression. It has been suggested that resistin could be a link between obesity and type 2 diabetes [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1RH7_D 1RGX_C 1RFX_B.
Probab=21.26 E-value=32 Score=25.41 Aligned_cols=9 Identities=67% Similarity=1.601 Sum_probs=4.4
Q ss_pred cccccceee
Q 039840 159 SCGLWDVQA 167 (198)
Q Consensus 159 ~~~~~~~~A 167 (198)
.||-|||.+
T Consensus 59 aCGSWdvr~ 67 (88)
T PF06954_consen 59 ACGSWDVRA 67 (88)
T ss_dssp T---EEEET
T ss_pred cccccccCC
Confidence 378899875
No 100
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.84 E-value=1.8e+02 Score=20.24 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.1
Q ss_pred cEEEEeCCCCcEEEEeeCCCCCCCeEE
Q 039840 171 FEKTIKHLDGHLVDISTKGITKPKEVR 197 (198)
Q Consensus 171 ~~~~i~~ldG~~~~i~~~~~t~pg~v~ 197 (198)
+++++..-||+.++|.+.+. .|+++
T Consensus 56 yev~~~~~dG~~~ev~vD~~--tG~V~ 80 (83)
T PF13670_consen 56 YEVEARDKDGKKVEVYVDPA--TGEVV 80 (83)
T ss_pred EEEEEEECCCCEEEEEEcCC--CCeEe
Confidence 66777788999999999875 45554
No 101
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=20.49 E-value=2.6e+02 Score=23.53 Aligned_cols=46 Identities=33% Similarity=0.563 Sum_probs=29.7
Q ss_pred cEEEEE----EecCCCCCCcEEEEcccCCCCCCCCCcceEEEEE---------eeecCCceEE
Q 039840 100 GYFVTV----DIEKGMQDGQEVVFCEDGEPIIDGEPGDLKASFG---------LLREGNNLHA 149 (198)
Q Consensus 100 ~~~l~V----~IP~G~~~G~~I~l~G~G~~~~~~~~GDLiv~i~---------F~R~G~DL~~ 149 (198)
..-++| =+.+|+-+|+.+.+...-.. .+||+++-.- |.++|+.++.
T Consensus 112 ~f~L~V~GdSM~~~gi~dGDlvvV~~~~~a----~~GdiVvA~i~g~e~TvKrl~~~g~~i~L 170 (201)
T COG1974 112 TFFLRVSGDSMIDAGILDGDLVVVDPTEDA----ENGDIVVALIDGEEATVKRLYRDGNQILL 170 (201)
T ss_pred eEEEEecCCccccCcCCCCCEEEEcCCCCC----CCCCEEEEEcCCCcEEEEEEEEeCCEEEE
Confidence 444555 35678889999999854332 4677766544 6677775544
Done!