BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039842
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family
Protein From Anaplasma Phagocytophilum
Length = 191
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 30/196 (15%)
Query: 65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
++P P V A++A N + G V + AS+W G+VLRGD++KI VG +N+Q+
Sbjct: 26 LVPYAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNT 85
Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
V+H ++S++ +T I +FVTIG C L +CT+
Sbjct: 86 VVH-------------------------TDSMH-----GDTVIGKFVTIGHSCILHACTL 115
Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
+G SI+M+ +++E ++L AGS+L G+ + +GELWAG PA+F+R +T EE L
Sbjct: 116 GNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEEEILY 175
Query: 245 IPKLAVAINDLSKSHF 260
+ K A LS+ +
Sbjct: 176 LQKSAENYIALSRGYL 191
>pdb|1V3W|A Chain A, Structure Of Ferripyochelin Binding Protein From
Pyrococcus Horikoshii Ot3
pdb|1V67|A Chain A, Structure Of Ferripyochelin Binding Protein From
Pyrococcus Horikoshii Ot3
pdb|2FKO|A Chain A, Structure Of Ph1591 From Pyrococcus Horikoshii Ot3
Length = 173
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS 132
P++ A+V N V+ G V + + SVWP +VLRGD+ +I VG SNVQ+ +H +
Sbjct: 11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGY 70
Query: 133 PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQ 192
P T I +VTIG + + IIG
Sbjct: 71 P-------------------------------TEIGEYVTIGHNAMVHGAKVGNYVIIGI 99
Query: 193 HSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEIPKLAVAI 252
S++++G+ + H I+ AG+V+PP + IP L G P + VR LT EE K A
Sbjct: 100 SSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTKKNAEIY 159
Query: 253 NDLSKSHFS 261
+L++ H
Sbjct: 160 VELAEKHIK 168
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
Length = 189
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 24/169 (14%)
Query: 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS 132
PK+ +V + V+ G V + D SVWP +V+RGD++ I +G ++VQ+ VLH S
Sbjct: 20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHAS 79
Query: 133 PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQ 192
Y G+ ++ D VTIG L CTI +IG
Sbjct: 80 DYNPGGYPLIIGD------------------------DVTIGHQAMLHGCTIGNRVLIGM 115
Query: 193 HSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
S++M+G++VE I+ AG+ + PG+ + +G ++ G PA+ VR +T +E
Sbjct: 116 KSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKE 164
>pdb|1XHD|A Chain A, X-Ray Crystal Structure Of Putative Acetyltransferase,
Product Of Bc4754 Gene [bacillus Cereus]
Length = 173
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 31/184 (16%)
Query: 65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
I P + PK+A A++A V + G V V + +S+W +V+RGD++ +G NVQ++C
Sbjct: 5 IYPYKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQC 64
Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
LH + P LI +E VT+G L SC I
Sbjct: 65 TLHQSPQYP---------LI----------------------LEDDVTVGHQVILHSCHI 93
Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
+ + +IG SI+++G+ + A + AGS++ G++IP L G PA+ +R LT E+ +
Sbjct: 94 KKDALIGXGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRKD 153
Query: 245 IPKL 248
++
Sbjct: 154 XERI 157
>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|D Chain D, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|E Chain E, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|F Chain F, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIS|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
Length = 183
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 67 PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL 126
P P++ + + V+ G V + D +WP V+RGD++ + +G +N+Q+ +L
Sbjct: 6 PYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSML 65
Query: 127 HAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEP 186
H S Y P N L +I VT+G L CTI
Sbjct: 66 HVTHKSSYN---------------PDGNPL---------TIGEDVTVGHKVMLHGCTIGN 101
Query: 187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
++G SIL++G++VE ++ AGS++P +R+ +G L+ G+P + +R L+ EE
Sbjct: 102 RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEE 156
>pdb|3VNP|A Chain A, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|B Chain B, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
pdb|3VNP|C Chain C, Crystal Structure Of Hypothetical Protein (Gk2848) From
Geobacillus Kaustophilus
Length = 183
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 31/184 (16%)
Query: 65 IIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERC 124
I P P++A A++A V + G V + + S+W +V+RGD+ +G N+Q+
Sbjct: 3 IYPYKGKTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNS 62
Query: 125 VLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTI 184
+LH + N+P LI IE VT+G L S +
Sbjct: 63 ILHQSPNNP---------LI----------------------IEDGVTVGHQVILHSAIV 91
Query: 185 EPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEETLE 244
+IG SI+++ + + A + AGS++PPG++IP L G PA+ VR LT ++ E
Sbjct: 92 RKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNTLALGRPAKVVRELTEDDIRE 151
Query: 245 IPKL 248
+ ++
Sbjct: 152 MERI 155
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 67 PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL 126
P P + + + V+ G V + D +WP V+RGD+N + +G +N+Q+ VL
Sbjct: 10 PYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVL 69
Query: 127 HAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEP 186
H S S P N L I VT+G L CTI
Sbjct: 70 HVTHKSS---------------SNPHGNPLIIG---------EDVTVGHKVMLHGCTIGN 105
Query: 187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
++G SI+++G+++E ++ AGS++P +R+ +G L+ G+P + +R L+ E
Sbjct: 106 RVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAE 160
>pdb|3OTM|A Chain A, Crystal Structures Of Wild-Type Gamma-Carbonic Anhydrase
From Methanosarcina Thermophila
Length = 212
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 39/225 (17%)
Query: 67 PLGQWVPK-----VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNV 120
P+ W P+ + AY+ P + G+VT+ V P + +R D I VG SNV
Sbjct: 14 PVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNV 73
Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
Q+ VLHA I+ + N + + I V++ +
Sbjct: 74 QDGVVLHALE------------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH 121
Query: 181 S-CTIEPECIIGQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFV 234
+ + IG + + + S V + +LE G +P GR IP G
Sbjct: 122 GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAG----------- 169
Query: 235 RTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
+ E KL +D + SH +E + Y V+L E +K++
Sbjct: 170 --MVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 211
>pdb|1QRF|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
pdb|1QRG|A Chain A, A Closer Look And The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
pdb|1QRM|A Chain A, A Closer Look At The Active Site Of Gamma-carbonic
Anhydrases: High Resolution Crystal Structures Of The
Carbonic Anhydrase From Methanosarcina Thermophila
Length = 213
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 39/225 (17%)
Query: 67 PLGQWVPK-----VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNV 120
P+ W P+ + AY+ P + G+VT+ V P + +R D I VG SNV
Sbjct: 15 PVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNV 74
Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
Q+ VLHA I+ + N + + I V++ +
Sbjct: 75 QDGVVLHALE------------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH 122
Query: 181 S-CTIEPECIIGQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFV 234
+ + IG + + + S V + +LE G +P GR IP G
Sbjct: 123 GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAG----------- 170
Query: 235 RTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
+ E KL +D + SH +E + Y V+L E +K++
Sbjct: 171 --MVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 212
>pdb|1QQ0|A Chain A, Cobalt Substituted Carbonic Anhydrase From Methanosarcina
Thermophila
pdb|1QRE|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
Length = 247
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 39/225 (17%)
Query: 67 PLGQWVPK-----VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNV 120
P+ W P+ + AY+ P + G+VT+ V P + +R D I VG SNV
Sbjct: 49 PVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNV 108
Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
Q+ VLHA I+ + N + + I V++ +
Sbjct: 109 QDGVVLHALE------------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH 156
Query: 181 S-CTIEPECIIGQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFV 234
+ + IG + + + S V + +LE G +P GR IP G
Sbjct: 157 GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAG----------- 204
Query: 235 RTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
+ E KL +D + SH +E + Y V+L E +K++
Sbjct: 205 --MVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 246
>pdb|1QRL|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
Length = 214
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 39/225 (17%)
Query: 67 PLGQWVPK-----VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNV 120
P+ W P+ + AY+ P + G+VT+ V P + +R D I VG SNV
Sbjct: 16 PVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNV 75
Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
Q+ VLHA I+ + N + + I V++ +
Sbjct: 76 QDGVVLHALE------------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH 123
Query: 181 S-CTIEPECIIGQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFV 234
+ + IG + + + S V + +LE G +P GR IP G
Sbjct: 124 GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAG----------- 171
Query: 235 RTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
+ E KL +D + SH +E + Y V+L E +K++
Sbjct: 172 --MVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 213
>pdb|1THJ|A Chain A, Carbonic Anhydrase From Methanosarcina
pdb|1THJ|B Chain B, Carbonic Anhydrase From Methanosarcina
pdb|1THJ|C Chain C, Carbonic Anhydrase From Methanosarcina
Length = 214
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 39/225 (17%)
Query: 67 PLGQWVPK-----VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNV 120
P+ W P+ + AY+ P + G+VT+ V P + +R D I VG SNV
Sbjct: 16 PVTPWNPEPSAPVIDPTAYIDPEASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNV 75
Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
Q+ VLHA I+ + N + + I V++ +
Sbjct: 76 QDGVVLHALE------------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH 123
Query: 181 S-CTIEPECIIGQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFV 234
+ + IG + + + S V + +LE G +P GR IP G
Sbjct: 124 GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAG----------- 171
Query: 235 RTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
+ E KL +D + SH +E + Y V+L E +K++
Sbjct: 172 --MVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 213
>pdb|3OU9|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19f Mutant
From Methanosarcina Thermophila
Length = 213
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 34/214 (15%)
Query: 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQERCVLHAAWN 131
P + AY+ P + G+VT+ V P + +R D I VG SNVQ+ VLHA
Sbjct: 26 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALE- 84
Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECII 190
I+ + N + + I V++ + + + I
Sbjct: 85 -----------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFI 133
Query: 191 GQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEI 245
G + + + S V + +LE G +P GR IP G + E
Sbjct: 134 GMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQ-------------AEA 179
Query: 246 PKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
KL +D + SH +E + Y V+L E +K++
Sbjct: 180 DKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 212
>pdb|3OUP|A Chain A, Crystal Structure Of The Gamma-Carbonic Anhydrase W19n
Mutant From Methanosarcina Thermophila
Length = 213
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 34/214 (15%)
Query: 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQERCVLHAAWN 131
P + AY+ P + G+VT+ V P + +R D I VG SNVQ+ VLHA
Sbjct: 26 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALE- 84
Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECII 190
I+ + N + + I V++ + + + I
Sbjct: 85 -----------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFI 133
Query: 191 GQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEI 245
G + + + S V + +LE G +P GR IP G + E
Sbjct: 134 GMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQ-------------AEA 179
Query: 246 PKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
KL +D + SH +E + Y V+L E +K++
Sbjct: 180 DKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 212
>pdb|3OTZ|A Chain A, Crystal Structure Of Gamma-Carbonic Anhydrase W19a Mutant
From Metanosarcina Thermophila
Length = 213
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 34/214 (15%)
Query: 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNVQERCVLHAAWN 131
P + AY+ P + G+VT+ V P + +R D I VG SNVQ+ VLHA
Sbjct: 26 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALE- 84
Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECII 190
I+ + N + + I V++ + + + I
Sbjct: 85 -----------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFI 133
Query: 191 GQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFVRTLTHEETLEI 245
G + + + S V + +LE G +P GR IP G + E
Sbjct: 134 GMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQ-------------AEA 179
Query: 246 PKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
KL +D + SH +E + Y V+L E +K++
Sbjct: 180 DKLPEVTDDYAYSHTNEAVVYVNVHL-AEGYKET 212
>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 1
pdb|3KWE|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 2
Length = 213
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 27/157 (17%)
Query: 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNK-ITVGFCSNVQERCVLHAAWN 131
P++A AYV L G V + D + PG+ +R D +G +N+Q+ V+H
Sbjct: 40 PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIG 191
R +G Y W+ SI I I C IG
Sbjct: 100 G--RVIG-------------DDGQEYSVWIGDNVSITHMALIHG-----PAYIGDGCFIG 139
Query: 192 QHSILME-----GSMVETHAILEAGSVLPPGRRIPTG 223
S + G +V H +++ + PPG+ +P+G
Sbjct: 140 FRSTVFNARVGAGCVVMMHVLIQDVEI-PPGKYVPSG 175
>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|B Chain B, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|C Chain C, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|D Chain D, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|E Chain E, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|F Chain F, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
Length = 229
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 27/157 (17%)
Query: 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNK-ITVGFCSNVQERCVLHAAWN 131
P++A AYV L G V + D + PG+ +R D +G +N+Q+ V+H
Sbjct: 40 PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQ 99
Query: 132 SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIG 191
R +G Y W+ SI I I C IG
Sbjct: 100 G--RVIG-------------DDGQEYSVWIGDNVSITHMALIHG-----PAYIGDGCFIG 139
Query: 192 QHSILME-----GSMVETHAILEAGSVLPPGRRIPTG 223
S + G +V H +++ + PPG+ +P+G
Sbjct: 140 FRSTVFNARVGAGCVVMMHVLIQDVEI-PPGKYVPSG 175
>pdb|3OW5|A Chain A, Crystal Structure Of The Y200a Mutant Of Gamma Carbonic
Anhydrase From Methanosarcina Thermophila
Length = 213
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 39/225 (17%)
Query: 67 PLGQWVPK-----VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLN-KITVGFCSNV 120
P+ W P+ + AY+ P + G+VT+ V P + +R D I VG SNV
Sbjct: 15 PVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNV 74
Query: 121 QERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR 180
Q+ VLHA I+ + N + + I V++ +
Sbjct: 75 QDGVVLHALE------------TINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH 122
Query: 181 S-CTIEPECIIGQHSILMEGSMVETHAILEA-----GSVLPPGRRIPTGELWAGNPARFV 234
+ + IG + + + S V + +LE G +P GR IP G
Sbjct: 123 GPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIPAG----------- 170
Query: 235 RTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKS 279
+ E KL +D + SH +E + V+L E +K++
Sbjct: 171 --MVVTSQAEADKLPEVTDDYAYSHTNEAVVAVNVHL-AEGYKET 212
>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FS8|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FSB|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSB|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSC|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
pdb|3FSC|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
Length = 273
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 19/162 (11%)
Query: 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL---NKITVGFCSNVQERCVLHAAWN 131
+ +A + V+ G + D +R + N + +G S++Q + N
Sbjct: 73 IGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVN 132
Query: 132 -SPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECII 190
FVG S++ D P + + P S E L TIE +I
Sbjct: 133 IHSNVFVGEKSIIKDFVWLFPH---VVLTNDPTPPSNE----------LLGVTIELFAVI 179
Query: 191 GQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232
S+++ G + A++ AG+V+ + +P + GNPAR
Sbjct: 180 AARSVVLPGIHINEDALVGAGAVVT--KDVPKETVVVGNPAR 219
>pdb|1QHD|A Chain A, Crystal Structure Of Vp6, The Major Capsid Protein Of
Group A Rotavirus
Length = 398
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 2/128 (1%)
Query: 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ-MS 149
+T DGA+ W + + N + + F N Q A + + F ++ + Q M
Sbjct: 239 ITSADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFGTIIA-RNFDTIRLSFQLMR 297
Query: 150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE 209
P A P E T+G + S E ++L + V +
Sbjct: 298 PPNMTPAVAALFPNAQPFEHHATVGLTLRIESAVCESVLADASETMLANVTSVRQEYAIP 357
Query: 210 AGSVLPPG 217
G V PPG
Sbjct: 358 VGPVFPPG 365
>pdb|3GZU|C Chain C, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|D Chain D, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|E Chain E, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|O Chain O, Vp7 Recoated Rotavirus Dlp
Length = 397
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 2/128 (1%)
Query: 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ-MS 149
+T DGA+ W + + N + + F N Q A + + F ++ + Q M
Sbjct: 238 ITSADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFGTIIA-RNFDTIRLSFQLMR 296
Query: 150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE 209
P A P E T+G + S E ++L + V +
Sbjct: 297 PPNMTPAVAALFPNAQPFEHHATVGLTLRIESAVCESVLADASETMLANVTSVRQEYAIP 356
Query: 210 AGSVLPPG 217
G V PPG
Sbjct: 357 VGPVFPPG 364
>pdb|3HJJ|A Chain A, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3HJJ|B Chain B, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3HJJ|C Chain C, Crystal Structure Of Maltose O-Acetyltransferase From
Bacillus Anthracis
pdb|3IGJ|A Chain A, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
pdb|3IGJ|B Chain B, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
pdb|3IGJ|C Chain C, Crystal Structure Of Maltose O-Acetyltransferase Complexed
With Acetyl Coenzyme A From Bacillus Anthracis
Length = 190
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 190 IGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL 237
+G +I+ G + +A++ +G+V+ + +P + GNPA+ ++T+
Sbjct: 143 VGGGAIINPGVSIGDNAVIASGAVVT--KDVPNNVVVGGNPAKVIKTI 188
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
Aminomutase (Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde
Aminomutase (Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde
Aminomutase (aminotransferase) Reduced With
Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde
Aminomutase (aminotransferase) Reduced With
Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
Aminomutase In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde
Aminomutase In Complex With Gabaculine
Length = 432
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 53 DRVK----WDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGAS 98
DRVK WD G R I +G W P + A+ P V+ A +V + G S
Sbjct: 44 DRVKDAYAWDVDGNRYIDYVGTWGPAICGHAH--PEVIEALKVAMEKGTS 91
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 53 DRVK----WDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGAS 98
DRVK WD G R I +G W P + A+ P V+ A +V + G S
Sbjct: 39 DRVKDAYAWDVDGNRYIDYVGTWGPAICGHAH--PEVIEALKVAMEKGTS 86
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 53 DRVK----WDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGAS 98
DRVK WD G R I +G W P + A+ P V+ A +V + G S
Sbjct: 44 DRVKDAYAWDVDGNRYIDYVGTWGPAICGHAH--PEVIEALKVAMEKGTS 91
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 53 DRVK----WDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGAS 98
DRVK WD G R I +G W P + A+ P V+ A +V + G S
Sbjct: 39 DRVKDAYAWDVDGNRYIDYVGTWGPAICGHAH--PEVIEALKVAMEKGTS 86
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 53 DRVK----WDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGAS 98
DRVK WD G R I +G W P + A+ P V+ A +V + G S
Sbjct: 39 DRVKDAYAWDVDGNRYIDYVGTWGPAICGHAH--PEVIEALKVAMEKGTS 86
>pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
Length = 203
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241
TI IG H ++ G + ++++ AGS++ + IP + AG P R +R + +
Sbjct: 133 TIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT--KDIPPNVVAAGVPCRVIREINDRD 189
>pdb|3KZ4|C Chain C, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|D Chain D, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|E Chain E, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|F Chain F, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|G Chain G, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|H Chain H, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|I Chain I, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|J Chain J, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|K Chain K, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|L Chain L, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|M Chain M, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|N Chain N, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|O Chain O, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|F Chain F, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|G Chain G, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|H Chain H, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|I Chain I, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|J Chain J, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|K Chain K, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|L Chain L, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|M Chain M, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|N Chain N, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|O Chain O, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 397
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Query: 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ-MS 149
+ DGA+ W + + N + V F N Q A + + F ++ + Q M
Sbjct: 238 INSADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQARFGTIIA-RNFDTIRLSFQLMR 296
Query: 150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE 209
P A P E T+G + S E ++L + V +
Sbjct: 297 PPNMTPAVAALFPNAQPFEHHATVGLTLRIESAVCESVLADASETMLANVTSVRQEYAIP 356
Query: 210 AGSVLPPG 217
G V PPG
Sbjct: 357 VGPVFPPG 364
>pdb|3N09|C Chain C, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|D Chain D, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|E Chain E, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
Length = 397
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 2/128 (1%)
Query: 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ-MS 149
+ DGA+ W + + N + V F N Q A + + F ++ + Q M
Sbjct: 238 INSADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQARFGTIIA-RNFDTIRLSFQLMR 296
Query: 150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE 209
P A P E T+G + S E ++L + V +
Sbjct: 297 PPNMTPAVAALFPNAQPFEHHATVGLTLRIESAVCESVLADASKTMLANVTSVRQEYAIP 356
Query: 210 AGSVLPPG 217
G V PPG
Sbjct: 357 VGPVFPPG 364
>pdb|1OCX|A Chain A, E. Coli Maltose-O-Acetyltransferase
pdb|1OCX|B Chain B, E. Coli Maltose-O-Acetyltransferase
pdb|1OCX|C Chain C, E. Coli Maltose-O-Acetyltransferase
Length = 182
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 180 RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL 237
+ TI IG +++ G + + ++ +G+V+ + +P + GNPAR ++ L
Sbjct: 127 KPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT--KDVPDNVVVGGNPARIIKKL 182
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 159 AWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR 218
A++ +E +IGA + I P CI+G H + EG+++++H ++ + +
Sbjct: 6 AFVHPTAIVEEGASIGA-----NAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN 60
Query: 219 RI----PTGEL-----WAGNPAR 232
I GE+ +AG P R
Sbjct: 61 EIYQFASIGEVNQDLKYAGEPTR 83
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 159 AWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR 218
A++ +E +IGA + I P CI+G H + EG+++++H ++ + +
Sbjct: 8 AFVHPTAIVEEGASIGA-----NAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN 62
Query: 219 RI----PTGEL-----WAGNPAR 232
I GE+ +AG P R
Sbjct: 63 EIYQFASIGEVNQDLKYAGEPTR 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,456,420
Number of Sequences: 62578
Number of extensions: 287398
Number of successful extensions: 691
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 52
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)