Query 039842
Match_columns 284
No_of_seqs 285 out of 2320
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02472 uncharacterized prote 100.0 3.8E-37 8.3E-42 270.5 26.9 246 1-284 1-246 (246)
2 COG0663 PaaY Carbonic anhydras 100.0 7.2E-34 1.6E-38 233.7 18.8 167 68-265 7-173 (176)
3 PLN02296 carbonate dehydratase 100.0 2.4E-29 5.2E-34 223.8 22.2 186 59-269 39-224 (269)
4 PRK13627 carnitine operon prot 100.0 8.7E-29 1.9E-33 211.2 20.3 173 66-269 4-176 (196)
5 TIGR02287 PaaY phenylacetic ac 100.0 8.4E-29 1.8E-33 210.6 18.1 169 67-266 3-171 (192)
6 cd04745 LbH_paaY_like paaY-lik 99.9 3.8E-25 8.1E-30 182.5 20.1 154 73-257 1-154 (155)
7 cd04650 LbH_FBP Ferripyochelin 99.9 1.6E-24 3.4E-29 178.6 19.4 153 73-256 1-153 (154)
8 cd04645 LbH_gamma_CA_like Gamm 99.9 8.2E-24 1.8E-28 174.1 18.0 151 75-256 2-152 (153)
9 COG1044 LpxD UDP-3-O-[3-hydrox 99.9 1.5E-24 3.3E-29 194.4 13.7 33 1-35 28-60 (338)
10 cd04646 LbH_Dynactin_6 Dynacti 99.9 7.6E-24 1.7E-28 176.3 16.4 136 74-234 1-136 (164)
11 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 2E-24 4.3E-29 197.9 12.2 54 181-236 253-306 (324)
12 cd03359 LbH_Dynactin_5 Dynacti 99.9 5.4E-22 1.2E-26 164.7 18.1 155 75-252 4-160 (161)
13 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 2.9E-22 6.3E-27 185.5 15.5 51 182-234 262-313 (343)
14 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 1.2E-21 2.6E-26 174.2 18.5 148 73-234 30-189 (254)
15 PRK05289 UDP-N-acetylglucosami 99.9 9.5E-22 2E-26 175.5 17.7 147 74-234 34-192 (262)
16 PRK12461 UDP-N-acetylglucosami 99.9 2.1E-21 4.5E-26 172.3 19.7 147 73-233 30-187 (255)
17 TIGR01852 lipid_A_lpxA acyl-[a 99.9 2.5E-21 5.4E-26 172.1 18.3 149 72-234 28-188 (254)
18 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.9 5E-21 1.1E-25 167.5 15.6 127 75-241 83-218 (231)
19 PRK09527 lacA galactoside O-ac 99.8 1.6E-20 3.4E-25 160.9 14.3 137 69-242 52-190 (203)
20 cd00710 LbH_gamma_CA Gamma car 99.8 3E-19 6.4E-24 149.1 18.7 160 72-268 2-163 (167)
21 COG1043 LpxA Acyl-[acyl carrie 99.8 4.6E-20 1E-24 157.5 11.8 149 72-234 15-193 (260)
22 PRK10502 putative acyl transfe 99.8 8.7E-20 1.9E-24 154.4 12.9 130 69-238 48-179 (182)
23 cd03352 LbH_LpxD UDP-3-O-acyl- 99.8 4.1E-19 8.9E-24 152.7 16.2 161 71-236 18-203 (205)
24 TIGR03308 phn_thr-fam phosphon 99.8 2.5E-19 5.4E-24 154.1 14.4 139 74-238 21-163 (204)
25 PRK00892 lpxD UDP-3-O-[3-hydro 99.8 9E-19 1.9E-23 162.2 17.7 116 164-281 225-341 (343)
26 PRK10092 maltose O-acetyltrans 99.8 9.9E-19 2.2E-23 147.8 14.6 123 77-236 58-182 (183)
27 PRK09677 putative lipopolysacc 99.8 1.6E-18 3.4E-23 147.9 15.2 140 72-242 43-189 (192)
28 COG1044 LpxD UDP-3-O-[3-hydrox 99.8 1.6E-18 3.5E-23 155.7 14.8 136 73-228 130-289 (338)
29 cd03358 LbH_WxcM_N_like WcxM-l 99.8 5.6E-18 1.2E-22 133.0 13.6 118 75-234 1-118 (119)
30 TIGR01852 lipid_A_lpxA acyl-[a 99.8 1.4E-17 3E-22 148.1 17.4 158 71-238 9-175 (254)
31 cd03357 LbH_MAT_GAT Maltose O- 99.8 5.6E-18 1.2E-22 141.7 13.2 127 71-234 41-169 (169)
32 KOG3121 Dynactin, subunit p25 99.8 4.1E-18 8.9E-23 134.2 9.7 163 75-267 16-180 (184)
33 PRK12461 UDP-N-acetylglucosami 99.8 2E-17 4.4E-22 146.8 14.8 159 71-239 10-176 (255)
34 COG1043 LpxA Acyl-[acyl carrie 99.7 1.8E-17 3.9E-22 141.7 13.2 160 73-239 4-181 (260)
35 cd03353 LbH_GlmU_C N-acetyl-gl 99.7 5.3E-17 1.2E-21 138.4 16.2 150 73-230 16-191 (193)
36 TIGR01173 glmU UDP-N-acetylglu 99.7 4.1E-17 8.9E-22 155.9 16.8 156 74-236 263-443 (451)
37 TIGR03570 NeuD_NnaD sugar O-ac 99.7 4.5E-17 9.7E-22 138.6 14.8 116 76-231 85-201 (201)
38 cd03350 LbH_THP_succinylT 2,3, 99.7 5.8E-17 1.2E-21 131.2 14.5 124 73-231 14-139 (139)
39 cd05825 LbH_wcaF_like wcaF-lik 99.7 5.5E-17 1.2E-21 125.6 13.1 106 89-234 2-107 (107)
40 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 6.9E-17 1.5E-21 142.5 14.7 114 78-230 100-237 (269)
41 cd03360 LbH_AT_putative Putati 99.7 9.4E-17 2E-21 135.3 14.5 115 76-230 82-197 (197)
42 cd03350 LbH_THP_succinylT 2,3, 99.7 1E-16 2.2E-21 129.8 13.9 119 80-240 3-130 (139)
43 PRK09451 glmU bifunctional N-a 99.7 1.4E-16 3E-21 152.9 17.0 156 74-236 267-448 (456)
44 KOG4042 Dynactin subunit p27/W 99.7 1.7E-17 3.7E-22 131.6 7.4 165 73-259 9-178 (190)
45 COG0110 WbbJ Acetyltransferase 99.7 1.2E-16 2.5E-21 135.6 13.1 130 76-241 50-182 (190)
46 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 2.1E-16 4.5E-21 140.6 15.1 128 80-240 99-260 (272)
47 PRK11132 cysE serine acetyltra 99.7 8.2E-17 1.8E-21 143.2 12.5 117 81-238 132-248 (273)
48 COG0663 PaaY Carbonic anhydras 99.7 6.2E-17 1.3E-21 133.6 10.8 100 92-227 13-117 (176)
49 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.7 3.4E-16 7.4E-21 139.2 15.8 159 71-238 10-176 (254)
50 PRK05289 UDP-N-acetylglucosami 99.7 2E-16 4.4E-21 141.2 14.2 160 70-238 12-179 (262)
51 PRK14357 glmU bifunctional N-a 99.7 3.7E-16 8E-21 149.5 15.7 152 73-236 256-436 (448)
52 PRK14355 glmU bifunctional N-a 99.7 4.5E-16 9.8E-21 149.4 16.3 154 73-233 269-447 (459)
53 cd05636 LbH_G1P_TT_C_like Puta 99.7 8.8E-16 1.9E-20 127.5 15.5 115 73-226 18-156 (163)
54 cd03349 LbH_XAT Xenobiotic acy 99.7 5.7E-16 1.2E-20 126.3 13.8 122 91-240 2-130 (145)
55 PRK14353 glmU bifunctional N-a 99.7 5.2E-16 1.1E-20 148.3 15.8 155 74-236 270-433 (446)
56 PRK14360 glmU bifunctional N-a 99.7 5.3E-16 1.2E-20 148.4 14.8 159 74-236 264-443 (450)
57 PLN02694 serine O-acetyltransf 99.7 3.6E-16 7.8E-21 139.3 12.6 107 90-237 160-266 (294)
58 PRK14353 glmU bifunctional N-a 99.7 3.4E-16 7.3E-21 149.6 13.3 152 75-244 265-424 (446)
59 PRK14352 glmU bifunctional N-a 99.7 8.7E-16 1.9E-20 148.4 15.4 157 74-238 273-455 (482)
60 COG1207 GlmU N-acetylglucosami 99.7 4.3E-16 9.3E-21 143.3 12.5 152 73-231 269-445 (460)
61 PLN02739 serine acetyltransfer 99.7 8.2E-16 1.8E-20 139.6 14.0 57 181-239 257-313 (355)
62 PRK14359 glmU bifunctional N-a 99.7 1.2E-15 2.5E-20 145.2 15.7 69 163-233 341-418 (430)
63 cd03352 LbH_LpxD UDP-3-O-acyl- 99.7 2E-15 4.3E-20 129.8 15.5 159 74-241 3-191 (205)
64 cd04647 LbH_MAT_like Maltose O 99.7 1.3E-15 2.9E-20 117.4 12.8 109 90-234 1-109 (109)
65 TIGR01853 lipid_A_lpxD UDP-3-O 99.7 2.4E-15 5.2E-20 138.0 15.5 227 1-241 21-294 (324)
66 PRK13627 carnitine operon prot 99.6 1.8E-15 3.8E-20 129.3 11.9 143 92-271 12-167 (196)
67 PRK14358 glmU bifunctional N-a 99.6 4.2E-15 9E-20 143.6 15.6 148 74-228 272-444 (481)
68 TIGR01172 cysE serine O-acetyl 99.6 3.8E-15 8.2E-20 123.7 12.5 52 179-232 111-162 (162)
69 PLN02296 carbonate dehydratase 99.6 2.6E-15 5.5E-20 134.0 12.0 145 90-271 52-215 (269)
70 TIGR02287 PaaY phenylacetic ac 99.6 3.5E-15 7.6E-20 127.1 11.1 101 91-227 9-114 (192)
71 COG1045 CysE Serine acetyltran 99.6 3.4E-15 7.4E-20 124.6 10.7 54 182-237 120-173 (194)
72 PLN02472 uncharacterized prote 99.6 4.9E-15 1.1E-19 130.5 12.1 100 92-227 61-171 (246)
73 PLN02357 serine acetyltransfer 99.6 5.9E-15 1.3E-19 135.0 12.7 106 91-237 227-332 (360)
74 PRK14356 glmU bifunctional N-a 99.6 2.2E-14 4.8E-19 137.5 15.9 70 164-235 373-450 (456)
75 PRK14354 glmU bifunctional N-a 99.6 1.9E-14 4.2E-19 138.0 15.4 153 73-233 266-443 (458)
76 cd00710 LbH_gamma_CA Gamma car 99.6 4.9E-14 1.1E-18 117.6 15.0 48 165-213 83-130 (167)
77 KOG4750 Serine O-acetyltransfe 99.6 3.8E-15 8.3E-20 126.0 7.3 55 183-239 202-256 (269)
78 cd05636 LbH_G1P_TT_C_like Puta 99.6 4.4E-14 9.5E-19 117.3 13.6 101 74-214 37-162 (163)
79 cd04745 LbH_paaY_like paaY-lik 99.6 2E-14 4.4E-19 118.4 11.0 99 93-227 3-106 (155)
80 PRK10191 putative acyl transfe 99.6 4.3E-14 9.4E-19 115.1 12.3 52 181-234 92-143 (146)
81 cd04645 LbH_gamma_CA_like Gamm 99.6 1.9E-14 4.1E-19 118.3 10.0 98 93-226 2-104 (153)
82 cd04646 LbH_Dynactin_6 Dynacti 99.6 1.2E-13 2.6E-18 115.0 14.2 107 73-215 18-135 (164)
83 cd03354 LbH_SAT Serine acetylt 99.5 1.2E-13 2.6E-18 105.6 12.5 99 91-230 3-101 (101)
84 PRK14360 glmU bifunctional N-a 99.5 2E-13 4.3E-18 130.7 13.9 152 80-241 251-431 (450)
85 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 3.7E-13 7.9E-18 119.0 14.1 120 74-217 102-234 (269)
86 cd04649 LbH_THP_succinylT_puta 99.5 2.4E-13 5.2E-18 109.5 11.1 100 79-220 2-110 (147)
87 COG2171 DapD Tetrahydrodipicol 99.5 1.6E-13 3.6E-18 119.6 10.9 107 76-220 106-221 (271)
88 TIGR01173 glmU UDP-N-acetylglu 99.5 3.5E-13 7.6E-18 128.8 14.3 152 85-241 256-431 (451)
89 KOG1461 Translation initiation 99.5 9.9E-14 2.2E-18 132.5 10.3 105 75-219 318-422 (673)
90 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 3.4E-13 7.4E-18 118.1 12.2 109 93-240 83-200 (231)
91 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 1.2E-12 2.5E-17 111.6 15.0 59 181-240 119-184 (193)
92 cd04650 LbH_FBP Ferripyochelin 99.5 2E-13 4.3E-18 112.5 9.7 99 93-227 3-106 (154)
93 PRK14352 glmU bifunctional N-a 99.5 6.9E-13 1.5E-17 128.2 15.0 76 165-241 358-440 (482)
94 PRK14355 glmU bifunctional N-a 99.5 8.8E-13 1.9E-17 126.7 15.0 157 79-240 256-437 (459)
95 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 1.3E-12 2.8E-17 116.3 14.5 118 76-218 113-238 (272)
96 PRK14358 glmU bifunctional N-a 99.5 5.1E-13 1.1E-17 129.1 12.8 157 81-242 260-441 (481)
97 cd03359 LbH_Dynactin_5 Dynacti 99.4 3.9E-12 8.5E-17 105.5 15.3 101 72-208 21-134 (161)
98 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 1.8E-12 3.8E-17 116.0 11.3 54 165-220 225-287 (341)
99 TIGR03308 phn_thr-fam phosphon 99.4 4.3E-12 9.4E-17 109.2 13.4 65 75-180 5-69 (204)
100 PRK09451 glmU bifunctional N-a 99.4 3.6E-12 7.8E-17 122.4 13.9 62 179-241 367-435 (456)
101 TIGR03535 DapD_actino 2,3,4,5- 99.4 2.9E-12 6.3E-17 114.0 12.1 103 75-220 150-262 (319)
102 PRK14357 glmU bifunctional N-a 99.4 4.5E-12 9.7E-17 121.3 13.7 151 80-240 244-423 (448)
103 TIGR02353 NRPS_term_dom non-ri 99.4 2.3E-12 5E-17 129.2 11.7 105 89-236 111-215 (695)
104 PRK14354 glmU bifunctional N-a 99.4 8E-12 1.7E-16 119.9 15.0 153 79-241 253-434 (458)
105 PRK14359 glmU bifunctional N-a 99.4 2.6E-12 5.6E-17 122.2 11.3 152 76-242 251-409 (430)
106 PRK14356 glmU bifunctional N-a 99.4 8.2E-12 1.8E-16 119.8 14.6 161 75-241 266-439 (456)
107 cd03360 LbH_AT_putative Putati 99.4 7.9E-12 1.7E-16 105.1 12.7 104 97-239 85-189 (197)
108 PRK09677 putative lipopolysacc 99.4 2.2E-11 4.8E-16 103.9 14.3 43 164-208 130-173 (192)
109 TIGR03570 NeuD_NnaD sugar O-ac 99.3 1.3E-11 2.9E-16 104.8 12.7 104 97-239 88-192 (201)
110 COG1207 GlmU N-acetylglucosami 99.3 1.5E-11 3.1E-16 113.7 11.4 125 79-213 256-386 (460)
111 cd04649 LbH_THP_succinylT_puta 99.3 5.2E-11 1.1E-15 96.0 12.9 97 74-203 15-111 (147)
112 cd05635 LbH_unknown Uncharacte 99.3 5.7E-11 1.2E-15 90.9 12.2 86 89-215 10-95 (101)
113 TIGR02353 NRPS_term_dom non-ri 99.3 1.7E-11 3.7E-16 123.0 11.4 102 87-231 594-695 (695)
114 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 7.2E-11 1.6E-15 86.5 11.0 79 93-212 2-80 (81)
115 cd05787 LbH_eIF2B_epsilon eIF- 99.3 7.4E-11 1.6E-15 85.5 10.6 77 93-209 2-78 (79)
116 KOG1461 Translation initiation 99.3 2E-11 4.3E-16 117.0 9.2 113 72-223 295-414 (673)
117 cd05635 LbH_unknown Uncharacte 99.2 1.8E-10 3.9E-15 88.1 12.2 32 165-196 63-94 (101)
118 cd03356 LbH_G1P_AT_C_like Left 99.2 1.4E-10 3E-15 84.3 10.7 77 93-209 2-78 (79)
119 cd03358 LbH_WxcM_N_like WcxM-l 99.2 1.3E-10 2.8E-15 90.9 11.1 54 93-184 1-54 (119)
120 PRK05293 glgC glucose-1-phosph 99.2 8.8E-11 1.9E-15 110.1 11.5 95 83-214 281-379 (380)
121 PRK11132 cysE serine acetyltra 99.2 9.2E-11 2E-15 104.6 10.7 92 75-200 138-230 (273)
122 PRK10502 putative acyl transfe 99.2 2E-10 4.2E-15 97.2 11.6 56 91-180 52-107 (182)
123 TIGR01172 cysE serine O-acetyl 99.2 2E-10 4.4E-15 95.3 10.8 89 78-200 61-150 (162)
124 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 2.1E-10 4.6E-15 102.8 11.5 97 75-203 175-288 (341)
125 PRK10191 putative acyl transfe 99.2 2.3E-10 5E-15 93.2 10.7 87 79-200 42-129 (146)
126 cd05824 LbH_M1P_guanylylT_C Ma 99.2 3E-10 6.4E-15 83.0 10.2 45 165-209 35-79 (80)
127 cd00208 LbetaH Left-handed par 99.2 2.7E-10 5.8E-15 81.8 9.3 76 92-214 2-77 (78)
128 COG1045 CysE Serine acetyltran 99.2 2E-10 4.4E-15 96.1 9.7 106 75-225 64-170 (194)
129 PLN02739 serine acetyltransfer 99.2 3E-10 6.5E-15 103.6 11.4 37 164-200 257-294 (355)
130 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 5.5E-10 1.2E-14 81.7 10.7 79 75-194 2-80 (81)
131 cd05787 LbH_eIF2B_epsilon eIF- 99.1 4.4E-10 9.6E-15 81.4 9.7 75 114-225 2-76 (79)
132 COG1208 GCD1 Nucleoside-diphos 99.1 5E-10 1.1E-14 104.4 12.3 96 85-226 256-351 (358)
133 TIGR03535 DapD_actino 2,3,4,5- 99.1 4.2E-10 9E-15 100.4 10.8 39 164-203 225-263 (319)
134 PRK09527 lacA galactoside O-ac 99.1 1.1E-09 2.4E-14 94.0 11.9 102 92-227 57-165 (203)
135 PLN02694 serine O-acetyltransf 99.1 5.2E-10 1.1E-14 100.0 9.7 88 79-200 161-249 (294)
136 cd03356 LbH_G1P_AT_C_like Left 99.1 1.5E-09 3.2E-14 78.9 9.7 60 165-225 17-76 (79)
137 cd05824 LbH_M1P_guanylylT_C Ma 99.1 2.2E-09 4.7E-14 78.4 10.5 77 75-191 2-79 (80)
138 cd00208 LbetaH Left-handed par 99.1 2.4E-09 5.1E-14 76.9 10.6 34 74-107 2-35 (78)
139 cd04651 LbH_G1P_AT_C Glucose-1 99.1 2.8E-09 6E-14 81.9 11.2 50 165-215 29-78 (104)
140 cd03357 LbH_MAT_GAT Maltose O- 99.0 2.4E-09 5.2E-14 89.5 11.6 36 164-199 118-154 (169)
141 PLN02357 serine acetyltransfer 99.0 1.8E-09 3.8E-14 99.2 11.3 88 79-200 227-315 (360)
142 TIGR01208 rmlA_long glucose-1- 99.0 3.1E-09 6.7E-14 98.8 12.6 106 81-233 245-351 (353)
143 PLN02241 glucose-1-phosphate a 99.0 2.6E-09 5.7E-14 102.2 12.4 114 84-224 310-434 (436)
144 COG2171 DapD Tetrahydrodipicol 99.0 2E-09 4.3E-14 94.2 9.9 105 73-204 109-223 (271)
145 cd03354 LbH_SAT Serine acetylt 99.0 5.9E-09 1.3E-13 79.5 11.0 43 164-208 54-97 (101)
146 cd04647 LbH_MAT_like Maltose O 99.0 6.5E-09 1.4E-13 79.8 11.1 97 74-209 3-102 (109)
147 cd04651 LbH_G1P_AT_C Glucose-1 99.0 7.7E-09 1.7E-13 79.5 10.7 80 79-200 2-81 (104)
148 cd05825 LbH_wcaF_like wcaF-lik 99.0 9.1E-09 2E-13 79.4 10.9 76 111-225 3-82 (107)
149 PRK10092 maltose O-acetyltrans 98.9 1.2E-08 2.6E-13 86.3 11.7 36 164-199 129-165 (183)
150 PRK02862 glgC glucose-1-phosph 98.9 9.5E-09 2.1E-13 98.1 11.4 95 90-225 308-428 (429)
151 KOG1462 Translation initiation 98.9 7.7E-09 1.7E-13 94.5 8.4 87 85-212 329-415 (433)
152 PRK05293 glgC glucose-1-phosph 98.9 2E-08 4.4E-13 94.2 11.4 53 164-217 308-360 (380)
153 COG1208 GCD1 Nucleoside-diphos 98.8 2.5E-08 5.4E-13 93.0 11.5 94 75-214 264-357 (358)
154 cd03349 LbH_XAT Xenobiotic acy 98.8 4.1E-08 9E-13 80.0 11.2 110 74-208 3-116 (145)
155 TIGR01208 rmlA_long glucose-1- 98.8 2.9E-08 6.3E-13 92.2 11.7 100 74-209 250-352 (353)
156 PLN02241 glucose-1-phosphate a 98.8 2.5E-08 5.5E-13 95.4 11.3 51 164-214 384-436 (436)
157 KOG3121 Dynactin, subunit p25 98.8 7.6E-09 1.6E-13 82.1 5.9 109 74-229 35-156 (184)
158 TIGR02091 glgC glucose-1-phosp 98.7 9E-08 2E-12 89.1 11.1 50 165-215 311-360 (361)
159 KOG1460 GDP-mannose pyrophosph 98.7 6.9E-08 1.5E-12 85.7 8.3 30 165-194 324-353 (407)
160 TIGR02091 glgC glucose-1-phosp 98.6 1.9E-07 4E-12 87.0 10.2 82 74-197 279-360 (361)
161 KOG1462 Translation initiation 98.6 7.6E-08 1.6E-12 88.1 7.3 61 164-226 351-411 (433)
162 PRK00844 glgC glucose-1-phosph 98.6 2.8E-07 6E-12 87.5 11.1 33 165-197 349-381 (407)
163 COG0110 WbbJ Acetyltransferase 98.6 6.7E-07 1.5E-11 75.6 11.2 76 164-240 87-164 (190)
164 KOG4750 Serine O-acetyltransfe 98.6 1.8E-07 4E-12 79.7 7.6 35 166-200 202-237 (269)
165 KOG4042 Dynactin subunit p27/W 98.6 1.2E-07 2.7E-12 75.8 5.9 105 90-229 8-131 (190)
166 COG0448 GlgC ADP-glucose pyrop 98.6 3.6E-07 7.9E-12 84.5 9.9 88 75-199 276-363 (393)
167 TIGR02092 glgD glucose-1-phosp 98.5 5.4E-07 1.2E-11 84.2 10.1 51 164-215 304-354 (369)
168 PRK00725 glgC glucose-1-phosph 98.5 4.1E-07 9E-12 86.8 9.3 55 164-219 343-397 (425)
169 PRK00725 glgC glucose-1-phosph 98.5 5.5E-07 1.2E-11 85.9 10.0 71 90-201 327-397 (425)
170 TIGR02092 glgD glucose-1-phosp 98.5 4.9E-07 1.1E-11 84.5 9.2 78 77-197 277-354 (369)
171 PRK00844 glgC glucose-1-phosph 98.5 7.2E-07 1.6E-11 84.6 9.6 51 165-216 332-382 (407)
172 PRK02862 glgC glucose-1-phosph 98.4 1.6E-06 3.5E-11 82.8 11.3 30 75-106 311-340 (429)
173 KOG1322 GDP-mannose pyrophosph 98.4 6.2E-07 1.3E-11 80.7 6.6 98 85-221 259-356 (371)
174 KOG1460 GDP-mannose pyrophosph 98.4 1.7E-06 3.6E-11 77.0 9.1 105 75-220 291-397 (407)
175 PF14602 Hexapep_2: Hexapeptid 98.4 3.9E-07 8.5E-12 55.4 3.1 32 182-215 2-33 (34)
176 PF14602 Hexapep_2: Hexapeptid 98.3 1E-06 2.2E-11 53.6 3.4 33 164-197 1-33 (34)
177 COG0448 GlgC ADP-glucose pyrop 98.2 8.3E-06 1.8E-10 75.6 9.6 94 81-217 270-363 (393)
178 PF00132 Hexapep: Bacterial tr 98.1 1.9E-06 4.1E-11 52.8 1.9 34 182-215 2-35 (36)
179 KOG1322 GDP-mannose pyrophosph 98.1 4.9E-06 1.1E-10 75.1 5.0 56 165-221 289-344 (371)
180 PF00132 Hexapep: Bacterial tr 97.7 2.9E-05 6.3E-10 47.4 2.9 35 90-127 1-35 (36)
181 COG4801 Predicted acyltransfer 97.4 0.001 2.2E-08 57.4 8.9 68 167-235 53-121 (277)
182 COG4801 Predicted acyltransfer 97.0 0.0023 5.1E-08 55.2 6.5 45 165-209 57-102 (277)
183 PF07959 Fucokinase: L-fucokin 87.7 1.6 3.5E-05 41.6 6.7 40 164-204 284-323 (414)
184 PF07959 Fucokinase: L-fucokin 86.8 1.1 2.5E-05 42.7 5.1 42 172-214 275-316 (414)
185 PF04613 LpxD: UDP-3-O-[3-hydr 85.0 0.064 1.4E-06 38.0 -3.3 32 1-34 8-39 (72)
186 PF13720 Acetyltransf_11: Udp 84.4 3.6 7.8E-05 30.0 5.7 16 219-234 1-16 (83)
187 PF04519 Bactofilin: Polymer-f 69.2 19 0.00041 26.8 6.1 43 79-126 3-45 (101)
188 COG1664 CcmA Integral membrane 56.5 53 0.0012 26.6 6.8 49 75-128 20-68 (146)
189 PF04519 Bactofilin: Polymer-f 49.2 37 0.0008 25.2 4.5 26 165-190 31-56 (101)
190 PRK13412 fkp bifunctional fuco 47.0 24 0.00053 37.4 4.2 13 218-230 379-391 (974)
191 PRK13412 fkp bifunctional fuco 33.6 56 0.0012 34.8 4.4 35 163-197 335-370 (974)
No 1
>PLN02472 uncharacterized protein
Probab=100.00 E-value=3.8e-37 Score=270.47 Aligned_cols=246 Identities=85% Similarity=1.319 Sum_probs=217.5
Q ss_pred ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhccccccccccCCCCCCCCcccccccccccceeeecCCCCceeCCCcE
Q 039842 1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLGQWVPKVAVDAY 80 (284)
Q Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (284)
|++|+|+.+..++..... .+++.++..++.+.+ ...+...+.+|+|..++++..+....|.++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~ 67 (246)
T PLN02472 1 ATSLARIARRALTSTAAA--QLRRGFAAEAAAAAT-----------PITPSPDRVKWDYRGQRQIIPLGQWVPKVAVDAY 67 (246)
T ss_pred ChhHHHHHHHhhhhhhhh--hhcCCcchhhhcccC-----------CCCCcccccccCcCCcceEEecCCcCCccCCCCE
Confidence 788999988888766555 344444443333321 1345678899999999999999999999999999
Q ss_pred EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842 81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW 160 (284)
Q Consensus 81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
|.|++.+.+++.||+++.|+++++|+|+.+.++||++|.|+++|+|+.....+..
T Consensus 68 I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~------------------------- 122 (246)
T PLN02472 68 VAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTG------------------------- 122 (246)
T ss_pred ECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccC-------------------------
Confidence 9999999999999999999999999999889999999999999999865421111
Q ss_pred CCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842 161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240 (284)
Q Consensus 161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~ 240 (284)
.+.+++||++|.||++|+|++++||++|+||.+|+|.++++||++++|+++++|.++..+|++.++.|+||++++.+.++
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~~ 202 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTNE 202 (246)
T ss_pred CCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCHH
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCC
Q 039842 241 ETLEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLGITI 284 (284)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (284)
+...++...+.|.++.+.|.+.|.++...|.+.+++++++++.+
T Consensus 203 ~~~~l~~~a~~y~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (246)
T PLN02472 203 ETLEIPKLAVAINDLSQSHFSEFLPYSTAYLEVEKLKKSLGIAL 246 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999864
No 2
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=100.00 E-value=7.2e-34 Score=233.72 Aligned_cols=167 Identities=33% Similarity=0.581 Sum_probs=157.2
Q ss_pred cCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842 68 LGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ 147 (284)
Q Consensus 68 ~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~ 147 (284)
+....|.++++++|+|++.|.++|+||+++.|+++++|+||..++.||++|.|+++|+|+....
T Consensus 7 ~~~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~---------------- 70 (176)
T COG0663 7 YEGLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG---------------- 70 (176)
T ss_pred ccCCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC----------------
Confidence 3456789999999999999999999999999999999999999999999999999999997643
Q ss_pred ccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842 148 MSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA 227 (284)
Q Consensus 148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~ 227 (284)
.+++||++|+||++++||+|+|||+|+||.|++|.+|+.||++|+|++|++|.+++.+|+++++.
T Consensus 71 ---------------~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~ 135 (176)
T COG0663 71 ---------------YPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVV 135 (176)
T ss_pred ---------------CCeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEee
Confidence 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhcccc
Q 039842 228 GNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLP 265 (284)
Q Consensus 228 G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (284)
|.|+++++++.+++..+++...+.|.++.+.|...+++
T Consensus 136 G~Pak~~r~l~~~~~~~~~~~a~~Yv~~~~~~~~~~~~ 173 (176)
T COG0663 136 GSPAKVVRPLDDEELAWLRENAENYVKLADRYLAGLKE 173 (176)
T ss_pred cCcceeeecCChhHhhhhhHhHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999988766544
No 3
>PLN02296 carbonate dehydratase
Probab=99.97 E-value=2.4e-29 Score=223.85 Aligned_cols=186 Identities=38% Similarity=0.605 Sum_probs=165.8
Q ss_pred ccccceeeecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCccccc
Q 039842 59 YRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVG 138 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g 138 (284)
+..++.++.+....|.++++++|+|++.+.+++.||++|.|+++|+|.++.+.+.||++|.|+++|+|+........
T Consensus 39 ~~~~~~~~~~~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g--- 115 (269)
T PLN02296 39 LSRHRTLMNIFDKAPVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSG--- 115 (269)
T ss_pred HHHHHHHHhhcCCCCccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccC---
Confidence 45566667777888999999999999999999999999999999999988778999999999999999854321100
Q ss_pred ceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC
Q 039842 139 FVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR 218 (284)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~ 218 (284)
...+++||++|+||++|+|++++|||+|+||.+++|.++++|+++++|+++++|.+++
T Consensus 116 ----------------------~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~ 173 (269)
T PLN02296 116 ----------------------KVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNT 173 (269)
T ss_pred ----------------------CCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCC
Confidence 1235899999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCEEeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccchHH
Q 039842 219 RIPTGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTV 269 (284)
Q Consensus 219 ~I~~~~vv~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
.||+++++.|+||++++.+.+++..++...+..|.++.+.|...+.+..+.
T Consensus 174 ~I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~~~~~ 224 (269)
T PLN02296 174 RIPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHAAENAKSFDE 224 (269)
T ss_pred EeCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999997776665553
No 4
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.97 E-value=8.7e-29 Score=211.20 Aligned_cols=173 Identities=26% Similarity=0.421 Sum_probs=158.0
Q ss_pred eecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeec
Q 039842 66 IPLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLID 145 (284)
Q Consensus 66 ~~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~ 145 (284)
+.+....|.++++++|++++.|.+++.||++|.|+++++|+++.+.++||++|.|+++|+|+....
T Consensus 4 ~~~~~~~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~-------------- 69 (196)
T PRK13627 4 YAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD-------------- 69 (196)
T ss_pred cccCCCCCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC--------------
Confidence 345567788999999999999999999999999999999998877899999999999999975432
Q ss_pred ccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842 146 LQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL 225 (284)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v 225 (284)
.+++|++++.||+++.+++++||++|+||.+++|.++++||++++|+++++|.++..+|++++
T Consensus 70 -----------------~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~ 132 (196)
T PRK13627 70 -----------------TDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQL 132 (196)
T ss_pred -----------------CCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcE
Confidence 258999999999999999999999999999999999999999999999999998889999999
Q ss_pred EeccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccchHH
Q 039842 226 WAGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYSTV 269 (284)
Q Consensus 226 v~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
++|+||++++.+.+++..++...+..|.++.+.|.+.+.+...+
T Consensus 133 ~~G~Pa~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 176 (196)
T PRK13627 133 LMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPL 176 (196)
T ss_pred EEecCCEEeccCCHHHHHHHHhhHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999999999999997766654433
No 5
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.96 E-value=8.4e-29 Score=210.63 Aligned_cols=169 Identities=25% Similarity=0.432 Sum_probs=156.0
Q ss_pred ecCCCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc
Q 039842 67 PLGQWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL 146 (284)
Q Consensus 67 ~~~~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~ 146 (284)
.+....|.++++++|+|++.|.+++.||++|.|+++|+|.|+.++++||++|.|+++|+|+....
T Consensus 3 ~~~~~~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~--------------- 67 (192)
T TIGR02287 3 QIDGLTPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPG--------------- 67 (192)
T ss_pred CcCCcCCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCC---------------
Confidence 44567889999999999999999999999999999999998888899999999999999964321
Q ss_pred cccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842 147 QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv 226 (284)
.+++||+++.|+++++|++++||++|+||.+++|.++++||++++|+++++|.++..+|+++++
T Consensus 68 ----------------~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~ 131 (192)
T TIGR02287 68 ----------------QDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV 131 (192)
T ss_pred ----------------CCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence 2589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccc
Q 039842 227 AGNPARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPY 266 (284)
Q Consensus 227 ~G~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (284)
+|+|+++++.+..++..++...+..|.++.+.|.+.+.+.
T Consensus 132 ~G~Pak~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 171 (192)
T TIGR02287 132 VGSPAKVIRELSEQELAWKKQGTHEYQVLATRCKQTLHQC 171 (192)
T ss_pred EccCCEEeccCCHHHHHHHHHhHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999997765544
No 6
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.94 E-value=3.8e-25 Score=182.51 Aligned_cols=154 Identities=30% Similarity=0.508 Sum_probs=139.8
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
|.++++++|+++++|.+++.||++|.|+++++|.++.+++.||++|.|+++|+|+...
T Consensus 1 ~~i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~---------------------- 58 (155)
T cd04745 1 PVVDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFP---------------------- 58 (155)
T ss_pred CccCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecC----------------------
Confidence 3568899999999999999999999999999998776679999999999999996421
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~ 232 (284)
..+++||++++|++++.+.+++||++|+||.++.|.++++|+++++|+++++|.++..|+++++++|+|++
T Consensus 59 ---------~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~ 129 (155)
T cd04745 59 ---------GQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAK 129 (155)
T ss_pred ---------CCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCce
Confidence 13589999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred eeccCCHHHHhhhhhhHHHHHHHHH
Q 039842 233 FVRTLTHEETLEIPKLAVAINDLSK 257 (284)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (284)
.++.++++++++.......|..|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (155)
T cd04745 130 VIRELSDEEVAWKTRGTKEYQQLAA 154 (155)
T ss_pred EeccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999988888777777776653
No 7
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.93 E-value=1.6e-24 Score=178.61 Aligned_cols=153 Identities=37% Similarity=0.569 Sum_probs=141.1
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
|.+.++++|++.+.|.+++.||++|.|++++.|.++...++||++|.|+++|.|....
T Consensus 1 ~~~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~---------------------- 58 (154)
T cd04650 1 PRISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH---------------------- 58 (154)
T ss_pred CccCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC----------------------
Confidence 3578899999999999999999999999999998765679999999999999997531
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~ 232 (284)
..+++||+++.|+.++.+++++||++|+||.++.+.++++|++++++++++.|.++.+++++++++|+|++
T Consensus 59 ---------~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~ 129 (154)
T cd04650 59 ---------GYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAK 129 (154)
T ss_pred ---------CCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCce
Confidence 12589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCHHHHhhhhhhHHHHHHHH
Q 039842 233 FVRTLTHEETLEIPKLAVAINDLS 256 (284)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~ 256 (284)
+++.++++++.+++...+.|-++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ 153 (154)
T cd04650 130 VVRKLTEEEIEWIKKNAEEYVELA 153 (154)
T ss_pred EeccCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999888887654
No 8
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.92 E-value=8.2e-24 Score=174.09 Aligned_cols=151 Identities=42% Similarity=0.717 Sum_probs=141.0
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
++++++|+|+++|.+++.||+++.|++++.|.++..+++||++|.|+++|+|.....
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~----------------------- 58 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG----------------------- 58 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC-----------------------
Confidence 678999999999999999999999999999998777899999999999999975422
Q ss_pred ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~ 234 (284)
.+++||+++.|+.+|.+.+++||++++|+.++.|.++++|+++|+|+++++|.++..+++++++.|.|+++.
T Consensus 59 --------~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~ 130 (153)
T cd04645 59 --------YPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVV 130 (153)
T ss_pred --------CCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhc
Confidence 248999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHhhhhhhHHHHHHHH
Q 039842 235 RTLTHEETLEIPKLAVAINDLS 256 (284)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~ 256 (284)
++++.++..++++....|.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~ 152 (153)
T cd04645 131 RELTDEEIAELRESAEHYVELA 152 (153)
T ss_pred ccCCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999888875
No 9
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.92 E-value=1.5e-24 Score=194.37 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=30.8
Q ss_pred ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhcc
Q 039842 1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATAT 35 (284)
Q Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (284)
||+|.++...+++|+.++ +|+..+.++.|+++.
T Consensus 28 va~l~~a~~~~i~f~~~~--ky~~~l~~s~Agavi 60 (338)
T COG1044 28 VAPLDEAQPGDISFLANP--KYRKELKTSRAGAVI 60 (338)
T ss_pred cchhhhcCcccceeecCh--hhhhhcccCcccEEE
Confidence 689999999999999999 999999999999883
No 10
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.92 E-value=7.6e-24 Score=176.29 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=121.0
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (284)
+|+++++|++++.|.+++.||+++.|++++.|..+.++++||++|.|+++|+|.........
T Consensus 1 ~~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~------------------ 62 (164)
T cd04646 1 KIAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA------------------ 62 (164)
T ss_pred CcCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC------------------
Confidence 37889999999999999999999999999999755567999999999999999765331110
Q ss_pred CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCcee
Q 039842 154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARF 233 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~ 233 (284)
...++.||+++.|..++.+.+++|||+|+||.+++|.++++||++|+|+++++|.++..+|+++++.|+|+..
T Consensus 63 -------~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~ 135 (164)
T cd04646 63 -------EPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLR 135 (164)
T ss_pred -------CCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEE
Confidence 2245899999999999999999999999999999999999999999999999999888999999999999865
Q ss_pred e
Q 039842 234 V 234 (284)
Q Consensus 234 ~ 234 (284)
.
T Consensus 136 ~ 136 (164)
T cd04646 136 R 136 (164)
T ss_pred E
Confidence 5
No 11
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.91 E-value=2e-24 Score=197.94 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=48.1
Q ss_pred ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT 236 (284)
Q Consensus 181 ~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~ 236 (284)
+++||++|+||.++.|.++++||++++|+++++|. +++|++.++.|+||+..++
T Consensus 253 ~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~--~~v~~~~~~~G~pa~~~~~ 306 (324)
T TIGR01853 253 STKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVT--KSIPPPGVYGGIPARPNKE 306 (324)
T ss_pred ccEECCCeEEccccccccCCEECCCCEEccCCEeC--CcCCCCcEEEccCccHHHH
Confidence 47888888999999999999999999999999999 8899999999999986554
No 12
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.89 E-value=5.4e-22 Score=164.70 Aligned_cols=155 Identities=21% Similarity=0.375 Sum_probs=133.6
Q ss_pred eCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 75 VAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 75 i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
...++.|++.+.|.+ ++.||+++.|++++.|.++..+++||++|.|+++|+|++..+....
T Consensus 4 ~~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~----------------- 66 (161)
T cd03359 4 TASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSK----------------- 66 (161)
T ss_pred CcCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCC-----------------
Confidence 456778899999855 9999999999999999987778999999999999999865431110
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~ 232 (284)
.....+++||++++|++++++..++||++++||.++.|++++.|+++++|+++++|.++..+++++++.|+|++
T Consensus 67 ------~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~ 140 (161)
T cd03359 67 ------GVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPAR 140 (161)
T ss_pred ------CccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccE
Confidence 00223589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCHHHHhhhhhhHHHH
Q 039842 233 FVRTLTHEETLEIPKLAVAI 252 (284)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (284)
+++++++.+.+++.....+|
T Consensus 141 ~i~~~~~~~~~~~~~~~~~~ 160 (161)
T cd03359 141 FIGELPECTQELMEEETKEY 160 (161)
T ss_pred EEEecchhhhHHHHhhHhhc
Confidence 99999998877666555443
No 13
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.89 E-value=2.9e-22 Score=185.45 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=33.1
Q ss_pred cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC-CCEEeccCceee
Q 039842 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT-GELWAGNPARFV 234 (284)
Q Consensus 182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~-~~vv~G~pa~~~ 234 (284)
++||++|+||.++.|.++++||++++|++++.|. .++|+ +.++.|+|++..
T Consensus 262 ~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~--~~i~~~~~~~~G~pa~~~ 313 (343)
T PRK00892 262 TKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVT--KSIPEPGEYSSGIPAQPN 313 (343)
T ss_pred CEECCceEECCCCEEcCCCEECCCCEEecCCeeC--CccCCCCeEEEeecCchH
Confidence 5666666666666666666666666666666666 56666 566666666643
No 14
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.88 E-value=1.2e-21 Score=174.16 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=102.2
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCCC--ccccccee
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNSP--YRFVGFVS 141 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~g~~~ 141 (284)
..|++++.|++++.|.+++.||++|.|++++.|.+. ...++||++|.|+++|+|+...... ...+|.++
T Consensus 30 v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~ 109 (254)
T cd03351 30 VEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNN 109 (254)
T ss_pred CEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCC
Confidence 356666666677777777777777777777777421 1247777777777777776543321 22333333
Q ss_pred eeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842 142 LLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI 220 (284)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I 220 (284)
.+.... ....+++||++|.|+.++.+ ++++|||+|+||+++.|.++++||++++|+++++|. .+|
T Consensus 110 ~I~~~~------------~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~--~~i 175 (254)
T cd03351 110 LLMAYV------------HVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVV--QDV 175 (254)
T ss_pred EECCCC------------EECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEe--eec
Confidence 332211 11123555555555555555 469999999999999999999999999999999999 779
Q ss_pred CCCCEEeccCceee
Q 039842 221 PTGELWAGNPARFV 234 (284)
Q Consensus 221 ~~~~vv~G~pa~~~ 234 (284)
+++++++|+|++..
T Consensus 176 ~~~~~~~G~~~~~~ 189 (254)
T cd03351 176 PPYVIAAGNRARLR 189 (254)
T ss_pred CCCeEEEccCCeEe
Confidence 99999999999754
No 15
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.88 E-value=9.5e-22 Score=175.50 Aligned_cols=147 Identities=18% Similarity=0.279 Sum_probs=96.8
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCC--CCcccccceee
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWN--SPYRFVGFVSL 142 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~--~~~~~~g~~~~ 142 (284)
.+++++.|++++.|.++++||++|.|++++.|.++ ...+.||++|.|+++|+|+.... .....+|.+++
T Consensus 34 ~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~ 113 (262)
T PRK05289 34 VIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNL 113 (262)
T ss_pred EECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceE
Confidence 45555555555555556666666666666666321 11366666666666666654431 11123344333
Q ss_pred eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842 143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
++... +..++++||+++.++.++.+ ..++|||+|+||.++.|.++++||++++|+++++|. ++||
T Consensus 114 I~~~~------------~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~--~di~ 179 (262)
T PRK05289 114 LMAYV------------HVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVS--QDVP 179 (262)
T ss_pred ECCCC------------EECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeeccee--ccCC
Confidence 33221 11224555555555555554 358999999999999999999999999999999999 8999
Q ss_pred CCCEEeccCceee
Q 039842 222 TGELWAGNPARFV 234 (284)
Q Consensus 222 ~~~vv~G~pa~~~ 234 (284)
++++++|+|++..
T Consensus 180 ~~~~~~G~pa~~~ 192 (262)
T PRK05289 180 PYVLAEGNPARLR 192 (262)
T ss_pred CCeEEecccCeEe
Confidence 9999999999985
No 16
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.88 E-value=2.1e-21 Score=172.32 Aligned_cols=147 Identities=16% Similarity=0.308 Sum_probs=106.8
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCC-Ccccccceee
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNS-PYRFVGFVSL 142 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~-~~~~~g~~~~ 142 (284)
..+++++.|++++.|.+++.||+++.|++++.|.++ ...++||++|.|+++|+|+.+... ....+|..++
T Consensus 30 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~ 109 (255)
T PRK12461 30 VEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNL 109 (255)
T ss_pred CEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEEEcccce
Confidence 345666666666666667777777777777776421 124677777777777777755421 2234555555
Q ss_pred eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842 143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
++... +..+++.||++|+|+.++.+ ..++|||+|+||.++.|.++++||++++|+++++|. ++||
T Consensus 110 i~~~~------------~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~--~dVp 175 (255)
T PRK12461 110 LMAYS------------HVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRIS--KDVP 175 (255)
T ss_pred eccCc------------EECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEe--ccCC
Confidence 54331 12235666777777766666 469999999999999999999999999999999999 8899
Q ss_pred CCCEEeccCcee
Q 039842 222 TGELWAGNPARF 233 (284)
Q Consensus 222 ~~~vv~G~pa~~ 233 (284)
+++++.|+||+.
T Consensus 176 p~~i~~G~pa~~ 187 (255)
T PRK12461 176 PYCMMAGHPTNV 187 (255)
T ss_pred CCeEEecCcceE
Confidence 999999999995
No 17
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.88 E-value=2.5e-21 Score=172.12 Aligned_cols=149 Identities=19% Similarity=0.303 Sum_probs=116.0
Q ss_pred CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCCC--cccccce
Q 039842 72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNSP--YRFVGFV 140 (284)
Q Consensus 72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~~--~~~~g~~ 140 (284)
...+++++.|++++.|.+++.||++|.|+++++|.++ ...++||++|.|+++|+|+...... ...+|..
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 4567888888888888888999999999999998531 1358899999999999998664321 2334444
Q ss_pred eeeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842 141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR 219 (284)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~ 219 (284)
+.+.... ...++++||+++.|+.++.+ ++++|||+|+||+++.|.++++||++++|+++++|. .+
T Consensus 108 ~~I~~~~------------~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~--~~ 173 (254)
T TIGR01852 108 NLLMAYS------------HIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVS--KD 173 (254)
T ss_pred CEECCCC------------EEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEe--ee
Confidence 4442221 12234677777777777776 569999999999999999999999999999999999 78
Q ss_pred eCCCCEEeccCceee
Q 039842 220 IPTGELWAGNPARFV 234 (284)
Q Consensus 220 I~~~~vv~G~pa~~~ 234 (284)
||++++++|+|++..
T Consensus 174 i~~~~~~~G~pa~~~ 188 (254)
T TIGR01852 174 VPPYGLVEGNRARLR 188 (254)
T ss_pred cCCCcEEecCcCeec
Confidence 999999999999973
No 18
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.86 E-value=5e-21 Score=167.53 Aligned_cols=127 Identities=24% Similarity=0.465 Sum_probs=116.8
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
++.++.|++++.+.+++.||+++.|++++.|.++ ++||++|.|++++.|..
T Consensus 83 vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~I~~-------------------------- 133 (231)
T TIGR03532 83 KNINARIEPGAIIRDQVIIGDNAVIMMGAVINIG---AEIGEGTMIDMNAVLGG-------------------------- 133 (231)
T ss_pred cccccEECCCCEEeCCeEECCCCEEecCcccCCC---eEECCCCEEccccccCC--------------------------
Confidence 5788899999999999999999999999999654 89999999999998742
Q ss_pred ccccccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL 225 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v 225 (284)
+++||++|.||.++.+. +++||++|+||++++|.++++||++++|+++++|. .++|++++
T Consensus 134 ---------~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~--~di~~~~v 202 (231)
T TIGR03532 134 ---------RATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVT--EDVPPNTV 202 (231)
T ss_pred ---------CcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc--cccCCCcE
Confidence 48899999999999996 48999999999999999999999999999999999 79999999
Q ss_pred EeccCceeeccCCHHH
Q 039842 226 WAGNPARFVRTLTHEE 241 (284)
Q Consensus 226 v~G~pa~~~~~~~~~~ 241 (284)
++|+||++++.+++++
T Consensus 203 v~G~PA~~i~~~~~~~ 218 (231)
T TIGR03532 203 VAGVPAKVIKQVDEKT 218 (231)
T ss_pred EEecCCEEeccCChhH
Confidence 9999999999988854
No 19
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.85 E-value=1.6e-20 Score=160.91 Aligned_cols=137 Identities=19% Similarity=0.289 Sum_probs=112.1
Q ss_pred CCCCceeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc
Q 039842 69 GQWVPKVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL 146 (284)
Q Consensus 69 ~~~~~~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~ 146 (284)
...++.++++++|.+++.+ +.+++||++++|+.++.|. +.+.++||++|.|+++|.|.+..+...
T Consensus 52 ~~~~~~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~-d~~~I~IGd~v~Ig~~v~I~~~~h~~~------------ 118 (203)
T PRK09527 52 KEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHPVH------------ 118 (203)
T ss_pred HHhhhhcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEe-cCCCEEECCCCEECCCCEEEeCCCCCC------------
Confidence 3445678999999999997 5799999999999999996 556799999999999999986544110
Q ss_pred cccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842 147 QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv 226 (284)
..+.. ......++++|||+||||++++|.++++||++++|+++++|. +++|+++++
T Consensus 119 ------------------~~~r~----~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~--kdvp~~~v~ 174 (203)
T PRK09527 119 ------------------HELRK----NGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT--KDIPPNVVA 174 (203)
T ss_pred ------------------hhhcc----ccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc--ccCCCCcEE
Confidence 00000 001123678999999999999999999999999999999999 789999999
Q ss_pred eccCceeeccCCHHHH
Q 039842 227 AGNPARFVRTLTHEET 242 (284)
Q Consensus 227 ~G~pa~~~~~~~~~~~ 242 (284)
+|+||++++++.+++.
T Consensus 175 ~G~PAk~i~~~~~~~~ 190 (203)
T PRK09527 175 AGVPCRVIREINDRDK 190 (203)
T ss_pred EeeCCEEeccCCHHHH
Confidence 9999999999875553
No 20
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.84 E-value=3e-19 Score=149.12 Aligned_cols=160 Identities=23% Similarity=0.361 Sum_probs=121.2
Q ss_pred CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCC-CcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842 72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL-NKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC 150 (284)
Q Consensus 72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~-~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~ 150 (284)
.|.++++++|+|++.|.+++.||++|+|++++.|.++. ..+.||++|.|++++.|+....
T Consensus 2 ~~~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~------------------- 62 (167)
T cd00710 2 EPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEG------------------- 62 (167)
T ss_pred CCEeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCC-------------------
Confidence 36799999999999999999999999999999997542 3699999999999999975321
Q ss_pred CCCCccccccCCcceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842 151 PRSNSLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN 229 (284)
Q Consensus 151 ~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~ 229 (284)
.++.||+++.|++++.|.+ ++||++|+||.++.|. ++.||++|+|++++.|. +..+++++++. .
T Consensus 63 ------------~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~-~ 127 (167)
T cd00710 63 ------------YSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVP-A 127 (167)
T ss_pred ------------CCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEEC-C
Confidence 2589999999999999976 9999999999999996 79999999999999985 56788887753 3
Q ss_pred CceeeccCCHHHHhhhhhhHHHHHHHHHHHHhccccchH
Q 039842 230 PARFVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYST 268 (284)
Q Consensus 230 pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (284)
.+.+....+. ..++.+.+..+++.+..++-+.++.+
T Consensus 128 ~~~v~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (167)
T cd00710 128 GAVITSQTQA---DALPDVTDSAREFNEKVITVNNELAE 163 (167)
T ss_pred CCEEcCCCcc---cccccCChhHHHHHHHHhhhhhhhhh
Confidence 3333333322 22333333334444444444444443
No 21
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.83 E-value=4.6e-20 Score=157.47 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=95.6
Q ss_pred CceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC---------------------------CCcEEECCCCEECCCC
Q 039842 72 VPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD---------------------------LNKITVGFCSNVQERC 124 (284)
Q Consensus 72 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~---------------------------~~~v~IG~~~~I~~~~ 124 (284)
.+.+++++.|+|.|.|+++|+||+++.|++.++|.|. ...+.||++|.|.+++
T Consensus 15 gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~v 94 (260)
T COG1043 15 GAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFV 94 (260)
T ss_pred CCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEE
Confidence 3455566666666666666666666666666655543 1124555555555555
Q ss_pred EEecCCCC--CcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCE
Q 039842 125 VLHAAWNS--PYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSM 201 (284)
Q Consensus 125 ~I~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~ 201 (284)
+|+.++.. ....+|..++++... +..++++||++|.+..|+.+. .+.|||++.||..+-|...|+
T Consensus 95 Ti~~GT~~g~g~T~IGdnnl~May~------------HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr 162 (260)
T COG1043 95 TIHRGTVQGGGVTRIGDNNLIMAYA------------HVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR 162 (260)
T ss_pred EEeccccCCceeEEECCCCEEEEee------------eeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence 55544432 223444444444331 223445555555555555553 477888888888888888888
Q ss_pred ECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842 202 VETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234 (284)
Q Consensus 202 Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~ 234 (284)
||++|+||..|.|. .+|||++++.|+|++..
T Consensus 163 IG~~amiGg~S~v~--~DVpPy~~~~Gn~a~l~ 193 (260)
T COG1043 163 IGAHAMIGGLSAVS--QDVPPYVIASGNHARLR 193 (260)
T ss_pred Ecchheeccccccc--cCCCCeEEecCCccccc
Confidence 99999999999999 99999999999999864
No 22
>PRK10502 putative acyl transferase; Provisional
Probab=99.82 E-value=8.7e-20 Score=154.40 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=108.6
Q ss_pred CCCCceeCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc
Q 039842 69 GQWVPKVAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL 146 (284)
Q Consensus 69 ~~~~~~i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~ 146 (284)
+.+...+++++.|++++.|.. ++.||+++.|++++.|. +...++||++|.|++++.|....+...+
T Consensus 48 r~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~-~~~~v~IG~~~~I~~~~~I~~~~h~~~~----------- 115 (182)
T PRK10502 48 RLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLY-NLGEITIGAHCVISQKSYLCTGSHDYSD----------- 115 (182)
T ss_pred HHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceec-ccCceEECCCcEECCCeEEECCCCCCcC-----------
Confidence 344568999999999999854 79999999999999996 4567999999999999999876552211
Q ss_pred cccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842 147 QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv 226 (284)
.. ......+++|||+||||++|+|.+|++||++++|+++++|. +++|+++++
T Consensus 116 ---------------------~~-----~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~--~~v~~~~v~ 167 (182)
T PRK10502 116 ---------------------PH-----FDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVF--KSLPANTIC 167 (182)
T ss_pred ---------------------CC-----cccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEe--cccCCCcEE
Confidence 00 01123567999999999999999999999999999999999 899999999
Q ss_pred eccCceeeccCC
Q 039842 227 AGNPARFVRTLT 238 (284)
Q Consensus 227 ~G~pa~~~~~~~ 238 (284)
+|+||++++++.
T Consensus 168 ~G~Pa~~ik~r~ 179 (182)
T PRK10502 168 RGNPAVPIRPRV 179 (182)
T ss_pred ECCcceEecccc
Confidence 999999988753
No 23
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.82 E-value=4.1e-19 Score=152.73 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=110.0
Q ss_pred CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC--------------ccc
Q 039842 71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP--------------YRF 136 (284)
Q Consensus 71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~--------------~~~ 136 (284)
....++++++|++++.|.++++||+++.|++++.|..+ ++||++|.|+++++|+...... ...
T Consensus 18 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~ 94 (205)
T cd03352 18 EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEG---CIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVI 94 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC---CEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEE
Confidence 34568888888888888889999999999999998755 7899999999999886432110 111
Q ss_pred ccceeeeecccccC----------CCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCC
Q 039842 137 VGFVSLLIDLQMSC----------PRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETH 205 (284)
Q Consensus 137 ~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~ 205 (284)
+|....+....... .............+++||+++.|+.++.+ ++++||++|+||++++|.++++||++
T Consensus 95 Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~ 174 (205)
T cd03352 95 IGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDG 174 (205)
T ss_pred ECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCC
Confidence 12221111110000 00000000111123344444444444444 57999999999999999999999999
Q ss_pred CEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842 206 AILEAGSVLPPGRRIPTGELWAGNPARFVRT 236 (284)
Q Consensus 206 ~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~ 236 (284)
++|+++++|. .++|++.++.|+||+++++
T Consensus 175 ~~i~~~s~v~--~~~~~~~~~~G~pa~~~~~ 203 (205)
T cd03352 175 VVIGAGSGVT--SIVPPGEYVSGTPAQPHRE 203 (205)
T ss_pred CEEcCCCEEe--eECCCCCEEEeecCchhhh
Confidence 9999999999 8999999999999997665
No 24
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.82 E-value=2.5e-19 Score=154.09 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=88.5
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (284)
.+++++.|++++.|. ++.||++++|++++.|. + +.||++|.|++++.|....+.... ..
T Consensus 21 ~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~-~---~~IG~~~~I~~~v~I~~~~h~~~~-~s--------------- 79 (204)
T TIGR03308 21 KLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-Y---TTIGKFCSIAAMVRINATNHPMER-PT--------------- 79 (204)
T ss_pred EeCCCcEECCCcEEe-CCEECCCCEECCCcEEe-e---eEECCCCEECCCCEECCCCCCCCc-cc---------------
Confidence 455666666666654 55666666666666664 3 567777777777776554331110 00
Q ss_pred CccccccCCcceEEC----CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842 154 NSLYIAWLPAETSIE----RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN 229 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig----~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~ 229 (284)
..++.+.. .... ++...-..-...+++||++|+||.+++|.++++||++++|+++++|. .+||++++++|+
T Consensus 80 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~--~~i~~~~~~~G~ 154 (204)
T TIGR03308 80 -LHHFTYRA--AMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVT--KDVAPYTIVAGV 154 (204)
T ss_pred -cccccccc--ccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC--CCCCCCcEEEec
Confidence 00000000 0000 00000001122578999999999999999999999999999999999 789999999999
Q ss_pred CceeeccCC
Q 039842 230 PARFVRTLT 238 (284)
Q Consensus 230 pa~~~~~~~ 238 (284)
|++.++.+.
T Consensus 155 Pa~~~~~~~ 163 (204)
T TIGR03308 155 PAKLIRRRF 163 (204)
T ss_pred CchHhhhcC
Confidence 999987643
No 25
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.81 E-value=9e-19 Score=162.17 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=84.6
Q ss_pred ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHHH
Q 039842 164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEET 242 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~~ 242 (284)
+++||++|.|+.+++| ++++||++|+|++++.|..+++||++|+|+.++.|.++..|++++++++. +.+.+++++...
T Consensus 225 ~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~-s~v~~~i~~~~~ 303 (343)
T PRK00892 225 DTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAM-SGVTKSIPEPGE 303 (343)
T ss_pred cceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecC-CeeCCccCCCCe
Confidence 4677777777777777 67999999999999999999999999999999999999999999998877 666777776322
Q ss_pred hhhhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 039842 243 LEIPKLAVAINDLSKSHFSEFLPYSTVYLEVEKFKKSLG 281 (284)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (284)
.+....+...++..+ ....++.+.+++.++++++|++.
T Consensus 304 ~~~G~pa~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 341 (343)
T PRK00892 304 YSSGIPAQPNKEWLR-TAARLRRLDELRKRLKALEKKVE 341 (343)
T ss_pred EEEeecCchHHHHHH-HHHHHhhhHHHHHHHHHHHHHhh
Confidence 222222222222222 22345667777777777777653
No 26
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.80 E-value=9.9e-19 Score=147.81 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=102.0
Q ss_pred CCcEEcCCcE--EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 77 VDAYVAPNVV--LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 77 ~~~~I~~~a~--i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
++++|.|++. ++.++.||++++|+.+++|. +.+.++||++|.|+++|.|.+..|....
T Consensus 58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~------------------- 117 (183)
T PRK10092 58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDP------------------- 117 (183)
T ss_pred CCEEEeCCEEEeecCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCCh-------------------
Confidence 4688888885 47899999999999999995 7788999999999999999876552211
Q ss_pred ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~ 234 (284)
.....+..+ -++++|||+||||++++|.++++||++|+|+++++|. ++||++++++|+||+++
T Consensus 118 ----------~~~~~~~~~-----~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~--~di~~~~i~~G~PAr~i 180 (183)
T PRK10092 118 ----------VARNSGAEL-----GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT--KDVPDNVVVGGNPARII 180 (183)
T ss_pred ----------HHcccccee-----cCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEc--cccCCCcEEEecCcEEe
Confidence 111111111 1567999999999999999999999999999999999 78999999999999998
Q ss_pred cc
Q 039842 235 RT 236 (284)
Q Consensus 235 ~~ 236 (284)
+.
T Consensus 181 ~~ 182 (183)
T PRK10092 181 KK 182 (183)
T ss_pred ec
Confidence 75
No 27
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.80 E-value=1.6e-18 Score=147.91 Aligned_cols=140 Identities=17% Similarity=0.250 Sum_probs=108.0
Q ss_pred CceeCCCcEEcCCcEE----ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc
Q 039842 72 VPKVAVDAYVAPNVVL----AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ 147 (284)
Q Consensus 72 ~~~i~~~~~I~~~a~i----~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~ 147 (284)
.-.+++++++..++++ .+.+.||+++.|++++.|. ....++||++|.|+++|.|....+....
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~-~~~~v~IG~~v~Ig~~v~I~~~~hg~~~------------ 109 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIA-CIESITIGRDTLIASKVFITDHNHGSFK------------ 109 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEc-cCceEEECCCCEECCCeEEECCCCcccc------------
Confidence 3467888889998887 4588999999999999985 4456999999999999999765442111
Q ss_pred ccCCCCCccccccCCcceEECCCCEEC---CCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842 148 MSCPRSNSLYIAWLPAETSIERFVTIG---AYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE 224 (284)
Q Consensus 148 ~~~~~~~~~~~~~~~~~v~Ig~~v~Ig---~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~ 224 (284)
......+..+. ......+++|||+|+||.+++|.++++||++|+|+++++|. .++|+++
T Consensus 110 ----------------~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~--~~i~~~~ 171 (192)
T PRK09677 110 ----------------HSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVT--KSIPENT 171 (192)
T ss_pred ----------------ccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEEC--cccCCCc
Confidence 00000111111 11234678999999999999999999999999999999999 6899999
Q ss_pred EEeccCceeeccCCHHHH
Q 039842 225 LWAGNPARFVRTLTHEET 242 (284)
Q Consensus 225 vv~G~pa~~~~~~~~~~~ 242 (284)
+++|+||++++++..+..
T Consensus 172 ~~~G~Pa~~ik~~~~~~~ 189 (192)
T PRK09677 172 VIAGNPAKIIKKYNHETK 189 (192)
T ss_pred EEEecCCEEEeccCcccc
Confidence 999999999999877543
No 28
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.79 E-value=1.6e-18 Score=155.66 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=74.3
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcc-cccceeeeecccccCC
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYR-FVGFVSLLIDLQMSCP 151 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~-~~g~~~~~~~~~~~~~ 151 (284)
..|++++.|++++.|++++.||++|+|++++.|+.+ +.||++|.|+++++|+.+...... ..|
T Consensus 130 v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~---~~IG~~v~I~~GavIG~dgFg~a~~~~g------------- 193 (338)
T COG1044 130 VVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHN---VVIGNNVIIHSGAVIGADGFGYAGTAIG------------- 193 (338)
T ss_pred CEECCCcEECCCCEECCCcEECCCcEEcCCCEEecC---cEECCceEECCCCEEccCccccccccCC-------------
Confidence 345555555555555556666666666666666533 667777777777777655432111 111
Q ss_pred CCCccccccCCcceEECCCCEECCCceee-----------------------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 152 RSNSLYIAWLPAETSIERFVTIGAYCSLR-----------------------SCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-----------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
.+...+.++++||++|.||+|++|. +|+||++|.|.+++.|.+.+.||++|+|
T Consensus 194 ----~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~i 269 (338)
T COG1044 194 ----WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVII 269 (338)
T ss_pred ----ceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEE
Confidence 1222344568888888888888872 2333333333333344444555555555
Q ss_pred cCCCeeCCCCeeCCCCEEec
Q 039842 209 EAGSVLPPGRRIPTGELWAG 228 (284)
Q Consensus 209 ~a~s~V~~~~~I~~~~vv~G 228 (284)
+..+.|..+..|.+++.+.+
T Consensus 270 gg~vgI~gh~~IgD~~~I~~ 289 (338)
T COG1044 270 GGQVGIAGHLEIGDGVTIGA 289 (338)
T ss_pred CcceeecCceEEcCCCEEec
Confidence 55555555555555555443
No 29
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.78 E-value=5.6e-18 Score=132.97 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=100.4
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
+++++.|++++.|.+++.||++|.|++++.|..+ ++||++|.|++++.+.....
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~----------------------- 54 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEG---VTIEDDVFIGPNVVFTNDLY----------------------- 54 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCC---eEECCCcEEcCCeEEecCCC-----------------------
Confidence 4678899999999999999999999999999544 88999999999998854211
Q ss_pred ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~ 234 (284)
.+..+..++.+.+++||++|+||.++.+.+++.|++++.|++++.+. .++|+++++.|+||+++
T Consensus 55 --------------~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~--~~i~~~~~~~G~pa~~~ 118 (119)
T cd03358 55 --------------PRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVT--KDVPPYALVVGNPARII 118 (119)
T ss_pred --------------CccccccccccCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEe--CcCCCCeEEecCcceec
Confidence 12222336678999999999999999999999999999999999999 67999999999999875
No 30
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.77 E-value=1.4e-17 Score=148.15 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=123.5
Q ss_pred CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-------Ccccccceeee
Q 039842 71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-------PYRFVGFVSLL 143 (284)
Q Consensus 71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~g~~~~~ 143 (284)
+...+++++.|+|++.|.+++.||+++.|++++.|.++ ++||++|.|+++++|+..... ....+|.++.+
T Consensus 9 ~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 85 (254)
T TIGR01852 9 PGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGH---TTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTI 85 (254)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeee---EEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEE
Confidence 34578889999999999999999999999999999766 999999999999999754221 12345555555
Q ss_pred ecccccCCCCCccccccCC-cceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842 144 IDLQMSCPRSNSLYIAWLP-AETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~-~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
.+......-. ... .+++||+++.|++++.| ++++||++|+|+.++.|.++++||++|+|++++.|.++..|+
T Consensus 86 ~~~~~I~~~~------~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig 159 (254)
T TIGR01852 86 REFVTINRGT------ASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIG 159 (254)
T ss_pred CCCCEECCcc------cCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEEC
Confidence 4432211110 011 36899999999999999 789999999999999999999999999999999999999999
Q ss_pred CCCEEeccCceeeccCC
Q 039842 222 TGELWAGNPARFVRTLT 238 (284)
Q Consensus 222 ~~~vv~G~pa~~~~~~~ 238 (284)
+++++.+. +.+.+.++
T Consensus 160 ~~~~Ig~~-s~V~~~i~ 175 (254)
T TIGR01852 160 RYAMIGGL-SAVSKDVP 175 (254)
T ss_pred CCCEEeee-eeEeeecC
Confidence 99987654 44444444
No 31
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.77 E-value=5.6e-18 Score=141.69 Aligned_cols=127 Identities=21% Similarity=0.285 Sum_probs=103.0
Q ss_pred CCceeCCCcEEcCCcEE--ecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842 71 WVPKVAVDAYVAPNVVL--AGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM 148 (284)
Q Consensus 71 ~~~~i~~~~~I~~~a~i--~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~ 148 (284)
.+..++++++|.+++.+ +.++.||++++|++++.|. +...++||++|.|+++|.|.+..+....
T Consensus 41 ~~~~~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~------------- 106 (169)
T cd03357 41 LFGSVGENVYIEPPFHCDYGYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDP------------- 106 (169)
T ss_pred HhcccCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCCh-------------
Confidence 44567888999988775 5689999999999999996 5567999999999999999876542111
Q ss_pred cCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEec
Q 039842 149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAG 228 (284)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G 228 (284)
.....+. ...++++|||+||||.+++|.++++||++|+|+++++|. .+||++++++|
T Consensus 107 ----------------~~~~~~~-----~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~--~~vp~~~vv~G 163 (169)
T cd03357 107 ----------------EERNRGL-----EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVT--KDIPANVVAAG 163 (169)
T ss_pred ----------------hHccccc-----eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEc--cccCCCcEEEc
Confidence 0000111 123578999999999999999999999999999999999 68999999999
Q ss_pred cCceee
Q 039842 229 NPARFV 234 (284)
Q Consensus 229 ~pa~~~ 234 (284)
+||+++
T Consensus 164 ~PAkvi 169 (169)
T cd03357 164 NPARVI 169 (169)
T ss_pred cccEEC
Confidence 999864
No 32
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.76 E-value=4.1e-18 Score=134.19 Aligned_cols=163 Identities=23% Similarity=0.348 Sum_probs=134.7
Q ss_pred eCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 75 VAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 75 i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
-+.+..+.....+-+ |+.+...+.|.+++.|+||...+.+|.+|+++.+++|.+.-.
T Consensus 16 TasGNKVsr~~vlcGsQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K--------------------- 74 (184)
T KOG3121|consen 16 TASGNKVSRKHVLCGSQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMK--------------------- 74 (184)
T ss_pred hccCCcccceeEeeccceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchH---------------------
Confidence 344455555555533 788888999999999999999999999999999999975422
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~ 232 (284)
.++....++ ++.||++|+|++.|++...+||.++.+|.+++|+.+|++.|.|.|-+++++++.+.+|+++.+.|+|+.
T Consensus 75 ~FSKg~aff--p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~ 152 (184)
T KOG3121|consen 75 IFSKGPAFF--PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQ 152 (184)
T ss_pred HhcCCceee--eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCce
Confidence 233333444 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCHHHHhhhhhhHHHHHHHHHHHHhccccch
Q 039842 233 FVRTLTHEETLEIPKLAVAINDLSKSHFSEFLPYS 267 (284)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (284)
+....+.-.+ ....+..+.|+++|.+..
T Consensus 153 ~~G~~P~ctq-------~lMi~~tksyY~~Fvp~~ 180 (184)
T KOG3121|consen 153 VVGTEPRCTQ-------NLMIEATKSYYDNFVPKQ 180 (184)
T ss_pred eeccCchhhH-------HHHHHHHHHHHHhcCccc
Confidence 9887766443 344566777888876643
No 33
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.75 E-value=2e-17 Score=146.81 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=121.2
Q ss_pred CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC-------cccccceeee
Q 039842 71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP-------YRFVGFVSLL 143 (284)
Q Consensus 71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~-------~~~~g~~~~~ 143 (284)
+.+.+++++.|+|++.|+++++||++|.|+++++|.++ +.||++|.|+++++|+...++. ...+|.++.+
T Consensus 10 ~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I 86 (255)
T PRK12461 10 PSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGP---TRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVI 86 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCC---CEECCCCEEccCcEeCCCCccccccCccceeEECCceEE
Confidence 44568888899999999999999999999999999866 9999999999999998644321 2235555555
Q ss_pred ecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC
Q 039842 144 IDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT 222 (284)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~ 222 (284)
.+......- ++....++||+++.|.+++.| ++|.||++|+|+.++.+..+++||++++|++++.|.+++.|++
T Consensus 87 ~e~vtI~~g------t~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~ 160 (255)
T PRK12461 87 REGVTIHRG------TKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGA 160 (255)
T ss_pred CCccEEecC------cccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECC
Confidence 443221110 012234777777777777777 6789999999999999999999999999999999999999999
Q ss_pred CCEEeccCceeeccCCH
Q 039842 223 GELWAGNPARFVRTLTH 239 (284)
Q Consensus 223 ~~vv~G~pa~~~~~~~~ 239 (284)
++++.+. +.+.+++++
T Consensus 161 ~a~Vg~g-s~V~~dVpp 176 (255)
T PRK12461 161 LAMMAGG-SRISKDVPP 176 (255)
T ss_pred CcEECCC-ceEeccCCC
Confidence 9997654 556565553
No 34
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.75 E-value=1.8e-17 Score=141.70 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=85.5
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCC----------CcEEECCCCEECCCCEEecCCCCCc-------c
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL----------NKITVGFCSNVQERCVLHAAWNSPY-------R 135 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~----------~~v~IG~~~~I~~~~~I~~~~~~~~-------~ 135 (284)
..|+|++.|.|+++|+++|.||+.|+|++++.|. +. +..+||+++.|.+.+.|+...++-. -
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig-~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l 82 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIG-DGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRL 82 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEEC-CCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEE
Confidence 4688888888888888888888888888888874 32 1234455555555555544333211 0
Q ss_pred cccceeeeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842 136 FVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL 214 (284)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V 214 (284)
.+|.++.+.++...+.....+ ..-+.||+++++-+++.| |+|+||++|++..++++..+|.|||.++|+..+.|
T Consensus 83 ~IG~~n~IRE~vTi~~GT~~g-----~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saV 157 (260)
T COG1043 83 IIGDNNTIREFVTIHRGTVQG-----GGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAV 157 (260)
T ss_pred EECCCCeEeeEEEEeccccCC-----ceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceE
Confidence 223333332222111110000 012344444444444444 45666666666666666666666666666666666
Q ss_pred CCCCeeCCCCEEeccCceeeccCCH
Q 039842 215 PPGRRIPTGELWAGNPARFVRTLTH 239 (284)
Q Consensus 215 ~~~~~I~~~~vv~G~pa~~~~~~~~ 239 (284)
-+.+.|++++++.|- +.+.+++++
T Consensus 158 HQFvrIG~~amiGg~-S~v~~DVpP 181 (260)
T COG1043 158 HQFVRIGAHAMIGGL-SAVSQDVPP 181 (260)
T ss_pred EEEEEEcchheeccc-cccccCCCC
Confidence 666666666665544 334455544
No 35
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.75 E-value=5.3e-17 Score=138.40 Aligned_cols=150 Identities=23% Similarity=0.333 Sum_probs=97.9
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee--------
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI-------- 144 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~-------- 144 (284)
..++++++|+|++.|.+++.||++|+|++++.|. + ..||++|.|++++.|....-.....+|..+.+.
T Consensus 16 v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~-~---~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~ 91 (193)
T cd03353 16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK-D---STIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG 91 (193)
T ss_pred eEECCCcEECCCCEEeCcCEECCCCEECCCcEEe-C---CEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence 4577777777777777777777777777777775 2 255555555554444321111111111111111
Q ss_pred ----------cccccCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCC
Q 039842 145 ----------DLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHA 206 (284)
Q Consensus 145 ----------~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~ 206 (284)
+... .+.......+.. .++.||+++.||+++.+. +++|||+||||.+++|.++++||+++
T Consensus 92 ~~Ig~~~~i~~s~i-g~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~ 169 (193)
T cd03353 92 VHIGNFVEIKKSTI-GEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGA 169 (193)
T ss_pred CEECCcEEEecceE-cCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCc
Confidence 0000 000000011112 357888888888888773 68999999999999999999999999
Q ss_pred EEcCCCeeCCCCeeCCCCEEeccC
Q 039842 207 ILEAGSVLPPGRRIPTGELWAGNP 230 (284)
Q Consensus 207 ~I~a~s~V~~~~~I~~~~vv~G~p 230 (284)
+|+++++|. +++|+++++.|.|
T Consensus 170 ~i~~gs~V~--~~v~~~~~v~~~~ 191 (193)
T cd03353 170 TIAAGSTIT--KDVPPGALAIARA 191 (193)
T ss_pred EECCCCEEc--cccCCCCEEEecc
Confidence 999999999 8999999999875
No 36
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.75 E-value=4.1e-17 Score=155.91 Aligned_cols=156 Identities=23% Similarity=0.282 Sum_probs=111.3
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC-
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR- 152 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~- 152 (284)
.+++++.|++++.|.++++||++|.|++++.|. + +.||++|.|++++.|....-.....+|.++.+.......++
T Consensus 263 ~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~---~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~ 338 (451)
T TIGR01173 263 EIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-N---SVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGV 338 (451)
T ss_pred EECCCCEEcCCeEEeCceEECCCCEECCCcEEe-e---eEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCc
Confidence 467888999999998899999999999999885 4 67777777777666654332222223322222211000000
Q ss_pred ----------------CCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 153 ----------------SNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 153 ----------------~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
.......+. .++.||++|.||.++.+. +++|||+|+||.++.|.++++||++++|
T Consensus 339 ~Ig~~~~i~~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 417 (451)
T TIGR01173 339 HIGNFVETKNARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATI 417 (451)
T ss_pred EEccceeecCcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEE
Confidence 000011112 247888888888888773 5899999999999999999999999999
Q ss_pred cCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842 209 EAGSVLPPGRRIPTGELWAGNPARFVRT 236 (284)
Q Consensus 209 ~a~s~V~~~~~I~~~~vv~G~pa~~~~~ 236 (284)
+++++|. .+||+++++.|.|+.+..+
T Consensus 418 ~~g~~v~--~~v~~~~~~~~~~~~~~~~ 443 (451)
T TIGR01173 418 AAGSTVT--KDVPEGALAISRARQRNIE 443 (451)
T ss_pred ccCCEEC--ccCCCCcEEEccCceeecc
Confidence 9999999 8999999999988876543
No 37
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.74 E-value=4.5e-17 Score=138.59 Aligned_cols=116 Identities=22% Similarity=0.454 Sum_probs=102.9
Q ss_pred CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842 76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS 155 (284)
Q Consensus 76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (284)
...+.+++.+.+.+++.||+++.|+++++|..+ ++||++|.|++++.|..
T Consensus 85 ~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~--------------------------- 134 (201)
T TIGR03570 85 RFATLIHPSAIVSPSASIGEGTVIMAGAVINPD---VRIGDNVIINTGAIVEH--------------------------- 134 (201)
T ss_pred cceEEecCCeEECCCCEECCCCEECCCCEECCC---CEECCCcEECCCCEEcC---------------------------
Confidence 344677888888888889999999999988544 88999999999998842
Q ss_pred cccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCc
Q 039842 156 LYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPA 231 (284)
Q Consensus 156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa 231 (284)
++.||++++|+.++.+. .++||++|+||.++.+.+++.||++|+|+++++|. .++|+++++.|+||
T Consensus 135 --------~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~--~~~~~~~~~~g~pa 201 (201)
T TIGR03570 135 --------DCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVT--KDIPDGGVVVGVPA 201 (201)
T ss_pred --------CCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEC--CcCCCCCEEEeccC
Confidence 37899999999999986 79999999999999999999999999999999998 78999999999997
No 38
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.74 E-value=5.8e-17 Score=131.24 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=96.7
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
..+++++.|.+.+.+..++.||+++.|++++.|..+ ++||++|.|++++.|+.....
T Consensus 14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~igg~~~~-------------------- 70 (139)
T cd03350 14 AFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSC---AQIGKNVHLSAGAVIGGVLEP-------------------- 70 (139)
T ss_pred CEECCCCEECCCCEEccCCEECCCeEEcCCCEECCC---CEECCCCEECCCCEECCcccc--------------------
Confidence 345666666666666667777777777777777433 778888888888887532110
Q ss_pred CCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCC-CEEeccC
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTG-ELWAGNP 230 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~-~vv~G~p 230 (284)
....+++|+++++|+++++| .+++||+++.|+++++|.++++|+++ +++++|. +++|++ ++++|+|
T Consensus 71 -------~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~--~~~~~~~~~~~g~~ 138 (139)
T cd03350 71 -------LQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYY--GRVPPGSVVVAGSL 138 (139)
T ss_pred -------cccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEe--cccCCCCEEecccC
Confidence 01235899999999999999 68999999999999999999999998 9999999 999999 8999987
Q ss_pred c
Q 039842 231 A 231 (284)
Q Consensus 231 a 231 (284)
.
T Consensus 139 ~ 139 (139)
T cd03350 139 P 139 (139)
T ss_pred C
Confidence 3
No 39
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.74 E-value=5.5e-17 Score=125.55 Aligned_cols=106 Identities=21% Similarity=0.252 Sum_probs=87.4
Q ss_pred cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842 89 GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE 168 (284)
Q Consensus 89 ~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig 168 (284)
.+++||+++.|++++.|. +...++||++|.|++++.|....+... ..
T Consensus 2 ~~i~iG~~~~I~~~~~i~-~~~~i~IG~~~~I~~~~~I~~~~h~~~--------------------------------~~ 48 (107)
T cd05825 2 WNLTIGDNSWIGEGVWIY-NLAPVTIGSDACISQGAYLCTGSHDYR--------------------------------SP 48 (107)
T ss_pred ceEEECCCCEECCCCEEe-eCCceEECCCCEECCCeEeecCCCCCC--------------------------------cC
Confidence 468899999999999996 455799999999999999976544211 11
Q ss_pred CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842 169 RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234 (284)
Q Consensus 169 ~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~ 234 (284)
+.. ....+++|||+||||.++.|.++++||++|+|+++++|. .++|++++++|+||+++
T Consensus 49 ~~~-----~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~--~~~~~~~~~~G~Pa~~~ 107 (107)
T cd05825 49 AFP-----LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVV--RDLPAWTVYAGNPAVPV 107 (107)
T ss_pred ccc-----eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEe--CcCCCCCEEECCccEeC
Confidence 111 123678999999999999999999999999999999999 78999999999999864
No 40
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.73 E-value=6.9e-17 Score=142.51 Aligned_cols=114 Identities=20% Similarity=0.346 Sum_probs=71.9
Q ss_pred CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842 78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY 157 (284)
Q Consensus 78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 157 (284)
++.|.|++.+..++.||++++|.++ .+... +.||++|.|..+++|+.
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vnig---a~IGeGt~I~~~a~IG~----------------------------- 146 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIG---AYVDEGTMVDTWATVGS----------------------------- 146 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeee-EEcCC---cEECCCCEECCCcEECC-----------------------------
Confidence 4455555555555555555555543 22111 45666666666665542
Q ss_pred cccCCcceEECCCCEECCCcee---------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC----------
Q 039842 158 IAWLPAETSIERFVTIGAYCSL---------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR---------- 218 (284)
Q Consensus 158 ~~~~~~~v~Ig~~v~Ig~~~~I---------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~---------- 218 (284)
+++||++|.|+.++.| ++++|||+|+||++|.|.++++||++|+|+++++|++++
T Consensus 147 ------~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v 220 (269)
T TIGR00965 147 ------CAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEI 220 (269)
T ss_pred ------CCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCce
Confidence 3667777777776666 456777777777777777777777777777777776543
Q ss_pred ---eeCCCCEEe-c-cC
Q 039842 219 ---RIPTGELWA-G-NP 230 (284)
Q Consensus 219 ---~I~~~~vv~-G-~p 230 (284)
.||+++++. | .|
T Consensus 221 ~~~~vp~~svv~~g~~p 237 (269)
T TIGR00965 221 HYGRVPAGSVVVSGNLP 237 (269)
T ss_pred eeeecCCCcEEecCCee
Confidence 789999987 4 45
No 41
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.73 E-value=9.4e-17 Score=135.33 Aligned_cols=115 Identities=24% Similarity=0.462 Sum_probs=102.1
Q ss_pred CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842 76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS 155 (284)
Q Consensus 76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (284)
.....+++.+.+.+++.||+++.|+++++|..+ ++||++|.|++++.|..
T Consensus 82 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~--------------------------- 131 (197)
T cd03360 82 RFATLIHPSAVVSPSAVIGEGCVIMAGAVINPD---ARIGDNVIINTGAVIGH--------------------------- 131 (197)
T ss_pred ccceEECCCeEECCCCEECCCCEEcCCCEECCC---CEECCCeEECCCCEECC---------------------------
Confidence 344678888888888889999999999988544 88999999999998853
Q ss_pred cccccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842 156 LYIAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP 230 (284)
Q Consensus 156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p 230 (284)
+++||++++|+.++.+. +++||++|+||.++.|.++++||++++|+++++|. .++|+++++.|+|
T Consensus 132 --------~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~--~~~~~~~~~~g~p 197 (197)
T cd03360 132 --------DCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVT--KDVPDGSVVVGNP 197 (197)
T ss_pred --------CCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEc--CCCCCCCEEEecC
Confidence 37899999999999995 59999999999999999999999999999999999 6899999999998
No 42
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.73 E-value=1e-16 Score=129.85 Aligned_cols=119 Identities=20% Similarity=0.227 Sum_probs=98.4
Q ss_pred EEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccc
Q 039842 80 YVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIA 159 (284)
Q Consensus 80 ~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 159 (284)
.|+|++.|++++.|++++.|.+++.|..+ +.||++|.|+.++.|+.
T Consensus 3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~---~~IG~~~~I~~~~~I~~------------------------------- 48 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIG---AYVDEGTMVDSWATVGS------------------------------- 48 (139)
T ss_pred ccCCCcEECCCCEECCCCEECCCCEEccC---CEECCCeEEcCCCEECC-------------------------------
Confidence 56677777777777777777777777433 67888888888887742
Q ss_pred cCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842 160 WLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP 230 (284)
Q Consensus 160 ~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p 230 (284)
+++||++|.|+.++.+. +++||++|+||++++|.++++||++++|+++++|.++..|.++ |.-
T Consensus 49 ----~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~----~~~ 120 (139)
T cd03350 49 ----CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR----ETG 120 (139)
T ss_pred ----CCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc----Ccc
Confidence 37888888888888884 5899999999999999999999999999999999999999887 777
Q ss_pred ceeeccCCHH
Q 039842 231 ARFVRTLTHE 240 (284)
Q Consensus 231 a~~~~~~~~~ 240 (284)
+.++++.++.
T Consensus 121 ~~v~~~~~~~ 130 (139)
T cd03350 121 EIYYGRVPPG 130 (139)
T ss_pred cEEecccCCC
Confidence 8888877764
No 43
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.72 E-value=1.4e-16 Score=152.86 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=108.2
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc-----
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM----- 148 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~----- 148 (284)
.+++++.|++++.|.++++||+++.|+++|.|. + ++||++|.|++++.|....-.....+|.++.+.....
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~---~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~ 342 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-N---CVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGA 342 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEe-c---CEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCc
Confidence 367788888888888888888888888888884 3 5666666666666554322222222222222221000
Q ss_pred ------------cCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 149 ------------SCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 149 ------------~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
.........+.+. +++.||++|.||+++++. +++|||+|+||.+|.|.++++||++++|
T Consensus 343 ~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 421 (456)
T PRK09451 343 HVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI 421 (456)
T ss_pred eeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence 0000011112222 468999999999998773 5899999999999999999999999999
Q ss_pred cCCCeeCCCCeeCCCCEEe-ccCceeecc
Q 039842 209 EAGSVLPPGRRIPTGELWA-GNPARFVRT 236 (284)
Q Consensus 209 ~a~s~V~~~~~I~~~~vv~-G~pa~~~~~ 236 (284)
+++++|. ++||+++++. |.|++.+.+
T Consensus 422 ~~gs~v~--~~v~~~~~~~~~~~~~~~~~ 448 (456)
T PRK09451 422 GAGTTVT--RDVAENELVISRVPQRHIQG 448 (456)
T ss_pred CCCCEEc--cccCCCCEEEeccCceeccc
Confidence 9999999 8999999985 578887655
No 44
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.71 E-value=1.7e-17 Score=131.65 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=137.0
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
.+|.+++.+...+.|.++++|+++|+|+|.+++..+.++++||+|++|.+.++|...-..... +
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~------------~---- 72 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAV------------W---- 72 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCc------------c----
Confidence 467777888877888999999999999999999999999999999999999998653221100 0
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~ 232 (284)
..-..+.+||.+....-+|......+||+.+|+..+.+++||.+.++|.||+.+.|.....+|+++++.|....
T Consensus 73 ------d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L 146 (190)
T KOG4042|consen 73 ------DSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNL 146 (190)
T ss_pred ------CCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccc
Confidence 00113689999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred eeccCC-----HHHHhhhhhhHHHHHHHHHHH
Q 039842 233 FVRTLT-----HEETLEIPKLAVAINDLSKSH 259 (284)
Q Consensus 233 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 259 (284)
.....+ ..+++|+++..+.|.+|.+..
T Consensus 147 ~R~~~~~~~~qtlQidFLrKiLPnYHHL~k~~ 178 (190)
T KOG4042|consen 147 SRTTKTPNMTQTLQIDFLRKILPNYHHLYKKK 178 (190)
T ss_pred cceecCCCCCccchHHHHHHHccchhhhhccc
Confidence 443222 237899999999998887653
No 45
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=135.63 Aligned_cols=130 Identities=24% Similarity=0.278 Sum_probs=102.5
Q ss_pred CCCcEEcCCcEE--e-cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 76 AVDAYVAPNVVL--A-GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 76 ~~~~~I~~~a~i--~-~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
...+.+.+.... + .++.+|+++.++.++.+. ....++||+++.++++|.|.+..|....
T Consensus 50 ~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~----------------- 111 (190)
T COG0110 50 GEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDF----------------- 111 (190)
T ss_pred CCccEECCCEEEecCCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCCh-----------------
Confidence 344566666555 4 688999999999999975 5667999999999999999876552111
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~ 232 (284)
.....+......+++||++||||++++|++|++||++++|+++++|. +++|++++++|+||+
T Consensus 112 ----------------~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVt--kdvp~~~iv~G~Pa~ 173 (190)
T COG0110 112 ----------------VTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVT--KDVPPYGIVAGNPAR 173 (190)
T ss_pred ----------------hhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEe--CccCCCeEEeCCcce
Confidence 00000112334578999999999999999999999999999999999 899999999999999
Q ss_pred eeccCCHHH
Q 039842 233 FVRTLTHEE 241 (284)
Q Consensus 233 ~~~~~~~~~ 241 (284)
+++++...+
T Consensus 174 vir~~~~~~ 182 (190)
T COG0110 174 VIRKRDVVA 182 (190)
T ss_pred EEEecchhh
Confidence 988766543
No 46
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.71 E-value=2.1e-16 Score=140.56 Aligned_cols=128 Identities=24% Similarity=0.351 Sum_probs=86.7
Q ss_pred EEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccc
Q 039842 80 YVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIA 159 (284)
Q Consensus 80 ~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 159 (284)
++.+++++.+++.|+++++|+++++|. . ..|+.++.|+++|.|+....
T Consensus 99 ~~~~~~rI~p~a~V~~ga~Ig~gavI~-p---~~V~iGa~Ig~gt~I~~~a~---------------------------- 146 (272)
T PRK11830 99 FKEAGVRVVPGAVVRRGAYIAPNVVLM-P---SYVNIGAYVDEGTMVDTWAT---------------------------- 146 (272)
T ss_pred hccCCcEEcCCeEECCCCEECCCcEEE-E---EEECCCCEECCCcEEccccE----------------------------
Confidence 677777787788888888888888876 2 44555555666665543322
Q ss_pred cCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCC------------
Q 039842 160 WLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGR------------ 218 (284)
Q Consensus 160 ~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~------------ 218 (284)
...+++||++|.|++++.|+ +++|||+|+||++|+|.++++||++|+|+++++|.+++
T Consensus 147 -IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~ 225 (272)
T PRK11830 147 -VGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHY 225 (272)
T ss_pred -ECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEe
Confidence 11235677777777776664 36777777777777777777777777777777776533
Q ss_pred -eeCCCCEEe-c-----------cCceeeccCCHH
Q 039842 219 -RIPTGELWA-G-----------NPARFVRTLTHE 240 (284)
Q Consensus 219 -~I~~~~vv~-G-----------~pa~~~~~~~~~ 240 (284)
.||+++++. | .||++++.++++
T Consensus 226 g~vp~~svvv~g~~~~~~~~~~~~~~~i~~~~~~~ 260 (272)
T PRK11830 226 GRVPAGSVVVPGSLPSKDGGYSLYCAVIVKKVDAK 260 (272)
T ss_pred eecCCCcEEecCcccccCCCcCCcCcEEEEEcccc
Confidence 577788876 6 378888777554
No 47
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.71 E-value=8.2e-17 Score=143.16 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=89.6
Q ss_pred EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842 81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW 160 (284)
Q Consensus 81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
+...+.+..++.|++++.|++++.|. ....++||++|.||++|.|..
T Consensus 132 ~~~~~~~~~gidI~~~a~IG~g~~I~-h~~givIG~~a~IGdnv~I~~-------------------------------- 178 (273)
T PRK11132 132 LQNQISVAFQVDIHPAAKIGRGIMLD-HATGIVIGETAVIENDVSILQ-------------------------------- 178 (273)
T ss_pred hhhcceeeeeeEecCcceECCCeEEc-CCCCeEECCCCEECCCCEEcC--------------------------------
Confidence 34445556677777777777777774 444588888888888877742
Q ss_pred CCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCC
Q 039842 161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLT 238 (284)
Q Consensus 161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~ 238 (284)
+++||... ..+....++||++|+||++|+|.++++||++|+||++++|. ++||+++++.|+||++++...
T Consensus 179 ---~VtiGg~~---~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~--~dVp~~~~v~G~PArvi~~~~ 248 (273)
T PRK11132 179 ---SVTLGGTG---KTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL--QPVPPHTTAAGVPARIVGKPE 248 (273)
T ss_pred ---CcEEecCc---ccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEEC--cccCCCcEEEecCcEEeCccc
Confidence 24444321 12223457999999999999999999999999999999999 789999999999999987653
No 48
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.71 E-value=6.2e-17 Score=133.59 Aligned_cols=100 Identities=19% Similarity=0.301 Sum_probs=91.7
Q ss_pred EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842 92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV 171 (284)
Q Consensus 92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v 171 (284)
.|++.++|.+.+.|.|| ++||+++.|+.+++|.++.. ++.||+++
T Consensus 13 ~i~~~a~Va~~A~viGd---V~Ig~~vsIw~~aVlRgD~~--------------------------------~I~IG~~t 57 (176)
T COG0663 13 KIDPTAFVAPSATVIGD---VRIGAGVSIWPGAVLRGDVE--------------------------------PIRIGART 57 (176)
T ss_pred CCCCceEECCCCEEEEe---EEECCCCEECCceEEEccCC--------------------------------ceEECCCc
Confidence 47888999999999999 99999999999999987643 58999999
Q ss_pred EECCCceee-----ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842 172 TIGAYCSLR-----SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA 227 (284)
Q Consensus 172 ~Ig~~~~I~-----~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~ 227 (284)
.|.+||+|| +++||++|.||.+++| +||+||++|+||.|++|-.+..|++++++.
T Consensus 58 NIQDg~ViH~~~~~p~~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga~IG~~~iVg 117 (176)
T COG0663 58 NIQDGVVIHADPGYPVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVG 117 (176)
T ss_pred eecCCeEEecCCCCCeEECCCcEEcCccEE-EEeEECCCcEEecCceEeCCcEECCCcEEc
Confidence 999999996 5899999999999988 569999999999999999999999999863
No 49
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.71 E-value=3.4e-16 Score=139.18 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=123.1
Q ss_pred CCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-------Ccccccceeee
Q 039842 71 WVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-------PYRFVGFVSLL 143 (284)
Q Consensus 71 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~g~~~~~ 143 (284)
+...+++++.|+|++.|.+++.||++|.|+++++|.++ ++||++|.|+++++|+....+ ....+|.++.+
T Consensus 10 ~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 86 (254)
T cd03351 10 PGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGP---TTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTI 86 (254)
T ss_pred CCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCC---eEECCCCEEecceeecCcccceeecCCCceEEECCCCEE
Confidence 44568888999999999999999999999999999766 999999999999999753221 12334555554
Q ss_pred ecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCC
Q 039842 144 IDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPT 222 (284)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~ 222 (284)
.+......... .....++||++|.|+++++| +.++||++|+|+.++.+.++++||++|+|++++.|.+++.|++
T Consensus 87 g~~~~I~~~~~-----~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~ 161 (254)
T cd03351 87 REFVTIHRGTA-----QGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGR 161 (254)
T ss_pred CCccEEecccc-----CCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECC
Confidence 43322111000 00135899999999999999 7899999999999999999999999999999999999999999
Q ss_pred CCEEeccCceeeccCC
Q 039842 223 GELWAGNPARFVRTLT 238 (284)
Q Consensus 223 ~~vv~G~pa~~~~~~~ 238 (284)
++++.+. +.+.+.++
T Consensus 162 ~~~Ig~~-s~V~~~i~ 176 (254)
T cd03351 162 HAMVGGG-SGVVQDVP 176 (254)
T ss_pred CCEECcC-CEEeeecC
Confidence 9987655 55555554
No 50
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.70 E-value=2e-16 Score=141.18 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=119.2
Q ss_pred CCCceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCC-------Ccccccceee
Q 039842 70 QWVPKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNS-------PYRFVGFVSL 142 (284)
Q Consensus 70 ~~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~-------~~~~~g~~~~ 142 (284)
.+...+++++.|+|++.|+++++||++|.|+++++|.++ ++||++|.|+++++|+...++ ....+|.++.
T Consensus 12 ~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~ 88 (262)
T PRK05289 12 EPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGH---TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNT 88 (262)
T ss_pred CCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCc---cEECCCCEEcccceecCCceeecccCCCCeEEECCCCE
Confidence 344578888888888888889999999999999999766 999999999999999764332 1223444444
Q ss_pred eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842 143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
+.+......-. ......++||+++.|+.++.| ++++||++|+|+.++.+.++++||++|+|+++++|.++..|+
T Consensus 89 I~e~~~I~~~~-----~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig 163 (262)
T PRK05289 89 IREFVTINRGT-----VQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIG 163 (262)
T ss_pred ECCCeEEeccc-----ccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEEC
Confidence 43322111000 001124678888888888888 478889999999998899999999999999999999999999
Q ss_pred CCCEEeccCceeeccCC
Q 039842 222 TGELWAGNPARFVRTLT 238 (284)
Q Consensus 222 ~~~vv~G~pa~~~~~~~ 238 (284)
+++++.+. +.+.++++
T Consensus 164 ~~~~Ig~g-s~V~~di~ 179 (262)
T PRK05289 164 AHAMVGGM-SGVSQDVP 179 (262)
T ss_pred CCCEEeee-cceeccCC
Confidence 99987654 66666665
No 51
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.70 E-value=3.7e-16 Score=149.45 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=100.9
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCC----------------EECCCCEEecCCCCCccc
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCS----------------NVQERCVLHAAWNSPYRF 136 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~----------------~I~~~~~I~~~~~~~~~~ 136 (284)
..|++++.|+|++.|.+++.||++|.|++++.|. + ++||++| .|++++.|..+. .
T Consensus 256 ~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~---s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~-----~ 326 (448)
T PRK14357 256 VEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-D---CEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGT-----V 326 (448)
T ss_pred eEECCCcEEcCCcEEEeeeEECCCcEECCCceec-c---cEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcc-----c
Confidence 3566666777777777777777777777777653 2 3333333 333333332211 1
Q ss_pred ccceeeeeccccc-----CCCCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEEC
Q 039842 137 VGFVSLLIDLQMS-----CPRSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVE 203 (284)
Q Consensus 137 ~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig 203 (284)
+|.++.+.+.... ..........+. .+++||++|.||+++.+ ++++|||+|+||.+++|.++++||
T Consensus 327 ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig 405 (448)
T PRK14357 327 LKKSVKIGNFVEIKKSTIGENTKAQHLTYL-GDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIG 405 (448)
T ss_pred ccCCcEecCceeeeccEEcCCcCccccccc-cCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEEC
Confidence 2222222211000 000000111112 35899999999999887 469999999999999999999999
Q ss_pred CCCEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842 204 THAILEAGSVLPPGRRIPTGELWAGNPARFVRT 236 (284)
Q Consensus 204 ~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~ 236 (284)
++++|+++++|. .+||+++++.|.|.++++.
T Consensus 406 ~~~~i~ag~~v~--~~v~~~~~~~g~~~~~~~~ 436 (448)
T PRK14357 406 KGALIGAGSVIT--EDVPPYSLALGRARQIVKE 436 (448)
T ss_pred CCCEEcCCCEEC--CcCCCCcEEEccccEEecc
Confidence 999999999999 8999999999999998654
No 52
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.70 E-value=4.5e-16 Score=149.45 Aligned_cols=154 Identities=18% Similarity=0.295 Sum_probs=108.2
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC-
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP- 151 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~- 151 (284)
..+++++.|++++.|.+++.||++|.|+++++|. + ++||++|.|+++++|....-.....+|.++.+.......+
T Consensus 269 v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~---~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~ 344 (459)
T PRK14355 269 VVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-G---CRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH 344 (459)
T ss_pred eEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-C---CEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC
Confidence 3567777888888888888888888888888885 4 7788888887777765322111122222222211000000
Q ss_pred ----------------CCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCE
Q 039842 152 ----------------RSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAI 207 (284)
Q Consensus 152 ----------------~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~ 207 (284)
........+. ++++||++|.||.++++ +++.|||+|+||.+++|.++++||++++
T Consensus 345 ~~ig~~~~~~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ 423 (459)
T PRK14355 345 VKIGNFVETKKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSL 423 (459)
T ss_pred CEECCCccccCCEECCCceeeeeccc-cCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCE
Confidence 0000011222 46899999999999876 3689999999999999999999999999
Q ss_pred EcCCCeeCCCCeeCCCCEEeccCcee
Q 039842 208 LEAGSVLPPGRRIPTGELWAGNPARF 233 (284)
Q Consensus 208 I~a~s~V~~~~~I~~~~vv~G~pa~~ 233 (284)
|+++++|. ++||+++++.|.+...
T Consensus 424 i~a~s~v~--~~v~~~~~~~~~~~~~ 447 (459)
T PRK14355 424 IAAGTTVT--KDVPPDSLAIARSPQV 447 (459)
T ss_pred ECCCCEEc--ccCCCCcEEEecccee
Confidence 99999999 8999999999865554
No 53
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.69 E-value=8.8e-16 Score=127.50 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=89.5
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (284)
..+++++.|++++.|.+++.||++|.|++++.|.++ ++||++|.|++++.|.
T Consensus 18 v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~------------------------- 69 (163)
T cd05636 18 VWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGY---TVLGDGCVVGNSVEVK------------------------- 69 (163)
T ss_pred eEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCC---CEECCCCEECCCcEEe-------------------------
Confidence 357888899999999889999999999999999755 8899999999999884
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcC------------------------CCEECCCCEE
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILME------------------------GSMVETHAIL 208 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~------------------------gv~Ig~~~~I 208 (284)
+++|++++.|++++.+..++||+++.|++++++.. ++.|+++++|
T Consensus 70 -----------~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~i 138 (163)
T cd05636 70 -----------NSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKT 138 (163)
T ss_pred -----------eeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEE
Confidence 36677777777777777777777777777776632 5677777777
Q ss_pred cCCCeeCCCCeeCCCCEE
Q 039842 209 EAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 209 ~a~s~V~~~~~I~~~~vv 226 (284)
+.++.+.++..|++++++
T Consensus 139 g~~~~i~~g~~ig~~~~i 156 (163)
T cd05636 139 GINVSLNPGVKIGPGSWV 156 (163)
T ss_pred CCCcEECCCcEECCCCEE
Confidence 777777767777766664
No 54
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.69 E-value=5.7e-16 Score=126.29 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=91.1
Q ss_pred eEECCCCEECC-CCEEecCCCcEEECCCCEECCCCEEecC-CCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842 91 VTVCDGASVWP-GSVLRGDLNKITVGFCSNVQERCVLHAA-WNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE 168 (284)
Q Consensus 91 v~IG~~~~I~~-~~~I~g~~~~v~IG~~~~I~~~~~I~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig 168 (284)
+.||++++|++ .+.+ +. ..++||++|.|++++.|... .|.... .+.+ +..++
T Consensus 2 ~~iG~~s~i~~~~~~~-~~-~~i~IG~~~~I~~~v~i~~~~~H~~~~----------------------~~~~--p~~~~ 55 (145)
T cd03349 2 ISVGDYSYGSGPDCDV-GG-DKLSIGKFCSIAPGVKIGLGGNHPTDW----------------------VSTY--PFYIF 55 (145)
T ss_pred EEEeCceeeCCCCceE-eC-CCeEECCCCEECCCCEECCCCCCCCCC----------------------cccc--ceEee
Confidence 57888999988 4555 33 56999999999999999877 331110 0001 11222
Q ss_pred CCC-----EECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842 169 RFV-----TIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240 (284)
Q Consensus 169 ~~v-----~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~ 240 (284)
++. .........+++|||+|+||.+++|.++++||++|+|+++++|. .++|++++++|+||++++++..+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~--~~v~~~~v~~G~Pa~~i~~~~~~ 130 (145)
T cd03349 56 GGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT--KDVPPYAIVGGNPAKVIRYRFDE 130 (145)
T ss_pred ccccccccccccccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc--cccCCCeEEEecCCEeehhhCCH
Confidence 222 12223344679999999999999999999999999999999999 78999999999999999875443
No 55
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.69 E-value=5.2e-16 Score=148.34 Aligned_cols=155 Identities=22% Similarity=0.263 Sum_probs=104.3
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCC-CCcccccceeeeecccccCCC
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWN-SPYRFVGFVSLLIDLQMSCPR 152 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~-~~~~~~g~~~~~~~~~~~~~~ 152 (284)
.|++++.|++++.|++++.||++|.|++++.|. + +.||++|.|+++++|...+. .....+|.++.+.+... .+.
T Consensus 270 ~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~---~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i-~~~ 344 (446)
T PRK14353 270 VIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLE-G---AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKL-GEG 344 (446)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCeEEe-c---cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEE-CCC
Confidence 455566666666666666666666666665553 2 67777777777777763322 12223343333321110 011
Q ss_pred CCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCC
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGE 224 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~ 224 (284)
......... .+++||++|.||+++++ ++++||++|+||++++|.++++||++++|+++++|. .++|+++
T Consensus 345 ~~i~~~~~i-~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~--~~v~~~~ 421 (446)
T PRK14353 345 AKVNHLTYI-GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVIT--EDVPDDA 421 (446)
T ss_pred CEECCeeEE-cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEEC--ccCCCCC
Confidence 000111111 35789999999999876 368999999999999999999999999999999999 8999999
Q ss_pred EEeccCceeecc
Q 039842 225 LWAGNPARFVRT 236 (284)
Q Consensus 225 vv~G~pa~~~~~ 236 (284)
+++|.|....+.
T Consensus 422 ~~~g~~~~~~~~ 433 (446)
T PRK14353 422 LALGRARQETKP 433 (446)
T ss_pred EEEecCceEecc
Confidence 999998865443
No 56
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.68 E-value=5.3e-16 Score=148.39 Aligned_cols=159 Identities=16% Similarity=0.266 Sum_probs=103.0
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEec----CCC--------cEEECCCCEECCCCEEecCCC-CCcccccce
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRG----DLN--------KITVGFCSNVQERCVLHAAWN-SPYRFVGFV 140 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g----~~~--------~v~IG~~~~I~~~~~I~~~~~-~~~~~~g~~ 140 (284)
.+++++.|++++.|.+++.||++|.|++++.|.. +.. .+.||++|.|+++|+|..... .....+|.+
T Consensus 264 ~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~ 343 (450)
T PRK14360 264 ELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNF 343 (450)
T ss_pred EECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCC
Confidence 4566677777777777777888887777776641 100 123444444444444432211 111122222
Q ss_pred eeeecccccCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEEcCCC
Q 039842 141 SLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAILEAGS 212 (284)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s 212 (284)
..+.+... .+.....+..+. .+++||++|.||+++.+. +++||++|+||.+++|.++++||++++|++++
T Consensus 344 ~~i~~~~i-~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~ 421 (450)
T PRK14360 344 VEIKKSQL-GEGSKVNHLSYI-GDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGS 421 (450)
T ss_pred EEEecccc-CCCcEeccceec-CCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCC
Confidence 22211100 000011111122 358899999999999874 69999999999999999999999999999999
Q ss_pred eeCCCCeeCCCCEEeccCceeecc
Q 039842 213 VLPPGRRIPTGELWAGNPARFVRT 236 (284)
Q Consensus 213 ~V~~~~~I~~~~vv~G~pa~~~~~ 236 (284)
+|. .+||+++++.|+|++.+++
T Consensus 422 ~v~--~~~~~~~~~~g~~~~~~~~ 443 (450)
T PRK14360 422 TIT--KDVPDNSLAIARSRQVIKE 443 (450)
T ss_pred EEC--ccCCCCCEEEeccceeecc
Confidence 999 8999999999998886643
No 57
>PLN02694 serine O-acetyltransferase
Probab=99.68 E-value=3.6e-16 Score=139.27 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=85.8
Q ss_pred ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842 90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER 169 (284)
Q Consensus 90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~ 169 (284)
++.|++++.|++++.|. ....++||++|.|+++|.|.. ++++|.
T Consensus 160 gvdI~p~A~IG~gv~Id-h~tGVVIGe~a~IGdnv~I~~-----------------------------------~VtLGg 203 (294)
T PLN02694 160 AVDIHPAAKIGKGILFD-HATGVVIGETAVIGNNVSILH-----------------------------------HVTLGG 203 (294)
T ss_pred eEEeCCcceecCCEEEe-CCCCeEECCCcEECCCCEEee-----------------------------------cceeCC
Confidence 45566666666666664 334588888888888888753 255554
Q ss_pred CCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842 170 FVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL 237 (284)
Q Consensus 170 ~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~ 237 (284)
. +..+..+.++|||+|+||++++|.++++||++|+|+++++|. ++||++++++|+|++++...
T Consensus 204 ~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~--kdVP~~~~v~G~PAkiv~~~ 266 (294)
T PLN02694 204 T---GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVL--IDVPPRTTAVGNPARLVGGK 266 (294)
T ss_pred c---ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEEC--CcCCCCcEEEccCcEEEccC
Confidence 3 344556778999999999999999999999999999999999 89999999999999998763
No 58
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.68 E-value=3.4e-16 Score=149.64 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=97.1
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCC-cccccceeeeecccccCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSP-YRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 153 (284)
+++.+.|++++.|++++.||+++.|+++|.|... ..| .++.|+++|+|+...... ...+|.++.+.+..
T Consensus 265 ~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~---~~i-~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~------ 334 (446)
T PRK14353 265 FSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAF---SHL-EGAHVGEGAEVGPYARLRPGAELGEGAKVGNFV------ 334 (446)
T ss_pred ECCceEECCCCEECCCCEECCCCEECCCCEECCC---eEE-eccEECCCcEECCCeEEeccceecCCeEEcCce------
Confidence 4455666666666666666666666666666432 444 467888888886554311 11112111111110
Q ss_pred CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEE-------cCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842 154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSIL-------MEGSMVETHAILEAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I-------~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv 226 (284)
.. .++.|++++.+++++.+.+++||++|.||+++++ ..++.||++|+|+++++|.++..|++++++
T Consensus 335 ------~i-~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i 407 (446)
T PRK14353 335 ------EV-KNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYI 407 (446)
T ss_pred ------EE-eceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEE
Confidence 00 1233444444444445556788899999999876 347999999999999999999999999996
Q ss_pred eccCceeeccCCHHHHhh
Q 039842 227 AGNPARFVRTLTHEETLE 244 (284)
Q Consensus 227 ~G~pa~~~~~~~~~~~~~ 244 (284)
|..+.+.+++++....+
T Consensus 408 -g~~s~v~~~v~~~~~~~ 424 (446)
T PRK14353 408 -ASGSVITEDVPDDALAL 424 (446)
T ss_pred -CCCCEECccCCCCCEEE
Confidence 77788888888765543
No 59
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.67 E-value=8.7e-16 Score=148.39 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=104.8
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEec----CC--------CcEEECCCCEECCCCEEecCCCCCccccccee
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRG----DL--------NKITVGFCSNVQERCVLHAAWNSPYRFVGFVS 141 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g----~~--------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~ 141 (284)
.+++++.|+|++.|.+++.||++|.|++++.|.+ +. ..++||++|.|++++.|..+. .+|...
T Consensus 273 ~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~-----vIg~~~ 347 (482)
T PRK14352 273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGT-----VLGEEG 347 (482)
T ss_pred EECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCc-----EEcCCC
Confidence 5778888888888888899999999998888852 00 012233334444333333211 111111
Q ss_pred eeecc-----cccCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 142 LLIDL-----QMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 142 ~~~~~-----~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
.+..+ ....++....+.... .+++||++|.||.++++. .++|||+|+||.+++|.++++||++++|
T Consensus 348 ~ig~~~~~~~~~I~~~~~i~~~~~i-~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~i 426 (482)
T PRK14352 348 KLGAFVETKNATIGRGTKVPHLTYV-GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYT 426 (482)
T ss_pred EECCcEEEcccEECCCcEEccCcee-cccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEE
Confidence 11100 000001111111111 357999999999999884 4999999999999999999999999999
Q ss_pred cCCCeeCCCCeeCCCCEE-eccCceeeccCC
Q 039842 209 EAGSVLPPGRRIPTGELW-AGNPARFVRTLT 238 (284)
Q Consensus 209 ~a~s~V~~~~~I~~~~vv-~G~pa~~~~~~~ 238 (284)
+++++|. .++++++++ .|+|++.++++.
T Consensus 427 gags~v~--~~v~~~~~~~~~~p~~~~~~~~ 455 (482)
T PRK14352 427 GAGTVIR--EDVPPGALAVSEGPQRNIEGWV 455 (482)
T ss_pred CCCCEEc--CCCCCCcEEEeccccccccccc
Confidence 9999999 889999875 589999887754
No 60
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=4.3e-16 Score=143.28 Aligned_cols=152 Identities=23% Similarity=0.332 Sum_probs=106.2
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCE-----------EecCCCC-Ccccccce
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCV-----------LHAAWNS-PYRFVGFV 140 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~-----------I~~~~~~-~~~~~g~~ 140 (284)
..++.++.|+|++++.+++.||++|+|+++|+|. | +.||+++.|.+.++ |++..+. +....|..
T Consensus 269 v~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-d---s~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~ 344 (460)
T COG1207 269 VEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-D---SVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD 344 (460)
T ss_pred EEECCceEEecCcEEeeeEEECCceEECCCcEEE-e---eEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC
Confidence 3688999999999999999999999999998875 4 44554444443222 2222221 11112222
Q ss_pred eeeeccc-cc----CCCCCccccccCCcceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCE
Q 039842 141 SLLIDLQ-MS----CPRSNSLYIAWLPAETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAI 207 (284)
Q Consensus 141 ~~~~~~~-~~----~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~ 207 (284)
..+-++. .. .....-.+.+++ +++.||.+|.||++++. +.++|||+++||+++.+-..++||+++.
T Consensus 345 ~hIGNFVEvK~a~ig~gsKa~HLtYl-GDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~ 423 (460)
T COG1207 345 VHIGNFVEVKKATIGKGSKAGHLTYL-GDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGAT 423 (460)
T ss_pred CeEeeeEEEecccccCCccccceeee-ccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcE
Confidence 2222211 11 111223344444 47899999999999876 4599999999999999999999999999
Q ss_pred EcCCCeeCCCCeeCCCCEEeccCc
Q 039842 208 LEAGSVLPPGRRIPTGELWAGNPA 231 (284)
Q Consensus 208 I~a~s~V~~~~~I~~~~vv~G~pa 231 (284)
|++||+|+ .+||++++..+.+-
T Consensus 424 iaAGStIT--~DVp~~aLai~Rar 445 (460)
T COG1207 424 IAAGSTIT--KDVPEGALAISRAR 445 (460)
T ss_pred EcccceEc--ccCCCCceeEeecc
Confidence 99999999 99999999876533
No 61
>PLN02739 serine acetyltransferase
Probab=99.67 E-value=8.2e-16 Score=139.56 Aligned_cols=57 Identities=21% Similarity=0.434 Sum_probs=53.4
Q ss_pred ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH 239 (284)
Q Consensus 181 ~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~ 239 (284)
.++|||+|+||+|++|.++++||++++|++|++|. .+||++++++|+||++++....
T Consensus 257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~--kDVP~~stvvG~PAriI~~~~~ 313 (355)
T PLN02739 257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVL--KDVPSHSMVAGNPAKLIGFVDE 313 (355)
T ss_pred CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEEC--CCCCCCcEEEecCCEEeccCCc
Confidence 46999999999999999999999999999999999 7899999999999999987653
No 62
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=145.17 Aligned_cols=69 Identities=23% Similarity=0.373 Sum_probs=62.1
Q ss_pred cceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEec-cCcee
Q 039842 163 AETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAG-NPARF 233 (284)
Q Consensus 163 ~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G-~pa~~ 233 (284)
.+++||++|.||+++++. +++|||+|+||.+++|.++++||++++|+++++|. +++|+++++.| .|++.
T Consensus 341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~--~~v~~~~~~~~~~~~~~ 418 (430)
T PRK14359 341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT--KDVPKGSLAISRAPQKN 418 (430)
T ss_pred cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc--cccCCCcEEEeccCcee
Confidence 368999999999998874 58999999999999999999999999999999999 88999999987 56654
No 63
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.67 E-value=2e-15 Score=129.76 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=98.4
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCC-
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPR- 152 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~- 152 (284)
.++++++|+|.+.|..++.||++++|++++.|.++ ++||++|.|+++++|+.+.. +|..+.+.........
T Consensus 3 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~Ig~~~~i~~~~~i~~~~~-----Ig~~~~I~~~~~i~~~~ 74 (205)
T cd03352 3 KIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDG---VVIGDDCVIHPNVTIYEGCI-----IGDRVIIHSGAVIGSDG 74 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCC---CEECCCCEECCCCEEcCCCE-----ECCCcEECCCCEEcCCC
Confidence 35677777777777777777777777777777544 67777777777766654332 2222222221100000
Q ss_pred ----CC--ccccccCCcc----------------------eEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEEC
Q 039842 153 ----SN--SLYIAWLPAE----------------------TSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVE 203 (284)
Q Consensus 153 ----~~--~~~~~~~~~~----------------------v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig 203 (284)
.. .......... +.||+++.|+.++.| +.++||++++|+.++.+.++++||
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig 154 (205)
T cd03352 75 FGFAPDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIG 154 (205)
T ss_pred ceeEecCCcEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEEC
Confidence 00 0000000112 344444445555444 457788888888888888899999
Q ss_pred CCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842 204 THAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241 (284)
Q Consensus 204 ~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~ 241 (284)
++|+|+++++|.++..|++++++.+. +.+.++.++.+
T Consensus 155 ~~~~ig~~~~v~~~~~ig~~~~i~~~-s~v~~~~~~~~ 191 (205)
T cd03352 155 DNVIIGGQVGIAGHLTIGDGVVIGAG-SGVTSIVPPGE 191 (205)
T ss_pred CCeEEcCCCEEeCCcEECCCCEEcCC-CEEeeECCCCC
Confidence 99999999999999999999997655 55556665543
No 64
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.67 E-value=1.3e-15 Score=117.39 Aligned_cols=109 Identities=21% Similarity=0.354 Sum_probs=90.4
Q ss_pred ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842 90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER 169 (284)
Q Consensus 90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~ 169 (284)
++.||++++|++++.|.++ ..+.||++|.|+++|+|....+ ..++.
T Consensus 1 ~v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~---------------------------------~~~~~ 46 (109)
T cd04647 1 NISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNH---------------------------------DIDDP 46 (109)
T ss_pred CeEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCC---------------------------------CCCcc
Confidence 4678889999999988752 4599999999999999986533 23333
Q ss_pred CCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842 170 FVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234 (284)
Q Consensus 170 ~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~ 234 (284)
+..+.......+++||++|+||.++.+.+++.|+++++|++++.|. ..+|+++++.|+||+++
T Consensus 47 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~--~~i~~~~i~~g~pa~~~ 109 (109)
T cd04647 47 ERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVT--KDVPPNSIVAGNPAKVI 109 (109)
T ss_pred ccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEe--eECCCCCEEEccccEeC
Confidence 4444555566788999999999999999999999999999999999 78999999999999864
No 65
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.66 E-value=2.4e-15 Score=138.04 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=127.0
Q ss_pred ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhccccccccccCCCCCCCCcccccccccccceeeecC----CCCceeC
Q 039842 1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATATATATTTKADAKSITPSADRVKWDYRGQRQIIPLG----QWVPKVA 76 (284)
Q Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~ 76 (284)
+++|+++.+.+|+|+.+. +|...+..+.+++..-....... +. ......+..++..+..+..++ .+.+.++
T Consensus 21 ~~~~~~a~~~~l~f~~~~--k~~~~l~~~~a~aviv~~~~~~~-~~--~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~ 95 (324)
T TIGR01853 21 VAPLEKAKANHITFLANP--KYLKHLKSSQAGAVIVSPDDQGL-PA--KCAALVVKDPYLAFAKVAELFDPPPKREAGIH 95 (324)
T ss_pred ccChhhCCCCeEEEEeCH--HHHHHHhhcCCcEEEecchhhcc-cC--cceEEEECCHHHHHHHHHHHhcccccccCCcC
Confidence 478999999999999998 99999988887777332221100 00 111122233343333322221 1112333
Q ss_pred CCcEEc------------CCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeee
Q 039842 77 VDAYVA------------PNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLI 144 (284)
Q Consensus 77 ~~~~I~------------~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~ 144 (284)
++++|+ |++.|++++.||++|.|+++++|.++ ++||++|.|+++++|+... .+|..+.+.
T Consensus 96 p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~---~~IG~~~~I~~~~~I~~~~-----~IG~~~~I~ 167 (324)
T TIGR01853 96 PTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDD---VVIGDGSRIHPNVVIYERV-----QLGKNVIIH 167 (324)
T ss_pred CCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCc---ceeCCCceECCCcEECCCC-----EECCCCEEC
Confidence 333333 33334444444455555555554322 5555555555555554221 222233222
Q ss_pred ccccc------CCCC--CccccccCCcceEECCCCEECCCcee-----------------------eccEECCCCEECCC
Q 039842 145 DLQMS------CPRS--NSLYIAWLPAETSIERFVTIGAYCSL-----------------------RSCTIEPECIIGQH 193 (284)
Q Consensus 145 ~~~~~------~~~~--~~~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------------~~v~Igd~v~IG~~ 193 (284)
..... .... .......+.+.++||++|+||++++| ++++||++|.|+++
T Consensus 168 ~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~ 247 (324)
T TIGR01853 168 SGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQ 247 (324)
T ss_pred CCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCc
Confidence 21110 0000 00011112246889999999988877 34566666666666
Q ss_pred cEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842 194 SILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241 (284)
Q Consensus 194 s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~ 241 (284)
+.|..+++||++|+|++++.|.++..|++++++.+. +.+.+++++..
T Consensus 248 ~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~-s~V~~~v~~~~ 294 (324)
T TIGR01853 248 VGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK-SGVTKSIPPPG 294 (324)
T ss_pred ceEcCccEECCCeEEccccccccCCEECCCCEEccC-CEeCCcCCCCc
Confidence 667777888888888999999999999999887665 77777777654
No 66
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.64 E-value=1.8e-15 Score=129.32 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=101.7
Q ss_pred EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842 92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV 171 (284)
Q Consensus 92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v 171 (284)
.|+++++|++++.|.|+ +.||++|.|+++|+|..+.. +++||++|
T Consensus 12 ~i~~~a~I~~~a~I~g~---V~IG~~~~I~~~avIrgd~~--------------------------------~i~Ig~~~ 56 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGD---VIVGAGVYIGPLASLRGDYG--------------------------------RLIVQAGA 56 (196)
T ss_pred ccCCCeEECCCCEEECc---eEECCCCEECCCCEEecCCc--------------------------------cEEECCCC
Confidence 46788889999998877 99999999999999976432 37899999
Q ss_pred EECCCceeec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC--CHHH---
Q 039842 172 TIGAYCSLRS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL--THEE--- 241 (284)
Q Consensus 172 ~Ig~~~~I~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~--~~~~--- 241 (284)
.||++|+|+. ++|++++.||.++.+ .+++||++|+||.+++|.++..|++++++. .-+.+.+.. ++..
T Consensus 57 ~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i-~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vg-ags~V~~~~~ip~~~~~~ 134 (196)
T PRK13627 57 NLQDGCIMHGYCDTDTIVGENGHIGHGAIL-HGCVIGRDALVGMNSVIMDGAVIGEESIVA-AMSFVKAGFQGEKRQLLM 134 (196)
T ss_pred EECCCCEEeCCCCCCCEECCCCEECCCcEE-eeEEECCCCEECcCCccCCCcEECCCCEEc-CCCEEeCCcCcCCCcEEE
Confidence 9999999854 789999999999876 668888888888888888778888877743 334444433 2221
Q ss_pred ---HhhhhhhHHHHHHHHHHHHhccccchHHHH
Q 039842 242 ---TLEIPKLAVAINDLSKSHFSEFLPYSTVYL 271 (284)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
...++.......+..+...++|..+.++|.
T Consensus 135 G~Pa~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 167 (196)
T PRK13627 135 GTPARAVRSVSDDELHWKRLNTKEYQDLVGRCH 167 (196)
T ss_pred ecCCEEeccCCHHHHHHHHhhHHHHHHHHHHHH
Confidence 122333333344443344455555666664
No 67
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.64 E-value=4.2e-15 Score=143.60 Aligned_cols=148 Identities=22% Similarity=0.284 Sum_probs=98.2
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeee----------
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLL---------- 143 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~---------- 143 (284)
.|++++.|++++.|.+++.||++|.|+++|.|. + .+||++|.|+++++|....-.....+|.+..+
T Consensus 272 ~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~---svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~ 347 (481)
T PRK14358 272 TLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-D---SVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGV 347 (481)
T ss_pred EECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-e---eEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCC
Confidence 467788888888888888888888888888874 4 56666666666665532111111112222211
Q ss_pred --ecccc-----cCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 144 --IDLQM-----SCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 144 --~~~~~-----~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
.+... ...+...+..... .+++||++|.||+++++. +++|||+|+||++|+|.++++||++++|
T Consensus 348 ~Ig~~~~i~~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i 426 (481)
T PRK14358 348 HIGNFVETKNARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFI 426 (481)
T ss_pred EECCCEEECCceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEE
Confidence 11100 0000011111111 458888999999888874 4799999999999999999999999999
Q ss_pred cCCCeeCCCCeeCCCCEEec
Q 039842 209 EAGSVLPPGRRIPTGELWAG 228 (284)
Q Consensus 209 ~a~s~V~~~~~I~~~~vv~G 228 (284)
+++++|. ++++++.++.+
T Consensus 427 ~~gs~v~--~~v~~~~~~~~ 444 (481)
T PRK14358 427 AAGSAVH--DDVPEGAMAVA 444 (481)
T ss_pred CCCCEEe--cccCCCCEEEe
Confidence 9999999 88999888775
No 68
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.63 E-value=3.8e-15 Score=123.73 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=48.7
Q ss_pred eeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCce
Q 039842 179 LRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPAR 232 (284)
Q Consensus 179 I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~ 232 (284)
.+.++|||+|+||++++|.++++||++|+|+++++|. .+||+++++.|+||+
T Consensus 111 ~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~--~dvp~~~~~~G~Par 162 (162)
T TIGR01172 111 KRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL--KDVPPGATVVGVPAR 162 (162)
T ss_pred CcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEEC--CCCCCCCEEEeecCC
Confidence 3457999999999999999999999999999999999 789999999999986
No 69
>PLN02296 carbonate dehydratase
Probab=99.63 E-value=2.6e-15 Score=133.98 Aligned_cols=145 Identities=22% Similarity=0.244 Sum_probs=106.6
Q ss_pred ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842 90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER 169 (284)
Q Consensus 90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~ 169 (284)
.-.|+++++|.+++.|.|+ +.||++|.|+++|+|..... +++||+
T Consensus 52 ~p~I~~~~~I~p~A~V~G~---V~IG~~~~I~~gavI~g~~~--------------------------------~I~IG~ 96 (269)
T PLN02296 52 APVVDKDAFVAPSASVIGD---VQVGRGSSIWYGCVLRGDVN--------------------------------SISVGS 96 (269)
T ss_pred CCccCCCCEECCCcEEEcc---eEECCCCEECCCCEEEcCCC--------------------------------ceEECC
Confidence 4458888888999998876 99999999999999975432 489999
Q ss_pred CCEECCCceee-----------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeecc--
Q 039842 170 FVTIGAYCSLR-----------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT-- 236 (284)
Q Consensus 170 ~v~Ig~~~~I~-----------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~-- 236 (284)
+|.|+++|+|+ +++||++|+||.+|+| .+|+||++|+|+.+++|.++..|++++++. ..+.+.+.
T Consensus 97 ~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~Ig-agSvV~~~~~ 174 (269)
T PLN02296 97 GTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVA-AGALVRQNTR 174 (269)
T ss_pred CCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEEC-CCCEEecCCE
Confidence 99999999995 6899999999999977 678999999999998888888888887764 22333333
Q ss_pred CCHHH------HhhhhhhHHHHHHHHHHHHhccccchHHHH
Q 039842 237 LTHEE------TLEIPKLAVAINDLSKSHFSEFLPYSTVYL 271 (284)
Q Consensus 237 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
+++.. ...++...+..........++|..++++|.
T Consensus 175 I~~~~~~~G~PA~~ir~~~~~~~~~~~~~a~~y~~l~~~~~ 215 (269)
T PLN02296 175 IPSGEVWAGNPAKFLRKLTEEEIAFISQSATNYSNLAQVHA 215 (269)
T ss_pred eCCCeEEeccCcEEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 233444445444444444555555666664
No 70
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.62 E-value=3.5e-15 Score=127.06 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=85.4
Q ss_pred eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF 170 (284)
Q Consensus 91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~ 170 (284)
-.|+++++|++++.|.|+ ++||++|.|+++|+|..+.. +++||++
T Consensus 9 p~i~~~~~I~~~a~I~G~---V~IG~~~~I~~~a~I~gd~g--------------------------------~i~Ig~~ 53 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLIGD---VILGKRCYVGPLASLRGDFG--------------------------------RIVLKEG 53 (192)
T ss_pred CcCCCCcEECCCCEEEee---EEECCCCEECCCcEEEccCC--------------------------------ceEECCC
Confidence 357899999999999877 99999999999999976422 4899999
Q ss_pred CEECCCceee-----ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842 171 VTIGAYCSLR-----SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA 227 (284)
Q Consensus 171 v~Ig~~~~I~-----~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~ 227 (284)
|.||++|+|+ +++||+++.||.++.| .+++|+++|+|+.++.+.++..|++++++.
T Consensus 54 t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I-~~siIg~~~~IG~ga~I~~g~~IG~~s~Vg 114 (192)
T TIGR02287 54 ANIQDNCVMHGFPGQDTVVEENGHVGHGAIL-HGCIVGRNALVGMNAVVMDGAVIGENSIVA 114 (192)
T ss_pred CEECCCeEEeccCCCCCeECCCCEECCCCEE-cCCEECCCCEECCCcccCCCeEECCCCEEc
Confidence 9999999994 5899999999999876 568888888888888887777777776654
No 71
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.62 E-value=3.4e-15 Score=124.63 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=51.3
Q ss_pred cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL 237 (284)
Q Consensus 182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~ 237 (284)
-+||++|.||+++.|.++.+||+|+.||++|+|. ++||++++++|.||+++...
T Consensus 120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sVVl--kdVP~~~tvvGvPArii~~~ 173 (194)
T COG1045 120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVL--KDVPPNATVVGVPARVIGRP 173 (194)
T ss_pred CccCCCeEECCCCEEEcceEECCCCEECCCceEc--cCCCCCceEecCcceEeccC
Confidence 5899999999999999999999999999999999 99999999999999999753
No 72
>PLN02472 uncharacterized protein
Probab=99.61 E-value=4.9e-15 Score=130.53 Aligned_cols=100 Identities=26% Similarity=0.328 Sum_probs=84.9
Q ss_pred EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842 92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV 171 (284)
Q Consensus 92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v 171 (284)
.|+.+++|.+++.|.|+ ++||++|.|+++++|..+.. .++||+++
T Consensus 61 ~i~~~~~I~p~a~i~G~---V~Ig~~a~I~~gavirgd~~--------------------------------~I~IG~~t 105 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQ---VTVWDGASVWNGAVLRGDLN--------------------------------KITVGFCS 105 (246)
T ss_pred ccCCCCEECCCCEEecC---EEECCCCEEcCCCEEecCCc--------------------------------ceEECCCC
Confidence 37888999999999877 99999999999999976532 48999999
Q ss_pred EECCCceee-----------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842 172 TIGAYCSLR-----------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA 227 (284)
Q Consensus 172 ~Ig~~~~I~-----------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~ 227 (284)
.|+++|+|+ .++||++|.||.+|.| .+|+|+++|.||.+++|.+++.|++++++.
T Consensus 106 ~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L-~~~~Igd~v~IG~~svI~~gavIg~~~~Ig 171 (246)
T PLN02472 106 NVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL-RSCTIEPECIIGQHSILMEGSLVETHSILE 171 (246)
T ss_pred EECCCCEEeecCccccCCCCCcEECCCCEECCCcEE-CCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 999999995 4899999999999987 578888888888888887777777776654
No 73
>PLN02357 serine acetyltransferase
Probab=99.61 E-value=5.9e-15 Score=134.97 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=77.6
Q ss_pred eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF 170 (284)
Q Consensus 91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~ 170 (284)
+.|++++.|++++.|. ....++||++|.||++|.|.. +++||..
T Consensus 227 vdI~p~a~IG~Gv~Id-h~~giVIGe~avIGdnV~I~~-----------------------------------gVtIGg~ 270 (360)
T PLN02357 227 VDIHPGAKIGQGILLD-HATGVVIGETAVVGNNVSILH-----------------------------------NVTLGGT 270 (360)
T ss_pred eeeCCCCEECCCeEEC-CCCceEECCCCEECCCCEEeC-----------------------------------CceecCc
Confidence 4455555555555553 223466777777777766642 1344432
Q ss_pred CEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842 171 VTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL 237 (284)
Q Consensus 171 v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~ 237 (284)
+.......++|||+|+||++++|.++++||++++|+++++|. .+||++++++|+||+++...
T Consensus 271 ---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~--~dVP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 271 ---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVL--KDVPPRTTAVGNPARLIGGK 332 (360)
T ss_pred ---cccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEEC--cccCCCcEEECCCeEEEccC
Confidence 111123457999999999999999999999999999999999 89999999999999999864
No 74
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.60 E-value=2.2e-14 Score=137.53 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=61.5
Q ss_pred ceEECCCCEECCCcee--------eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeec
Q 039842 164 ETSIERFVTIGAYCSL--------RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVR 235 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I--------~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~ 235 (284)
+++||+++.||+++.+ ++++|||++++|.++.|.++++||++++|+++++|. .++|++++++|..-....
T Consensus 373 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~--~~~~~~~~~~~~~~~~~~ 450 (456)
T PRK14356 373 DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVIT--KDVPDGSLAIARGRQKNL 450 (456)
T ss_pred CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEe--ccCCCCcEEEEecceeeh
Confidence 5788899999998765 368999999999999999999999999999999999 899999999988655433
No 75
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.60 E-value=1.9e-14 Score=137.96 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=98.7
Q ss_pred ceeCCCcEEcCCcEEecceEECCCCEECCCCEEecC----CC--------cEEECCCCEECCCCEEecCCCCCcccccce
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGD----LN--------KITVGFCSNVQERCVLHAAWNSPYRFVGFV 140 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~----~~--------~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~ 140 (284)
..+++++.|++++.|.+++.||++|.|++++.|.+. .. .+.||++|.|+++|.|.... .+|.+
T Consensus 266 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~-----~Ig~~ 340 (458)
T PRK14354 266 VEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGS-----VIGEE 340 (458)
T ss_pred cEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCC-----EEeCC
Confidence 346667777777777777888888888887777411 00 02334444444444433211 12222
Q ss_pred eeeecccc-----cCCCCCccccccCCcceEECCCCEECCCceee--------ccEECCCCEECCCcEEcCCCEECCCCE
Q 039842 141 SLLIDLQM-----SCPRSNSLYIAWLPAETSIERFVTIGAYCSLR--------SCTIEPECIIGQHSILMEGSMVETHAI 207 (284)
Q Consensus 141 ~~~~~~~~-----~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~--------~v~Igd~v~IG~~s~I~~gv~Ig~~~~ 207 (284)
+.+.+... ..++....+.... ++++||++|.||.++.+. +++|||+++||.+++|.++++||++++
T Consensus 341 ~~i~~~~~i~~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~ 419 (458)
T PRK14354 341 VKIGNFVEIKKSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAY 419 (458)
T ss_pred cEECCceEEeeeEECCCCEecceeee-cCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCE
Confidence 22211100 0111111111111 457888888888888763 589999999999999999999999999
Q ss_pred EcCCCeeCCCCeeCCCCEEeccCcee
Q 039842 208 LEAGSVLPPGRRIPTGELWAGNPARF 233 (284)
Q Consensus 208 I~a~s~V~~~~~I~~~~vv~G~pa~~ 233 (284)
|+++++|. ++||++++++|.|..+
T Consensus 420 v~~~~~v~--~~~~~~~~~~~~~~~~ 443 (458)
T PRK14354 420 IAAGSTIT--KDVPEDALAIARARQV 443 (458)
T ss_pred ECCCCEEC--CCCCCCCEEEecccee
Confidence 99999999 8999999999997765
No 76
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.59 E-value=4.9e-14 Score=117.61 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=22.1
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCe
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSV 213 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~ 213 (284)
++||++|+||.+|.|..++||++|+||+++.| .++.|+++++++++++
T Consensus 83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i-~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVV-DGVEIPPGRYVPAGAV 130 (167)
T ss_pred EEECCCCEECCCCEEECCEECCCCEEcCCCEE-eCCEeCCCCEECCCCE
Confidence 44444444444444444444444444444444 2344444444443333
No 77
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.58 E-value=3.8e-15 Score=125.96 Aligned_cols=55 Identities=25% Similarity=0.516 Sum_probs=52.9
Q ss_pred EECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842 183 TIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH 239 (284)
Q Consensus 183 ~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~ 239 (284)
.||||||||++++|.++++||+|++|++|++|. ++||++++.+|+|||.++..++
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~--kDVP~~~~AvGnPAklIg~~~e 256 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVL--KDVPPNTLAVGNPAKLIGKIDE 256 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccceEE--eccCCCceecCCchhhcccccc
Confidence 899999999999999999999999999999999 9999999999999999987665
No 78
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=4.4e-14 Score=117.29 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=74.3
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (284)
.+++++.|++++.|.+++.||++|.|++++.|. + ..||+++.|+.++.+.
T Consensus 37 ~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~---siig~~~~I~~~~~i~-------------------------- 86 (163)
T cd05636 37 IIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-N---SIIMDGTKVPHLNYVG-------------------------- 86 (163)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCcEEe-e---eEecCCCEeccCCEEe--------------------------
Confidence 455666666666666666666666666666663 3 5566666666666552
Q ss_pred CccccccCCcceEECCCCEECCCceee-------------------------ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 154 NSLYIAWLPAETSIERFVTIGAYCSLR-------------------------SCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~-------------------------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
+++|++++.|++++.+. ++.|||+++||.++.|.+++.|+++++|
T Consensus 87 ----------~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i 156 (163)
T cd05636 87 ----------DSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWV 156 (163)
T ss_pred ----------cCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEE
Confidence 36788999999888773 4789999999999999999999999999
Q ss_pred cCCCee
Q 039842 209 EAGSVL 214 (284)
Q Consensus 209 ~a~s~V 214 (284)
+++++|
T Consensus 157 ~agsvV 162 (163)
T cd05636 157 YPGCVV 162 (163)
T ss_pred CCCcEe
Confidence 998876
No 79
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.57 E-value=2e-14 Score=118.42 Aligned_cols=99 Identities=21% Similarity=0.345 Sum_probs=82.0
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
|.++++|+++++|.++ +.||++|.|+++|+|.... .+++||++|.
T Consensus 3 i~~~~~i~~~a~i~g~---v~IG~~~~I~~~~~i~~~~--------------------------------~~i~IG~~~~ 47 (155)
T cd04745 3 VDPSSFVHPTAVLIGD---VIIGKNCYIGPHASLRGDF--------------------------------GRIVIRDGAN 47 (155)
T ss_pred cCCCeEECCCCEEEcc---EEECCCCEECCCcEEeCCC--------------------------------CcEEECCCCE
Confidence 5778888999998776 9999999999999997532 2489999999
Q ss_pred ECCCcee-----eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842 173 IGAYCSL-----RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA 227 (284)
Q Consensus 173 Ig~~~~I-----~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~ 227 (284)
|+++|+| ++++||++|+|+.++.+ .++.||++|+|+++++|.++..|++++++.
T Consensus 48 Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig 106 (155)
T cd04745 48 VQDNCVIHGFPGQDTVLEENGHIGHGAIL-HGCTIGRNALVGMNAVVMDGAVIGEESIVG 106 (155)
T ss_pred ECCCCEEeecCCCCeEEcCCCEECCCcEE-ECCEECCCCEECCCCEEeCCCEECCCCEEC
Confidence 9999999 56999999999999876 468888888888887777777777776643
No 80
>PRK10191 putative acyl transferase; Provisional
Probab=99.56 E-value=4.3e-14 Score=115.06 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=49.0
Q ss_pred ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceee
Q 039842 181 SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFV 234 (284)
Q Consensus 181 ~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~ 234 (284)
.++|||+|+||+++.+.+++.||++++|+++++|. .++|+++++.|.||++.
T Consensus 92 ~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~--~dv~~~~~v~G~pA~~~ 143 (146)
T PRK10191 92 CPHIGNGVELGANVIILGDITIGNNVTVGAGSVVL--DSVPDNALVVGEKARVK 143 (146)
T ss_pred CCEECCCcEEcCCCEEeCCCEECCCCEECCCCEEC--CccCCCcEEEccCcEEE
Confidence 45999999999999999999999999999999999 89999999999999864
No 81
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.56 E-value=1.9e-14 Score=118.32 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=84.1
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
++++++|+++++|.|+ +.||++|.|+++++|.... .+++||+++.
T Consensus 2 ~~~~~~i~~~a~i~g~---v~ig~~~~I~~~~~I~~~~--------------------------------~~~~IG~~~~ 46 (153)
T cd04645 2 IDPSAFIAPNATVIGD---VTLGEGSSVWFGAVLRGDV--------------------------------NPIRIGERTN 46 (153)
T ss_pred ccCCeEECCCCEEEEe---EEECCCcEEcCCeEEECCC--------------------------------CceEECCCCE
Confidence 6889999999999876 9999999999999997532 2589999999
Q ss_pred ECCCceeec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842 173 IGAYCSLRS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 173 Ig~~~~I~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv 226 (284)
|+++|+|.. ++||++|+|+.++.+. ++.|+++++|++++.|..+..|++++.+
T Consensus 47 I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i 104 (153)
T cd04645 47 IQDGSVLHVDPGYPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSIV 104 (153)
T ss_pred ECCCcEEecCCCCCeEEcCCcEECCCcEEe-eeEECCCCEECCCCEEcCCCEECCCCEE
Confidence 999999976 6999999999999885 5888888888888888777777777664
No 82
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.55 E-value=1.2e-13 Score=114.96 Aligned_cols=107 Identities=12% Similarity=0.225 Sum_probs=91.5
Q ss_pred ceeCCCcEEcCCcEEe---cceEECCCCEECCCCEEecCC-------CcEEECCCCEECCCCEEecCCCCCcccccceee
Q 039842 73 PKVAVDAYVAPNVVLA---GQVTVCDGASVWPGSVLRGDL-------NKITVGFCSNVQERCVLHAAWNSPYRFVGFVSL 142 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~---~~v~IG~~~~I~~~~~I~g~~-------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~ 142 (284)
..++++++|++++.|. +.+.||++|.|++++.|..+. ..+.||+++.|..++.|.
T Consensus 18 v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~--------------- 82 (164)
T cd04646 18 VTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE--------------- 82 (164)
T ss_pred eEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE---------------
Confidence 3688999999999985 568999999999999997431 246788888888888774
Q ss_pred eecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842 143 LIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP 215 (284)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~ 215 (284)
+++||++|+||.+|.| .+++||++|+||++|+|.+++.|+++++++++..+.
T Consensus 83 ---------------------~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~ 135 (164)
T cd04646 83 ---------------------ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLR 135 (164)
T ss_pred ---------------------eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEE
Confidence 3899999999999999 679999999999999999999999999998887776
No 83
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.54 E-value=1.2e-13 Score=105.58 Aligned_cols=99 Identities=17% Similarity=0.308 Sum_probs=73.7
Q ss_pred eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF 170 (284)
Q Consensus 91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~ 170 (284)
+.|++++.|++++.|. +...+.||+++.|+++|.|.. ++.|+++
T Consensus 3 ~~i~~~~~ig~~~~i~-~~~~~~ig~~~~Ig~~~~i~~-----------------------------------~~~i~~~ 46 (101)
T cd03354 3 IDIHPGAKIGPGLFID-HGTGIVIGETAVIGDNCTIYQ-----------------------------------GVTLGGK 46 (101)
T ss_pred eEeCCCCEECCCEEEC-CCCeEEECCCCEECCCCEEcC-----------------------------------CCEECCC
Confidence 4556666666666663 323466777777777766531 1334433
Q ss_pred CEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccC
Q 039842 171 VTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNP 230 (284)
Q Consensus 171 v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~p 230 (284)
+.+ ..+.+++||++|+|+.++.+.++++||++|+|+++++|. ..+|++.+++|+|
T Consensus 47 ~~~---~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~--~~~~~~~~~~G~P 101 (101)
T cd03354 47 GKG---GGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT--KDVPANSTVVGVP 101 (101)
T ss_pred ccC---CcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEEC--cccCCCCEEEeCC
Confidence 332 136888999999999999999999999999999999999 6799999999998
No 84
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.51 E-value=2e-13 Score=130.69 Aligned_cols=152 Identities=14% Similarity=0.203 Sum_probs=87.5
Q ss_pred EEcCCc-EEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc----cCCCCC
Q 039842 80 YVAPNV-VLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM----SCPRSN 154 (284)
Q Consensus 80 ~I~~~a-~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ 154 (284)
++++++ .+.+++.||+++.|++++.|.++ ++||++|.|++++.|... .+|.++.+..... ......
T Consensus 251 ~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~~------~I~~~~~I~~~~i~~~~ig~~~~ 321 (450)
T PRK14360 251 FIDPASCTISETVELGPDVIIEPQTHLRGN---TVIGSGCRIGPGSLIENS------QIGENVTVLYSVVSDSQIGDGVK 321 (450)
T ss_pred EecCCeEEEeCCEEECCCCEECCCCEEeCC---cEECCCCEECCCcEEEEE------EEcCCCEEeeeEEeeccccCCcE
Confidence 455554 35666666666666666666543 566666666666655311 0111111100000 000000
Q ss_pred ccccccCCcceEECCCCEECCCcee-----------------eccEECCCCEECCCcEEcC-------CCEECCCCEEcC
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSL-----------------RSCTIEPECIIGQHSILME-------GSMVETHAILEA 210 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a 210 (284)
.+.......+++||++|.|+.++.+ ..+.||++|.||+++++.. +++||++|+||+
T Consensus 322 I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~ 401 (450)
T PRK14360 322 IGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGA 401 (450)
T ss_pred ECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCC
Confidence 0001112223555555555555444 3456888888888887743 789999999999
Q ss_pred CCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842 211 GSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241 (284)
Q Consensus 211 ~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~ 241 (284)
+++|.++..|+++++ +|..+.+.+++++..
T Consensus 402 ~~~i~~~~~ig~~~~-v~~~~~v~~~~~~~~ 431 (450)
T PRK14360 402 NSVLVAPITLGEDVT-VAAGSTITKDVPDNS 431 (450)
T ss_pred CCEEeCCcEECCCCE-ECCCCEECccCCCCC
Confidence 999999999999877 456677777776653
No 85
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.51 E-value=3.7e-13 Score=118.97 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=74.9
Q ss_pred eeCCCcEEcCCcEEecceEE-----CCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842 74 KVAVDAYVAPNVVLAGQVTV-----CDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM 148 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~I-----G~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~ 148 (284)
++.+++.|.+++.|+.++.| ..+++|++++.|... ++||.+|.||++|.|.++.... |
T Consensus 102 rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~---a~IG~~v~IG~nv~I~~g~~Ig----G---------- 164 (269)
T TIGR00965 102 RVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTW---ATVGSCAQIGKNVHLSGGVGIG----G---------- 164 (269)
T ss_pred EECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCC---cEECCCCEECCCCEEcCCcccC----C----------
Confidence 44444444444444444433 234555566655432 5566666666666665443210 0
Q ss_pred cCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCC-------EEcCCCeeCCC
Q 039842 149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHA-------ILEAGSVLPPG 217 (284)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~-------~I~a~s~V~~~ 217 (284)
...+...++++||++|+||++|.| .+++||++++||++++|.++++|.+.. .|.++++|.+|
T Consensus 165 -------~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g 234 (269)
T TIGR00965 165 -------VLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSG 234 (269)
T ss_pred -------CcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecC
Confidence 000112356999999999999999 689999999999999999999999864 34555555544
No 86
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.50 E-value=2.4e-13 Score=109.49 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=68.4
Q ss_pred cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842 79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI 158 (284)
Q Consensus 79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 158 (284)
+.|.|.+++...+.||++++|.+++++..+ +.||++|.|.. .|.
T Consensus 2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~---a~IG~~~iIn~--~ig------------------------------- 45 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFN---AGTLGNCMVEG--RIS------------------------------- 45 (147)
T ss_pred eEecCCCEECCCCEECCCcEECCCCEEccC---CEECCCeEECC--ccc-------------------------------
Confidence 455666666667777777777777776544 56666666541 111
Q ss_pred ccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842 159 AWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI 220 (284)
Q Consensus 159 ~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I 220 (284)
.+++||++|.||++|.|. ++.||++|+||.+++| ++.||++|+|+++++|.+++.|
T Consensus 46 ----~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 46 ----SGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred ----CCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence 124555555555555552 3889999999999999 6999999999999998866655
No 87
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.50 E-value=1.6e-13 Score=119.59 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=86.9
Q ss_pred CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842 76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS 155 (284)
Q Consensus 76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (284)
.+++.|.|++++..+++|+++++|.+++.|.-+ ..++++|.|.-+++++.
T Consensus 106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNig---A~~~~gtMVd~~as~G~--------------------------- 155 (271)
T COG2171 106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVNIG---AGTGEGTMVDGRASVGS--------------------------- 155 (271)
T ss_pred cCceeecCccEEeeccEECCCcEEcccceEEEC---cccCcceEEeeeeeeec---------------------------
Confidence 445888888888888888888888887777533 45666666666666542
Q ss_pred cccccCCcceEECCCCEECCCceee---------ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842 156 LYIAWLPAETSIERFVTIGAYCSLR---------SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI 220 (284)
Q Consensus 156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~---------~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I 220 (284)
.++||++|.||.++.|. ++.|||||+||++|.+..|+.+|++|+|++|+.|++++.+
T Consensus 156 --------~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 156 --------CAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred --------cEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 38899999999999983 5899999999999999999999999999999999955543
No 88
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.49 E-value=3.5e-13 Score=128.83 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=88.9
Q ss_pred cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842 85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE 164 (284)
Q Consensus 85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+.+.+++.||+++.|++++.|.++ ++||++|.|+++|+|....-.....++.++.+.+.. ...+...+.......+
T Consensus 256 ~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~-ig~~~~Ig~~~~i~~~ 331 (451)
T TIGR01173 256 FDIRGTVEIGRDVEIDPNVILEGK---VKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSE-IGEGCDVGPFARLRPG 331 (451)
T ss_pred EEECCccEECCCCEEcCCeEEeCc---eEECCCCEECCCcEEeeeEecCCCEEeeecEEeccc-ccCCcEECCeeEECCC
Confidence 345666677777777777777544 677777777777766532221222222222221110 0001011111112223
Q ss_pred eEECCCCEECCCcee-----------------eccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCee
Q 039842 165 TSIERFVTIGAYCSL-----------------RSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRI 220 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I-----------------~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I 220 (284)
++||++|.|++++.+ .++.||++|+||+++++.. +++||++|+||.+++|.++..|
T Consensus 332 ~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~i 411 (451)
T TIGR01173 332 SVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKV 411 (451)
T ss_pred CEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEE
Confidence 455555555554433 3467777778888777754 5899999999999999999999
Q ss_pred CCCCEEeccCceeeccCCHHH
Q 039842 221 PTGELWAGNPARFVRTLTHEE 241 (284)
Q Consensus 221 ~~~~vv~G~pa~~~~~~~~~~ 241 (284)
++++++. ..+.+.+++++..
T Consensus 412 g~~~~i~-~g~~v~~~v~~~~ 431 (451)
T TIGR01173 412 GDGATIA-AGSTVTKDVPEGA 431 (451)
T ss_pred CCCCEEc-cCCEECccCCCCc
Confidence 9998854 4577777777654
No 89
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=9.9e-14 Score=132.54 Aligned_cols=105 Identities=22% Similarity=0.367 Sum_probs=93.9
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
-++.+.+.+.+.++.++.||.++.|+.++.|. + .+||+||.||.||+|.
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-N---SVIG~~c~IgsN~~I~--------------------------- 366 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-N---SVIGANCRIGSNVRIK--------------------------- 366 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeee-c---ceecCCCEecCceEEe---------------------------
Confidence 36778888889999999999999999999996 6 8999999999999995
Q ss_pred ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR 219 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~ 219 (284)
++.||++|.||+||.|+.+.|+|+|.|++++.+.+||+||.+++++.+-++..++.
T Consensus 367 ---------~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~ 422 (673)
T KOG1461|consen 367 ---------NSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSK 422 (673)
T ss_pred ---------eeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccccc
Confidence 47999999999999999999999999999999999998888888888777776633
No 90
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.48 E-value=3.4e-13 Score=118.13 Aligned_cols=109 Identities=18% Similarity=0.276 Sum_probs=91.7
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
++.++.|++++.|.+. +.||++|.|++++.|.. +++||++|.
T Consensus 83 vg~~~~I~~~a~I~g~---v~IG~~~~I~~~~~I~~-----------------------------------~~~IG~~~~ 124 (231)
T TIGR03532 83 KNINARIEPGAIIRDQ---VIIGDNAVIMMGAVINI-----------------------------------GAEIGEGTM 124 (231)
T ss_pred cccccEECCCCEEeCC---eEECCCCEEecCcccCC-----------------------------------CeEECCCCE
Confidence 6778888888888654 89999999999998853 489999999
Q ss_pred ECCCceee-ccEECCCCEECCCcEEcC--------CCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842 173 IGAYCSLR-SCTIEPECIIGQHSILME--------GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240 (284)
Q Consensus 173 Ig~~~~I~-~v~Igd~v~IG~~s~I~~--------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~ 240 (284)
|+.++.|. .++||++|+||.++.|.+ ++.||++|+|+++++|.+++.|++++++ |..+.+.+++++.
T Consensus 125 I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~I-gagsvV~~di~~~ 200 (231)
T TIGR03532 125 IDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVV-AAGAIVTEDVPPN 200 (231)
T ss_pred EccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEE-CCCCEEccccCCC
Confidence 99999994 899999999999999974 6899999999999999999999998885 4556666665544
No 91
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.48 E-value=1.2e-12 Score=111.59 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=41.9
Q ss_pred ccEECCCCEECCCcEEc-------CCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842 181 SCTIEPECIIGQHSILM-------EGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240 (284)
Q Consensus 181 ~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~ 240 (284)
.+.||++|.||+++.+. .+++||++++|+.++++.++..|++++++. .-+.+.+++++.
T Consensus 119 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~-~gs~V~~~v~~~ 184 (193)
T cd03353 119 DAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIA-AGSTITKDVPPG 184 (193)
T ss_pred ccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEEC-CCCEEccccCCC
Confidence 45666777777776653 257888899999998888888888888854 445566665553
No 92
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.48 E-value=2e-13 Score=112.48 Aligned_cols=99 Identities=21% Similarity=0.345 Sum_probs=85.4
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
++++++|++++.|.++ +.||++|.|+++++|.... .+++||+++.
T Consensus 3 ~~~~~~i~~~~~i~~~---v~iG~~~~I~~~a~I~~~~--------------------------------~~i~Ig~~~~ 47 (154)
T cd04650 3 ISPKAYVHPTSYVIGD---VVIGELTSVWHYAVIRGDN--------------------------------DSIYIGKYSN 47 (154)
T ss_pred cCCCeEECCCCEEEee---EEECCCCEEcCCeEEEcCC--------------------------------CcEEECCCCE
Confidence 6788899999999866 9999999999999997531 2489999999
Q ss_pred ECCCceeec-----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842 173 IGAYCSLRS-----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA 227 (284)
Q Consensus 173 Ig~~~~I~~-----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~ 227 (284)
|+++|.|.. ++||+++.|+.++.+ .+++||++|+|+.++.+.++..|++++++.
T Consensus 48 Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg 106 (154)
T cd04650 48 VQENVSIHTDHGYPTEIGDYVTIGHNAVV-HGAKVGNYVIVGMGAILLNGAKIGDHVIIG 106 (154)
T ss_pred ECCCCEEEeCCCCCeEECCCCEECCCcEE-ECcEECCCCEEcCCCEEeCCCEECCCCEEC
Confidence 999999975 899999999999988 678899999988888888788888887765
No 93
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.48 E-value=6.9e-13 Score=128.24 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=59.3
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccC
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTL 237 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~ 237 (284)
++|++++.|++.+.+.+++||++|+||+++++.. +++||++|+|+.+++|.++..|+++++ .|..+.+.+++
T Consensus 358 ~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~-igags~v~~~v 436 (482)
T PRK14352 358 ATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAY-TGAGTVIREDV 436 (482)
T ss_pred cEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcE-ECCCCEEcCCC
Confidence 4555666666666667789999999999998863 589999999999999999999999887 45556666776
Q ss_pred CHHH
Q 039842 238 THEE 241 (284)
Q Consensus 238 ~~~~ 241 (284)
++..
T Consensus 437 ~~~~ 440 (482)
T PRK14352 437 PPGA 440 (482)
T ss_pred CCCc
Confidence 6554
No 94
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.47 E-value=8.8e-13 Score=126.70 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=94.1
Q ss_pred cEEcCCc-EEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842 79 AYVAPNV-VLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY 157 (284)
Q Consensus 79 ~~I~~~a-~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 157 (284)
..+++.+ .|++++.||+++.|++++.|.++ ++||++|.|+++|+|....-.....++.++.+.+.. ..+....+.
T Consensus 256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~-i~~~~~ig~ 331 (459)
T PRK14355 256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGD---TRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV-VGDDVAIGP 331 (459)
T ss_pred EEECCCceEECCCeEEcCCCEEeCCcEEeCC---CEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCE-ECCCCEECC
Confidence 4666664 46777777777777777777644 677777777777777532111222222222222110 000101111
Q ss_pred cccCCcceEECCCCEECCCce-----------------eeccEECCCCEECCCcEEc-------CCCEECCCCEEcCCCe
Q 039842 158 IAWLPAETSIERFVTIGAYCS-----------------LRSCTIEPECIIGQHSILM-------EGSMVETHAILEAGSV 213 (284)
Q Consensus 158 ~~~~~~~v~Ig~~v~Ig~~~~-----------------I~~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a~s~ 213 (284)
......+++|++++.||.++. +..+.||++|.||+++++. .++.||++|+|+++++
T Consensus 332 ~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~ 411 (459)
T PRK14355 332 MAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQ 411 (459)
T ss_pred CCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCE
Confidence 111223455555555555432 2346888999999988763 3688999999999999
Q ss_pred eCCCCeeCCCCEEeccCceeeccCCHH
Q 039842 214 LPPGRRIPTGELWAGNPARFVRTLTHE 240 (284)
Q Consensus 214 V~~~~~I~~~~vv~G~pa~~~~~~~~~ 240 (284)
|.++..|++++++.+ .+.+.+++++.
T Consensus 412 i~~~~~ig~~~~i~a-~s~v~~~v~~~ 437 (459)
T PRK14355 412 FVAPVTVGRNSLIAA-GTTVTKDVPPD 437 (459)
T ss_pred EeCCcEECCCCEECC-CCEEcccCCCC
Confidence 999999999988653 35555666554
No 95
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.46 E-value=1.3e-12 Score=116.33 Aligned_cols=118 Identities=27% Similarity=0.316 Sum_probs=79.2
Q ss_pred CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842 76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS 155 (284)
Q Consensus 76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (284)
+++++|++++.|. ...++.+++|++++.|... +.||++|.||++|.|.........
T Consensus 113 ~~ga~Ig~gavI~-p~~V~iGa~Ig~gt~I~~~---a~IG~~a~IG~nv~I~~gv~I~g~-------------------- 168 (272)
T PRK11830 113 RRGAYIAPNVVLM-PSYVNIGAYVDEGTMVDTW---ATVGSCAQIGKNVHLSGGVGIGGV-------------------- 168 (272)
T ss_pred CCCCEECCCcEEE-EEEECCCCEECCCcEEccc---cEECCCCEECCCcEECCCccCCCC--------------------
Confidence 4444444444444 2344455666666666433 667777777777777654431100
Q ss_pred cccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCC-------EEcCCCeeCCCC
Q 039842 156 LYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHA-------ILEAGSVLPPGR 218 (284)
Q Consensus 156 ~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~-------~I~a~s~V~~~~ 218 (284)
.......+++||++|+||.+|.| .+++||++|.||++++|.+++.|++.+ .|.++++|.+++
T Consensus 169 -~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g~ 238 (272)
T PRK11830 169 -LEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPGS 238 (272)
T ss_pred -ccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecCc
Confidence 00012235999999999999998 789999999999999999999999865 467777776553
No 96
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=5.1e-13 Score=129.14 Aligned_cols=157 Identities=19% Similarity=0.195 Sum_probs=95.5
Q ss_pred EcCCcE-EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccc
Q 039842 81 VAPNVV-LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIA 159 (284)
Q Consensus 81 I~~~a~-i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 159 (284)
++|.+. +.+++.||++|.|+++++|.+. ++||++|.|+++|+|+...-.....++.++.+.+. ....+.......
T Consensus 260 ~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~---v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~-~ig~~~~ig~~~ 335 (481)
T PRK14358 260 QDPGTILIEDTVTLGRDVTIEPGVLLRGQ---TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGA-EVGAGSDVGPFA 335 (481)
T ss_pred ecCCeeeccCCcEECCCCEEeCCcEEeCC---cEECCCCEECCCCEEeeeEECCCCEEeecceecCC-eEeCceEECCcc
Confidence 344444 3567777777777777777654 66777777777766643221112222222222110 000000111111
Q ss_pred cCCcceEECCCCEECCCce-----------------eeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeC
Q 039842 160 WLPAETSIERFVTIGAYCS-----------------LRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLP 215 (284)
Q Consensus 160 ~~~~~v~Ig~~v~Ig~~~~-----------------I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~ 215 (284)
....++.||+++.|+.++. +..++||++|.||.++++.. ++.||++++|+++++|.
T Consensus 336 ~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~ 415 (481)
T PRK14358 336 RLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLI 415 (481)
T ss_pred EEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEc
Confidence 1223456666666666443 35688999999999998854 58999999999999999
Q ss_pred CCCeeCCCCEEeccCceeeccCCHHHH
Q 039842 216 PGRRIPTGELWAGNPARFVRTLTHEET 242 (284)
Q Consensus 216 ~~~~I~~~~vv~G~pa~~~~~~~~~~~ 242 (284)
++..|++++++. ..+.+.+++++...
T Consensus 416 ~~~~Ig~~~~i~-~gs~v~~~v~~~~~ 441 (481)
T PRK14358 416 APRVVGDAAFIA-AGSAVHDDVPEGAM 441 (481)
T ss_pred CCcEECCCCEEC-CCCEEecccCCCCE
Confidence 999999999865 34566666665543
No 97
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.45 E-value=3.9e-12 Score=105.48 Aligned_cols=101 Identities=19% Similarity=0.377 Sum_probs=71.2
Q ss_pred CceeCCCcEEcCCcEEecc---eEECCCCEECCCCEEecCC---------CcEEECCCCEECCCCEEecCCCCCcccccc
Q 039842 72 VPKVAVDAYVAPNVVLAGQ---VTVCDGASVWPGSVLRGDL---------NKITVGFCSNVQERCVLHAAWNSPYRFVGF 139 (284)
Q Consensus 72 ~~~i~~~~~I~~~a~i~~~---v~IG~~~~I~~~~~I~g~~---------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~ 139 (284)
...+++.++|++++.|.++ +.||++|.|+++++|.+.. .+++||+++.|++++++.
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~------------ 88 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN------------ 88 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE------------
Confidence 3468999999999999875 7999999999999997531 357899999999999884
Q ss_pred eeeeecccccCCCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 140 VSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
+++|++++.||++++| .+++|+++++|+.++.|.+++.|++++++
T Consensus 89 ------------------------~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv 134 (161)
T cd03359 89 ------------------------AAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVV 134 (161)
T ss_pred ------------------------eeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEE
Confidence 2678888877777654 23445555544444444444444444433
No 98
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.41 E-value=1.8e-12 Score=115.99 Aligned_cols=54 Identities=19% Similarity=0.440 Sum_probs=43.8
Q ss_pred eEECCCCEECCCcee-----ec----cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842 165 TSIERFVTIGAYCSL-----RS----CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI 220 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I-----~~----v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I 220 (284)
++||++|.||.+|.| .+ +.||++|+||++|.| ++.||++|+|++|++|.+++.|
T Consensus 225 avIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 225 VMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred CEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence 455555555555555 33 899999999999999 9999999999999999987766
No 99
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.41 E-value=4.3e-12 Score=109.18 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=55.3
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
+++.+.|++++.|. ++.||+++.|+++|.|. + ++||++|.|+.++.|.
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~---s~IG~~s~I~~~~~i~--------------------------- 52 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-E---VALGDYSYVMRDCDII--------------------------- 52 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-C---CEECCCCEECCCcEEe---------------------------
Confidence 56778999999995 58999999999999995 4 8899999999999884
Q ss_pred ccccccCCcceEECCCCEECCCceee
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLR 180 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~ 180 (284)
++.||++|.|++++.|.
T Consensus 53 ---------~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 53 ---------YTTIGKFCSIAAMVRIN 69 (204)
T ss_pred ---------eeEECCCCEECCCCEEC
Confidence 37888999988888774
No 100
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=3.6e-12 Score=122.35 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=49.5
Q ss_pred eeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842 179 LRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241 (284)
Q Consensus 179 I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~ 241 (284)
+.++.||++|.||+++++.. +++|||+|+||.+++|.++..|++++++. ..+.+.+++++..
T Consensus 367 ~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~-~gs~v~~~v~~~~ 435 (456)
T PRK09451 367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIG-AGTTVTRDVAENE 435 (456)
T ss_pred ccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEEC-CCCEEccccCCCC
Confidence 34578889999999987743 48899999999999999999999998854 4577777776654
No 101
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.40 E-value=2.9e-12 Score=114.04 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=76.8
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcE-EECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKI-TVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v-~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (284)
+..++.|.+..++.-+..||++++|.++++|..+ + +||++ +| ++.|
T Consensus 150 vp~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~n---AgtIG~~-iI--~g~I--------------------------- 196 (319)
T TIGR03535 150 VPTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFN---AGTLGAS-MV--EGRI--------------------------- 196 (319)
T ss_pred CCCccEECCCceeeeccEECCCCEEcCCCEEccC---ceEecCc-eE--EEEE---------------------------
Confidence 3455666666666666666666666666666433 3 45553 44 2333
Q ss_pred CccccccCCcceEECCCCEECCCceeec---------cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842 154 NSLYIAWLPAETSIERFVTIGAYCSLRS---------CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI 220 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~---------v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I 220 (284)
.++++||++|.|+.++.|.+ +.||++|+||++|.| ++.||++|+|++|++|..++.|
T Consensus 197 --------~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 197 --------SAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred --------ccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence 23589999999999999643 899999999999999 8999999999999999977766
No 102
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.39 E-value=4.5e-12 Score=121.31 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=86.0
Q ss_pred EEcCC-cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc----ccCCCCC
Q 039842 80 YVAPN-VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ----MSCPRSN 154 (284)
Q Consensus 80 ~I~~~-a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~----~~~~~~~ 154 (284)
.++|+ +.|+++++||+++.|++++.|.++ +.||++|.|+++|.|... .+|.++.+.... .......
T Consensus 244 ~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~---~~ig~~~~I~~~~~i~~s------~Ig~~~~I~~~~v~~sii~~~~~ 314 (448)
T PRK14357 244 ILDPNTTYIHYDVEIGMDTIIYPMTFIEGK---TRIGEDCEIGPMTRIVDC------EIGNNVKIIRSECEKSVIEDDVS 314 (448)
T ss_pred EeCCCcEEEccceEECCCcEEcCCcEEEee---eEECCCcEECCCceeccc------EECCCCEEeeeEEEEEEEeCCcE
Confidence 34554 356666677777777777776544 666666666666654311 122222221000 0000000
Q ss_pred ccccccCCcceEECCCCEECCCce-----------------eeccEECCCCEECCCcEEc-------CCCEECCCCEEcC
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCS-----------------LRSCTIEPECIIGQHSILM-------EGSMVETHAILEA 210 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~-----------------I~~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a 210 (284)
.........+++||++|.||+++. +..++||++|+||+++++. .+++||++++|++
T Consensus 315 ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~ 394 (448)
T PRK14357 315 VGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGS 394 (448)
T ss_pred ECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECC
Confidence 000011111244444444444433 3356888888888888764 3689999999999
Q ss_pred CCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842 211 GSVLPPGRRIPTGELWAGNPARFVRTLTHE 240 (284)
Q Consensus 211 ~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~ 240 (284)
++.|.++..|++++++. .-+.+.+++++.
T Consensus 395 ~~~i~~gv~Ig~~~~i~-ag~~v~~~v~~~ 423 (448)
T PRK14357 395 NSSLVAPVRIGKGALIG-AGSVITEDVPPY 423 (448)
T ss_pred CCEEeCCcEECCCCEEc-CCCEECCcCCCC
Confidence 99999999999998854 446666766654
No 103
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.38 E-value=2.3e-12 Score=129.23 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=85.0
Q ss_pred cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842 89 GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE 168 (284)
Q Consensus 89 ~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig 168 (284)
-+++||+++.|++ ..+. ..+.++||+||.|+++|.|.+.. +.
T Consensus 111 lGa~IG~~v~I~~-~~~~-~~~li~IG~~~~I~~~v~l~~~~------------------------------------~~ 152 (695)
T TIGR02353 111 LGAKIGKGVDIGS-LPPV-CTDLLTIGAGTIVRKEVMLLGYR------------------------------------AE 152 (695)
T ss_pred cCCEECCCCEEEe-eecc-cCCceEECCCCEECCCCEEEccc------------------------------------CC
Confidence 3667888888877 3332 34459999999999999986421 11
Q ss_pred CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeecc
Q 039842 169 RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRT 236 (284)
Q Consensus 169 ~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~ 236 (284)
+ ....+.+++||+||+||++|+|.+|++|||+++|++++.|..+++||+++++.|+|++++.+
T Consensus 153 ~-----~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~ 215 (695)
T TIGR02353 153 R-----GRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA 215 (695)
T ss_pred C-----CceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence 1 11245678999999999999999999999999999999999888999999999999999866
No 104
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.38 E-value=8e-12 Score=119.86 Aligned_cols=153 Identities=13% Similarity=0.202 Sum_probs=91.3
Q ss_pred cEEcCC-cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccc----ccCCCC
Q 039842 79 AYVAPN-VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQ----MSCPRS 153 (284)
Q Consensus 79 ~~I~~~-a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~----~~~~~~ 153 (284)
.+|+|. +.|++++.||+++.|++++.|.++ +.||++|.|++++.|.... +|.++.+.... ....+.
T Consensus 253 ~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~------ig~~~~I~~~~i~~~~ig~~~ 323 (458)
T PRK14354 253 TIIDPESTYIDADVEIGSDTVIEPGVVIKGN---TVIGEDCVIGPGSRIVDST------IGDGVTITNSVIEESKVGDNV 323 (458)
T ss_pred EEeCCCeEEECCCcEECCCCEEeCCeEEecc---eEECCCCEECCCcEEeccE------ECCCCEEEEEEEeCCEECCCc
Confidence 346664 456777778888888888877655 7788888887777775321 22222221100 000010
Q ss_pred CccccccCCcceEECCCCEECCCcee-----------------eccEECCCCEECCCcEEcC-------CCEECCCCEEc
Q 039842 154 NSLYIAWLPAETSIERFVTIGAYCSL-----------------RSCTIEPECIIGQHSILME-------GSMVETHAILE 209 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I-----------------~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~ 209 (284)
..+.......+++||++|.|++++.| ..++||++|.||+++.+.. +++||++++++
T Consensus 324 ~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig 403 (458)
T PRK14354 324 TVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIG 403 (458)
T ss_pred EECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEc
Confidence 11111112223445555555544444 3456666777777766543 58889999999
Q ss_pred CCCeeCCCCeeCCCCEEeccCceeeccCCHHH
Q 039842 210 AGSVLPPGRRIPTGELWAGNPARFVRTLTHEE 241 (284)
Q Consensus 210 a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~~ 241 (284)
.++.|.++..|++++++ |.-+.+.+++++..
T Consensus 404 ~~s~i~~~~~ig~~~~v-~~~~~v~~~~~~~~ 434 (458)
T PRK14354 404 CNSNLVAPVTVGDNAYI-AAGSTITKDVPEDA 434 (458)
T ss_pred cCCEEeCCcEECCCCEE-CCCCEECCCCCCCC
Confidence 99999999999999885 45566777777654
No 105
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.38 E-value=2.6e-12 Score=122.25 Aligned_cols=152 Identities=13% Similarity=0.197 Sum_probs=92.3
Q ss_pred CCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCc
Q 039842 76 AVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNS 155 (284)
Q Consensus 76 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (284)
.++.++.+++.|.+++.||+++.|++++.|. + ++||++|.|++ ++|......+...++.++.+.+.. .
T Consensus 251 ~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~---~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~-------i 318 (430)
T PRK14359 251 PETIYIESGVEFEGECELEEGVRILGKSKIE-N---SHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTH-------I 318 (430)
T ss_pred CCeeEECCCcEEcCceEECCCCEECCCeEEE-e---eEECCCCEEec-cEEeCCEECCCCEECCCcEEeccE-------E
Confidence 4456667777777777777777777777664 4 56666666544 111110000000111111111000 0
Q ss_pred cccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcC-------CCEECCCCEEcCCCeeCCCCeeCCCCEEec
Q 039842 156 LYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILME-------GSMVETHAILEAGSVLPPGRRIPTGELWAG 228 (284)
Q Consensus 156 ~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~-------gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G 228 (284)
+... .-.+.+| +++.||+.+.|+.++||++|.||.++++.. +++||++|+||+++.|.++..|++++++ |
T Consensus 319 g~~~-~i~~~~~-~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i-~ 395 (430)
T PRK14359 319 GNFV-ETKNAKL-NGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLI-A 395 (430)
T ss_pred cCcE-EEcccEe-ccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEE-C
Confidence 0000 0001233 455777888889999999999999998864 3899999999999999999999999885 4
Q ss_pred cCceeeccCCHHHH
Q 039842 229 NPARFVRTLTHEET 242 (284)
Q Consensus 229 ~pa~~~~~~~~~~~ 242 (284)
..+.+.+++++...
T Consensus 396 ~g~~v~~~v~~~~~ 409 (430)
T PRK14359 396 AGSTVTKDVPKGSL 409 (430)
T ss_pred CCCEEccccCCCcE
Confidence 55777777766543
No 106
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.38 E-value=8.2e-12 Score=119.77 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=93.4
Q ss_pred eCCCcEEcCCcE------EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc
Q 039842 75 VAVDAYVAPNVV------LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM 148 (284)
Q Consensus 75 i~~~~~I~~~a~------i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~ 148 (284)
+++++.|++++. |.+++.||++|.|+++|.|. + ++||++|.|++++.|....-.....+|.++.+.....
T Consensus 266 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~---~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ 341 (456)
T PRK14356 266 IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-D---AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAV 341 (456)
T ss_pred ECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-e---eEECCCCEEeeeEEEcccceecccEECCceEECCCCE
Confidence 444445554444 44566777777777777774 3 6777777777766664332222223333332221110
Q ss_pred cCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc-------CCCEECCCCEEcCCCeeCCCCeeC
Q 039842 149 SCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM-------EGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~-------~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
...+...+..... .+++|++++.+++.+.+..++||+++.||+++++. .++.||++++++.++.|.++..|+
T Consensus 342 ig~~~~ig~~~~i-~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig 420 (456)
T PRK14356 342 LEEGARVGNFVEM-KKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIG 420 (456)
T ss_pred ECCCCEecCCcee-eeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEEC
Confidence 0000000000000 12344555555555555567888888888887642 358999999999999998889999
Q ss_pred CCCEEeccCceeeccCCHHH
Q 039842 222 TGELWAGNPARFVRTLTHEE 241 (284)
Q Consensus 222 ~~~vv~G~pa~~~~~~~~~~ 241 (284)
+++++. ..+.+.+++++..
T Consensus 421 ~~~~i~-~~~~v~~~~~~~~ 439 (456)
T PRK14356 421 DGALVG-AGSVITKDVPDGS 439 (456)
T ss_pred CCCEEc-CCCEEeccCCCCc
Confidence 988854 4466667776654
No 107
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.37 E-value=7.9e-12 Score=105.15 Aligned_cols=104 Identities=19% Similarity=0.307 Sum_probs=79.9
Q ss_pred CEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCC
Q 039842 97 ASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAY 176 (284)
Q Consensus 97 ~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~ 176 (284)
+.+++.+.+.++ +.||++|.|+++|+|.. +++||++|.|+.+
T Consensus 85 ~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----------------------------------~~~ig~~~~i~~~ 126 (197)
T cd03360 85 TLIHPSAVVSPS---AVIGEGCVIMAGAVINP-----------------------------------DARIGDNVIINTG 126 (197)
T ss_pred eEECCCeEECCC---CEECCCCEEcCCCEECC-----------------------------------CCEECCCeEECCC
Confidence 445555555333 56677777777777742 3678888888888
Q ss_pred cee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842 177 CSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH 239 (284)
Q Consensus 177 ~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~ 239 (284)
+.| ++++||++|+|+.++.+.++++||++|+|+.++.|.++..|++++++ |..+.+.+.+++
T Consensus 127 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v-~~~~~v~~~~~~ 189 (197)
T cd03360 127 AVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAII-GAGAVVTKDVPD 189 (197)
T ss_pred CEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEE-CCCCEEcCCCCC
Confidence 887 56899999999999999999999999999999999988999998875 677777766554
No 108
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.35 E-value=2.2e-11 Score=103.88 Aligned_cols=43 Identities=21% Similarity=0.463 Sum_probs=30.0
Q ss_pred ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
+++||++|+||.++.|. +++||++|+||++|+|.+. |.+++++
T Consensus 130 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~ 173 (192)
T PRK09677 130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVI 173 (192)
T ss_pred CeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEE
Confidence 47788888888887764 5777777777777777653 4454444
No 109
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.35 E-value=1.3e-11 Score=104.78 Aligned_cols=104 Identities=17% Similarity=0.299 Sum_probs=79.8
Q ss_pred CEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCC
Q 039842 97 ASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAY 176 (284)
Q Consensus 97 ~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~ 176 (284)
+.|.+.+.+..+ +.||++|.|+++++|+. +++||++|.|+.+
T Consensus 88 ~~i~~~a~i~~~---~~ig~~~~i~~~~~i~~-----------------------------------~~~ig~~~~i~~~ 129 (201)
T TIGR03570 88 TLIHPSAIVSPS---ASIGEGTVIMAGAVINP-----------------------------------DVRIGDNVIINTG 129 (201)
T ss_pred EEecCCeEECCC---CEECCCCEECCCCEECC-----------------------------------CCEECCCcEECCC
Confidence 445555555322 66777777777777742 3678888888888
Q ss_pred ceee-ccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCH
Q 039842 177 CSLR-SCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTH 239 (284)
Q Consensus 177 ~~I~-~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~ 239 (284)
+.|. +++||++++|+.++.|.++++||++|+|+++++|.+++.|++++++ |.++.+.+++++
T Consensus 130 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i-~~~~~v~~~~~~ 192 (201)
T TIGR03570 130 AIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIV-GAGAVVTKDIPD 192 (201)
T ss_pred CEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEE-CCCCEECCcCCC
Confidence 8884 6899999999999999999999999999999999988999998885 666766666554
No 110
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1.5e-11 Score=113.66 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=84.2
Q ss_pred cEEcCCcE-EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccc-----cCCC
Q 039842 79 AYVAPNVV-LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQM-----SCPR 152 (284)
Q Consensus 79 ~~I~~~a~-i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~-----~~~~ 152 (284)
+.++|... |.+.++||.++.|.++++|.|. +.||++|.||++|+|.... +|.+..+....+ ....
T Consensus 256 tl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~---t~ig~~v~iGpg~~i~ds~------I~~~a~I~~~S~ie~s~vg~~ 326 (460)
T COG1207 256 TLIDPATTYIRGDVEIGRDVVIEPNVILEGN---TVIGDNVVIGPGSVIKDSV------IGDNAVIKAYSVIEGSTVGEG 326 (460)
T ss_pred EEeCCCeEEEcCcEEECCceEEecCcEEeee---EEECCceEECCCcEEEeeE------EcCCCEEEecceeeccEecCC
Confidence 45566544 6789999999999999999887 8999999999997775432 222222222111 1112
Q ss_pred CCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCe
Q 039842 153 SNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSV 213 (284)
Q Consensus 153 ~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~ 213 (284)
...++++++...+.|++++.||..|-++.++||+++..+.-+.|+ ++.||+++=||+|++
T Consensus 327 ~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlG-DA~iG~~~NiGAGtI 386 (460)
T COG1207 327 ATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLG-DAEIGENVNIGAGTI 386 (460)
T ss_pred cccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeec-cceecCCceeccceE
Confidence 334455555566777777777777777777777777777666663 578888888888754
No 111
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.30 E-value=5.2e-11 Score=96.01 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=63.5
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (284)
.+++++.|.+.+.+..++.||+++.|.- .|.. .++||.+|.|+++|.|......
T Consensus 15 ~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~---~a~Ighd~~IG~~~~I~~~l~G--------------------- 68 (147)
T cd04649 15 YLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISS---GVIVGKGSDVGGGASIMGTLSG--------------------- 68 (147)
T ss_pred EECCCcEECCCCEEccCCEECCCeEECC--cccC---CEEECCCCEECCCCEEEEECCC---------------------
Confidence 3445555555555444555555444431 1112 2667777777777777621110
Q ss_pred CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEEC
Q 039842 154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE 203 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig 203 (284)
....++.||++|+||.+++| ++.||++|.||++++|.+++.|-
T Consensus 69 ------~~~~pV~IG~~~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 69 ------GGNNVISIGKRCLLGANSGI-GISLGDNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred ------CcccCEEECCCCEECCCCEE-eEEECCCCEECCCCEEeCCeEEE
Confidence 02235999999999999999 89999999999999998887664
No 112
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.30 E-value=5.7e-11 Score=90.92 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=59.0
Q ss_pred cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC
Q 039842 89 GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE 168 (284)
Q Consensus 89 ~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig 168 (284)
+.+.|++++.|++++.|.+. +.||++|.|++++.|+. +++||
T Consensus 10 g~v~ig~~~~I~~~~~i~g~---v~IG~~~~Ig~~~~I~~-----------------------------------~v~IG 51 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGP---VYIGPGSRVKMGARIYG-----------------------------------NTTIG 51 (101)
T ss_pred CCEEECCCCEECCCCEEeCC---CEECCCCEECCCCEEeC-----------------------------------cCEEC
Confidence 35677777777777777554 77777777777777752 36777
Q ss_pred CCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842 169 RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP 215 (284)
Q Consensus 169 ~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~ 215 (284)
++|.||. .|..+.|++++.|+.++.|+ +++||+++.|++++...
T Consensus 52 ~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v~ig~~~~~~ 95 (101)
T cd05635 52 PTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWCNLGAGTNNS 95 (101)
T ss_pred CCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCCEECCCceec
Confidence 7777764 45667777777777777664 67777777777766544
No 113
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.29 E-value=1.7e-11 Score=122.99 Aligned_cols=102 Identities=23% Similarity=0.331 Sum_probs=81.5
Q ss_pred EecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceE
Q 039842 87 LAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETS 166 (284)
Q Consensus 87 i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (284)
..-+++||+++.|+....+. ...++||++|.|+++|+|++...
T Consensus 594 r~lGa~IG~~v~i~~~~~~~--~dlv~IGd~~~I~~~~~i~~h~~----------------------------------- 636 (695)
T TIGR02353 594 RLLGVKIGRGVYIDGTDLTE--RDLVTIGDDSTLNEGSVIQTHLF----------------------------------- 636 (695)
T ss_pred HHCCCEECCCeEECCeeccC--CCCeEECCCCEECCCCEEEeccc-----------------------------------
Confidence 34566777777777665553 33489999999999999974211
Q ss_pred ECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCc
Q 039842 167 IERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPA 231 (284)
Q Consensus 167 Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa 231 (284)
.+++. .+.+++||++|+||.+|+|.++++|||+|+|+++++|..+.++|+++++.|+|+
T Consensus 637 -~~~~~-----~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 637 -EDRVM-----KSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred -ccccc-----ccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEEEeccC
Confidence 11111 346789999999999999999999999999999999998889999999999996
No 114
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.27 E-value=7.2e-11 Score=86.47 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=59.6
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
||+++.|++++.|. + ..||++|.|++++.|. +++|++++.
T Consensus 2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~------------------------------------~s~i~~~~~ 41 (81)
T cd04652 2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKIT------------------------------------NCVIMDNVT 41 (81)
T ss_pred ccCCCEECCCCEEe-C---cEECCCCEECCCCEEe------------------------------------CcEEeCCCE
Confidence 56677777777774 4 6678888888888774 367888888
Q ss_pred ECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCC
Q 039842 173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGS 212 (284)
Q Consensus 173 Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s 212 (284)
|++++.+.+++|++++.|+.++.+ .++.|++++.|++++
T Consensus 42 ig~~~~l~~svi~~~~~i~~~~~v-~~~ii~~~~~i~~~~ 80 (81)
T cd04652 42 IEDGCTLENCIIGNGAVIGEKCKL-KDCLVGSGYRVEAGT 80 (81)
T ss_pred ECCCCEEeccEEeCCCEECCCCEE-ccCEECCCcEeCCCC
Confidence 888888888888888888888877 467777777776653
No 115
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.26 E-value=7.4e-11 Score=85.50 Aligned_cols=77 Identities=18% Similarity=0.375 Sum_probs=56.1
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
||+++.|++++.|. + ..||++|.|++++.|. ++.|++++.
T Consensus 2 ig~~~~I~~~~~i~-~---s~ig~~~~ig~~~~i~------------------------------------~s~i~~~~~ 41 (79)
T cd05787 2 IGRGTSIGEGTTIK-N---SVIGRNCKIGKNVVID------------------------------------NSYIWDDVT 41 (79)
T ss_pred ccCCCEECCCCEEe-c---cEECCCCEECCCCEEe------------------------------------CcEEeCCCE
Confidence 56777777777774 3 6678888888888774 267888888
Q ss_pred ECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842 173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE 209 (284)
Q Consensus 173 Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~ 209 (284)
|++++.|..+.|++++.|+.++.|.++++|++++.|+
T Consensus 42 i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 42 IEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred ECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 8888888777777777777777776666666666655
No 116
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2e-11 Score=116.98 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=73.6
Q ss_pred CceeCCCcEEc-CCcEEe-cceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeeccccc
Q 039842 72 VPKVAVDAYVA-PNVVLA-GQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMS 149 (284)
Q Consensus 72 ~~~i~~~~~I~-~~a~i~-~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~ 149 (284)
+|.+.+..+-+ ....+. .++.-++.+.+...+.+... +.||.++.||.++.|.
T Consensus 295 YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~---~~ig~gT~Ig~g~~I~---------------------- 349 (673)
T KOG1461|consen 295 YPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGAN---VVIGAGTKIGSGSKIS---------------------- 349 (673)
T ss_pred ccccccccCCCCceeeecccccccCccceehhhccccce---EEecccccccCCCeee----------------------
Confidence 34444443443 333332 26666777777776766433 7888888888888884
Q ss_pred CCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEE-----cCCCEECCCCEEcCCCeeCCCCeeCCC
Q 039842 150 CPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSIL-----MEGSMVETHAILEAGSVLPPGRRIPTG 223 (284)
Q Consensus 150 ~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I-----~~gv~Ig~~~~I~a~s~V~~~~~I~~~ 223 (284)
|++||.+|.||.||.|.++.|++||+||.||.| +++++|+++|++.+|++++.+..+|++
T Consensus 350 --------------NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~ 414 (673)
T KOG1461|consen 350 --------------NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRN 414 (673)
T ss_pred --------------cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCC
Confidence 589999999999999998888888888888654 445555544444444444433344433
No 117
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=1.8e-10 Score=88.12 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=15.9
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEE
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSIL 196 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I 196 (284)
++|++++.|+++++|..++||+++.||+++.+
T Consensus 63 svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~ 94 (101)
T cd05635 63 SIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNN 94 (101)
T ss_pred cEEcCCCEecCcCEEeeeEECCCCEECCCcee
Confidence 44445555555555555555555555555443
No 118
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.23 E-value=1.4e-10 Score=84.27 Aligned_cols=77 Identities=13% Similarity=0.297 Sum_probs=57.0
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
||+++.|++++.|. + ..||++|.|++++.|. +++|++++.
T Consensus 2 ig~~~~I~~~~~i~-~---s~ig~~~~Ig~~~~i~------------------------------------~svi~~~~~ 41 (79)
T cd03356 2 IGESTVIGENAIIK-N---SVIGDNVRIGDGVTIT------------------------------------NSILMDNVT 41 (79)
T ss_pred ccCCcEECCCCEEe-C---CEECCCCEECCCCEEe------------------------------------CCEEeCCCE
Confidence 56666666666663 3 5677777777777774 267888888
Q ss_pred ECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842 173 IGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE 209 (284)
Q Consensus 173 Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~ 209 (284)
|++++.+.+++|++++.|+.++.+.+++.|++++.|+
T Consensus 42 i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 42 IGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred ECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 8888888888888888888888777667777777665
No 119
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.22 E-value=1.3e-10 Score=90.89 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=35.3
Q ss_pred ECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCE
Q 039842 93 VCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVT 172 (284)
Q Consensus 93 IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~ 172 (284)
||+++.|+++++|.++ ++||++|.|++++.|+. +++||++|.
T Consensus 1 ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~-----------------------------------~~~Ig~~~~ 42 (119)
T cd03358 1 IGDNCIIGTNVFIEND---VKIGDNVKIQSNVSIYE-----------------------------------GVTIEDDVF 42 (119)
T ss_pred CCCCCEECCCcEECCC---cEECCCcEECCCcEEeC-----------------------------------CeEECCCcE
Confidence 3566666666666444 66777777777777742 367777777
Q ss_pred ECCCceeeccEE
Q 039842 173 IGAYCSLRSCTI 184 (284)
Q Consensus 173 Ig~~~~I~~v~I 184 (284)
|++++.+.+..+
T Consensus 43 I~~~~~i~~~~~ 54 (119)
T cd03358 43 IGPNVVFTNDLY 54 (119)
T ss_pred EcCCeEEecCCC
Confidence 777777755443
No 120
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.22 E-value=8.8e-11 Score=110.11 Aligned_cols=95 Identities=21% Similarity=0.337 Sum_probs=55.9
Q ss_pred CCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCC
Q 039842 83 PNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLP 162 (284)
Q Consensus 83 ~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
+++.|++++.| .++.|+++|.|.+.....+||++|.|+++|.|.
T Consensus 281 ~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~----------------------------------- 324 (380)
T PRK05293 281 PPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK----------------------------------- 324 (380)
T ss_pred CCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-----------------------------------
Confidence 33333333333 234445555543222235677777777777663
Q ss_pred cceEECCCCEECCCceeeccEECCCCEECCCcEEcCC----CEECCCCEEcCCCee
Q 039842 163 AETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEG----SMVETHAILEAGSVL 214 (284)
Q Consensus 163 ~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~g----v~Ig~~~~I~a~s~V 214 (284)
+++|+++|.|+++|.|.+++|++++.|+.++.+.++ .+||+++.|.+++++
T Consensus 325 -~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 325 -DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred -CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 366777777777777777777777777777777554 445555555555443
No 121
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.21 E-value=9.2e-11 Score=104.57 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=65.0
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
+..++.|++.+.|+.++.|+.+ .+.+|..+ ++||++|.|..+++|+.......
T Consensus 138 ~~~gidI~~~a~IG~g~~I~h~----~givIG~~---a~IGdnv~I~~~VtiGg~~~~~~-------------------- 190 (273)
T PRK11132 138 VAFQVDIHPAAKIGRGIMLDHA----TGIVIGET---AVIENDVSILQSVTLGGTGKTSG-------------------- 190 (273)
T ss_pred eeeeeEecCcceECCCeEEcCC----CCeEECCC---CEECCCCEEcCCcEEecCcccCC--------------------
Confidence 3445566666665555555543 24455323 78899999999999975432110
Q ss_pred ccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv 200 (284)
....+||++|+||++|.| .+++||++|.||++++|..++
T Consensus 191 -------~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dV 230 (273)
T PRK11132 191 -------DRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPV 230 (273)
T ss_pred -------CcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECccc
Confidence 013689999999999998 679999999999999998763
No 122
>PRK10502 putative acyl transferase; Provisional
Probab=99.20 E-value=2e-10 Score=97.23 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=40.8
Q ss_pred eEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCC
Q 039842 91 VTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERF 170 (284)
Q Consensus 91 v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~ 170 (284)
+.||+++.|++++.|. ....+.||++|.|++++.|.... .++||++
T Consensus 52 a~iG~~~~I~~~a~i~-~~~~~~IG~~~~Ig~~~~I~~~~---------------------------------~v~IG~~ 97 (182)
T PRK10502 52 AKIGKGVVIRPSVRIT-YPWKLTIGDYAWIGDDVWLYNLG---------------------------------EITIGAH 97 (182)
T ss_pred cccCCCcEEcCCEEEe-cCCeEEECCCeEECCCceecccC---------------------------------ceEECCC
Confidence 4567777777777775 23358899999999999886421 3788888
Q ss_pred CEECCCceee
Q 039842 171 VTIGAYCSLR 180 (284)
Q Consensus 171 v~Ig~~~~I~ 180 (284)
|.|+.+|.|.
T Consensus 98 ~~I~~~~~I~ 107 (182)
T PRK10502 98 CVISQKSYLC 107 (182)
T ss_pred cEECCCeEEE
Confidence 8888887763
No 123
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.18 E-value=2e-10 Score=95.33 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=57.5
Q ss_pred CcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccc
Q 039842 78 DAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLY 157 (284)
Q Consensus 78 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 157 (284)
++.|++++.|++++.|+.+ .+++|..+ ++||++|.|+++|.|+......
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~----~g~~Ig~~---~~IG~~~~I~~~v~ig~~~~~~------------------------ 109 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHG----TGVVIGET---AVIGDDVTIYHGVTLGGTGKEK------------------------ 109 (162)
T ss_pred CeEeCCCCEECCCeEECCC----CeEEECCC---CEECCCCEEcCCCEECCCcccc------------------------
Confidence 4455555444444444322 12444222 5677777777777775431100
Q ss_pred cccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842 158 IAWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 158 ~~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv 200 (284)
.....+||++|+||.++.|. +++|||+|+||++++|.+++
T Consensus 110 ---~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dv 150 (162)
T TIGR01172 110 ---GKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDV 150 (162)
T ss_pred ---CCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCC
Confidence 01236899999999999985 59999999999999999875
No 124
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.18 E-value=2.1e-10 Score=102.78 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=67.4
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCC-------------CcEEECCCCEECCCCEEecCCCCCccccccee
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDL-------------NKITVGFCSNVQERCVLHAAWNSPYRFVGFVS 141 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~-------------~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~ 141 (284)
++.++.|++.++|..++.||++++|.++++|.-+. ..++||++|.||.+|.|+..
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~t------------ 242 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGT------------ 242 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEE------------
Confidence 45666666666666666666666666666653221 12345666666666665321
Q ss_pred eeecccccCCCCCccccccCCcc----eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEEC
Q 039842 142 LLIDLQMSCPRSNSLYIAWLPAE----TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE 203 (284)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~----v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig 203 (284)
+.++ +.||++|+||.++.| ++.||++|+||++++|..+++|-
T Consensus 243 -------------------LsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 243 -------------------LSGGGNIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred -------------------EeCCCceeEEECCCcEECCCCEE-eeEECCCCEECCCCEEeCCcEEE
Confidence 1123 899999999999999 99999999999999998888774
No 125
>PRK10191 putative acyl transferase; Provisional
Probab=99.18 E-value=2.3e-10 Score=93.19 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=57.5
Q ss_pred cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842 79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI 158 (284)
Q Consensus 79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 158 (284)
..|++.+.+++++.|+++ .+++|.++ +.||++|.|+++|+|+.....
T Consensus 42 ~~I~~~a~Ig~~~~I~~g----~~i~I~~~---~~IGd~~~I~h~v~IG~~~~~-------------------------- 88 (146)
T PRK10191 42 YEIQAAATIGRRFTIHHG----YAVVINKN---VVAGDDFTIRHGVTIGNRGAD-------------------------- 88 (146)
T ss_pred cccCCCCEECCCeEECCC----CeEEECCC---cEECCCCEECCCCEECCCCcC--------------------------
Confidence 344554554444445442 13444333 666777777777777532210
Q ss_pred ccCCcceEECCCCEECCCceee-ccEECCCCEECCCcEEcCCC
Q 039842 159 AWLPAETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 159 ~~~~~~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~gv 200 (284)
....++||++|+||.++.+. +++||++++||++++|.+++
T Consensus 89 --~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv 129 (146)
T PRK10191 89 --NMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDSV 129 (146)
T ss_pred --CCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCcc
Confidence 11247899999999999995 69999999999999998764
No 126
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.18 E-value=3e-10 Score=82.97 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=34.1
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILE 209 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~ 209 (284)
++|++++.|++++.+.++++++++.|+.++.+..+..||+++.|+
T Consensus 35 sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 35 CVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred eEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 567777777777778778888888888877776667777776665
No 127
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.16 E-value=2.7e-10 Score=81.84 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=54.7
Q ss_pred EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842 92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV 171 (284)
Q Consensus 92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v 171 (284)
.||+++.|++++.|.+. ++||++|.|++++.|...... .
T Consensus 2 ~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~------------------------------------~-- 40 (78)
T cd00208 2 FIGEGVKIHPKAVIRGP---VVIGDNVNIGPGAVIGAATGP------------------------------------N-- 40 (78)
T ss_pred EECCCeEECCCCEEeCc---EEECCCCEECCCCEEEeccCC------------------------------------C--
Confidence 57788888888888644 999999999999888653210 0
Q ss_pred EECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842 172 TIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL 214 (284)
Q Consensus 172 ~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V 214 (284)
...+++||++|+|+.+++|.++++||++++|++++.|
T Consensus 41 ------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 41 ------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred ------ccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 2344677777777777777777777777777777765
No 128
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.16 E-value=2e-10 Score=96.13 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=69.8
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
+--++.|+|.++|+.++.|.-+ -+.+| |+. .+||++|.|..+++|+....... +|
T Consensus 64 ~~~gieIhp~A~IG~g~fIdHg----~GvVI-get--a~IGddv~I~~gVTLGgtg~~~g----------------~R-- 118 (194)
T COG1045 64 FLFGIEIHPGAKIGRGLFIDHG----TGVVI-GET--AVIGDDVTIYHGVTLGGTGKESG----------------KR-- 118 (194)
T ss_pred hhcceeeCCCCeECCceEEcCC----ceEEE-cce--eEECCCeEEEcceEecCCCCcCC----------------CC--
Confidence 3445566666665555555432 12333 222 55666666667777765443211 11
Q ss_pred ccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL 225 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v 225 (284)
+ -+||++|.||+++.| .+.+||||+.||+||+|..++ .++++|. .||+..+
T Consensus 119 ------h---PtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdV--------P~~~tvv---GvPArii 170 (194)
T COG1045 119 ------H---PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDV--------PPNATVV---GVPARVI 170 (194)
T ss_pred ------C---CccCCCeEECCCCEEEcceEECCCCEECCCceEccCC--------CCCceEe---cCcceEe
Confidence 3 379999999999987 789999999999999999988 6777665 5777655
No 129
>PLN02739 serine acetyltransferase
Probab=99.15 E-value=3e-10 Score=103.56 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=33.5
Q ss_pred ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842 164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv 200 (284)
..+||++|+||++++| .+++||+++.||+|++|..++
T Consensus 257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDV 294 (355)
T PLN02739 257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDV 294 (355)
T ss_pred CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCC
Confidence 3789999999999998 679999999999999998764
No 130
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.15 E-value=5.5e-10 Score=81.73 Aligned_cols=79 Identities=13% Similarity=0.257 Sum_probs=68.3
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
+++++.|++++.|. ++.||+++.|++++.|. + ..|+++|.|++++.|.
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~---s~i~~~~~ig~~~~l~--------------------------- 49 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT-N---CVIMDNVTIEDGCTLE--------------------------- 49 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEe-C---cEEeCCCEECCCCEEe---------------------------
Confidence 57888999999886 68899999999999995 5 7799999999999984
Q ss_pred ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCc
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHS 194 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s 194 (284)
+++|++++.|++++.+.+++||+++.|++++
T Consensus 50 ---------~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 50 ---------NCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ---------ccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 3789999999999999888888888887764
No 131
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.14 E-value=4.4e-10 Score=81.36 Aligned_cols=75 Identities=23% Similarity=0.379 Sum_probs=61.5
Q ss_pred ECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCC
Q 039842 114 VGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQH 193 (284)
Q Consensus 114 IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~ 193 (284)
||++|.|++++.|. ++.|++++.|++++.|.++.|++++.|+.+
T Consensus 2 ig~~~~I~~~~~i~------------------------------------~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~ 45 (79)
T cd05787 2 IGRGTSIGEGTTIK------------------------------------NSVIGRNCKIGKNVVIDNSYIWDDVTIEDG 45 (79)
T ss_pred ccCCCEECCCCEEe------------------------------------ccEECCCCEECCCCEEeCcEEeCCCEECCC
Confidence 68888899988884 268999999999999999999999999999
Q ss_pred cEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842 194 SILMEGSMVETHAILEAGSVLPPGRRIPTGEL 225 (284)
Q Consensus 194 s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v 225 (284)
+.|. +++|++++.|+.++.+.+++.+.+++.
T Consensus 46 ~~i~-~~~i~~~~~i~~~~~i~~~~~v~~~~~ 76 (79)
T cd05787 46 CTIH-HSIVADGAVIGKGCTIPPGSLISFGVV 76 (79)
T ss_pred CEEe-CcEEcCCCEECCCCEECCCCEEeCCcE
Confidence 8885 677888888887777776666666654
No 132
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5e-10 Score=104.41 Aligned_cols=96 Identities=20% Similarity=0.342 Sum_probs=76.8
Q ss_pred cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842 85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE 164 (284)
Q Consensus 85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+.+.+++.||++|.|++++.|.++ ++||++|.|++++.|. +
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~i~------------------------------------~ 296 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPY---TVIGEGVTIGNGVEIK------------------------------------N 296 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCC---cEECCCCEECCCcEEE------------------------------------e
Confidence 778888889999999999888655 8889999999998884 4
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv 226 (284)
++|+++|.|++++.+.+++||++|.||++. . ||+ +.++.++.+.+++.+++++++
T Consensus 297 Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~~~~i~~g~~~~~~~~~ 351 (358)
T COG1208 297 SIIMDNVVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGINSEILPGVVVGPGSVV 351 (358)
T ss_pred eEEEcCCEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecCceEEcCceEeCCCccc
Confidence 899999999999999999999999999933 2 666 666666666655555555443
No 133
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.13 E-value=4.2e-10 Score=100.39 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=36.0
Q ss_pred ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEEC
Q 039842 164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVE 203 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig 203 (284)
+++||++|+||.+|.| ++.||++|+||++++|..++.|-
T Consensus 225 pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 225 VISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred cEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCeEEE
Confidence 4999999999999999 99999999999999999888764
No 134
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.10 E-value=1.1e-09 Score=93.98 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=63.0
Q ss_pred EECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCC
Q 039842 92 TVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFV 171 (284)
Q Consensus 92 ~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v 171 (284)
.+|++++|.+.+.+. .+..+.||+++.|+.+|+|... .+++||++|
T Consensus 57 ~ig~~~~I~~~~~~~-~g~ni~IG~~v~In~~~~I~d~---------------------------------~~I~IGd~v 102 (203)
T PRK09527 57 TVGENAWVEPPVYFS-YGSNIHIGRNFYANFNLTIVDD---------------------------------YTVTIGDNV 102 (203)
T ss_pred hcCCCcEEcCCEEEe-eCCCcEEcCCcEECCCcEEecC---------------------------------CCEEECCCC
Confidence 478888888888873 2334899999999999988643 248999999
Q ss_pred EECCCceeecc----E---ECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEe
Q 039842 172 TIGAYCSLRSC----T---IEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWA 227 (284)
Q Consensus 172 ~Ig~~~~I~~v----~---Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~ 227 (284)
.|+++|.|... . -.++...+..++|+++|.||.+++|.++++|++++.|++++++.
T Consensus 103 ~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 103 LIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred EECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 99999988531 0 01122233334444444444444444444444444555555544
No 135
>PLN02694 serine O-acetyltransferase
Probab=99.09 E-value=5.2e-10 Score=100.02 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=58.6
Q ss_pred cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842 79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI 158 (284)
Q Consensus 79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 158 (284)
+.|+++++|+.++.|... .+++|. +. +.||++|.|..+++++......
T Consensus 161 vdI~p~A~IG~gv~Idh~----tGVVIG-e~--a~IGdnv~I~~~VtLGg~g~~~------------------------- 208 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHA----TGVVIG-ET--AVIGNNVSILHHVTLGGTGKAC------------------------- 208 (294)
T ss_pred EEeCCcceecCCEEEeCC----CCeEEC-CC--cEECCCCEEeecceeCCccccc-------------------------
Confidence 445555555555544431 134442 22 5666777777777775432100
Q ss_pred ccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842 159 AWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 159 ~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv 200 (284)
...+++||++|+||.++.| .+++||++|.||++++|..++
T Consensus 209 --~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kdV 249 (294)
T PLN02694 209 --GDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDV 249 (294)
T ss_pred --CCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCcC
Confidence 1124799999999999999 789999999999999998764
No 136
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.07 E-value=1.5e-09 Score=78.85 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=49.9
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL 225 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v 225 (284)
+.||++|+|++++.++.+.|++++.|+.++.|. ++.|++++.|++++.+..+..+++++.
T Consensus 17 s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~-~svv~~~~~i~~~~~i~~~~~ig~~~~ 76 (79)
T cd03356 17 SVIGDNVRIGDGVTITNSILMDNVTIGANSVIV-DSIIGDNAVIGENVRVVNLCIIGDDVV 76 (79)
T ss_pred CEECCCCEECCCCEEeCCEEeCCCEECCCCEEE-CCEECCCCEECCCCEEcCCeEECCCeE
Confidence 789999999999999999999999999999884 677888888888877776566666554
No 137
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=2.2e-09 Score=78.36 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=63.2
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
++++++|++++.|++++.|+++|.|++++.|. + ..|++++.|++++.|.
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~---sii~~~~~i~~~~~i~--------------------------- 50 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-R---CVILSNSTVRDHSWVK--------------------------- 50 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEe-e---eEEcCCCEECCCCEEe---------------------------
Confidence 46778888888888888899999999999885 4 7788999999998884
Q ss_pred ccccccCCcceEECCCCEECCCceeec-cEECCCCEEC
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRS-CTIEPECIIG 191 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG 191 (284)
++++++++.|++++.+.. ..|||++.|+
T Consensus 51 ---------~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 51 ---------SSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred ---------CCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 378899999998888866 6777777665
No 138
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.06 E-value=2.4e-09 Score=76.86 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=28.3
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEec
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRG 107 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g 107 (284)
.+++++.|++++.|.+++.||+++.|++++.|.+
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~ 35 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGA 35 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEe
Confidence 4678888888888888888888888888888863
No 139
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.05 E-value=2.8e-09 Score=81.95 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=28.6
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP 215 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~ 215 (284)
++|++++.|++++.|..+.|++++.||.++.+ .++.||+++.|++++.+.
T Consensus 29 svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~siig~~~~Ig~~~~v~ 78 (104)
T cd04651 29 SVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAIIDKNVVIPDGVVIG 78 (104)
T ss_pred CEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEEECCCCEECCCCEEC
Confidence 45555555555555555556666666655555 345555555555555554
No 140
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.05 E-value=2.4e-09 Score=89.47 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=21.9
Q ss_pred ceEECCCCEECCCcee-eccEECCCCEECCCcEEcCC
Q 039842 164 ETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEG 199 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~g 199 (284)
+++||++|+||.+++| .+++||++|+||++|+|.++
T Consensus 118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~ 154 (169)
T cd03357 118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD 154 (169)
T ss_pred CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 3666666666666665 35666666666666666553
No 141
>PLN02357 serine acetyltransferase
Probab=99.04 E-value=1.8e-09 Score=99.21 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=59.1
Q ss_pred cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842 79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI 158 (284)
Q Consensus 79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 158 (284)
+.|+++++|+.++.|... .+++|..+ ++||++|.|..+|+|+.......
T Consensus 227 vdI~p~a~IG~Gv~Idh~----~giVIGe~---avIGdnV~I~~gVtIGg~g~~~g------------------------ 275 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHA----TGVVIGET---AVVGNNVSILHNVTLGGTGKQSG------------------------ 275 (360)
T ss_pred eeeCCCCEECCCeEECCC----CceEECCC---CEECCCCEEeCCceecCccccCC------------------------
Confidence 455555554444444431 13444222 66778888888888865322100
Q ss_pred ccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842 159 AWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 159 ~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv 200 (284)
...++||++|+||+++.| .+++||+++.||++++|.+++
T Consensus 276 ---~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dV 315 (360)
T PLN02357 276 ---DRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDV 315 (360)
T ss_pred ---ccCceeCCCeEECCceEEECCeEECCCCEECCCCEECccc
Confidence 124799999999999888 689999999999999998764
No 142
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.03 E-value=3.1e-09 Score=98.77 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=73.1
Q ss_pred EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842 81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW 160 (284)
Q Consensus 81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
+.+.+.+.+.+.||++|.| +++.|.+. +.||++|.|+ +++|.
T Consensus 245 i~~~~~i~~~~~i~~~~~i-~~~~i~~~---~~Ig~~~~I~-~~~i~--------------------------------- 286 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKI-VNSVIRGP---AVIGEDCIIE-NSYIG--------------------------------- 286 (353)
T ss_pred cCCCCEEcCCEEECCCCEE-eCCEEECC---cEECCCCEEc-CcEEC---------------------------------
Confidence 5666777778888888888 67777654 7788888876 44443
Q ss_pred CCcceEECCCCEECCCceeeccEECCCCEECCCc-EEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCcee
Q 039842 161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHS-ILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARF 233 (284)
Q Consensus 161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s-~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~ 233 (284)
.+++||++|.|+ +|.|.+++|++++.|+.++ .+ .+++|++++.|+.++.+.. ....+.|.++.+
T Consensus 287 --~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~-----~~~~~~g~~~~~ 351 (353)
T TIGR01208 287 --PYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARI-VDSVIGKKVRIKGNRRRPG-----DLRLTIGDYSQV 351 (353)
T ss_pred --CCCEECCCCEEe-eeEEEeeEEcCCCEEcCCccee-ecCEEcCCCEECCCccccc-----ccceEEcCCcee
Confidence 147788888887 6777788888888887774 44 5677777777776655551 123556776654
No 143
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.03 E-value=2.6e-09 Score=102.16 Aligned_cols=114 Identities=16% Similarity=0.264 Sum_probs=69.1
Q ss_pred CcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecc-cccCCCCCccccccCC
Q 039842 84 NVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDL-QMSCPRSNSLYIAWLP 162 (284)
Q Consensus 84 ~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 162 (284)
++.+.+ +.|+++|.|+ ++.|. + .+||++|.|+++|+|....- +.. .+-.. ..
T Consensus 310 ~~~i~~-s~I~~~~~I~-~~~I~-~---svI~~~~~Ig~~~~I~~sii------------~g~~~~~~~---------~~ 362 (436)
T PLN02241 310 DCRITD-SIISHGCFLR-ECKIE-H---SVVGLRSRIGEGVEIEDTVM------------MGADYYETE---------EE 362 (436)
T ss_pred CCeEEE-eEEcCCcEEc-CeEEE-e---eEEcCCCEECCCCEEEEeEE------------ECCCccccc---------cc
Confidence 444444 7788888888 88884 4 68899999999888864211 000 00000 00
Q ss_pred cceEECCC---CEECCCceeeccEECCCCEECCCcEEc------CCCEECCCCEEcCC-CeeCCCCeeCCCC
Q 039842 163 AETSIERF---VTIGAYCSLRSCTIEPECIIGQHSILM------EGSMVETHAILEAG-SVLPPGRRIPTGE 224 (284)
Q Consensus 163 ~~v~Ig~~---v~Ig~~~~I~~v~Igd~v~IG~~s~I~------~gv~Ig~~~~I~a~-s~V~~~~~I~~~~ 224 (284)
...+...+ +.||++|.+.+++|+++|+||.++.|. +..++|++|+|+.+ ++|+++..+++++
T Consensus 363 ~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 434 (436)
T PLN02241 363 IASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGT 434 (436)
T ss_pred cccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence 00111123 268888888888888888888888876 34555666666666 3555555555544
No 144
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.01 E-value=2e-09 Score=94.20 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=71.0
Q ss_pred ceeCCCcEEcCCcEEecceEECC------CCEECCCCEEecC---CCcEEECCCCEECCCCEEecCCCCCcccccceeee
Q 039842 73 PKVAVDAYVAPNVVLAGQVTVCD------GASVWPGSVLRGD---LNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLL 143 (284)
Q Consensus 73 ~~i~~~~~I~~~a~i~~~v~IG~------~~~I~~~~~I~g~---~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~ 143 (284)
.+|.|++.|-.++.|+.++++-. ++.++.++.|.+. ++.++||+||.|+-++.|..--- +.
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLe-p~--------- 178 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLE-PL--------- 178 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEec-CC---------
Confidence 35555555555555555554444 4555555555443 11266777777777777753211 11
Q ss_pred ecccccCCCCCccccccCCcceEECCCCEECCCc-eeeccEECCCCEECCCcEEcCCCEECC
Q 039842 144 IDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYC-SLRSCTIEPECIIGQHSILMEGSMVET 204 (284)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~-~I~~v~Igd~v~IG~~s~I~~gv~Ig~ 204 (284)
...+++||++|.||+|+ .+.++.+||+|+|++|++|..++.|.+
T Consensus 179 -----------------~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 179 -----------------QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred -----------------CCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceEE
Confidence 22469999999999998 669999999999999999999998875
No 145
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.00 E-value=5.9e-09 Score=79.48 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=35.1
Q ss_pred ceEECCCCEECCCceeec-cEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 164 ETSIERFVTIGAYCSLRS-CTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~-v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
+++||++++|+.++.+.. ++||++|+|++++.|.++ +.+++++
T Consensus 54 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~--~~~~~~~ 97 (101)
T cd03354 54 HPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD--VPANSTV 97 (101)
T ss_pred CCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc--cCCCCEE
Confidence 489999999999999865 899999999999999864 4444443
No 146
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.99 E-value=6.5e-09 Score=79.78 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred eeCCCcEEcCCcEEec--ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCC
Q 039842 74 KVAVDAYVAPNVVLAG--QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCP 151 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~ 151 (284)
.++++++|+++++|.+ ++.||++|.|++++.|... .+..+..++.+....
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~~--------------------- 54 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH-------NHDIDDPERPIEQGV--------------------- 54 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC-------CCCCCcccccccccc---------------------
Confidence 5788999999999988 8999999999999999633 223333332221110
Q ss_pred CCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842 152 RSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILE 209 (284)
Q Consensus 152 ~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~ 209 (284)
...+++||++++|+.++.+ .++.||++|+|+.++.|.. .+.++.+++
T Consensus 55 ---------~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~ 102 (109)
T cd04647 55 ---------TSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA 102 (109)
T ss_pred ---------ccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence 1124889999999999988 6788888888888888863 455555543
No 147
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.97 E-value=7.7e-09 Score=79.46 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=66.5
Q ss_pred cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccc
Q 039842 79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYI 158 (284)
Q Consensus 79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 158 (284)
++|+++++| .++.||++|.|+ ++.|. + ..|+++|.|++++.|.
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~-~---svi~~~~~Ig~~~~I~------------------------------- 44 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVE-N---SVLFRGVRVGSGSVVE------------------------------- 44 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEE-e---CEEeCCCEECCCCEEE-------------------------------
Confidence 577788888 467899999998 88885 4 7799999999999984
Q ss_pred ccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCC
Q 039842 159 AWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 159 ~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv 200 (284)
++.|++++.||.++.+.++.||+++.|+.++.+.+..
T Consensus 45 -----~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~~ 81 (104)
T cd04651 45 -----DSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDP 81 (104)
T ss_pred -----EeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCCc
Confidence 4789999999999999888888888888888776653
No 148
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.96 E-value=9.1e-09 Score=79.40 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=48.0
Q ss_pred cEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECCCCEECCCceeec----cEECC
Q 039842 111 KITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRS----CTIEP 186 (284)
Q Consensus 111 ~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~----v~Igd 186 (284)
.+.||++|.|+++++|... ..++||++|.|++++.|.. ....+
T Consensus 3 ~i~iG~~~~I~~~~~i~~~---------------------------------~~i~IG~~~~I~~~~~I~~~~h~~~~~~ 49 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNL---------------------------------APVTIGSDACISQGAYLCTGSHDYRSPA 49 (107)
T ss_pred eEEECCCCEECCCCEEeeC---------------------------------CceEECCCCEECCCeEeecCCCCCCcCc
Confidence 3889999999999999642 1389999999999998842 22222
Q ss_pred CCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCE
Q 039842 187 ECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGEL 225 (284)
Q Consensus 187 ~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~v 225 (284)
...+ ...+.||++|+|++++.|.+++.|+++++
T Consensus 50 ~~~~------~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~ 82 (107)
T cd05825 50 FPLI------TAPIVIGDGAWVAAEAFVGPGVTIGEGAV 82 (107)
T ss_pred ccee------cCCEEECCCCEECCCCEECCCCEECCCCE
Confidence 3333 34445555555555555555555555544
No 149
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.94 E-value=1.2e-08 Score=86.34 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=19.8
Q ss_pred ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCC
Q 039842 164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEG 199 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~g 199 (284)
+++||++|+||.+|+|. +++||++|+||++++|..+
T Consensus 129 ~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d 165 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD 165 (183)
T ss_pred CeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc
Confidence 35555555555555552 4555555555555555443
No 150
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.91 E-value=9.5e-09 Score=98.11 Aligned_cols=95 Identities=18% Similarity=0.360 Sum_probs=69.7
Q ss_pred ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEEC-
Q 039842 90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIE- 168 (284)
Q Consensus 90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig- 168 (284)
++.||++|.| +++.|. + .+||++|.|+++|+|.. ++|+
T Consensus 308 ~~~ig~~~~i-~~~~i~-~---svi~~~~~Ig~~~~i~~------------------------------------svi~~ 346 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH-H---SVLGIRSRIESGCTIED------------------------------------TLVMG 346 (429)
T ss_pred eCEECCCCEE-CCcEEE-E---EEEeCCcEECCCCEEEe------------------------------------eEEec
Confidence 4678888888 778774 4 78999999999998853 3333
Q ss_pred ------------------CCCEECCCceeeccEECCCCEECCCcEEcCCCEECC------CCEEcCC-CeeCCCCeeCCC
Q 039842 169 ------------------RFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVET------HAILEAG-SVLPPGRRIPTG 223 (284)
Q Consensus 169 ------------------~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~------~~~I~a~-s~V~~~~~I~~~ 223 (284)
.++.||++|.|..++|+++|.||.++.|.++..+.. +++|+.| ++|+.++.++++
T Consensus 347 ~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (429)
T PRK02862 347 ADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDG 426 (429)
T ss_pred CcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCC
Confidence 368899999999999999999999999865554333 5666665 556666666655
Q ss_pred CE
Q 039842 224 EL 225 (284)
Q Consensus 224 ~v 225 (284)
++
T Consensus 427 ~~ 428 (429)
T PRK02862 427 TV 428 (429)
T ss_pred CC
Confidence 43
No 151
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=7.7e-09 Score=94.47 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=66.5
Q ss_pred cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842 85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE 164 (284)
Q Consensus 85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+.++....++++|.|++++.|. . .+||.+|.||+.++|- +
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik-~---SviG~nC~Ig~~~~v~------------------------------------n 368 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIK-R---SVIGSNCDIGERVKVA------------------------------------N 368 (433)
T ss_pred eccchhhccCCCceecccceee-e---eeecCCccccCCcEEE------------------------------------e
Confidence 3445567777777777777774 3 7789999999988883 4
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCC
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGS 212 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s 212 (284)
+.|.++|.||++|.|.+|+||+++.||++|.+ .+|.||.+=+|.|..
T Consensus 369 Silm~nV~vg~G~~IensIIg~gA~Ig~gs~L-~nC~Ig~~yvVeak~ 415 (433)
T KOG1462|consen 369 SILMDNVVVGDGVNIENSIIGMGAQIGSGSKL-KNCIIGPGYVVEAKG 415 (433)
T ss_pred eEeecCcEecCCcceecceecccceecCCCee-eeeEecCCcEEcccc
Confidence 78889999999999999999999999999888 346666665555443
No 152
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.86 E-value=2e-08 Score=94.16 Aligned_cols=53 Identities=19% Similarity=0.421 Sum_probs=45.1
Q ss_pred ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCC
Q 039842 164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPG 217 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~ 217 (284)
+++||++|.||++|.|.+++|+++|.||.+|.| .+++|++++.|++++.+.++
T Consensus 308 ~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i-~~~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 308 HSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI-ERAIIGENAVIGDGVIIGGG 360 (380)
T ss_pred ceEEcCCCEECCCCEEECCEEeCCCEECCCeEE-eEEEECCCCEECCCCEEcCC
Confidence 489999999999999999999999999999987 44777777777777777644
No 153
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.5e-08 Score=93.03 Aligned_cols=94 Identities=17% Similarity=0.303 Sum_probs=61.8
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
+++++.|++++.|++++.||++|.|+.++.|. + ..|.++|.|++++.|.
T Consensus 264 ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~---Sii~~~~~i~~~~~i~--------------------------- 312 (358)
T COG1208 264 IGPGAKIGPGALIGPYTVIGEGVTIGNGVEIK-N---SIIMDNVVIGHGSYIG--------------------------- 312 (358)
T ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEE-e---eEEEcCCEECCCCEEe---------------------------
Confidence 44455555555555555555555555555553 3 6677777777777774
Q ss_pred ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL 214 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V 214 (284)
+++||++|.||+ +. . ||| +.+|.++.+.++++++.++++..+..+
T Consensus 313 ---------~sIi~~~~~ig~-~~-~---i~d-~~~g~~~~i~~g~~~~~~~~~~~~~~~ 357 (358)
T COG1208 313 ---------DSIIGENCKIGA-SL-I---IGD-VVIGINSEILPGVVVGPGSVVESGEIE 357 (358)
T ss_pred ---------eeEEcCCcEECC-ce-e---ecc-eEecCceEEcCceEeCCCccccCcccc
Confidence 478888888888 22 2 888 888888888888888777777766543
No 154
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.84 E-value=4.1e-08 Score=79.99 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=66.6
Q ss_pred eeCCCcEEcC-CcEEec-ceEECCCCEECCCCEEecC-CCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccC
Q 039842 74 KVAVDAYVAP-NVVLAG-QVTVCDGASVWPGSVLRGD-LNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSC 150 (284)
Q Consensus 74 ~i~~~~~I~~-~a~i~~-~v~IG~~~~I~~~~~I~g~-~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~ 150 (284)
.+++.++|++ .+.+.. .++||++|.|++++.|... .++. .+....+ ....... . .
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~---~~~~~~p--~~~~~~~-~---------~------- 60 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPT---DWVSTYP--FYIFGGE-W---------E------- 60 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCC---CCccccc--eEeeccc-c---------c-------
Confidence 4778889988 556654 8999999999999998632 1111 0000000 0000000 0 0
Q ss_pred CCCCccccccCCcceEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEE
Q 039842 151 PRSNSLYIAWLPAETSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAIL 208 (284)
Q Consensus 151 ~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I 208 (284)
+...........+++||++|+||.+|.| .+++||++|+||++|+|.++ +.+++++
T Consensus 61 -~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~ 116 (145)
T cd03349 61 -DDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIV 116 (145)
T ss_pred -cccccccccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEE
Confidence 0000000012246999999999999999 67999999999999999875 3444444
No 155
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.84 E-value=2.9e-08 Score=92.25 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=73.3
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (284)
.+.+.++|++++.| .++.|++.+.|+++|.|. + .+|+++|.|+++|+|+. +.
T Consensus 250 ~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~---~~i~~~~~Ig~~~~i~~-~~---------------------- 301 (353)
T TIGR01208 250 KIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-N---SYIGPYTSIGEGVVIRD-AE---------------------- 301 (353)
T ss_pred EEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-C---cEECCCCEECCCCEEee-eE----------------------
Confidence 45556777777777 566676777888888884 4 57888888888888852 11
Q ss_pred CccccccCCcceEECCCCEECCC-ceeeccEECCCCEECCCcEEcC--CCEECCCCEEc
Q 039842 154 NSLYIAWLPAETSIERFVTIGAY-CSLRSCTIEPECIIGQHSILME--GSMVETHAILE 209 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~-~~I~~v~Igd~v~IG~~s~I~~--gv~Ig~~~~I~ 209 (284)
. .+++|++++.|+.+ +.+.+++||+++.|+.++.+.. +..+|+.++|+
T Consensus 302 -------i-~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 302 -------V-EHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred -------E-EeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 1 25889999999888 4888899999999999888863 45677776654
No 156
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.83 E-value=2.5e-08 Score=95.36 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=35.8
Q ss_pred ceEECCCCEECCCceee-ccEECCCCEECCCcEEcCC-CEECCCCEEcCCCee
Q 039842 164 ETSIERFVTIGAYCSLR-SCTIEPECIIGQHSILMEG-SMVETHAILEAGSVL 214 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~-~v~Igd~v~IG~~s~I~~g-v~Ig~~~~I~a~s~V 214 (284)
+++|+++|+||++|.+. ..-+.+...+|.++.|+.| |+||++++|+++++|
T Consensus 384 ~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 384 NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 47889999999998884 3345555555556666666 688888888877764
No 157
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.82 E-value=7.6e-09 Score=82.08 Aligned_cols=109 Identities=21% Similarity=0.383 Sum_probs=79.8
Q ss_pred eeCCCcEEcCCcEEec---ceEECCCCEECCCCEEecC---------CCcEEECCCCEECCCCEEecCCCCCccccccee
Q 039842 74 KVAVDAYVAPNVVLAG---QVTVCDGASVWPGSVLRGD---------LNKITVGFCSNVQERCVLHAAWNSPYRFVGFVS 141 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~---~v~IG~~~~I~~~~~I~g~---------~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~ 141 (284)
.+...+.|..++.|.+ ++++|.+|++..+++|+.. -.++.||++++|+++|++.+
T Consensus 35 ~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnA------------- 101 (184)
T KOG3121|consen 35 LLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNA------------- 101 (184)
T ss_pred EEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeeh-------------
Confidence 3556678888999865 8999999999999999732 11588999999999999964
Q ss_pred eeecccccCCCCCccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842 142 LLIDLQMSCPRSNSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
..||..|.+| .|++||.+|++.+.|+|-|++++.+.+++++.+.+.
T Consensus 102 -----------------------AqIgsyVh~G-----------knaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~ 147 (184)
T KOG3121|consen 102 -----------------------AQIGSYVHLG-----------KNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIG 147 (184)
T ss_pred -----------------------hhheeeeEec-----------cceeEcCceEhhhheeccCCcccCcccccCCceEEc
Confidence 4567776554 445556666666667777777777777777777765
Q ss_pred CC-CEEecc
Q 039842 222 TG-ELWAGN 229 (284)
Q Consensus 222 ~~-~vv~G~ 229 (284)
.+ +.+.|.
T Consensus 148 g~p~~~~G~ 156 (184)
T KOG3121|consen 148 GNPAQVVGT 156 (184)
T ss_pred CCCceeecc
Confidence 43 555664
No 158
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.73 E-value=9e-08 Score=89.11 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=34.1
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP 215 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~ 215 (284)
++||++|.|+.+|.|.+++|++++.||.++.| .+++||+++.|++++.|+
T Consensus 311 s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 311 SVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred cEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCEeC
Confidence 56667777777777777777777777777766 466666666666666554
No 159
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.9e-08 Score=85.69 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=16.3
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCc
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHS 194 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s 194 (284)
++|-+++.|.+|+++-.++||-.+.||.-+
T Consensus 324 sIIl~d~ei~enavVl~sIigw~s~iGrWa 353 (407)
T KOG1460|consen 324 SIILDDAEIEENAVVLHSIIGWKSSIGRWA 353 (407)
T ss_pred eeeccCcEeeccceEEeeeeccccccccee
Confidence 455555555555555555555555555433
No 160
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.63 E-value=1.9e-07 Score=87.02 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=63.3
Q ss_pred eeCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCC
Q 039842 74 KVAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRS 153 (284)
Q Consensus 74 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (284)
.+.+.++|++.+.+ +++.||++|.|+++ .|. + ..||++|.|+++|+|.
T Consensus 279 ~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~-~---s~i~~~~~I~~~~~i~-------------------------- 326 (361)
T TIGR02091 279 FLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS-H---SVLGIRVRIGSGSTVE-------------------------- 326 (361)
T ss_pred CCCCceEecCCCEE-ECCEECCCCEECCC-EEE-c---cEECCCCEECCCCEEe--------------------------
Confidence 34567777777744 56677888888765 553 4 7788999999998884
Q ss_pred CccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842 154 NSLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM 197 (284)
Q Consensus 154 ~~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~ 197 (284)
+++|++++.||.+|.+++++||+++.|+.++.|+
T Consensus 327 ----------~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 327 ----------DSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred ----------eeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 3789999999999998888888888888877764
No 161
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=7.6e-08 Score=88.07 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=52.6
Q ss_pred ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEE
Q 039842 164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELW 226 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv 226 (284)
.++||++|.||+.|.|.++.|-+++.||.|+.| ++|+||.++.|+.++.+. |+.|+++-++
T Consensus 351 ~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~-nC~Ig~~yvV 411 (433)
T KOG1462|consen 351 RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLK-NCIIGPGYVV 411 (433)
T ss_pred eeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeee-eeEecCCcEE
Confidence 379999999999999999999999999999988 789999999999988876 4566655554
No 162
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.62 E-value=2.8e-07 Score=87.48 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=17.4
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILM 197 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~ 197 (284)
++|+++|.|+++|.|..++|+++|.|++++.|.
T Consensus 349 sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~ 381 (407)
T PRK00844 349 SVLMDGVRIGRGAVVRRAILDKNVVVPPGATIG 381 (407)
T ss_pred eEECCCCEECCCCEEEeeEECCCCEECCCCEEC
Confidence 445555555555555555555555555554443
No 163
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.57 E-value=6.7e-07 Score=75.60 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=37.6
Q ss_pred ceEECCCCEECCCceeecc-EECCCCEECCC-cEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeeccCCHH
Q 039842 164 ETSIERFVTIGAYCSLRSC-TIEPECIIGQH-SILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVRTLTHE 240 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v-~Igd~v~IG~~-s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~~~~~~ 240 (284)
+++||+++.++.+|.|... ..++...--.. ......++||++|+||++++|.+|..|+++++ .|..+.+.+++++.
T Consensus 87 ~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gav-igagsVVtkdvp~~ 164 (190)
T COG0110 87 GITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAV-IGAGSVVTKDVPPY 164 (190)
T ss_pred CeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcE-EeeCCEEeCccCCC
Confidence 3667777777777766321 22211111111 22233455555555555555555555555555 34455555555443
No 164
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.57 E-value=1.8e-07 Score=79.72 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=32.5
Q ss_pred EECCCCEECCCcee-eccEECCCCEECCCcEEcCCC
Q 039842 166 SIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGS 200 (284)
Q Consensus 166 ~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv 200 (284)
.||++|+||.+++| .+++||+++.||+|++|..++
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDV 237 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDV 237 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccceEEecc
Confidence 79999999999877 789999999999999998877
No 165
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.57 E-value=1.2e-07 Score=75.84 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=82.4
Q ss_pred ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842 90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER 169 (284)
Q Consensus 90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~ 169 (284)
.+.|.+.+++-..+.|+|| ++|+++|++.+.+++-+... +++||+
T Consensus 8 svkIap~AvVCvEs~irGd---vti~~gcVvHP~a~~iA~aG--------------------------------PI~iGE 52 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGD---VTIKEGCVVHPFAVFIATAG--------------------------------PIYIGE 52 (190)
T ss_pred eeeecCceEEEEecccccc---eEecCCcEecceEEEEcccC--------------------------------CEEEcc
Confidence 4667777777778888888 99999999999999876543 699999
Q ss_pred CCEECCCceee--------------ccEECCCCEECCCcE-----EcCCCEECCCCEEcCCCeeCCCCeeCCCCEEecc
Q 039842 170 FVTIGAYCSLR--------------SCTIEPECIIGQHSI-----LMEGSMVETHAILEAGSVLPPGRRIPTGELWAGN 229 (284)
Q Consensus 170 ~v~Ig~~~~I~--------------~v~Igd~v~IG~~s~-----I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~ 229 (284)
++.|.+.++|. +-.||++.+..-+|. +++.-+|+..|.++.|+.|..++.|++++-+.+.
T Consensus 53 nniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~ 131 (190)
T KOG4042|consen 53 NNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSH 131 (190)
T ss_pred CchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecc
Confidence 99999999883 368999988777775 5666667777777777777777777777666654
No 166
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=3.6e-07 Score=84.52 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=51.7
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
|.......|++++..+..+ .++.|..||+|.|.....+|+.++.|+++++|.
T Consensus 276 IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~--------------------------- 327 (393)
T COG0448 276 IYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE--------------------------- 327 (393)
T ss_pred eeecCCCCCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE---------------------------
Confidence 3334444555555444442 245555555555433335666666666666663
Q ss_pred ccccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCC
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEG 199 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~g 199 (284)
+++|..+|.||.+|+|+.++|.++|.|+.|+.|+.+
T Consensus 328 ---------~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 328 ---------NSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred ---------eeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 366667777777777777777777766666666554
No 167
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.52 E-value=5.4e-07 Score=84.21 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=43.5
Q ss_pred ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842 164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLP 215 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~ 215 (284)
+++|+++|.|+++|.|..++|+++|.|+.++.+ .+++||++++|++++.+.
T Consensus 304 ~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i-~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 304 NSILSRGVHVGKDALIKNCIIMQRTVIGEGAHL-ENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred CCEECCCCEECCCCEEEeeEEeCCCEECCCCEE-EEEEECCCCEECCCCEeC
Confidence 478999999999999999999999999999887 458888888888887775
No 168
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.52 E-value=4.1e-07 Score=86.78 Aligned_cols=55 Identities=11% Similarity=0.325 Sum_probs=47.5
Q ss_pred ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCe
Q 039842 164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRR 219 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~ 219 (284)
+++||++|.|+++|.|.+++|+++|.||.+|.| .+++|+++|.|+++++|+++..
T Consensus 343 ~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 343 RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred CCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECCCCC
Confidence 478999999999999999999999999999988 5688888888888888876544
No 169
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.51 E-value=5.5e-07 Score=85.92 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=56.7
Q ss_pred ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcceEECC
Q 039842 90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAETSIER 169 (284)
Q Consensus 90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~ 169 (284)
++.||++|.| +++.|. + .+||++|.|+++|.|. +++|++
T Consensus 327 ~s~i~~~~~i-~~~~i~-~---svi~~~~~I~~~~~i~------------------------------------~svi~~ 365 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR-R---SVLFSRVRVNSFSNVE------------------------------------DSVLLP 365 (425)
T ss_pred eCEEcCCcEE-cCcccc-C---CEECCCCEECCCCEEe------------------------------------eeEEcC
Confidence 5677777777 577664 3 7788899998888884 488999
Q ss_pred CCEECCCceeeccEECCCCEECCCcEEcCCCE
Q 039842 170 FVTIGAYCSLRSCTIEPECIIGQHSILMEGSM 201 (284)
Q Consensus 170 ~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~ 201 (284)
+|.||++|.|..++|+++|.|+.++.|++++.
T Consensus 366 ~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 366 DVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred CCEECCCCEEeeEEECCCCEECCCCEECCCCC
Confidence 99999999999988888888888777765543
No 170
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.50 E-value=4.9e-07 Score=84.52 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcc
Q 039842 77 VDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSL 156 (284)
Q Consensus 77 ~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 156 (284)
+.++|++++.| .++.||++|.|+ ..|. + .+||++|.|+++|.|.
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~-~---s~i~~~~~I~~~~~i~----------------------------- 320 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIE--GKVE-N---SILSRGVHVGKDALIK----------------------------- 320 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEe--eEEe-C---CEECCCCEECCCCEEE-----------------------------
Confidence 44555555554 344455555553 1232 2 6788888888888884
Q ss_pred ccccCCcceEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842 157 YIAWLPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM 197 (284)
Q Consensus 157 ~~~~~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~ 197 (284)
+++|++++.|++++.+.+++||+++.||+++.+.
T Consensus 321 -------~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 321 -------NCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred -------eeEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence 4788999999999888888888888888877773
No 171
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.47 E-value=7.2e-07 Score=84.63 Aligned_cols=51 Identities=8% Similarity=0.264 Sum_probs=46.2
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCC
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPP 216 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~ 216 (284)
++||++|.|+.+|.|.+++|+++|.||.+|.| .+++|++++.|+++++|+.
T Consensus 332 svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 332 SVLSPNVVVESGAEVEDSVLMDGVRIGRGAVV-RRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CEECCCCEECCCCEEeeeEECCCCEECCCCEE-EeeEECCCCEECCCCEECC
Confidence 78999999999999999999999999999998 5689999999999988874
No 172
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.44 E-value=1.6e-06 Score=82.84 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=14.3
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEe
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLR 106 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~ 106 (284)
|++++.| +++.|. ++.||++|.|++++.|.
T Consensus 311 ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~ 340 (429)
T PRK02862 311 IAEGCII-KNCSIH-HSVLGIRSRIESGCTIE 340 (429)
T ss_pred ECCCCEE-CCcEEE-EEEEeCCcEECCCCEEE
Confidence 3444444 333332 34555555555555554
No 173
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.40 E-value=6.2e-07 Score=80.74 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=65.6
Q ss_pred cEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCccccccCCcc
Q 039842 85 VVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAWLPAE 164 (284)
Q Consensus 85 a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+.+.+++.+.+-+.+|.+|.|..+ ++||.+|.|++++.|. +
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~---vvIG~r~~i~~gV~l~------------------------------------~ 299 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPN---VVIGPRVRIEDGVRLQ------------------------------------D 299 (371)
T ss_pred ccccccEeeccccccCCccEECCC---ceECCCcEecCceEEE------------------------------------e
Confidence 333344444433444444444333 5566777777777774 3
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
++|-.+++++..+.|..+.+|-++.||.++.|-..++||++++|.....|.++...|
T Consensus 300 s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g~~l~ 356 (371)
T KOG1322|consen 300 STILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEGSGLP 356 (371)
T ss_pred eEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccceeEE
Confidence 667777788888888888888888888888888888888888887766666554443
No 174
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-06 Score=77.04 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=69.6
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCC
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSN 154 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (284)
|++++.++|+++|++||+||.++.|++|+.|+ + .+|=++|.|.+|+++-
T Consensus 291 IhPsakvhptAkiGPNVSIga~vrvg~GvRl~-~---sIIl~d~ei~enavVl--------------------------- 339 (407)
T KOG1460|consen 291 IHPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-E---SIILDDAEIEENAVVL--------------------------- 339 (407)
T ss_pred EcCcceeCCccccCCCceecCCceecCCceee-e---eeeccCcEeeccceEE---------------------------
Confidence 67777777778888888888888888888886 4 6778888888888773
Q ss_pred ccccccCCcceEECCCCEECCCceeec--cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCee
Q 039842 155 SLYIAWLPAETSIERFVTIGAYCSLRS--CTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRI 220 (284)
Q Consensus 155 ~~~~~~~~~~v~Ig~~v~Ig~~~~I~~--v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I 220 (284)
+++||-.+.||..+.+.+ +.--.+-.-.+-++.+.+|.+++.|.|- ++.|.+++.+
T Consensus 340 ---------~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~-~s~vlp~k~l 397 (407)
T KOG1460|consen 340 ---------HSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVL-NSIVLPNKEL 397 (407)
T ss_pred ---------eeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEe-eeeEecCCcc
Confidence 378888888888777743 2222222222334445555566555554 4444444444
No 175
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.36 E-value=3.9e-07 Score=55.36 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=17.3
Q ss_pred cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLP 215 (284)
Q Consensus 182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~ 215 (284)
++|||+|+||++|.| ++.|||+|+|++|++|.
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEE
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEEc
Confidence 456666666666666 46666666666666654
No 176
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.26 E-value=1e-06 Score=53.57 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=24.4
Q ss_pred ceEECCCCEECCCceeeccEECCCCEECCCcEEc
Q 039842 164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILM 197 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~ 197 (284)
+++||++|+||++|.+ +++|||+|.|++|++|.
T Consensus 1 pv~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI-GITIGDGVIIGAGVVIT 33 (34)
T ss_dssp TEEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred CeEECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence 3789999999999998 79999999999888874
No 177
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=8.3e-06 Score=75.61 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=70.3
Q ss_pred EcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEecCCCCCcccccceeeeecccccCCCCCcccccc
Q 039842 81 VAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHAAWNSPYRFVGFVSLLIDLQMSCPRSNSLYIAW 160 (284)
Q Consensus 81 I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
-.++-.|......-+.+.+..++.+. + ..|+++|+|.- .|
T Consensus 270 yd~~w~IyT~~~~~pPak~~~~s~v~-n---SLv~~GciI~G--~V---------------------------------- 309 (393)
T COG0448 270 YDRNWPIYTKNKNLPPAKFVNDSEVS-N---SLVAGGCIISG--TV---------------------------------- 309 (393)
T ss_pred cCCCCceeecCCCCCCceEecCceEe-e---eeeeCCeEEEe--EE----------------------------------
Confidence 45555566666666666666666653 2 44555555544 22
Q ss_pred CCcceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCC
Q 039842 161 LPAETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPG 217 (284)
Q Consensus 161 ~~~~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~ 217 (284)
.+++|+.++.|+.+|+|..++|-.+|.||.+|.| ..|+|.++|+|++|++|+..
T Consensus 310 --~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l-~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 310 --ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVL-RRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred --EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEE-EEEEeCCCcEeCCCcEEcCC
Confidence 2589999999999999999999999999999988 56999999999999988855
No 178
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.08 E-value=1.9e-06 Score=52.82 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=25.1
Q ss_pred cEECCCCEECCCcEEcCCCEECCCCEEcCCCeeC
Q 039842 182 CTIEPECIIGQHSILMEGSMVETHAILEAGSVLP 215 (284)
Q Consensus 182 v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~ 215 (284)
++||++|+|+.++.|.+++.||++++|+++++|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 5677777777777777778788777777777764
No 179
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.07 E-value=4.9e-06 Score=75.07 Aligned_cols=56 Identities=20% Similarity=0.094 Sum_probs=28.8
Q ss_pred eEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeC
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIP 221 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~ 221 (284)
++|+++|.|.+..++.+..+++++|| +.+.++.++.||.+++|..++++++++.|.
T Consensus 289 ~~i~~gV~l~~s~il~~~~~~~~s~i-~s~ivg~~~~IG~~~~id~~a~lG~nV~V~ 344 (371)
T KOG1322|consen 289 VRIEDGVRLQDSTILGADYYETHSEI-SSSIVGWNVPIGIWARIDKNAVLGKNVIVA 344 (371)
T ss_pred cEecCceEEEeeEEEccceechhHHH-HhhhccccccccCceEEecccEeccceEEe
Confidence 55555555555555555556655555 334444445555555444444444444443
No 180
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.73 E-value=2.9e-05 Score=47.43 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=23.3
Q ss_pred ceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEe
Q 039842 90 QVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLH 127 (284)
Q Consensus 90 ~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~ 127 (284)
++.||+++.|++++.|.++ +.||++|.|+++++|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGG---VVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETT---EEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCC---CEECCCCEEcCCCEEC
Confidence 3566777777777777655 7777777777777764
No 181
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.41 E-value=0.001 Score=57.38 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=34.9
Q ss_pred ECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEcCCCeeCCCCeeCCCCEEeccCceeec
Q 039842 167 IERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILEAGSVLPPGRRIPTGELWAGNPARFVR 235 (284)
Q Consensus 167 Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V~~~~~I~~~~vv~G~pa~~~~ 235 (284)
+..++.|+.+|.+ .+++.+.++.||..+.|.+..++...--|++.+.|.. .-+..+-++.-+|..+..
T Consensus 53 va~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieg-gfva~g~Ivirnpvpvl~ 121 (277)
T COG4801 53 VAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEG-GFVAKGWIVIRNPVPVLE 121 (277)
T ss_pred EecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEec-CeeecceEEEcCCccEEE
Confidence 3344445554444 2345555666666665555555544444444444432 223345566777776554
No 182
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.95 E-value=0.0023 Score=55.25 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=22.5
Q ss_pred eEECCCCEECCCcee-eccEECCCCEECCCcEEcCCCEECCCCEEc
Q 039842 165 TSIERFVTIGAYCSL-RSCTIEPECIIGQHSILMEGSMVETHAILE 209 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I-~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~ 209 (284)
+.|+..|.+..|+.+ ....||+++.|+..-++..+-.||+++.|.
T Consensus 57 iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ie 102 (277)
T COG4801 57 IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIE 102 (277)
T ss_pred eeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEe
Confidence 444555555555444 234555555555555555555555555444
No 183
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=87.66 E-value=1.6 Score=41.64 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=27.7
Q ss_pred ceEECCCCEECCCceeeccEECCCCEECCCcEEcCCCEECC
Q 039842 164 ETSIERFVTIGAYCSLRSCTIEPECIIGQHSILMEGSMVET 204 (284)
Q Consensus 164 ~v~Ig~~v~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~ 204 (284)
+++|..++.+|++++|..+.|+.++.||.+|+|. |+.+.+
T Consensus 284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~ 323 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINS 323 (414)
T ss_pred EeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCcccc
Confidence 3667777777777777777777777777777763 343333
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=86.76 E-value=1.1 Score=42.68 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=22.8
Q ss_pred EECCCceeeccEECCCCEECCCcEEcCCCEECCCCEEcCCCee
Q 039842 172 TIGAYCSLRSCTIEPECIIGQHSILMEGSMVETHAILEAGSVL 214 (284)
Q Consensus 172 ~Ig~~~~I~~v~Igd~v~IG~~s~I~~gv~Ig~~~~I~a~s~V 214 (284)
.+.+.+.|-++.|..++.+|.+++| ++|.|+.++.||.+++|
T Consensus 275 ~~~~~~~VinSil~~~~~vg~~svI-e~s~l~~~~~IG~~cIi 316 (414)
T PF07959_consen 275 DSEASSCVINSILEGGVSVGPGSVI-EHSHLGGPWSIGSNCII 316 (414)
T ss_pred ccCCCeeEEEeEecCCceECCCCEE-EeeecCCCCEECCCCEE
Confidence 4455566666666666666666654 33444444444444443
No 185
>PF04613 LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ; InterPro: IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis []: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] This enzyme contains several hexapeptide repeats and forms part of the wider bacterial transferase hexapeptide repeat family. This entry represents the non-repeating region of the enzyme.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0009245 lipid A biosynthetic process; PDB: 3PMO_A 3EH0_B 2IU9_A 2IU8_B 2IUA_A.
Probab=84.99 E-value=0.064 Score=38.04 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=22.7
Q ss_pred ChhhhhhhHhhhhhhcccchhhhhhhhhhhhhhc
Q 039842 1 MAALARITRRALTTQLSHGHVIRRAFSTSAAATA 34 (284)
Q Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (284)
+++|+.+++.+++|+.+. +|...+..++|++.
T Consensus 8 va~l~~A~~~~isF~~~~--ky~~~l~~s~A~av 39 (72)
T PF04613_consen 8 VAPLEEAGPGDISFLDNP--KYLKELKNSKAGAV 39 (72)
T ss_dssp EE-TTT--TTEEEEE-SS--CGGGGGGG---SEE
T ss_pred ecChhhcCCCCEEEecCH--HHHHHHHhCCCeEE
Confidence 368999999999999998 99999999998887
No 186
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=84.39 E-value=3.6 Score=30.00 Aligned_cols=16 Identities=50% Similarity=0.650 Sum_probs=13.4
Q ss_pred eeCCCCEEeccCceee
Q 039842 219 RIPTGELWAGNPARFV 234 (284)
Q Consensus 219 ~I~~~~vv~G~pa~~~ 234 (284)
+|||++++.|+|+++.
T Consensus 1 DVpPf~~~~G~~a~~~ 16 (83)
T PF13720_consen 1 DVPPFMLVAGNPARIR 16 (83)
T ss_dssp BB-TTEEEETTTTEEE
T ss_pred CCCCeEEecCCccEEe
Confidence 6899999999999865
No 187
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=69.19 E-value=19 Score=26.81 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=22.6
Q ss_pred cEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEE
Q 039842 79 AYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVL 126 (284)
Q Consensus 79 ~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I 126 (284)
+.|.+++.+.+++....+..|... +.|+ +.......|+.++.|
T Consensus 3 ~~I~~~~~i~G~i~~~~~v~i~G~--v~G~---i~~~g~v~i~~~~~v 45 (101)
T PF04519_consen 3 TIIGKGTKIEGDISSDGDVRIDGR--VEGN---IKAEGKVKIGGNGEV 45 (101)
T ss_pred EEECCCCEEEEEEEECcEEEEEEE--EEEE---EEEceEEEEcCCCEE
Confidence 466667777666666655555332 4444 433233444444444
No 188
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=56.48 E-value=53 Score=26.62 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=30.0
Q ss_pred eCCCcEEcCCcEEecceEECCCCEECCCCEEecCCCcEEECCCCEECCCCEEec
Q 039842 75 VAVDAYVAPNVVLAGQVTVCDGASVWPGSVLRGDLNKITVGFCSNVQERCVLHA 128 (284)
Q Consensus 75 i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~ 128 (284)
....+.|..++++.+++.......|.- .+.|+ +.-...++|++...|..
T Consensus 20 ~~~~tli~~g~~f~G~l~f~~~l~IdG--~~~G~---v~s~~~iiv~~~g~V~g 68 (146)
T COG1664 20 LKPETLIGAGTTFKGELVFEGPLRIDG--TFEGD---VHSDGGIVVGESGRVEG 68 (146)
T ss_pred CCCCeEEecCCEEEEEEEecceEEEeE--EEEEE---EEeCCCEEECCccEEEE
Confidence 456678888888887777766555543 44444 33333366666666653
No 189
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=49.18 E-value=37 Score=25.20 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=12.4
Q ss_pred eEECCCCEECCCceeeccEECCCCEE
Q 039842 165 TSIERFVTIGAYCSLRSCTIEPECII 190 (284)
Q Consensus 165 v~Ig~~v~Ig~~~~I~~v~Igd~v~I 190 (284)
+.....+.|+.++.+++-...+++.|
T Consensus 31 i~~~g~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 31 IKAEGKVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEceEEEEcCCCEEEEEEEEeEEEE
Confidence 33333455555555554444444444
No 190
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=47.01 E-value=24 Score=37.40 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=7.5
Q ss_pred CeeCCCCEEeccC
Q 039842 218 RRIPTGELWAGNP 230 (284)
Q Consensus 218 ~~I~~~~vv~G~p 230 (284)
..||+++++...|
T Consensus 379 ~~vP~~~ci~~vp 391 (974)
T PRK13412 379 LDLPEGVCIDVVP 391 (974)
T ss_pred eecCCCcEEEEEE
Confidence 4566666665544
No 191
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=33.61 E-value=56 Score=34.79 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=28.7
Q ss_pred cceEECCCCEECCC-ceeeccEECCCCEECCCcEEc
Q 039842 163 AETSIERFVTIGAY-CSLRSCTIEPECIIGQHSILM 197 (284)
Q Consensus 163 ~~v~Ig~~v~Ig~~-~~I~~v~Igd~v~IG~~s~I~ 197 (284)
.++++...+.++.+ ++|..+.|+.++.||.+++|.
T Consensus 335 ~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iis 370 (974)
T PRK13412 335 QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIIT 370 (974)
T ss_pred EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEe
Confidence 46788888888887 448889999999999999874
Done!