BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039845
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S93|A Chain A, Crystal Structure Of Conserved Motif In Tdrd5
pdb|3S93|B Chain B, Crystal Structure Of Conserved Motif In Tdrd5
Length = 102
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 111 RKQLCLAKEASILLMVAHDGFSISELCLRYLLASSN 146
R Q CL KE LL+ DG S EL YLL N
Sbjct: 7 RIQECLRKEIRSLLISTKDGLSPQELEKEYLLMVGN 42
>pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
pdb|3P7Z|B Chain B, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
Length = 276
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 167 YLGKWLKKFETFPQIAIDNPSTLYPCNC 194
+L KW F FP A DN S +Y NC
Sbjct: 97 FLSKW---FVVFPGFAYDNVSAVYIYNC 121
>pdb|3PEG|B Chain B, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
pdb|3PEG|A Chain A, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
Length = 290
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 167 YLGKWLKKFETFPQIAIDNPSTLYPCNC 194
+L KW F FP A DN S +Y NC
Sbjct: 97 FLSKW---FVVFPGFAYDNVSAVYIYNC 121
>pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
pdb|2E2X|B Chain B, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
Length = 277
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 167 YLGKWLKKFETFPQIAIDNPSTLYPCNC 194
+L KW F FP A DN S +Y NC
Sbjct: 98 FLSKW---FVVFPGFAYDNVSAVYIYNC 122
>pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
pdb|2D4Q|B Chain B, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
Length = 257
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 167 YLGKWLKKFETFPQIAIDNPSTLYPCNC 194
+L KW F FP A DN S +Y NC
Sbjct: 78 FLSKW---FVVFPGFAYDNVSAVYIYNC 102
>pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
pdb|3PG7|B Chain B, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
Length = 256
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 167 YLGKWLKKFETFPQIAIDNPSTLYPCNC 194
+L KW F FP A DN S +Y NC
Sbjct: 78 FLSKW---FVVFPGFAYDNVSAVYIYNC 102
>pdb|2G2W|A Chain A, Crystal Structure Of The Shv D104k
Beta-lactamase/beta-lactamase Inhibitor Protein (blip)
Complex
Length = 265
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 97 ALLAIEKASDENPSRK----QLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVML 152
A+LA A DE RK Q L K + + DG ++ ELC + S N +L
Sbjct: 54 AVLARVDAGDEQLERKIHYRQQDLVKYSPVSEKHLADGMTVGELCAAAITMSDNSAANLL 113
Query: 153 SSAISNLNGMS-LIRYLGKWLKKFETF 178
+ + G++ +R +G + + + +
Sbjct: 114 LATVGGPAGLTAFLRQIGDNVTRLDRW 140
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 144 SSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETF--PQIAIDNPSTLY 190
S+ + EVML +++LN ++RY WL++ F P A+ STL+
Sbjct: 47 STILSEVML---LASLNHQYVVRYYAAWLER-RNFVKPMTAVKKKSTLF 91
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 144 SSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETF--PQIAIDNPSTLY 190
S+ + EVML +++LN ++RY WL++ F P A+ STL+
Sbjct: 47 STILSEVML---LASLNHQYVVRYYAAWLER-RNFVKPMTAVKKKSTLF 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,580,700
Number of Sequences: 62578
Number of extensions: 187079
Number of successful extensions: 399
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 9
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)