Query 039845
Match_columns 210
No_of_seqs 15 out of 17
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 03:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qjt_A EH1, epidermal growth f 51.0 32 0.0011 23.8 5.2 70 128-201 24-98 (99)
2 3vej_A Ubiquitin-like protein 39.1 47 0.0016 22.1 4.2 30 56-94 8-38 (41)
3 1pb6_A Hypothetical transcript 32.6 1.3E+02 0.0044 21.1 7.5 76 75-152 119-194 (212)
4 2cc6_A VNG1446H, dodecin; flav 30.0 23 0.0008 25.3 1.7 17 91-107 14-30 (68)
5 3onr_A Protein transport prote 29.5 24 0.00081 25.5 1.7 17 91-107 16-32 (72)
6 2ux9_A Dodecin; flavoprotein; 29.5 24 0.00082 25.3 1.7 17 91-107 16-32 (69)
7 2qtq_A Transcriptional regulat 29.3 1.5E+02 0.005 20.8 7.5 68 79-148 124-191 (213)
8 2yiz_A Dodecin; flavoprotein, 27.9 27 0.00091 25.0 1.7 17 91-107 16-32 (69)
9 2vxa_A Dodecin; flavoprotein, 27.8 27 0.00091 25.2 1.7 17 91-107 17-33 (72)
10 2oa4_A SIR5; structure, struct 26.0 66 0.0023 24.2 3.7 46 118-184 38-83 (101)
11 3fap_B FRAP, FKBP12-rapamycin 24.6 23 0.0008 26.2 0.9 55 93-148 5-77 (94)
12 1nov_D Nodamura virus coat pro 24.5 40 0.0014 22.9 2.0 14 54-67 2-15 (44)
13 1f8v_D Mature capsid protein g 22.8 30 0.001 23.1 1.1 14 54-67 2-15 (40)
14 2z2q_B Coat protein gamma; wil 22.5 45 0.0016 22.6 1.9 14 54-67 2-15 (44)
15 2fyu_K Ubiquinol-cytochrome C 20.1 1.1E+02 0.0036 21.1 3.5 30 34-63 2-31 (56)
No 1
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=51.02 E-value=32 Score=23.81 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=40.4
Q ss_pred hcCCChhhHHHHHHHhcCCcchhHHHHhhhccc----h-hhHHHHHHHHHHhhhcCCccccCCCCCccccCccccCCcc
Q 039845 128 HDGFSISELCLRYLLASSNIDEVMLSSAISNLN----G-MSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIPLPLFS 201 (210)
Q Consensus 128 ~DgFt~sElCLHyL~AS~nvDe~vL~aaVseLd----g-~~LiRYL~KWl~KY~rFpqa~~~~~~~~~~~~~~~~~~~~ 201 (210)
.||+-+.+-.-+.+-.++ +++..+..++.+.| | +++-.|+.-.-.. ..-|.|..-|.+.-| ..+|.|-|.
T Consensus 24 ~dG~Is~~el~~~l~~~~-l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~--~~~~~g~~~~~~~l~-~~~p~p~~~ 98 (99)
T 1qjt_A 24 NTGRVLALDAAAFLKKSG-LPDLILGKIWDLADTDGKGVLSKQEFFVALRLV--ACAQNGLEVSLSSLS-LAVPPPRFH 98 (99)
T ss_dssp TSSCCCSHHHHHHHHTSS-SCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH--HHHTTTCCSSGGGCS-SCCCCCSSC
T ss_pred CCCcCCHHHHHHHHHHcC-CCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH--HHHHcCCCCChhhcc-CCCCCCCCC
Confidence 357766666666665554 67777777777754 3 3333333222111 222567666655556 678888775
No 2
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=39.13 E-value=47 Score=22.07 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhh-hhHHHHHHHHH
Q 039845 56 WELVETLIVHGLLLCILKYFLCPLQDAY-GSMGSVRMEWE 94 (210)
Q Consensus 56 WelVe~Li~~gllL~iLk~FL~psk~ay-~sm~~Vr~~We 94 (210)
|+-+|+|+.|- +.....|. ..|+..+++|+
T Consensus 8 Wd~Ie~lL~~~---------~~d~~~a~~~~L~RLqkGWe 38 (41)
T 3vej_A 8 WDDIEALLKNN---------FENDQAAVRQVMERLQKGWS 38 (41)
T ss_dssp HHHHHHHHHHH---------TTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------hcChHHHHHHHHHHHHhccc
Confidence 99999998885 34444554 88999999997
No 3
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=32.65 E-value=1.3e+02 Score=21.13 Aligned_cols=76 Identities=7% Similarity=-0.035 Sum_probs=40.5
Q ss_pred hhccchhhhhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHhcCCcchhHH
Q 039845 75 FLCPLQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVML 152 (210)
Q Consensus 75 FL~psk~ay~sm~~Vr~~We~~A~LAIekas~knl~kK~~~vAk~AaiLLmva~DgFt~sElCLHyL~AS~nvDe~vL 152 (210)
.....++....+....+.|.......++.+.+.+.-+. .-+...+..+.-...|+.....-.+.+......|+.-+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (212)
T 1pb6_A 119 MLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAP--IDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFF 194 (212)
T ss_dssp HHTTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSCS--CCHHHHHHHHHHHHHHHHHTHHHHHHHHSCCTTSHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--cCHHHHHHHHHHHhhhHHHhHHhHHHHhCcCcchHHHH
Confidence 34444555666666677777777777777765543222 22233344444445555554454555544444444333
No 4
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=29.97 E-value=23 Score=25.28 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccC
Q 039845 91 MEWESQALLAIEKASDE 107 (210)
Q Consensus 91 ~~We~~A~LAIekas~k 107 (210)
+.|++|+.+||++|++.
T Consensus 14 ~S~edAi~nAi~~AskT 30 (68)
T 2cc6_A 14 ESFTAAADDAIDRAEDT 30 (68)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 57999999999999864
No 5
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=29.53 E-value=24 Score=25.52 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccC
Q 039845 91 MEWESQALLAIEKASDE 107 (210)
Q Consensus 91 ~~We~~A~LAIekas~k 107 (210)
+.|++|+.+||++|++.
T Consensus 16 ~S~edAi~nAi~~AskT 32 (72)
T 3onr_A 16 TSWEQAAAEAVQRARDS 32 (72)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 57999999999999864
No 6
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=29.46 E-value=24 Score=25.27 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccC
Q 039845 91 MEWESQALLAIEKASDE 107 (210)
Q Consensus 91 ~~We~~A~LAIekas~k 107 (210)
+.|++|+..||++|++.
T Consensus 16 ~S~edAi~nAi~~AskT 32 (69)
T 2ux9_A 16 EGLEAAIQAALARARKT 32 (69)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 57999999999999864
No 7
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=29.34 E-value=1.5e+02 Score=20.76 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=34.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHhcCCcc
Q 039845 79 LQDAYGSMGSVRMEWESQALLAIEKASDENPSRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNID 148 (210)
Q Consensus 79 sk~ay~sm~~Vr~~We~~A~LAIekas~knl~kK~~~vAk~AaiLLmva~DgFt~sElCLHyL~AS~nvD 148 (210)
.+.....+....+.|.+.....++.+.+.+.-+ ..-+..++.+++-..+|+...-..++++......|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (213)
T 2qtq_A 124 EAEAKRIADQYLLPLHRAYNRFIGEGVKAGVFR--PINPQLFYFTVTGAADRFFSARLVLKHCFDQDTLT 191 (213)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSBC--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHhhHHhhHHHHHHHhCccccC
Confidence 344445556667777777777777765544322 21223344445555555544433344444433333
No 8
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=27.95 E-value=27 Score=25.05 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccC
Q 039845 91 MEWESQALLAIEKASDE 107 (210)
Q Consensus 91 ~~We~~A~LAIekas~k 107 (210)
+.|++|+..||++|++.
T Consensus 16 ~S~edAi~nAi~~AskT 32 (69)
T 2yiz_A 16 DGVDAAIQGGLARAAQT 32 (69)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 57999999999999864
No 9
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=27.78 E-value=27 Score=25.22 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccC
Q 039845 91 MEWESQALLAIEKASDE 107 (210)
Q Consensus 91 ~~We~~A~LAIekas~k 107 (210)
+.|++|+..||++|++.
T Consensus 17 ~S~edAi~nAi~~AskT 33 (72)
T 2vxa_A 17 NGIEEAVNNAIARAGET 33 (72)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 57999999999999864
No 10
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=26.00 E-value=66 Score=24.20 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHhcCCcchhHHHHhhhccchhhHHHHHHHHHHhhhcCCccccC
Q 039845 118 KEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAID 184 (210)
Q Consensus 118 k~AaiLLmva~DgFt~sElCLHyL~AS~nvDe~vL~aaVseLdg~~LiRYL~KWl~KY~rFpqa~~~ 184 (210)
+.++|+..|-..+-|-.|.|-||=+ |+ .=+..|.++|++.-+++.-
T Consensus 38 rK~~VV~~v~~g~lS~~EAa~ry~I-s~--------------------~ei~~W~r~y~~~G~~aLr 83 (101)
T 2oa4_A 38 RKIAVVRGVIYGLITLAEAKQTYGL-SD--------------------EEFNSWVSALAEHGKDALK 83 (101)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHTTCS-SH--------------------HHHHHHHHHHHCCCSSSSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCC-CH--------------------HHHHHHHHHHHHHhHHHhc
Confidence 4677889999999999999999986 44 1246899999998777654
No 11
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=24.56 E-value=23 Score=26.21 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcc-----CCc-------------hhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHhcCCcc
Q 039845 93 WESQALLAIEKASD-----ENP-------------SRKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNID 148 (210)
Q Consensus 93 We~~A~LAIekas~-----knl-------------~kK~~~vAk~AaiLLmva~DgFt~sElCLHyL~AS~nvD 148 (210)
|+++--.++|.||. +|. -+|.-++.+|++..-+-|.|-..+-|-|.-|. .++|+.
T Consensus 5 W~E~W~e~LeeAsr~~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L~~A~~~~~~y~-~t~~~~ 77 (94)
T 3fap_B 5 WHEMWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYM-KSGNVK 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChh
Confidence 88888888888863 331 12223667888888889999999999998887 566554
No 12
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=24.52 E-value=40 Score=22.85 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHH
Q 039845 54 RIWELVETLIVHGL 67 (210)
Q Consensus 54 ~~WelVe~Li~~gl 67 (210)
.|||-|+.+|..|+
T Consensus 2 ~mWErVk~ilks~l 15 (44)
T 1nov_D 2 TFWERVRSILKSGL 15 (44)
T ss_pred cHHHHHHHHHHHHH
Confidence 48999999999987
No 13
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=22.82 E-value=30 Score=23.05 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHH
Q 039845 54 RIWELVETLIVHGL 67 (210)
Q Consensus 54 ~~WelVe~Li~~gl 67 (210)
.|||-|+.+|..|+
T Consensus 2 ~mWErVk~ilks~l 15 (40)
T 1f8v_D 2 KFWEGVLRVLNQIS 15 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHH
Confidence 48999999998886
No 14
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=22.52 E-value=45 Score=22.56 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHH
Q 039845 54 RIWELVETLIVHGL 67 (210)
Q Consensus 54 ~~WelVe~Li~~gl 67 (210)
.|||-|+.++..|+
T Consensus 2 ~~WErVk~ilks~l 15 (44)
T 2z2q_B 2 SMWERVKSIIKSSL 15 (44)
T ss_pred cHHHHHHHHHHHHH
Confidence 48999999999987
No 15
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=20.14 E-value=1.1e+02 Score=21.12 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=26.3
Q ss_pred hhhchhhhHHHHHHHhhhhhhhHHHHHHHH
Q 039845 34 VGFLMGRDVASLVLEACIRLRIWELVETLI 63 (210)
Q Consensus 34 ~G~~mgRdv~~lVl~~~vsL~~WelVe~Li 63 (210)
+..++|++-...+.++--++..|+.+..+-
T Consensus 2 ~~~~~g~~~~~~~~~w~psa~~~Gaaa~v~ 31 (56)
T 2fyu_K 2 LTRFLGPRYRQLARNWVPTASLWGAVGAVG 31 (56)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHhhhhhhhhhhhhhh
Confidence 356799999999999999999999987653
Done!