Query 039845
Match_columns 210
No_of_seqs 15 out of 17
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 03:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039845.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039845hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a6 a.24.9.1 (A:647-718) V 63.3 3.8 0.00028 27.9 3.9 32 75-106 37-69 (72)
2 d2jn6a1 a.4.1.19 (A:1-89) Unch 53.1 5 0.00037 26.4 3.0 55 111-186 4-58 (89)
3 d2cc6a1 d.230.2.1 (A:2-65) Fla 30.9 10 0.00076 25.1 1.7 17 91-107 13-29 (64)
4 d1gpma1 c.26.2.1 (A:208-404) G 30.4 6.1 0.00044 26.5 0.4 21 141-161 25-45 (197)
5 d1h6ga1 a.24.9.1 (A:377-507) a 30.4 22 0.0016 25.7 3.6 36 68-103 88-125 (131)
6 d2ux9a1 d.230.2.1 (A:2-67) Unc 27.6 13 0.00093 24.8 1.7 17 91-107 15-31 (66)
7 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 24.0 18 0.0013 23.0 1.8 28 119-149 11-39 (50)
8 d1vl2a1 c.26.2.1 (A:2-169) Arg 21.6 13 0.00098 23.5 0.8 18 143-160 8-25 (168)
9 d2daha1 a.5.2.1 (A:8-48) Ubiqu 21.3 20 0.0014 21.8 1.6 22 130-151 13-35 (41)
10 d1p8ba_ g.3.6.4 (A:) Pab1, sub 21.2 14 0.001 22.8 0.8 20 182-201 5-29 (37)
11 d1qjta_ a.39.1.6 (A:) Eps15 {M 20.8 91 0.0066 20.2 5.2 63 128-200 24-97 (99)
No 1
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=63.35 E-value=3.8 Score=27.88 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=26.3
Q ss_pred hhccc-hhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 039845 75 FLCPL-QDAYGSMGSVRMEWESQALLAIEKASD 106 (210)
Q Consensus 75 FL~ps-k~ay~sm~~Vr~~We~~A~LAIekas~ 106 (210)
..-|+ |.++.-|..+|+.|++++..-.+.+.+
T Consensus 37 ~~~P~sK~a~En~e~~~~~W~~~v~~l~~~vDe 69 (72)
T d1st6a6 37 LRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDE 69 (72)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566 999999999999999999887766544
No 2
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=53.14 E-value=5 Score=26.37 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHhcCCcchhHHHHhhhccchhhHHHHHHHHHHhhhcCCccccCCC
Q 039845 111 RKQLCLAKEASILLMVAHDGFSISELCLRYLLASSNIDEVMLSSAISNLNGMSLIRYLGKWLKKFETFPQIAIDNP 186 (210)
Q Consensus 111 kK~~~vAk~AaiLLmva~DgFt~sElCLHyL~AS~nvDe~vL~aaVseLdg~~LiRYL~KWl~KY~rFpqa~~~~~ 186 (210)
|+++.=-|+-+|-++..++|-|..|++-+|=+ |+ .-|.+|+++|..-....-..|
T Consensus 4 k~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGI-s~--------------------~tl~~W~k~~~~~~~~~~~~~ 58 (89)
T d2jn6a1 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGI-NR--------------------VTLKNWIIKYGSNHNVQGTTP 58 (89)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTS-CH--------------------HHHHHHHHHHCCCSTTCSCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCcHHHHHHHHCC-CH--------------------HHHHHHHHHHhhcccccCCCC
Confidence 34555557777888878889999999988843 22 236899999987654443333
No 3
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=30.94 E-value=10 Score=25.13 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccC
Q 039845 91 MEWESQALLAIEKASDE 107 (210)
Q Consensus 91 ~~We~~A~LAIekas~k 107 (210)
+.|++|+..||++|++.
T Consensus 13 ~S~edAi~~Ai~~AskT 29 (64)
T d2cc6a1 13 ESFTAAADDAIDRAEDT 29 (64)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 56999999999999875
No 4
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=30.38 E-value=6.1 Score=26.51 Aligned_cols=21 Identities=19% Similarity=0.204 Sum_probs=16.4
Q ss_pred HHhcCCcchhHHHHhhhccch
Q 039845 141 LLASSNIDEVMLSSAISNLNG 161 (210)
Q Consensus 141 L~AS~nvDe~vL~aaVseLdg 161 (210)
+.-||-|||+|+++...+..|
T Consensus 25 V~lSGGVDSsv~a~ll~~~~g 45 (197)
T d1gpma1 25 LGLSGGVDSSVTAMLLHRAIG 45 (197)
T ss_dssp EECCSSHHHHHHHHHHHHHHG
T ss_pred EEcCCCHHHHHHHHHHHHhcC
Confidence 346899999999888877555
No 5
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.38 E-value=22 Score=25.73 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=26.2
Q ss_pred HHHHHHH-hhccc-hhhhhhHHHHHHHHHHHHHHHHHH
Q 039845 68 LLCILKY-FLCPL-QDAYGSMGSVRMEWESQALLAIEK 103 (210)
Q Consensus 68 lL~iLk~-FL~ps-k~ay~sm~~Vr~~We~~A~LAIek 103 (210)
+...-|- ..-|+ |-|+.-|..+|+.|++++..=.+.
T Consensus 88 Vi~Aar~l~~~P~sk~a~en~e~~~~~W~~~v~~L~~~ 125 (131)
T d1h6ga1 88 VINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDA 125 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444453 34675 999999999999999998654443
No 6
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]}
Probab=27.59 E-value=13 Score=24.84 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccC
Q 039845 91 MEWESQALLAIEKASDE 107 (210)
Q Consensus 91 ~~We~~A~LAIekas~k 107 (210)
+.|++|+..||++|++.
T Consensus 15 ~S~edAi~~Ai~~AskT 31 (66)
T d2ux9a1 15 EGLEAAIQAALARARKT 31 (66)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhC
Confidence 56999999999999874
No 7
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.98 E-value=18 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHhc-CCcch
Q 039845 119 EASILLMVAHDGFSISELCLRYLLAS-SNIDE 149 (210)
Q Consensus 119 ~AaiLLmva~DgFt~sElCLHyL~AS-~nvDe 149 (210)
+-.-|-.| ||+.-|.|+..|.++ |||+-
T Consensus 11 QL~qL~~M---GF~d~~~Ni~AL~~t~GdV~~ 39 (50)
T d2dnaa1 11 EMECLQAM---GFVNYNANLQALIATDGDTNA 39 (50)
T ss_dssp HHHHHHHH---TCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHHHHcCCCHHH
Confidence 33344444 799999999999876 45543
No 8
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.55 E-value=13 Score=23.51 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=14.5
Q ss_pred hcCCcchhHHHHhhhccc
Q 039845 143 ASSNIDEVMLSSAISNLN 160 (210)
Q Consensus 143 AS~nvDe~vL~aaVseLd 160 (210)
-||-+||.|+.....|.+
T Consensus 8 lSGGvDS~vl~~lL~~~~ 25 (168)
T d1vl2a1 8 YSGGLDTSVILKWLCEKG 25 (168)
T ss_dssp CCSSHHHHHHHHHHHHTT
T ss_pred eccHHHHHHHHHHHHHcC
Confidence 488899999988887765
No 9
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.34 E-value=20 Score=21.83 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.4
Q ss_pred CCChhhHHHHHHHhc-CCcchhH
Q 039845 130 GFSISELCLRYLLAS-SNIDEVM 151 (210)
Q Consensus 130 gFt~sElCLHyL~AS-~nvDe~v 151 (210)
||+.-|.|+..|.++ |||+-+|
T Consensus 13 GF~d~~~Ni~AL~~t~Gdv~~Ai 35 (41)
T d2daha1 13 GFLNREANLQALIATGGDVDAAV 35 (41)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 899999999999765 5666543
No 10
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=21.22 E-value=14 Score=22.75 Aligned_cols=20 Identities=35% Similarity=0.844 Sum_probs=13.1
Q ss_pred ccCCCCCccc-----cCccccCCcc
Q 039845 182 AIDNPSTLYP-----CNCIPLPLFS 201 (210)
Q Consensus 182 ~~~~~~~~~~-----~~~~~~~~~~ 201 (210)
|+|.|-..-| |.|||.-||-
T Consensus 5 G~CSPFemPPCgs~dCRCiP~gL~~ 29 (37)
T d1p8ba_ 5 GVCSPFEMPPCGTSACRCIPVGLVI 29 (37)
T ss_dssp EEECTTCSSGGGCSSSEEECCSSSC
T ss_pred ccccccccCCCCCCCceEEEEEEEE
Confidence 3455544444 6899998874
No 11
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.80 E-value=91 Score=20.18 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=38.0
Q ss_pred hcCCChhhHHHHHHHhcCCcchhHHHHhhhccch-----------hhHHHHHHHHHHhhhcCCccccCCCCCccccCccc
Q 039845 128 HDGFSISELCLRYLLASSNIDEVMLSSAISNLNG-----------MSLIRYLGKWLKKFETFPQIAIDNPSTLYPCNCIP 196 (210)
Q Consensus 128 ~DgFt~sElCLHyL~AS~nvDe~vL~aaVseLdg-----------~~LiRYL~KWl~KY~rFpqa~~~~~~~~~~~~~~~ 196 (210)
.||+-+.|-.--++ .+.++.+-+|..+....|. ...|+... .-|.|..-|..+.|.. +|
T Consensus 24 ~~G~i~~~e~~~~l-~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li~--------~~q~g~~l~~~~l~~~-~p 93 (99)
T d1qjta_ 24 NTGRVLALDAAAFL-KKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVA--------CAQNGLEVSLSSLSLA-VP 93 (99)
T ss_dssp TSSCCCSHHHHHHH-HTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHH--------HHTTTCCSSGGGCSSC-CC
T ss_pred CCCcccHHHHHHHH-HHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHH--------HHHcCCCCCccccccC-CC
Confidence 45666666544444 5556888899999888554 22233332 1234555566666644 78
Q ss_pred cCCc
Q 039845 197 LPLF 200 (210)
Q Consensus 197 ~~~~ 200 (210)
+|-|
T Consensus 94 ~P~~ 97 (99)
T d1qjta_ 94 PPRF 97 (99)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8876
Done!