BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039847
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
 pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
          Length = 342

 Score = 33.1 bits (74), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 13  VPAANAFVTAVKPALEFLNI-----NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGK 67
           VP A  ++T+  P + F++I     N E  + G +L+   T+P G    E  IE  ++  
Sbjct: 208 VPWAGQYITS-NPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEHSIEDVQELV 266

Query: 68  LLKLSKVLP 76
             +L  +LP
Sbjct: 267 FQQLENILP 275


>pdb|3LHL|A Chain A, Crystal Structure Of A Putative Agmatinase From
           Clostridium Difficile
          Length = 287

 Score = 29.6 bits (65), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 6   TDMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTE 64
           TD+  E   + N+  T +K           WD  GDN +F+  + +GTK EE K  + E
Sbjct: 124 TDLREEYNNSKNSHATVIKRI---------WDIVGDNKIFQFGIRSGTK-EEFKFATEE 172


>pdb|4DZO|A Chain A, Structure Of Human Mad1 C-Terminal Domain Reveals Its
          Involvement In Kinetochore Targeting
 pdb|4DZO|B Chain B, Structure Of Human Mad1 C-Terminal Domain Reveals Its
          Involvement In Kinetochore Targeting
          Length = 123

 Score = 27.7 bits (60), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 37 DDAGDNLMFKATLPTGTKMEELKIE 61
          +  GD L+FKAT P+G+K + L+ E
Sbjct: 62 EHPGDCLIFKATSPSGSKXQLLETE 86


>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
 pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
           Complex With Mercaptoacetic Acid
          Length = 262

 Score = 26.2 bits (56), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 59  KIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKEC 96
           K+ +  DG+L+KL  +  +     G  E  + W  + C
Sbjct: 125 KVRAVADGELVKLGPLAVKAHATPGHTEGGITWTWQSC 162


>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
          Length = 367

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 7   DMDWELVPAANAFVTAVKPALEFLNINGEWDDAG------DNLMFKATLPTGTKMEELKI 60
           +M +E+ P ++    A KP  E   I  + D A       D L+FK+TL T  +M +  +
Sbjct: 253 NMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFKSTLDTDYQMTKRDM 312

Query: 61  ESTED 65
             TE+
Sbjct: 313 GFTEE 317


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,499,047
Number of Sequences: 62578
Number of extensions: 189289
Number of successful extensions: 377
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 17
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)