Query 039847
Match_columns 172
No_of_seqs 171 out of 1082
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:35:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 6.1E-28 1.3E-32 188.7 13.7 102 30-150 31-133 (142)
2 PRK10743 heat shock protein Ib 100.0 1.1E-27 2.3E-32 186.2 13.4 99 32-149 35-134 (137)
3 COG0071 IbpA Molecular chapero 100.0 1.8E-27 3.8E-32 185.4 13.7 105 30-149 39-143 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 2.1E-27 4.5E-32 171.5 12.1 92 33-138 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 1.1E-25 2.3E-30 162.3 11.6 93 32-138 1-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 8.2E-25 1.8E-29 157.9 12.1 89 32-138 1-90 (90)
7 PF00011 HSP20: Hsp20/alpha cr 99.9 1.1E-23 2.3E-28 153.2 12.0 99 35-150 1-100 (102)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.3E-22 2.8E-27 146.0 10.9 82 35-138 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 4.2E-22 9.1E-27 142.2 10.7 82 35-138 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 7.1E-22 1.5E-26 141.6 10.7 82 36-139 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 3.9E-22 8.4E-27 142.4 8.5 79 35-138 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 1.8E-21 3.8E-26 140.1 10.7 82 34-137 3-85 (86)
13 cd06481 ACD_HspB9_like Alpha c 99.9 2.3E-21 5E-26 139.7 9.8 83 38-138 4-87 (87)
14 cd06476 ACD_HspB2_like Alpha c 99.8 1E-20 2.3E-25 135.4 10.7 80 37-138 3-83 (83)
15 cd06464 ACD_sHsps-like Alpha-c 99.8 1.9E-20 4E-25 130.9 11.0 88 35-138 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 8.2E-21 1.8E-25 137.3 9.2 80 39-137 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 3.9E-20 8.5E-25 132.7 10.1 79 37-137 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 3.3E-20 7.1E-25 131.7 8.0 77 40-138 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 4.6E-20 1E-24 150.8 6.9 108 30-151 83-194 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 8.9E-16 1.9E-20 112.0 10.0 80 37-138 11-91 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.5 9.1E-14 2E-18 93.1 9.5 80 36-138 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.5 3.6E-13 7.8E-18 108.6 12.0 96 32-149 63-159 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.3E-11 2.7E-16 85.5 8.7 71 36-141 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.1 5.6E-10 1.2E-14 90.2 11.1 80 30-142 90-171 (177)
25 cd06463 p23_like Proteins cont 99.0 5.6E-09 1.2E-13 71.5 9.5 76 36-141 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 7.6E-08 1.6E-12 67.1 8.3 77 35-141 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.3 1.9E-05 4.1E-10 53.5 11.4 77 32-138 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.0 8.7E-05 1.9E-09 54.7 10.5 78 32-140 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 97.7 0.00037 8E-09 48.9 9.0 77 35-141 1-77 (84)
30 PF08190 PIH1: pre-RNA process 97.7 0.00022 4.7E-09 61.2 9.1 65 40-137 260-327 (328)
31 cd06467 p23_NUDC_like p23_like 97.5 0.0011 2.4E-08 46.1 8.8 75 35-141 2-77 (85)
32 cd06488 p23_melusin_like p23_l 97.5 0.0024 5.2E-08 45.4 10.4 79 33-141 2-80 (87)
33 cd06468 p23_CacyBP p23_like do 97.4 0.0035 7.6E-08 44.4 10.8 79 33-141 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.3 0.0034 7.5E-08 44.3 9.4 76 34-141 1-77 (85)
35 cd06494 p23_NUDCD2_like p23-li 96.9 0.015 3.2E-07 42.4 9.7 78 32-142 6-84 (93)
36 cd00237 p23 p23 binds heat sho 96.5 0.073 1.6E-06 39.6 10.8 79 31-141 1-79 (106)
37 PLN03088 SGT1, suppressor of 96.3 0.035 7.5E-07 48.9 9.4 81 31-141 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.1 0.026 5.6E-07 46.3 7.1 80 31-140 3-82 (196)
39 cd06490 p23_NCB5OR p23_like do 94.9 0.87 1.9E-05 32.3 10.9 79 34-141 1-80 (87)
40 cd06492 p23_mNUDC_like p23-lik 94.7 0.56 1.2E-05 33.5 9.4 74 36-141 3-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 93.3 1.8 3.9E-05 32.0 10.1 81 32-141 5-87 (102)
42 PF14913 DPCD: DPCD protein fa 81.7 16 0.00034 30.3 9.0 80 30-139 85-169 (194)
43 COG5091 SGT1 Suppressor of G2 80.4 1.4 3.1E-05 38.7 2.6 82 30-140 175-256 (368)
44 KOG1667 Zn2+-binding protein M 73.7 17 0.00037 31.7 7.3 84 30-142 213-296 (320)
45 PRK14290 chaperone protein Dna 67.7 38 0.00083 30.1 8.5 41 109-152 277-317 (365)
46 cd06482 ACD_HspB10 Alpha cryst 58.6 25 0.00054 25.1 4.7 33 106-141 10-42 (87)
47 KOG3158 HSP90 co-chaperone p23 56.8 53 0.0012 26.9 6.7 81 30-142 6-86 (180)
48 PF13349 DUF4097: Domain of un 56.3 84 0.0018 23.6 9.4 83 32-136 66-148 (166)
49 cd06526 metazoan_ACD Alpha-cry 55.8 24 0.00053 24.2 4.2 33 41-74 50-82 (83)
50 cd06472 ACD_ScHsp26_like Alpha 54.6 20 0.00044 25.1 3.6 32 40-73 59-90 (92)
51 PF00011 HSP20: Hsp20/alpha cr 53.7 63 0.0014 22.6 6.1 33 41-75 55-87 (102)
52 PF01954 DUF104: Protein of un 53.7 13 0.00027 25.1 2.3 15 121-135 3-17 (60)
53 cd06470 ACD_IbpA-B_like Alpha- 53.6 33 0.00072 24.1 4.6 34 106-142 13-46 (90)
54 cd06477 ACD_HspB3_Like Alpha c 53.6 26 0.00056 24.8 4.0 32 106-140 9-40 (83)
55 KOG2265 Nuclear distribution p 53.3 1.1E+02 0.0024 25.1 8.0 79 31-141 18-97 (179)
56 cd06464 ACD_sHsps-like Alpha-c 52.6 29 0.00064 23.1 4.1 33 40-74 55-87 (88)
57 cd06478 ACD_HspB4-5-6 Alpha-cr 52.2 32 0.0007 23.9 4.3 31 106-139 9-39 (83)
58 cd06476 ACD_HspB2_like Alpha c 51.1 29 0.00062 24.4 3.9 31 106-139 9-39 (83)
59 cd06497 ACD_alphaA-crystallin_ 50.6 31 0.00068 24.2 4.1 31 106-139 12-42 (86)
60 PF00347 Ribosomal_L6: Ribosom 46.8 50 0.0011 22.0 4.5 48 55-139 2-49 (77)
61 TIGR03654 L6_bact ribosomal pr 45.7 56 0.0012 26.2 5.3 18 56-75 12-29 (175)
62 PF04972 BON: BON domain; Int 45.7 34 0.00075 21.9 3.4 23 52-76 13-35 (64)
63 PRK14284 chaperone protein Dna 45.4 1.9E+02 0.0042 25.9 9.2 89 42-151 226-326 (391)
64 PRK05498 rplF 50S ribosomal pr 44.9 58 0.0013 26.1 5.3 22 47-75 9-30 (178)
65 cd06480 ACD_HspB8_like Alpha-c 44.8 55 0.0012 23.6 4.6 32 41-73 58-89 (91)
66 cd06471 ACD_LpsHSP_like Group 44.2 36 0.00078 23.7 3.6 30 41-73 62-91 (93)
67 cd06469 p23_DYX1C1_like p23_li 43.2 70 0.0015 21.1 4.8 33 41-75 36-68 (78)
68 PRK14298 chaperone protein Dna 42.6 1.8E+02 0.0039 26.0 8.6 91 42-153 213-313 (377)
69 cd06479 ACD_HspB7_like Alpha c 42.4 50 0.0011 23.1 4.0 31 106-139 10-40 (81)
70 PTZ00027 60S ribosomal protein 42.3 1.1E+02 0.0025 24.9 6.7 47 55-137 13-59 (190)
71 PF08308 PEGA: PEGA domain; I 41.8 89 0.0019 20.5 5.1 41 33-75 26-67 (71)
72 PRK10743 heat shock protein Ib 40.6 68 0.0015 24.7 4.9 32 106-140 47-78 (137)
73 cd06498 ACD_alphaB-crystallin_ 40.6 69 0.0015 22.4 4.5 30 106-138 9-38 (84)
74 KOG3413 Mitochondrial matrix p 40.0 14 0.00029 29.6 0.9 25 112-138 65-89 (156)
75 cd06475 ACD_HspB1_like Alpha c 39.5 60 0.0013 22.8 4.1 31 106-139 12-42 (86)
76 PRK14281 chaperone protein Dna 37.8 3E+02 0.0066 24.7 9.4 89 43-152 235-333 (397)
77 TIGR03653 arch_L6P archaeal ri 37.6 1.5E+02 0.0033 23.7 6.6 18 56-75 8-25 (170)
78 PRK14287 chaperone protein Dna 37.5 2.2E+02 0.0048 25.3 8.3 31 121-152 279-309 (371)
79 PTZ00179 60S ribosomal protein 37.4 1.5E+02 0.0032 24.2 6.6 18 56-75 13-30 (189)
80 PF01491 Frataxin_Cyay: Fratax 36.4 41 0.0009 24.9 3.0 18 122-139 31-48 (109)
81 PRK05518 rpl6p 50S ribosomal p 35.8 1.6E+02 0.0035 23.8 6.6 18 56-75 14-31 (180)
82 PRK14291 chaperone protein Dna 35.7 2.9E+02 0.0062 24.7 8.7 30 121-151 292-322 (382)
83 cd00503 Frataxin Frataxin is a 35.4 39 0.00086 24.9 2.7 18 121-138 28-45 (105)
84 PRK11597 heat shock chaperone 34.5 64 0.0014 25.1 3.9 31 106-139 45-75 (142)
85 TIGR03421 FeS_CyaY iron donor 34.3 41 0.00088 24.8 2.6 17 122-138 26-42 (102)
86 KOG3591 Alpha crystallins [Pos 33.2 74 0.0016 25.6 4.1 31 46-77 120-150 (173)
87 PRK14300 chaperone protein Dna 32.9 3.5E+02 0.0077 24.0 9.7 31 121-152 282-313 (372)
88 cd06481 ACD_HspB9_like Alpha c 32.5 1.1E+02 0.0024 21.4 4.6 32 106-140 9-40 (87)
89 PRK14278 chaperone protein Dna 32.1 3.7E+02 0.008 24.0 9.4 31 121-152 280-311 (378)
90 PRK00446 cyaY frataxin-like pr 31.9 45 0.00097 24.7 2.5 18 122-139 28-45 (105)
91 TIGR03835 termin_org_DnaJ term 30.7 2.4E+02 0.0052 28.4 7.8 88 42-152 696-793 (871)
92 PRK14297 chaperone protein Dna 29.9 4E+02 0.0087 23.7 8.7 31 121-152 289-319 (380)
93 cd06467 p23_NUDC_like p23_like 29.0 1.8E+02 0.0039 19.4 5.8 30 106-137 10-39 (85)
94 PRK14279 chaperone protein Dna 28.1 4.4E+02 0.0096 23.6 9.2 31 121-152 310-340 (392)
95 CHL00140 rpl6 ribosomal protei 28.0 2E+02 0.0042 23.1 5.8 22 47-75 9-30 (178)
96 PRK14282 chaperone protein Dna 27.9 4.3E+02 0.0093 23.4 9.1 30 121-151 293-323 (369)
97 TIGR03422 mito_frataxin fratax 27.8 44 0.00096 24.5 1.8 16 124-139 30-45 (97)
98 COG0071 IbpA Molecular chapero 27.1 1.5E+02 0.0032 22.6 4.8 33 41-75 100-132 (146)
99 PRK14296 chaperone protein Dna 26.8 4.2E+02 0.0091 23.6 8.3 30 121-151 291-320 (372)
100 cd06494 p23_NUDCD2_like p23-li 24.9 1.5E+02 0.0032 21.3 4.1 29 106-136 17-45 (93)
101 PTZ00037 DnaJ_C chaperone prot 24.6 3.9E+02 0.0085 24.4 7.8 31 121-151 291-323 (421)
102 PRK10266 curved DNA-binding pr 22.4 5E+02 0.011 22.3 8.9 30 121-151 226-255 (306)
103 PRK14280 chaperone protein Dna 22.0 5.7E+02 0.012 22.7 9.5 31 121-152 284-314 (376)
104 PF12992 DUF3876: Domain of un 21.0 3.4E+02 0.0073 19.8 6.0 32 30-62 24-60 (95)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.95 E-value=6.1e-28 Score=188.71 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=86.5
Q ss_pred cCceeeEEEC-CCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847 30 LNINGEWDDA-GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK 108 (172)
Q Consensus 30 ~~p~vDi~Et-~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R 108 (172)
..|++||+|+ +++|+|.|+|| |++|+||+|++ ++++|+|+|++ +.+ .++.+|+++|| ++| + |+|
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v--~~~~LtI~ge~-----~~~--~~~~~~~~~Er-~~g--~--F~R 95 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALA-GFRQEDLDIQL--EGTRLTVKGTP-----EQP--EKEVKWLHQGL-VNQ--P--FSL 95 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEE--ECCEEEEEEEE-----ccc--cCCCcEEEEEE-eCc--E--EEE
Confidence 4589999984 77999999999 99999999999 68899999998 322 24568999999 899 8 999
Q ss_pred EEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeec
Q 039847 109 SFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVL 150 (172)
Q Consensus 109 ~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~ 150 (172)
+|.||++|+. + +|+|+||||+|+|||.+++..+.++|.
T Consensus 96 ~f~LP~~vd~--~--~A~~~nGVL~I~lPK~~~~~~~~rkI~ 133 (142)
T PRK11597 96 SFTLAENMEV--S--GATFVNGLLHIDLIRNEPEAIAPQRIA 133 (142)
T ss_pred EEECCCCccc--C--cCEEcCCEEEEEEeccCccccCCcEEE
Confidence 9999999988 6 799999999999999854444445553
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=1.1e-27 Score=186.24 Aligned_cols=99 Identities=15% Similarity=0.256 Sum_probs=85.3
Q ss_pred ceeeEE-ECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847 32 INGEWD-DAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF 110 (172)
Q Consensus 32 p~vDi~-Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f 110 (172)
|++||+ +++++|+|.|+|| |++|+||+|++ ++++|+|+|++ +.+ .++.+|+++|| ++| + |+|+|
T Consensus 35 p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v--~~~~LtI~ge~-----~~~--~~~~~~~~~Er-~~g--~--F~R~~ 99 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVA-GFAESELEITA--QDNLLVVKGAH-----ADE--QKERTYLYQGI-AER--N--FERKF 99 (137)
T ss_pred CcEEEEEcCCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----Ccc--ccCCcEEEEEE-ECC--E--EEEEE
Confidence 889999 4899999999999 99999999999 57799999998 332 23567999999 899 8 99999
Q ss_pred ECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeee
Q 039847 111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKV 149 (172)
Q Consensus 111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I 149 (172)
.||++|+. + +|+|+||||+|+|||.++++.+.++|
T Consensus 100 ~LP~~Vd~--~--~A~~~dGVL~I~lPK~~~~~~~~r~I 134 (137)
T PRK10743 100 QLAENIHV--R--GANLVNGLLYIDLERVIPEAKKPRRI 134 (137)
T ss_pred ECCCCccc--C--cCEEeCCEEEEEEeCCCccccCCeEE
Confidence 99999988 7 49999999999999985544445555
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=185.42 Aligned_cols=105 Identities=24% Similarity=0.399 Sum_probs=92.9
Q ss_pred cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847 30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS 109 (172)
Q Consensus 30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~ 109 (172)
..|++||+|+++.|+|.++|| ||+|+||+|++ .++.|+|+|++ ..+.+.+...|+++|| .+| + |+|+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~--~~~~l~I~g~~-----~~~~~~~~~~~~~~e~-~~~--~--f~r~ 105 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITV--EGNTLTIRGER-----EEEEEEEEEGYLRRER-AYG--E--FERT 105 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEE--ECCEEEEEEEe-----cccccccCCceEEEEE-Eee--e--EEEE
Confidence 579999999999999999999 99999999999 67899999999 4445556778999999 888 8 9999
Q ss_pred EECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeee
Q 039847 110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKV 149 (172)
Q Consensus 110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I 149 (172)
|.||..++. +.++|+|+||||+|+|||.++++.+.++|
T Consensus 106 ~~Lp~~v~~--~~~~A~~~nGvL~I~lpk~~~~~~~~~~i 143 (146)
T COG0071 106 FRLPEKVDP--EVIKAKYKNGLLTVTLPKAEPEEKKPKRI 143 (146)
T ss_pred EECcccccc--cceeeEeeCcEEEEEEeccccccccCcee
Confidence 999999987 89999999999999999998874444443
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=2.1e-27 Score=171.49 Aligned_cols=92 Identities=36% Similarity=0.599 Sum_probs=82.6
Q ss_pred eeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEEC
Q 039847 33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNL 112 (172)
Q Consensus 33 ~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~L 112 (172)
++||+|++++|+|.++|| ||+|+||+|++ .++++|+|+|++ ..+...++..|+++|| .+| + |+|+|.|
T Consensus 1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v-~~~~~L~I~g~~-----~~~~~~~~~~~~~~e~-~~g--~--f~r~i~L 68 (92)
T cd06472 1 RVDWKETPEAHVFKADVP-GVKKEDVKVEV-EDGRVLRISGER-----KKEEEKKGDDWHRVER-SSG--R--FVRRFRL 68 (92)
T ss_pred CccEEEcCCeEEEEEECC-CCChHhEEEEE-eCCCEEEEEEEe-----cccccccCCCEEEEEE-ecc--E--EEEEEEC
Confidence 589999999999999999 99999999999 345699999998 3333445678999999 888 8 9999999
Q ss_pred CCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847 113 PEGVIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 113 P~~vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
|.+++. ++|+|+|+||||+|++||
T Consensus 69 P~~v~~--~~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 69 PENADA--DEVKAFLENGVLTVTVPK 92 (92)
T ss_pred CCCCCH--HHCEEEEECCEEEEEecC
Confidence 999988 999999999999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=1.1e-25 Score=162.34 Aligned_cols=93 Identities=29% Similarity=0.462 Sum_probs=80.8
Q ss_pred ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847 32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN 111 (172)
Q Consensus 32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~ 111 (172)
|++||+|++++|+|.++|| |++++||+|++ +++.|+|+|+++.. .+....+..|+++|| .+| + |.|+|.
T Consensus 1 ~~~di~e~~~~~~i~~~lP-Gv~~edi~v~~--~~~~L~I~g~~~~~---~~~~~~~~~~~~~e~-~~g--~--f~r~~~ 69 (93)
T cd06471 1 MKTDIKETDDEYIVEADLP-GFKKEDIKLDY--KDGYLTISAKRDES---KDEKDKKGNYIRRER-YYG--S--FSRSFY 69 (93)
T ss_pred CceeEEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEEccc---cccccccCCEEEEee-ecc--E--EEEEEE
Confidence 4799999999999999999 99999999999 67899999999321 112223457999999 888 8 999999
Q ss_pred CCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847 112 LPEGVIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
|| +++. ++|+|+|+||+|+|++||
T Consensus 70 lp-~v~~--~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 70 LP-NVDE--EEIKAKYENGVLKITLPK 93 (93)
T ss_pred CC-CCCH--HHCEEEEECCEEEEEEcC
Confidence 99 6877 999999999999999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=8.2e-25 Score=157.94 Aligned_cols=89 Identities=21% Similarity=0.350 Sum_probs=78.8
Q ss_pred ceeeEEECC-CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847 32 INGEWDDAG-DNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF 110 (172)
Q Consensus 32 p~vDi~Et~-d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f 110 (172)
|++|++|++ ++|+|.++|| |++|+||+|++ +++.|+|+|++ +.+.. ++.+|+++|| .+| + |.|+|
T Consensus 1 p~~di~e~~~~~~~v~~~lP-G~~kedi~v~~--~~~~L~I~g~~-----~~~~~-~~~~~~~~e~-~~g--~--f~R~~ 66 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVA-GFSEDDLEIEV--ENNQLTVTGKK-----ADEEN-EEREYLHRGI-AKR--A--FERSF 66 (90)
T ss_pred CCeeeEEcCCCeEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ccccc-CCCcEEEEEE-ece--E--EEEEE
Confidence 679999985 9999999999 99999999999 67899999999 33332 5668999999 888 8 99999
Q ss_pred ECCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847 111 NLPEGVIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
.||.+++. ++|+|+||+|+|+||+
T Consensus 67 ~LP~~vd~----~~A~~~~GvL~I~l~~ 90 (90)
T cd06470 67 NLADHVKV----KGAELENGLLTIDLER 90 (90)
T ss_pred ECCCCceE----CeeEEeCCEEEEEEEC
Confidence 99998876 4999999999999985
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.91 E-value=1.1e-23 Score=153.22 Aligned_cols=99 Identities=28% Similarity=0.397 Sum_probs=79.6
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
||.|+++.|.|.++|| ||.++||+|++ +++.|+|+|++ . ....+..|++.|+ ++| . |.|+|.||+
T Consensus 1 di~e~~~~~~i~~~lp-G~~~edi~I~~--~~~~L~I~g~~-----~--~~~~~~~~~~~~~-~~~--~--f~r~~~lP~ 65 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLP-GFDKEDIKIKV--DDNKLVISGKR-----K--EEEEDDRYYRSER-RYG--S--FERSIRLPE 65 (102)
T ss_dssp EEEESSSEEEEEEE-T-TS-GGGEEEEE--ETTEEEEEEEE-----E--GEECTTCEEEE-S--SE--E--EEEEEE-ST
T ss_pred CeEECCCEEEEEEECC-CCChHHEEEEE--ecCccceecee-----e--eeeeeeeeeeccc-ccc--e--EEEEEcCCC
Confidence 8999999999999999 99999999999 67789999999 3 3345567888888 777 7 999999999
Q ss_pred CCcCCCCcEEEEEeCCEEEEEEeccCCCCc-ceeeec
Q 039847 115 GVIVKPNCFKASVEDGVLNVIFTKLKSKKK-IMSKVL 150 (172)
Q Consensus 115 ~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~-~~~~I~ 150 (172)
+++. ++|+|+|+||+|+|++||....+. ..++|+
T Consensus 66 ~vd~--~~i~a~~~~GvL~I~~pk~~~~~~~~~~~I~ 100 (102)
T PF00011_consen 66 DVDP--DKIKASYENGVLTITIPKKEEEEDSQPKRIP 100 (102)
T ss_dssp TB-G--GG-EEEETTSEEEEEEEBSSSCTTSSSCEE-
T ss_pred cCCc--ceEEEEecCCEEEEEEEccccccCCCCeEEE
Confidence 9988 999999999999999999987643 555553
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=1.3e-22 Score=145.98 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=70.5
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
++++++++|.|.++|| ||+++||+|++ .++.|+|+|++ .... ++..|+++ . |+|+|.||+
T Consensus 4 ~v~e~~~~~~v~~dlp-G~~~edi~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~~--------e--f~R~~~LP~ 63 (86)
T cd06497 4 EVRSDRDKFTIYLDVK-HFSPEDLTVKV--LDDYVEIHGKH-----SERQ--DDHGYISR--------E--FHRRYRLPS 63 (86)
T ss_pred eEEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ccee--CCCCEEEE--------E--EEEEEECCC
Confidence 7899999999999999 99999999999 67899999997 2222 22345432 4 999999999
Q ss_pred CCcCCCCcEEEEE-eCCEEEEEEec
Q 039847 115 GVIVKPNCFKASV-EDGVLNVIFTK 138 (172)
Q Consensus 115 ~vd~~~d~I~A~~-~nGVL~V~vPK 138 (172)
+|+. ++|+|+| +||||+|++||
T Consensus 64 ~Vd~--~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 64 NVDQ--SAITCSLSADGMLTFSGPK 86 (86)
T ss_pred CCCh--HHeEEEeCCCCEEEEEecC
Confidence 9988 9999999 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=4.2e-22 Score=142.24 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=69.3
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
++.+++++|.|.++|| ||+++||+|++ .++.|+|+|++ ..+. ++..|++ | . |+|+|.||.
T Consensus 1 ~~~~~~~~~~v~~dlp-G~~~edI~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~--~------e--f~R~~~LP~ 60 (83)
T cd06478 1 EVRLDKDRFSVNLDVK-HFSPEELSVKV--LGDFVEIHGKH-----EERQ--DEHGFIS--R------E--FHRRYRLPP 60 (83)
T ss_pred CeeecCceEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ceEc--CCCCEEE--E------E--EEEEEECCC
Confidence 3678999999999999 99999999999 67899999998 2211 1234543 2 4 999999999
Q ss_pred CCcCCCCcEEEEE-eCCEEEEEEec
Q 039847 115 GVIVKPNCFKASV-EDGVLNVIFTK 138 (172)
Q Consensus 115 ~vd~~~d~I~A~~-~nGVL~V~vPK 138 (172)
+|+. ++|+|+| +||||+|++||
T Consensus 61 ~vd~--~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 61 GVDP--AAITSSLSADGVLTISGPR 83 (83)
T ss_pred CcCh--HHeEEEECCCCEEEEEecC
Confidence 9988 9999999 79999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.87 E-value=7.1e-22 Score=141.62 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=69.3
Q ss_pred EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847 36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG 115 (172)
Q Consensus 36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~ 115 (172)
+.+++++|.|.++|| ||+++||+|++ .++.|+|+|++ ..+. ++..|++ | . |+|+|.||.+
T Consensus 2 ~~~~~~~~~v~~dlp-G~~~edi~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~--~------e--F~R~~~LP~~ 61 (84)
T cd06498 2 MRLEKDKFSVNLDVK-HFSPEELKVKV--LGDFIEIHGKH-----EERQ--DEHGFIS--R------E--FQRKYRIPAD 61 (84)
T ss_pred eEeCCceEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ccee--CCCCEEE--E------E--EEEEEECCCC
Confidence 567899999999999 99999999999 67899999998 2222 2234542 2 5 9999999999
Q ss_pred CcCCCCcEEEEEe-CCEEEEEEecc
Q 039847 116 VIVKPNCFKASVE-DGVLNVIFTKL 139 (172)
Q Consensus 116 vd~~~d~I~A~~~-nGVL~V~vPK~ 139 (172)
|+. ++|+|+|. ||||+|++||+
T Consensus 62 vd~--~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 62 VDP--LTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CCh--HHcEEEeCCCCEEEEEEeCC
Confidence 988 99999995 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.87 E-value=3.9e-22 Score=142.43 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=69.4
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
|+.|++++|.|.++|| ||+||||+|++ +++.|+|+|++ +.+. + + .+| + |+|+|.||.
T Consensus 2 ~v~e~~~~~~v~~dlp-G~~pedi~V~v--~~~~L~I~ger-----~~~~---~-------~-~~g--~--F~R~~~LP~ 58 (81)
T cd06479 2 NVKTLGDTYQFAVDVS-DFSPEDIIVTT--SNNQIEVHAEK-----LASD---G-------T-VMN--T--FTHKCQLPE 58 (81)
T ss_pred CccCcCCeEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----eccC---C-------C-EEE--E--EEEEEECCC
Confidence 7899999999999999 99999999999 67899999998 2221 1 1 346 7 999999999
Q ss_pred CCcCCCCcEEEEE-eCCEEEEEEec
Q 039847 115 GVIVKPNCFKASV-EDGVLNVIFTK 138 (172)
Q Consensus 115 ~vd~~~d~I~A~~-~nGVL~V~vPK 138 (172)
+|+. ++|+|+| +||||+|++++
T Consensus 59 ~vd~--e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 59 DVDP--TSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CcCH--HHeEEEecCCCEEEEEecC
Confidence 9988 9999997 99999999986
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.8e-21 Score=140.07 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=69.7
Q ss_pred eeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847 34 GEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP 113 (172)
Q Consensus 34 vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP 113 (172)
-||+|++++|.|.++|| ||+|++|+|++ +++.|+|+|++ ..++ + ...++ +| + |+|+|.||
T Consensus 3 ~~i~e~~~~~~v~~dlP-G~~~edi~V~v--~~~~L~I~g~~-----~~~~-~-~~~~~--~~------~--f~R~f~LP 62 (86)
T cd06475 3 SEIRQTADRWKVSLDVN-HFAPEELVVKT--KDGVVEITGKH-----EEKQ-D-EHGFV--SR------C--FTRKYTLP 62 (86)
T ss_pred ceEEEcCCeEEEEEECC-CCCHHHEEEEE--ECCEEEEEEEE-----CcCc-C-CCCEE--EE------E--EEEEEECC
Confidence 58999999999999999 99999999999 67899999998 2221 1 12232 22 5 99999999
Q ss_pred CCCcCCCCcEEEEEe-CCEEEEEEe
Q 039847 114 EGVIVKPNCFKASVE-DGVLNVIFT 137 (172)
Q Consensus 114 ~~vd~~~d~I~A~~~-nGVL~V~vP 137 (172)
++|+. ++|+|+|. ||||+|++|
T Consensus 63 ~~vd~--~~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 63 PGVDP--TAVTSSLSPDGILTVEAP 85 (86)
T ss_pred CCCCH--HHcEEEECCCCeEEEEec
Confidence 99988 99999997 999999998
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.86 E-value=2.3e-21 Score=139.71 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=70.0
Q ss_pred ECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCc
Q 039847 38 DAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVI 117 (172)
Q Consensus 38 Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd 117 (172)
+..+.|.|.++|| ||+++||+|++ +++.|+|+|++ +.+.+.+...|++ .+| + |+|+|.||++|+
T Consensus 4 ~~~d~~~v~~dlp-G~~~edI~V~v--~~~~L~I~g~~-----~~~~~~~~~~~~~----~~~--~--F~R~~~LP~~Vd 67 (87)
T cd06481 4 DGKEGFSLKLDVR-GFSPEDLSVRV--DGRKLVVTGKR-----EKKNEDEKGSFSY----EYQ--E--FVREAQLPEHVD 67 (87)
T ss_pred CccceEEEEEECC-CCChHHeEEEE--ECCEEEEEEEE-----eeecccCCCcEEE----Eee--E--EEEEEECCCCcC
Confidence 4568999999999 99999999999 68899999998 3333333345543 456 7 999999999998
Q ss_pred CCCCcEEEEE-eCCEEEEEEec
Q 039847 118 VKPNCFKASV-EDGVLNVIFTK 138 (172)
Q Consensus 118 ~~~d~I~A~~-~nGVL~V~vPK 138 (172)
. ++|+|+| +||||+|++|+
T Consensus 68 ~--~~i~A~~~~dGvL~I~~P~ 87 (87)
T cd06481 68 P--EAVTCSLSPSGHLHIRAPR 87 (87)
T ss_pred h--HHeEEEeCCCceEEEEcCC
Confidence 8 9999999 99999999995
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.85 E-value=1e-20 Score=135.43 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=66.6
Q ss_pred EECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCC
Q 039847 37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGV 116 (172)
Q Consensus 37 ~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~v 116 (172)
..++++|.|.++|| ||+++||+|++ .++.|+|+|++ .... ....|++ + . |+|+|.||++|
T Consensus 3 ~~~~d~y~v~~dlp-G~~~edi~V~v--~~~~L~I~g~~-----~~~~--~~~~~~~------~--e--F~R~~~LP~~v 62 (83)
T cd06476 3 ESEDDKYQVFLDVC-HFTPDEITVRT--VDNLLEVSARH-----PQRM--DRHGFVS------R--E--FTRTYILPMDV 62 (83)
T ss_pred eccCCeEEEEEEcC-CCCHHHeEEEE--ECCEEEEEEEE-----ccee--cCCCEEE------E--E--EEEEEECCCCC
Confidence 45689999999999 99999999999 67899999998 2221 1222332 3 5 99999999999
Q ss_pred cCCCCcEEEEEe-CCEEEEEEec
Q 039847 117 IVKPNCFKASVE-DGVLNVIFTK 138 (172)
Q Consensus 117 d~~~d~I~A~~~-nGVL~V~vPK 138 (172)
+. ++|+|+|. ||||+|++||
T Consensus 63 d~--~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 63 DP--LLVRASLSHDGILCIQAPR 83 (83)
T ss_pred Ch--hhEEEEecCCCEEEEEecC
Confidence 88 99999995 9999999997
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=1.9e-20 Score=130.92 Aligned_cols=88 Identities=35% Similarity=0.531 Sum_probs=76.4
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
|+.|++++|++.++|| |+++++|+|++ +++.|.|+|++. ...... ..+...|+ .+| . |.|+|.||.
T Consensus 1 ~i~e~~~~~~i~~~lp-g~~~~~i~V~v--~~~~l~I~g~~~-----~~~~~~-~~~~~~~~-~~~--~--f~r~~~LP~ 66 (88)
T cd06464 1 DVYETDDAYVVEADLP-GFKKEDIKVEV--EDGVLTISGERE-----EEEEEE-ENYLRRER-SYG--S--FSRSFRLPE 66 (88)
T ss_pred CcEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEEe-----cccccC-CcEEEEEE-eCc--E--EEEEEECCC
Confidence 5789999999999999 99999999999 678999999993 222222 26777787 777 8 999999999
Q ss_pred CCcCCCCcEEEEEeCCEEEEEEec
Q 039847 115 GVIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 115 ~vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
+++. +.++|+|+||+|+|++||
T Consensus 67 ~vd~--~~i~a~~~~G~L~I~~pk 88 (88)
T cd06464 67 DVDP--DKIKASLENGVLTITLPK 88 (88)
T ss_pred CcCH--HHcEEEEeCCEEEEEEcC
Confidence 9988 999999999999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.84 E-value=8.2e-21 Score=137.34 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=67.8
Q ss_pred CCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcC
Q 039847 39 AGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIV 118 (172)
Q Consensus 39 t~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~ 118 (172)
.+++|+|.|+|| ||+|+||+|++ .++.|+|+|++ +.+++..+ ..|| ++| + |.|+|.||.+|+.
T Consensus 6 ~~~~~~v~adlP-G~~kedI~V~v--~~~~L~I~ger-----~~~~e~~~----~~er-~~g--~--F~R~f~LP~~Vd~ 68 (87)
T cd06482 6 DSSNVLASVDVC-GFEPDQVKVKV--KDGKVQVSAER-----ENRYDCLG----SKKY-SYM--N--ICKEFSLPPGVDE 68 (87)
T ss_pred cCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEE-----ecccccCC----ccEE-EEE--E--EEEEEECCCCcCh
Confidence 468999999999 99999999999 67899999999 33222211 2477 788 8 9999999999988
Q ss_pred CCCcEEEEEeCC-EEEEEEe
Q 039847 119 KPNCFKASVEDG-VLNVIFT 137 (172)
Q Consensus 119 ~~d~I~A~~~nG-VL~V~vP 137 (172)
++|+|+|+|| ||+|.-|
T Consensus 69 --d~i~A~~~~~~~l~i~~~ 86 (87)
T cd06482 69 --KDVTYSYGLGSVVKIETP 86 (87)
T ss_pred --HHcEEEEcCCCEEEEeeC
Confidence 9999999887 9999877
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=3.9e-20 Score=132.70 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=66.2
Q ss_pred EECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCC
Q 039847 37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGV 116 (172)
Q Consensus 37 ~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~v 116 (172)
.|+++.|.|.++|| ||+||||+|++ .++.|+|+|++ ..+.+ ...++ +| + |+|+|.||.+|
T Consensus 3 ~e~~~~~~v~~dlp-G~~~edI~V~v--~~~~L~I~ge~-----~~~~~--~~~~~--~r------~--F~R~~~LP~~V 62 (83)
T cd06477 3 EEGKPMFQILLDVV-QFRPEDIIIQV--FEGWLLIKGQH-----GVRMD--EHGFI--SR------S--FTRQYQLPDGV 62 (83)
T ss_pred ccCCceEEEEEEcC-CCCHHHeEEEE--ECCEEEEEEEE-----ccccC--CCCEE--EE------E--EEEEEECCCCc
Confidence 47889999999999 99999999999 78899999998 33221 22332 23 5 99999999999
Q ss_pred cCCCCcEEEEE-eCCEEEEEEe
Q 039847 117 IVKPNCFKASV-EDGVLNVIFT 137 (172)
Q Consensus 117 d~~~d~I~A~~-~nGVL~V~vP 137 (172)
+. ++|+|+| +||||+|+.|
T Consensus 63 d~--~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 63 EH--KDLSAMLCHDGILVVETK 82 (83)
T ss_pred ch--heEEEEEcCCCEEEEEec
Confidence 88 9999998 8999999875
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=3.3e-20 Score=131.66 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcCC
Q 039847 40 GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVK 119 (172)
Q Consensus 40 ~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~~ 119 (172)
++.|.|.++|| ||+++||+|++ +++.|+|+|++ +.... ...| .+| + |.|+|.||.+|+.
T Consensus 6 ~~~~~v~~dlp-G~~~edI~v~v--~~~~L~I~g~~-----~~~~~--~~~~------~~~--~--f~r~~~LP~~vd~- 64 (83)
T cd06526 6 DEKFQVTLDVK-GFKPEELKVKV--SDNKLVVEGKH-----EERED--EHGY------VSR--E--FTRRYQLPEGVDP- 64 (83)
T ss_pred CeeEEEEEECC-CCCHHHcEEEE--ECCEEEEEEEE-----eeecc--CCCE------EEE--E--EEEEEECCCCCCh-
Confidence 36999999999 99999999999 67899999998 22211 1122 334 6 9999999999988
Q ss_pred CCcEEEEEeC-CEEEEEEec
Q 039847 120 PNCFKASVED-GVLNVIFTK 138 (172)
Q Consensus 120 ~d~I~A~~~n-GVL~V~vPK 138 (172)
++++|+|.| |+|+|++||
T Consensus 65 -~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 65 -DSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred -HHeEEEeCCCcEEEEEecC
Confidence 999999998 999999998
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.6e-20 Score=150.78 Aligned_cols=108 Identities=34% Similarity=0.493 Sum_probs=94.5
Q ss_pred cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcc--cccccEEEEeeeecCCCeeeEE
Q 039847 30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEH--EAAVMWVLKECCSSGDGKIDIS 107 (172)
Q Consensus 30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~--~~~~~~~~~Er~~~G~~~~~F~ 107 (172)
+.++.++.|+.+.|++.++|| |+++++++|++ +++++|+|+|++ ..+.+ .....|+..|| ..| . |.
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~P-gl~ke~iKv~~-~~~~~l~isGe~-----~~e~e~~~~~~~~~~~E~-~~g--~--F~ 150 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLP-GLKKEDIKVEV-EDEKVLTISGER-----KKEEEESGSGKKWKRVER-KLG--K--FK 150 (196)
T ss_pred ccCCcccccCCCceEEEeeCC-CCCchhceEEe-ccCcEEEEeccc-----ccccccccCCccceeehh-ccc--c--eE
Confidence 456778899999999999999 99999999999 566699999999 33333 35678999999 888 8 99
Q ss_pred EEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCC--CCcceeeece
Q 039847 108 KSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS--KKKIMSKVLG 151 (172)
Q Consensus 108 R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~--~k~~~~~I~~ 151 (172)
|+|.||++++. +.|+|.|+||||+|+|||... +++.++.|..
T Consensus 151 r~~~lPenv~~--d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 151 RRFELPENVDV--DEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred eeecCCccccH--HHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence 99999999988 999999999999999999988 6788877754
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.66 E-value=8.9e-16 Score=111.99 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=66.5
Q ss_pred EECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCC
Q 039847 37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGV 116 (172)
Q Consensus 37 ~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~v 116 (172)
.++++.|.|.+++. ||++|||+|.+ .++.|+|+|++ ...+ ++. .++. | + |.|+|.||++|
T Consensus 11 ~~~~~~f~v~ldv~-gF~pEDL~Vkv--~~~~L~V~Gkh-----~~~~-~e~-g~~~--r------~--F~R~~~LP~~V 70 (91)
T cd06480 11 PNSSEPWKVCVNVH-SFKPEELTVKT--KDGFVEVSGKH-----EEQQ-KEG-GIVS--K------N--FTKKIQLPPEV 70 (91)
T ss_pred CCCCCcEEEEEEeC-CCCHHHcEEEE--ECCEEEEEEEE-----Cccc-CCC-CEEE--E------E--EEEEEECCCCC
Confidence 45778999999999 99999999999 67899999998 3222 222 2321 3 6 99999999999
Q ss_pred cCCCCcEEEEEe-CCEEEEEEec
Q 039847 117 IVKPNCFKASVE-DGVLNVIFTK 138 (172)
Q Consensus 117 d~~~d~I~A~~~-nGVL~V~vPK 138 (172)
+. +.|+|+|. ||+|+|.+|.
T Consensus 71 d~--~~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 71 DP--VTVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred Cc--hhEEEEeCCCCeEEEEcCC
Confidence 88 99999997 9999999983
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.53 E-value=9.1e-14 Score=93.10 Aligned_cols=80 Identities=38% Similarity=0.620 Sum_probs=67.5
Q ss_pred EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847 36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG 115 (172)
Q Consensus 36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~ 115 (172)
|.++++.|.|.++|| |+.+++++|.+ +++.|.|+|.+.. ... .++ ..+ . |.+.|.||..
T Consensus 1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~--~~~~l~v~~~~~~-----~~~--------~~~-~~~--~--~~~~~~L~~~ 59 (80)
T cd00298 1 WYQTDDEVVVTVDLP-GVKKEDIKVEV--EDNVLTISGKREE-----EEE--------RER-SYG--E--FERSFELPED 59 (80)
T ss_pred CEEcCCEEEEEEECC-CCCHHHeEEEE--ECCEEEEEEEEcC-----CCc--------ceE-eee--e--EEEEEECCCC
Confidence 678899999999999 99999999999 5689999999822 111 112 223 5 9999999999
Q ss_pred CcCCCCcEEEEEeCCEEEEEEec
Q 039847 116 VIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 116 vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
++. ++++|+|.+|+|+|++||
T Consensus 60 i~~--~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 60 VDP--EKSKASLENGVLEITLPK 80 (80)
T ss_pred cCH--HHCEEEEECCEEEEEEcC
Confidence 987 999999999999999997
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.6e-13 Score=108.58 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=78.2
Q ss_pred ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847 32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN 111 (172)
Q Consensus 32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~ 111 (172)
...++..+.+.|.|.+|+- .|++|+|.|.+ .|+.|.|.|++ .+.++ +.. +..| + |.|+|.
T Consensus 63 ~~~~~~~~~~~F~V~lDV~-~F~PeEl~Vk~--~~~~l~V~gkH------eer~d-~~G--~v~R------~--F~R~y~ 122 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVH-QFKPEELKVKT--DDNTLEVEGKH------EEKED-EHG--YVSR------S--FVRKYL 122 (173)
T ss_pred cccccccCCCcEEEEEEcc-cCcccceEEEe--CCCEEEEEeee------ccccC-CCC--eEEE------E--EEEEec
Confidence 4578899999999999999 99999999999 78899999998 12222 222 2334 5 999999
Q ss_pred CCCCCcCCCCcEEEEE-eCCEEEEEEeccCCCCcceeee
Q 039847 112 LPEGVIVKPNCFKASV-EDGVLNVIFTKLKSKKKIMSKV 149 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~-~nGVL~V~vPK~~~~k~~~~~I 149 (172)
||++++. +.|++.+ .+|+|+|+.||.+.....-+.|
T Consensus 123 LP~~vdp--~~V~S~LS~dGvLtI~ap~~~~~~~~er~i 159 (173)
T KOG3591|consen 123 LPEDVDP--TSVTSTLSSDGVLTIEAPKPPPKQDNERSI 159 (173)
T ss_pred CCCCCCh--hheEEeeCCCceEEEEccCCCCcCccceEE
Confidence 9999977 9999999 8899999999998765433444
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.32 E-value=1.3e-11 Score=85.48 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=63.0
Q ss_pred EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847 36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG 115 (172)
Q Consensus 36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~ 115 (172)
|+++++.+.|.+++| |+++++++|++ .++.|+|+| . . |.+.+.||..
T Consensus 1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~--~~~~l~i~~-~---------------------------~--~~~~~~l~~~ 47 (78)
T cd06469 1 WSQTDEDVKISVPLK-GVKTSKVDIFC--SDLYLKVNF-P---------------------------P--YLFELDLAAP 47 (78)
T ss_pred CcccCCEEEEEEEeC-CCccccceEEE--ecCEEEEcC-C---------------------------C--EEEEEeCccc
Confidence 678999999999999 99999999999 567788765 1 3 7788999999
Q ss_pred CcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 116 VIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 116 vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
|+. ++.+|++.+|.|.|+|||.++
T Consensus 48 I~~--e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 48 IDD--EKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred ccc--cccEEEEeCCEEEEEEEeCCC
Confidence 977 999999999999999999864
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.14 E-value=5.6e-10 Score=90.25 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=64.0
Q ss_pred cCceeeEEECCC-eEEEEEecCCCCCCCc-eEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEE
Q 039847 30 LNINGEWDDAGD-NLMFKATLPTGTKMEE-LKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDIS 107 (172)
Q Consensus 30 ~~p~vDi~Et~d-~~vv~adLP~Gv~ked-I~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~ 107 (172)
..+.+++.+.++ .++|.|+|| |+++++ |+|.+..+...|+|+... . |.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~~~~---------------------------~--~~ 139 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIRVGE---------------------------K--YL 139 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEecCC---------------------------c--eE
Confidence 357799999888 699999999 999999 999994445666664322 3 66
Q ss_pred EEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCC
Q 039847 108 KSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSK 142 (172)
Q Consensus 108 R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~ 142 (172)
+.+.||.. .. +.++|+|+||||+|+|-+.++.
T Consensus 140 krv~L~~~-~~--e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 140 KRVALPWP-DP--EITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred eeEecCCC-cc--ceeeEEEeCceEEEEEeecCCC
Confidence 78999965 45 8899999999999999887654
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.99 E-value=5.6e-09 Score=71.50 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=65.6
Q ss_pred EEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCC
Q 039847 36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEG 115 (172)
Q Consensus 36 i~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~ 115 (172)
|.++++.+.|.+.+| |..+++++|.+ .++.|+|++.. . + .+ . |...+.|+..
T Consensus 1 W~Q~~~~v~i~v~~~-~~~~~~~~v~~--~~~~l~i~~~~-----~------~----------~~--~--~~~~~~L~~~ 52 (84)
T cd06463 1 WYQTLDEVTITIPLK-DVTKKDVKVEF--TPKSLTVSVKG-----G------G----------GK--E--YLLEGELFGP 52 (84)
T ss_pred CcccccEEEEEEEcC-CCCccceEEEE--ecCEEEEEeeC-----C------C----------CC--c--eEEeeEccCc
Confidence 578899999999999 99999999999 56789999876 1 0 11 4 7788899999
Q ss_pred CcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 116 VIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 116 vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
++. ++.++++.+|.|.|+|+|+++
T Consensus 53 I~~--~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 53 IDP--EESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred cch--hhcEEEEeCCEEEEEEEECCC
Confidence 977 999999999999999999865
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.74 E-value=7.6e-08 Score=67.08 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=65.9
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
||+++++.+.|.+.+| |+.+++++|.+ .++.|.|++.. . + .+ . |...+.|..
T Consensus 1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~--~~~~l~i~~~~-----~------~----------~~--~--~~~~~~L~~ 52 (84)
T cd06466 1 DWYQTDTSVTVTIYAK-NVDKEDVKVEF--NEQSLSVSIIL-----P------G----------GS--E--YQLELDLFG 52 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEE--ecCEEEEEEEC-----C------C----------CC--e--EEEeccccc
Confidence 7999999999999999 99999999999 56789998765 1 0 01 3 677888999
Q ss_pred CCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 115 GVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 115 ~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
.|+. +..++++.+|.|.|+|.|.+.
T Consensus 53 ~I~~--~~s~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 53 PIDP--EQSKVSVLPTKVEITLKKAEP 77 (84)
T ss_pred ccCc--hhcEEEEeCeEEEEEEEcCCC
Confidence 9976 999999999999999999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.33 E-value=1.9e-05 Score=53.51 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred ceeeEEECCCeEEEEEecCCC--CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847 32 INGEWDDAGDNLMFKATLPTG--TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS 109 (172)
Q Consensus 32 p~vDi~Et~d~~vv~adLP~G--v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~ 109 (172)
|+++|.++++...|.+.++ + +++++++|.+ ..+.|.++... ..+ .. |.-.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~-~~~~~~~dv~v~~--~~~~l~v~~~~-----~~~------------------~~--~~~~ 52 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVK-PVDISKEDVKVDF--TDTSLSVSIKS-----GDG------------------KE--YLLE 52 (79)
T ss_dssp SSEEEEEESSEEEEEEE-T-TTTSSGGGEEEEE--ETTEEEEEEEE-----TTS------------------CE--EEEE
T ss_pred CCeEEEECCCEEEEEEEEc-CCCCChHHeEEEE--EeeEEEEEEEc-----cCC------------------ce--EEEE
Confidence 5799999999999999995 4 4599999999 56788888664 100 03 6667
Q ss_pred EECCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847 110 FNLPEGVIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
+.|...|+. +..+.++.++.|.|+|.|
T Consensus 53 ~~L~~~I~~--~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 53 GELFGEIDP--DESTWKVKDNKIEITLKK 79 (79)
T ss_dssp EEBSS-BEC--CCEEEEEETTEEEEEEEB
T ss_pred EEEeeeEcc--hhcEEEEECCEEEEEEEC
Confidence 779999977 999999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.04 E-value=8.7e-05 Score=54.68 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=64.2
Q ss_pred ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847 32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN 111 (172)
Q Consensus 32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~ 111 (172)
|+++|+++.+...|.+.+| |+ ++++|.+ ..+.|.|++.. .. .+ + . |.-.+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~-~~--~~~~V~~--~~~~l~v~~~~-----~~----~~-~------------~--y~~~~~ 51 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELP-DA--KDPKIKL--EPTSLSFKAKG-----GG----GG-K------------K--YEFDLE 51 (108)
T ss_pred CceeeeECCCEEEEEEEeC-CC--CCcEEEE--ECCEEEEEEEc-----CC----CC-e------------e--EEEEeE
Confidence 5799999999999999999 98 8899999 56789998854 00 01 0 2 556778
Q ss_pred CCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847 112 LPEGVIVKPNCFKASVEDGVLNVIFTKLK 140 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~nGVL~V~vPK~~ 140 (172)
|...|+. +..+.++.++-|.|+|.|.+
T Consensus 52 L~~~I~p--e~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 52 FYKEIDP--EESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred hhhhccc--cccEEEecCCeEEEEEEECC
Confidence 9988877 99999999999999999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.73 E-value=0.00037 Score=48.91 Aligned_cols=77 Identities=13% Similarity=0.251 Sum_probs=61.9
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
||+++++...|.+.++ |+.++++.|++ ..+.|.+++... . +. . |.-.+.|..
T Consensus 1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~--~~~~l~~~~~~~-----~-----~~-------------~--y~~~~~L~~ 52 (84)
T cd06489 1 DWYQTESQVVITILIK-NVKPEDVSVEF--EKRELSATVKLP-----S-----GN-------------D--YSLKLHLLH 52 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEE--eCCEEEEEEECC-----C-----CC-------------c--EEEeeecCc
Confidence 7999999999999999 99999999999 567899987651 0 00 1 444667888
Q ss_pred CCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 115 GVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 115 ~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
.++. ++.+.+...+-+.|+|.|.+.
T Consensus 53 ~I~p--~~s~~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 53 PIVP--EQSSYKILSTKIEIKLKKTEA 77 (84)
T ss_pred eecc--hhcEEEEeCcEEEEEEEcCCC
Confidence 8866 888888889999999999853
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.72 E-value=0.00022 Score=61.23 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=54.5
Q ss_pred CCeEEEEEecCCCC-CCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcC
Q 039847 40 GDNLMFKATLPTGT-KMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIV 118 (172)
Q Consensus 40 ~d~~vv~adLP~Gv-~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~ 118 (172)
.+.++|+++|| |+ +..+|+++| ..+.|.|.... . . |.-.+.||..|+.
T Consensus 260 p~~lvv~i~LP-~~~s~~~i~LdV--~~~~l~l~~~~------------------------~--~--y~L~l~LP~~V~~ 308 (328)
T PF08190_consen 260 PEELVVEIELP-GVESASDIDLDV--SEDRLSLSSPK------------------------P--K--YRLDLPLPYPVDE 308 (328)
T ss_pred CceEEEEEECC-CcCccceeEEEE--eCCEEEEEeCC------------------------C--c--eEEEccCCCcccC
Confidence 58899999999 99 899999999 56678887554 0 1 5567999999988
Q ss_pred CCCcEEEEE--eCCEEEEEEe
Q 039847 119 KPNCFKASV--EDGVLNVIFT 137 (172)
Q Consensus 119 ~~d~I~A~~--~nGVL~V~vP 137 (172)
+..+|+| +.++|+|+||
T Consensus 309 --~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 309 --DNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred --CCceEEEccCCCEEEEEEE
Confidence 9999999 4599999998
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.52 E-value=0.0011 Score=46.09 Aligned_cols=75 Identities=27% Similarity=0.329 Sum_probs=58.3
Q ss_pred eEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCC
Q 039847 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPE 114 (172)
Q Consensus 35 Di~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~ 114 (172)
+|.++++...|.+.+|.|+.++|+++++ ..+.|+|+... ..++ ..| .|..
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~--~~~~l~v~~~~-------------~~~~-----l~~----------~L~~ 51 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEI--TPKHLKVGVKG-------------GEPL-----LDG----------ELYA 51 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEE--EcCEEEEEECC-------------CCce-----EcC----------cccC
Confidence 6899999999999998678999999999 45778887542 0111 112 3666
Q ss_pred CCcCCCCcEEEEEeC-CEEEEEEeccCC
Q 039847 115 GVIVKPNCFKASVED-GVLNVIFTKLKS 141 (172)
Q Consensus 115 ~vd~~~d~I~A~~~n-GVL~V~vPK~~~ 141 (172)
.|+. +...-++.+ ..|.|+|+|.++
T Consensus 52 ~I~~--~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 52 KVKV--DESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred ceeE--cCCEEEEeCCCEEEEEEEECCC
Confidence 7766 888888999 999999999865
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.49 E-value=0.0024 Score=45.41 Aligned_cols=79 Identities=11% Similarity=0.189 Sum_probs=64.5
Q ss_pred eeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEEC
Q 039847 33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNL 112 (172)
Q Consensus 33 ~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~L 112 (172)
+.||+++++...|.+.+. |+.++++.+.+ +.+.|+++... .. + . . |.-.+.|
T Consensus 2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~--~~~~l~v~~~~-----~~-----~-~------------~--y~~~l~L 53 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEA--NSTVLTIHIVF-----EG-----N-K------------E--FQLDIEL 53 (87)
T ss_pred CccEeeCCCEEEEEEEEC-cCCccceEEEe--cCCEEEEEEEC-----CC-----C-c------------e--EEEEeec
Confidence 579999999999999999 99999999999 56788887654 10 0 0 2 5566788
Q ss_pred CCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 113 PEGVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 113 P~~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
-..|+. +..+-+...+-+.|+|.|+++
T Consensus 54 ~~~I~~--~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 54 WGVIDV--EKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred cceECh--hHcEEEecCcEEEEEEEeCCC
Confidence 888866 888888899999999999864
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.44 E-value=0.0035 Score=44.40 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=61.9
Q ss_pred eeeEEECCCeEEEEEecCCCCCC---CceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847 33 NGEWDDAGDNLMFKATLPTGTKM---EELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS 109 (172)
Q Consensus 33 ~vDi~Et~d~~vv~adLP~Gv~k---edI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~ 109 (172)
+.+|+++++...|.+.+| +..+ ++++|++ ..+.|.+++... .+. . |.-.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~-~~~~~~~~~v~v~~--~~~~l~v~~~~~----------~~~-------------~--~~~~ 54 (92)
T cd06468 3 KYAWDQSDKFVKIYITLK-GVHQLPKENIQVEF--TERSFELKVHDL----------NGK-------------N--YRFT 54 (92)
T ss_pred eeeeecCCCEEEEEEEcc-CCCcCCcccEEEEe--cCCEEEEEEECC----------CCc-------------E--EEEE
Confidence 579999999999999999 9876 9999999 567899887430 011 1 3333
Q ss_pred E-ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 110 F-NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 110 f-~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
+ .|-..|+. +..+.++..+-+.|+|.|.++
T Consensus 55 ~~~L~~~I~~--e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 55 INRLLKKIDP--EKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred ehHhhCccCc--cccEEEEeCCEEEEEEEeCCC
Confidence 4 37777866 999999999999999999965
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.32 E-value=0.0034 Score=44.30 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=57.1
Q ss_pred eeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847 34 GEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP 113 (172)
Q Consensus 34 vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP 113 (172)
.+|+++.+...|.+.+|.|++++|++|++ ..+.|+++... . .. | -.-.|.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~--~~~~l~v~~~~-----~--------~~--------------~-~~g~L~ 50 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKF--LPDHISIALKD-----Q--------AP--------------L-LEGKLY 50 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEE--ecCEEEEEeCC-----C--------Ce--------------E-EeCccc
Confidence 36899999999999996599999999999 45678876421 0 00 1 122566
Q ss_pred CCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847 114 EGVIVKPNCFKASVEDG-VLNVIFTKLKS 141 (172)
Q Consensus 114 ~~vd~~~d~I~A~~~nG-VL~V~vPK~~~ 141 (172)
..|+. +.-.-++++| .|.|+|.|+++
T Consensus 51 ~~I~~--d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 51 SSIDH--ESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred Ccccc--cCcEEEEeCCCEEEEEEEECCC
Confidence 77766 8888888777 79999999864
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.92 E-value=0.015 Score=42.38 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=59.9
Q ss_pred ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847 32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN 111 (172)
Q Consensus 32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~ 111 (172)
....|..|.+...|.+.||.|+++.|++|.+ ..+.|+|.-.- ..+ -.| .
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i--~~~~l~V~~~g-------------~~~------l~G--~-------- 54 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKL--GSRDISLAVKG-------------QEV------LKG--K-------- 54 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEE--EcCEEEEEECC-------------EEE------EcC--c--------
Confidence 5689999999999999999999999999999 55678776311 011 234 3
Q ss_pred CCCCCcCCCCcEEEEEeCCE-EEEEEeccCCC
Q 039847 112 LPEGVIVKPNCFKASVEDGV-LNVIFTKLKSK 142 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~nGV-L~V~vPK~~~~ 142 (172)
|...|+. +.-.-++++|- |.|+|.|....
T Consensus 55 L~~~I~~--destWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 55 LFDSVVA--DECTWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred ccCccCc--ccCEEEEECCcEEEEEEEeCCCC
Confidence 5566766 88888898875 89999998643
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.46 E-value=0.073 Score=39.61 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=57.1
Q ss_pred CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847 31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF 110 (172)
Q Consensus 31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f 110 (172)
.|+++|+++.+...|++++| + .+|++|.+ ..+.|+++|.. . ++.. |.-.+
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~-d--~~d~~v~l--~~~~l~f~~~~-----~-----~g~~---------------y~~~l 50 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVE-D--SKDVKVDF--EKSKLTFSCLN-----G-----DNVK---------------IYNEI 50 (106)
T ss_pred CCcceeeECCCEEEEEEEeC-C--CCCcEEEE--ecCEEEEEEEC-----C-----CCcE---------------EEEEE
Confidence 37899999999999999999 8 57999999 45689999843 1 1111 22344
Q ss_pred ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
.|=..|+. ++-+-+...--+.|.|.|.+.
T Consensus 51 ~l~~~I~p--e~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 51 ELYDRVDP--NDSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred EeecccCc--ccCeEEeCCceEEEEEEeCCC
Confidence 55556655 666666666678889999864
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.25 E-value=0.035 Score=48.92 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=64.9
Q ss_pred CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847 31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF 110 (172)
Q Consensus 31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f 110 (172)
.++.||+++++..+|.+.+. |+.++++.|++ ..+.|.|+-..+. + . . |...+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~--~~~~l~v~~~~~~----------~-~------------~--y~~~~ 207 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDF--GEQILSVVIEVPG----------E-D------------A--YHLQP 207 (356)
T ss_pred ccccceeecCCEEEEEEEec-CCChHHcEEEe--ecCEEEEEEecCC----------C-c------------c--eeecc
Confidence 37899999999999999999 99999999999 5678888865410 0 0 1 44457
Q ss_pred ECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
.|-..|+. ++.+-++.---+.|+|.|.+.
T Consensus 208 ~L~~~I~p--~~s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 208 RLFGKIIP--DKCKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred cccccccc--cccEEEEecceEEEEEecCCC
Confidence 88888876 888888887899999998864
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.09 E-value=0.026 Score=46.30 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=55.6
Q ss_pred CceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847 31 NINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF 110 (172)
Q Consensus 31 ~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f 110 (172)
.++.||+++....+|.+..+ |+.++|++|++ ..++|.|..+-+. +.. |.-..
T Consensus 3 k~r~DwyQt~~~vvIti~~k-~v~~~~v~v~~--s~~~l~~~~~~~~----------g~~---------------~~l~~ 54 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAK-NVPKEDVNVEI--SENTLSIVIQLPS----------GSE---------------YNLQL 54 (196)
T ss_pred cccceeecCCceEEEEEEec-CCCccceeEEe--ecceEEEEEecCC----------chh---------------hhhhH
Confidence 47899999999999999999 99999999999 4577877765521 111 22233
Q ss_pred ECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847 111 NLPEGVIVKPNCFKASVEDGVLNVIFTKLK 140 (172)
Q Consensus 111 ~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~ 140 (172)
.|-..|.. ++.+-+.----+.|+|+|.+
T Consensus 55 ~L~~~I~p--e~~s~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 55 KLYHEIIP--EKSSFKVFSTKVEITLAKAE 82 (196)
T ss_pred Hhcccccc--cceeeEeeeeeEEEEecccc
Confidence 34444544 65555555556677777753
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=94.90 E-value=0.87 Score=32.33 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=52.8
Q ss_pred eeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847 34 GEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP 113 (172)
Q Consensus 34 vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP 113 (172)
.||+.+++..+|.+... +....+..|.+....+.|+|+-.. . + . . |...|.|=
T Consensus 1 ~DWyQt~~~Vtitiy~K-~~~~~~~~v~v~~~~~~l~v~~~~-----~------~-~------------~--~~~~~~L~ 53 (87)
T cd06490 1 YDWFQTDSEVTIVVYTK-SKGNPADIVIVDDQQRELRVEIIL-----G------D-K------------S--YLLHLDLS 53 (87)
T ss_pred CCceECCCEEEEEEEEc-ccCCCCccEEEECCCCEEEEEEEC-----C------C-c------------e--EEEeeecc
Confidence 48999999999999988 755445444442255578876543 0 0 0 2 55666777
Q ss_pred CCCcCCCCc-EEEEEeCCEEEEEEeccCC
Q 039847 114 EGVIVKPNC-FKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 114 ~~vd~~~d~-I~A~~~nGVL~V~vPK~~~ 141 (172)
..++. +. ++....-|-+.|+|.|++.
T Consensus 54 ~~I~~--~~~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 54 NEVQW--PCEVRISTETGKIELVLKKKEP 80 (87)
T ss_pred ccCCC--CcEEEEcccCceEEEEEEcCCC
Confidence 77755 64 3333347899999999864
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.70 E-value=0.56 Score=33.46 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=54.1
Q ss_pred EEECCCeEEEEEecCCC--CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECC
Q 039847 36 WDDAGDNLMFKATLPTG--TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLP 113 (172)
Q Consensus 36 i~Et~d~~vv~adLP~G--v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP 113 (172)
|..|.++..|.+.||.| +++.|++|.+ ..+.|++.-.- .... -.| . |.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i--~~~~l~v~~~g-------------~~~~-----i~G--~--------L~ 52 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDI--QRKHLKVGLKG-------------QPPI-----IDG--E--------LY 52 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEE--ecCEEEEEECC-------------CceE-----EeC--c--------cc
Confidence 67888999999999865 8899999999 55677775321 0111 234 3 55
Q ss_pred CCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847 114 EGVIVKPNCFKASVEDG-VLNVIFTKLKS 141 (172)
Q Consensus 114 ~~vd~~~d~I~A~~~nG-VL~V~vPK~~~ 141 (172)
..|+. |.-.=.+++| .|.|+|-|...
T Consensus 53 ~~V~~--des~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 53 NEVKV--EESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred Ccccc--cccEEEEeCCCEEEEEEEECCC
Confidence 66766 8888889886 89999999853
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.29 E-value=1.8 Score=32.02 Aligned_cols=81 Identities=14% Similarity=0.214 Sum_probs=58.3
Q ss_pred ceeeEEECCCeEEEEEecCCC-CCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEE
Q 039847 32 INGEWDDAGDNLMFKATLPTG-TKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSF 110 (172)
Q Consensus 32 p~vDi~Et~d~~vv~adLP~G-v~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f 110 (172)
.+.-|..|.++..|++.||.| .+..|++|.+ ..+.|.|.-.. . .+...+ -.| .
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i--~~~~l~v~~~~-----~-----~~~~~~-----i~G--~------- 58 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDL--QSSSIRVSVRD-----G-----GGEKVL-----MEG--E------- 58 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEE--EcCEEEEEEec-----C-----CCCceE-----EeC--c-------
Confidence 467899999999999999977 4678999999 56678776532 0 000111 234 3
Q ss_pred ECCCCCcCCCCcEEEEEeCC-EEEEEEeccCC
Q 039847 111 NLPEGVIVKPNCFKASVEDG-VLNVIFTKLKS 141 (172)
Q Consensus 111 ~LP~~vd~~~d~I~A~~~nG-VL~V~vPK~~~ 141 (172)
|...|+. +.-.-++++| .|.|+|-|..+
T Consensus 59 -L~~~V~~--des~Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 59 -FTHKINT--ENSLWSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred -ccCcccC--ccceEEEeCCCEEEEEEEECCC
Confidence 5666777 8888889996 48999999853
No 42
>PF14913 DPCD: DPCD protein family
Probab=81.71 E-value=16 Score=30.32 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=60.3
Q ss_pred cCceeeEEECCCeEEEEE-ecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEE
Q 039847 30 LNINGEWDDAGDNLMFKA-TLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISK 108 (172)
Q Consensus 30 ~~p~vDi~Et~d~~vv~a-dLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R 108 (172)
.+|-+==.+|..+|..++ .|| +.++--+|+++.+++.++|+-.- - + |.+
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP--YP~dvYsVtvd~~~r~ivvRTtN------------------------K--K--YyK 134 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP--YPKDVYSVTVDEDERCIVVRTTN------------------------K--K--YYK 134 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC--CCccceEEEEcCCCcEEEEECcC------------------------c--c--cee
Confidence 456666688999999988 899 89999999996666667766221 1 4 667
Q ss_pred EEECCCC----CcCCCCcEEEEEeCCEEEEEEecc
Q 039847 109 SFNLPEG----VIVKPNCFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 109 ~f~LP~~----vd~~~d~I~A~~~nGVL~V~vPK~ 139 (172)
+|.+|+- +..++++++..+.|..|.|+-.|-
T Consensus 135 k~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 135 KFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKP 169 (194)
T ss_pred EecCCcHHhhCCCcchhhceeeeecCeEEEEecCc
Confidence 7888752 333558899999999999998776
No 43
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=80.37 E-value=1.4 Score=38.73 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=55.9
Q ss_pred cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847 30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS 109 (172)
Q Consensus 30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~ 109 (172)
+..+.||.+|.+...|.+.-| -++.|++++-+ .+|+|.|+-+-+. | +..|.-.
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~-pv~deqVs~~~--e~NTL~I~~q~~~----------------------~--~~~~~~~ 227 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRP-PVGDEQVSPVL--EGNTLSISYQPRR----------------------L--RLWNDIT 227 (368)
T ss_pred ceeeeeccccceeEEEEEecC-CCCccccceee--cCCcceeeeeccc----------------------c--chHHHhh
Confidence 456778889988888877777 79999999999 7899999876511 1 0114445
Q ss_pred EECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847 110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLK 140 (172)
Q Consensus 110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~ 140 (172)
..|-..|.. +...-+.---++.|+|-|.+
T Consensus 228 ~~Ly~ev~P--~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 228 ISLYKEVYP--DIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred hhhhhhcCc--chhhhhhcchhheehhhhhh
Confidence 566666644 55555554466667666654
No 44
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=73.68 E-value=17 Score=31.67 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=66.3
Q ss_pred cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847 30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS 109 (172)
Q Consensus 30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~ 109 (172)
..-+-||+.|+...++.+..- |.-++--.|+. ++-+|.++-.. ..| .++|...
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k-~~lpe~s~iea--n~~~l~V~ivf----------------------~~g--na~fd~d 265 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAK-GALPETSNIEA--NGTTLHVSIVF----------------------GFG--NASFDLD 265 (320)
T ss_pred ccchhhhhhcCCeEEEEEEec-cCCcccceeee--CCeEEEEEEEe----------------------cCC--Cceeecc
Confidence 456789999999999999888 88888888888 67777776554 122 2227778
Q ss_pred EECCCCCcCCCCcEEEEEeCCEEEEEEeccCCC
Q 039847 110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSK 142 (172)
Q Consensus 110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~ 142 (172)
+.|=.-|++ ++-++.|----..|+|+|+++-
T Consensus 266 ~kLwgvvnv--e~s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 266 YKLWGVVNV--EESSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred ceeeeeech--hhceEEeecceEEEEEeccCCC
Confidence 888777888 8999999888999999999763
No 45
>PRK14290 chaperone protein DnaJ; Provisional
Probab=67.67 E-value=38 Score=30.06 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=25.6
Q ss_pred EEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeecee
Q 039847 109 SFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 109 ~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
.++|.+.+-= ..+.-..-+|.++|.||... ....+.+|.|.
T Consensus 277 ~Isl~eAl~G--~~~~I~~~~g~i~V~Ip~g~-~~g~~iri~g~ 317 (365)
T PRK14290 277 KINFPQAALG--GEIEIKLFREKYNLKIPEGT-QPGEVLKIKGA 317 (365)
T ss_pred EeCHHHHhCC--CEEEEEcCCceEEEEECCcc-CCCcEEEECCC
Confidence 4555544433 55666677899999999653 33445666663
No 46
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=58.65 E-value=25 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=28.5
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
|.=...|| +++. +.|+-++.+|.|+|+--+...
T Consensus 10 ~~v~adlP-G~~k--edI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 10 VLASVDVC-GFEP--DQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEECC-CCCH--HHeEEEEECCEEEEEEEEecc
Confidence 88899999 5766 999999999999999877643
No 47
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=56.83 E-value=53 Score=26.92 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=54.6
Q ss_pred cCceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847 30 LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS 109 (172)
Q Consensus 30 ~~p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~ 109 (172)
.+|.+-|.++.+-+.+++.++ ...+.+|.+ +...|+++|.. . .... . +...
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ve---d~~d~~v~~--e~~~l~fs~k~-----~-----~d~~------------~--~~~~ 56 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVE---DAKDVHVNL--EPSKLTFSCKS-----G-----ADNH------------K--YENE 56 (180)
T ss_pred cCCcchhhhhcCeEEEEEEec---cCccceeec--cccEEEEEecc-----C-----CCce------------e--eEEe
Confidence 357799999999999999999 455677777 56689999987 2 1111 1 3344
Q ss_pred EECCCCCcCCCCcEEEEEeCCEEEEEEeccCCC
Q 039847 110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSK 142 (172)
Q Consensus 110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~ 142 (172)
|.|=..|+. ++.+-+-. +-+...++++...
T Consensus 57 ief~~eIdp--e~sk~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 57 IEFFDEIDP--EKSKHKRT-SRSIFCILRKKEL 86 (180)
T ss_pred eehhhhcCH--hhcccccc-ceEEEEEEEcccc
Confidence 555566655 66665555 6667777766544
No 48
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=56.25 E-value=84 Score=23.61 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=48.4
Q ss_pred ceeeEEECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEE
Q 039847 32 INGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFN 111 (172)
Q Consensus 32 p~vDi~Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~ 111 (172)
..+.|...++ .-++++.. |= .++++. ++++|+|+.+. ...- -...|+...+ .. . -.=.+.
T Consensus 66 ~~V~I~~~~~-~~i~v~~~-~k---~~~~~~--~~~~L~I~~~~-----~~~~--~~~~~~~~~~--~~--~--~~i~I~ 125 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEYN-GK---KPEISV--EGGTLTIKSKD-----RESF--FFKGFNFNNS--DN--K--SKITIY 125 (166)
T ss_pred eeEEEEEcCC-ccEEEEEc-Cc---EEEEEE--cCCEEEEEEec-----cccc--ccceEEEccc--CC--C--cEEEEE
Confidence 3445555433 44455544 32 466666 78899998763 1100 0112222111 11 2 557899
Q ss_pred CCCCCcCCCCcEEEEEeCCEEEEEE
Q 039847 112 LPEGVIVKPNCFKASVEDGVLNVIF 136 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~nGVL~V~v 136 (172)
||++... ++|+.+..+|-+++.=
T Consensus 126 lP~~~~l--~~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 126 LPKDYKL--DKIDIKTSSGDITIED 148 (166)
T ss_pred ECCCCce--eEEEEEeccccEEEEc
Confidence 9998877 8899999999988763
No 49
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=55.84 E-value=24 Score=24.21 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEE
Q 039847 41 DNLMFKATLPTGTKMEELKIESTEDGKLLKLSKV 74 (172)
Q Consensus 41 d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGe 74 (172)
..|.-.+.||.+++.+.++-.+ .++++|+|+..
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~-~~~GvL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSL-SSDGVLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEe-CCCcEEEEEec
Confidence 4677889999889999999999 33489999864
No 50
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=54.56 E-value=20 Score=25.07 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEE
Q 039847 40 GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSK 73 (172)
Q Consensus 40 ~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsG 73 (172)
...|.-.+.||.++..+.|+-.+ .+++|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~--~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFL--ENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEE--ECCEEEEEe
Confidence 35788889999789999999999 567999874
No 51
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=53.74 E-value=63 Score=22.57 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=26.1
Q ss_pred CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEe
Q 039847 41 DNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 41 d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer 75 (172)
..|.-.+.||.++..+.|+..+ .+++|+|+..+
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~--~~GvL~I~~pk 87 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASY--ENGVLTITIPK 87 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEE--TTSEEEEEEEB
T ss_pred ceEEEEEcCCCcCCcceEEEEe--cCCEEEEEEEc
Confidence 4677789999889999999999 66799999988
No 52
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=53.72 E-value=13 Score=25.06 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=11.6
Q ss_pred CcEEEEEeCCEEEEE
Q 039847 121 NCFKASVEDGVLNVI 135 (172)
Q Consensus 121 d~I~A~~~nGVL~V~ 135 (172)
..|+|-|+||||.--
T Consensus 3 ~~I~aiYe~GvlkPl 17 (60)
T PF01954_consen 3 KVIEAIYENGVLKPL 17 (60)
T ss_dssp --EEEEEETTEEEEC
T ss_pred ceEEEEEECCEEEEC
Confidence 459999999999754
No 53
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=53.61 E-value=33 Score=24.05 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=28.8
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEeccCCC
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSK 142 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~ 142 (172)
|.=.+.|| ++.. +.|+-.++++.|+|+--+....
T Consensus 13 ~~v~~~lP-G~~k--edi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 13 YRITLAVA-GFSE--DDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred EEEEEECC-CCCH--HHeEEEEECCEEEEEEEEcccc
Confidence 88899999 5766 9999999999999997765443
No 54
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=53.56 E-value=26 Score=24.77 Aligned_cols=32 Identities=9% Similarity=-0.106 Sum_probs=27.5
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLK 140 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~ 140 (172)
|.=.+.|| +++. +.|+-++++|.|+|+--+..
T Consensus 9 ~~v~~dlp-G~~~--edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 9 FQILLDVV-QFRP--EDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred EEEEEEcC-CCCH--HHeEEEEECCEEEEEEEEcc
Confidence 88899999 4755 99999999999999987654
No 55
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=53.29 E-value=1.1e+02 Score=25.11 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=57.3
Q ss_pred CceeeEEECCCeEEEEEecCCCC-CCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEE
Q 039847 31 NINGEWDDAGDNLMFKATLPTGT-KMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKS 109 (172)
Q Consensus 31 ~p~vDi~Et~d~~vv~adLP~Gv-~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~ 109 (172)
.+...|..|=....|.+-+|+|+ +..+|.+.+ .++.|.|.-.- ...+ -.| .
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~I--q~~hI~V~~kg-------------~~~i-----ldG--~------ 69 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSI--QSKHIKVGLKG-------------QPPI-----LDG--E------ 69 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEe--eeeEEEEecCC-------------CCce-----ecC--c------
Confidence 35678999989999999999898 889999999 56666654222 0111 345 4
Q ss_pred EECCCCCcCCCCcEEEEEeCCEEEEEEeccCC
Q 039847 110 FNLPEGVIVKPNCFKASVEDGVLNVIFTKLKS 141 (172)
Q Consensus 110 f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~ 141 (172)
|...|++ +...-.+++|.+.|.+-|+..
T Consensus 70 --L~~~vk~--des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 70 --LSHSVKV--DESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred --ccccccc--ccceEEecCCEEEEEEeeccc
Confidence 5566777 889999999988888766543
No 56
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=52.65 E-value=29 Score=23.06 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=27.8
Q ss_pred CCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEE
Q 039847 40 GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKV 74 (172)
Q Consensus 40 ~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGe 74 (172)
...|.-.+.||.++..+.++..+ .++.|+|+..
T Consensus 55 ~~~f~r~~~LP~~vd~~~i~a~~--~~G~L~I~~p 87 (88)
T cd06464 55 YGSFSRSFRLPEDVDPDKIKASL--ENGVLTITLP 87 (88)
T ss_pred CcEEEEEEECCCCcCHHHcEEEE--eCCEEEEEEc
Confidence 57788899999889999999999 4579998753
No 57
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=52.20 E-value=32 Score=23.92 Aligned_cols=31 Identities=6% Similarity=0.006 Sum_probs=27.0
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEecc
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~ 139 (172)
|.=.+.|| +++. +.|+-++.+|.|+|+--+.
T Consensus 9 ~~v~~dlp-G~~~--edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 9 FSVNLDVK-HFSP--EELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred EEEEEECC-CCCH--HHeEEEEECCEEEEEEEEc
Confidence 88899999 6766 9999999999999998543
No 58
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=51.08 E-value=29 Score=24.38 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=26.6
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEecc
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~ 139 (172)
|.=.+.|| ++.. +.|+-+++||.|+|+--+.
T Consensus 9 y~v~~dlp-G~~~--edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 9 YQVFLDVC-HFTP--DEITVRTVDNLLEVSARHP 39 (83)
T ss_pred EEEEEEcC-CCCH--HHeEEEEECCEEEEEEEEc
Confidence 88899999 4755 9999999999999998654
No 59
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=50.58 E-value=31 Score=24.23 Aligned_cols=31 Identities=6% Similarity=0.006 Sum_probs=26.8
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEecc
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~ 139 (172)
|.=.+.|| +++. +.|+-++.+|.|+|+--+.
T Consensus 12 ~~v~~dlp-G~~~--edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 12 FTIYLDVK-HFSP--EDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEECC-CCCH--HHeEEEEECCEEEEEEEEc
Confidence 88899999 5755 9999999999999997543
No 60
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=46.76 E-value=50 Score=22.02 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=31.6
Q ss_pred CCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcCCCCcEEEEEeCCEEEE
Q 039847 55 MEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134 (172)
Q Consensus 55 kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~~~d~I~A~~~nGVL~V 134 (172)
++.++|++ .++.+++.|.. | . .++.||..+. ++.+.+++-+++
T Consensus 2 P~gV~v~~--~~~~i~v~G~~------------------------g--~----l~~~~~~~v~-----v~~~~~~~~~~~ 44 (77)
T PF00347_consen 2 PEGVKVTI--KGNIITVKGPK------------------------G--E----LSRPIPPGVK-----VEIKVEDNKITV 44 (77)
T ss_dssp STTCEEEE--ETTEEEEESSS------------------------S--E----EEEEETTTEE-----EEEEEETTSEEE
T ss_pred CCcEEEEE--eCcEEEEECCC------------------------E--e----EEEECCCCee-----EEEEcCCCceEE
Confidence 36788888 56888888765 3 2 4667776432 344467888888
Q ss_pred EEecc
Q 039847 135 IFTKL 139 (172)
Q Consensus 135 ~vPK~ 139 (172)
.....
T Consensus 45 ~~~~~ 49 (77)
T PF00347_consen 45 SVLSG 49 (77)
T ss_dssp EEEEE
T ss_pred EECcc
Confidence 76633
No 61
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=45.68 E-value=56 Score=26.18 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=15.9
Q ss_pred CceEEEEEeCCCEEEEEEEe
Q 039847 56 EELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 56 edI~V~v~~d~~~L~IsGer 75 (172)
++++|++ +++.|+++|.+
T Consensus 12 ~~V~v~~--~~~~v~v~Gp~ 29 (175)
T TIGR03654 12 AGVEVTI--DGNVVTVKGPK 29 (175)
T ss_pred CCcEEEE--eCCEEEEEcCC
Confidence 8899999 67899999976
No 62
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=45.68 E-value=34 Score=21.91 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=18.1
Q ss_pred CCCCCceEEEEEeCCCEEEEEEEec
Q 039847 52 GTKMEELKIESTEDGKLLKLSKVLP 76 (172)
Q Consensus 52 Gv~kedI~V~v~~d~~~L~IsGer~ 76 (172)
+++..+|+|.+ .++.++|+|.-+
T Consensus 13 ~~~~~~i~v~v--~~g~v~L~G~v~ 35 (64)
T PF04972_consen 13 WLPDSNISVSV--ENGVVTLSGEVP 35 (64)
T ss_dssp CTT-TTEEEEE--ECTEEEEEEEES
T ss_pred ccCCCeEEEEE--ECCEEEEEeeCc
Confidence 56666899999 577899999983
No 63
>PRK14284 chaperone protein DnaJ; Provisional
Probab=45.41 E-value=1.9e+02 Score=25.86 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=44.2
Q ss_pred eEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEE-EEeeeecCCCeeeEEE---------EEE
Q 039847 42 NLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWV-LKECCSSGDGKIDISK---------SFN 111 (172)
Q Consensus 42 ~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~-~~Er~~~G~~~~~F~R---------~f~ 111 (172)
.-.|.+.+|.|+. +|..|+++|+-.+.. .....++-++ .... ... . |.| .++
T Consensus 226 ~~~l~V~Ip~G~~----------~G~~i~~~g~G~~~~---~~~~~GDL~v~i~v~-~h~--~--F~R~G~DL~~~~~Is 287 (391)
T PRK14284 226 KRSVHVHIPAGVD----------SGMRLKMEGYGDAGQ---NGAPAGDLYVFIDVE-PHP--V--FERRGDDLILELPIG 287 (391)
T ss_pred eEEEEEEECCCCC----------CCCEEEEeccccCCC---CCCCCCCEEEEEEEe-cCC--C--ceeecCCEEEEEEec
Confidence 4567788887774 667788887752210 0011111121 1222 221 2 443 334
Q ss_pred CCCCCcCCCCcEEEEEe--CCEEEEEEeccCCCCcceeeece
Q 039847 112 LPEGVIVKPNCFKASVE--DGVLNVIFTKLKSKKKIMSKVLG 151 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~--nGVL~V~vPK~~~~k~~~~~I~~ 151 (172)
|.+-+.= ..++-..- +|.|+|+||+-. ....+.+|.|
T Consensus 288 l~eAl~G--~~~~v~tld~g~~i~v~Ip~g~-~~g~~~~i~g 326 (391)
T PRK14284 288 FVDAALG--MKKEIPTLLKEGTCRLTIPEGI-QSGTILKVRG 326 (391)
T ss_pred HHHHhCC--CeEEEeecCCCcEEEEEECCcc-CCCeEEEECC
Confidence 4443322 44555443 489999999653 3344556655
No 64
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=44.95 E-value=58 Score=26.12 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=18.3
Q ss_pred EecCCCCCCCceEEEEEeCCCEEEEEEEe
Q 039847 47 ATLPTGTKMEELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 47 adLP~Gv~kedI~V~v~~d~~~L~IsGer 75 (172)
+.+| ++++|++ +++.|+++|.+
T Consensus 9 I~IP-----~~V~v~~--~~~~v~vkGp~ 30 (178)
T PRK05498 9 IAIP-----AGVEVTI--NGNVVTVKGPK 30 (178)
T ss_pred eecC-----CCCEEEE--ECCEEEEECCC
Confidence 4566 8899999 67899999987
No 65
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=44.78 E-value=55 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=25.9
Q ss_pred CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEE
Q 039847 41 DNLMFKATLPTGTKMEELKIESTEDGKLLKLSK 73 (172)
Q Consensus 41 d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsG 73 (172)
..|.=...||.+++.+.|+-.++ .+++|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~-~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLS-PEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeC-CCCeEEEEc
Confidence 35566788998999999999994 366899986
No 66
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=44.22 E-value=36 Score=23.68 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.8
Q ss_pred CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEE
Q 039847 41 DNLMFKATLPTGTKMEELKIESTEDGKLLKLSK 73 (172)
Q Consensus 41 d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsG 73 (172)
..|.-.+.|| .+..+.++-.+ ++++|+|+-
T Consensus 62 g~f~r~~~lp-~v~~~~i~A~~--~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLP-NVDEEEIKAKY--ENGVLKITL 91 (93)
T ss_pred cEEEEEEECC-CCCHHHCEEEE--ECCEEEEEE
Confidence 3456667899 99999999999 567999874
No 67
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=43.23 E-value=70 Score=21.14 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEe
Q 039847 41 DNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 41 d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer 75 (172)
+.|.+..+||..+.+++....+ .++.|.|+=.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~--~~~~l~i~L~K 68 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKI--GNGVLVFTLVK 68 (78)
T ss_pred CCEEEEEeCcccccccccEEEE--eCCEEEEEEEe
Confidence 5688899999558999999999 56788988665
No 68
>PRK14298 chaperone protein DnaJ; Provisional
Probab=42.65 E-value=1.8e+02 Score=25.98 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=47.3
Q ss_pred eEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccE-EEEeeeecCCCeeeEEE---------EEE
Q 039847 42 NLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMW-VLKECCSSGDGKIDISK---------SFN 111 (172)
Q Consensus 42 ~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~-~~~Er~~~G~~~~~F~R---------~f~ 111 (172)
.-.+.+.+|.|+. +|..|++.|+-.+.. .....++-+ ....+ ... . |.| .++
T Consensus 213 ~~~l~V~IppG~~----------~G~~i~~~g~G~~~~---~~~~~GDL~i~i~v~-~h~--~--F~R~G~DL~~~~~Is 274 (377)
T PRK14298 213 TRKITVNVPAGAD----------SGLRLKLSGEGEAGS---PGAPSGDLYIVLHVK-EHD--Y--FERVGDDIISEIPIS 274 (377)
T ss_pred EEEEEecCCCCCC----------CCCEEEEecccCCCC---CCCCCcCEEEEEEEe-cCC--C--eEEEcCcEEEEEEeC
Confidence 3467778776764 567788887752210 011112222 22222 222 2 444 344
Q ss_pred CCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeeceee
Q 039847 112 LPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGVV 153 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~~ 153 (172)
|.+.+-= ..+.-..-+|-+.|++|.-. ....+.+|.|.=
T Consensus 275 l~eAl~G--~~~~i~tldG~i~v~ip~g~-~~g~~lri~g~G 313 (377)
T PRK14298 275 FTQAALG--ADIMVPTLYGKVKMNIPPGT-QTHSVFRLKDKG 313 (377)
T ss_pred HHHHhCC--CeEEEecCCCCEEEEeCCCc-ccCCEEEECCCC
Confidence 4443322 55666566788899999753 334466677643
No 69
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=42.35 E-value=50 Score=23.14 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=26.8
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEecc
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~ 139 (172)
|.=.+.|| +++. +.|+-++++|.|+|+--|.
T Consensus 10 ~~v~~dlp-G~~p--edi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 10 YQFAVDVS-DFSP--EDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred EEEEEECC-CCCH--HHeEEEEECCEEEEEEEEe
Confidence 88889999 5755 9999999999999997654
No 70
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=42.34 E-value=1.1e+02 Score=24.89 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccEEEEeeeecCCCeeeEEEEEECCCCCcCCCCcEEEEEeCCEEEE
Q 039847 55 MEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNV 134 (172)
Q Consensus 55 kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~~~~Er~~~G~~~~~F~R~f~LP~~vd~~~d~I~A~~~nGVL~V 134 (172)
|++++|++ +++.++++|.+ | + .+|.|.=|. ..|....+||-|.|
T Consensus 13 P~~V~V~i--~~~~v~VkGp~------------------------G--~--L~~~~~~~~------~~i~i~~~~~~i~v 56 (190)
T PTZ00027 13 PEGVTVTV--KSRKVTVTGKY------------------------G--E--LTRSFRHLP------VDIKLSKDGKYIKV 56 (190)
T ss_pred CCCCEEEE--ECCEEEEECCC------------------------c--e--EEEEecCCC------ceEEEEeCCCEEEE
Confidence 38999999 67899999876 3 4 444443211 23666778898888
Q ss_pred EEe
Q 039847 135 IFT 137 (172)
Q Consensus 135 ~vP 137 (172)
+-+
T Consensus 57 ~~~ 59 (190)
T PTZ00027 57 EMW 59 (190)
T ss_pred EeC
Confidence 855
No 71
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=41.84 E-value=89 Score=20.45 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=30.4
Q ss_pred eeeEE-ECCCeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEe
Q 039847 33 NGEWD-DAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 33 ~vDi~-Et~d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer 75 (172)
++.+. =..+.|.|++..| |+..-.-.|.+ ..+....|+.+-
T Consensus 26 p~~~~~l~~G~~~v~v~~~-Gy~~~~~~v~v-~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKP-GYEPYTKTVTV-KPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEEC-CCeeEEEEEEE-CCCCEEEEEEEE
Confidence 34555 4468999999999 99988888888 446666666553
No 72
>PRK10743 heat shock protein IbpA; Provisional
Probab=40.58 E-value=68 Score=24.74 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=25.9
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLK 140 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~ 140 (172)
|.=...|| +++. +.|+-++++|+|+|+--+..
T Consensus 47 ~~v~aelP-Gv~k--edi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAE--SELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCH--HHeEEEEECCEEEEEEEECc
Confidence 66778888 6766 99999999999999976543
No 73
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=40.55 E-value=69 Score=22.38 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=26.1
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
|.=.+.|| +++. +.|+-++.++.|+|+--+
T Consensus 9 ~~v~~dlp-G~~~--edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 9 FSVNLDVK-HFSP--EELKVKVLGDFIEIHGKH 38 (84)
T ss_pred EEEEEECC-CCCH--HHeEEEEECCEEEEEEEE
Confidence 88899998 5755 999999999999999844
No 74
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=39.99 E-value=14 Score=29.58 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=19.2
Q ss_pred CCCCCcCCCCcEEEEEeCCEEEEEEec
Q 039847 112 LPEGVIVKPNCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~nGVL~V~vPK 138 (172)
|-+.+.. +.-.+.|.||||||.|+-
T Consensus 65 l~e~~~~--~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEVPG--EGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhcCc--cccccccccceEEEEecC
Confidence 3445555 667889999999999983
No 75
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=39.53 E-value=60 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=27.2
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEecc
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~ 139 (172)
|.=.+.|| +++. +.|+-++.++.|+|+--+.
T Consensus 12 ~~v~~dlP-G~~~--edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 12 WKVSLDVN-HFAP--EELVVKTKDGVVEITGKHE 42 (86)
T ss_pred EEEEEECC-CCCH--HHEEEEEECCEEEEEEEEC
Confidence 88899999 5766 9999999999999998654
No 76
>PRK14281 chaperone protein DnaJ; Provisional
Probab=37.78 E-value=3e+02 Score=24.70 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=46.1
Q ss_pred EEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccE-EEEeeeecCCCeeeEEE-------E--EEC
Q 039847 43 LMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMW-VLKECCSSGDGKIDISK-------S--FNL 112 (172)
Q Consensus 43 ~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~-~~~Er~~~G~~~~~F~R-------~--f~L 112 (172)
-.+++.+|.|+. +|..|++.|+-.+.. .....++-+ ...+. ... . |.| . ++|
T Consensus 235 ~~~~V~Ip~G~~----------~G~~i~~~g~G~~~~---~~~~~GDL~i~i~~~-~h~--~--F~R~G~DL~~~~~Isl 296 (397)
T PRK14281 235 VTVKVTVPAGVQ----------DGNYLTLRGQGNAGP---RGGAPGDLIVVIEEK-PHE--L--FVRNGDDVIYNLAVSY 296 (397)
T ss_pred eEEEEecCCCCC----------CCCEEEEecccccCC---CCCCCCcEEEEEEEc-CCC--C--eEEecCCEEEEEEecH
Confidence 467788886754 566777777652210 001111222 22232 222 2 444 2 344
Q ss_pred CCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeecee
Q 039847 113 PEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 113 P~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
.+.+.= ..+.-..-+|-++|.+|.- ...-.+.+|.|.
T Consensus 297 ~eAl~G--~~~~i~tldg~i~v~ip~g-~~~G~~~ri~g~ 333 (397)
T PRK14281 297 PDLVLG--TKVEVPTLDGAVKLTIPAG-TQPETMLRIPGK 333 (397)
T ss_pred HHHhcC--CeEEeecCCccEEEEeCCc-cCCCcEEEEcCC
Confidence 443322 4555555578889999965 344556677664
No 77
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=37.62 E-value=1.5e+02 Score=23.69 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=15.6
Q ss_pred CceEEEEEeCCCEEEEEEEe
Q 039847 56 EELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 56 edI~V~v~~d~~~L~IsGer 75 (172)
++++|++ +++.++++|.+
T Consensus 8 ~~V~v~i--~~~~i~vkGp~ 25 (170)
T TIGR03653 8 EGVSVTI--EGNIVTVKGPK 25 (170)
T ss_pred CCCEEEE--eCCEEEEECCC
Confidence 7889999 67899999876
No 78
>PRK14287 chaperone protein DnaJ; Provisional
Probab=37.54 E-value=2.2e+02 Score=25.32 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=20.8
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCcceeeecee
Q 039847 121 NCFKASVEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 121 d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
..+.-..-+|-+.|.+|.-.. ...+.+|.|.
T Consensus 279 ~~~~i~~ldg~i~v~ip~g~~-~g~~~ri~g~ 309 (371)
T PRK14287 279 DEIEVPTLNGKVKLKIPAGTQ-TGTSFRLRGK 309 (371)
T ss_pred CEEEEEcCCCCEEEEECCCcc-CCcEEEEcCC
Confidence 556666677888999997533 3445667663
No 79
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=37.37 E-value=1.5e+02 Score=24.20 Aligned_cols=18 Identities=6% Similarity=0.287 Sum_probs=16.0
Q ss_pred CceEEEEEeCCCEEEEEEEe
Q 039847 56 EELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 56 edI~V~v~~d~~~L~IsGer 75 (172)
++++|++ +++.|+|+|.+
T Consensus 13 ~~V~V~i--~~~~ItVkGpk 30 (189)
T PTZ00179 13 EDVTVSV--KDRIVTVKGKR 30 (189)
T ss_pred CCCEEEE--eCCEEEEECCC
Confidence 8899999 67899999987
No 80
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=36.37 E-value=41 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.9
Q ss_pred cEEEEEeCCEEEEEEecc
Q 039847 122 CFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 122 ~I~A~~~nGVL~V~vPK~ 139 (172)
.+.+.+.+|||+|++|..
T Consensus 31 d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp TEEEEEETTEEEEEETTS
T ss_pred ceEEEccCCEEEEEECCC
Confidence 689999999999999654
No 81
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=35.84 E-value=1.6e+02 Score=23.83 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.7
Q ss_pred CceEEEEEeCCCEEEEEEEe
Q 039847 56 EELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 56 edI~V~v~~d~~~L~IsGer 75 (172)
++++|++ +++.++++|.+
T Consensus 14 ~~V~v~i--~~~~v~VkGp~ 31 (180)
T PRK05518 14 EGVTVEI--EGLVVTVKGPK 31 (180)
T ss_pred CCCEEEE--ECCEEEEECCC
Confidence 8889999 67899999987
No 82
>PRK14291 chaperone protein DnaJ; Provisional
Probab=35.66 E-value=2.9e+02 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=18.3
Q ss_pred CcEEEEEeCC-EEEEEEeccCCCCcceeeece
Q 039847 121 NCFKASVEDG-VLNVIFTKLKSKKKIMSKVLG 151 (172)
Q Consensus 121 d~I~A~~~nG-VL~V~vPK~~~~k~~~~~I~~ 151 (172)
..+.-..-+| .|+|.+|+-.. .-...+|.|
T Consensus 292 ~~~~i~~ldG~~l~V~Ip~g~~-~G~~i~i~G 322 (382)
T PRK14291 292 TELEVPLLDGKKEKVKIPPGTK-EGDKIRVPG 322 (382)
T ss_pred CEEEEecCCCCEEEEEECCccC-CCCEEEECC
Confidence 4455555677 69999997633 233455555
No 83
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=35.41 E-value=39 Score=24.95 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.5
Q ss_pred CcEEEEEeCCEEEEEEec
Q 039847 121 NCFKASVEDGVLNVIFTK 138 (172)
Q Consensus 121 d~I~A~~~nGVL~V~vPK 138 (172)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 468888999999999983
No 84
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=34.50 E-value=64 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=24.8
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEecc
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~ 139 (172)
|.=...|| +++. +.|+-.+++|.|+|+--+.
T Consensus 45 y~v~adlP-Gv~k--edi~V~v~~~~LtI~ge~~ 75 (142)
T PRK11597 45 YRITLALA-GFRQ--EDLDIQLEGTRLTVKGTPE 75 (142)
T ss_pred EEEEEEeC-CCCH--HHeEEEEECCEEEEEEEEc
Confidence 66677888 5766 8999999999999987644
No 85
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=34.31 E-value=41 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.0
Q ss_pred cEEEEEeCCEEEEEEec
Q 039847 122 CFKASVEDGVLNVIFTK 138 (172)
Q Consensus 122 ~I~A~~~nGVL~V~vPK 138 (172)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47888999999999985
No 86
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=33.19 E-value=74 Score=25.63 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.8
Q ss_pred EEecCCCCCCCceEEEEEeCCCEEEEEEEecC
Q 039847 46 KATLPTGTKMEELKIESTEDGKLLKLSKVLPE 77 (172)
Q Consensus 46 ~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~ 77 (172)
+.-||.|++++.|.=.++. +++|+|++..++
T Consensus 120 ~y~LP~~vdp~~V~S~LS~-dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSS-DGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCC-CceEEEEccCCC
Confidence 4469999999999999965 568999999843
No 87
>PRK14300 chaperone protein DnaJ; Provisional
Probab=32.93 E-value=3.5e+02 Score=24.02 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=19.0
Q ss_pred CcEEEEEeCC-EEEEEEeccCCCCcceeeecee
Q 039847 121 NCFKASVEDG-VLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 121 d~I~A~~~nG-VL~V~vPK~~~~k~~~~~I~~~ 152 (172)
..+.-..-+| .|+|.+|.-. +.-.+.+|.|.
T Consensus 282 ~~~~i~~ldg~~i~v~Ip~g~-~~g~~iri~g~ 313 (372)
T PRK14300 282 GEIEVPVIEGGKVNLTIPAGT-QNGDQLRLRSK 313 (372)
T ss_pred CEEEEecCCCCEEEEEECCcc-CCCcEEEECCC
Confidence 4444444454 9999999863 33445666653
No 88
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=32.49 E-value=1.1e+02 Score=21.38 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=27.2
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEeccC
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLK 140 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vPK~~ 140 (172)
|.=.+.|| ++.. +.|+-+++++.|+|+--+..
T Consensus 9 ~~v~~dlp-G~~~--edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 9 FSLKLDVR-GFSP--EDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred EEEEEECC-CCCh--HHeEEEEECCEEEEEEEEee
Confidence 88899999 4755 99999999999999986543
No 89
>PRK14278 chaperone protein DnaJ; Provisional
Probab=32.10 E-value=3.7e+02 Score=23.99 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=19.5
Q ss_pred CcEEEE-EeCCEEEEEEeccCCCCcceeeecee
Q 039847 121 NCFKAS-VEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 121 d~I~A~-~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
..+.-. +.+|.|+|.+|.- ...-.+.+|.|.
T Consensus 280 ~~~~i~tld~~~i~v~ip~g-~~~g~~lrl~g~ 311 (378)
T PRK14278 280 TTVTVEAILDGPSEITIPPG-TQPGSVITLRGR 311 (378)
T ss_pred CeEEEecCCCCeEEEEeCCC-cCCCcEEEECCC
Confidence 444444 3589999999965 333445666663
No 90
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=31.91 E-value=45 Score=24.75 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.4
Q ss_pred cEEEEEeCCEEEEEEecc
Q 039847 122 CFKASVEDGVLNVIFTKL 139 (172)
Q Consensus 122 ~I~A~~~nGVL~V~vPK~ 139 (172)
.+.+.+.+|||+|+++..
T Consensus 28 d~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 28 DIDCERNGGVLTLTFENG 45 (105)
T ss_pred CeeeeccCCEEEEEECCC
Confidence 378889999999999864
No 91
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=30.66 E-value=2.4e+02 Score=28.44 Aligned_cols=88 Identities=9% Similarity=-0.074 Sum_probs=46.3
Q ss_pred eEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEecCCCCCCCcccccccE-EEEeeeecCCCeeeEEE---------EEE
Q 039847 42 NLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMW-VLKECCSSGDGKIDISK---------SFN 111 (172)
Q Consensus 42 ~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer~~~~~~~e~~~~~~~~-~~~Er~~~G~~~~~F~R---------~f~ 111 (172)
.-.|.+.+|.|+. +|..|++.|+-.... .. .+.-+ ...++ ... . |.| .+.
T Consensus 696 ~ktLeVkIPpGVk----------dGqkIRf~GeGDegp----gg-~GDLyVvIkVK-PHp--~--FrRdGdDL~~~v~IS 755 (871)
T TIGR03835 696 AITLEIQLPITSQ----------LNISAIFKGFGHDFG----NG-CGDLKVVFKVI-PSN--F--FQIKNDGLHVAALVD 755 (871)
T ss_pred eEEEEEecCCCCC----------CCCEEEeccccCCCC----CC-CCCEEEEEEEc-CCC--C--eEEECCeEEEEEecC
Confidence 4567777776764 567788887752210 01 12222 22333 332 3 554 233
Q ss_pred CCCCCcCCCCcEEEEEeCCEEEEEEeccCCCCcceeeecee
Q 039847 112 LPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 112 LP~~vd~~~d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
|.+.+-- ..+.-.--+|-|+|.+|.. .....+.+|.|.
T Consensus 756 L~EALLG--gtIeIpTLDGrVkLkIPpg-TqpGqvLRIkGK 793 (871)
T TIGR03835 756 PLVAYNG--GIIDVFGPNKLFNVRIPGG-IKVNDQVIFKDL 793 (871)
T ss_pred HHHHhcC--CEEEeeCCCCCEEEeeCCC-CCCCcEEEECCC
Confidence 3333322 4455555678889999955 333455666663
No 92
>PRK14297 chaperone protein DnaJ; Provisional
Probab=29.92 E-value=4e+02 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=20.0
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCcceeeecee
Q 039847 121 NCFKASVEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 121 d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
..+.-..-+|-++|.||.- .....+.+|.|.
T Consensus 289 ~~~~i~~ldg~~~v~ip~g-~~~g~~~ri~g~ 319 (380)
T PRK14297 289 TEIKVPTVDGEVKYEVPAG-TQPGTVFRLKGK 319 (380)
T ss_pred CcEEEEcCCCcEEEEECCC-cCCCCEEEEcCC
Confidence 4455555668889999965 334455666664
No 93
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=28.97 E-value=1.8e+02 Score=19.40 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=26.4
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEEe
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIFT 137 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~vP 137 (172)
..=.|.+|+.+.. +.++..+.+.-|+|.+.
T Consensus 10 V~i~i~~~~~~~~--~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKS--KDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcc--eeEEEEEEcCEEEEEEC
Confidence 6678889998876 99999999999999986
No 94
>PRK14279 chaperone protein DnaJ; Provisional
Probab=28.08 E-value=4.4e+02 Score=23.64 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=20.6
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCcceeeecee
Q 039847 121 NCFKASVEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 121 d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
..+.-..-+|-++|+||+-. ..-.+.+|.|.
T Consensus 310 ~~~~v~~ldg~i~v~Ip~g~-~~g~~iri~g~ 340 (392)
T PRK14279 310 STLSVPTLDGPVGVKVPAGT-ADGRILRVRGR 340 (392)
T ss_pred ceEEEEcCCceEEEEECCCC-CCCCEEEECCC
Confidence 45566667788899999753 33445666664
No 95
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=28.01 E-value=2e+02 Score=23.14 Aligned_cols=22 Identities=14% Similarity=0.447 Sum_probs=18.1
Q ss_pred EecCCCCCCCceEEEEEeCCCEEEEEEEe
Q 039847 47 ATLPTGTKMEELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 47 adLP~Gv~kedI~V~v~~d~~~L~IsGer 75 (172)
+.+| ++++|++ +++.|+++|..
T Consensus 9 I~IP-----~~V~v~i--~~~~v~vkGp~ 30 (178)
T CHL00140 9 IKIP-----DNVNVSI--DDQIIKVKGPK 30 (178)
T ss_pred eecC-----CCCEEEE--ECCEEEEECCC
Confidence 4566 8889999 78899999876
No 96
>PRK14282 chaperone protein DnaJ; Provisional
Probab=27.93 E-value=4.3e+02 Score=23.42 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=18.6
Q ss_pred CcEEEEEeCC-EEEEEEeccCCCCcceeeece
Q 039847 121 NCFKASVEDG-VLNVIFTKLKSKKKIMSKVLG 151 (172)
Q Consensus 121 d~I~A~~~nG-VL~V~vPK~~~~k~~~~~I~~ 151 (172)
..+.-..-+| .|+|.+|+-. ....+.+|.|
T Consensus 293 ~~~~i~~ldG~~i~v~Ip~g~-~~g~~iri~G 323 (369)
T PRK14282 293 TTVEVPLPEGGTTMLKIPPGT-QPETVFRLKG 323 (369)
T ss_pred CEEEEeCCCCcEEEEEeCCCc-CCCCEEEECC
Confidence 4455555567 6999999753 3344556665
No 97
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=27.78 E-value=44 Score=24.45 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.5
Q ss_pred EEEEeCCEEEEEEecc
Q 039847 124 KASVEDGVLNVIFTKL 139 (172)
Q Consensus 124 ~A~~~nGVL~V~vPK~ 139 (172)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 7778999999999654
No 98
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=27.05 E-value=1.5e+02 Score=22.61 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=26.1
Q ss_pred CeEEEEEecCCCCCCCceEEEEEeCCCEEEEEEEe
Q 039847 41 DNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVL 75 (172)
Q Consensus 41 d~~vv~adLP~Gv~kedI~V~v~~d~~~L~IsGer 75 (172)
..|.-.+.||.+++.+.+..++ .+++|+|+-.+
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~--~nGvL~I~lpk 132 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKY--KNGLLTVTLPK 132 (146)
T ss_pred eeEEEEEECcccccccceeeEe--eCcEEEEEEec
Confidence 4566777888778888888888 67799998777
No 99
>PRK14296 chaperone protein DnaJ; Provisional
Probab=26.81 E-value=4.2e+02 Score=23.61 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=19.4
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCcceeeece
Q 039847 121 NCFKASVEDGVLNVIFTKLKSKKKIMSKVLG 151 (172)
Q Consensus 121 d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~ 151 (172)
-.+.-.-=+|-|+|++|.. ...-.+.+|.|
T Consensus 291 ~~~~i~tldG~~~v~ip~~-t~~g~~~ri~G 320 (372)
T PRK14296 291 NEIIIKTLDGDIKYKLPKS-INSNELIIINN 320 (372)
T ss_pred CEEEeeCCCCCEEEEECCc-cCCCcEEEEcC
Confidence 3455555678889999964 33455666665
No 100
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=24.91 E-value=1.5e+02 Score=21.28 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=26.3
Q ss_pred EEEEEECCCCCcCCCCcEEEEEeCCEEEEEE
Q 039847 106 ISKSFNLPEGVIVKPNCFKASVEDGVLNVIF 136 (172)
Q Consensus 106 F~R~f~LP~~vd~~~d~I~A~~~nGVL~V~v 136 (172)
-.=+|.||.++.. ..++.++...-|+|.+
T Consensus 17 V~v~i~lp~~~~~--kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGTRA--KDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEECCCCCce--eeEEEEEEcCEEEEEE
Confidence 6678899999977 9999999999999998
No 101
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=24.63 E-value=3.9e+02 Score=24.41 Aligned_cols=31 Identities=19% Similarity=0.014 Sum_probs=18.1
Q ss_pred CcEEEEEeCC-EEEEEEeccC-CCCcceeeece
Q 039847 121 NCFKASVEDG-VLNVIFTKLK-SKKKIMSKVLG 151 (172)
Q Consensus 121 d~I~A~~~nG-VL~V~vPK~~-~~k~~~~~I~~ 151 (172)
-.+.-.-=+| .|.|++|.-+ ...-.+.+|.|
T Consensus 291 ~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~g 323 (421)
T PTZ00037 291 FVFYITHLDGRKLLVNTPPGEVVKPGDIKVINN 323 (421)
T ss_pred CEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCC
Confidence 3455555567 5889988532 23344566666
No 102
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=22.43 E-value=5e+02 Score=22.30 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=19.3
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCcceeeece
Q 039847 121 NCFKASVEDGVLNVIFTKLKSKKKIMSKVLG 151 (172)
Q Consensus 121 d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~ 151 (172)
..+.-..-+|-+.|++|+.. ....+.+|.|
T Consensus 226 ~~~~i~~~~g~v~v~ip~g~-~~g~~~ri~g 255 (306)
T PRK10266 226 AKVTVPTLKESILLTIPPGS-QAGQRLRVKG 255 (306)
T ss_pred CEEEeeCCCccEEEEeCCCc-CCCCEEEECC
Confidence 34455556788899999754 3455566665
No 103
>PRK14280 chaperone protein DnaJ; Provisional
Probab=21.97 E-value=5.7e+02 Score=22.74 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=19.5
Q ss_pred CcEEEEEeCCEEEEEEeccCCCCcceeeecee
Q 039847 121 NCFKASVEDGVLNVIFTKLKSKKKIMSKVLGV 152 (172)
Q Consensus 121 d~I~A~~~nGVL~V~vPK~~~~k~~~~~I~~~ 152 (172)
-.+.-..-+|-++|++|.-.. ...+.+|.|.
T Consensus 284 ~~~~i~tldg~i~v~ip~g~~-~g~~~~i~g~ 314 (376)
T PRK14280 284 DEIEVPTLHGKVKLKIPAGTQ-TGTQFRLKGK 314 (376)
T ss_pred CEEEEecCCceEEEEECCCCC-CCcEEEEcCC
Confidence 445555457888999997533 3356667664
No 104
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=20.99 E-value=3.4e+02 Score=19.76 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=23.5
Q ss_pred cCceeeEEECCCeEEEEEecCCCC-----CCCceEEEE
Q 039847 30 LNINGEWDDAGDNLMFKATLPTGT-----KMEELKIES 62 (172)
Q Consensus 30 ~~p~vDi~Et~d~~vv~adLP~Gv-----~kedI~V~v 62 (172)
..|.|.|+++++.|.|.+--+ .. +++...|+-
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~-~~~~~~~~p~tY~i~~ 60 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYR-SGYTGRAKPETYPIQE 60 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEE-cCcCCcccceEEEEEE
Confidence 458999999999999988666 32 455555553
Done!