RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 039847
(172 letters)
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 34.2 bits (79), Expect = 0.005
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLS---KVLPEGDNGDGEHEAAVMWV 92
W + + +FKA +P G K E++K+E EDG++L++S K E D W
Sbjct: 4 WKETPEAHVFKADVP-GVKKEDVKVE-VEDGRVLRISGERKKEEEKKGDD--------WH 53
Query: 93 LKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTK 138
E S + F LPE KA +E+GVL V K
Sbjct: 54 RVERSSGR-----FVRRFRLPENADADE--VKAFLENGVLTVTVPK 92
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 33.7 bits (78), Expect = 0.008
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAV----M 90
+ + D + +A LP G K E++K+E EDG L +S GE E
Sbjct: 1 DVYETDDAYVVEADLP-GFKKEDIKVE-VEDGVL-TIS----------GEREEEEEEEEN 47
Query: 91 WVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTK 138
++ +E S+SF LPE V P+ KAS+E+GVL + K
Sbjct: 48 YLRRERSYG-----SFSRSFRLPEDV--DPDKIKASLENGVLTITLPK 88
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 32.3 bits (74), Expect = 0.047
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLK 94
+ ++ D A LP G E+++I + ++ + E + + E ++ +
Sbjct: 44 DIEETDDEYRITAELP-GVDKEDIEITVEGNTLTIRGER--EEEEEEEEEG-----YLRR 95
Query: 95 ECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
E + ++F LPE V P KA ++G+L V K + ++K
Sbjct: 96 ERAYG-----EFERTFRLPEKV--DPEVIKAKYKNGLLTVTLPKAEPEEK 138
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 30.2 bits (69), Expect = 0.13
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 23/103 (22%)
Query: 36 WDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKE 95
W D ++ LP G K E++K+E ++ +L +S G+ E E
Sbjct: 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDN--VLTIS----------GKRE--------E 39
Query: 96 CCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTK 138
+ +SF LPE V P KAS+E+GVL + K
Sbjct: 40 EEERERSYGEFERSFELPEDV--DPEKSKASLENGVLEITLPK 80
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 29.5 bits (67), Expect = 0.30
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLK 94
+ + D + K +P G K EELK++ ED ++L K E ++ +
Sbjct: 1 DIKEDKDAFVVKLDVP-GFKPEELKVK-VEDNRVLVKGKHEKEEEDDH--------GLRS 50
Query: 95 ECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
E S+ F LPE P+ KAS++DGVL V KL+ +K
Sbjct: 51 ERSYR-----SFSRKFVLPENA--DPDKVKASLKDGVLTVTVPKLEPPEK 93
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 27.8 bits (63), Expect = 1.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 107 SKSFNLPEGVIVKPNCFKASVEDGVLNVIFTK 138
S+SF LP V KA E+GVL + K
Sbjct: 65 SRSFYLPN---VDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|215266 PLN02481, PLN02481, Omega-hydroxypalmitate O-feruloyl transferase.
Length = 436
Score = 26.6 bits (59), Expect = 7.5
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 25 PALEFLNI----NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLS 72
P EF I + L++K+ K+E+LK + EDG + K S
Sbjct: 212 PHQEFAEIEDVSGTSKLYDDEELVYKSFCFDPEKLEKLKSMALEDGVIKKCS 263
>gnl|CDD|110302 pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.
Length = 467
Score = 26.7 bits (59), Expect = 8.3
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 33 NGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEA 87
+ E+ D +N FKA + G + ++ G + V+ +G ++
Sbjct: 274 DTEYKDILENSSFKAVILGGDAKDHNQV---VTGDFDVIRDVIKDGATFSRKNPG 325
>gnl|CDD|132282 TIGR03238, dnd_assoc_3, DNA phosphorothioation-dependent
restriction protein DptF. A DNA sulfur modification
(phosphorothioation) system, dnd (degradation during
electrophoresis), is sparsely and sporadically
distributed among the bacteria. This protein is one
member of a three-gene restriction enzyme cassette that
depends on DNA phosphorothioation [DNA metabolism,
Restriction/modification].
Length = 504
Score = 26.4 bits (58), Expect = 9.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 57 ELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDI 106
+ KI++ + L+K +K LP +L C SSGDGK +I
Sbjct: 11 KRKIQTDLERILVKFNKELPSSS------------LLFLCGSSGDGKSEI 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,629,620
Number of extensions: 779753
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 16
Length of query: 172
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 82
Effective length of database: 6,945,742
Effective search space: 569550844
Effective search space used: 569550844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)