RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039847
(172 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 46.6 bits (111), Expect = 3e-07
Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 1 MSSDDTDMDWELVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKI 60
+ D A F N +W + + +FKA LP G K EE+K+
Sbjct: 13 FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP-GVKKEEVKV 71
Query: 61 ESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSSGDGKIDISKSFNLPEGVIVKP 120
E EDG +L +S G+ + + W E S GK + F L E K
Sbjct: 72 E-VEDGNVLVVS-----GERTKEKEDKNDKWHRVERSS---GKF--VRRFRLLEDA--KV 118
Query: 121 NCFKASVEDGVLNVIFTKLKSKKK 144
KA +E+GVL V K + KK
Sbjct: 119 EEVKAGLENGVLTVTVPKAEVKKP 142
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 41.3 bits (97), Expect = 3e-05
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKL-LKLSKVLPEGDNGDGEHEAAVMWVL 93
+ ++ A LP G E++ + L ++ + + +
Sbjct: 60 SIIEGDQHIKVIAWLP-GVNKEDIILN-AVGDTLEIRAKRSPLMITESER-------IIY 110
Query: 94 KECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
E + I ++ LP V K A E+GVL+VI K +S K
Sbjct: 111 SEIPEEEE----IYRTIKLPATV--KEENASAKFENGVLSVILPKAESSIK 155
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 40.3 bits (95), Expect = 4e-05
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 17/110 (15%)
Query: 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLK 94
+ + G L+ A L G E++K + L + + E + L
Sbjct: 28 DMYEEGGYLVVVADLA-GFNKEKIKARVSGQN-ELIIE--------AEREITEPGVKYLT 77
Query: 95 ECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
+ + K LP V E+GVL + +
Sbjct: 78 QRPKY------VRKVIRLPYNVAKDAEI-SGKYENGVLTIRIPIAGTSVF 120
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 35.9 bits (84), Expect = 0.001
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 35 EWDDAGDNLMFKATLPTGTKMEELKIESTEDGKL-LKLSKVLPEGDNGDGEHEAAVMWVL 93
+ + ++ + A LP G +++++ + G L ++ + + +
Sbjct: 8 DIKEEVNHFVLYADLP-GIDPSQIEVQ-MDKGILSIRGERKSESSTETER-------FSR 58
Query: 94 KECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTK 138
E G + F LP+ + A+ +GVL + K
Sbjct: 59 IERRY---GSF--HRRFALPDSA--DADGITAAGRNGVLEIRIPK 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.20
Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 63/193 (32%)
Query: 9 DWELVPAANAFVTAVKPALEFL------------NINGEWDDAGDNLMFKATLPTGTKME 56
WE +F +V+ A+ L N + D+L +P + M
Sbjct: 288 SWE------SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SPM- 338
Query: 57 ELKIESTEDGKLLK-LSKV---LPEGD-------NGD------GEHEA---AVMWVLKEC 96
L I + ++ ++K LP G NG G ++ + + K
Sbjct: 339 -LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 97 CSSGDG---------KIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKK-KIM 146
SG K+ S F LP + P F + + ++I L
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRF-LP---VASP--FHSHLLVPASDLINKDLVKNNVSFN 451
Query: 147 SKVLGVVAKAVPV 159
+K + +PV
Sbjct: 452 AKDI-----QIPV 459
Score = 28.1 bits (62), Expect = 1.9
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 20/87 (22%)
Query: 12 LVPAANAFVTAVKPALEFLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLK- 70
LVP A+ F+ + L + F LP T+ E T +L+
Sbjct: 21 LVPTASFFIASQ------L-----QEQ------FNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 71 -LSKVLPEGDNGD-GEHEAAVMWVLKE 95
L V + G+ + + L E
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE 90
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 29.8 bits (66), Expect = 0.45
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 107 SKSFNLPEGVIVKPNCFKASVEDGVLNV 134
K+F PE V + +A + DG++ V
Sbjct: 283 YKAFVTPEVV--DASKTQAEIVDGLMVV 308
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 27.6 bits (62), Expect = 2.5
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 104 IDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKKIMSKVLGVVAKAVPVVVLI 163
+++++ + G +V + D + + I S + A P+VVL+
Sbjct: 248 VNVARML-VDRGDLV-------LIADS---------QGIRDIYSADGNSIDSATPLVVLV 290
>3nts_A VSDC; mono-ADP ribosyltransferase toxin, transferase; 3.40A
{Aeromonas hydrophila}
Length = 241
Score = 26.0 bits (56), Expect = 6.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 49 LPTGTKMEELKIESTEDGKLLKLSKVLPEGDN 80
PT T++ ++ S+ G L +P DN
Sbjct: 193 FPTQTRLRVDRVVSSTSGDFDTLLNTIPTSDN 224
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics,
joint center for structura genomics, JCSG, protein
structure initiative; 2.80A {Bacteroides vulgatus}
Length = 252
Score = 25.8 bits (56), Expect = 8.2
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 37 DDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKL--SKVLPEGD 79
+ D + K T TG + + LK+E DGK++K + V EGD
Sbjct: 3 EKKADTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGD 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,688,712
Number of extensions: 158600
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 12
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.7 bits)