RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039847
         (172 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 31.9 bits (72), Expect = 0.013
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 40  GDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAAVMWVLKECCSS 99
             ++   A LP G   E++ +       L   +K  P           + +   +E    
Sbjct: 19  DQHIKVIAWLP-GVNKEDIILN-AVGDTLEIRAKRSPLMITESERIIYSEIPEEEEI--- 73

Query: 100 GDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
                   ++  LP  V  K     A  E+GVL+VI  K +S  K
Sbjct: 74  -------YRTIKLPATV--KEENASAKFENGVLSVILPKAESSIK 109


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 30.1 bits (67), Expect = 0.073
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 29  FLNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNGDGEHEAA 88
           F N   +W +  +  +FKA LP G K EE+K+E  +               +G+   E  
Sbjct: 40  FANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNV---------LVVSGERTKEKE 89

Query: 89  VMWVLKECCSSGDGKIDISKSFNLPEGVIVKPNCFKASVEDGVLNVIFTKLKSKKK 144
                        GK    + F L E    K    KA +E+GVL V   K + KK 
Sbjct: 90  DKNDKWHRVERSSGKF--VRRFRLLEDA--KVEEVKAGLENGVLTVTVPKAEVKKP 141


>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 441

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 30  LNINGEWDDAGDNLMFKATLPTGTKMEELKIESTEDGKLLKLSKVLPEGDNG--DGEHEA 87
            +    W DAGD   +            L  E  +D +L  ++  +PE +N   D   E 
Sbjct: 56  KDSTKGWHDAGDYNKYVVNAGITVGSMFLAWEHFKD-QLEPVALEIPEKNNSIPDFLDEL 114

Query: 88  --AVMWVLKECCSSGDGKID 105
              + W+L      G G++ 
Sbjct: 115 KYEIDWILTMQYPDGSGRVA 134


>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 95

 Score = 24.2 bits (52), Expect = 5.6
 Identities = 4/23 (17%), Positives = 7/23 (30%)

Query: 83  GEHEAAVMWVLKECCSSGDGKID 105
                 +  V +      DG +D
Sbjct: 39  KLPVDILGRVWELSDIDHDGMLD 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 652,034
Number of extensions: 29912
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 9
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.4 bits)