BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039848
         (164 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54BT3|ABCB2_DICDI ABC transporter B family member 2 OS=Dictyostelium discoideum
            GN=abcB2 PE=3 SV=1
          Length = 1397

 Score = 32.3 bits (72), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 61   NISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSA 109
            N+SGL F  S   +F +   ++ W G  ++  GEW  K+  L +Y Y+ 
Sbjct: 1025 NVSGLSFGFSQCTLFFIYT-LTYWYGGKLVDSGEWPAKESTLETYCYNG 1072


>sp|Q68W42|Y691_RICTY Putative export ATP-binding/permease protein RT0691 OS=Rickettsia
           typhi (strain ATCC VR-144 / Wilmington) GN=RT0691 PE=3
           SV=1
          Length = 576

 Score = 30.0 bits (66), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 54  IYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSA 109
           IY  + + I  L F  SI  IFL  + +  W+GAS +  G+  +    +IS+IY A
Sbjct: 232 IYCKIRLKIRALFFAISIAVIFLT-ITLIVWIGASDIVQGD--LSAGQIISFIYYA 284


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.142    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,231,916
Number of Sequences: 539616
Number of extensions: 2142246
Number of successful extensions: 7250
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7248
Number of HSP's gapped (non-prelim): 14
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)