Query 039848
Match_columns 164
No_of_seqs 109 out of 605
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gww_B IPAA; protein complex, 50.6 7.3 0.00025 21.0 1.4 15 104-118 9-23 (30)
2 2z2q_B Coat protein gamma; wil 32.8 49 0.0017 19.7 3.2 33 87-119 8-41 (44)
3 3tj6_B Protein PS 120; cytoske 28.2 38 0.0013 17.5 1.9 14 105-118 2-15 (23)
4 1nov_D Nodamura virus coat pro 25.8 79 0.0027 18.8 3.2 32 87-118 8-40 (44)
5 2khf_A PLNJ; anti-microbial, b 16.8 93 0.0032 16.1 2.0 16 2-17 2-17 (26)
6 1q90_G Cytochrome B6F complex 16.1 1.7E+02 0.006 16.7 3.4 22 64-85 6-27 (37)
7 2rdd_B UPF0092 membrane protei 13.9 74 0.0025 17.8 1.2 16 28-43 4-19 (37)
8 3bux_B E3 ubiquitin-protein li 12.3 1.3E+02 0.0044 25.3 2.8 70 75-150 217-291 (329)
9 3arc_L Photosystem II reaction 12.0 2.3E+02 0.008 16.1 3.4 22 64-85 14-35 (37)
10 2yrv_A AT-rich interactive dom 10.8 4.6E+02 0.016 18.6 5.8 27 124-150 11-38 (117)
No 1
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=50.59 E-value=7.3 Score=21.04 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhC
Q 039848 104 SYIYSASKQISAAIS 118 (164)
Q Consensus 104 k~IY~~iK~i~~~~~ 118 (164)
+.||++.||+..+++
T Consensus 9 nniykaakdvttsls 23 (30)
T 2gww_B 9 NNIYKAAKDVTTSLS 23 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 468999999999876
No 2
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=32.78 E-value=49 Score=19.69 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhcch-hhHHHHHHHHHHHHhCC
Q 039848 87 ASILSLGEWLIKKMPL-ISYIYSASKQISAAISP 119 (164)
Q Consensus 87 ~~l~~~~e~ll~rIP~-vk~IY~~iK~i~~~~~~ 119 (164)
+++++..-..++.||+ |+.+-+.++++.+.+.+
T Consensus 8 k~ilks~l~a~S~iPGPVG~~asGi~~l~~l~~~ 41 (44)
T 2z2q_B 8 KSIIKSSLAAASNIPGPIGVAASGISGLSALFEG 41 (44)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHH
Confidence 5677777777888997 78888999999988753
No 3
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=28.18 E-value=38 Score=17.50 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhC
Q 039848 105 YIYSASKQISAAIS 118 (164)
Q Consensus 105 ~IY~~iK~i~~~~~ 118 (164)
-||+..+|+++++-
T Consensus 2 DIynkaqdv~~AL~ 15 (23)
T 3tj6_B 2 DIYNKAREVINAVN 15 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 48999999998874
No 4
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=25.77 E-value=79 Score=18.79 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcch-hhHHHHHHHHHHHHhC
Q 039848 87 ASILSLGEWLIKKMPL-ISYIYSASKQISAAIS 118 (164)
Q Consensus 87 ~~l~~~~e~ll~rIP~-vk~IY~~iK~i~~~~~ 118 (164)
+++++..-...+.||+ |+.+-+.++++.+.+.
T Consensus 8 k~ilks~l~~aS~iPGPVG~~asGi~gl~~l~~ 40 (44)
T 1nov_D 8 RSILKSGLNFASTIPGPVGVAATGIKGIIETIG 40 (44)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHH
Confidence 5677777777888997 7888888999888875
No 5
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=16.76 E-value=93 Score=16.09 Aligned_cols=16 Identities=31% Similarity=0.158 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHhc
Q 039848 2 LSKVIRSWAWKKFMTG 17 (164)
Q Consensus 2 ~~~~~~~~l~~~fl~G 17 (164)
-||..++.+++-|..|
T Consensus 2 awknfwsslrkgfydg 17 (26)
T 2khf_A 2 AWKNFWSSLRKGFYDG 17 (26)
T ss_dssp CHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhhcccc
Confidence 3788888888888766
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=16.09 E-value=1.7e+02 Score=16.67 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 039848 64 GLGFMTSITFIFLVGVFMSSWL 85 (164)
Q Consensus 64 glgl~~~l~li~~vG~l~~~~~ 85 (164)
-.|+++-++-+.++|+++..+.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHH
Confidence 3566777778888888877653
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=13.88 E-value=74 Score=17.80 Aligned_cols=16 Identities=6% Similarity=0.307 Sum_probs=9.1
Q ss_pred eeehHHHHHHHHHHHH
Q 039848 28 VILLPIAITFYLTWWF 43 (164)
Q Consensus 28 lvllPl~iTi~vl~~l 43 (164)
..++|+++.+.+.|++
T Consensus 4 ~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFM 19 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456766665555544
No 8
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=12.35 E-value=1.3e+02 Score=25.29 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhcchhh--HHHHHHHHHHHHhCCCccCCCcCcEEEEEeC--CCCeeEEEEEcccc
Q 039848 75 FLVGVFMSSWLG-ASILSLGEWLIKKMPLIS--YIYSASKQISAAISPDQKTKAFKEVAIIRHP--RIGESAIGFITSTL 149 (164)
Q Consensus 75 ~~vG~l~~~~~g-~~l~~~~e~ll~rIP~vk--~IY~~iK~i~~~~~~~~~~~~f~~VVlVe~p--~~g~~~iGFvT~~~ 149 (164)
|-.+...+.+-- ...++.++.+....|+.- .=|.-+++..+... ++ . .--++++. +.|.|+||||+++.
T Consensus 217 feFdvFtr~FqPw~~ll~nw~~la~~hpGy~aFlTydEv~~~L~~~~-~k-p----GsYIfR~ScTrlGqwAIgyV~~~~ 290 (329)
T 3bux_B 217 FEFDIFTRLFQPWSSLLRNWNSLAVTHPGYMAFLTYDEVKARLQKFI-HK-P----GSYIFRLSCTRLGQWAIGYVTADG 290 (329)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHHTTSCTTBCTTCCHHHHHHHHGGGT-TS-T----TEEEEEECSSSTTSEEEEEECTTS
T ss_pred eecccHHHhhCchHHHHHHHHHHHhcCcchhheeeHHHHHHHHHHhc-CC-C----CcEEEEeccCccCceEEEEECCCC
Confidence 344444443321 455666677777778711 01344444444333 21 1 34567776 88999999999976
Q ss_pred c
Q 039848 150 I 150 (164)
Q Consensus 150 ~ 150 (164)
.
T Consensus 291 ~ 291 (329)
T 3bux_B 291 N 291 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=12.04 E-value=2.3e+02 Score=16.06 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 039848 64 GLGFMTSITFIFLVGVFMSSWL 85 (164)
Q Consensus 64 glgl~~~l~li~~vG~l~~~~~ 85 (164)
.-++-..++++|++|.+.++++
T Consensus 14 RTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhc
Confidence 3445556778888888888865
No 10
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=10.76 E-value=4.6e+02 Score=18.63 Aligned_cols=27 Identities=11% Similarity=0.018 Sum_probs=22.3
Q ss_pred CCcCcEEEEEe-CCCCeeEEEEEccccc
Q 039848 124 KAFKEVAIIRH-PRIGESAIGFITSTLI 150 (164)
Q Consensus 124 ~~f~~VVlVe~-p~~g~~~iGFvT~~~~ 150 (164)
+...+||.|+. ++++.|-.|.|.+.+-
T Consensus 11 e~lGkVV~V~~~~kk~~WfPALVVsPs~ 38 (117)
T 2yrv_A 11 ELLGKVVSVVSATERTEWYPALVISPSC 38 (117)
T ss_dssp SSTTSEEEEECSSCSSCEEEEEEECCSS
T ss_pred HHcCcEEEEecCCCCCceeeeEEECCCC
Confidence 45779999997 4578999999988764
Done!