Query 039848
Match_columns 164
No_of_seqs 109 out of 605
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 03:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039848.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039848hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3buxb3 d.93.1.1 (B:264-351) C 22.3 20 0.0015 22.6 1.8 40 107-150 11-50 (88)
2 d1xmaa_ a.4.5.61 (A:) Predicte 18.6 72 0.0052 19.9 4.2 43 74-116 10-55 (103)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 16.6 78 0.0057 16.6 3.4 22 64-85 14-35 (37)
4 d2j43a1 b.3.1.3 (A:5-111) Pull 11.6 1.4E+02 0.01 18.9 4.2 27 124-150 49-75 (107)
5 d2uubc2 d.53.1.1 (C:107-207) R 10.9 1.5E+02 0.011 18.6 4.0 31 83-116 8-38 (101)
6 d2axti1 f.23.37.1 (I:1-35) Pho 10.8 95 0.007 16.1 2.4 16 33-48 10-25 (35)
7 d1q90g_ f.23.26.1 (G:) PetG su 9.4 1.3E+02 0.0092 15.0 3.5 20 65-84 7-26 (30)
8 d2vv5a3 f.34.1.1 (A:27-112) Me 9.1 1.9E+02 0.014 16.8 5.9 23 72-94 9-31 (86)
9 d2qalc2 d.53.1.1 (C:106-206) R 8.8 1.4E+02 0.01 18.8 3.2 31 83-116 8-38 (101)
10 d3d7ca1 a.29.2.1 (A:731-832) G 8.5 53 0.0039 20.4 0.9 26 105-130 2-27 (102)
No 1
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.32 E-value=20 Score=22.65 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCccCCCcCcEEEEEeCCCCeeEEEEEccccc
Q 039848 107 YSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLI 150 (164)
Q Consensus 107 Y~~iK~i~~~~~~~~~~~~f~~VVlVe~p~~g~~~iGFvT~~~~ 150 (164)
|.-+|.-.+....+ ..++ +--...-|-|-|+||+||++..
T Consensus 11 YDevk~rL~~~~~k--PGSY--iFRlSCTrlGQWAIGyvt~dg~ 50 (88)
T d3buxb3 11 YDEVKARLQKFIHK--PGSY--IFRLSCTRLGQWAIGYVTADGN 50 (88)
T ss_dssp HHHHHHHHGGGTTS--TTEE--EEEECSSSTTSEEEEEECTTSC
T ss_pred HHHHHHHHHHHhcC--CCce--EEeeccccccceeeeeeccCCc
Confidence 67777777777643 1222 3323345889999999999764
No 2
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=18.59 E-value=72 Score=19.86 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHHH
Q 039848 74 IFLVGVFMSS-WLGASILSLGEWLIKKM--PLISYIYSASKQISAA 116 (164)
Q Consensus 74 i~~vG~l~~~-~~g~~l~~~~e~ll~rI--P~vk~IY~~iK~i~~~ 116 (164)
.+++|.+... .-|-.+.+.++...... |--+++|.+.|++.+.
T Consensus 10 ~~IL~lL~~~~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~ 55 (103)
T d1xmaa_ 10 TIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKN 55 (103)
T ss_dssp HHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCccHHHHHHHHHHHcCCeecCCCCchHHHHHHHHHC
Confidence 3455666654 55667777777655432 3448999999999876
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.58 E-value=78 Score=16.62 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 039848 64 GLGFMTSITFIFLVGVFMSSWL 85 (164)
Q Consensus 64 glgl~~~l~li~~vG~l~~~~~ 85 (164)
.-++-..++++|++|.+.++++
T Consensus 14 rtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3445556778888898888875
No 4
>d2j43a1 b.3.1.3 (A:5-111) Pullulanase PulA {Streptococcus pyogenes [TaxId: 1314]}
Probab=11.60 E-value=1.4e+02 Score=18.88 Aligned_cols=27 Identities=0% Similarity=0.022 Sum_probs=21.5
Q ss_pred CCcCcEEEEEeCCCCeeEEEEEccccc
Q 039848 124 KAFKEVAIIRHPRIGESAIGFITSTLI 150 (164)
Q Consensus 124 ~~f~~VVlVe~p~~g~~~iGFvT~~~~ 150 (164)
..|-..+-|+++.++...+||+..+..
T Consensus 49 D~yGay~~v~L~~~~~~~igfIV~~~~ 75 (107)
T d2j43a1 49 DDYGYYLDVPLAAKHRQQVSYLINNKA 75 (107)
T ss_dssp CSSSEEEEEEBCSSCCCEEEEEEEETT
T ss_pred cCceEEEEEEecCCCCceEEEEEEcCC
Confidence 458788889987667899999998543
No 5
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.85 E-value=1.5e+02 Score=18.61 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 039848 83 SWLGASILSLGEWLIKKMPLISYIYSASKQISAA 116 (164)
Q Consensus 83 ~~~g~~l~~~~e~ll~rIP~vk~IY~~iK~i~~~ 116 (164)
..++..+-+.+| .+.|+-|..|+++++++++
T Consensus 8 ~~vA~~Ia~~Le---r~~~fRra~~~~l~~~m~~ 38 (101)
T d2uubc2 8 PLVAQRVAEQIE---RRFAVRRAIKQAVQRVMES 38 (101)
T ss_dssp HHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---ccchHHHHHHHHHHHhhhc
Confidence 345566666667 7999999999999999875
No 6
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.79 E-value=95 Score=16.11 Aligned_cols=16 Identities=25% Similarity=0.712 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 039848 33 IAITFYLTWWFIHFVD 48 (164)
Q Consensus 33 l~iTi~vl~~l~~~v~ 48 (164)
.++++++.-++|++++
T Consensus 10 ~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 10 IVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhcc
Confidence 3455555555555554
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.37 E-value=1.3e+02 Score=15.00 Aligned_cols=20 Identities=15% Similarity=0.556 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039848 65 LGFMTSITFIFLVGVFMSSW 84 (164)
Q Consensus 65 lgl~~~l~li~~vG~l~~~~ 84 (164)
.|+++.++=+.++|+++..+
T Consensus 7 ~GivlGlipiTl~Glfv~Ay 26 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAY 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHH
Confidence 35566666677777776654
No 8
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.07 E-value=1.9e+02 Score=16.80 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039848 72 TFIFLVGVFMSSWLGASILSLGE 94 (164)
Q Consensus 72 ~li~~vG~l~~~~~g~~l~~~~e 94 (164)
++++.+|+...++..+.+.+..|
T Consensus 9 l~il~i~~~i~~~i~~~~~~~~~ 31 (86)
T d2vv5a3 9 LAIIIVGLIIARMISNAVNRLMI 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555444444
No 9
>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.78 E-value=1.4e+02 Score=18.77 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 039848 83 SWLGASILSLGEWLIKKMPLISYIYSASKQISAA 116 (164)
Q Consensus 83 ~~~g~~l~~~~e~ll~rIP~vk~IY~~iK~i~~~ 116 (164)
..++..+-+.+| .++|+-+..|.+++.++++
T Consensus 8 ~~vA~~IA~~LE---rr~~fRr~~~~~i~~~m~~ 38 (101)
T d2qalc2 8 KLVADSITSQLE---RRVMFRRAMKRAVQNAMRL 38 (101)
T ss_dssp HHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH---cchHHHHHHHHHHHHHhhc
Confidence 456667777777 7999999999998888776
No 10
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.49 E-value=53 Score=20.44 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCccCCCcCcEE
Q 039848 105 YIYSASKQISAAISPDQKTKAFKEVA 130 (164)
Q Consensus 105 ~IY~~iK~i~~~~~~~~~~~~f~~VV 130 (164)
.+|+..+++++.+...+....|.++|
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv 27 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPV 27 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCC
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCC
Confidence 46888999988887665566788765
Done!