BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039849
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
          Length = 450

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 92  EANVDAAIRHSNWIAGLGVVIRDSKGKFV 120
           EA+V   +RHSN +  LGV++ +  G ++
Sbjct: 236 EASVMTQLRHSNLVQLLGVIVEEKGGLYI 264


>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
 pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
          Length = 263

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 92  EANVDAAIRHSNWIAGLGVVIRDSKGKFV 120
           EA+V   +RHSN +  LGV++ +  G ++
Sbjct: 49  EASVMTQLRHSNLVQLLGVIVEEKGGLYI 77


>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
           Complex With Inhibitor Staurosporine
          Length = 278

 Score = 27.3 bits (59), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 92  EANVDAAIRHSNWIAGLGVVIRDSKGKFV 120
           EA+V   +RHSN +  LGV++ +  G ++
Sbjct: 64  EASVMTQLRHSNLVQLLGVIVEEKGGLYI 92


>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
          Length = 269

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 92  EANVDAAIRHSNWIAGLGVVIRDSKGKFV 120
           EA+V   +RHSN +  LGV++ +  G ++
Sbjct: 55  EASVMTQLRHSNLVQLLGVIVEEKGGLYI 83


>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
           The Cul3 N- Terminal Domain
 pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
           The Cul3 N- Terminal Domain
          Length = 145

 Score = 26.6 bits (57), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 1   AQQDMLSALQELATSKSKKDLELIIVVCWSIWYSRNLFIFEGKRENSQSLVATTIGIVDS 60
           A+  + SA+ E    +SKK+   I  V   ++     FI+ GK  N   +    +   D 
Sbjct: 46  ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 105

Query: 61  YLI--IKILVDQIISKHQSINQQA 82
           Y +  +K++ +  +  + S+   A
Sbjct: 106 YALERLKVMCEDALCSNLSVENAA 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,092,106
Number of Sequences: 62578
Number of extensions: 179081
Number of successful extensions: 444
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 11
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)