BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039849
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15RP8|GLGC2_PSEA6 Glucose-1-phosphate adenylyltransferase 2 OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=glgC2 PE=3
SV=1
Length = 420
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 87 SSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQ 146
S WYE DA ++ + +IRD K+V + IY + A + A V G +
Sbjct: 105 SGNWYEGTADAVFQNID-------IIRDEIPKYVMILSGDHIYSMDYANILAHHVESGAK 157
Query: 147 VTKKIKCLPMIIE 159
+T + C+P+ IE
Sbjct: 158 MT--VSCMPVPIE 168
>sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana
GN=At1g65750 PE=3 SV=1
Length = 620
Score = 33.9 bits (76), Expect = 0.81, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 82 AWMPPSSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAV 141
W+ P GW + N D A R + +A G V+RD G + I + + E V
Sbjct: 451 GWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCG-GFSLNIGRCSAPQAELWGV 509
Query: 142 TLGIQVTKKIKCLPMIIELDSKEVV 166
G+ + K + +E+DS+ +V
Sbjct: 510 YYGLYFAWEKKVPRVELEVDSEVIV 534
>sp|C5C987|ENO_MICLC Enolase OS=Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM
1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230)
GN=eno PE=3 SV=1
Length = 425
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 19 KDLELIIVVCWSIWYSRNLFIFEGKRENSQSLVATTIGIVDSYLIIKI 66
+D+ L + V S ++ + + FEG++ +++ + A +VD+Y I+ I
Sbjct: 234 EDIALALDVASSEFFDKGSYTFEGQQRSAEEMAAYYTELVDNYPIVSI 281
>sp|O66778|ENO_AQUAE Enolase OS=Aquifex aeolicus (strain VF5) GN=eno PE=3 SV=1
Length = 426
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 4 DMLSALQELATSKSKKDLELIIVVCWSIWYSRNLFIFEGKRENSQSLVATTIGIVDSYLI 63
D+L E A K +D+ L + V S +Y ++ FEGK +++ ++ ++ Y I
Sbjct: 220 DILMQAIEKAGYKPGEDILLALDVASSEFYENGVYKFEGKERSAEEMIEFYEKLIQKYPI 279
Query: 64 IKI 66
I I
Sbjct: 280 ISI 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,165,899
Number of Sequences: 539616
Number of extensions: 2324908
Number of successful extensions: 5447
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5444
Number of HSP's gapped (non-prelim): 12
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)