Query 039849
Match_columns 202
No_of_seqs 212 out of 1267
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.8 3E-20 1E-24 136.7 13.6 112 90-202 3-116 (141)
2 3u3g_D Ribonuclease H, RNAse H 99.8 3.9E-20 1.3E-24 135.7 13.9 113 89-202 2-120 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.8 2.6E-19 9E-24 133.2 13.4 111 90-202 1-117 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.8 4.6E-18 1.6E-22 127.3 13.2 114 85-202 2-130 (154)
5 1zbf_A Ribonuclease H-related 99.7 5.4E-17 1.9E-21 119.6 10.2 102 84-189 5-111 (142)
6 1ril_A Ribonuclease H; hydrola 99.7 5.3E-17 1.8E-21 123.0 9.4 113 84-202 2-127 (166)
7 3qio_A GAG-POL polyprotein; RN 99.7 3.3E-16 1.1E-20 116.7 12.7 109 84-202 6-126 (150)
8 1jl1_A Ribonuclease HI; RNAse 99.6 2E-15 6.9E-20 113.0 11.8 107 90-202 4-122 (155)
9 3h08_A RNH (ribonuclease H); R 99.6 1.8E-15 6.1E-20 112.0 11.3 108 89-202 3-123 (146)
10 2e4l_A Ribonuclease HI, RNAse 99.6 4.5E-15 1.5E-19 111.4 12.4 108 89-202 5-124 (158)
11 3p1g_A Xenotropic murine leuke 99.6 4.9E-14 1.7E-18 106.4 15.9 116 81-202 14-130 (165)
12 2lsn_A Reverse transcriptase; 99.5 3.5E-13 1.2E-17 101.7 14.7 112 89-202 6-136 (165)
13 4htu_A Ribonuclease H, RNAse H 99.5 9.8E-14 3.4E-18 100.6 10.9 80 89-172 4-83 (134)
14 2kq2_A Ribonuclease H-related 99.5 3.4E-14 1.2E-18 105.4 4.5 109 87-202 3-116 (147)
15 2zd1_A Reverse transcriptase/r 99.3 1.6E-11 5.6E-16 108.9 11.6 107 84-202 433-539 (557)
16 1mu2_A HIV-2 RT; HIV-2 reverse 99.3 2.6E-11 9E-16 107.6 12.2 106 85-202 431-536 (555)
17 1uwz_A Cytidine deaminase; CDD 88.3 0.86 3E-05 32.4 5.2 56 105-161 23-78 (136)
18 2fr5_A Cytidine deaminase; tet 85.9 1.1 3.9E-05 32.3 4.7 56 105-161 35-90 (146)
19 2z3g_A Blasticidin-S deaminase 77.9 3.6 0.00012 28.9 4.8 54 105-161 26-79 (130)
20 1r5t_A Cytidine deaminase; zin 75.7 4.6 0.00016 28.8 4.9 57 105-161 31-87 (142)
21 2d30_A Cytidine deaminase; pur 71.7 6.1 0.00021 28.2 4.7 57 105-162 32-88 (141)
22 2a8n_A Cytidine and deoxycytid 68.5 4.8 0.00016 28.6 3.6 40 107-147 25-65 (144)
23 2b3j_A TRNA adenosine deaminas 68.0 5.6 0.00019 28.8 3.9 52 107-159 28-80 (159)
24 1wwr_A TRNA adenosine deaminas 67.7 5.6 0.00019 29.3 3.9 53 107-160 44-97 (171)
25 2w4l_A DCMP deaminse, deoxycyt 67.1 4.4 0.00015 30.1 3.2 39 106-144 32-90 (178)
26 2nx8_A TRNA-specific adenosine 65.8 6.4 0.00022 29.2 3.9 40 107-147 37-77 (179)
27 3r2n_A Cytidine deaminase; str 63.3 8.6 0.00029 27.3 4.0 55 106-161 31-85 (138)
28 3mpz_A Cytidine deaminase; ssg 60.9 9.9 0.00034 27.4 4.0 56 105-161 45-100 (150)
29 1z3a_A TRNA-specific adenosine 57.7 9 0.00031 28.0 3.4 41 107-148 30-71 (168)
30 3dh1_A TRNA-specific adenosine 56.9 12 0.00039 28.1 3.9 39 108-147 48-87 (189)
31 1wkq_A Guanine deaminase; doma 56.8 10 0.00035 27.6 3.6 40 108-148 34-74 (164)
32 2g84_A Cytidine and deoxycytid 55.8 23 0.00077 26.6 5.5 40 108-147 50-91 (197)
33 1p6o_A Cytosine deaminase; hyd 55.6 6.4 0.00022 28.6 2.3 40 107-146 35-76 (161)
34 3b8f_A Putative blasticidin S 54.1 11 0.00037 26.8 3.2 54 107-161 24-77 (142)
35 3dmo_A Cytidine deaminase; str 53.9 18 0.00061 25.6 4.3 57 105-162 31-89 (138)
36 3tue_A Tryparedoxin peroxidase 45.9 67 0.0023 24.4 6.8 50 101-152 141-190 (219)
37 2zd1_B P51 RT; P51/P66, hetero 45.8 58 0.002 27.3 7.0 80 87-171 321-405 (428)
38 3oj6_A Blasticidin-S deaminase 42.6 77 0.0026 22.9 6.3 53 106-161 51-103 (158)
39 3sbc_A Peroxiredoxin TSA1; alp 40.5 77 0.0026 24.0 6.4 49 102-152 138-186 (216)
40 1rw3_A POL polyprotein; RNA an 37.3 9.5 0.00032 32.3 0.8 77 90-172 346-428 (455)
41 1ctt_A Cytidine deaminase; hyd 36.1 41 0.0014 26.9 4.3 58 105-162 208-266 (294)
42 2hvw_A Deoxycytidylate deamina 35.5 36 0.0012 25.2 3.7 39 107-146 62-116 (184)
43 3mxt_A Pantothenate synthetase 31.8 77 0.0026 25.2 5.2 69 110-201 176-244 (285)
44 3gg7_A Uncharacterized metallo 31.4 22 0.00076 27.7 2.0 22 144-165 179-200 (254)
45 4g84_A Histidine--tRNA ligase, 27.8 2.6E+02 0.0089 23.1 8.7 65 105-170 107-179 (464)
46 1vq2_A DCMP deaminase, deoxycy 24.1 60 0.002 24.0 3.2 14 133-146 102-115 (193)
47 2hxv_A Diaminohydroxyphosphori 22.0 57 0.0019 26.7 2.9 34 108-145 38-71 (360)
48 2b3z_A Riboflavin biosynthesis 21.8 66 0.0023 26.5 3.3 34 108-145 38-71 (373)
49 3msh_A Hepatitis B virus X-int 20.0 2E+02 0.0068 19.0 7.0 54 105-165 16-74 (99)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.84 E-value=3e-20 Score=136.75 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=98.9
Q ss_pred ceEEEecceeeecCCeeeEEEEEeCCC-CcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHHHHHH
Q 039849 90 WYEANVDAAIRHSNWIAGLGVVIRDSK-GKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKEVVDL 168 (202)
Q Consensus 90 ~~K~n~Das~~~~~~~~g~G~vird~~-g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~vv~~ 168 (202)
.+++|||||+.++++.+|+|+|++++. |..+......++ ..+++.||+.|++.||+++.++|..+|.|+|||+.|++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 379999999999999999999999987 666655555554 679999999999999999999999999999999999999
Q ss_pred HhcCCC-CcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 169 ARNRKG-CKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 169 l~~~~~-~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
+++... ....+..++.+|+.++.+|..++|.||+
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~ 116 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVP 116 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 998743 3345889999999999999999999995
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.84 E-value=3.9e-20 Score=135.68 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=101.0
Q ss_pred CceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcc----cEEEEechHH
Q 039849 89 GWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCL----PMIIELDSKE 164 (202)
Q Consensus 89 ~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~----~v~~esDs~~ 164 (202)
..+++|||||+.++++.+|+|+++++++|..+......++ ..+++.||+.|++.||+.+.+.+.+ +|.|+|||+.
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 3589999999999999999999999999998766666665 4699999999999999999999999 9999999999
Q ss_pred HHHHHhcCCCC-cchHHHHHHHHHHH-hhcCCceEEEeeC
Q 039849 165 VVDLARNRKGC-KSEVFWTVVAIQAS-LKSLNRVQIQHVS 202 (202)
Q Consensus 165 vv~~l~~~~~~-~s~~~~ii~~i~~l-~~~f~~~~~~~V~ 202 (202)
|++.+++.... ...+..++.+++.+ +.+|..++|.||+
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~ 120 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP 120 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 99999987543 34688999999999 9999999999995
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.82 E-value=2.6e-19 Score=133.19 Aligned_cols=111 Identities=12% Similarity=-0.016 Sum_probs=95.6
Q ss_pred ceEEEecceee-ecCCeeeE-EEEEeCCCCcEEEeeeeecC---ccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHH
Q 039849 90 WYEANVDAAIR-HSNWIAGL-GVVIRDSKGKFVAVAIQRAI---YKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKE 164 (202)
Q Consensus 90 ~~K~n~Das~~-~~~~~~g~-G~vird~~g~~~~~~~~~~~---~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~ 164 (202)
++++|||||+. ++++.+|+ |+|+++ .|..+........ ...+++.||+.|++.||+.+.++|.++|.|+|||+.
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~ 79 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQL 79 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHH
Confidence 57899999999 78899996 999999 8887754443333 367999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-cchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 165 VVDLARNRKGC-KSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 165 vv~~l~~~~~~-~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
|++.+++.... ...+..++++++.++++| .+.|.||+
T Consensus 80 vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~ 117 (149)
T 2ehg_A 80 VIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVP 117 (149)
T ss_dssp HHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECC
T ss_pred HHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcC
Confidence 99999987432 235899999999999999 69999985
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.77 E-value=4.6e-18 Score=127.27 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=94.1
Q ss_pred CCCCCceEEEecceeeecCC---eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 85 PPSSGWYEANVDAAIRHSNW---IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 85 ~P~~~~~K~n~Das~~~~~~---~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
+|+.++++++||||+.++++ .+|+|+++++..+..+. ..+.+..+++.||+.|++.||+.+.+.+..+|.|+||
T Consensus 2 ~~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~---~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tD 78 (154)
T 2qkb_A 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG---IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTN 78 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEE---EECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEE---eecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 57789999999999998764 48999999986554332 3444467999999999999999999999999999999
Q ss_pred hHHHHHHHhcC------------CCCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 162 SKEVVDLARNR------------KGCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 162 s~~vv~~l~~~------------~~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
|+.|++.|++- ...+.....++.+|..++..+. +.|.||+
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~-v~~~~V~ 130 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD-IQWMHVP 130 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCE-EEEEECC
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCc-eEEEEcc
Confidence 99999999871 1123456789999999999875 9999985
No 5
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.71 E-value=5.4e-17 Score=119.62 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=80.2
Q ss_pred cCCCCCceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechH
Q 039849 84 MPPSSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSK 163 (202)
Q Consensus 84 ~~P~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~ 163 (202)
.||+.++++++||||+.++++.+|+|+|++ ..|..+..+. .+. ..|++.||++|++.||+.+.+.+. +|.|+|||+
T Consensus 5 ~~~~~~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~~~~-~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~ 80 (142)
T 1zbf_A 5 AKEEIIWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLFERE-PIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQ 80 (142)
T ss_dssp ---CCCSSSEEEEEEECSSSEEEEEEEEET-TTCCEEEECC-CEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCH
T ss_pred CCCCCCeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEEEec-ccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehH
Confidence 467789999999999999999999999999 6787665432 233 468999999999999999999999 999999999
Q ss_pred HHHHHHhcCCC-----CcchHHHHHHHHHHH
Q 039849 164 EVVDLARNRKG-----CKSEVFWTVVAIQAS 189 (202)
Q Consensus 164 ~vv~~l~~~~~-----~~s~~~~ii~~i~~l 189 (202)
.|++.+++... .+.....+.+.+..+
T Consensus 81 ~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~ 111 (142)
T 1zbf_A 81 TAIKWVKDKKAKSTLVRNEETALIWKLVDEA 111 (142)
T ss_dssp HHHHHHHHTCCCCCCCCSTTTHHHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCCCcccHHHHHHHHHH
Confidence 99999998752 122345555554443
No 6
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.70 E-value=5.3e-17 Score=122.98 Aligned_cols=113 Identities=15% Similarity=0.027 Sum_probs=87.5
Q ss_pred cCCCCCceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechH
Q 039849 84 MPPSSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSK 163 (202)
Q Consensus 84 ~~P~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~ 163 (202)
.||+++.++++||||+.++++.+|+|+|+++..+.....+ .. ...+++.||+.|++.||+.+.+. .+|.|+|||+
T Consensus 2 ~p~~m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~--~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~ 76 (166)
T 1ril_A 2 NPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSG--GE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSH 76 (166)
T ss_dssp ----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECC--EE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCH
T ss_pred CCCCCccEEEEECccccCCCCCEEEEEEEEECCEEEEEec--CC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChH
Confidence 4788899999999999999999999999998655433222 22 24689999999999999998765 4999999999
Q ss_pred HHHHHHhcC---------C----CCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 164 EVVDLARNR---------K----GCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 164 ~vv~~l~~~---------~----~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
.|++.|++. . ..+.....++.++..++..+ .+.|.||+
T Consensus 77 ~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~ 127 (166)
T 1ril_A 77 YLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVK 127 (166)
T ss_dssp HHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCC
T ss_pred HHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEee
Confidence 999999982 1 11233567899999999875 78888884
No 7
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.69 E-value=3.3e-16 Score=116.69 Aligned_cols=109 Identities=20% Similarity=0.146 Sum_probs=88.3
Q ss_pred cCCCCCceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechH
Q 039849 84 MPPSSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSK 163 (202)
Q Consensus 84 ~~P~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~ 163 (202)
..|+.|.+++++|||+.++++.+|+|+|+++..+..+. . ...+++.||+.|++.||+.+ + .+|.|.|||+
T Consensus 6 ~~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~-----~-~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~ 75 (150)
T 3qio_A 6 KEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVT-----L-TDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQ 75 (150)
T ss_dssp SSCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEE-----E-SSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCH
T ss_pred cCCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEe-----C-CCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcH
Confidence 46888999999999999999999999999986544331 2 35799999999999999985 3 8999999999
Q ss_pred HHHHHHhcC------------CCCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 164 EVVDLARNR------------KGCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 164 ~vv~~l~~~------------~~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
.|++.+++- ...+.....++.++..++.++..+.|.||+
T Consensus 76 ~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~ 126 (150)
T 3qio_A 76 YALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVP 126 (150)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEcc
Confidence 999999862 112334578888988888889999999995
No 8
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.64 E-value=2e-15 Score=112.97 Aligned_cols=107 Identities=14% Similarity=0.038 Sum_probs=85.8
Q ss_pred ceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHHHHHHH
Q 039849 90 WYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKEVVDLA 169 (202)
Q Consensus 90 ~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~vv~~l 169 (202)
.++++||||+.++++.+|+|+++++..+.....+ .. ...+++.||+.|++.||+.+.+. .+|.|+|||+.|++.|
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~--~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i 78 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSA--GY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGI 78 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEE--EE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEec--CC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHH
Confidence 5899999999999999999999998665433322 22 24689999999999999999764 8999999999999999
Q ss_pred hc--------CC----CCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 170 RN--------RK----GCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 170 ~~--------~~----~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
++ .. ..+.....++.++..++..+ .+.|.||+
T Consensus 79 ~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~ 122 (155)
T 1jl1_A 79 TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVK 122 (155)
T ss_dssp HTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTC-EEEEEECC
T ss_pred HHHHHHHhhcccccccCCccCCHHHHHHHHHHHccC-ceEEEEcC
Confidence 97 21 12333477899999988864 89999985
No 9
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.64 E-value=1.8e-15 Score=112.04 Aligned_cols=108 Identities=15% Similarity=0.012 Sum_probs=86.9
Q ss_pred CceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHHHHHH
Q 039849 89 GWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKEVVDL 168 (202)
Q Consensus 89 ~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~vv~~ 168 (202)
..++++||||+.++++.+|+|+++++..+.. ......+ ..+++.||+.|++.||+.+.+ ..+|.|+|||+.|++.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~--~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~ 77 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRK--EISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNA 77 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEE--EEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeE--EeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHH
Confidence 3589999999999999999999999864332 2233333 468999999999999999976 5899999999999999
Q ss_pred HhcC-------------CCCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 169 ARNR-------------KGCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 169 l~~~-------------~~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
+++. ...+.....++.++..++..+ .+.|.||+
T Consensus 78 i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~ 123 (146)
T 3h08_A 78 MNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVK 123 (146)
T ss_dssp HHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECC
T ss_pred HHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcC
Confidence 9882 222345688999999999887 58999985
No 10
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.63 E-value=4.5e-15 Score=111.41 Aligned_cols=108 Identities=10% Similarity=-0.026 Sum_probs=85.7
Q ss_pred CceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHHHHHH
Q 039849 89 GWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKEVVDL 168 (202)
Q Consensus 89 ~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~vv~~ 168 (202)
..++++||||+.++++.+|+|+|+++...... .....+ ..+++.||+.|++.||+.+.+. .+|.|+|||+.|++.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~--~~~~~~-~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~ 79 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKE--MSDGFS-LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQG 79 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEE--EEEEEE-EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEE--EecCcC-CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHH
Confidence 45899999999999999999999998543222 222332 4689999999999999998654 899999999999999
Q ss_pred Hhc--------CC----CCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 169 ARN--------RK----GCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 169 l~~--------~~----~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
|++ .. ..+.....++.++..++..+ .+.|.||+
T Consensus 80 i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~ 124 (158)
T 2e4l_A 80 IMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLH-QIDWRWVK 124 (158)
T ss_dssp HHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTS-EEEEEECC
T ss_pred HHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccC-cEEEEEcc
Confidence 988 32 12344678889999998875 89999985
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.60 E-value=4.9e-14 Score=106.43 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=90.5
Q ss_pred CcccCCCCCceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEe
Q 039849 81 QAWMPPSSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIEL 160 (202)
Q Consensus 81 ~~W~~P~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~es 160 (202)
....|.+...+++++|||+.++++.+|+|+++++. |..+... ......+++.||+.|++.||+.+ ...+|.|.|
T Consensus 14 l~~~P~~~~~i~iytDGs~~~npG~~g~G~vi~~~-~~~~~~~--~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~t 87 (165)
T 3p1g_A 14 LTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTE-TEVIWAR--ALPAGTSAQRAELIALTQALKMA---EGKKLNVYT 87 (165)
T ss_dssp CBSSCCTTCSEEEEEEEEEEEETTEEEEEEEEECS-SCEEEEE--EECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEE
T ss_pred CCCCCCCCCCEEEEEEcccCCCCCceEEEEEEEEC-CEEEEEe--cCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEE
Confidence 34455665679999999999999999999999874 5544322 34456799999999999999998 368999999
Q ss_pred chHHHHHHHhcCC-CCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 161 DSKEVVDLARNRK-GCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 161 Ds~~vv~~l~~~~-~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
||+.+++.+.... ..+.....++.++...+..+..+.|.||+
T Consensus 88 DS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVk 130 (165)
T 3p1g_A 88 DSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCP 130 (165)
T ss_dssp CCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECC
T ss_pred chHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEec
Confidence 9999999985322 22334567788887766678899999996
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.53 E-value=3.5e-13 Score=101.68 Aligned_cols=112 Identities=21% Similarity=0.097 Sum_probs=87.0
Q ss_pred CceEEEecceeeecCCe-----eeEEEEEeCCCC--cEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 89 GWYEANVDAAIRHSNWI-----AGLGVVIRDSKG--KFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 89 ~~~K~n~Das~~~~~~~-----~g~G~vird~~g--~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
..+.++||||+.++++. +|+|++++.... ++...... ..+..+.+.||+.||..||+.+...+ .+|.|.||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~-~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TD 83 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSI-PLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITD 83 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEE-EESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEES
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccC-CchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 34679999999998774 999999985433 33333322 23456889999999999999998877 47999999
Q ss_pred hHHHHHHHhc------------CCCCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 162 SKEVVDLARN------------RKGCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 162 s~~vv~~l~~------------~~~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
|+.|++.+++ ....+-....++.++..++..+..+.|.|||
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~Vk 136 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEK 136 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECC
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999974 1122334578899999999989999999996
No 13
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.52 E-value=9.8e-14 Score=100.64 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=68.0
Q ss_pred CceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHHHHHH
Q 039849 89 GWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKEVVDL 168 (202)
Q Consensus 89 ~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~vv~~ 168 (202)
....++||||+.++++.+|+|+|+++ .|..+... ..+. ..+++.||++|++.||+.+.+.+.+ |.|.|||+.|++.
T Consensus 4 ~~~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~w 79 (134)
T 4htu_A 4 IWESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKW 79 (134)
T ss_dssp CSSSEEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHH
T ss_pred cceEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHH
Confidence 45679999999999999999989988 66655443 2333 5799999999999999999998876 8999999999999
Q ss_pred HhcC
Q 039849 169 ARNR 172 (202)
Q Consensus 169 l~~~ 172 (202)
+++.
T Consensus 80 i~~~ 83 (134)
T 4htu_A 80 VKDK 83 (134)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9864
No 14
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.46 E-value=3.4e-14 Score=105.38 Aligned_cols=109 Identities=12% Similarity=0.004 Sum_probs=77.6
Q ss_pred CCCceEEEecceeeecCCeeeEEEEEeCCCCcEEE-ee-eeecCc--cCCHHHHHHHHHHHHHHHHHHCCcccEEEEech
Q 039849 87 SSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVA-VA-IQRAIY--KGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDS 162 (202)
Q Consensus 87 ~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~-~~-~~~~~~--~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs 162 (202)
|.+.++++||||+.+ +.+|+|+++++ +|.... .+ ....+. ..+++.||+.|++.||+.+.+.+. +|.|.|||
T Consensus 3 ~~~~i~iytDGs~~~--g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS 78 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVN--GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDY 78 (147)
T ss_dssp TTSCCEEECCCCCBT--TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCC
T ss_pred CCCeEEEEECCCCCC--CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECc
Confidence 457899999999987 89999999998 555422 11 111122 358999999999999999999998 99999999
Q ss_pred HHHHHHHhcCCCCcch-HHHHHHHHHHHhhcCCceEEEeeC
Q 039849 163 KEVVDLARNRKGCKSE-VFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 163 ~~vv~~l~~~~~~~s~-~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
+.+.+.+.+....... ...+.+.++.+.. .+.|.||+
T Consensus 79 ~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~ 116 (147)
T 2kq2_A 79 AGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVK 116 (147)
T ss_dssp STHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCC
T ss_pred HHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEec
Confidence 9999888775433221 2222233333322 67888874
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.29 E-value=1.6e-11 Score=108.93 Aligned_cols=107 Identities=21% Similarity=0.154 Sum_probs=85.4
Q ss_pred cCCCCCceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechH
Q 039849 84 MPPSSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSK 163 (202)
Q Consensus 84 ~~P~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~ 163 (202)
..|..+.+++++|||+.++++.+|+|+++++.....+ .. ...+++.||+.|++.||+.+ ..+|.|.|||+
T Consensus 433 ~ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~-----~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~ 502 (557)
T 2zd1_A 433 KEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVV-----PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQ 502 (557)
T ss_dssp SSCCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEE-----EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCH
T ss_pred cCCCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEe-----cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChH
Confidence 3456788999999999999999999999985433332 12 35699999999999999998 68999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 164 EVVDLARNRKGCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 164 ~vv~~l~~~~~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
.|++.+++.... ....++.++...+.++..+.|.||+
T Consensus 503 ~vi~~i~~~~~~--~~~~l~~~~~~~l~~~~~v~~~wV~ 539 (557)
T 2zd1_A 503 YALGIIQAQPDK--SESELVNQIIEQLIKKEKVYLAWVP 539 (557)
T ss_dssp HHHHHHTTCCSE--ESSHHHHHHHHHHHHCSEEEEEECC
T ss_pred HHHHHHhcCCcc--CCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 999999985432 1356667777666667789999985
No 16
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.28 E-value=2.6e-11 Score=107.59 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=86.0
Q ss_pred CCCCCceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHH
Q 039849 85 PPSSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKE 164 (202)
Q Consensus 85 ~P~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~ 164 (202)
.|..|.+++++|||+.++++.+|+|+++++..+.. ... ...+++.||+.|++.||+. +..+|.|.|||+.
T Consensus 431 ~p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~-----~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~ 500 (555)
T 1mu2_A 431 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKV-----KKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQY 500 (555)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEE-----EEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHH
T ss_pred CCCCCceEEEEcccccCCCCCceEEEEEEeCCEee-----ccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHH
Confidence 45678899999999999999999999998754331 122 3568999999999999987 6789999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHhhcCCceEEEeeC
Q 039849 165 VVDLARNRKGCKSEVFWTVVAIQASLKSLNRVQIQHVS 202 (202)
Q Consensus 165 vv~~l~~~~~~~s~~~~ii~~i~~l~~~f~~~~~~~V~ 202 (202)
|++.+++-.. .....+..++..++..+..+.+.||+
T Consensus 501 v~~~i~~~~~--~~~~~l~~~~~~~~~~~~~v~~~wV~ 536 (555)
T 1mu2_A 501 VMGIVASQPT--ESESKIVNQIIEEMIKKEAIYVAWVP 536 (555)
T ss_dssp HHHHHHTCCS--EESCHHHHHHHHHHHHCSEEEEEECC
T ss_pred HHHHHhcccc--cccHHHHHHHHHHhccCCcEEEEEEE
Confidence 9999997432 23456777887777778899999985
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=88.33 E-value=0.86 Score=32.43 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=42.0
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
...+|+++++.+|+++.+.............||..|+..|... -...+..+.+.+|
T Consensus 23 ~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~ 78 (136)
T 1uwz_A 23 KFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAAD 78 (136)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEES
T ss_pred CCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeC
Confidence 4468999999999988655544433445689999999999876 4456788888876
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=85.88 E-value=1.1 Score=32.27 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=41.5
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
...+|.++++.+|+++.+...-.........||..|+..|... -...+..+.+.+|
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~ 90 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSD 90 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEES
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeC
Confidence 4568999999999988655533333334588999999999865 4556788888877
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=77.90 E-value=3.6 Score=28.86 Aligned_cols=54 Identities=6% Similarity=-0.137 Sum_probs=39.3
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
...+|+++++.+|+++.+...- .......||..|+..|... -...+..+.+.+|
T Consensus 26 ~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~ 79 (130)
T 2z3g_A 26 DYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGN 79 (130)
T ss_dssp SSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEEEC
Confidence 3568999999999988655433 3345689999999998864 2345777777776
No 20
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=75.70 E-value=4.6 Score=28.80 Aligned_cols=57 Identities=16% Similarity=0.025 Sum_probs=39.9
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
....|+++++.+|++..+..--.......+.||-.|+..+...-....+..+.+-+|
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~ 87 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGD 87 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEES
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeC
Confidence 456899999999998876653333333568899999998876432222777888776
No 21
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=71.73 E-value=6.1 Score=28.18 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=40.7
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEech
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDS 162 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs 162 (202)
...+|+++++.+|+++.+..--.........||..|+..|... -...+..|.+-+|.
T Consensus 32 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 32 KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 3468999999999988766543333334588999999988864 23457788887763
No 22
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=68.50 E-value=4.8 Score=28.61 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=26.1
Q ss_pred eEEEEEeCCCCcEEEeeeeec-CccCCHHHHHHHHHHHHHHH
Q 039849 107 GLGVVIRDSKGKFVAVAIQRA-IYKGNVAYVEAKAVTLGIQV 147 (202)
Q Consensus 107 g~G~vird~~g~~~~~~~~~~-~~~~~~~~AE~~al~~al~~ 147 (202)
-+|+||.+ +|+++..+.... .......+||..|+..+.+.
T Consensus 25 ~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 65 (144)
T 2a8n_A 25 PIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEA 65 (144)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHH
Confidence 46777776 788875544322 12233578999999998764
No 23
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=67.99 E-value=5.6 Score=28.83 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=29.7
Q ss_pred eEEEEEeCCCCcEEEeeeeec-CccCCHHHHHHHHHHHHHHHHHHCCcccEEEE
Q 039849 107 GLGVVIRDSKGKFVAVAIQRA-IYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIE 159 (202)
Q Consensus 107 g~G~vird~~g~~~~~~~~~~-~~~~~~~~AE~~al~~al~~a~~~~~~~v~~e 159 (202)
-+|+||.+ +|+++..+.... .......+||..|+..|.+..-...+....+.
T Consensus 28 pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly 80 (159)
T 2b3j_A 28 PIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLY 80 (159)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEE
Confidence 35666666 788775443221 11234579999999988765333333333333
No 24
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=67.69 E-value=5.6 Score=29.30 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=32.2
Q ss_pred eEEEEEeCCCCcEEEeeeee-cCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEe
Q 039849 107 GLGVVIRDSKGKFVAVAIQR-AIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIEL 160 (202)
Q Consensus 107 g~G~vird~~g~~~~~~~~~-~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~es 160 (202)
.+|+||.+ +|+++..+... ........+||..|+..|.+..-...+....+.+
T Consensus 44 pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 44 PVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 46777776 78887544322 2222335789999999987654333445555553
No 25
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=67.10 E-value=4.4 Score=30.10 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=25.9
Q ss_pred eeEEEEEeCCCCcEEEeeeeecC-cc-----------CCH--------HHHHHHHHHHH
Q 039849 106 AGLGVVIRDSKGKFVAVAIQRAI-YK-----------GNV--------AYVEAKAVTLG 144 (202)
Q Consensus 106 ~g~G~vird~~g~~~~~~~~~~~-~~-----------~~~--------~~AE~~al~~a 144 (202)
.-+|+||.+.+|+++..+....+ ++ .++ .+||..|+..|
T Consensus 32 ~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a 90 (178)
T 2w4l_A 32 SQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNK 90 (178)
T ss_dssp CCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC-
T ss_pred CCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHh
Confidence 34788888888988865543322 11 233 79999999885
No 26
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=65.85 E-value=6.4 Score=29.20 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=25.6
Q ss_pred eEEEEEeCCCCcEEEeeeeec-CccCCHHHHHHHHHHHHHHH
Q 039849 107 GLGVVIRDSKGKFVAVAIQRA-IYKGNVAYVEAKAVTLGIQV 147 (202)
Q Consensus 107 g~G~vird~~g~~~~~~~~~~-~~~~~~~~AE~~al~~al~~ 147 (202)
-+|+||.+ +|+++..+.... .......+||..|+..|-+.
T Consensus 37 pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~ 77 (179)
T 2nx8_A 37 PIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAH 77 (179)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHH
Confidence 35666665 788876554322 12233578999999988764
No 27
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=63.25 E-value=8.6 Score=27.30 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=38.3
Q ss_pred eeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 106 AGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 106 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
..+|++++..+|+++.+...-.........||-.|+..|...- ...+..|.+-+|
T Consensus 31 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~ 85 (138)
T 3r2n_A 31 FPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDG 85 (138)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECT
T ss_pred CcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcC
Confidence 4678889999999887665443333456789999999987542 345666666654
No 28
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=60.93 E-value=9.9 Score=27.41 Aligned_cols=56 Identities=11% Similarity=-0.101 Sum_probs=39.7
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
...+|++++..+|+++.+..--........-||-.|+..|... -...+..|.+-+|
T Consensus 45 ~F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~ 100 (150)
T 3mpz_A 45 GFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGP 100 (150)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CCCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 3468999999999998776544433445678999999988764 2345667777655
No 29
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=57.68 E-value=9 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCcEEEeeeee-cCccCCHHHHHHHHHHHHHHHH
Q 039849 107 GLGVVIRDSKGKFVAVAIQR-AIYKGNVAYVEAKAVTLGIQVT 148 (202)
Q Consensus 107 g~G~vird~~g~~~~~~~~~-~~~~~~~~~AE~~al~~al~~a 148 (202)
-+|+||.+ +|+++..+... ........+||..|+..|-+..
T Consensus 30 pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~ 71 (168)
T 1z3a_A 30 PVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71 (168)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred cEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHHc
Confidence 35666664 78887554332 2222334789999999887653
No 30
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=56.87 E-value=12 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=25.3
Q ss_pred EEEEEeCCCCcEEEeeeeec-CccCCHHHHHHHHHHHHHHH
Q 039849 108 LGVVIRDSKGKFVAVAIQRA-IYKGNVAYVEAKAVTLGIQV 147 (202)
Q Consensus 108 ~G~vird~~g~~~~~~~~~~-~~~~~~~~AE~~al~~al~~ 147 (202)
+|+||.+ +|+++..+.... .......+||..|+..|.+.
T Consensus 48 VGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~ 87 (189)
T 3dh1_A 48 VGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDW 87 (189)
T ss_dssp CEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHH
Confidence 5666665 688876654321 11334679999999998664
No 31
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=56.80 E-value=10 Score=27.63 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=25.1
Q ss_pred EEEEEeCCCCcEEEeeeeecC-ccCCHHHHHHHHHHHHHHHH
Q 039849 108 LGVVIRDSKGKFVAVAIQRAI-YKGNVAYVEAKAVTLGIQVT 148 (202)
Q Consensus 108 ~G~vird~~g~~~~~~~~~~~-~~~~~~~AE~~al~~al~~a 148 (202)
+|+||.+ +|+++..+..... ......+||..|+..|-+..
T Consensus 34 VGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~ 74 (164)
T 1wkq_A 34 FGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVL 74 (164)
T ss_dssp CEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHc
Confidence 5556653 6888765543322 22336789999999887643
No 32
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=55.78 E-value=23 Score=26.55 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=28.0
Q ss_pred EEEEEeCCC-CcEEEeeeeecC-ccCCHHHHHHHHHHHHHHH
Q 039849 108 LGVVIRDSK-GKFVAVAIQRAI-YKGNVAYVEAKAVTLGIQV 147 (202)
Q Consensus 108 ~G~vird~~-g~~~~~~~~~~~-~~~~~~~AE~~al~~al~~ 147 (202)
+|+||.+.+ |+++..+..... ......+||..|+..|-+.
T Consensus 50 vGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 91 (197)
T 2g84_A 50 FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAK 91 (197)
T ss_dssp CEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHH
Confidence 478888766 898876654322 2345679999999987654
No 33
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=55.64 E-value=6.4 Score=28.59 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=26.6
Q ss_pred eEEEEEe-CCCCcEEEeeeeecC-ccCCHHHHHHHHHHHHHH
Q 039849 107 GLGVVIR-DSKGKFVAVAIQRAI-YKGNVAYVEAKAVTLGIQ 146 (202)
Q Consensus 107 g~G~vir-d~~g~~~~~~~~~~~-~~~~~~~AE~~al~~al~ 146 (202)
-+|+||. +.+|+++..+..... ......+||..|+..|.+
T Consensus 35 pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 35 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp CCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 4788888 578998865543221 122347999999988754
No 34
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=54.05 E-value=11 Score=26.79 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=37.3
Q ss_pred eEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 107 GLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 107 g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
.+|+++++.+|+++.+...-.......+.||..|+..+...- ...+..+.+-+|
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~ 77 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLARE 77 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEES
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEec
Confidence 689999999999887665444334456889999999888642 223456666554
No 35
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=53.86 E-value=18 Score=25.63 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=40.3
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHC--CcccEEEEech
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKI--KCLPMIIELDS 162 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~--~~~~v~~esDs 162 (202)
...+|..++..+|++..+..--.......+-||-.|+..|...- .. .+..|.+-+|.
T Consensus 31 ~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G-~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 31 NFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAG-YRPGEFAAIAVVGET 89 (138)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCTTCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcC-CCcccEEEEEEEcCC
Confidence 45689999999999988776444334445789999999887531 22 56777777763
No 36
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=45.90 E-value=67 Score=24.39 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=37.2
Q ss_pred ecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCC
Q 039849 101 HSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIK 152 (202)
Q Consensus 101 ~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~ 152 (202)
...+.+.-|.+|.|.+|.+.......+. ...+..|++-.+.||+.+...|
T Consensus 141 ~~~g~~~R~tFiIDp~g~Ir~~~~~~~~--~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 141 ESQGVAYRGLFIIDPHGMLRQITVNDMP--VGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp TTTTEECEEEEEECTTSBEEEEEEECTT--CCCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCeeEEEEEEECCCCeEEEEEEecCC--CCCCHHHHHHHHHHhhhHHhcC
Confidence 3445666789999999998776544433 2457789999999999987776
No 37
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=45.81 E-value=58 Score=27.27 Aligned_cols=80 Identities=8% Similarity=-0.185 Sum_probs=50.8
Q ss_pred CCCceEEEecceeeecCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHH-HHHHHHHHHH--CC--cccEEEEec
Q 039849 87 SSGWYEANVDAAIRHSNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKA-VTLGIQVTKK--IK--CLPMIIELD 161 (202)
Q Consensus 87 ~~~~~K~n~Das~~~~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~a-l~~al~~a~~--~~--~~~v~~esD 161 (202)
+..-+.+.+|||- .+++|.|+..++|.....+.-.-.......+-|.+| +..||+--.. .| ...+++.||
T Consensus 321 ~~~~~~l~~das~-----~g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td 395 (428)
T 2zd1_B 321 PSKDLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQK 395 (428)
T ss_dssp TTSCCEEEEEEEE-----TTEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCH
T ss_pred CCCCEEEEEecCC-----CCcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccH
Confidence 3344679999873 236688887777664444333333344566778888 9999976543 23 356678899
Q ss_pred hHHHHHHHhc
Q 039849 162 SKEVVDLARN 171 (202)
Q Consensus 162 s~~vv~~l~~ 171 (202)
...+--..+.
T Consensus 396 ~~~~~~~~~~ 405 (428)
T 2zd1_B 396 ETWETWWTEY 405 (428)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9887654443
No 38
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=42.56 E-value=77 Score=22.86 Aligned_cols=53 Identities=6% Similarity=-0.026 Sum_probs=35.5
Q ss_pred eeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEec
Q 039849 106 AGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELD 161 (202)
Q Consensus 106 ~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esD 161 (202)
..+|+.+++.+|+++.+..- ...+..+-||-.|+..|+..- ...+..+.+-++
T Consensus 51 f~VGAAll~~dG~i~tG~NV--En~~~~lCAEr~Ai~~Avs~G-~~~~~ai~vv~~ 103 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNV--YHFNGGPCAELVVLGVAAAAG-ATKLTHIVAIAN 103 (158)
T ss_dssp SCEEEEEEETTSCEEEEECC--CCTTTCCCHHHHHHHHHHHTT-CCCEEEEEEEET
T ss_pred CcEEEEEEeCCCCEEEEEcc--ccCCccccHHHHHHHHHHHhC-CCceEEEEEEeC
Confidence 46899999999998876654 234455789999888887421 234555555554
No 39
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=40.46 E-value=77 Score=24.00 Aligned_cols=49 Identities=24% Similarity=0.130 Sum_probs=37.0
Q ss_pred cCCeeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCC
Q 039849 102 SNWIAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIK 152 (202)
Q Consensus 102 ~~~~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~ 152 (202)
..+.+.-|.+|-|.+|.+......... ...+..|++-++.||+.....|
T Consensus 138 ~~g~~~R~tFiID~~G~Ir~~~v~~~~--~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 138 EEGVALRGLFIIDPKGVIRHITINDLP--VGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp TTTEECEEEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCceeeEEEEECCCCeEEEEEEcCCC--CCCCHHHHHHHHHHhhhHhhcC
Confidence 345556689999999998776544433 2457889999999999987765
No 40
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=37.35 E-value=9.5 Score=32.28 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=47.8
Q ss_pred ceEEEecceeeecCCeeeEEEEEeCCC--CcEEEeeeeecC---ccCCHHHHHHHHHHHHHHHHHH-CCcccEEEEechH
Q 039849 90 WYEANVDAAIRHSNWIAGLGVVIRDSK--GKFVAVAIQRAI---YKGNVAYVEAKAVTLGIQVTKK-IKCLPMIIELDSK 163 (202)
Q Consensus 90 ~~K~n~Das~~~~~~~~g~G~vird~~--g~~~~~~~~~~~---~~~~~~~AE~~al~~al~~a~~-~~~~~v~~esDs~ 163 (202)
-+.+.+|||-. + +.|++....+ +..+.-.++.+. ...+..+.|++|+..|++.... +.-.++.+.||..
T Consensus 346 ~~~l~~DAS~~---~--~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 346 PFELFVDEKQG---Y--AKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp TTSCEEEEEEC---S--SSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred cEEEEEeccCC---c--ceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 35678998642 1 1123333333 334443343332 2346678999999999988765 3347999999997
Q ss_pred HHHHHHhcC
Q 039849 164 EVVDLARNR 172 (202)
Q Consensus 164 ~vv~~l~~~ 172 (202)
+...++++
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 66666654
No 41
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=36.14 E-value=41 Score=26.95 Aligned_cols=58 Identities=9% Similarity=-0.068 Sum_probs=42.2
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHH-HCCcccEEEEech
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTK-KIKCLPMIIELDS 162 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~-~~~~~~v~~esDs 162 (202)
...+|+.+++.+|+++.+...-.......+.||-.|+..+...-. ...+..+.+-+|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 567899999999998877765444455678899999998875321 1346777887764
No 42
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=35.54 E-value=36 Score=25.19 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCcEEEeeeeecC-c---------------cCCHHHHHHHHHHHHHH
Q 039849 107 GLGVVIRDSKGKFVAVAIQRAI-Y---------------KGNVAYVEAKAVTLGIQ 146 (202)
Q Consensus 107 g~G~vird~~g~~~~~~~~~~~-~---------------~~~~~~AE~~al~~al~ 146 (202)
-+|+||.+ +|+++..+..... + .....+||..|+..|.+
T Consensus 62 ~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~ 116 (184)
T 2hvw_A 62 YVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAK 116 (184)
T ss_dssp CCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHH
Confidence 45666665 6887754443322 1 12257999999998864
No 43
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=31.78 E-value=77 Score=25.23 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=45.1
Q ss_pred EEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 039849 110 VVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKEVVDLARNRKGCKSEVFWTVVAIQAS 189 (202)
Q Consensus 110 ~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~s~~~~ii~~i~~l 189 (202)
=.+|+.+|--+.+...+ .+...-.++.+|..+|+.+.+. +..+. .....++..++..
T Consensus 176 PtvRe~DGLA~SSRN~y---Ls~~eR~~A~~L~~aL~~~~~~-----------------~~~G~---~~~~~l~~~~~~~ 232 (285)
T 3mxt_A 176 PIIREEDGLAKSSRNVY---LSKEERKASLAISQSIFLAEKL-----------------VREGE---KNTSKIIQAMKDI 232 (285)
T ss_dssp CCCBCTTSCBCCGGGGG---CCHHHHHHHHHHHHHHHHHHHH-----------------HHTTC---CBHHHHHHHHHHH
T ss_pred CceECCCCCchhhcccc---CCHHHHHHHHHHHHHHHHHHHH-----------------HHcCC---chHHHHHHHHHHH
Confidence 35688888766555443 3456778899999999888532 22222 2355667777777
Q ss_pred hhcCCceEEEee
Q 039849 190 LKSLNRVQIQHV 201 (202)
Q Consensus 190 ~~~f~~~~~~~V 201 (202)
+...+.+.+.|+
T Consensus 233 l~~~~~~~vdY~ 244 (285)
T 3mxt_A 233 LEKEKLIKIDYI 244 (285)
T ss_dssp HHTCTTEEEEEE
T ss_pred HHhCCCCCccEE
Confidence 777677777765
No 44
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=31.42 E-value=22 Score=27.67 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHHHHCCcccEEEEechHHH
Q 039849 144 GIQVTKKIKCLPMIIELDSKEV 165 (202)
Q Consensus 144 al~~a~~~~~~~v~~esDs~~v 165 (202)
..+.+......++.+|||+..+
T Consensus 179 ~~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 179 GAALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp HHHHHHHSCGGGEEECCCTTTS
T ss_pred HHHHHHHcCCCeEEEeCCCCcc
Confidence 3466678899999999999853
No 45
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=27.79 E-value=2.6e+02 Score=23.14 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=42.3
Q ss_pred eeeEEEEEeCCC---C-----cEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCCcccEEEEechHHHHHHHh
Q 039849 105 IAGLGVVIRDSK---G-----KFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIKCLPMIIELDSKEVVDLAR 170 (202)
Q Consensus 105 ~~g~G~vird~~---g-----~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~~~~v~~esDs~~vv~~l~ 170 (202)
..-+|-|+|++. | +|.-.+...+. ..++..||+..+..+.+....+|+..+.++-.+..+++.+-
T Consensus 107 ~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G-~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~~~~~~~ 179 (464)
T 4g84_A 107 RYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG-NFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMF 179 (464)
T ss_dssp EEEEEEEECCCC------CCSEEEEEEEEEES-CCSTTHHHHHHHHHHHHHHHHHTCCCEEEEEEEHHHHHHHH
T ss_pred eEEEecceeccCCccccCccceeeecceeccC-CccchhhHHHHHHHHHHHHHHhCCCCcceeecchhhHHHHH
Confidence 345678888753 1 34444444443 33566667777777888889999998888877666555543
No 46
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=24.08 E-value=60 Score=23.96 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 039849 133 VAYVEAKAVTLGIQ 146 (202)
Q Consensus 133 ~~~AE~~al~~al~ 146 (202)
..+||..|+..|-+
T Consensus 102 ~~HAE~~AI~~a~~ 115 (193)
T 1vq2_A 102 EIHAELNAILFAAE 115 (193)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 35899999998754
No 47
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=22.03 E-value=57 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=22.9
Q ss_pred EEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHH
Q 039849 108 LGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGI 145 (202)
Q Consensus 108 ~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al 145 (202)
+|+||.+ +|+++..+.... ....+||..|+..|-
T Consensus 38 vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a~ 71 (360)
T 2hxv_A 38 VGAVVVK-DGRIIAEGFHPY---FGGPHAERMAIESAR 71 (360)
T ss_dssp CEEEEEE-TTEEEEEEECCS---TTSCCHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHHH
Confidence 4556654 678776654332 235699999999883
No 48
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=21.80 E-value=66 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=23.4
Q ss_pred EEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHH
Q 039849 108 LGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGI 145 (202)
Q Consensus 108 ~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al 145 (202)
+|+||.+ +|+++..+.... ....+||..|+..|-
T Consensus 38 vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a~ 71 (373)
T 2b3z_A 38 VGAVVVK-DGQIVGMGAHLK---YGEAHAEVHAIHMAG 71 (373)
T ss_dssp CEEEEES-SSSEEEEEECCS---TTSCCHHHHHHHHHG
T ss_pred EEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHhh
Confidence 5666665 688887665433 245799999998863
No 49
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=20.05 E-value=2e+02 Score=18.98 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=33.0
Q ss_pred eeeEEEEEeCCCCcEEEeeeeecCccCCHHHHHHHHHHHHHHHHHHCC-----cccEEEEechHHH
Q 039849 105 IAGLGVVIRDSKGKFVAVAIQRAIYKGNVAYVEAKAVTLGIQVTKKIK-----CLPMIIELDSKEV 165 (202)
Q Consensus 105 ~~g~G~vird~~g~~~~~~~~~~~~~~~~~~AE~~al~~al~~a~~~~-----~~~v~~esDs~~v 165 (202)
.+-.|+++-|+.|--+.+.- ..++..|=+...+ .+.|..+. ..-|.+|+|+..+
T Consensus 16 pgvvGvlc~D~qGLcLg~~G-----~~s~~~AG~i~~l--a~~AakL~p~~~~~P~I~LEsDs~~~ 74 (99)
T 3msh_A 16 PSIVGVLCTDSQGLNLGCRG-----TLSDEHAGVISVL--AQQAAKLTSDPTDIPVVCLESDNGNI 74 (99)
T ss_dssp TTEEEEEEECTTCCEEEEEE-----TCCGGGHHHHHHH--HHHHHHTCCCSSCCCCEEEEETTEEE
T ss_pred CCcEEEEEECCCCCcccccC-----CCCcccchHHHHH--HHHHHhcCCCCCCCCEEEEEeCCceE
Confidence 34579999999998776542 2344444443332 23444443 3489999998643
Done!