Query 039851
Match_columns 114
No_of_seqs 115 out of 1019
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03083 MtN3_slv: Sugar efflu 99.9 9E-27 2E-31 149.4 6.9 86 7-93 2-87 (87)
2 KOG1623 Multitransmembrane pro 99.9 1.5E-23 3.2E-28 156.5 7.1 107 2-111 3-109 (243)
3 KOG1623 Multitransmembrane pro 99.8 3.6E-19 7.8E-24 133.0 6.2 87 5-92 125-211 (243)
4 COG4095 Uncharacterized conser 99.6 3.3E-14 7.1E-19 90.9 9.0 86 1-90 1-86 (89)
5 PF04193 PQ-loop: PQ loop repe 98.5 4.3E-07 9.4E-12 54.1 6.4 53 11-63 5-57 (61)
6 TIGR00951 2A43 Lysosomal Cysti 97.6 0.00062 1.3E-08 50.6 8.3 50 5-57 4-53 (220)
7 smart00679 CTNS Repeated motif 96.1 0.0063 1.4E-07 31.4 2.4 26 22-47 2-27 (32)
8 PF03650 MPC: Uncharacterised 95.7 0.0052 1.1E-07 41.7 1.3 60 33-92 39-99 (119)
9 TIGR00951 2A43 Lysosomal Cysti 95.6 0.12 2.6E-06 38.4 8.5 81 8-88 139-219 (220)
10 KOG1589 Uncharacterized conser 94.3 0.02 4.4E-07 38.3 1.0 59 33-91 43-102 (118)
11 PHA02246 hypothetical protein 94.2 1.4 3E-05 31.6 10.2 64 13-76 114-177 (192)
12 KOG2913 Predicted membrane pro 93.8 0.5 1.1E-05 36.1 7.9 57 7-63 8-64 (260)
13 KOG3211 Predicted endoplasmic 88.1 2 4.3E-05 32.1 5.8 73 19-91 153-225 (230)
14 PF10688 Imp-YgjV: Bacterial i 86.4 3.7 8.1E-05 29.0 6.4 38 45-83 118-155 (163)
15 PF07578 LAB_N: Lipid A Biosyn 80.2 5.7 0.00012 24.7 4.5 51 24-77 14-65 (72)
16 KOG2913 Predicted membrane pro 77.1 2.2 4.7E-05 32.6 2.5 42 10-51 168-209 (260)
17 KOG3211 Predicted endoplasmic 76.1 17 0.00036 27.3 6.7 54 6-62 32-85 (230)
18 PF05602 CLPTM1: Cleft lip and 73.0 9 0.0002 31.1 5.2 72 9-80 303-374 (438)
19 COG3952 Predicted membrane pro 64.1 17 0.00036 24.4 4.1 54 34-89 51-105 (113)
20 PRK11387 S-methylmethionine tr 53.1 1.2E+02 0.0026 24.4 8.9 24 72-95 439-462 (471)
21 PHA02246 hypothetical protein 49.5 97 0.0021 22.3 7.4 80 1-84 1-81 (192)
22 TIGR00341 conserved hypothetic 47.4 19 0.00042 28.4 2.7 49 43-92 245-293 (325)
23 PF05545 FixQ: Cbb3-type cytoc 47.1 50 0.0011 18.3 4.1 36 3-38 2-37 (49)
24 KOG3339 Predicted glycosyltran 45.3 11 0.00025 27.8 1.1 56 29-86 99-154 (211)
25 PF06946 Phage_holin_5: Phage 44.2 88 0.0019 20.3 7.3 62 29-92 24-85 (93)
26 PF01102 Glycophorin_A: Glycop 43.8 45 0.00097 22.7 3.8 35 4-41 67-101 (122)
27 KOG4314 Predicted carbohydrate 42.3 84 0.0018 23.8 5.3 51 4-54 131-182 (290)
28 COG0004 AmtB Ammonia permease 40.1 63 0.0014 26.4 4.7 53 5-59 5-59 (409)
29 PRK10580 proY putative proline 39.2 2E+02 0.0043 23.0 9.4 26 8-33 360-385 (457)
30 PRK10655 potE putrescine trans 38.6 2E+02 0.0043 22.8 8.2 24 11-34 354-377 (438)
31 PF01372 Melittin: Melittin; 35.4 61 0.0013 16.0 3.0 15 21-35 10-24 (26)
32 KOG1590 Uncharacterized conser 26.9 1.1E+02 0.0024 21.0 3.4 65 23-89 39-104 (132)
33 PF07857 DUF1632: CEO family ( 25.6 1.8E+02 0.004 22.1 4.9 66 5-71 180-254 (254)
34 PF06930 DUF1282: Protein of u 23.7 1.1E+02 0.0023 21.3 3.1 30 20-49 2-31 (170)
35 TIGR00905 2A0302 transporter, 23.4 4E+02 0.0086 21.4 8.2 22 13-34 364-385 (473)
36 PF14936 p53-inducible11: Tumo 22.6 1.3E+02 0.0027 21.9 3.2 39 70-111 94-133 (179)
37 PRK03427 cell division protein 22.5 1.1E+02 0.0024 24.4 3.2 33 1-36 2-34 (333)
38 PRK05771 V-type ATP synthase s 22.2 5E+02 0.011 22.1 7.6 52 20-82 325-376 (646)
39 TIGR03063 srtB_target sortase 21.9 1.3E+02 0.0028 15.3 2.5 24 34-57 3-26 (29)
40 PF08660 Alg14: Oligosaccharid 21.8 48 0.001 23.4 1.0 58 27-86 57-114 (170)
41 PF06363 Picorna_P3A: Picornav 20.7 2.6E+02 0.0056 18.3 4.1 30 9-38 70-99 (100)
42 COG1808 Predicted membrane pro 20.3 2.7E+02 0.0059 22.2 5.0 52 40-92 153-204 (334)
No 1
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.94 E-value=9e-27 Score=149.38 Aligned_cols=86 Identities=24% Similarity=0.607 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHh
Q 039851 7 IFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFL 86 (114)
Q Consensus 7 i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~ 86 (114)
++|++|.+.++++++||+++++|++|+||+|++|+.|+++.++||.+|+.||++++| ++++.+|.+|..++.+|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d-~~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILIND-WPIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCC-eeEEeeHHHHHHHHHHHHhheE
Confidence 478999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hccCCCc
Q 039851 87 IFAPPMM 93 (114)
Q Consensus 87 ~y~~~~~ 93 (114)
+|+++||
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9999875
No 2
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.89 E-value=1.5e-23 Score=156.53 Aligned_cols=107 Identities=35% Similarity=0.671 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHH
Q 039851 2 ASLNFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIY 81 (114)
Q Consensus 2 ~~~~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~ 81 (114)
.....++|..|++.++++|++|+|+++||+|+||+|++|+.||+++++||.+|+.||.+++|+..++..|.+|+++++.|
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Y 82 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVY 82 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998884499999999999999999
Q ss_pred HHHHhhccCCCchhHHHHHHHHHHHHHhhh
Q 039851 82 VIIFLIFAPPMMRGRTAVLAGVCDVVFPGT 111 (114)
Q Consensus 82 l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
+..|+.|+++||.. ++....++.++++
T Consensus 83 i~~f~~ya~~k~~~---~~~~~~~~~~~~~ 109 (243)
T KOG1623|consen 83 ISIFLYYAPKKKTV---KIVLALVLGVIGL 109 (243)
T ss_pred HHHHheecCchhee---EeeehHHHHHHHH
Confidence 99999999988732 2233444444443
No 3
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.78 E-value=3.6e-19 Score=133.02 Aligned_cols=87 Identities=17% Similarity=0.356 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHH
Q 039851 5 NFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVII 84 (114)
Q Consensus 5 ~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~ 84 (114)
.+.+|.+|.++++++|.||+..+++++|+||+|.+|+....+.++++..|+.||++.+| ++|.+||.+|..++..|+.+
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D-~~IaipN~iG~~l~~~QL~L 203 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKD-FFIAIPNVLGFLLGLIQLIL 203 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcC-eEEEcccHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HhhccCCC
Q 039851 85 FLIFAPPM 92 (114)
Q Consensus 85 ~~~y~~~~ 92 (114)
|++|++++
T Consensus 204 y~~y~~~~ 211 (243)
T KOG1623|consen 204 YFKYPKTT 211 (243)
T ss_pred hhhcCCCc
Confidence 99998766
No 4
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.3e-14 Score=90.95 Aligned_cols=86 Identities=15% Similarity=0.282 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHH
Q 039851 1 MASLNFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEII 80 (114)
Q Consensus 1 m~~~~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~ 80 (114)
|+...+.+|..|.+.+... -+||..+++|+||++++|+..++.....+++|+.||++.+| .|+...|.++..++..
T Consensus 1 m~~~~~viG~ia~ilttf~---flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~-lPii~aN~i~~il~li 76 (89)
T COG4095 1 MDFFIEVIGTIAGILTTFA---FLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILIND-LPIIIANIISFILSLI 76 (89)
T ss_pred CcchhhhHHHHHHHHHHHH---HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHcc-CcchhHHHHHHHHHHH
Confidence 6677888888888887765 59999999999999999999999999999999999999999 9999999999999998
Q ss_pred HHHHHhhccC
Q 039851 81 YVIIFLIFAP 90 (114)
Q Consensus 81 ~l~~~~~y~~ 90 (114)
-+....+|..
T Consensus 77 Il~~kI~~~~ 86 (89)
T COG4095 77 ILFYKIKYIL 86 (89)
T ss_pred HHHHHHHHHH
Confidence 8877776653
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=98.53 E-value=4.3e-07 Score=54.07 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCC
Q 039851 11 LGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPN 63 (114)
Q Consensus 11 ~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d 63 (114)
++.+..++...+.+||+.+.+|+||++++|...+.....++.+|+.|++..++
T Consensus 5 ~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~ 57 (61)
T PF04193_consen 5 LGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNY 57 (61)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444455556889999999999999999999999999999999999999876
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=97.56 E-value=0.00062 Score=50.56 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHH
Q 039851 5 NFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWY 57 (114)
Q Consensus 5 ~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~Y 57 (114)
..++|+...+.. ..+-.||+.+..|+||++++|+..+..-..+...|..|
T Consensus 4 S~~lG~~~~~~~---~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAW---SISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHH---HHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 445555554444 45789999999999999999999999999999999999
No 7
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=96.10 E-value=0.0063 Score=31.37 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHhcCCCcccchhHHHH
Q 039851 22 SPAKTFWHIVQRRSTEEFESIPYISK 47 (114)
Q Consensus 22 spl~~~~~I~k~ks~~~~s~~p~~~~ 47 (114)
+-+||+.+.+|+||++++|+..+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 56899999999999999986665543
No 8
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=95.70 E-value=0.0052 Score=41.69 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=53.0
Q ss_pred hcCCCcccchhHHHHHHHHHHHHHHHhccC-CcceEEeehHHHHHHHHHHHHHHhhccCCC
Q 039851 33 RRSTEEFESIPYISKLLNAYFWVWYGIVKP-NSVLVASVNGFGAALEIIYVIIFLIFAPPM 92 (114)
Q Consensus 33 ~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~-d~~~i~~~N~~g~~l~~~~l~~~~~y~~~~ 92 (114)
+|..|.+|..+-.+..+-+.+|..|++.+. .++.++.+|..-...+.+|+.=+..|...+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 99 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQ 99 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 589999999999999999999999999663 348899999999999999999988887544
No 9
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.63 E-value=0.12 Score=38.37 Aligned_cols=81 Identities=7% Similarity=0.099 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHhh
Q 039851 8 FGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLI 87 (114)
Q Consensus 8 ~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~~ 87 (114)
+..+..+--.....+-+||.+.-.|+|||++.|......-+..+..=..-....++|...+.....+..++...+.=.+.
T Consensus 139 l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~ 218 (220)
T TIGR00951 139 VTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQVFF 218 (220)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333444455889999999999999999998888777775544444554444477888888888888877765554
Q ss_pred c
Q 039851 88 F 88 (114)
Q Consensus 88 y 88 (114)
|
T Consensus 219 y 219 (220)
T TIGR00951 219 Y 219 (220)
T ss_pred c
Confidence 4
No 10
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=0.02 Score=38.29 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=51.6
Q ss_pred hcCCCcccchhHHHHHHHHHHHHHHHhcc-CCcceEEeehHHHHHHHHHHHHHHhhccCC
Q 039851 33 RRSTEEFESIPYISKLLNAYFWVWYGIVK-PNSVLVASVNGFGAALEIIYVIIFLIFAPP 91 (114)
Q Consensus 33 ~ks~~~~s~~p~~~~~~n~~lW~~YG~l~-~d~~~i~~~N~~g~~l~~~~l~~~~~y~~~ 91 (114)
+|..|.+|.....+.....++|..|.+++ ..++.++.+|.+=...+.+|+.=.+.|...
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999966 334899999999999999999999888543
No 11
>PHA02246 hypothetical protein
Probab=94.21 E-value=1.4 Score=31.56 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHH
Q 039851 13 NLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAA 76 (114)
Q Consensus 13 ~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~ 76 (114)
++.++...++.++|+.+-+|+|++|+.|+..++..-..-.+-..==.+++-...|+++......
T Consensus 114 tVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIiiTEf~N~i 177 (192)
T PHA02246 114 TVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIATEFVNFV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeHHHHHHHH
Confidence 4455556678999999999999999999887765444333222222344443456666555443
No 12
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=93.81 E-value=0.5 Score=36.10 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCC
Q 039851 7 IFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPN 63 (114)
Q Consensus 7 i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d 63 (114)
.....|.+.+.+--.+-.||+.+..|+||.|++|+++.+.-.+....=+.|-.+.+-
T Consensus 8 ~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~ 64 (260)
T KOG2913|consen 8 LSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL 64 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc
Confidence 345566777777777889999999999999999998888777777777777777765
No 13
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=88.07 E-value=2 Score=32.11 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=58.6
Q ss_pred HHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHhhccCC
Q 039851 19 VYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPP 91 (114)
Q Consensus 19 ~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~~y~~~ 91 (114)
...|-++|+..=.|+|++++.|.......+..|..=..|.....+++.+...-.....++..-..-..+|.++
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3467789999999999999999998888899999999999988655878777788888777665555555443
No 14
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=86.37 E-value=3.7 Score=29.00 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHH
Q 039851 45 ISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVI 83 (114)
Q Consensus 45 ~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~ 83 (114)
...++++.+|+.|+++.++ ++-...|......+.+.+.
T Consensus 118 ~~~l~~~~~w~~~n~~igS-~~g~l~e~~~~~~n~~~i~ 155 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGS-WGGTLMEALFIISNLITIY 155 (163)
T ss_pred HHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998 8888888887777776543
No 15
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=80.18 E-value=5.7 Score=24.66 Aligned_cols=51 Identities=10% Similarity=0.263 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCcccchhH-HHHHHHHHHHHHHHhccCCcceEEeehHHHHHH
Q 039851 24 AKTFWHIVQRRSTEEFESIPY-ISKLLNAYFWVWYGIVKPNSVLVASVNGFGAAL 77 (114)
Q Consensus 24 l~~~~~I~k~ks~~~~s~~p~-~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l 77 (114)
+-|-..-.|+| ++.-|..| ......+.+=+.||+.++| +.++.-.+.|...
T Consensus 14 ~~QW~~SEk~k--~sv~P~~FW~lSl~Gs~lll~Y~i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAK--KSVVPVAFWYLSLIGSLLLLIYAIIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcC--CCCCcHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHhcChHH
Confidence 33433333443 33345555 4688999999999999999 6555545555443
No 16
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=77.12 E-value=2.2 Score=32.65 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHH
Q 039851 10 LLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNA 51 (114)
Q Consensus 10 ~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~ 51 (114)
+.|.+.+.+-..+.+||+..-+|+|++|++++..|......+
T Consensus 168 ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n 209 (260)
T KOG2913|consen 168 ILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN 209 (260)
T ss_pred HHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc
Confidence 355666777778999999999999999999987776554443
No 17
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=76.07 E-value=17 Score=27.26 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccC
Q 039851 6 FIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKP 62 (114)
Q Consensus 6 ~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~ 62 (114)
..+|+.....++.. -+||+.+|+.+||++++|...+..-.+.-..-+.|.+-.+
T Consensus 32 klLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g 85 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSG 85 (230)
T ss_pred hhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcC
Confidence 34455444444444 5999999999999999999888888888888888887665
No 18
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=73.01 E-value=9 Score=31.10 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHH
Q 039851 9 GLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEII 80 (114)
Q Consensus 9 g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~ 80 (114)
-+++.+-+++=++|-=.++.-++++||.+++|.-..+.-+++.++=++|=+=.+-++.|.+++++|++++..
T Consensus 303 ~~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 303 FVVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhhe
Confidence 345666777788888889999999999999998888777777777777755444468899999999998864
No 19
>COG3952 Predicted membrane protein [Function unknown]
Probab=64.06 E-value=17 Score=24.36 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=39.0
Q ss_pred cCCCcccchhHH-HHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHhhcc
Q 039851 34 RSTEEFESIPYI-SKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFA 89 (114)
Q Consensus 34 ks~~~~s~~p~~-~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~~y~ 89 (114)
++...+| .+|+ +..+.+.+=+.|-+-++| ..-+..|+.|+..++.-+-+...-+
T Consensus 51 a~rsv~P-~~FW~~sllGg~l~L~Yfi~~~D-pV~Vl~~~~glF~~l~nL~L~~ker 105 (113)
T COG3952 51 ANRSVIP-VLFWYFSLLGGLLLLSYFIRRQD-PVFVLGQACGLFIYLRNLWLIIKER 105 (113)
T ss_pred cCCCcch-HHHHHHHHHhhHHHHHHHHHhcc-hHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3334443 4454 688999999999999999 5445678888888887777665543
No 20
>PRK11387 S-methylmethionine transporter; Provisional
Probab=53.15 E-value=1.2e+02 Score=24.43 Aligned_cols=24 Identities=4% Similarity=-0.101 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCchh
Q 039851 72 GFGAALEIIYVIIFLIFAPPMMRG 95 (114)
Q Consensus 72 ~~g~~l~~~~l~~~~~y~~~~~~~ 95 (114)
..|..+-..-...|..+.+++|++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T PRK11387 439 WCGIPFVALCYGAYYLTQRLKRNM 462 (471)
T ss_pred HHHHHHHHHHHHHHHHhccccccc
Confidence 345555555555666665555554
No 21
>PHA02246 hypothetical protein
Probab=49.45 E-value=97 Score=22.32 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCC-cceEEeehHHHHHHHH
Q 039851 1 MASLNFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPN-SVLVASVNGFGAALEI 79 (114)
Q Consensus 1 m~~~~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d-~~~i~~~N~~g~~l~~ 79 (114)
||.+...++ ...++..-....|+++...|.||.+++| -.|+-...-+..-..|-.+..| .-+=+.+-.....+++
T Consensus 1 md~~~~~~s---~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyNlL~T~~~~fqi~svg~nl~lgi 76 (192)
T PHA02246 1 MDNLSHYLS---ILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYNLLLTDASVFQIVSVGLNLTLGI 76 (192)
T ss_pred CchHHHHHH---HHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHHHHhcCCceEEEeeeehhhhhhh
Confidence 454444443 4445555567899999999999999987 5677777777888889887654 1122233334455555
Q ss_pred HHHHH
Q 039851 80 IYVII 84 (114)
Q Consensus 80 ~~l~~ 84 (114)
+.+.+
T Consensus 77 vcLlv 81 (192)
T PHA02246 77 VCLLV 81 (192)
T ss_pred hheee
Confidence 55433
No 22
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=47.42 E-value=19 Score=28.45 Aligned_cols=49 Identities=6% Similarity=-0.112 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHhhccCCC
Q 039851 43 PYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPM 92 (114)
Q Consensus 43 p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~~y~~~~ 92 (114)
|-.+...-++.|-.+....+. ..++..|..|..++..-.+.++-+.|.+
T Consensus 245 PPa~~~Gi~la~g~~~~a~ga-~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 245 PPAVATGILLVISPLPLAVKS-LILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred chHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 333344445556555666665 7788999999999988888777777655
No 23
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.11 E-value=50 Score=18.31 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCc
Q 039851 3 SLNFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEE 38 (114)
Q Consensus 3 ~~~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~ 38 (114)
+..++.+..-.+.++.+++.-+-.+.-..+.|+.++
T Consensus 2 ~~~~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 2 TYETLQGFARSIGTVLFFVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence 556677777777777777777777777777665443
No 24
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=45.32 E-value=11 Score=27.77 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=41.5
Q ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHh
Q 039851 29 HIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFL 86 (114)
Q Consensus 29 ~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~ 86 (114)
++-|.|.+++ |.+..+.+.+++.+|..+=..... +-++..|.+|.+.-+.+....+
T Consensus 99 ~ipRsReVgQ-S~ltSv~Tti~all~s~~lv~Rir-Pdlil~NGPGTCv~i~~~a~l~ 154 (211)
T KOG3339|consen 99 EIPRSREVGQ-SWLTSVFTTIWALLQSFVLVWRIR-PDLILCNGPGTCVPICLSAYLM 154 (211)
T ss_pred ecchhhhhhh-hhhhhHHHHHHHHHHHheEEEecC-CCEEEECCCCcEeHHHHHHHHH
Confidence 4778888887 677778888888888885444333 5589999999887776655544
No 25
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=44.21 E-value=88 Score=20.33 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=42.0
Q ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHhhccCCC
Q 039851 29 HIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPM 92 (114)
Q Consensus 29 ~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~~y~~~~ 92 (114)
-|.|++. -+-..+|.+...+..++=..+.++.+| ..+..--..|.+.+..-..++=.+++++
T Consensus 24 ~IkkT~~-v~~K~iPlIs~viGilLG~~~~~~~~~-~~l~~~~~aG~laGlAaTGL~e~~t~r~ 85 (93)
T PF06946_consen 24 AIKKTKV-VPNKWIPLISVVIGILLGAAAYPLTGD-GNLALMAWAGGLAGLAATGLFEQFTNRS 85 (93)
T ss_pred HHHHhcc-CCcchhhHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 3444433 344789999999999998999998887 4333333457777777777766666533
No 26
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.84 E-value=45 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.418 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccc
Q 039851 4 LNFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFES 41 (114)
Q Consensus 4 ~~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~ 41 (114)
..-++|.+|.++.+.++++.+ .+-+|+|+..+..+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~---irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYC---IRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHS---------
T ss_pred eehhHHHHHHHHHHHHHHHHH---HHHHhccCCCCCCC
Confidence 345678877777766544433 33444444444444
No 27
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=42.29 E-value=84 Score=23.75 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHH-HHHH
Q 039851 4 LNFIFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLN-AYFW 54 (114)
Q Consensus 4 ~~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n-~~lW 54 (114)
..+++|+.+.+.+-.|..-.=-.+++.+-+-|-||.+-.+...+++| |..|
T Consensus 131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~ 182 (290)
T KOG4314|consen 131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFIS 182 (290)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHh
Confidence 45688888888887776666677788888888888877777777777 4444
No 28
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=40.12 E-value=63 Score=26.44 Aligned_cols=53 Identities=13% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH--HHHHhcCCCcccchhHHHHHHHHHHHHHHHh
Q 039851 5 NFIFGLLGNLTTGLVYLSPAKTFW--HIVQRRSTEEFESIPYISKLLNAYFWVWYGI 59 (114)
Q Consensus 5 ~~i~g~~~~i~ti~~~~spl~~~~--~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~ 59 (114)
++..=.+++..-..|. |=..+- -..|+||+-+.-...+....+.+.+|..||+
T Consensus 5 d~~wml~sa~LV~lMt--pGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gy 59 (409)
T COG0004 5 DTAWMLLSAALVLLMT--PGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGY 59 (409)
T ss_pred cHHHHHHHHHHHHHHh--hHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555554 333332 3678888887766777788899999999998
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=39.23 E-value=2e+02 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Q 039851 8 FGLLGNLTTGLVYLSPAKTFWHIVQR 33 (114)
Q Consensus 8 ~g~~~~i~ti~~~~spl~~~~~I~k~ 33 (114)
+..+++......|..+.....+.+|+
T Consensus 360 l~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 360 IASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777776666665
No 30
>PRK10655 potE putrescine transporter; Provisional
Probab=38.59 E-value=2e+02 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhc
Q 039851 11 LGNLTTGLVYLSPAKTFWHIVQRR 34 (114)
Q Consensus 11 ~~~i~ti~~~~spl~~~~~I~k~k 34 (114)
++++.....|..+.-...+.+|++
T Consensus 354 ~~~~~~~i~y~~~~~~~~~lr~~~ 377 (438)
T PRK10655 354 LAVVTNIIPYILSMAALVIIQKVA 377 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344445555555555555555443
No 31
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=35.37 E-value=61 Score=15.95 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=12.2
Q ss_pred HhhHHHHHHHHHhcC
Q 039851 21 LSPAKTFWHIVQRRS 35 (114)
Q Consensus 21 ~spl~~~~~I~k~ks 35 (114)
.+.+|++..++|+|.
T Consensus 10 a~~LP~lISWIK~kr 24 (26)
T PF01372_consen 10 ATGLPTLISWIKNKR 24 (26)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHh
Confidence 467899999999874
No 32
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=1.1e+02 Score=20.98 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccC-CcceEEeehHHHHHHHHHHHHHHhhcc
Q 039851 23 PAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKP-NSVLVASVNGFGAALEIIYVIIFLIFA 89 (114)
Q Consensus 23 pl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~-d~~~i~~~N~~g~~l~~~~l~~~~~y~ 89 (114)
|+..+.+. +||-+-+|..+..+.++-+.+.+.|.+... .++-++.+.+.....+.+|..=|..|.
T Consensus 39 piAal~Dm--kK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 39 PIAALVDM--KKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATNETAQLAQGSRFLNYN 104 (132)
T ss_pred hHHHHHhc--cCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 55555554 567777888888899999999999999663 238889999999999999987776653
No 33
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.62 E-value=1.8e+02 Score=22.10 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC---CCcccchhHHH------HHHHHHHHHHHHhccCCcceEEeeh
Q 039851 5 NFIFGLLGNLTTGLVYLSPAKTFWHIVQRRS---TEEFESIPYIS------KLLNAYFWVWYGIVKPNSVLVASVN 71 (114)
Q Consensus 5 ~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks---~~~~s~~p~~~------~~~n~~lW~~YG~l~~d~~~i~~~N 71 (114)
+.++|...++++=++|.+-+--+.-++.+.+ .++-+.+.|+. .+.++..+..|-...+| -|-+-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn-~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRN-KPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcC-CCCCCCC
Confidence 4677887777777777765555555554441 22223343333 24456677788887776 4544444
No 34
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=23.71 E-value=1.1e+02 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHHhcCCCcccchhHHHHHH
Q 039851 20 YLSPAKTFWHIVQRRSTEEFESIPYISKLL 49 (114)
Q Consensus 20 ~~spl~~~~~I~k~ks~~~~s~~p~~~~~~ 49 (114)
+.+|-.+..++.|++.+........+....
T Consensus 2 l~~P~~~w~~i~~~~~~~~~~~~~~~l~~~ 31 (170)
T PF06930_consen 2 LTSPSDEWERIKREHESSWALYLVHVLLLA 31 (170)
T ss_pred cCChHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 458999999998888877655444444433
No 35
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=23.35 E-value=4e+02 Score=21.44 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHhc
Q 039851 13 NLTTGLVYLSPAKTFWHIVQRR 34 (114)
Q Consensus 13 ~i~ti~~~~spl~~~~~I~k~k 34 (114)
++.....|+.+.....+.+|+|
T Consensus 364 ~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 364 VVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444444444444444444
No 36
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=22.55 E-value=1.3e+02 Score=21.90 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=23.0
Q ss_pred ehHHHHH-HHHHHHHHHhhccCCCchhHHHHHHHHHHHHHhhh
Q 039851 70 VNGFGAA-LEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGT 111 (114)
Q Consensus 70 ~N~~g~~-l~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
.-..|.. ++..-+..+..|+++ |...||+ +..|.+|++.
T Consensus 94 vRlyGgAL~s~aLi~w~~l~t~e-k~iIrwt--LL~ea~y~~v 133 (179)
T PF14936_consen 94 VRLYGGALLSIALIFWNALYTAE-KAIIRWT--LLSEACYFGV 133 (179)
T ss_pred ehhhhHHHHHHHHHHHHHHhHHH-HHHHHHH--HHHHHHHHHH
Confidence 3445544 444445555566655 5557776 6677777763
No 37
>PRK03427 cell division protein ZipA; Provisional
Probab=22.51 E-value=1.1e+02 Score=24.38 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=25.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Q 039851 1 MASLNFIFGLLGNLTTGLVYLSPAKTFWHIVQRRST 36 (114)
Q Consensus 1 m~~~~~i~g~~~~i~ti~~~~spl~~~~~I~k~ks~ 36 (114)
|.-++.|+=++|.|+-+.+. +..+|..+|.||+
T Consensus 2 MqdLrLiLivvGAIAIiAlL---~HGlWtsRKers~ 34 (333)
T PRK03427 2 MQDLRLILIIVGAIAIIALL---VHGFWTSRKERSS 34 (333)
T ss_pred chhhhhHHHHHHHHHHHHHH---HHhhhhccccccc
Confidence 66677888888888777764 6778888888874
No 38
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.16 E-value=5e+02 Score=22.14 Aligned_cols=52 Identities=17% Similarity=0.531 Sum_probs=39.5
Q ss_pred HHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHH
Q 039851 20 YLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYV 82 (114)
Q Consensus 20 ~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l 82 (114)
+..|+..+-+.+-.=+-+++.|.|+++. ..++.||.+-+| . ..|+++.+.-+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai----~f~lfFGmM~gD-~------GyGLil~l~~~ 376 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAI----FFPLFFGMMLGD-A------GYGLLLLLIGL 376 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHH----HHHHHHHHHHHh-H------HHHHHHHHHHH
Confidence 3568888888888888888888888765 457889999999 2 46777776443
No 39
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=21.88 E-value=1.3e+02 Score=15.29 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=13.6
Q ss_pred cCCCcccchhHHHHHHHHHHHHHH
Q 039851 34 RSTEEFESIPYISKLLNAYFWVWY 57 (114)
Q Consensus 34 ks~~~~s~~p~~~~~~n~~lW~~Y 57 (114)
|+.++-+...+...++.+.+++.+
T Consensus 3 kT~D~a~i~ly~~l~~~s~~~Li~ 26 (29)
T TIGR03063 3 KTGDSAQIGLYAVLFLGSGLFLIR 26 (29)
T ss_pred CCccchhHHHHHHHHHHHHHHHhh
Confidence 344444455666666666666654
No 40
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=21.78 E-value=48 Score=23.41 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCcccchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHh
Q 039851 27 FWHIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFL 86 (114)
Q Consensus 27 ~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~ 86 (114)
+.++-|.|.+++- ........+.+++....=+.... +-++++|..|..+...+..-..
T Consensus 57 ~~~~~r~r~v~q~-~~~~~~~~l~~~~~~~~il~r~r-Pdvii~nGpg~~vp~~~~~~l~ 114 (170)
T PF08660_consen 57 ILEIPRAREVGQS-YLTSIFTTLRAFLQSLRILRRER-PDVIISNGPGTCVPVCLAAKLL 114 (170)
T ss_pred eeccceEEEechh-hHhhHHHHHHHHHHHHHHHHHhC-CCEEEEcCCceeeHHHHHHHHH
Confidence 3445566666652 34445566666666666666555 6689999999988887766655
No 41
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=20.69 E-value=2.6e+02 Score=18.27 Aligned_cols=30 Identities=7% Similarity=0.126 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCc
Q 039851 9 GLLGNLTTGLVYLSPAKTFWHIVQRRSTEE 38 (114)
Q Consensus 9 g~~~~i~ti~~~~spl~~~~~I~k~ks~~~ 38 (114)
|+++.+..+.-++|-+.-+..+.|+...++
T Consensus 70 ~W~T~~S~~tS~isIL~LV~~~~KKe~~~d 99 (100)
T PF06363_consen 70 AWFTVVSAVTSFISILLLVTKIFKKEKSKD 99 (100)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 666777777777777777778887766553
No 42
>COG1808 Predicted membrane protein [Function unknown]
Probab=20.31 E-value=2.7e+02 Score=22.16 Aligned_cols=52 Identities=10% Similarity=-0.074 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHhhccCCC
Q 039851 40 ESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPM 92 (114)
Q Consensus 40 s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~~y~~~~ 92 (114)
+.+|-.+...-+..|-.||+..++ .+.+..|.++..+...-...+.-+..++
T Consensus 153 aL~pP~~~~g~gia~g~~~la~gs-~~lll~nll~i~l~a~I~~~~~G~~~~e 204 (334)
T COG1808 153 ALMPPLCTVGLGIAVGNLGLALGS-ILLLLGNLLFINLSAMIGFWAIGLSLLE 204 (334)
T ss_pred hhcchHHHHHHHHHHHhhHHHHcc-HHHHHHHHHHHHHHHHHHHHHhccCccC
Confidence 455666677777899999999998 8889999999988887777776666543
Done!