Query 039851
Match_columns 114
No_of_seqs 115 out of 1019
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 32.7 42 0.0014 26.1 3.7 56 3-59 3-59 (399)
2 1u7g_A Probable ammonium trans 23.5 53 0.0018 25.3 2.8 56 4-59 8-64 (385)
3 2nr1_A NR1 M2, M2; receptor, s 16.8 56 0.0019 15.7 1.0 15 48-62 8-22 (27)
4 1rkl_A Dolichyl-diphosphooligo 16.3 91 0.0031 15.9 1.9 21 67-87 8-28 (36)
5 3gia_A Uncharacterized protein 13.0 4.1E+02 0.014 19.4 6.4 20 15-34 350-369 (444)
6 3qrx_B Melittin; calcium-bindi 10.6 1.6E+02 0.0056 13.7 1.6 14 22-35 11-24 (26)
7 2k9p_A Pheromone alpha factor 9.8 2.7E+02 0.0094 16.5 2.9 34 52-88 38-71 (80)
8 3l1l_A Arginine/agmatine antip 9.7 5.4E+02 0.018 18.7 7.5 24 12-35 357-380 (445)
9 3dad_A FH1/FH2 domain-containi 9.1 2E+02 0.0068 21.8 2.6 31 23-53 255-285 (339)
10 1pp7_U 39 kDa initiator bindin 6.2 2.7E+02 0.0093 18.2 1.8 16 25-40 16-31 (131)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=32.73 E-value=42 Score=26.11 Aligned_cols=56 Identities=20% Similarity=0.455 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhcCCCcccchhHHHHHHHHHHHHHHHh
Q 039851 3 SLNFIFGLLGNLTTGLVYLSPAKTFW-HIVQRRSTEEFESIPYISKLLNAYFWVWYGI 59 (114)
Q Consensus 3 ~~~~i~g~~~~i~ti~~~~spl~~~~-~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~ 59 (114)
..++..=++++..-..|. ..+.-+. -..|+||+-++-.-.+....+.+..|..+|+
T Consensus 3 ~~d~~w~l~~~~LV~~M~-~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy 59 (399)
T 2b2h_A 3 DGNVAWILASTALVMLMV-PGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666555554 2333332 2568888888777778888999999999887
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=23.52 E-value=53 Score=25.34 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhcCCCcccchhHHHHHHHHHHHHHHHh
Q 039851 4 LNFIFGLLGNLTTGLVYLSPAKTFW-HIVQRRSTEEFESIPYISKLLNAYFWVWYGI 59 (114)
Q Consensus 4 ~~~i~g~~~~i~ti~~~~spl~~~~-~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~ 59 (114)
.++..=.++...-..|....+.-++ -..|+||+-++-.-.+....+.+..|..+|+
T Consensus 8 ~d~~w~l~~~~LV~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy 64 (385)
T 1u7g_A 8 ADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 64 (385)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666665433444433 3568888888777778888999999999887
No 3
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=16.77 E-value=56 Score=15.66 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhccC
Q 039851 48 LLNAYFWVWYGIVKP 62 (114)
Q Consensus 48 ~~n~~lW~~YG~l~~ 62 (114)
-+.+.+|+..|.+.+
T Consensus 8 ~l~aa~wF~WGvlln 22 (27)
T 2nr1_A 8 TLSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ehhhhHHHhhHhhee
Confidence 356788999998764
No 4
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=16.26 E-value=91 Score=15.92 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=12.3
Q ss_pred EEeehHHHHHHHHHHHHHHhh
Q 039851 67 VASVNGFGAALEIIYVIIFLI 87 (114)
Q Consensus 67 i~~~N~~g~~l~~~~l~~~~~ 87 (114)
-..+|.+|...-..-+.-.+.
T Consensus 8 ~~lan~lG~~~~~LIvlYH~v 28 (36)
T 1rkl_A 8 NSLAITFGIVMMTLIVIYHAV 28 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788887766544443333
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=13.05 E-value=4.1e+02 Score=19.42 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=8.4
Q ss_pred HHHHHHHhhHHHHHHHHHhc
Q 039851 15 TTGLVYLSPAKTFWHIVQRR 34 (114)
Q Consensus 15 ~ti~~~~spl~~~~~I~k~k 34 (114)
.....|..+.-...+.+|++
T Consensus 350 ~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 350 VFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 33334444444444444443
No 6
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=10.63 E-value=1.6e+02 Score=13.67 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHhcC
Q 039851 22 SPAKTFWHIVQRRS 35 (114)
Q Consensus 22 spl~~~~~I~k~ks 35 (114)
..+|.+..++|+|.
T Consensus 11 ~~LP~liSWiK~kr 24 (26)
T 3qrx_B 11 TGLPALISWIKRKR 24 (26)
T ss_pred ccchHHHHHHHHHh
Confidence 45888888888875
No 7
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=9.76 E-value=2.7e+02 Score=16.46 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=23.5
Q ss_pred HHHHHHHhccCCcceEEeehHHHHHHHHHHHHHHhhc
Q 039851 52 YFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIF 88 (114)
Q Consensus 52 ~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~l~~~~~y 88 (114)
.+|+..- ++. -|++.-|...+++...-..++..|
T Consensus 38 il~lltk--krr-spiF~lN~~~L~l~iirs~l~~~y 71 (80)
T 2k9p_A 38 VVWITSR--SRK-TPIFIINQVSLFLIILHSALYFKY 71 (80)
T ss_dssp HHHHHTC--CSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--ccc-ChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5565553 333 578888888888888877777665
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=9.69 E-value=5.4e+02 Score=18.72 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcC
Q 039851 12 GNLTTGLVYLSPAKTFWHIVQRRS 35 (114)
Q Consensus 12 ~~i~ti~~~~spl~~~~~I~k~ks 35 (114)
+++.....|..+.-...+.+|++.
T Consensus 357 ~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 357 SVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Confidence 344444555555555555555443
No 9
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=9.13 E-value=2e+02 Score=21.84 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCCCcccchhHHHHHHHHHH
Q 039851 23 PAKTFWHIVQRRSTEEFESIPYISKLLNAYF 53 (114)
Q Consensus 23 pl~~~~~I~k~ks~~~~s~~p~~~~~~n~~l 53 (114)
|++.+.+++++|+.++.....+.++++|..+
T Consensus 255 p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 255 PWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp TTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 5777778888888888777777888888764
No 10
>1pp7_U 39 kDa initiator binding protein; core promoter, transcription initation, IBP39, T. vaginalis, transcription/DNA complex; 2.45A {Trichomonas vaginalis} SCOP: a.4.5.44 PDB: 1pp8_U
Probab=6.22 E-value=2.7e+02 Score=18.15 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCccc
Q 039851 25 KTFWHIVQRRSTEEFE 40 (114)
Q Consensus 25 ~~~~~I~k~ks~~~~s 40 (114)
+.+.+++|+||..+-+
T Consensus 16 ~ei~~~lk~ks~r~~~ 31 (131)
T 1pp7_U 16 PEIVAALKRKSSRDPN 31 (131)
T ss_dssp HHHHHHHHSCCCSSGG
T ss_pred HHHHHHHHHhccCCcc
Confidence 5788999999988754
Done!