Query 039851
Match_columns 114
No_of_seqs 115 out of 1019
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 03:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039851.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039851hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 17.7 57 0.0041 15.5 4.0 30 7-41 6-35 (37)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 13.0 68 0.0049 14.2 2.6 19 72-90 9-27 (30)
3 d1q90a3 f.23.23.1 (A:248-292) 10.3 63 0.0046 16.0 1.5 29 7-40 5-33 (45)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 8.1 1.1E+02 0.0077 13.2 1.8 9 51-59 5-13 (26)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 8.1 1.4E+02 0.01 21.0 3.2 55 5-59 7-62 (383)
6 d2croa_ a.35.1.2 (A:) cro 434 6.4 1.2E+02 0.0088 15.0 1.6 34 24-58 30-64 (65)
7 d1xioa_ f.13.1.1 (A:) Sensory 6.0 3.3E+02 0.024 16.9 5.5 14 46-59 168-181 (226)
8 d1v54a_ f.24.1.1 (A:) Mitochon 5.6 3.7E+02 0.027 19.5 4.6 46 11-56 152-197 (514)
9 d1ffta_ f.24.1.1 (A:) Cytochro 5.2 4E+02 0.029 19.1 4.6 33 24-56 155-190 (501)
10 d1jfia_ a.22.1.3 (A:) Negative 4.7 2.5E+02 0.018 14.0 4.3 11 23-33 4-14 (66)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.67 E-value=57 Score=15.53 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCcccc
Q 039851 7 IFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFES 41 (114)
Q Consensus 7 i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~ 41 (114)
+-|.++..+++. +.++--+.|+|..|.++.
T Consensus 6 v~gl~~F~~~v~-----laQi~lVlKKKQ~EkVQa 35 (37)
T d1vf5c3 6 VKWMIAFICLVM-----LAQLMLILKKKQVEKVQA 35 (37)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHTGGGCTTGG
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 456666666654 678888999999988753
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.00 E-value=68 Score=14.17 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 039851 72 GFGAALEIIYVIIFLIFAP 90 (114)
Q Consensus 72 ~~g~~l~~~~l~~~~~y~~ 90 (114)
.+.+.++.++..+|++-+|
T Consensus 9 ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 9 IFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3556666666666666544
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.30 E-value=63 Score=16.00 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCccc
Q 039851 7 IFGLLGNLTTGLVYLSPAKTFWHIVQRRSTEEFE 40 (114)
Q Consensus 7 i~g~~~~i~ti~~~~spl~~~~~I~k~ks~~~~s 40 (114)
+-|.++..+++. +.|+--+.|+|..|.++
T Consensus 5 v~gll~F~~~v~-----laQi~LVLKKKQfEKVQ 33 (45)
T d1q90a3 5 IQGLLVFFSFVL-----LTQVLLVLKKKQFEKVQ 33 (45)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 456666665554 56777788998877654
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.13 E-value=1.1e+02 Score=13.17 Aligned_cols=9 Identities=0% Similarity=0.183 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 039851 51 AYFWVWYGI 59 (114)
Q Consensus 51 ~~lW~~YG~ 59 (114)
..+|+.++.
T Consensus 5 laiw~fw~f 13 (26)
T d1rzhh2 5 LAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555543
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.11 E-value=1.4e+02 Score=20.97 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH-HHHHhcCCCcccchhHHHHHHHHHHHHHHHh
Q 039851 5 NFIFGLLGNLTTGLVYLSPAKTFW-HIVQRRSTEEFESIPYISKLLNAYFWVWYGI 59 (114)
Q Consensus 5 ~~i~g~~~~i~ti~~~~spl~~~~-~I~k~ks~~~~s~~p~~~~~~n~~lW~~YG~ 59 (114)
++..=+++...-+.|....+.-+. -..|+||+.+.-.-.+....+.+..|..+|+
T Consensus 7 d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy 62 (383)
T d1u7ga_ 7 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeE
Confidence 334444454544444322222221 1356777776666677778889999999886
No 6
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=6.37 E-value=1.2e+02 Score=15.01 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCCcccchhHHHHHHH-HHHHHHHH
Q 039851 24 AKTFWHIVQRRSTEEFESIPYISKLLN-AYFWVWYG 58 (114)
Q Consensus 24 l~~~~~I~k~ks~~~~s~~p~~~~~~n-~~lW~~YG 58 (114)
-.++.++-+.++... ..+.-++-.++ +.-|+++|
T Consensus 30 ~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 30 QQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHHC
T ss_pred HhHHHHHHCCCCCCH-HHHHHHHHHhCCCHHHHhhC
Confidence 455666666554322 22222333333 47777776
No 7
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=5.95 E-value=3.3e+02 Score=16.95 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHh
Q 039851 46 SKLLNAYFWVWYGI 59 (114)
Q Consensus 46 ~~~~n~~lW~~YG~ 59 (114)
...+...+|..|++
T Consensus 168 l~~~~~v~W~~YPi 181 (226)
T d1xioa_ 168 LVTYFTVLWIGYPI 181 (226)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555689999987
No 8
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.64 E-value=3.7e+02 Score=19.51 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHH
Q 039851 11 LGNLTTGLVYLSPAKTFWHIVQRRSTEEFESIPYISKLLNAYFWVW 56 (114)
Q Consensus 11 ~~~i~ti~~~~spl~~~~~I~k~ks~~~~s~~p~~~~~~n~~lW~~ 56 (114)
+..+.++.--+.-+.++.+.++++.+.+--++..+..++.+.+|+.
T Consensus 152 l~gissilg~iNfi~Ti~~~r~~gm~~~r~Plf~Ws~~vtsil~l~ 197 (514)
T d1v54a_ 152 LAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLL 197 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccccchHHHHHHHHHHHHHH
Confidence 3444455544555666666666666666566777788888877743
No 9
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=5.17 E-value=4e+02 Score=19.07 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCC---cccchhHHHHHHHHHHHHH
Q 039851 24 AKTFWHIVQRRSTE---EFESIPYISKLLNAYFWVW 56 (114)
Q Consensus 24 l~~~~~I~k~ks~~---~~s~~p~~~~~~n~~lW~~ 56 (114)
+.-+..+.|.|..+ +-.++.....+..+.+|..
T Consensus 155 in~i~Ti~~~R~~gm~~~~~PLf~w~~~~t~il~~l 190 (501)
T d1ffta_ 155 INFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIA 190 (501)
T ss_dssp HHHHHHHHHCSCTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCChhhccchhheeeeeeeeHhh
Confidence 44445555655533 3345666667777766653
No 10
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.66 E-value=2.5e+02 Score=13.99 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=9.1
Q ss_pred hHHHHHHHHHh
Q 039851 23 PAKTFWHIVQR 33 (114)
Q Consensus 23 pl~~~~~I~k~ 33 (114)
|+.-+++|.|.
T Consensus 4 P~srVkkimk~ 14 (66)
T d1jfia_ 4 PPARIKKIMQT 14 (66)
T ss_dssp CHHHHHHHHTT
T ss_pred ChHHHHHHHhc
Confidence 78888899984
Done!