BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039852
         (731 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 32.3 bits (72), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 395 SSLTPKIPRNIEKLVHLRYLNLSGQDIV-QLSETLCELYILEKLDISYCMDLEELPEGIK 453
           ++L   IP  I KL  L YL ++  ++   + + L ++  L  LD SY      LP  I 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 454 KLINMRHLLNDG 465
            L N+  +  DG
Sbjct: 147 SLPNLVGITFDG 158


>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
 pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
 pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
 pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
 pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
          Length = 296

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 9/73 (12%)

Query: 184 VGERNELLSKMLCESSDQQKGLH--IISIVGMGGIGK-TTLAQLASNHVEVKREFHKILW 240
           VG+  E+L  ML  +   Q+ +H   I + G  G GK TTLA+LA+  + +  +  KI +
Sbjct: 82  VGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAF 139

Query: 241 ACVSETFDEFRIA 253
                T D +RIA
Sbjct: 140 I----TTDTYRIA 148


>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
          Intracellular Mla Immune Receptors Defines A Minimal
          Functional Module For Triggering Cell Death
          Length = 115

 Score = 30.0 bits (66), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 4  AIVSTILEQLISLAAKEITQHVMLVTGVEKEVKSLTSHLQAIQAVLNDAEE--KQVKDKA 61
          A +S ++ +L  L  +E   H     GV+K ++ L   L++  A L    E  ++  D  
Sbjct: 1  AAISNLIPKLGELLTEEFKLH----KGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56

Query: 62 VRRWLGRLNYASYDIEDVLDEWITARRQLQIEG 94
           + W   +   SY IEDV+D+++     +Q++G
Sbjct: 57 DKLWADEVRELSYVIEDVVDKFL-----VQVDG 84


>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group P21212
 pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
 pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
          Length = 320

 Score = 29.3 bits (64), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 5/44 (11%)

Query: 205 LHIISIVGMGGIGKTT-LAQLASNHVEVKREFHKILWACVSETF 247
           L+I  +VG+ G GKTT LA++A+ + E+    +K+L A  ++TF
Sbjct: 105 LNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAA-ADTF 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,211,366
Number of Sequences: 62578
Number of extensions: 732442
Number of successful extensions: 2293
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2287
Number of HSP's gapped (non-prelim): 15
length of query: 731
length of database: 14,973,337
effective HSP length: 106
effective length of query: 625
effective length of database: 8,340,069
effective search space: 5212543125
effective search space used: 5212543125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)