Query 039852
Match_columns 731
No_of_seqs 438 out of 3491
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.2E-64 6.9E-69 569.0 32.2 635 2-704 1-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-46 2.3E-51 450.7 32.4 528 133-710 133-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-29 2.2E-34 261.5 10.1 207 183-394 1-264 (287)
4 PLN00113 leucine-rich repeat r 99.8 9.6E-20 2.1E-24 219.2 9.3 267 400-706 179-464 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.9E-19 4.1E-24 216.6 10.4 269 399-705 154-439 (968)
6 KOG0444 Cytoskeletal regulator 99.8 5.2E-21 1.1E-25 196.8 -3.2 272 398-711 92-379 (1255)
7 KOG0472 Leucine-rich repeat pr 99.7 4.4E-20 9.5E-25 181.1 -4.5 269 400-705 128-539 (565)
8 PLN03210 Resistant to P. syrin 99.7 2.4E-17 5.3E-22 198.5 13.2 254 423-710 579-885 (1153)
9 KOG0472 Leucine-rich repeat pr 99.6 4.2E-18 9.2E-23 167.3 -8.8 250 401-706 60-309 (565)
10 KOG0444 Cytoskeletal regulator 99.6 5.5E-17 1.2E-21 167.5 -1.6 248 400-688 117-380 (1255)
11 KOG4194 Membrane glycoprotein 99.6 6.7E-16 1.5E-20 158.7 2.2 306 368-705 81-427 (873)
12 KOG0618 Serine/threonine phosp 99.5 1.4E-15 3.1E-20 164.7 -2.5 89 398-488 57-145 (1081)
13 KOG4194 Membrane glycoprotein 99.4 1.6E-14 3.6E-19 148.6 -3.0 261 405-703 169-448 (873)
14 KOG0618 Serine/threonine phosp 99.4 1E-14 2.2E-19 158.1 -4.9 244 409-706 241-488 (1081)
15 KOG0617 Ras suppressor protein 99.3 2.5E-14 5.4E-19 124.8 -4.8 164 405-594 29-192 (264)
16 PRK15370 E3 ubiquitin-protein 99.3 1.5E-12 3.2E-17 147.0 6.0 231 401-706 193-427 (754)
17 PRK15387 E3 ubiquitin-protein 99.3 8.8E-12 1.9E-16 139.9 10.1 75 608-705 382-456 (788)
18 KOG4658 Apoptotic ATPase [Sign 99.2 6E-12 1.3E-16 144.3 4.0 180 409-622 545-731 (889)
19 PRK15370 E3 ubiquitin-protein 99.1 3.3E-11 7.2E-16 136.2 5.1 221 410-705 179-399 (754)
20 PRK15387 E3 ubiquitin-protein 99.1 2.4E-10 5.3E-15 128.4 10.6 219 399-705 214-433 (788)
21 KOG0617 Ras suppressor protein 99.1 6.5E-12 1.4E-16 109.8 -2.4 139 399-551 46-185 (264)
22 cd00116 LRR_RI Leucine-rich re 99.0 1.6E-11 3.5E-16 128.4 -3.1 89 401-489 15-117 (319)
23 KOG4237 Extracellular matrix p 98.9 4.1E-11 8.9E-16 118.6 -4.3 87 604-705 270-357 (498)
24 KOG4237 Extracellular matrix p 98.9 3.7E-11 8E-16 118.9 -5.6 95 398-493 79-177 (498)
25 cd00116 LRR_RI Leucine-rich re 98.9 1.1E-10 2.3E-15 122.2 -4.4 266 414-706 3-290 (319)
26 KOG4341 F-box protein containi 98.6 4.4E-09 9.5E-14 105.4 -3.1 162 537-730 292-456 (483)
27 PRK00411 cdc6 cell division co 98.6 4.9E-07 1.1E-11 97.4 12.4 118 176-295 28-149 (394)
28 cd01128 rho_factor Transcripti 98.5 2.5E-07 5.5E-12 90.9 7.5 91 204-295 15-114 (249)
29 TIGR02928 orc1/cdc6 family rep 98.5 9.1E-07 2E-11 94.3 12.1 118 176-295 13-140 (365)
30 TIGR03015 pepcterm_ATPase puta 98.5 3E-06 6.5E-11 86.1 15.3 89 204-295 42-134 (269)
31 KOG0532 Leucine-rich repeat (L 98.5 1.9E-08 4.1E-13 104.6 -1.1 137 398-551 110-246 (722)
32 PRK09376 rho transcription ter 98.4 4.5E-07 9.8E-12 92.7 7.7 89 205-294 169-266 (416)
33 KOG0532 Leucine-rich repeat (L 98.4 2.1E-08 4.5E-13 104.3 -3.4 183 399-618 88-270 (722)
34 KOG1909 Ran GTPase-activating 98.4 3.4E-08 7.5E-13 97.0 -2.0 230 404-648 25-280 (382)
35 PF14580 LRR_9: Leucine-rich r 98.3 1.1E-07 2.3E-12 87.8 -0.1 105 405-519 15-121 (175)
36 KOG3207 Beta-tubulin folding c 98.3 6.5E-08 1.4E-12 97.7 -1.6 215 403-679 115-335 (505)
37 PF13401 AAA_22: AAA domain; P 98.3 1.5E-06 3.3E-11 77.5 6.3 92 204-295 3-98 (131)
38 PTZ00202 tuzin; Provisional 98.2 9.3E-05 2E-09 76.4 18.7 107 173-290 257-367 (550)
39 COG4886 Leucine-rich repeat (L 98.2 6.2E-07 1.4E-11 96.7 2.9 88 399-488 129-217 (394)
40 KOG2120 SCF ubiquitin ligase, 98.2 6E-08 1.3E-12 93.0 -5.1 79 410-488 186-268 (419)
41 TIGR00767 rho transcription te 98.1 7.8E-06 1.7E-10 84.3 8.8 89 205-294 168-265 (415)
42 PF13191 AAA_16: AAA ATPase do 98.1 6.3E-06 1.4E-10 78.4 7.3 51 179-232 1-51 (185)
43 COG4886 Leucine-rich repeat (L 98.1 1.5E-06 3.3E-11 93.7 3.2 180 403-621 110-290 (394)
44 PF13855 LRR_8: Leucine rich r 98.1 3.7E-06 7.9E-11 63.3 4.1 57 409-466 1-59 (61)
45 KOG1259 Nischarin, modulator o 98.1 5.4E-07 1.2E-11 86.5 -0.7 64 401-466 276-339 (490)
46 KOG3207 Beta-tubulin folding c 98.1 7E-07 1.5E-11 90.4 -0.6 219 421-703 110-335 (505)
47 KOG2120 SCF ubiquitin ligase, 98.0 7.5E-08 1.6E-12 92.3 -7.5 146 505-681 228-374 (419)
48 KOG1259 Nischarin, modulator o 98.0 7.5E-07 1.6E-11 85.6 -1.4 41 401-441 206-246 (490)
49 PF14580 LRR_9: Leucine-rich r 98.0 3.3E-06 7.1E-11 77.9 2.7 130 535-703 15-149 (175)
50 PLN03150 hypothetical protein; 98.0 6.3E-06 1.4E-10 93.3 4.9 78 400-477 433-511 (623)
51 cd00009 AAA The AAA+ (ATPases 97.9 4.5E-05 9.9E-10 69.2 9.5 95 181-295 1-95 (151)
52 KOG3665 ZYG-1-like serine/thre 97.9 3.4E-06 7.4E-11 95.0 1.1 135 408-551 121-262 (699)
53 PRK11331 5-methylcytosine-spec 97.9 4E-05 8.8E-10 80.5 8.6 69 178-254 175-243 (459)
54 PF01637 Arch_ATPase: Archaeal 97.9 1.3E-05 2.8E-10 79.5 4.8 43 180-228 1-43 (234)
55 COG1474 CDC6 Cdc6-related prot 97.9 0.0001 2.2E-09 77.0 11.5 115 177-295 16-134 (366)
56 PRK04841 transcriptional regul 97.9 0.00028 6E-09 85.1 16.6 187 189-393 21-279 (903)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.3E-10 54.9 3.1 40 409-449 1-40 (44)
58 PTZ00112 origin recognition co 97.8 0.00039 8.4E-09 77.8 15.2 119 176-295 753-880 (1164)
59 PLN03150 hypothetical protein; 97.8 2.9E-05 6.3E-10 88.0 5.5 82 410-491 419-501 (623)
60 PRK15386 type III secretion pr 97.7 8.1E-05 1.8E-09 77.3 7.9 67 405-476 48-114 (426)
61 COG2256 MGS1 ATPase related to 97.7 0.00019 4E-09 72.9 10.0 88 175-295 27-115 (436)
62 PF05729 NACHT: NACHT domain 97.6 0.00014 3.1E-09 67.6 7.5 84 206-295 1-92 (166)
63 PF13855 LRR_8: Leucine rich r 97.6 8.9E-05 1.9E-09 55.7 4.8 36 668-704 23-59 (61)
64 PRK15386 type III secretion pr 97.6 6.4E-05 1.4E-09 78.1 4.9 64 535-625 48-111 (426)
65 TIGR00635 ruvB Holliday juncti 97.5 0.00029 6.2E-09 73.0 8.9 50 178-228 4-53 (305)
66 PRK00080 ruvB Holliday junctio 97.5 0.00042 9.1E-09 72.3 9.4 51 177-228 24-74 (328)
67 PF05496 RuvB_N: Holliday junc 97.5 0.00021 4.5E-09 67.6 6.2 56 177-235 23-78 (233)
68 KOG0531 Protein phosphatase 1, 97.5 2.4E-05 5.2E-10 84.5 -0.6 177 398-617 84-264 (414)
69 KOG2543 Origin recognition com 97.4 0.0011 2.4E-08 66.8 10.7 111 177-295 5-126 (438)
70 PRK08118 topology modulation p 97.4 6.9E-05 1.5E-09 69.5 1.8 35 206-240 2-37 (167)
71 KOG0531 Protein phosphatase 1, 97.4 4.3E-05 9.3E-10 82.6 0.4 79 405-487 114-193 (414)
72 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4.1E-09 49.4 3.4 40 432-473 1-40 (44)
73 PRK13342 recombination factor 97.4 0.00033 7.3E-09 75.4 6.7 45 178-228 12-59 (413)
74 KOG4341 F-box protein containi 97.3 9.6E-06 2.1E-10 81.9 -5.1 269 409-712 138-419 (483)
75 KOG2982 Uncharacterized conser 97.3 2.3E-05 4.9E-10 75.7 -2.7 82 607-700 198-285 (418)
76 KOG1909 Ran GTPase-activating 97.2 3.9E-05 8.5E-10 76.0 -1.8 248 367-648 32-308 (382)
77 PF05621 TniB: Bacterial TniB 97.2 0.0089 1.9E-07 59.6 14.6 107 185-295 44-156 (302)
78 PF13173 AAA_14: AAA domain 97.2 0.00064 1.4E-08 60.1 5.6 70 205-294 2-71 (128)
79 KOG2028 ATPase related to the 97.2 0.00087 1.9E-08 66.8 6.5 74 203-295 160-233 (554)
80 COG3903 Predicted ATPase [Gene 97.1 0.0018 4E-08 66.3 8.7 179 204-389 13-249 (414)
81 PF04665 Pox_A32: Poxvirus A32 97.1 0.0011 2.4E-08 64.2 6.7 37 205-243 13-49 (241)
82 KOG2227 Pre-initiation complex 97.0 0.012 2.6E-07 61.2 13.7 117 176-295 148-267 (529)
83 COG5238 RNA1 Ran GTPase-activa 97.0 0.0003 6.5E-09 67.3 1.9 262 408-685 29-317 (388)
84 KOG2004 Mitochondrial ATP-depe 97.0 0.0053 1.1E-07 66.9 11.2 72 176-252 409-480 (906)
85 PRK04195 replication factor C 96.9 0.0022 4.8E-08 70.6 8.1 50 177-228 13-62 (482)
86 COG0466 Lon ATP-dependent Lon 96.9 0.0022 4.8E-08 70.1 7.6 71 176-251 321-391 (782)
87 smart00382 AAA ATPases associa 96.9 0.0019 4.2E-08 57.9 6.2 86 206-295 3-89 (148)
88 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0013 2.7E-08 67.6 5.0 52 178-229 51-102 (361)
89 PRK07261 topology modulation p 96.8 0.0024 5.1E-08 59.5 6.3 34 207-240 2-36 (171)
90 COG3899 Predicted ATPase [Gene 96.8 0.012 2.7E-07 68.8 13.4 47 179-228 1-47 (849)
91 PRK13341 recombination factor 96.8 0.0024 5.3E-08 72.7 7.4 45 178-228 28-75 (725)
92 KOG1859 Leucine-rich repeat pr 96.8 0.0001 2.2E-09 79.7 -3.6 60 404-466 204-264 (1096)
93 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0037 8.1E-08 61.5 6.9 53 184-244 23-75 (226)
94 CHL00095 clpC Clp protease ATP 96.7 0.0066 1.4E-07 71.3 9.9 45 178-228 179-223 (821)
95 PRK06893 DNA replication initi 96.7 0.0029 6.2E-08 62.2 5.8 38 205-244 39-76 (229)
96 KOG4579 Leucine-rich repeat (L 96.7 0.00018 3.9E-09 61.6 -2.3 85 401-487 45-130 (177)
97 TIGR00763 lon ATP-dependent pr 96.7 0.0097 2.1E-07 69.5 10.9 52 177-228 319-370 (775)
98 TIGR02903 spore_lon_C ATP-depe 96.6 0.095 2.1E-06 59.3 18.1 61 178-244 154-217 (615)
99 PRK12608 transcription termina 96.6 0.011 2.4E-07 61.1 9.7 101 187-294 120-230 (380)
100 cd01133 F1-ATPase_beta F1 ATP 96.6 0.011 2.3E-07 58.7 9.2 88 205-294 69-173 (274)
101 KOG1859 Leucine-rich repeat pr 96.6 2.8E-05 6.1E-10 83.8 -9.4 22 402-423 102-123 (1096)
102 KOG2982 Uncharacterized conser 96.5 0.0018 3.9E-08 63.0 3.1 61 405-466 93-156 (418)
103 KOG3665 ZYG-1-like serine/thre 96.5 0.0013 2.8E-08 74.6 2.6 139 432-587 122-263 (699)
104 KOG1947 Leucine rich repeat pr 96.5 0.00037 8.1E-09 77.4 -1.8 44 668-711 399-444 (482)
105 TIGR02639 ClpA ATP-dependent C 96.5 0.0078 1.7E-07 69.8 8.8 45 178-228 182-226 (731)
106 PRK14961 DNA polymerase III su 96.5 0.05 1.1E-06 57.6 14.0 46 178-228 16-61 (363)
107 PF00004 AAA: ATPase family as 96.5 0.0049 1.1E-07 54.6 5.5 21 208-228 1-21 (132)
108 PF13207 AAA_17: AAA domain; P 96.5 0.0018 3.9E-08 56.5 2.6 22 207-228 1-22 (121)
109 TIGR02237 recomb_radB DNA repa 96.5 0.014 3E-07 56.6 9.0 87 204-294 11-107 (209)
110 TIGR01242 26Sp45 26S proteasom 96.5 0.008 1.7E-07 63.7 7.9 53 176-228 120-179 (364)
111 PRK09361 radB DNA repair and r 96.5 0.021 4.6E-07 56.0 10.4 87 204-294 22-117 (225)
112 PRK05541 adenylylsulfate kinas 96.4 0.0086 1.9E-07 56.2 7.3 36 204-241 6-41 (176)
113 PF00560 LRR_1: Leucine Rich R 96.4 0.0017 3.6E-08 37.2 1.3 22 410-431 1-22 (22)
114 PLN03025 replication factor C 96.4 0.048 1E-06 56.7 13.0 45 178-228 13-57 (319)
115 PRK14960 DNA polymerase III su 96.3 0.035 7.6E-07 61.5 11.8 45 178-227 15-59 (702)
116 PRK14963 DNA polymerase III su 96.3 0.0023 5E-08 70.0 2.7 47 178-229 14-60 (504)
117 PRK08116 hypothetical protein; 96.3 0.015 3.3E-07 58.4 8.4 73 206-293 115-187 (268)
118 PRK08727 hypothetical protein; 96.3 0.015 3.3E-07 57.2 8.2 36 206-243 42-77 (233)
119 TIGR00602 rad24 checkpoint pro 96.3 0.0078 1.7E-07 67.3 6.7 52 176-228 82-133 (637)
120 PRK14957 DNA polymerase III su 96.2 0.016 3.4E-07 63.8 8.7 45 178-227 16-60 (546)
121 COG2909 MalT ATP-dependent tra 96.2 0.15 3.2E-06 57.5 16.0 99 187-293 24-138 (894)
122 TIGR03499 FlhF flagellar biosy 96.2 0.018 3.8E-07 58.5 8.5 27 204-230 193-219 (282)
123 TIGR03345 VI_ClpV1 type VI sec 96.2 0.0054 1.2E-07 71.8 5.3 45 178-228 187-231 (852)
124 PHA02544 44 clamp loader, smal 96.2 0.017 3.7E-07 60.1 8.6 47 177-228 20-66 (316)
125 PRK06696 uridine kinase; Valid 96.2 0.012 2.6E-07 57.5 7.0 43 183-228 3-45 (223)
126 PF05673 DUF815: Protein of un 96.2 0.013 2.7E-07 56.6 6.8 52 175-228 24-75 (249)
127 COG0572 Udk Uridine kinase [Nu 96.2 0.012 2.6E-07 55.8 6.3 24 204-227 7-30 (218)
128 PRK12377 putative replication 96.1 0.015 3.3E-07 57.3 7.3 72 205-293 101-172 (248)
129 PRK10787 DNA-binding ATP-depen 96.1 0.0088 1.9E-07 69.2 6.5 51 177-227 321-371 (784)
130 PRK10865 protein disaggregatio 96.1 0.017 3.6E-07 68.0 8.8 45 178-228 178-222 (857)
131 PRK14949 DNA polymerase III su 96.1 0.018 4E-07 65.8 8.6 46 178-228 16-61 (944)
132 PTZ00301 uridine kinase; Provi 96.1 0.011 2.5E-07 56.7 6.1 23 205-227 3-25 (210)
133 TIGR03346 chaperone_ClpB ATP-d 96.1 0.02 4.3E-07 67.6 9.3 45 178-228 173-217 (852)
134 cd01394 radB RadB. The archaea 96.1 0.049 1.1E-06 53.1 10.6 87 204-294 18-113 (218)
135 PRK05564 DNA polymerase III su 96.1 0.028 6.1E-07 58.2 9.3 69 178-251 4-77 (313)
136 PRK14958 DNA polymerase III su 96.0 0.11 2.5E-06 57.1 14.3 45 178-227 16-60 (509)
137 PF00308 Bac_DnaA: Bacterial d 96.0 0.055 1.2E-06 52.6 10.5 97 179-294 10-107 (219)
138 PF00448 SRP54: SRP54-type pro 96.0 0.027 5.8E-07 53.6 8.1 56 206-263 2-58 (196)
139 PRK03992 proteasome-activating 96.0 0.014 3E-07 62.3 6.8 53 176-228 129-188 (389)
140 PF00485 PRK: Phosphoribulokin 96.0 0.024 5.1E-07 54.2 7.7 77 207-285 1-84 (194)
141 PRK15455 PrkA family serine pr 96.0 0.0049 1.1E-07 66.6 3.2 49 179-227 77-125 (644)
142 cd01393 recA_like RecA is a b 95.9 0.042 9.1E-07 54.0 9.4 88 204-294 18-124 (226)
143 PRK08903 DnaA regulatory inact 95.9 0.02 4.3E-07 56.3 7.0 25 204-228 41-65 (227)
144 PF05659 RPW8: Arabidopsis bro 95.9 0.15 3.2E-06 45.6 11.8 83 2-84 3-86 (147)
145 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.05 1.1E-06 53.8 9.8 91 204-295 18-126 (235)
146 COG2255 RuvB Holliday junction 95.9 0.0074 1.6E-07 58.7 3.6 51 178-229 26-76 (332)
147 COG0542 clpA ATP-binding subun 95.9 0.19 4.1E-06 57.0 15.0 105 178-294 491-603 (786)
148 PRK05896 DNA polymerase III su 95.8 0.16 3.4E-06 56.4 14.0 47 177-228 15-61 (605)
149 PRK14962 DNA polymerase III su 95.8 0.036 7.8E-07 60.3 9.1 46 178-228 14-59 (472)
150 PRK00440 rfc replication facto 95.8 0.044 9.5E-07 57.1 9.6 45 178-228 17-61 (319)
151 PRK07952 DNA replication prote 95.8 0.047 1E-06 53.7 8.9 73 205-293 99-171 (244)
152 PRK08233 hypothetical protein; 95.8 0.028 6.1E-07 53.0 7.2 24 205-228 3-26 (182)
153 TIGR03689 pup_AAA proteasome A 95.8 0.05 1.1E-06 59.3 9.8 52 177-228 181-239 (512)
154 PRK11034 clpA ATP-dependent Cl 95.8 0.028 6E-07 64.7 8.3 45 178-228 186-230 (758)
155 cd02025 PanK Pantothenate kina 95.7 0.034 7.5E-07 54.0 7.8 22 207-228 1-22 (220)
156 PRK14956 DNA polymerase III su 95.7 0.13 2.9E-06 55.2 12.6 47 177-228 17-63 (484)
157 TIGR02238 recomb_DMC1 meiotic 95.7 0.075 1.6E-06 54.5 10.4 90 204-294 95-201 (313)
158 PRK12724 flagellar biosynthesi 95.7 0.041 8.8E-07 57.9 8.4 25 204-228 222-246 (432)
159 PRK07667 uridine kinase; Provi 95.7 0.023 5.1E-07 54.1 6.2 38 187-228 3-40 (193)
160 PRK05439 pantothenate kinase; 95.6 0.066 1.4E-06 54.5 9.6 79 203-285 84-166 (311)
161 PF12061 DUF3542: Protein of u 95.6 0.029 6.3E-07 55.0 6.6 76 5-84 297-373 (402)
162 PRK12727 flagellar biosynthesi 95.6 0.057 1.2E-06 58.4 9.4 25 204-228 349-373 (559)
163 PRK14951 DNA polymerase III su 95.6 0.095 2.1E-06 58.7 11.4 45 178-227 16-60 (618)
164 PRK14964 DNA polymerase III su 95.6 0.24 5.1E-06 53.9 14.0 46 177-227 12-57 (491)
165 PRK08691 DNA polymerase III su 95.6 0.043 9.3E-07 61.4 8.5 45 178-227 16-60 (709)
166 TIGR00554 panK_bact pantothena 95.6 0.06 1.3E-06 54.4 8.9 80 203-284 60-141 (290)
167 PRK08939 primosomal protein Dn 95.6 0.046 1E-06 55.9 8.2 92 182-293 135-226 (306)
168 PF08423 Rad51: Rad51; InterP 95.6 0.07 1.5E-06 53.2 9.3 96 204-301 37-149 (256)
169 PRK05642 DNA replication initi 95.5 0.073 1.6E-06 52.4 9.2 38 205-244 45-82 (234)
170 PRK07003 DNA polymerase III su 95.5 0.33 7.3E-06 54.8 15.0 45 178-227 16-60 (830)
171 cd01120 RecA-like_NTPases RecA 95.5 0.075 1.6E-06 48.9 8.9 40 207-248 1-40 (165)
172 PRK07994 DNA polymerase III su 95.5 0.045 9.7E-07 61.4 8.4 47 177-228 15-61 (647)
173 PRK14088 dnaA chromosomal repl 95.5 0.036 7.8E-07 60.0 7.4 73 205-294 130-204 (440)
174 PRK06921 hypothetical protein; 95.4 0.057 1.2E-06 54.1 8.2 37 205-243 117-154 (266)
175 PRK05703 flhF flagellar biosyn 95.4 0.061 1.3E-06 57.8 8.9 39 205-243 221-259 (424)
176 KOG2739 Leucine-rich acidic nu 95.4 0.0083 1.8E-07 57.7 2.1 65 401-466 35-101 (260)
177 PRK09270 nucleoside triphospha 95.4 0.06 1.3E-06 52.9 8.2 26 203-228 31-56 (229)
178 PRK11889 flhF flagellar biosyn 95.4 0.058 1.3E-06 56.0 8.2 25 204-228 240-264 (436)
179 PRK14722 flhF flagellar biosyn 95.4 0.056 1.2E-06 56.4 8.2 87 204-293 136-224 (374)
180 PLN03186 DNA repair protein RA 95.4 0.12 2.5E-06 53.7 10.5 95 204-300 122-233 (342)
181 PRK14969 DNA polymerase III su 95.4 0.066 1.4E-06 59.3 9.2 45 178-227 16-60 (527)
182 TIGR00959 ffh signal recogniti 95.3 0.12 2.5E-06 55.4 10.6 25 204-228 98-122 (428)
183 PRK10867 signal recognition pa 95.3 0.094 2E-06 56.1 9.9 24 204-227 99-122 (433)
184 TIGR00362 DnaA chromosomal rep 95.3 0.087 1.9E-06 56.8 9.8 72 205-294 136-209 (405)
185 PTZ00361 26 proteosome regulat 95.3 0.03 6.5E-07 60.0 6.1 52 177-228 182-240 (438)
186 PRK08084 DNA replication initi 95.3 0.067 1.5E-06 52.7 8.2 39 205-245 45-83 (235)
187 PRK05480 uridine/cytidine kina 95.3 0.014 3E-07 56.6 3.3 25 204-228 5-29 (209)
188 CHL00095 clpC Clp protease ATP 95.3 1 2.2E-05 53.3 19.2 50 178-227 509-561 (821)
189 cd01135 V_A-ATPase_B V/A-type 95.3 0.1 2.3E-06 51.7 9.3 89 206-294 70-176 (276)
190 TIGR02012 tigrfam_recA protein 95.2 0.058 1.2E-06 55.2 7.6 85 203-294 53-143 (321)
191 TIGR02239 recomb_RAD51 DNA rep 95.2 0.14 3.1E-06 52.6 10.6 95 203-299 94-205 (316)
192 COG1618 Predicted nucleotide k 95.2 0.021 4.6E-07 50.7 3.6 24 205-228 5-28 (179)
193 cd00983 recA RecA is a bacter 95.2 0.066 1.4E-06 54.8 7.8 84 204-294 54-143 (325)
194 PF13238 AAA_18: AAA domain; P 95.2 0.013 2.8E-07 51.6 2.4 21 208-228 1-21 (129)
195 PLN03187 meiotic recombination 95.2 0.16 3.4E-06 52.7 10.6 90 204-294 125-231 (344)
196 PRK12323 DNA polymerase III su 95.1 0.36 7.8E-06 53.7 13.7 45 178-227 16-60 (700)
197 TIGR00064 ftsY signal recognit 95.1 0.13 2.8E-06 51.8 9.7 38 204-243 71-108 (272)
198 PRK06645 DNA polymerase III su 95.1 0.085 1.8E-06 57.8 9.0 46 178-228 21-66 (507)
199 KOG2123 Uncharacterized conser 95.1 0.0016 3.5E-08 62.7 -3.7 83 407-493 17-101 (388)
200 PRK00149 dnaA chromosomal repl 95.1 0.13 2.8E-06 56.3 10.5 73 204-294 147-221 (450)
201 PRK04301 radA DNA repair and r 95.1 0.19 4.1E-06 52.1 11.2 90 204-294 101-208 (317)
202 TIGR00235 udk uridine kinase. 95.1 0.017 3.6E-07 55.9 3.2 25 204-228 5-29 (207)
203 PRK00889 adenylylsulfate kinas 95.1 0.075 1.6E-06 49.8 7.4 25 204-228 3-27 (175)
204 PRK12422 chromosomal replicati 95.0 0.066 1.4E-06 57.9 7.8 71 205-293 141-211 (445)
205 PRK09183 transposase/IS protei 95.0 0.13 2.8E-06 51.5 9.3 23 206-228 103-125 (259)
206 CHL00181 cbbX CbbX; Provisiona 95.0 0.15 3.3E-06 51.7 9.9 22 207-228 61-82 (287)
207 PRK12402 replication factor C 95.0 0.025 5.3E-07 59.5 4.3 45 178-228 15-59 (337)
208 cd02028 UMPK_like Uridine mono 95.0 0.037 8.1E-07 51.9 5.0 22 207-228 1-22 (179)
209 COG1419 FlhF Flagellar GTP-bin 95.0 0.084 1.8E-06 54.8 7.8 82 204-287 202-285 (407)
210 PRK06526 transposase; Provisio 94.9 0.051 1.1E-06 54.0 6.2 24 205-228 98-121 (254)
211 PRK12597 F0F1 ATP synthase sub 94.9 0.093 2E-06 56.3 8.4 89 205-294 143-247 (461)
212 COG4608 AppF ABC-type oligopep 94.9 0.1 2.3E-06 51.0 8.0 89 204-295 38-138 (268)
213 COG0468 RecA RecA/RadA recombi 94.9 0.16 3.5E-06 50.7 9.5 90 203-294 58-151 (279)
214 PRK10865 protein disaggregatio 94.9 0.078 1.7E-06 62.5 8.6 50 178-227 568-620 (857)
215 KOG1532 GTPase XAB1, interacts 94.9 0.14 3.1E-06 49.5 8.6 28 203-230 17-44 (366)
216 PRK09354 recA recombinase A; P 94.9 0.085 1.8E-06 54.4 7.8 85 203-294 58-148 (349)
217 COG1484 DnaC DNA replication p 94.9 0.066 1.4E-06 53.2 6.8 73 204-293 104-176 (254)
218 PRK00771 signal recognition pa 94.9 0.19 4.2E-06 53.9 10.7 56 204-262 94-151 (437)
219 PF03205 MobB: Molybdopterin g 94.9 0.04 8.7E-07 49.2 4.7 39 206-245 1-39 (140)
220 cd02019 NK Nucleoside/nucleoti 94.8 0.019 4E-07 44.2 2.2 22 207-228 1-22 (69)
221 PRK06547 hypothetical protein; 94.8 0.036 7.8E-07 51.5 4.5 26 203-228 13-38 (172)
222 PRK10536 hypothetical protein; 94.8 0.14 3.1E-06 50.1 8.6 54 178-239 55-108 (262)
223 PTZ00035 Rad51 protein; Provis 94.8 0.25 5.5E-06 51.3 11.1 94 204-299 117-227 (337)
224 PTZ00454 26S protease regulato 94.8 0.12 2.6E-06 55.0 8.8 53 176-228 143-202 (398)
225 COG3640 CooC CO dehydrogenase 94.8 0.042 9E-07 52.2 4.7 43 207-250 2-44 (255)
226 PRK09087 hypothetical protein; 94.8 0.03 6.5E-07 54.7 4.0 24 205-228 44-67 (226)
227 cd02027 APSK Adenosine 5'-phos 94.7 0.1 2.2E-06 47.3 7.1 22 207-228 1-22 (149)
228 PRK12726 flagellar biosynthesi 94.7 0.15 3.3E-06 52.8 9.0 87 204-292 205-293 (407)
229 COG0593 DnaA ATPase involved i 94.7 0.35 7.5E-06 50.9 11.6 31 204-236 112-142 (408)
230 PRK14952 DNA polymerase III su 94.7 0.12 2.6E-06 57.6 8.8 45 178-227 13-57 (584)
231 KOG3864 Uncharacterized conser 94.7 0.0035 7.6E-08 57.8 -2.6 66 635-706 122-188 (221)
232 PRK14087 dnaA chromosomal repl 94.6 0.079 1.7E-06 57.5 7.2 75 205-293 141-215 (450)
233 KOG1644 U2-associated snRNP A' 94.6 0.028 6.2E-07 51.9 3.1 54 411-466 44-98 (233)
234 PRK14970 DNA polymerase III su 94.6 0.15 3.1E-06 54.3 9.1 47 177-228 16-62 (367)
235 PRK12723 flagellar biosynthesi 94.6 0.15 3.2E-06 53.9 8.7 87 204-293 173-263 (388)
236 TIGR02236 recomb_radA DNA repa 94.5 0.34 7.3E-06 50.1 11.2 56 204-260 94-153 (310)
237 TIGR03346 chaperone_ClpB ATP-d 94.4 0.11 2.5E-06 61.3 8.4 50 178-227 565-617 (852)
238 KOG4579 Leucine-rich repeat (L 94.4 0.0059 1.3E-07 52.6 -1.6 74 400-475 67-141 (177)
239 PF00006 ATP-synt_ab: ATP synt 94.4 0.13 2.8E-06 49.6 7.2 85 206-294 16-115 (215)
240 cd03115 SRP The signal recogni 94.4 0.16 3.4E-06 47.4 7.8 22 207-228 2-23 (173)
241 PRK04296 thymidine kinase; Pro 94.4 0.057 1.2E-06 51.3 4.8 83 206-293 3-87 (190)
242 COG0563 Adk Adenylate kinase a 94.4 0.084 1.8E-06 49.3 5.8 22 207-228 2-23 (178)
243 TIGR01425 SRP54_euk signal rec 94.4 0.31 6.7E-06 51.9 10.6 25 204-228 99-123 (429)
244 PF14516 AAA_35: AAA-like doma 94.3 2 4.3E-05 44.8 16.6 110 176-294 9-137 (331)
245 TIGR02639 ClpA ATP-dependent C 94.3 0.12 2.6E-06 60.1 8.3 63 178-245 454-519 (731)
246 KOG0733 Nuclear AAA ATPase (VC 94.3 0.16 3.5E-06 54.8 8.3 98 177-294 189-292 (802)
247 PRK06762 hypothetical protein; 94.3 0.033 7.2E-07 51.6 2.9 23 206-228 3-25 (166)
248 PF00560 LRR_1: Leucine Rich R 94.3 0.023 4.9E-07 32.4 1.1 19 434-453 2-20 (22)
249 TIGR03345 VI_ClpV1 type VI sec 94.3 0.11 2.3E-06 61.2 7.6 51 177-227 565-618 (852)
250 PRK14086 dnaA chromosomal repl 94.3 1.3 2.9E-05 49.3 15.5 23 206-228 315-337 (617)
251 KOG1969 DNA replication checkp 94.3 0.12 2.6E-06 57.1 7.3 72 202-293 323-396 (877)
252 PRK14723 flhF flagellar biosyn 94.3 0.19 4.1E-06 57.2 9.2 85 205-292 185-271 (767)
253 TIGR02881 spore_V_K stage V sp 94.2 0.055 1.2E-06 54.4 4.6 50 179-228 7-65 (261)
254 PTZ00185 ATPase alpha subunit; 94.2 0.25 5.4E-06 53.1 9.4 90 206-295 190-300 (574)
255 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.23 4.9E-06 53.1 9.2 89 205-294 138-242 (449)
256 KOG0744 AAA+-type ATPase [Post 94.2 0.36 7.9E-06 48.1 9.8 88 205-302 177-268 (423)
257 PRK15453 phosphoribulokinase; 94.2 0.2 4.3E-06 49.8 8.2 78 204-283 4-89 (290)
258 PF13671 AAA_33: AAA domain; P 94.2 0.035 7.5E-07 50.0 2.8 21 207-227 1-21 (143)
259 PF08298 AAA_PrkA: PrkA AAA do 94.2 0.056 1.2E-06 55.1 4.4 51 177-227 60-110 (358)
260 PRK09280 F0F1 ATP synthase sub 94.2 0.2 4.2E-06 53.8 8.7 89 205-294 144-248 (463)
261 PRK06995 flhF flagellar biosyn 94.2 0.18 3.9E-06 54.5 8.5 56 205-261 256-313 (484)
262 TIGR01360 aden_kin_iso1 adenyl 94.2 0.036 7.8E-07 52.6 3.0 24 204-227 2-25 (188)
263 PF07726 AAA_3: ATPase family 94.2 0.035 7.6E-07 47.8 2.5 27 208-236 2-28 (131)
264 cd02023 UMPK Uridine monophosp 94.2 0.028 6.1E-07 53.9 2.2 22 207-228 1-22 (198)
265 PTZ00088 adenylate kinase 1; P 94.2 0.067 1.4E-06 52.2 4.8 21 208-228 9-29 (229)
266 PRK14721 flhF flagellar biosyn 94.1 0.25 5.4E-06 52.6 9.4 25 204-228 190-214 (420)
267 cd02024 NRK1 Nicotinamide ribo 94.1 0.029 6.2E-07 52.7 2.2 22 207-228 1-22 (187)
268 PRK08972 fliI flagellum-specif 94.1 0.17 3.7E-06 53.7 8.1 86 205-294 162-262 (444)
269 PRK03839 putative kinase; Prov 94.1 0.035 7.6E-07 52.3 2.8 22 207-228 2-23 (180)
270 PRK10751 molybdopterin-guanine 94.1 0.05 1.1E-06 50.2 3.6 25 204-228 5-29 (173)
271 PRK03846 adenylylsulfate kinas 94.1 0.15 3.2E-06 48.8 7.1 26 203-228 22-47 (198)
272 PRK08149 ATP synthase SpaL; Va 94.1 0.21 4.6E-06 53.1 8.7 86 205-294 151-251 (428)
273 COG1222 RPT1 ATP-dependent 26S 94.1 0.75 1.6E-05 46.8 11.9 130 175-328 148-285 (406)
274 PRK13531 regulatory ATPase Rav 94.0 0.07 1.5E-06 57.2 5.0 42 179-228 21-62 (498)
275 TIGR00041 DTMP_kinase thymidyl 94.0 0.32 6.9E-06 46.4 9.3 24 206-229 4-27 (195)
276 PRK09111 DNA polymerase III su 94.0 0.19 4.2E-06 56.3 8.7 47 177-228 23-69 (598)
277 TIGR01040 V-ATPase_V1_B V-type 94.0 0.21 4.7E-06 53.1 8.5 89 206-294 142-257 (466)
278 PRK14959 DNA polymerase III su 94.0 0.96 2.1E-05 50.6 13.9 46 178-228 16-61 (624)
279 PRK04040 adenylate kinase; Pro 94.0 0.039 8.4E-07 52.2 2.8 23 206-228 3-25 (188)
280 PF00154 RecA: recA bacterial 94.0 0.075 1.6E-06 54.2 4.9 85 203-294 51-141 (322)
281 PHA00729 NTP-binding motif con 94.0 0.068 1.5E-06 51.4 4.4 25 204-228 16-40 (226)
282 PF13504 LRR_7: Leucine rich r 93.9 0.035 7.5E-07 29.3 1.3 16 410-425 2-17 (17)
283 PRK14974 cell division protein 93.9 0.32 6.9E-06 50.3 9.4 24 204-227 139-162 (336)
284 PRK08927 fliI flagellum-specif 93.9 0.23 4.9E-06 53.0 8.5 86 205-294 158-258 (442)
285 PRK07940 DNA polymerase III su 93.9 0.23 4.9E-06 52.8 8.6 50 178-227 5-58 (394)
286 TIGR00390 hslU ATP-dependent p 93.9 0.15 3.3E-06 53.5 7.1 80 178-259 12-103 (441)
287 PF01695 IstB_IS21: IstB-like 93.9 0.089 1.9E-06 49.2 4.9 36 205-242 47-82 (178)
288 COG1428 Deoxynucleoside kinase 93.9 0.04 8.7E-07 51.6 2.5 26 205-230 4-29 (216)
289 COG2019 AdkA Archaeal adenylat 93.8 0.051 1.1E-06 48.6 3.0 24 204-227 3-26 (189)
290 PRK00625 shikimate kinase; Pro 93.8 0.042 9.1E-07 51.1 2.6 22 207-228 2-23 (173)
291 COG1223 Predicted ATPase (AAA+ 93.8 0.061 1.3E-06 51.6 3.6 54 177-230 120-176 (368)
292 PRK06067 flagellar accessory p 93.8 0.39 8.4E-06 47.4 9.6 86 204-294 24-130 (234)
293 PRK14950 DNA polymerase III su 93.8 0.16 3.4E-06 57.4 7.6 46 178-228 16-61 (585)
294 PRK06002 fliI flagellum-specif 93.8 0.22 4.8E-06 53.1 8.2 87 205-294 165-264 (450)
295 COG0003 ArsA Predicted ATPase 93.8 0.1 2.2E-06 53.4 5.4 49 205-255 2-50 (322)
296 PLN02924 thymidylate kinase 93.8 0.44 9.5E-06 46.3 9.6 55 204-259 15-69 (220)
297 PF03193 DUF258: Protein of un 93.7 0.084 1.8E-06 47.9 4.2 36 185-229 24-59 (161)
298 PF08433 KTI12: Chromatin asso 93.7 0.059 1.3E-06 53.9 3.6 23 206-228 2-24 (270)
299 CHL00176 ftsH cell division pr 93.7 0.12 2.5E-06 58.5 6.3 52 177-228 182-239 (638)
300 PLN02348 phosphoribulokinase 93.7 0.32 6.9E-06 50.8 9.0 26 203-228 47-72 (395)
301 cd02029 PRK_like Phosphoribulo 93.7 0.16 3.4E-06 50.1 6.4 77 207-285 1-85 (277)
302 TIGR02322 phosphon_PhnN phosph 93.7 0.047 1E-06 51.4 2.8 23 206-228 2-24 (179)
303 PRK14965 DNA polymerase III su 93.7 1.3 2.7E-05 50.0 14.4 47 177-228 15-61 (576)
304 PF00158 Sigma54_activat: Sigm 93.7 0.22 4.7E-06 46.1 7.1 73 180-259 1-73 (168)
305 PRK14953 DNA polymerase III su 93.7 0.32 7E-06 53.2 9.5 45 178-227 16-60 (486)
306 TIGR00150 HI0065_YjeE ATPase, 93.6 0.094 2E-06 46.0 4.3 41 185-229 6-46 (133)
307 PF07728 AAA_5: AAA domain (dy 93.6 0.14 3E-06 45.8 5.5 43 208-255 2-44 (139)
308 PLN00020 ribulose bisphosphate 93.5 0.23 5.1E-06 51.1 7.5 26 203-228 146-171 (413)
309 PRK10416 signal recognition pa 93.5 0.69 1.5E-05 47.7 11.0 25 204-228 113-137 (318)
310 TIGR00176 mobB molybdopterin-g 93.5 0.081 1.7E-06 48.2 3.8 33 207-240 1-33 (155)
311 TIGR01243 CDC48 AAA family ATP 93.5 0.14 3.1E-06 59.7 6.7 52 177-228 177-235 (733)
312 cd01878 HflX HflX subfamily. 93.5 0.12 2.7E-06 49.7 5.3 26 204-229 40-65 (204)
313 TIGR03263 guanyl_kin guanylate 93.5 0.055 1.2E-06 50.9 2.8 23 206-228 2-24 (180)
314 PRK07594 type III secretion sy 93.4 0.29 6.4E-06 52.1 8.4 86 205-294 155-255 (433)
315 cd03222 ABC_RNaseL_inhibitor T 93.4 0.3 6.6E-06 45.5 7.6 24 205-228 25-48 (177)
316 TIGR03877 thermo_KaiC_1 KaiC d 93.4 0.61 1.3E-05 46.0 10.2 49 204-256 20-68 (237)
317 PRK06936 type III secretion sy 93.4 0.33 7.1E-06 51.8 8.6 86 205-294 162-262 (439)
318 PRK07764 DNA polymerase III su 93.4 0.29 6.3E-06 57.0 8.9 46 178-228 15-60 (824)
319 PRK06217 hypothetical protein; 93.4 0.052 1.1E-06 51.2 2.5 23 207-229 3-25 (183)
320 PF01583 APS_kinase: Adenylyls 93.4 0.12 2.5E-06 46.8 4.6 34 206-241 3-36 (156)
321 PRK12678 transcription termina 93.3 0.21 4.5E-06 54.3 7.0 88 206-294 417-513 (672)
322 cd04159 Arl10_like Arl10-like 93.3 0.41 8.8E-06 43.4 8.4 21 208-228 2-22 (159)
323 KOG1644 U2-associated snRNP A' 93.3 0.083 1.8E-06 49.0 3.4 54 433-489 43-97 (233)
324 PRK00131 aroK shikimate kinase 93.2 0.062 1.3E-06 50.2 2.8 25 204-228 3-27 (175)
325 KOG0734 AAA+-type ATPase conta 93.2 0.53 1.2E-05 50.2 9.6 55 177-231 303-363 (752)
326 TIGR03574 selen_PSTK L-seryl-t 93.2 0.26 5.5E-06 49.2 7.2 22 207-228 1-22 (249)
327 PRK05342 clpX ATP-dependent pr 93.2 0.25 5.4E-06 52.8 7.4 50 178-227 71-130 (412)
328 TIGR01359 UMP_CMP_kin_fam UMP- 93.2 0.053 1.1E-06 51.2 2.2 22 207-228 1-22 (183)
329 PRK11034 clpA ATP-dependent Cl 93.1 0.27 5.8E-06 56.8 8.1 50 179-228 459-511 (758)
330 KOG0735 AAA+-type ATPase [Post 93.1 0.21 4.5E-06 55.0 6.7 72 205-294 431-504 (952)
331 TIGR01241 FtsH_fam ATP-depende 93.1 0.28 6.1E-06 54.3 8.1 52 177-228 54-111 (495)
332 cd02020 CMPK Cytidine monophos 93.1 0.056 1.2E-06 48.8 2.2 22 207-228 1-22 (147)
333 PF02562 PhoH: PhoH-like prote 93.1 0.094 2E-06 49.8 3.7 53 182-242 4-56 (205)
334 PF06309 Torsin: Torsin; Inte 93.1 0.14 3E-06 44.1 4.3 51 178-228 25-76 (127)
335 PF00910 RNA_helicase: RNA hel 93.1 0.053 1.1E-06 46.0 1.8 21 208-228 1-21 (107)
336 COG0542 clpA ATP-binding subun 93.1 0.15 3.3E-06 57.8 5.8 44 178-227 170-213 (786)
337 PF08477 Miro: Miro-like prote 93.0 0.068 1.5E-06 46.2 2.5 23 208-230 2-24 (119)
338 PF00625 Guanylate_kin: Guanyl 93.0 0.11 2.3E-06 49.1 4.0 37 205-243 2-38 (183)
339 COG1936 Predicted nucleotide k 93.0 0.07 1.5E-06 48.2 2.5 20 207-226 2-21 (180)
340 COG0125 Tmk Thymidylate kinase 93.0 0.65 1.4E-05 44.4 9.2 51 205-257 3-53 (208)
341 PRK08006 replicative DNA helic 93.0 13 0.00029 40.6 20.5 55 204-261 223-277 (471)
342 PRK13947 shikimate kinase; Pro 93.0 0.068 1.5E-06 49.8 2.6 22 207-228 3-24 (171)
343 TIGR02880 cbbX_cfxQ probable R 93.0 0.27 5.9E-06 49.9 7.1 22 207-228 60-81 (284)
344 TIGR00073 hypB hydrogenase acc 93.0 0.079 1.7E-06 51.1 3.1 27 202-228 19-45 (207)
345 PLN02796 D-glycerate 3-kinase 93.0 0.53 1.2E-05 48.4 9.1 25 204-228 99-123 (347)
346 KOG2228 Origin recognition com 93.0 0.44 9.6E-06 47.9 8.1 66 178-247 24-89 (408)
347 cd01672 TMPK Thymidine monopho 92.9 0.2 4.4E-06 47.9 5.9 22 207-228 2-23 (200)
348 PRK08181 transposase; Validate 92.9 0.38 8.3E-06 48.1 7.9 44 206-257 107-150 (269)
349 PRK06835 DNA replication prote 92.9 0.13 2.7E-06 53.2 4.6 36 206-243 184-219 (329)
350 PTZ00494 tuzin-like protein; P 92.9 7.7 0.00017 41.1 17.1 82 174-266 367-448 (664)
351 PF07724 AAA_2: AAA domain (Cd 92.9 0.1 2.2E-06 48.4 3.6 43 204-248 2-45 (171)
352 cd00227 CPT Chloramphenicol (C 92.9 0.071 1.5E-06 49.9 2.6 23 206-228 3-25 (175)
353 PRK00300 gmk guanylate kinase; 92.9 0.071 1.5E-06 51.4 2.7 25 204-228 4-28 (205)
354 TIGR01039 atpD ATP synthase, F 92.9 0.5 1.1E-05 50.6 9.1 89 205-294 143-247 (461)
355 PF02374 ArsA_ATPase: Anion-tr 92.9 0.13 2.7E-06 52.8 4.6 45 206-252 2-46 (305)
356 COG2607 Predicted ATPase (AAA+ 92.9 0.84 1.8E-05 43.7 9.5 49 178-228 60-108 (287)
357 PRK13949 shikimate kinase; Pro 92.8 0.071 1.5E-06 49.5 2.5 22 207-228 3-24 (169)
358 PLN02318 phosphoribulokinase/u 92.8 0.12 2.6E-06 56.5 4.5 26 203-228 63-88 (656)
359 KOG2739 Leucine-rich acidic nu 92.8 0.059 1.3E-06 52.1 1.9 84 407-491 63-154 (260)
360 PRK13236 nitrogenase reductase 92.8 0.13 2.9E-06 52.6 4.7 26 202-227 3-28 (296)
361 PRK08760 replicative DNA helic 92.8 7.5 0.00016 42.7 18.4 54 204-260 228-281 (476)
362 PRK10078 ribose 1,5-bisphospho 92.8 0.081 1.7E-06 50.1 2.8 23 206-228 3-25 (186)
363 cd01132 F1_ATPase_alpha F1 ATP 92.7 0.58 1.3E-05 46.5 8.7 85 206-294 70-171 (274)
364 PF13504 LRR_7: Leucine rich r 92.7 0.061 1.3E-06 28.4 1.1 17 670-687 1-17 (17)
365 cd02021 GntK Gluconate kinase 92.7 0.071 1.5E-06 48.4 2.2 22 207-228 1-22 (150)
366 TIGR01041 ATP_syn_B_arch ATP s 92.7 0.56 1.2E-05 50.5 9.2 89 206-294 142-248 (458)
367 PRK05201 hslU ATP-dependent pr 92.7 0.3 6.4E-06 51.5 6.9 52 177-228 14-73 (443)
368 COG1124 DppF ABC-type dipeptid 92.7 0.12 2.7E-06 49.5 3.8 23 205-227 33-55 (252)
369 COG0194 Gmk Guanylate kinase [ 92.7 0.16 3.4E-06 46.8 4.3 25 205-229 4-28 (191)
370 TIGR01287 nifH nitrogenase iro 92.6 0.075 1.6E-06 53.9 2.6 23 206-228 1-23 (275)
371 cd00071 GMPK Guanosine monopho 92.6 0.077 1.7E-06 47.3 2.3 22 207-228 1-22 (137)
372 PRK06793 fliI flagellum-specif 92.6 0.38 8.3E-06 51.3 7.8 86 205-294 156-256 (432)
373 COG1763 MobB Molybdopterin-gua 92.6 0.16 3.4E-06 46.2 4.3 24 205-228 2-25 (161)
374 COG4088 Predicted nucleotide k 92.6 0.065 1.4E-06 49.7 1.8 22 206-227 2-23 (261)
375 KOG0991 Replication factor C, 92.6 0.13 2.7E-06 48.7 3.7 45 177-227 26-70 (333)
376 PRK14955 DNA polymerase III su 92.6 0.14 3E-06 54.9 4.6 45 178-227 16-60 (397)
377 PRK14948 DNA polymerase III su 92.6 0.51 1.1E-05 53.4 9.1 46 178-228 16-61 (620)
378 COG0470 HolB ATPase involved i 92.5 0.65 1.4E-05 48.4 9.6 46 179-228 2-47 (325)
379 TIGR03575 selen_PSTK_euk L-ser 92.5 0.37 8E-06 49.8 7.4 22 208-229 2-23 (340)
380 cd00820 PEPCK_HprK Phosphoenol 92.5 0.1 2.2E-06 43.7 2.7 22 205-226 15-36 (107)
381 PRK13975 thymidylate kinase; P 92.5 0.09 2E-06 50.3 2.8 23 206-228 3-25 (196)
382 cd01136 ATPase_flagellum-secre 92.5 0.63 1.4E-05 47.8 8.9 86 205-294 69-169 (326)
383 PRK14493 putative bifunctional 92.5 0.15 3.3E-06 51.1 4.4 35 206-243 2-36 (274)
384 KOG1514 Origin recognition com 92.5 0.74 1.6E-05 50.9 9.7 113 177-293 395-517 (767)
385 cd01134 V_A-ATPase_A V/A-type 92.4 0.8 1.7E-05 47.0 9.4 47 206-256 158-205 (369)
386 TIGR03498 FliI_clade3 flagella 92.4 0.41 8.9E-06 51.0 7.8 86 205-294 140-240 (418)
387 cd02117 NifH_like This family 92.4 0.09 2E-06 51.0 2.7 22 206-227 1-22 (212)
388 PRK05057 aroK shikimate kinase 92.4 0.094 2E-06 48.9 2.7 24 205-228 4-27 (172)
389 KOG1947 Leucine rich repeat pr 92.4 0.016 3.5E-07 64.2 -2.9 174 510-711 187-368 (482)
390 TIGR00678 holB DNA polymerase 92.4 0.74 1.6E-05 43.6 8.9 24 205-228 14-37 (188)
391 PRK13768 GTPase; Provisional 92.3 0.18 3.9E-06 50.3 4.8 24 205-228 2-25 (253)
392 PRK14530 adenylate kinase; Pro 92.3 0.09 2E-06 51.1 2.6 22 207-228 5-26 (215)
393 COG1102 Cmk Cytidylate kinase 92.3 0.085 1.8E-06 47.0 2.1 43 207-262 2-44 (179)
394 PF03029 ATP_bind_1: Conserved 92.3 0.13 2.8E-06 50.6 3.7 32 210-243 1-32 (238)
395 PRK13232 nifH nitrogenase redu 92.3 0.094 2E-06 53.1 2.8 22 206-227 2-23 (273)
396 PRK13230 nitrogenase reductase 92.3 0.18 3.9E-06 51.3 4.8 23 206-228 2-24 (279)
397 cd03116 MobB Molybdenum is an 92.3 0.11 2.4E-06 47.4 2.9 23 206-228 2-24 (159)
398 CHL00060 atpB ATP synthase CF1 92.2 0.45 9.7E-06 51.3 7.8 89 205-294 161-272 (494)
399 PF01078 Mg_chelatase: Magnesi 92.2 0.22 4.7E-06 47.1 4.9 42 178-227 3-44 (206)
400 cd00464 SK Shikimate kinase (S 92.2 0.096 2.1E-06 47.8 2.5 21 208-228 2-22 (154)
401 cd01121 Sms Sms (bacterial rad 92.2 0.73 1.6E-05 48.6 9.2 83 204-294 81-168 (372)
402 PRK14738 gmk guanylate kinase; 92.2 0.13 2.7E-06 49.6 3.4 25 204-228 12-36 (206)
403 PRK13948 shikimate kinase; Pro 92.1 0.12 2.6E-06 48.4 3.0 25 204-228 9-33 (182)
404 cd03223 ABCD_peroxisomal_ALDP 92.1 0.6 1.3E-05 43.2 7.7 24 205-228 27-50 (166)
405 cd02040 NifH NifH gene encodes 92.1 0.2 4.4E-06 50.6 4.9 41 206-248 2-42 (270)
406 COG4240 Predicted kinase [Gene 92.1 0.54 1.2E-05 44.4 7.1 82 204-286 49-135 (300)
407 TIGR03878 thermo_KaiC_2 KaiC d 92.1 0.8 1.7E-05 45.8 9.0 40 204-245 35-74 (259)
408 COG0467 RAD55 RecA-superfamily 92.0 0.18 3.9E-06 50.7 4.4 52 203-258 21-72 (260)
409 PRK00698 tmk thymidylate kinas 92.0 0.94 2E-05 43.5 9.3 23 206-228 4-26 (205)
410 TIGR02397 dnaX_nterm DNA polym 92.0 0.2 4.2E-06 53.1 4.9 47 177-228 13-59 (355)
411 PF10662 PduV-EutP: Ethanolami 92.0 0.12 2.6E-06 45.8 2.6 24 206-229 2-25 (143)
412 PRK09099 type III secretion sy 91.9 0.51 1.1E-05 50.6 7.8 87 204-294 162-263 (441)
413 PRK12339 2-phosphoglycerate ki 91.9 0.13 2.9E-06 48.8 3.1 24 205-228 3-26 (197)
414 PRK06761 hypothetical protein; 91.9 0.23 5.1E-06 49.8 4.9 24 206-229 4-27 (282)
415 PF13481 AAA_25: AAA domain; P 91.8 0.67 1.4E-05 44.0 8.0 50 206-257 33-90 (193)
416 TIGR00455 apsK adenylylsulfate 91.8 0.5 1.1E-05 44.6 7.0 25 204-228 17-41 (184)
417 TIGR03496 FliI_clade1 flagella 91.8 0.87 1.9E-05 48.5 9.4 86 205-294 137-237 (411)
418 COG1100 GTPase SAR1 and relate 91.8 0.11 2.4E-06 50.6 2.6 24 206-229 6-29 (219)
419 PRK10463 hydrogenase nickel in 91.8 0.32 6.9E-06 48.8 5.7 27 202-228 101-127 (290)
420 TIGR01313 therm_gnt_kin carboh 91.8 0.097 2.1E-06 48.3 2.0 21 208-228 1-21 (163)
421 PRK05922 type III secretion sy 91.8 0.91 2E-05 48.5 9.3 85 206-294 158-257 (434)
422 PRK13946 shikimate kinase; Pro 91.7 0.12 2.6E-06 48.8 2.6 24 205-228 10-33 (184)
423 COG3267 ExeA Type II secretory 91.7 1.8 4E-05 42.0 10.4 148 186-340 35-210 (269)
424 KOG0729 26S proteasome regulat 91.7 3.5 7.6E-05 40.0 12.1 124 177-328 176-311 (435)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.7 1.5 3.3E-05 39.4 9.6 25 205-229 26-50 (144)
426 PF03308 ArgK: ArgK protein; 91.7 0.25 5.5E-06 48.1 4.7 65 186-254 14-78 (266)
427 cd01122 GP4d_helicase GP4d_hel 91.7 0.91 2E-05 45.9 9.2 54 204-260 29-82 (271)
428 PRK05688 fliI flagellum-specif 91.7 0.99 2.2E-05 48.4 9.6 86 205-294 168-268 (451)
429 PRK07196 fliI flagellum-specif 91.7 0.68 1.5E-05 49.4 8.4 25 204-228 154-178 (434)
430 COG5238 RNA1 Ran GTPase-activa 91.7 0.091 2E-06 50.9 1.6 236 401-648 50-313 (388)
431 PRK13695 putative NTPase; Prov 91.7 0.18 3.9E-06 47.1 3.7 22 207-228 2-23 (174)
432 TIGR00764 lon_rel lon-related 91.6 0.38 8.3E-06 54.3 6.8 75 177-262 17-92 (608)
433 PRK13765 ATP-dependent proteas 91.6 0.31 6.6E-06 55.0 6.0 75 178-262 31-105 (637)
434 PF13521 AAA_28: AAA domain; P 91.6 0.12 2.7E-06 47.6 2.5 21 208-228 2-22 (163)
435 PRK13973 thymidylate kinase; P 91.6 1.4 3.1E-05 42.6 10.0 51 206-258 4-54 (213)
436 COG0703 AroK Shikimate kinase 91.6 0.13 2.8E-06 47.0 2.5 21 207-227 4-24 (172)
437 PRK13235 nifH nitrogenase redu 91.6 0.13 2.8E-06 52.2 2.8 22 206-227 2-23 (274)
438 COG0541 Ffh Signal recognition 91.5 2 4.4E-05 45.1 11.3 74 187-263 79-157 (451)
439 PRK14737 gmk guanylate kinase; 91.5 0.16 3.4E-06 47.9 3.2 25 204-228 3-27 (186)
440 PRK13233 nifH nitrogenase redu 91.5 0.13 2.9E-06 52.1 2.9 22 206-227 3-24 (275)
441 PRK08533 flagellar accessory p 91.5 1.1 2.4E-05 43.9 9.2 49 204-256 23-71 (230)
442 KOG3864 Uncharacterized conser 91.4 0.024 5.1E-07 52.4 -2.4 77 563-652 114-190 (221)
443 PRK06620 hypothetical protein; 91.4 0.14 3E-06 49.6 2.7 23 206-228 45-67 (214)
444 PF00005 ABC_tran: ABC transpo 91.4 0.14 3.1E-06 45.6 2.6 23 206-228 12-34 (137)
445 CHL00081 chlI Mg-protoporyphyr 91.4 0.19 4.2E-06 52.1 3.9 47 175-227 14-60 (350)
446 cd00544 CobU Adenosylcobinamid 91.4 0.63 1.4E-05 43.1 6.9 45 208-258 2-46 (169)
447 PRK09519 recA DNA recombinatio 91.4 0.55 1.2E-05 53.8 7.7 87 204-298 59-151 (790)
448 cd04139 RalA_RalB RalA/RalB su 91.4 0.14 3E-06 47.1 2.6 23 207-229 2-24 (164)
449 PRK14971 DNA polymerase III su 91.4 0.85 1.8E-05 51.6 9.3 45 178-227 17-61 (614)
450 COG1703 ArgK Putative periplas 91.4 0.24 5.2E-06 49.1 4.2 65 187-255 37-101 (323)
451 cd01983 Fer4_NifH The Fer4_Nif 91.3 0.14 3E-06 42.2 2.3 22 207-228 1-22 (99)
452 TIGR02016 BchX chlorophyllide 91.3 0.23 5.1E-06 50.7 4.4 40 206-247 1-40 (296)
453 TIGR02030 BchI-ChlI magnesium 91.3 0.24 5.2E-06 51.3 4.5 44 178-227 4-47 (337)
454 TIGR00750 lao LAO/AO transport 91.3 0.34 7.3E-06 49.8 5.6 26 203-228 32-57 (300)
455 PF01926 MMR_HSR1: 50S ribosom 91.3 0.15 3.3E-06 43.8 2.6 21 208-228 2-22 (116)
456 TIGR03881 KaiC_arch_4 KaiC dom 91.3 1.3 2.9E-05 43.4 9.6 41 204-246 19-59 (229)
457 PRK04182 cytidylate kinase; Pr 91.3 0.15 3.2E-06 47.9 2.7 22 207-228 2-23 (180)
458 PRK09825 idnK D-gluconate kina 91.2 0.15 3.3E-06 47.6 2.7 23 206-228 4-26 (176)
459 PRK06820 type III secretion sy 91.2 1.3 2.8E-05 47.5 9.9 37 206-246 164-200 (440)
460 PRK13231 nitrogenase reductase 91.2 0.16 3.4E-06 51.2 3.0 24 205-228 2-25 (264)
461 TIGR02640 gas_vesic_GvpN gas v 91.1 0.49 1.1E-05 47.5 6.4 42 207-253 23-64 (262)
462 cd04155 Arl3 Arl3 subfamily. 91.1 0.17 3.7E-06 47.1 2.9 25 204-228 13-37 (173)
463 KOG0727 26S proteasome regulat 91.1 0.55 1.2E-05 44.9 6.1 129 176-328 153-289 (408)
464 PRK07933 thymidylate kinase; V 91.1 0.9 2E-05 43.9 8.0 24 207-230 2-25 (213)
465 PRK02118 V-type ATP synthase s 91.1 2 4.3E-05 45.9 10.9 85 206-294 141-241 (436)
466 KOG0738 AAA+-type ATPase [Post 91.0 0.99 2.1E-05 46.3 8.2 124 179-328 213-343 (491)
467 cd03114 ArgK-like The function 91.0 0.15 3.3E-06 46.1 2.4 22 207-228 1-22 (148)
468 KOG0739 AAA+-type ATPase [Post 91.0 18 0.00039 36.1 17.1 124 178-328 133-263 (439)
469 COG0464 SpoVK ATPases of the A 91.0 1 2.2E-05 50.1 9.4 97 178-294 242-345 (494)
470 PRK07721 fliI flagellum-specif 90.9 0.5 1.1E-05 50.8 6.5 25 204-228 157-181 (438)
471 PRK08099 bifunctional DNA-bind 90.9 0.15 3.3E-06 54.2 2.6 26 203-228 217-242 (399)
472 TIGR02173 cyt_kin_arch cytidyl 90.9 0.17 3.7E-06 47.1 2.7 21 207-227 2-22 (171)
473 COG0237 CoaE Dephospho-CoA kin 90.9 0.18 4E-06 47.9 2.9 23 205-227 2-24 (201)
474 PRK14527 adenylate kinase; Pro 90.9 0.18 3.9E-06 48.0 2.9 25 204-228 5-29 (191)
475 PRK08472 fliI flagellum-specif 90.9 0.92 2E-05 48.5 8.3 40 205-248 157-196 (434)
476 PRK13976 thymidylate kinase; P 90.8 1 2.2E-05 43.4 8.0 22 207-228 2-23 (209)
477 PRK05800 cobU adenosylcobinami 90.8 0.65 1.4E-05 43.0 6.4 81 207-294 3-86 (170)
478 COG0714 MoxR-like ATPases [Gen 90.8 0.45 9.8E-06 49.6 6.1 64 179-255 25-88 (329)
479 PRK03731 aroL shikimate kinase 90.8 0.16 3.6E-06 47.2 2.5 23 206-228 3-25 (171)
480 PLN02200 adenylate kinase fami 90.8 0.2 4.3E-06 49.2 3.1 24 204-227 42-65 (234)
481 TIGR03497 FliI_clade2 flagella 90.8 0.91 2E-05 48.5 8.3 87 204-294 136-237 (413)
482 PRK14954 DNA polymerase III su 90.8 0.27 6E-06 55.2 4.6 45 178-227 16-60 (620)
483 PRK04328 hypothetical protein; 90.7 1.1 2.4E-05 44.6 8.4 42 204-247 22-63 (249)
484 PRK05636 replicative DNA helic 90.7 13 0.00028 41.1 17.4 55 204-261 264-318 (505)
485 PRK09112 DNA polymerase III su 90.7 0.36 7.7E-06 50.5 5.1 48 176-228 21-68 (351)
486 TIGR03324 alt_F1F0_F1_al alter 90.7 1.4 3E-05 47.8 9.5 85 206-294 163-264 (497)
487 PLN02165 adenylate isopentenyl 90.7 0.19 4.2E-06 51.3 3.0 25 204-228 42-66 (334)
488 TIGR01243 CDC48 AAA family ATP 90.6 1.3 2.8E-05 51.9 10.1 52 177-228 452-510 (733)
489 PRK09435 membrane ATPase/prote 90.6 0.64 1.4E-05 48.0 6.8 37 188-228 43-79 (332)
490 PRK14490 putative bifunctional 90.6 0.31 6.7E-06 51.7 4.6 32 204-237 4-35 (369)
491 PF03266 NTPase_1: NTPase; In 90.6 0.17 3.8E-06 46.7 2.4 22 208-229 2-23 (168)
492 smart00173 RAS Ras subfamily o 90.5 0.19 4.1E-06 46.3 2.6 22 207-228 2-23 (164)
493 cd04163 Era Era subfamily. Er 90.5 0.22 4.7E-06 45.7 3.1 24 205-228 3-26 (168)
494 cd01862 Rab7 Rab7 subfamily. 90.5 0.19 4.2E-06 46.6 2.7 22 207-228 2-23 (172)
495 PLN03046 D-glycerate 3-kinase; 90.5 1.7 3.6E-05 45.9 9.5 24 204-227 211-234 (460)
496 TIGR01281 DPOR_bchL light-inde 90.4 0.2 4.2E-06 50.7 2.8 21 207-227 2-22 (268)
497 KOG3347 Predicted nucleotide k 90.4 0.18 4E-06 44.2 2.2 23 205-227 7-29 (176)
498 cd03229 ABC_Class3 This class 90.3 0.21 4.6E-06 46.8 2.8 24 205-228 26-49 (178)
499 cd04119 RJL RJL (RabJ-Like) su 90.3 0.2 4.4E-06 46.2 2.6 22 208-229 3-24 (168)
500 cd03225 ABC_cobalt_CbiO_domain 90.3 0.21 4.6E-06 48.3 2.9 24 205-228 27-50 (211)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-64 Score=568.96 Aligned_cols=635 Identities=25% Similarity=0.337 Sum_probs=455.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHhhHHHHHH
Q 039852 2 VDAIVSTILEQLISLAAKEITQHVMLVTGVEKEVKSLTSHLQAIQAVLNDAEEKQVKDKAVRRWLGRLNYASYDIEDVLD 81 (731)
Q Consensus 2 a~~~v~~~~~kl~~~~~~~l~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~lr~~ayd~eD~lD 81 (731)
|++.++..++|+.+ .+.+++....++++++..|+++|..++.+++||+.++.+...+..|.+.+++++|++||.++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667788888 89999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhcccCCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccccccC-C
Q 039852 82 EWITARRQLQIEGGIDDKAYFVCHQKKKNKVCFCFPVSCFGLKQVFLRHDIAVKIKEINEELHDIAAQKDMFDLVKSG-N 160 (731)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~-~ 160 (731)
.|.......+..+.... +....+..... ..+++.+..+..+.+++..+.+....+.....- .
T Consensus 77 ~~~v~~~~~~~~~~l~~----------~~~~~~~~c~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~ 139 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLST----------RSVERQRLCLC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV 139 (889)
T ss_pred HHHHHHHHHHHhHHhhh----------hHHHHHHHhhh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec
Confidence 99988765543330000 00011111111 233444444444444444444444444322110 0
Q ss_pred -CC-CCCCCccccccCcCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchh-hhcccce
Q 039852 161 -KS-SERPRRVQSTSLIDEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVE-VKREFHK 237 (731)
Q Consensus 161 -~~-~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~ 237 (731)
.. ......+++.+.....+ ||.++.++++++.|..++ ..+|+|+||||+||||||+.++|+.. ++.+||.
T Consensus 140 ~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~ 212 (889)
T KOG4658|consen 140 VGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDG 212 (889)
T ss_pred ccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCce
Confidence 01 11112233444444445 999999999999999653 38999999999999999999999988 9999999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHccCCCCCh--hhHHHHHHHHHHHhCCCceEEEehhhHH--------------------
Q 039852 238 ILWACVSETFDEFRIAKAMLEALTGSTSNL--DALQSLLISIDESIAGKRFLLVLDDVML-------------------- 295 (731)
Q Consensus 238 ~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~--~~~~~~~~~l~~~l~~kr~llvlDdvw~-------------------- 295 (731)
++||+||+.|+...++.+|+..++...... ...++++..+.+.|++|||+|||||||+
T Consensus 213 ~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~Kv 292 (889)
T KOG4658|consen 213 VIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKV 292 (889)
T ss_pred EEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEE
Confidence 999999999999999999999888744333 2347888999999999999999999998
Q ss_pred -------------------------------HHHHHHhcCCCCCcchhhHHHHHHHHHHHcCCCchHHHHHHHHhcCCCC
Q 039852 296 -------------------------------VLFKRLAFFGRSTEKCEKLEQIGQRIARKCKGLPLAVKTVRSLMSSKKT 344 (731)
Q Consensus 296 -------------------------------~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~glPlai~~i~~~l~~~~~ 344 (731)
.||++.||.... ..++.+.++|++|+++|+|+|||++++|+.|+.+.+
T Consensus 293 vlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 293 VLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred EEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 899999987644 344559999999999999999999999999999999
Q ss_pred HHHHHHHHcccccc----cccccccchhhhhhhccCCcHHHHHHHHHhhcccCCC---------------cC--------
Q 039852 345 EEEWKRILNSDLWK----VEEIEKGVLTPLRLSYNDLPSRVKRCFSYCAIFVNRS---------------SL-------- 397 (731)
Q Consensus 345 ~~~w~~~~~~~~~~----~~~~~~~i~~~L~lsy~~L~~~~k~cf~~~~~f~~rs---------------~~-------- 397 (731)
+.+|+++.+...+. .....+.++++|++||++||+++|.||+|||.||+.. |+
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~ 451 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGET 451 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccc
Confidence 99999999865544 2333567999999999999999999999999999900 00
Q ss_pred --------------------------------------------------------------------------------
Q 039852 398 -------------------------------------------------------------------------------- 397 (731)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (731)
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence
Q ss_pred ---------------------------Cccch-hhhhccccccEEeecCCc-cccccccccCCCceeEEeccCCcCcccC
Q 039852 398 ---------------------------TPKIP-RNIEKLVHLRYLNLSGQD-IVQLSETLCELYILEKLDISYCMDLEEL 448 (731)
Q Consensus 398 ---------------------------~~~lp-~~i~~L~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~c~~l~~l 448 (731)
...++ ..|..|++||+|||++|. +..+|++|++|.+||+|++++ +.+..+
T Consensus 532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~L 610 (889)
T KOG4658|consen 532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHL 610 (889)
T ss_pred ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCcccc
Confidence 01111 237779999999999765 789999999999999999999 779999
Q ss_pred cccccCCCCcceeeccCCccccccccccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChh
Q 039852 449 PEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVG 528 (731)
Q Consensus 449 p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~ 528 (731)
|.++++|++|.||++..+..+..+|..+..|.+|+.|.++..... .+...+.++.+|.+|+.+.+.....
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L~~ls~~~~s~----- 680 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHLENLSITISSV----- 680 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-----cchhhHHhhhcccchhhheeecchh-----
Confidence 999999999999999988766666555666999999988765422 2366778888888888877754221
Q ss_pred hhhhccccccccCCc----eEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccc---------hh
Q 039852 529 EAKRLELDKKKYLSY----LRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSL---------LV 595 (731)
Q Consensus 529 ~~~~~~l~~~~~L~~----L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~---------~~ 595 (731)
.....+..+..|.+ +.+..+. .......+..+.+|+.|.+.+|.+......| +.
T Consensus 681 -~~~e~l~~~~~L~~~~~~l~~~~~~------------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 681 -LLLEDLLGMTRLRSLLQSLSIEGCS------------KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred -HhHhhhhhhHHHHHHhHhhhhcccc------------cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 01111222333332 2221111 1233344556677888888777765311112 11
Q ss_pred hc----------ccCCCCCCCCCCcceeeeccccCceEeCccccccc----ccccCccccee-ecccccccccccccccc
Q 039852 596 QK----------LRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVE----IIIAFPKLKSL-LIEDLLELEEWDYGITR 660 (731)
Q Consensus 596 ~~----------L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~----~~~~f~~L~~L-~l~~~~~l~~~~~~~~~ 660 (731)
.+ +..+.+..-.|+|+.|.+..|..++.+.+..-... ....|+++..+ .+.+.+.+..+.....
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l- 826 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL- 826 (889)
T ss_pred HHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc-
Confidence 11 12223334578999999999888776554321100 02356666666 4666655555544433
Q ss_pred ccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccC
Q 039852 661 TGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMC 704 (731)
Q Consensus 661 ~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c 704 (731)
.+++|+.+.+..||+++.+|. +.++.+.+|
T Consensus 827 -------~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 827 -------SFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred -------CccchhheehhcCcccccCcc-------ccccceecc
Confidence 567788999999988887763 455666676
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-46 Score=450.75 Aligned_cols=528 Identities=20% Similarity=0.259 Sum_probs=316.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCC-------CCCCCCCccccccCcCCCccccchhHHHHHHHHHhcCCCCCCCCc
Q 039852 133 AVKIKEINEELHDIAAQKDMFDLVKSGN-------KSSERPRRVQSTSLIDEEEICGRVGERNELLSKMLCESSDQQKGL 205 (731)
Q Consensus 133 ~~~i~~l~~~l~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 205 (731)
..+++++++.+.+++.... +....... ...........++..+.+++|||+..++++..+|.... +++
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----Cce
Confidence 3467788888888766432 11110000 00001111112233456789999999999998885443 369
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe---CCC-----------CC-HHHHHHHHHHHccCCCC-Chhh
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV---SET-----------FD-EFRIAKAMLEALTGSTS-NLDA 269 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~i~~~i~~~~~~~~~-~~~~ 269 (731)
+||+||||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...++++++.++..... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999999 67788998887642 111 11 12345555555433211 1111
Q ss_pred HHHHHHHHHHHhCCCceEEEehhhHH--------------------------------------------------HHHH
Q 039852 270 LQSLLISIDESIAGKRFLLVLDDVML--------------------------------------------------VLFK 299 (731)
Q Consensus 270 ~~~~~~~l~~~l~~kr~llvlDdvw~--------------------------------------------------~lf~ 299 (731)
...+++.++++|+||||||||+ .||+
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFC 361 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHH
Confidence 1456788999999999999976 7999
Q ss_pred HHhcCCCCCcchhhHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCHHHHHHHHcccccccccccccchhhhhhhccCCcH
Q 039852 300 RLAFFGRSTEKCEKLEQIGQRIARKCKGLPLAVKTVRSLMSSKKTEEEWKRILNSDLWKVEEIEKGVLTPLRLSYNDLPS 379 (731)
Q Consensus 300 ~~af~~~~~~~~~~l~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~L~lsy~~L~~ 379 (731)
++||+... .++++.+++++|+++|+|+|||++++|++|+.+ +..+|+.+++..... .+..+..+|++||+.|+.
T Consensus 362 ~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~ 435 (1153)
T PLN03210 362 RSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNN 435 (1153)
T ss_pred HHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCc
Confidence 99997653 245789999999999999999999999999975 689999998864332 234689999999999987
Q ss_pred -HHHHHHHHhhcccC---------------------------CCc----------------------------------C
Q 039852 380 -RVKRCFSYCAIFVN---------------------------RSS----------------------------------L 397 (731)
Q Consensus 380 -~~k~cf~~~~~f~~---------------------------rs~----------------------------------~ 397 (731)
..|.||++++.|+. +++ +
T Consensus 436 ~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l 515 (1153)
T PLN03210 436 KKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFL 515 (1153)
T ss_pred cchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeE
Confidence 59999999999876 011 0
Q ss_pred ----------------------------Cc---cchhhhhcccc-------------------------------ccEEe
Q 039852 398 ----------------------------TP---KIPRNIEKLVH-------------------------------LRYLN 415 (731)
Q Consensus 398 ----------------------------~~---~lp~~i~~L~~-------------------------------Lr~L~ 415 (731)
+. .-+..|.+|.+ ||+|.
T Consensus 516 ~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~ 595 (1153)
T PLN03210 516 VDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLR 595 (1153)
T ss_pred eCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEE
Confidence 00 00111222333 33333
Q ss_pred ecCCcccccc----------------------ccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccc
Q 039852 416 LSGQDIVQLS----------------------ETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMV 473 (731)
Q Consensus 416 L~~~~i~~lp----------------------~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 473 (731)
+.++.+..+| ..+..+.+|+.|+|++|+.+..+|. +..+++|++|++++|..+..+|
T Consensus 596 ~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 596 WDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred ecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc
Confidence 3333333444 3334444444444444444444442 4444444444444444444444
Q ss_pred cccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCC
Q 039852 474 VGIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKE 553 (731)
Q Consensus 474 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 553 (731)
..++++++|+.|.+..+..-. .+..-.++++|+.|.++++........ ...+|+.|+|+.+....
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~--------~Lp~~i~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLE--------ILPTGINLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE 739 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcC--------ccCCcCCCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccc
Confidence 444444444444443322111 000001233344444433322111100 01233444444333200
Q ss_pred CcccCC---------cc-cHHHHhhc--------CCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeee
Q 039852 554 GEETRK---------NE-DDQLLLEA--------LRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHI 615 (731)
Q Consensus 554 ~~~~~~---------~~-~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L 615 (731)
-+.... .. ........ ...+++|+.|++++|.....+|. .++.+++|+.|+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~----------si~~L~~L~~L~L 809 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS----------SIQNLHKLEHLEI 809 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh----------hhhCCCCCCEEEC
Confidence 000000 00 00000000 01134667777766655444554 3567889999999
Q ss_pred ccccCceEeCcccccccccccCcccceeecccccccccccccc----------ccc--cccccccCcccceeeecccccC
Q 039852 616 WGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGI----------TRT--GNTVIDIMPRLSSFEIKWCPKL 683 (731)
Q Consensus 616 ~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~----------~~~--~~~~~~~~p~L~~L~i~~c~~L 683 (731)
++|+.++.+|... .+++|+.|++++|..+..++... ... -+.++..+++|+.|++.+|++|
T Consensus 810 s~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 810 ENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CCCCCcCeeCCCC-------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 9998888887643 57888999998887776654211 100 1224567999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEccCchhHHh
Q 039852 684 KALPDYIHQTTTLKELRILMCGLLKER 710 (731)
Q Consensus 684 ~~lp~~~~~l~~L~~L~l~~c~~L~~~ 710 (731)
+.+|..+..+++|+.+++++|+.|...
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CccCcccccccCCCeeecCCCcccccc
Confidence 999988889999999999999988754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=1e-29 Score=261.46 Aligned_cols=207 Identities=36% Similarity=0.583 Sum_probs=171.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccC
Q 039852 183 RVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTG 262 (731)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~ 262 (731)
||.++++|.++|.... ++.++|+|+||||+||||||+.+|++..++.+|+.++||.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999654 379999999999999999999999987799999999999999999999999999999987
Q ss_pred CCC---ChhhHHHHHHHHHHHhCCCceEEEehhhHH--------------------------------------------
Q 039852 263 STS---NLDALQSLLISIDESIAGKRFLLVLDDVML-------------------------------------------- 295 (731)
Q Consensus 263 ~~~---~~~~~~~~~~~l~~~l~~kr~llvlDdvw~-------------------------------------------- 295 (731)
... ...+.+.....+.+.+.++++|+||||||+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 643 345667788999999999999999999987
Q ss_pred -------HHHHHHhcCCCCCcchhhHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCHHHHHHHHccccccccc---cccc
Q 039852 296 -------VLFKRLAFFGRSTEKCEKLEQIGQRIARKCKGLPLAVKTVRSLMSSKKTEEEWKRILNSDLWKVEE---IEKG 365 (731)
Q Consensus 296 -------~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~~w~~~~~~~~~~~~~---~~~~ 365 (731)
+||.+.++... ....+.+.+.+++|+++|+|+|||++++|++|+.+.+..+|..+++.......+ ....
T Consensus 157 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp --HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 78888887554 223455677889999999999999999999997665678899988754433321 2356
Q ss_pred chhhhhhhccCCcHHHHHHHHHhhcccCC
Q 039852 366 VLTPLRLSYNDLPSRVKRCFSYCAIFVNR 394 (731)
Q Consensus 366 i~~~L~lsy~~L~~~~k~cf~~~~~f~~r 394 (731)
+..++.+||+.||++++.||.+|++||..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~ 264 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEG 264 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTT
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCC
Confidence 88999999999999999999999999983
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=9.6e-20 Score=219.15 Aligned_cols=267 Identities=16% Similarity=0.131 Sum_probs=135.5
Q ss_pred cchhhhhccccccEEeecCCccc-cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIV-QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
.+|..|+++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..+++
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 44555555555555555555544 34555555555555555554444455555555555555555555333345555555
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETR 558 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 558 (731)
+++|+.|.+..+... +..+..+.++++|+.|++++.. .....+..+.++++|+.|+++.|..
T Consensus 259 l~~L~~L~L~~n~l~-------~~~p~~l~~l~~L~~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~------- 320 (968)
T PLN00113 259 LKNLQYLFLYQNKLS-------GPIPPSIFSLQKLISLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNF------- 320 (968)
T ss_pred CCCCCEEECcCCeee-------ccCchhHhhccCcCEEECcCCe----eccCCChhHcCCCCCcEEECCCCcc-------
Confidence 555555554333221 1122334444555555544321 1112223344555555555555543
Q ss_pred CcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccc-------
Q 039852 559 KNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGV------- 631 (731)
Q Consensus 559 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~------- 631 (731)
....+..+..+++|+.|++++|...+.+|.+ ++.+++|+.|++++|.....+|..+...
T Consensus 321 ----~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~----------l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 321 ----TGKIPVALTSLPRLQVLQLWSNKFSGEIPKN----------LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred ----CCcCChhHhcCCCCCEEECcCCCCcCcCChH----------HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 1122333445556666666666655444543 3344555555555443222222221100
Q ss_pred -----------cccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEE
Q 039852 632 -----------EIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELR 700 (731)
Q Consensus 632 -----------~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~ 700 (731)
.....+++|+.|.+.++.-....+. .+..+++|+.|++++|.-...+|..+..+++|+.|+
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--------EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh--------hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 0013455666666666532222221 233678888888888765556666667788888888
Q ss_pred EccCch
Q 039852 701 ILMCGL 706 (731)
Q Consensus 701 l~~c~~ 706 (731)
+++|..
T Consensus 459 L~~n~~ 464 (968)
T PLN00113 459 LARNKF 464 (968)
T ss_pred CcCcee
Confidence 888864
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=1.9e-19 Score=216.60 Aligned_cols=269 Identities=17% Similarity=0.139 Sum_probs=198.6
Q ss_pred ccchhhhhccccccEEeecCCccc-cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIV-QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
..+|..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 357888999999999999999876 7888999999999999999877778899999999999999999866667888899
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCccc
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 557 (731)
++++|+.|++..+... +..+..+.++++|+.|.+.+.. .....+..+.++++|+.|++++|..
T Consensus 234 ~l~~L~~L~L~~n~l~-------~~~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~l------ 296 (968)
T PLN00113 234 GLTSLNHLDLVYNNLT-------GPIPSSLGNLKNLQYLFLYQNK----LSGPIPPSIFSLQKLISLDLSDNSL------ 296 (968)
T ss_pred cCCCCCEEECcCceec-------cccChhHhCCCCCCEEECcCCe----eeccCchhHhhccCcCEEECcCCee------
Confidence 9999999988655433 2345567788888888887532 2233444567788999999998865
Q ss_pred CCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 558 RKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
....+..+..+++|+.|++++|...+.+|.+ ++.+++|+.|+|++|.....+|..+ ..+
T Consensus 297 -----~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~p~~l------~~~ 355 (968)
T PLN00113 297 -----SGEIPELVIQLQNLEILHLFSNNFTGKIPVA----------LTSLPRLQVLQLWSNKFSGEIPKNL------GKH 355 (968)
T ss_pred -----ccCCChhHcCCCCCcEEECCCCccCCcCChh----------HhcCCCCCEEECcCCCCcCcCChHH------hCC
Confidence 2234455667889999999999887655553 5668999999999877544555443 467
Q ss_pred cccceeeccccccccccccccc----------------cccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEE
Q 039852 638 PKLKSLLIEDLLELEEWDYGIT----------------RTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRI 701 (731)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~----------------~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l 701 (731)
++|+.|+++++.-...++.... +..+..+..+++|+.|++.+|.-...+|..+..+++|+.|++
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 8888888887632222221110 001122446778888888887666677777778888888888
Q ss_pred ccCc
Q 039852 702 LMCG 705 (731)
Q Consensus 702 ~~c~ 705 (731)
++|.
T Consensus 436 s~N~ 439 (968)
T PLN00113 436 SNNN 439 (968)
T ss_pred cCCc
Confidence 8765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=5.2e-21 Score=196.84 Aligned_cols=272 Identities=20% Similarity=0.195 Sum_probs=205.9
Q ss_pred CccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCcccccccccc
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVGI 476 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i 476 (731)
...+|..|..|..|..||||+|.+.+.|..+..-+++-+|+|++ +.+..+|.. +.+|+.|-+|++++| .+..+|+.+
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~ 169 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQI 169 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHH
Confidence 45689999999999999999999999999999999999999999 669999987 678999999999999 889999999
Q ss_pred CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcc
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEE 556 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 556 (731)
.+|.+|++|.+.++... ...+..|++|+.|..|++++..+. -..++.++..+.+|..++++.|..
T Consensus 170 RRL~~LqtL~Ls~NPL~-------hfQLrQLPsmtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~L----- 234 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLN-------HFQLRQLPSMTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVDLSENNL----- 234 (1255)
T ss_pred HHHhhhhhhhcCCChhh-------HHHHhcCccchhhhhhhcccccch---hhcCCCchhhhhhhhhccccccCC-----
Confidence 99999999998766544 456788888999999998875442 234566788899999999999876
Q ss_pred cCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCcc----chh--hc------ccCCCC-CCCCCCcceeeeccccCce-
Q 039852 557 TRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRS----LLV--QK------LRAAAS-FGKMPSLEKLHIWGMKRVK- 622 (731)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~----~~~--~~------L~~l~~-l~~l~~L~~L~L~~~~~l~- 622 (731)
..+++.+..+++|++|+|++|.++. +.- |.. .+ |..+|. +.+|+.|+.|.+.++. ++
T Consensus 235 -------p~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~F 305 (1255)
T KOG0444|consen 235 -------PIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTF 305 (1255)
T ss_pred -------CcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-ccc
Confidence 4577888888999999999998765 432 211 00 223332 4455555555554422 21
Q ss_pred -EeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEE
Q 039852 623 -KVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRI 701 (731)
Q Consensus 623 -~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l 701 (731)
-||..+ +.+..|+.+...++ +|+-.|.+ ++.++.|+.|.+. |+.|..+|+.|.-++-|+.|++
T Consensus 306 eGiPSGI------GKL~~Levf~aanN-~LElVPEg--------lcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 306 EGIPSGI------GKLIQLEVFHAANN-KLELVPEG--------LCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred cCCccch------hhhhhhHHHHhhcc-ccccCchh--------hhhhHHHHHhccc-ccceeechhhhhhcCCcceeec
Confidence 122221 34445555555443 44444443 4488999999985 5789999999999999999999
Q ss_pred ccCchhHHhh
Q 039852 702 LMCGLLKERY 711 (731)
Q Consensus 702 ~~c~~L~~~~ 711 (731)
++.|+|..-.
T Consensus 370 reNpnLVMPP 379 (1255)
T KOG0444|consen 370 RENPNLVMPP 379 (1255)
T ss_pred cCCcCccCCC
Confidence 9999886433
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=4.4e-20 Score=181.08 Aligned_cols=269 Identities=17% Similarity=0.204 Sum_probs=185.8
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
.+|++|+.+..|..|+..+|++..+|.+++++..|..|++.+ +++..+|+....++.|+||+...| .+..+|+.++.|
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcch
Confidence 467778888888888888888888888888888888888888 567777777666888888888777 677788888888
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCC
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRK 559 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 559 (731)
.+|..|++..+.. .++.+++.+..|..+++.. +.++....+...++.+|..|++..|..
T Consensus 206 ~~L~~LyL~~Nki---------~~lPef~gcs~L~Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdNkl-------- 264 (565)
T KOG0472|consen 206 ESLELLYLRRNKI---------RFLPEFPGCSLLKELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDNKL-------- 264 (565)
T ss_pred hhhHHHHhhhccc---------ccCCCCCccHHHHHHHhcc----cHHHhhHHHHhcccccceeeecccccc--------
Confidence 8888887755443 2455777777676666653 223333333445677777777777765
Q ss_pred cccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc-c----------------------------------------
Q 039852 560 NEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK-L---------------------------------------- 598 (731)
Q Consensus 560 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~-L---------------------------------------- 598 (731)
.++++.++-+.+|++|++++|.+++ +|..++++ |
T Consensus 265 ----ke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 265 ----KEVPDEICLLRSLERLDLSNNDISS-LPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred ----ccCchHHHHhhhhhhhcccCCcccc-CCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 3455666666777777777777666 66655543 1
Q ss_pred --------------------------------------------------------------------------------
Q 039852 599 -------------------------------------------------------------------------------- 598 (731)
Q Consensus 599 -------------------------------------------------------------------------------- 598 (731)
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence
Q ss_pred ----cCCC--CCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecccccccccccccc-------------c
Q 039852 599 ----RAAA--SFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGI-------------T 659 (731)
Q Consensus 599 ----~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~-------------~ 659 (731)
.+.+ .+.++++|..|+|+++. +..+|.++ +.+..|++|+++.+ .++.+|... .
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~------~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEM------GSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNN 491 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccch-hhhcchhh------hhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccc
Confidence 1111 14567778888887644 66777665 35566888888765 444444211 1
Q ss_pred cc---cccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 660 RT---GNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 660 ~~---~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
+. ....+..|.+|..|++.+ +.+..+|+.++++++|++|++.|.|
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 11 111266889999999988 6899999999999999999999998
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=2.4e-17 Score=198.50 Aligned_cols=254 Identities=20% Similarity=0.223 Sum_probs=133.3
Q ss_pred cccccccCCC-ceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCceEeCCCCCcCCCcc
Q 039852 423 QLSETLCELY-ILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFHVSGGGGVDGRKA 501 (731)
Q Consensus 423 ~lp~~i~~L~-~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 501 (731)
.+|..+..++ +|+.|.+.+ +.+..+|..+ ...+|++|++.+| .+..+|.++..+++|+.|++..+....
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~-~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~------- 648 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDK-YPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLK------- 648 (1153)
T ss_pred ecCcchhhcCcccEEEEecC-CCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcC-------
Confidence 4566665553 466666666 3456666555 3456666666655 455555555555555555543322111
Q ss_pred cccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCccc------------CCcccHHHHhhc
Q 039852 502 CRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEET------------RKNEDDQLLLEA 569 (731)
Q Consensus 502 ~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~------------~~~~~~~~~~~~ 569 (731)
.+..+..+++|+.|.+.++..... .+..+.++++|+.|++++|........ ..+......++
T Consensus 649 -~ip~ls~l~~Le~L~L~~c~~L~~----lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~- 722 (1153)
T PLN03210 649 -EIPDLSMATNLETLKLSDCSSLVE----LPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD- 722 (1153)
T ss_pred -cCCccccCCcccEEEecCCCCccc----cchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc-
Confidence 122334444444444444332211 112333444444444444322000000 00000000110
Q ss_pred CCCCCCCceEEEeeecCCCCCccchhhc-cc-----------------CCCC--CCCCCCcceeeeccccCceEeCcccc
Q 039852 570 LRPPLDLKKLEIRYYRGNTVFRSLLVQK-LR-----------------AAAS--FGKMPSLEKLHIWGMKRVKKVGDEFL 629 (731)
Q Consensus 570 l~~~~~L~~L~l~~~~~~~~lp~~~~~~-L~-----------------~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~ 629 (731)
.+.+|+.|++.++.+.. +|..+.-. |. .+++ ...+++|+.|+|++|+.+..+|..+
T Consensus 723 --~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si- 798 (1153)
T PLN03210 723 --ISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI- 798 (1153)
T ss_pred --ccCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh-
Confidence 12456666666666554 66543100 10 0000 1124678888888887777777654
Q ss_pred cccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcC--------------------CCCC
Q 039852 630 GVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKA--------------------LPDY 689 (731)
Q Consensus 630 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~--------------------lp~~ 689 (731)
..+++|+.|++++|.+++.+|... .+++|++|++++|.++.. +|..
T Consensus 799 -----~~L~~L~~L~Ls~C~~L~~LP~~~---------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 799 -----QNLHKLEHLEIENCINLETLPTGI---------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred -----hCCCCCCEEECCCCCCcCeeCCCC---------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 478889999999888888776542 356666666666655544 4445
Q ss_pred CCCCCCccEEEEccCchhHHh
Q 039852 690 IHQTTTLKELRILMCGLLKER 710 (731)
Q Consensus 690 ~~~l~~L~~L~l~~c~~L~~~ 710 (731)
+..+++|+.|++++|++|+..
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCcc
Confidence 566788889999998888764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=4.2e-18 Score=167.27 Aligned_cols=250 Identities=24% Similarity=0.255 Sum_probs=202.5
Q ss_pred chhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLT 480 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~ 480 (731)
+.+.+.+|..|.+|++++|.+.++|.+|+.+..++.|++++ +++.++|+.++.+.+|++|+.+.| .+..+|++|+.+.
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~ 137 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLL 137 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHh
Confidence 44567788999999999999999999999999999999999 779999999999999999999998 6788999999999
Q ss_pred CCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCc
Q 039852 481 GLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKN 560 (731)
Q Consensus 481 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 560 (731)
.|..|...++...+ .++.+.++.+|..+.+.+ +.. .+.+...-+|+.|+.|+...|..
T Consensus 138 ~l~dl~~~~N~i~s--------lp~~~~~~~~l~~l~~~~----n~l-~~l~~~~i~m~~L~~ld~~~N~L--------- 195 (565)
T KOG0472|consen 138 DLEDLDATNNQISS--------LPEDMVNLSKLSKLDLEG----NKL-KALPENHIAMKRLKHLDCNSNLL--------- 195 (565)
T ss_pred hhhhhhcccccccc--------CchHHHHHHHHHHhhccc----cch-hhCCHHHHHHHHHHhcccchhhh---------
Confidence 99988765544332 445555555565555543 111 22333344588999998877755
Q ss_pred ccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccc
Q 039852 561 EDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKL 640 (731)
Q Consensus 561 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L 640 (731)
+..++.+..+.+|..|++..|.+.. +| .++.+..|+.|+++. +.++.+|.+.. ..+++|
T Consensus 196 ---~tlP~~lg~l~~L~~LyL~~Nki~~-lP-----------ef~gcs~L~Elh~g~-N~i~~lpae~~-----~~L~~l 254 (565)
T KOG0472|consen 196 ---ETLPPELGGLESLELLYLRRNKIRF-LP-----------EFPGCSLLKELHVGE-NQIEMLPAEHL-----KHLNSL 254 (565)
T ss_pred ---hcCChhhcchhhhHHHHhhhccccc-CC-----------CCCccHHHHHHHhcc-cHHHhhHHHHh-----cccccc
Confidence 5567777788899999999988765 55 467889999999987 45888888763 578999
Q ss_pred ceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCch
Q 039852 641 KSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCGL 706 (731)
Q Consensus 641 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 706 (731)
..|+++++ ++++.|.+.. .+.+|++|++++ +.+..+|..++++ .|+.|-+.|.|.
T Consensus 255 ~vLDLRdN-klke~Pde~c--------lLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 255 LVLDLRDN-KLKEVPDEIC--------LLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred eeeecccc-ccccCchHHH--------HhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence 99999998 7999998765 789999999998 6899999999999 999999999983
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=5.5e-17 Score=167.54 Aligned_cols=248 Identities=23% Similarity=0.253 Sum_probs=171.3
Q ss_pred cchhhhhccccccEEeecCCccccccccc-cCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETL-CELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
+.|..+..-+++-+|+||+|+|..||.++ -+|..|-+|||++ +.+..+|+.+..|.+|+.|.+++|.-...--..+..
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 46777777888888888888888888774 4788888888888 668888888888888888888888422111122344
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETR 558 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 558 (731)
|++|+.|...+....- .+.+..+..|.+|+.++++. +++ ...+..+-++.+|+.|+|+.|...+
T Consensus 196 mtsL~vLhms~TqRTl------~N~Ptsld~l~NL~dvDlS~----N~L-p~vPecly~l~~LrrLNLS~N~ite----- 259 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTL------DNIPTSLDDLHNLRDVDLSE----NNL-PIVPECLYKLRNLRRLNLSGNKITE----- 259 (1255)
T ss_pred chhhhhhhcccccchh------hcCCCchhhhhhhhhccccc----cCC-CcchHHHhhhhhhheeccCcCceee-----
Confidence 6666666665443332 44555666677777755553 111 1223345677788888888876511
Q ss_pred CcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc--c------------cCCCC-CCCCCCcceeeeccccCceE
Q 039852 559 KNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK--L------------RAAAS-FGKMPSLEKLHIWGMKRVKK 623 (731)
Q Consensus 559 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~--L------------~~l~~-l~~l~~L~~L~L~~~~~l~~ 623 (731)
.....+ .-.+|++|+++.|.++. +|.-++.+ | +.+|+ +|+|.+|+.+...+ +.++-
T Consensus 260 L~~~~~-------~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LEl 330 (1255)
T KOG0444|consen 260 LNMTEG-------EWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLEL 330 (1255)
T ss_pred eeccHH-------HHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-ccccc
Confidence 000111 12467777777777766 77776643 1 55665 89999999999987 45888
Q ss_pred eCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCC
Q 039852 624 VGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD 688 (731)
Q Consensus 624 i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~ 688 (731)
+|...+ .+++|+.|.++++ .|-.+|..+. -+|-|+.|++..+|+|..-|.
T Consensus 331 VPEglc------RC~kL~kL~L~~N-rLiTLPeaIH--------lL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 331 VPEGLC------RCVKLQKLKLDHN-RLITLPEAIH--------LLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred Cchhhh------hhHHHHHhccccc-ceeechhhhh--------hcCCcceeeccCCcCccCCCC
Confidence 887653 6789999999876 6666776654 799999999999999987764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=6.7e-16 Score=158.69 Aligned_cols=306 Identities=20% Similarity=0.214 Sum_probs=146.3
Q ss_pred hhhhhhccCCcHHHHHHHHHhhcccC---CCcCCccchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCc
Q 039852 368 TPLRLSYNDLPSRVKRCFSYCAIFVN---RSSLTPKIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCM 443 (731)
Q Consensus 368 ~~L~lsy~~L~~~~k~cf~~~~~f~~---rs~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~ 443 (731)
+.|++|+|.|...--.-|..+--..+ +.--...+|...+...||..|+|.+|.|.++.+ ++..+..|++|||+. +
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-N 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-c
Confidence 34677777765533222222111111 111133455555555556666666666655532 355556666666666 4
Q ss_pred CcccCccc-ccCCCCcceeeccCCccccccccc-cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCC
Q 039852 444 DLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRL 521 (731)
Q Consensus 444 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l 521 (731)
.+.++|.. +..-.++++|++++| .++.+-.+ +.++.+|-+|.+..+.... -....+++|++|+.|.+..-
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNritt-------Lp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITT-------LPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccc-------cCHHHhhhcchhhhhhcccc
Confidence 45555432 444455666666665 34443333 4455555555544333221 11223334444444333320
Q ss_pred --CCC------------------CChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEE
Q 039852 522 --GDV------------------SDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEI 581 (731)
Q Consensus 522 --~~~------------------~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 581 (731)
+.+ ++......-.+-.+.+++.|+|..|... ...-.++..+..|+.|++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-----------~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-----------AVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-----------hhhcccccccchhhhhcc
Confidence 000 1111111122345566666777666541 111123445566666666
Q ss_pred eeecCCCCCc-cchhh-cc----------cCCC--CCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccc
Q 039852 582 RYYRGNTVFR-SLLVQ-KL----------RAAA--SFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIED 647 (731)
Q Consensus 582 ~~~~~~~~lp-~~~~~-~L----------~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~ 647 (731)
++|.+...-+ .|-.. .| ..++ ++..|..|+.|.|+++ .+.++.+..+ .++.+|++|+++.
T Consensus 301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af-----~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAF-----VGLSSLHKLDLRS 374 (873)
T ss_pred chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHH-----HHhhhhhhhcCcC
Confidence 6665544111 12110 00 1111 1233344444444442 2333333222 3456666666665
Q ss_pred cccccccccccccccccccccCcccceeeecccccCcCCC-CCCCCCCCccEEEEccCc
Q 039852 648 LLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP-DYIHQTTTLKELRILMCG 705 (731)
Q Consensus 648 ~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~l~~c~ 705 (731)
+. -+|..++. ...+..+|+|++|.+.+ ++++++| ..+..+++|++|++.+.+
T Consensus 375 N~--ls~~IEDa---a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 375 NE--LSWCIEDA---AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred Ce--EEEEEecc---hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 42 12333221 12244689999999988 6899998 456778999999998876
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=1.4e-15 Score=164.73 Aligned_cols=89 Identities=27% Similarity=0.287 Sum_probs=71.3
Q ss_pred CccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
+...|..|..+.+|+.|+++.|.|..+|.++.++++|++|+|.+ +.+..+|.++..+++|++|++++| .+..+|.-|.
T Consensus 57 ~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 57 ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIE 134 (1081)
T ss_pred cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchh-ccCCCchhHH
Confidence 34567778888888999998888888888888888999998887 778888888888889999998888 5667777776
Q ss_pred CCCCCCccCce
Q 039852 478 RLTGLRTLGEF 488 (731)
Q Consensus 478 ~L~~L~~L~~~ 488 (731)
.++.+.++...
T Consensus 135 ~lt~~~~~~~s 145 (1081)
T KOG0618|consen 135 VLTAEEELAAS 145 (1081)
T ss_pred hhhHHHHHhhh
Confidence 66666655443
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.39 E-value=1.6e-14 Score=148.64 Aligned_cols=261 Identities=18% Similarity=0.216 Sum_probs=158.9
Q ss_pred hhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCcccccc-ccccCCCCC
Q 039852 405 IEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYM-VVGIGRLTG 481 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~ 481 (731)
|..=.++++|+|++|.|+.+- ..|..|.+|-+|.|+. +.+..+|.- |.+|++|+.|++..| .++.+ --.+..|.+
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~S 246 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPS 246 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchh
Confidence 333457888888888888764 3577788888888888 557777765 555888888888877 44443 122566777
Q ss_pred CCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcc
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNE 561 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 561 (731)
|+.|.+-.+.... .+ ++ .+-.|.++..|++.. +.......-.+-++..|+.|++++|..
T Consensus 247 l~nlklqrN~I~k-L~--DG----~Fy~l~kme~l~L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI---------- 305 (873)
T KOG4194|consen 247 LQNLKLQRNDISK-LD--DG----AFYGLEKMEHLNLET----NRLQAVNEGWLFGLTSLEQLDLSYNAI---------- 305 (873)
T ss_pred hhhhhhhhcCccc-cc--Cc----ceeeecccceeeccc----chhhhhhcccccccchhhhhccchhhh----------
Confidence 7777664333221 00 01 122333444444332 122222333455667777777777765
Q ss_pred cHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc---c-------cCCC-----CCCCCCCcceeeeccccCceEeCc
Q 039852 562 DDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK---L-------RAAA-----SFGKMPSLEKLHIWGMKRVKKVGD 626 (731)
Q Consensus 562 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~---L-------~~l~-----~l~~l~~L~~L~L~~~~~l~~i~~ 626 (731)
...-.+++.-.++|+.|+|++|.+.. +|+.-... | ..+. .+..+.+|+.|+|+++.---.|-.
T Consensus 306 -~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 306 -QRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred -heeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 11223444456677777777777766 65432211 1 1111 244578999999987542222222
Q ss_pred ccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCC-CCCCCCCCCccEEEEcc
Q 039852 627 EFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL-PDYIHQTTTLKELRILM 703 (731)
Q Consensus 627 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l-p~~~~~l~~L~~L~l~~ 703 (731)
... .-.++|+|+.|.+.++ +++.++-.... .+++||+|++.++ -+.++ |..+..+ .|++|.+..
T Consensus 384 aa~---~f~gl~~LrkL~l~gN-qlk~I~krAfs-------gl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 384 AAV---AFNGLPSLRKLRLTGN-QLKSIPKRAFS-------GLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred chh---hhccchhhhheeecCc-eeeecchhhhc-------cCcccceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence 111 1246899999999987 78888766543 7999999999885 45555 5666666 888888765
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=1e-14 Score=158.15 Aligned_cols=244 Identities=22% Similarity=0.279 Sum_probs=176.9
Q ss_pred ccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCce
Q 039852 409 VHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEF 488 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 488 (731)
.+|+|++++.+.+..+|+.++.+.+|+.+++.+ +.+..+|..+...++|+.|.+..| .+..+|.....+++|++|++.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 578999999999999999999999999999998 567899999999999999999888 778899988889999999886
Q ss_pred EeCCCCCcCCCccccc-ccccCCCC-CCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHH
Q 039852 489 HVSGGGGVDGRKACRL-ESLKNLEH-LQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLL 566 (731)
Q Consensus 489 ~~~~~~~~~~~~~~~~-~~l~~L~~-L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 566 (731)
.+.... .+ ..+..+.. |+.|+.+.... .. .....=..+..|+.|.+..|.. .+..
T Consensus 319 ~N~L~~--------lp~~~l~v~~~~l~~ln~s~n~l-~~---lp~~~e~~~~~Lq~LylanN~L-----------td~c 375 (1081)
T KOG0618|consen 319 SNNLPS--------LPDNFLAVLNASLNTLNVSSNKL-ST---LPSYEENNHAALQELYLANNHL-----------TDSC 375 (1081)
T ss_pred hccccc--------cchHHHhhhhHHHHHHhhhhccc-cc---cccccchhhHHHHHHHHhcCcc-----------cccc
Confidence 554332 11 11111111 22233322110 00 0011112345677888888877 4456
Q ss_pred hhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecc
Q 039852 567 LEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIE 646 (731)
Q Consensus 567 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~ 646 (731)
+..+..+.+|+.|++++|.+.. ||.. .+.+++.|++|+|++ +.++.+|... ..++.|++|...
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~-fpas---------~~~kle~LeeL~LSG-NkL~~Lp~tv------a~~~~L~tL~ah 438 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNS-FPAS---------KLRKLEELEELNLSG-NKLTTLPDTV------ANLGRLHTLRAH 438 (1081)
T ss_pred hhhhccccceeeeeeccccccc-CCHH---------HHhchHHhHHHhccc-chhhhhhHHH------HhhhhhHHHhhc
Confidence 6777888999999999999877 8873 356789999999998 4588888654 578899999887
Q ss_pred ccccccccccccccccccccccCcccceeeecccccCcCC--CCCCCCCCCccEEEEccCch
Q 039852 647 DLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL--PDYIHQTTTLKELRILMCGL 706 (731)
Q Consensus 647 ~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l--p~~~~~l~~L~~L~l~~c~~ 706 (731)
++ .+..+| +.. .+|.|+.++++ |++|..+ |.... -++|++|+++|.+.
T Consensus 439 sN-~l~~fP-e~~--------~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 439 SN-QLLSFP-ELA--------QLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred CC-ceeech-hhh--------hcCcceEEecc-cchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 76 567777 222 78999999997 4677654 43322 27999999999884
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=2.5e-14 Score=124.78 Aligned_cols=164 Identities=21% Similarity=0.206 Sum_probs=123.3
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
+..+.+...|.||+|.++.+|..|..|.+|+.|++.+ +.+.++|..+..|++|++|+++-| .+..+|.|+|.+..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 4456777888999999999999999999999999988 779999999999999999999877 78889999999999999
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+.... ...+..+-.|+.|+.|.+.. ++ .+..+..++++++|+.|.+..|.. .
T Consensus 107 ldltynnl~e------~~lpgnff~m~tlralyl~d----nd-fe~lp~dvg~lt~lqil~lrdndl------------l 163 (264)
T KOG0617|consen 107 LDLTYNNLNE------NSLPGNFFYMTTLRALYLGD----ND-FEILPPDVGKLTNLQILSLRDNDL------------L 163 (264)
T ss_pred hhcccccccc------ccCCcchhHHHHHHHHHhcC----CC-cccCChhhhhhcceeEEeeccCch------------h
Confidence 9886655443 33445555666676666654 22 244555677777888877776654 3
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccch
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLL 594 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~ 594 (731)
..+..+..+..|++|+|.|+.... +|.-+
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~v-lppel 192 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTV-LPPEL 192 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeee-cChhh
Confidence 344555566777888888877765 66533
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=1.5e-12 Score=146.97 Aligned_cols=231 Identities=17% Similarity=0.199 Sum_probs=155.1
Q ss_pred chhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLT 480 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~ 480 (731)
+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++| .+..+|..+. +
T Consensus 193 LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s 262 (754)
T PRK15370 193 IPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--S 262 (754)
T ss_pred CCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--C
Confidence 444442 478899999999999988765 48999999984 5778887654 47899999988 5677887664 4
Q ss_pred CCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCc
Q 039852 481 GLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKN 560 (731)
Q Consensus 481 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 560 (731)
+|+.|++..+.... .+..+. .+|+.|.+++. ++.... ..+ ..+|+.|++++|...
T Consensus 263 ~L~~L~Ls~N~L~~--------LP~~l~--~sL~~L~Ls~N-~Lt~LP----~~l--p~sL~~L~Ls~N~Lt-------- 317 (754)
T PRK15370 263 ALQSLDLFHNKISC--------LPENLP--EELRYLSVYDN-SIRTLP----AHL--PSGITHLNVQSNSLT-------- 317 (754)
T ss_pred CCCEEECcCCccCc--------cccccC--CCCcEEECCCC-ccccCc----ccc--hhhHHHHHhcCCccc--------
Confidence 67777664332221 112222 35666766652 111111 111 136788888887661
Q ss_pred ccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccc
Q 039852 561 EDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKL 640 (731)
Q Consensus 561 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L 640 (731)
.++..+ +++|+.|++++|.+.. +|..+ .++|+.|+|++|. +..+|.. ..++|
T Consensus 318 ----~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------~~sL~~L~Ls~N~-L~~LP~~--------lp~~L 369 (754)
T PRK15370 318 ----ALPETL--PPGLKTLEAGENALTS-LPASL------------PPELQVLDVSKNQ-ITVLPET--------LPPTI 369 (754)
T ss_pred ----cCCccc--cccceeccccCCcccc-CChhh------------cCcccEEECCCCC-CCcCChh--------hcCCc
Confidence 112222 3689999999998877 77532 3689999999865 6666653 23689
Q ss_pred ceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCC----CCCCCccEEEEccCch
Q 039852 641 KSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYI----HQTTTLKELRILMCGL 706 (731)
Q Consensus 641 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~----~~l~~L~~L~l~~c~~ 706 (731)
+.|++++| ++..+|.. ..++|+.|++++| ++..+|..+ ..++++..|++.+.|-
T Consensus 370 ~~LdLs~N-~Lt~LP~~----------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 370 TTLDVSRN-ALTNLPEN----------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CEEECCCC-cCCCCCHh----------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 99999998 57666543 2347999999985 778888654 3357889999999883
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=8.8e-12 Score=139.88 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=58.2
Q ss_pred CCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCC
Q 039852 608 PSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP 687 (731)
Q Consensus 608 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp 687 (731)
++|+.|+|+++. ++.+|. .+++|+.|+++++ .+..+|. .+.+|+.|++++ ++++.+|
T Consensus 382 ~~L~~LdLs~N~-Lt~LP~---------l~s~L~~LdLS~N-~LssIP~-----------l~~~L~~L~Ls~-NqLt~LP 438 (788)
T PRK15387 382 SGLKELIVSGNR-LTSLPV---------LPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYR-NQLTRLP 438 (788)
T ss_pred cccceEEecCCc-ccCCCC---------cccCCCEEEccCC-cCCCCCc-----------chhhhhhhhhcc-CcccccC
Confidence 578899998754 555543 2367999999987 4666553 345788999988 5789999
Q ss_pred CCCCCCCCccEEEEccCc
Q 039852 688 DYIHQTTTLKELRILMCG 705 (731)
Q Consensus 688 ~~~~~l~~L~~L~l~~c~ 705 (731)
..+.++++|+.|++++++
T Consensus 439 ~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 439 ESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hHHhhccCCCeEECCCCC
Confidence 888899999999999987
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=6e-12 Score=144.32 Aligned_cols=180 Identities=26% Similarity=0.272 Sum_probs=121.2
Q ss_pred ccccEEeecCCc--ccccccc-ccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCcc
Q 039852 409 VHLRYLNLSGQD--IVQLSET-LCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTL 485 (731)
Q Consensus 409 ~~Lr~L~L~~~~--i~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 485 (731)
+.|++|-+.+|. +..++.. |..++.|++|||++|..+..+|..|+.|-+||+|+++++ .+..+|.++++|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 368888888875 6666654 667999999999999999999999999999999999998 788999999999999999
Q ss_pred CceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHH
Q 039852 486 GEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQL 565 (731)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 565 (731)
++....... ....-+..|.+|+.|.+..-. ..........+.++.+|+.++...... .
T Consensus 624 nl~~~~~l~-------~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~-------------~ 681 (889)
T KOG4658|consen 624 NLEVTGRLE-------SIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV-------------L 681 (889)
T ss_pred ccccccccc-------cccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh-------------H
Confidence 987665432 123334457778877766532 112223333456666777766643321 2
Q ss_pred HhhcCCCCCCCc----eEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCce
Q 039852 566 LLEALRPPLDLK----KLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVK 622 (731)
Q Consensus 566 ~~~~l~~~~~L~----~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~ 622 (731)
+++.+.....|. .+.+.++.... ...+++.+++|+.|.+.+|...+
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~-----------~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRT-----------LISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccce-----------eecccccccCcceEEEEcCCCch
Confidence 223232333333 33333322221 22356778999999999887543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.13 E-value=3.3e-11 Score=136.18 Aligned_cols=221 Identities=15% Similarity=0.181 Sum_probs=148.2
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCceE
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFH 489 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 489 (731)
+...|+++++.++.+|..+. .+|+.|++++ +.+..+|..+. .+|++|++++| .+..+|..+. .+|+.|.+..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDN-NELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecC-CCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 45679999999999998775 5899999999 56889998765 59999999998 6778887654 3577776644
Q ss_pred eCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhc
Q 039852 490 VSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEA 569 (731)
Q Consensus 490 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 569 (731)
+.... .+..++ .+|+.|.+++. .+..+ +..+. .+|+.|+++.|.+. .++..
T Consensus 251 N~L~~--------LP~~l~--s~L~~L~Ls~N-~L~~L----P~~l~--~sL~~L~Ls~N~Lt------------~LP~~ 301 (754)
T PRK15370 251 NRITE--------LPERLP--SALQSLDLFHN-KISCL----PENLP--EELRYLSVYDNSIR------------TLPAH 301 (754)
T ss_pred CccCc--------CChhHh--CCCCEEECcCC-ccCcc----ccccC--CCCcEEECCCCccc------------cCccc
Confidence 33221 111222 35666666541 11111 11221 46888888877651 11112
Q ss_pred CCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccc
Q 039852 570 LRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLL 649 (731)
Q Consensus 570 l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~ 649 (731)
+ +++|+.|++++|.+.. +|.. ..++|++|++++|. ++.+|.. .+++|+.|+++++
T Consensus 302 l--p~sL~~L~Ls~N~Lt~-LP~~------------l~~sL~~L~Ls~N~-Lt~LP~~--------l~~sL~~L~Ls~N- 356 (754)
T PRK15370 302 L--PSGITHLNVQSNSLTA-LPET------------LPPGLKTLEAGENA-LTSLPAS--------LPPELQVLDVSKN- 356 (754)
T ss_pred c--hhhHHHHHhcCCcccc-CCcc------------ccccceeccccCCc-cccCChh--------hcCcccEEECCCC-
Confidence 2 2467888888877765 5542 13689999998865 6666643 2378999999988
Q ss_pred cccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 650 ELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 650 ~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
++..++.. ..++|++|++++| +|..+|..+. .+|+.|++++|.
T Consensus 357 ~L~~LP~~----------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 357 QITVLPET----------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred CCCcCChh----------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC
Confidence 56655532 3468999999996 6888887653 478888888875
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.11 E-value=2.4e-10 Score=128.43 Aligned_cols=219 Identities=19% Similarity=0.161 Sum_probs=137.7
Q ss_pred ccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
..+|..+. .+|+.|++++|.++.+|.. +.+|++|++++ +.+..+|.. ..+|+.|++++| .+..+|...
T Consensus 214 tsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~-N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp-- 281 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSG-NQLTSLPVL---PPGLLELSIFSN-PLTHLPALP-- 281 (788)
T ss_pred CcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecC-CccCcccCc---ccccceeeccCC-chhhhhhch--
Confidence 35777665 3788888888888888853 46788888888 467778753 357888888887 566666532
Q ss_pred CCCCCccCceEeCCCCCcCCCccccccccc-CCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCccc
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLK-NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 557 (731)
++|..|++..+.. ..++ .+++|+.|++++. .+.... . ...+|+.|.+++|...
T Consensus 282 -~~L~~L~Ls~N~L------------t~LP~~p~~L~~LdLS~N-~L~~Lp----~---lp~~L~~L~Ls~N~L~----- 335 (788)
T PRK15387 282 -SGLCKLWIFGNQL------------TSLPVLPPGLQELSVSDN-QLASLP----A---LPSELCKLWAYNNQLT----- 335 (788)
T ss_pred -hhcCEEECcCCcc------------ccccccccccceeECCCC-ccccCC----C---CcccccccccccCccc-----
Confidence 3455555433221 1111 1245666666542 111111 1 1135677777776551
Q ss_pred CCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 558 RKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
.++ . .+.+|+.|++++|.+.. +|.. .++|+.|+++++ .+..+|. ..
T Consensus 336 -------~LP-~--lp~~Lq~LdLS~N~Ls~-LP~l-------------p~~L~~L~Ls~N-~L~~LP~---------l~ 381 (788)
T PRK15387 336 -------SLP-T--LPSGLQELSVSDNQLAS-LPTL-------------PSELYKLWAYNN-RLTSLPA---------LP 381 (788)
T ss_pred -------ccc-c--cccccceEecCCCccCC-CCCC-------------Ccccceehhhcc-ccccCcc---------cc
Confidence 111 1 13578899998888776 6641 357788888764 3655553 23
Q ss_pred cccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 638 PKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
++|+.|+++++ .+..++. ..++|+.|++++| .+..+|.. +.+|+.|+++++.
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~-----------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPV-----------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred cccceEEecCC-cccCCCC-----------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc
Confidence 57899999887 4665543 3468999999996 68888864 4567778887754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.09 E-value=6.5e-12 Score=109.81 Aligned_cols=139 Identities=22% Similarity=0.200 Sum_probs=101.6
Q ss_pred ccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCc-cccccccccC
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTD-TLRYMVVGIG 477 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~-~~~~~p~~i~ 477 (731)
..+|+.|..|.+|+.|++++|+++++|.+|+.|+.|++|++.- +.+..+|.+|+.++.|+.||+..|+ +-..+|..+.
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 3578888888999999999998999998999999999998887 6688888889999999988888763 2234676677
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecC
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKK 551 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 551 (731)
-|+.|+.|++.++... ..+.+.++|++|+.|.+..-+-+ ..+..++.+..|+.|++.+|..
T Consensus 125 ~m~tlralyl~dndfe--------~lp~dvg~lt~lqil~lrdndll-----~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFE--------ILPPDVGKLTNLQILSLRDNDLL-----SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHHHHhcCCCcc--------cCChhhhhhcceeEEeeccCchh-----hCcHHHHHHHHHHHHhccccee
Confidence 7777777776544332 24566777777777776642211 2233566777888888887765
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=1.6e-11 Score=128.42 Aligned_cols=89 Identities=20% Similarity=0.129 Sum_probs=58.5
Q ss_pred chhhhhccccccEEeecCCccc-----cccccccCCCceeEEeccCCcCc------ccCcccccCCCCcceeeccCCccc
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIV-----QLSETLCELYILEKLDISYCMDL------EELPEGIKKLINMRHLLNDGTDTL 469 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~c~~l------~~lp~~i~~L~~L~~L~l~~~~~~ 469 (731)
.+..+..+.+|++|+++++.++ .++..+...++|++|+++++..- ..++..+..+.+|++|++++|...
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 3445566777999999999873 46667778888999999885422 223455777889999999888433
Q ss_pred cccccccCCCCC---CCccCceE
Q 039852 470 RYMVVGIGRLTG---LRTLGEFH 489 (731)
Q Consensus 470 ~~~p~~i~~L~~---L~~L~~~~ 489 (731)
...+..+..+.. |+.|++..
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~ 117 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNN 117 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeC
Confidence 333443433333 66665543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.92 E-value=4.1e-11 Score=118.56 Aligned_cols=87 Identities=20% Similarity=0.340 Sum_probs=65.5
Q ss_pred CCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccC
Q 039852 604 FGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKL 683 (731)
Q Consensus 604 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L 683 (731)
+..||+|+.|+|++ +.++.|....| .+...+++|.+..+ +++.+.... |..+..|+.|++.++ ++
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aF-----e~~a~l~eL~L~~N-~l~~v~~~~-------f~~ls~L~tL~L~~N-~i 334 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAF-----EGAAELQELYLTRN-KLEFVSSGM-------FQGLSGLKTLSLYDN-QI 334 (498)
T ss_pred HhhcccceEeccCC-Cccchhhhhhh-----cchhhhhhhhcCcc-hHHHHHHHh-------hhccccceeeeecCC-ee
Confidence 67899999999997 45777766554 45678889988876 555544332 337889999999995 56
Q ss_pred cCC-CCCCCCCCCccEEEEccCc
Q 039852 684 KAL-PDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 684 ~~l-p~~~~~l~~L~~L~l~~c~ 705 (731)
+.+ |..++.+.+|.+|++-..|
T Consensus 335 t~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 335 TTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EEEecccccccceeeeeehccCc
Confidence 654 6778889999999998766
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=3.7e-11 Score=118.88 Aligned_cols=95 Identities=22% Similarity=0.305 Sum_probs=75.3
Q ss_pred Cccch-hhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCcccccccc
Q 039852 398 TPKIP-RNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVV 474 (731)
Q Consensus 398 ~~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~ 474 (731)
+..+| ..|+.+++||.||||+|.|+.| |..|..|..|-.|-+.++++++.+|.+ |++|..|+.|.+.-| .+..++.
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~ 157 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQ 157 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhH
Confidence 44455 5689999999999999999977 677889999988888887889999987 788999998888776 4555555
Q ss_pred c-cCCCCCCCccCceEeCCC
Q 039852 475 G-IGRLTGLRTLGEFHVSGG 493 (731)
Q Consensus 475 ~-i~~L~~L~~L~~~~~~~~ 493 (731)
+ +..|.+|..|.++++...
T Consensus 158 ~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHHHHhhhcchhcccchhhh
Confidence 4 677888888887766443
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=1.1e-10 Score=122.23 Aligned_cols=266 Identities=18% Similarity=0.160 Sum_probs=158.4
Q ss_pred EeecCCccc--cccccccCCCceeEEeccCCcC----cccCcccccCCCCcceeeccCCccc------cccccccCCCCC
Q 039852 414 LNLSGQDIV--QLSETLCELYILEKLDISYCMD----LEELPEGIKKLINMRHLLNDGTDTL------RYMVVGIGRLTG 481 (731)
Q Consensus 414 L~L~~~~i~--~lp~~i~~L~~L~~L~l~~c~~----l~~lp~~i~~L~~L~~L~l~~~~~~------~~~p~~i~~L~~ 481 (731)
|+|.++.++ ..+.-+..+.+|+.|++++|.. ...++..+...++|++|+++++... ..++..+..+.+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 566666654 4555667778899999999763 1346667778888999999887322 223445677788
Q ss_pred CCccCceEeCCCCCcCCCcccccccccCC---CCCCcccccCCCCCCChhhhhhcccccc-ccCCceEEEEecCCCCccc
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLESLKNL---EHLQVCGIRRLGDVSDVGEAKRLELDKK-KYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L---~~L~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~ 557 (731)
|+.|++..+.... .....+..+ ++|+.|.+++..-...........+..+ ++|+.|+++.|....
T Consensus 83 L~~L~l~~~~~~~-------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~---- 151 (319)
T cd00116 83 LQELDLSDNALGP-------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG---- 151 (319)
T ss_pred eeEEEccCCCCCh-------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc----
Confidence 8888875544321 112222223 4488888876432111112223345566 889999999887611
Q ss_pred CCcccHHHHhhcCCCCCCCceEEEeeecCCCC-CccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccccc
Q 039852 558 RKNEDDQLLLEALRPPLDLKKLEIRYYRGNTV-FRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIA 636 (731)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 636 (731)
.........+..+++|++|++++|...+. ++. +. ..+..+++|++|++++|. ++..+...+.. ....
T Consensus 152 ---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~------~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~-~~~~ 219 (319)
T cd00116 152 ---ASCEALAKALRANRDLKELNLANNGIGDAGIRA-LA------EGLKANCNLEVLDLNNNG-LTDEGASALAE-TLAS 219 (319)
T ss_pred ---hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH-HH------HHHHhCCCCCEEeccCCc-cChHHHHHHHH-Hhcc
Confidence 11233445566667899999998876531 111 10 013445799999999875 33222111100 0245
Q ss_pred CcccceeeccccccccccccccccccccccccCcccceeeecccccCc-----CCCCCCCCCCCccEEEEccCch
Q 039852 637 FPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLK-----ALPDYIHQTTTLKELRILMCGL 706 (731)
Q Consensus 637 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~-----~lp~~~~~l~~L~~L~l~~c~~ 706 (731)
+++|+.|++++++ +..+........ .....+.|++|++.+|. ++ .++..+..+++|+++++++++-
T Consensus 220 ~~~L~~L~ls~n~-l~~~~~~~l~~~--~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 220 LKSLEVLNLGDNN-LTDAGAAALASA--LLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred cCCCCEEecCCCc-CchHHHHHHHHH--HhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 7899999999873 443221111000 00024799999999984 42 2333445568999999998773
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.56 E-value=4.4e-09 Score=105.35 Aligned_cols=162 Identities=16% Similarity=0.198 Sum_probs=98.0
Q ss_pred ccccCCceEEEEecCCCCcccCCcccHHHHhhcC-CCCCCCceEEEeeecCCCCCccchhhcccCCCCC-CCCCCcceee
Q 039852 537 KKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEAL-RPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASF-GKMPSLEKLH 614 (731)
Q Consensus 537 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l-~~l~~L~~L~ 614 (731)
.+..|+.|..+.+.. ..+.++..| ...++|+.|.+.+|...+ . ..+..+ .+.+.|+.|+
T Consensus 292 ~c~~lq~l~~s~~t~----------~~d~~l~aLg~~~~~L~~l~l~~c~~fs---d------~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTD----------ITDEVLWALGQHCHNLQVLELSGCQQFS---D------RGFTMLGRNCPHLERLD 352 (483)
T ss_pred hhhHhhhhcccCCCC----------CchHHHHHHhcCCCceEEEeccccchhh---h------hhhhhhhcCChhhhhhc
Confidence 455666666665543 233444454 345788888888776321 1 001112 3467888888
Q ss_pred eccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCC-CCCCCC
Q 039852 615 IWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP-DYIHQT 693 (731)
Q Consensus 615 L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-~~~~~l 693 (731)
+.+|..+..- .+... ...+|.|+.|.+++|....+-..... ...-.++..|+.|.+.+||.+.+-- +.+..+
T Consensus 353 ~e~~~~~~d~--tL~sl--s~~C~~lr~lslshce~itD~gi~~l---~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 353 LEECGLITDG--TLASL--SRNCPRLRVLSLSHCELITDEGIRHL---SSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred ccccceehhh--hHhhh--ccCCchhccCChhhhhhhhhhhhhhh---hhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 8877644322 11111 35788999999998865543311110 0112267889999999999887642 446678
Q ss_pred CCccEEEEccCchhHHhhccCCCCCcccccCCCCccc
Q 039852 694 TTLKELRILMCGLLKERYRKGKGQDWAKISHIPNIDI 730 (731)
Q Consensus 694 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~i~hip~i~~ 730 (731)
++|+.+++.+|....+...+ +-..|.|+|.+
T Consensus 426 ~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v 456 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAIS------RFATHLPNIKV 456 (483)
T ss_pred cccceeeeechhhhhhhhhH------HHHhhCcccee
Confidence 89999999999987665432 23567777654
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.55 E-value=4.9e-07 Score=97.39 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=83.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
.++.++||+++.+++...+..... +.....+-|+|..|+|||++++.++++.......-..++++.....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854322 123345679999999999999999995433322234566666667778899999
Q ss_pred HHHHccCC-CC-ChhhHHHHHHHHHHHhC--CCceEEEehhhHH
Q 039852 256 MLEALTGS-TS-NLDALQSLLISIDESIA--GKRFLLVLDDVML 295 (731)
Q Consensus 256 i~~~~~~~-~~-~~~~~~~~~~~l~~~l~--~kr~llvlDdvw~ 295 (731)
++.++.+. .+ ...+.+.....+.+.+. ++..+||+|+++.
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence 99998762 21 22234555566666665 4568899999974
No 28
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.50 E-value=2.5e-07 Score=90.87 Aligned_cols=91 Identities=19% Similarity=0.129 Sum_probs=64.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC--CCHHHHHHHHHHHccCCC---CChh---hHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET--FDEFRIAKAMLEALTGST---SNLD---ALQSLLI 275 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~~~~~~---~~~~---~~~~~~~ 275 (731)
.-..++|+|.+|+|||||++.+|++.... +|+..+|+.+.+. +++.++++.+...+.... +... .......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999976554 8999999998777 899999999944332211 1111 1112222
Q ss_pred HHHHH-hCCCceEEEehhhHH
Q 039852 276 SIDES-IAGKRFLLVLDDVML 295 (731)
Q Consensus 276 ~l~~~-l~~kr~llvlDdvw~ 295 (731)
..... -.|++.++++|++-.
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 358999999999853
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.49 E-value=9.1e-07 Score=94.27 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=80.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhh-ccc---ceEEEEEeCCCCCHHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVK-REF---HKILWACVSETFDEFR 251 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~ 251 (731)
.++.++||+++.++|..+|..... +.....+.|+|++|+|||++++.++++..-. ... -..+|+......+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999875322 1234568999999999999999999853211 111 1356777777777888
Q ss_pred HHHHHHHHcc---CCCC-ChhhHHHHHHHHHHHh--CCCceEEEehhhHH
Q 039852 252 IAKAMLEALT---GSTS-NLDALQSLLISIDESI--AGKRFLLVLDDVML 295 (731)
Q Consensus 252 i~~~i~~~~~---~~~~-~~~~~~~~~~~l~~~l--~~kr~llvlDdvw~ 295 (731)
++..++.++. ...+ ...+..+....+.+.+ .+++++||||+++.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 9999999884 2211 1122333444455555 35678999999974
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.48 E-value=3e-06 Score=86.06 Aligned_cols=89 Identities=27% Similarity=0.237 Sum_probs=57.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChh---hHHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLD---ALQSLLISIDES 280 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~---~~~~~~~~l~~~ 280 (731)
...++.|+|..|+||||+++.+++..... .+ ..+|+ +....+..+++..+...++....... ....+...+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34589999999999999999999854321 11 12333 33456778899999988865432221 122233333332
Q ss_pred -hCCCceEEEehhhHH
Q 039852 281 -IAGKRFLLVLDDVML 295 (731)
Q Consensus 281 -l~~kr~llvlDdvw~ 295 (731)
..++++++|+||+|.
T Consensus 119 ~~~~~~~vliiDe~~~ 134 (269)
T TIGR03015 119 FAAGKRALLVVDEAQN 134 (269)
T ss_pred HhCCCCeEEEEECccc
Confidence 368889999999866
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=1.9e-08 Score=104.59 Aligned_cols=137 Identities=28% Similarity=0.309 Sum_probs=111.8
Q ss_pred CccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
+..+|..+++|..|.||+|+.|++..+|..++.| -|+.|.+++ +++..+|.+++.+..|.+|+.+.| .+..+|..++
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~ 186 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLG 186 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHHhh
Confidence 4568999999999999999999999999999987 689999998 779999999999999999999999 7888999999
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecC
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKK 551 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 551 (731)
.|++|+.|.+..+... ..++++..|+ |..|++++ +....++..+.+|++|+.|.|.+|..
T Consensus 187 ~l~slr~l~vrRn~l~--------~lp~El~~Lp-Li~lDfSc-----Nkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE--------DLPEELCSLP-LIRLDFSC-----NKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hHHHHHHHHHhhhhhh--------hCCHHHhCCc-eeeeeccc-----CceeecchhhhhhhhheeeeeccCCC
Confidence 9999999987554432 2556666554 55555554 12234566788899999999998876
No 32
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.44 E-value=4.5e-07 Score=92.66 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=62.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC--CHHHHHHHHHHHccCCCCCh---hh---HHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF--DEFRIAKAMLEALTGSTSNL---DA---LQSLLIS 276 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~~~~~~~~~---~~---~~~~~~~ 276 (731)
=....|+|.+|+||||||++||++.... +|+..+||.+.+.. ++.++++.+...+.....+. .. .......
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999976655 89999999999988 77888888874332222111 11 1111111
Q ss_pred HHHH-hCCCceEEEehhhH
Q 039852 277 IDES-IAGKRFLLVLDDVM 294 (731)
Q Consensus 277 l~~~-l~~kr~llvlDdvw 294 (731)
-... -.|++++|++|++-
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 2221 36899999999995
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=2.1e-08 Score=104.28 Aligned_cols=183 Identities=24% Similarity=0.260 Sum_probs=137.6
Q ss_pred ccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
..+|..++.+..|..|.|..|.+..+|..+++|..|.+|||+. +.+..+|..+..|+ |+.|.+++| +++.+|.+|+.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC-ccccCCccccc
Confidence 3588888888999999999999999999999999999999999 77999999998776 999999888 88999999997
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETR 558 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 558 (731)
+..|..|+...+.. ...+..+..|..|+.|.+.. +.. ..++..+. .-.|..|++++|..
T Consensus 165 ~~tl~~ld~s~nei--------~slpsql~~l~slr~l~vrR----n~l-~~lp~El~-~LpLi~lDfScNki------- 223 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEI--------QSLPSQLGYLTSLRDLNVRR----NHL-EDLPEELC-SLPLIRLDFSCNKI------- 223 (722)
T ss_pred chhHHHhhhhhhhh--------hhchHHhhhHHHHHHHHHhh----hhh-hhCCHHHh-CCceeeeecccCce-------
Confidence 77787777654433 23556777788887776653 111 22223333 34678889988876
Q ss_pred CcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccc
Q 039852 559 KNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGM 618 (731)
Q Consensus 559 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~ 618 (731)
..++-.+..+..|++|-|.+|.+.. -|.-++.. |...--|||++..|
T Consensus 224 -----s~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~k-------GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 -----SYLPVDFRKMRHLQVLQLENNPLQS-PPAQICEK-------GKVHIFKYLSTQAC 270 (722)
T ss_pred -----eecchhhhhhhhheeeeeccCCCCC-ChHHHHhc-------cceeeeeeecchhc
Confidence 3455667788999999999999876 66655532 33444566666655
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=3.4e-08 Score=96.97 Aligned_cols=230 Identities=19% Similarity=0.142 Sum_probs=114.5
Q ss_pred hhhccccccEEeecCCccc-----cccccccCCCceeEEeccCCcCc----ccCccc-------ccCCCCcceeeccCCc
Q 039852 404 NIEKLVHLRYLNLSGQDIV-----QLSETLCELYILEKLDISYCMDL----EELPEG-------IKKLINMRHLLNDGTD 467 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~c~~l----~~lp~~-------i~~L~~L~~L~l~~~~ 467 (731)
.+..+..+.+|+||+|.+. .+-+.+.+.++|+.-+++. -.. ..+|+. +-.+++|+.|+||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4556778899999999865 3445566777888888765 222 234443 3456789999999884
Q ss_pred cccccccc----cCCCCCCCccCceEeCCCCCcCCCccc------ccccccCCCCCCcccccCCCCCCChhhhhhccccc
Q 039852 468 TLRYMVVG----IGRLTGLRTLGEFHVSGGGGVDGRKAC------RLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDK 537 (731)
Q Consensus 468 ~~~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~~------~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~ 537 (731)
.-...+++ |.+++.|++|++.++..+..-....+. .....++-.+|+++.+.+-.--+....+....+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 33233332 567888888888766544210000000 01112233445554443311111111222333445
Q ss_pred cccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecc
Q 039852 538 KKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWG 617 (731)
Q Consensus 538 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~ 617 (731)
.+.|+.+.+..|... ........+++..+++|+.|+|.+|.+...-...+.. .+..+|+|+.|+++.
T Consensus 184 ~~~leevr~~qN~I~-------~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak------aL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIR-------PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK------ALSSWPHLRELNLGD 250 (382)
T ss_pred ccccceEEEeccccc-------CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH------Hhcccchheeecccc
Confidence 556666666666541 1112344455666666666666666543200000000 123345666666666
Q ss_pred ccCceEeCcccccccccccCcccceeecccc
Q 039852 618 MKRVKKVGDEFLGVEIIIAFPKLKSLLIEDL 648 (731)
Q Consensus 618 ~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~ 648 (731)
|. ++.-+...+...-...+|+|+.|.+.++
T Consensus 251 cl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 251 CL-LENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred cc-cccccHHHHHHHHhccCCCCceeccCcc
Confidence 54 2222211111100123566666655554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=1.1e-07 Score=87.76 Aligned_cols=105 Identities=28% Similarity=0.345 Sum_probs=31.9
Q ss_pred hhccccccEEeecCCcccccccccc-CCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC-CCCCC
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLC-ELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG-RLTGL 482 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~-~L~~L 482 (731)
+.+...+|.|+|+++.|..+. .++ .|.+|+.|++++ +.+..++ ++..|++|+.|++++| .+..+++++. .+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 344557899999999988774 565 578899999999 5577775 5788999999999988 6666655553 57788
Q ss_pred CccCceEeCCCCCcCCCcccccccccCCCCCCccccc
Q 039852 483 RTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIR 519 (731)
Q Consensus 483 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~ 519 (731)
+.|++.++.... ...+..|..+++|+.|++.
T Consensus 91 ~~L~L~~N~I~~------l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 91 QELYLSNNKISD------LNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp -EEE-TTS---S------CCCCGGGGG-TT--EEE-T
T ss_pred CEEECcCCcCCC------hHHhHHHHcCCCcceeecc
Confidence 887764333221 2233444445555555444
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.5e-08 Score=97.69 Aligned_cols=215 Identities=17% Similarity=0.176 Sum_probs=131.5
Q ss_pred hhhhccccccEEeecCCccccccc--cccCCCceeEEeccCCcCccc---CcccccCCCCcceeeccCCccccccccccC
Q 039852 403 RNIEKLVHLRYLNLSGQDIVQLSE--TLCELYILEKLDISYCMDLEE---LPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 403 ~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~c~~l~~---lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
..=.++..||...|.++.+...+. ....|.+++.|||+. +.+.. +-.-...|++|+.|+++.|. +... ++
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~---~~ 189 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNF---IS 189 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhccccccc-ccCC---cc
Confidence 334578889999999998887774 677888999999988 43322 22335578888888888772 2110 00
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCccc
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 557 (731)
+ .. -. .+.+|+.|.++.|.-. .......+..+++|+.|.|..|....
T Consensus 190 s-------------~~----------~~---~l~~lK~L~l~~CGls---~k~V~~~~~~fPsl~~L~L~~N~~~~---- 236 (505)
T KOG3207|consen 190 S-------------NT----------TL---LLSHLKQLVLNSCGLS---WKDVQWILLTFPSLEVLYLEANEIIL---- 236 (505)
T ss_pred c-------------cc----------hh---hhhhhheEEeccCCCC---HHHHHHHHHhCCcHHHhhhhcccccc----
Confidence 0 00 00 2334444555544321 12233345577899999999884300
Q ss_pred CCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccc-ccccccc
Q 039852 558 RKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFL-GVEIIIA 636 (731)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~-~~~~~~~ 636 (731)
...... .-+..|++|+|++|.+.. ++. .+..+.||.|..|.++.|. +..+..--. .......
T Consensus 237 -~~~~~~------~i~~~L~~LdLs~N~li~-~~~--------~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 237 -IKATST------KILQTLQELDLSNNNLID-FDQ--------GYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT 299 (505)
T ss_pred -eecchh------hhhhHHhhccccCCcccc-ccc--------ccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence 001111 234678999999998876 553 3457889999999998754 433321110 0111368
Q ss_pred CcccceeeccccccccccccccccccccccccCcccceeeecc
Q 039852 637 FPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKW 679 (731)
Q Consensus 637 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~ 679 (731)
||+|+.|.+..+ ++.+|+.-... ..+++|+.|.+..
T Consensus 300 f~kL~~L~i~~N-~I~~w~sl~~l------~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 300 FPKLEYLNISEN-NIRDWRSLNHL------RTLENLKHLRITL 335 (505)
T ss_pred cccceeeecccC-ccccccccchh------hccchhhhhhccc
Confidence 999999999987 56667654432 2678888887654
No 37
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.27 E-value=1.5e-06 Score=77.46 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=65.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhc---ccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKR---EFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES 280 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 280 (731)
+-+++.|+|..|+|||++++.+.++..-.. .-..++|+.++...+...+...++.++........+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 457899999999999999999998532110 12457799998888999999999999987765545566666777777
Q ss_pred hCCCc-eEEEehhhHH
Q 039852 281 IAGKR-FLLVLDDVML 295 (731)
Q Consensus 281 l~~kr-~llvlDdvw~ 295 (731)
+...+ .+||+||+-.
T Consensus 83 l~~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADH 98 (131)
T ss_dssp HHHCTEEEEEEETTHH
T ss_pred HHhcCCeEEEEeChHh
Confidence 76554 5999999864
No 38
>PTZ00202 tuzin; Provisional
Probab=98.23 E-value=9.3e-05 Score=76.41 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=72.9
Q ss_pred cCcCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHH
Q 039852 173 SLIDEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRI 252 (731)
Q Consensus 173 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 252 (731)
.+.+...++||+.+...+...|...+. ...+++.|.|+.|.|||||++.+..... ..+++.-.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHH
Confidence 444567899999999999998865443 2356999999999999999999997432 112222222 67999
Q ss_pred HHHHHHHccCCCCCh--hhHHHHHHHHHHHh-C-CCceEEEe
Q 039852 253 AKAMLEALTGSTSNL--DALQSLLISIDESI-A-GKRFLLVL 290 (731)
Q Consensus 253 ~~~i~~~~~~~~~~~--~~~~~~~~~l~~~l-~-~kr~llvl 290 (731)
++.++.+++.+.... +-...+.+.+.+.- . |++.+||+
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 999999999743322 23344444444332 3 67777665
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.21 E-value=6.2e-07 Score=96.65 Aligned_cols=88 Identities=32% Similarity=0.409 Sum_probs=52.3
Q ss_pred ccchhhhhccc-cccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 399 PKIPRNIEKLV-HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 399 ~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
..+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+++|+.|++++| .+..+|..++
T Consensus 129 ~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~ 206 (394)
T COG4886 129 TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIE 206 (394)
T ss_pred ccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCC-ccccCchhhh
Confidence 34555555553 66666666666666666666666666666666 446666665556666666666666 5555665555
Q ss_pred CCCCCCccCce
Q 039852 478 RLTGLRTLGEF 488 (731)
Q Consensus 478 ~L~~L~~L~~~ 488 (731)
.+..|++|.+.
T Consensus 207 ~~~~L~~l~~~ 217 (394)
T COG4886 207 LLSALEELDLS 217 (394)
T ss_pred hhhhhhhhhhc
Confidence 55555555543
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6e-08 Score=92.99 Aligned_cols=79 Identities=19% Similarity=0.109 Sum_probs=52.9
Q ss_pred cccEEeecCCccc--cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc--cCCCCCCCcc
Q 039852 410 HLRYLNLSGQDIV--QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG--IGRLTGLRTL 485 (731)
Q Consensus 410 ~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~--i~~L~~L~~L 485 (731)
.|++||||++.|+ .+..-++.+.+|+.|.+.+...-..+-..|.+-.+|+.|+++.|..++..... +.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888899888876 45555677788888888885433445566778888888888888555432221 3455555555
Q ss_pred Cce
Q 039852 486 GEF 488 (731)
Q Consensus 486 ~~~ 488 (731)
++.
T Consensus 266 Nls 268 (419)
T KOG2120|consen 266 NLS 268 (419)
T ss_pred Cch
Confidence 553
No 41
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.13 E-value=7.8e-06 Score=84.28 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=63.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC--CCHHHHHHHHHHHccCCCCCh---h---hHHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET--FDEFRIAKAMLEALTGSTSNL---D---ALQSLLIS 276 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~~~~~~~~~---~---~~~~~~~~ 276 (731)
-..++|+|.+|.|||||++.+++..... +|+..+||.+.+. .++.++++.++..+.....+. . -.+.....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4578999999999999999999964433 7999999999866 789999999965544322111 1 11222222
Q ss_pred HHHH-hCCCceEEEehhhH
Q 039852 277 IDES-IAGKRFLLVLDDVM 294 (731)
Q Consensus 277 l~~~-l~~kr~llvlDdvw 294 (731)
.... -.|++++|++|++-
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 2222 35899999999985
No 42
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.11 E-value=6.3e-06 Score=78.44 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=34.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhh
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVK 232 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~ 232 (731)
.+|||+++.+++...|. ... ....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~--~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ--SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS--S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHH--cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999996 222 3457999999999999999999999854444
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.11 E-value=1.5e-06 Score=93.67 Aligned_cols=180 Identities=21% Similarity=0.217 Sum_probs=126.1
Q ss_pred hhhhccccccEEeecCCccccccccccCCC-ceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCC
Q 039852 403 RNIEKLVHLRYLNLSGQDIVQLSETLCELY-ILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTG 481 (731)
Q Consensus 403 ~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 481 (731)
..+..+..+..|++.++.+.++|..++.+. +|+.|++++ +.+..+|..++.+++|+.|++++| .+..+|...+.+++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 445566889999999999999999999985 999999999 779999888999999999999999 77888887778888
Q ss_pred CCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcc
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNE 561 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 561 (731)
|+.|.+....... .......+..|..+.+.+-. .......+.++.++..|.+..+..
T Consensus 188 L~~L~ls~N~i~~--------l~~~~~~~~~L~~l~~~~N~-----~~~~~~~~~~~~~l~~l~l~~n~~---------- 244 (394)
T COG4886 188 LNNLDLSGNKISD--------LPPEIELLSALEELDLSNNS-----IIELLSSLSNLKNLSGLELSNNKL---------- 244 (394)
T ss_pred hhheeccCCcccc--------CchhhhhhhhhhhhhhcCCc-----ceecchhhhhcccccccccCCcee----------
Confidence 8888775443221 11111233446666655421 111223355666666666665544
Q ss_pred cHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCc
Q 039852 562 DDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRV 621 (731)
Q Consensus 562 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l 621 (731)
......+..+++|+.|+++++.+.. ++ .++.+.+|++|++++....
T Consensus 245 --~~~~~~~~~l~~l~~L~~s~n~i~~-i~-----------~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 245 --EDLPESIGNLSNLETLDLSNNQISS-IS-----------SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred --eeccchhccccccceeccccccccc-cc-----------cccccCccCEEeccCcccc
Confidence 1113455667778888888888765 33 3677888888888875533
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=3.7e-06 Score=63.34 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=50.3
Q ss_pred ccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCC
Q 039852 409 VHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGT 466 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~ 466 (731)
++|++|++++|.+..+|. .+..+++|++|++++ +.+..+|. .|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 478999999999999985 678999999999998 55777775 5799999999999998
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.09 E-value=5.4e-07 Score=86.55 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=51.1
Q ss_pred chhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~ 466 (731)
....+.-...|..||||+|.|+.+-+++.-++.++.|++++ +.+..+-. +..|.+|++||+++|
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGN 339 (490)
T ss_pred eEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccc
Confidence 33445556778899999999999999998899999999999 44554443 778889999999988
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=7e-07 Score=90.39 Aligned_cols=219 Identities=14% Similarity=0.083 Sum_probs=131.1
Q ss_pred cccccccccCCCceeEEeccCCcCcccCcc--cccCCCCcceeeccCCccccc---cccccCCCCCCCccCceEeCCCCC
Q 039852 421 IVQLSETLCELYILEKLDISYCMDLEELPE--GIKKLINMRHLLNDGTDTLRY---MVVGIGRLTGLRTLGEFHVSGGGG 495 (731)
Q Consensus 421 i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~---~p~~i~~L~~L~~L~~~~~~~~~~ 495 (731)
+.++..-=.++..|+...|++ +.+...+. ....|++++.|++++|- +.. +-.-+..|++|+.|++..+...
T Consensus 110 fDki~akQsn~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~-- 185 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLS-- 185 (505)
T ss_pred HHHHHHHhhhHHhhhheeecC-ccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccccccc--
Confidence 445555556888999999998 44666663 57789999999999872 211 1111334555555544221110
Q ss_pred cCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCC
Q 039852 496 VDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLD 575 (731)
Q Consensus 496 ~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 575 (731)
. ..+... -..+.+|+.|.|+.|+. ....+...+..+|+
T Consensus 186 ---------------------------~--~~~s~~---~~~l~~lK~L~l~~CGl----------s~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 186 ---------------------------N--FISSNT---TLLLSHLKQLVLNSCGL----------SWKDVQWILLTFPS 223 (505)
T ss_pred ---------------------------C--Cccccc---hhhhhhhheEEeccCCC----------CHHHHHHHHHhCCc
Confidence 0 000000 01457899999999987 23445555567799
Q ss_pred CceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccc
Q 039852 576 LKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWD 655 (731)
Q Consensus 576 L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 655 (731)
|+.|.+.+|.+.. .-. .+-.-+..|+.|+|++++.+. .+..-. .+.||.|+.|.++.+ .+.++.
T Consensus 224 l~~L~L~~N~~~~-~~~---------~~~~i~~~L~~LdLs~N~li~-~~~~~~----~~~l~~L~~Lnls~t-gi~si~ 287 (505)
T KOG3207|consen 224 LEVLYLEANEIIL-IKA---------TSTKILQTLQELDLSNNNLID-FDQGYK----VGTLPGLNQLNLSST-GIASIA 287 (505)
T ss_pred HHHhhhhcccccc-eec---------chhhhhhHHhhccccCCcccc-cccccc----cccccchhhhhcccc-Ccchhc
Confidence 9999999986432 111 112346789999999977443 332111 368999999999887 455554
Q ss_pred cccccccccccccCcccceeeecccccCcCCCC--CCCCCCCccEEEEcc
Q 039852 656 YGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD--YIHQTTTLKELRILM 703 (731)
Q Consensus 656 ~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~--~~~~l~~L~~L~l~~ 703 (731)
....+. ......||+|++|.+..+ ++..++. .+..+++|+.|.+..
T Consensus 288 ~~d~~s-~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 288 EPDVES-LDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CCCccc-hhhhcccccceeeecccC-ccccccccchhhccchhhhhhccc
Confidence 333210 001227999999999885 4555542 244456666665443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=7.5e-08 Score=92.32 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=81.7
Q ss_pred ccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeee
Q 039852 505 ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYY 584 (731)
Q Consensus 505 ~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 584 (731)
..+.+-.+|+.|+++.+..+.. .+....+.+|+.|..|+|+||..... ........+ .++|..|+|+||
T Consensus 228 ~~iAkN~~L~~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~l~~~-------~Vtv~V~hi--se~l~~LNlsG~ 296 (419)
T KOG2120|consen 228 NTIAKNSNLVRLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCFLFTE-------KVTVAVAHI--SETLTQLNLSGY 296 (419)
T ss_pred HHHhccccceeeccccccccch--hHHHHHHHhhhhHhhcCchHhhccch-------hhhHHHhhh--chhhhhhhhhhh
Confidence 3444445566666666555432 33444577889999999999976110 011111222 368899999987
Q ss_pred cCCCCCccchhhcccCCCC-CCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccc
Q 039852 585 RGNTVFRSLLVQKLRAAAS-FGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGN 663 (731)
Q Consensus 585 ~~~~~lp~~~~~~L~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 663 (731)
.-.- .-+ .+.. ...+|+|.+|+|+.|..++. ..+.. ...|+.|++|.++.|..+---..-
T Consensus 297 rrnl-~~s-------h~~tL~~rcp~l~~LDLSD~v~l~~---~~~~~--~~kf~~L~~lSlsRCY~i~p~~~~------ 357 (419)
T KOG2120|consen 297 RRNL-QKS-------HLSTLVRRCPNLVHLDLSDSVMLKN---DCFQE--FFKFNYLQHLSLSRCYDIIPETLL------ 357 (419)
T ss_pred Hhhh-hhh-------HHHHHHHhCCceeeeccccccccCc---hHHHH--HHhcchheeeehhhhcCCChHHee------
Confidence 6421 111 1111 24578888888888776653 11100 136777888877777432110000
Q ss_pred cccccCcccceeeecccc
Q 039852 664 TVIDIMPRLSSFEIKWCP 681 (731)
Q Consensus 664 ~~~~~~p~L~~L~i~~c~ 681 (731)
-+...|+|.+|++.+|-
T Consensus 358 -~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 358 -ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -eeccCcceEEEEecccc
Confidence 12267778888777764
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=7.5e-07 Score=85.57 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=20.6
Q ss_pred chhhhhccccccEEeecCCccccccccccCCCceeEEeccC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISY 441 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~ 441 (731)
+|-.+.-+++|..+.+|.|.-..+-.-...=+.|+++.+++
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeec
Confidence 34344445666666666665443322222224566666655
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.00 E-value=3.3e-06 Score=77.93 Aligned_cols=130 Identities=16% Similarity=0.229 Sum_probs=41.2
Q ss_pred ccccccCCceEEEEecCCCCcccCCcccHHHHhhcCC-CCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCccee
Q 039852 535 LDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALR-PPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKL 613 (731)
Q Consensus 535 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L 613 (731)
+.+..+++.|+|.+|.. ...+.+. .+.+|+.|++++|.... + +.+..+++|+.|
T Consensus 15 ~~n~~~~~~L~L~~n~I-------------~~Ie~L~~~l~~L~~L~Ls~N~I~~-l-----------~~l~~L~~L~~L 69 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI-------------STIENLGATLDKLEVLDLSNNQITK-L-----------EGLPGLPRLKTL 69 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--------------TT----TT--EE
T ss_pred ccccccccccccccccc-------------ccccchhhhhcCCCEEECCCCCCcc-c-----------cCccChhhhhhc
Confidence 33445677788877765 2234454 35678888888877655 3 235567888888
Q ss_pred eeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCC----C
Q 039852 614 HIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD----Y 689 (731)
Q Consensus 614 ~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~----~ 689 (731)
+++++ .++.++..+. ..||+|++|+++++ ++.++..-.. +..+|+|+.|++.++|--.. +. .
T Consensus 70 ~L~~N-~I~~i~~~l~-----~~lp~L~~L~L~~N-~I~~l~~l~~------L~~l~~L~~L~L~~NPv~~~-~~YR~~v 135 (175)
T PF14580_consen 70 DLSNN-RISSISEGLD-----KNLPNLQELYLSNN-KISDLNELEP------LSSLPKLRVLSLEGNPVCEK-KNYRLFV 135 (175)
T ss_dssp E--SS----S-CHHHH-----HH-TT--EEE-TTS----SCCCCGG------GGG-TT--EEE-TT-GGGGS-TTHHHHH
T ss_pred ccCCC-CCCccccchH-----HhCCcCCEEECcCC-cCCChHHhHH------HHcCCCcceeeccCCcccch-hhHHHHH
Confidence 88764 3666644321 25788888888765 4554433211 22678888888887764322 21 1
Q ss_pred CCCCCCccEEEEcc
Q 039852 690 IHQTTTLKELRILM 703 (731)
Q Consensus 690 ~~~l~~L~~L~l~~ 703 (731)
+..+|+|+.||-..
T Consensus 136 i~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 136 IYKLPSLKVLDGQD 149 (175)
T ss_dssp HHH-TT-SEETTEE
T ss_pred HHHcChhheeCCEE
Confidence 34466676666443
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.97 E-value=6.3e-06 Score=93.27 Aligned_cols=78 Identities=33% Similarity=0.485 Sum_probs=43.5
Q ss_pred cchhhhhccccccEEeecCCccc-cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIV-QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
.+|..|++|.+|++|+|++|.+. .+|..+++|.+|++|+|++|.....+|..+++|++|++|++++|.....+|..++
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 45555555566666666655554 5555555566666666655444445555555566666666655543344555443
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.95 E-value=4.5e-05 Score=69.25 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=57.7
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHc
Q 039852 181 CGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEAL 260 (731)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~ 260 (731)
+|++.....+...+... ..+.+.|+|..|+||||+++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 46778888888887632 346888999999999999999999532 222345666555443322211111100
Q ss_pred cCCCCChhhHHHHHHHHHHHhCCCceEEEehhhHH
Q 039852 261 TGSTSNLDALQSLLISIDESIAGKRFLLVLDDVML 295 (731)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~l~~kr~llvlDdvw~ 295 (731)
............+..++|+||++.
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhh
Confidence 011112223345678999999984
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=3.4e-06 Score=95.03 Aligned_cols=135 Identities=24% Similarity=0.195 Sum_probs=94.8
Q ss_pred cccccEEeecCCcc--cccccccc-CCCceeEEeccCCcCc--ccCcccccCCCCcceeeccCCccccccccccCCCCCC
Q 039852 408 LVHLRYLNLSGQDI--VQLSETLC-ELYILEKLDISYCMDL--EELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGL 482 (731)
Q Consensus 408 L~~Lr~L~L~~~~i--~~lp~~i~-~L~~L~~L~l~~c~~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L 482 (731)
-.+|++|+++|... ..-|..++ .|+.|+.|.+.+ ..+ ..+-.-..++++|+.||++++ .+..+ .||++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccH
Confidence 45899999998652 24455565 578999999988 433 223334568899999999998 55555 789999999
Q ss_pred CccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCCh--hhhhhccccccccCCceEEEEecC
Q 039852 483 RTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDV--GEAKRLELDKKKYLSYLRLEFDKK 551 (731)
Q Consensus 483 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~--~~~~~~~l~~~~~L~~L~L~~~~~ 551 (731)
+.|...+..... ...+.+|-+|++|+.|+++.-...... .......-..+++|+.|+.++...
T Consensus 198 q~L~mrnLe~e~------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 198 QVLSMRNLEFES------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccCCCCCc------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999988776664 456778888999999999864443222 111122223477888888887655
No 53
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.88 E-value=4e-05 Score=80.48 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=57.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHH
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAK 254 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 254 (731)
.++++.++..+.++..|.. -+.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 4588889999999999873 34677899999999999999998655455788899999999998777654
No 54
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.88 E-value=1.3e-05 Score=79.46 Aligned_cols=43 Identities=28% Similarity=0.262 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 180 ICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++||+++.++|.+++..+ ..+.+.|+|..|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH
Confidence 689999999999998743 3568999999999999999999984
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0001 Score=76.99 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=84.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccc--eEEEEEeCCCCCHHHHHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFH--KILWACVSETFDEFRIAK 254 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~ 254 (731)
++.+.+|+++.+++...|..--.+ ....-+-|+|..|.|||+.++.|.+. ++.... ..++|+.-....+.++..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 334999999999999887654321 11222889999999999999999994 433321 168888888899999999
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHHHhC--CCceEEEehhhHH
Q 039852 255 AMLEALTGSTSNLDALQSLLISIDESIA--GKRFLLVLDDVML 295 (731)
Q Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~llvlDdvw~ 295 (731)
.|+.+++..........+....+.+.+. ++.+++|||++-.
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 9999997544444445555566666664 6889999999854
No 56
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.85 E-value=0.00028 Score=85.11 Aligned_cols=187 Identities=17% Similarity=0.238 Sum_probs=105.3
Q ss_pred HHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC-CCCHHHHHHHHHHHccCCCCC-
Q 039852 189 ELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE-TFDEFRIAKAMLEALTGSTSN- 266 (731)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~~~~~~~~- 266 (731)
++.+.|... ...+++.|+|++|.||||++.....+ ++.++|+++.. .-++..+...++..+......
T Consensus 21 rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~ 89 (903)
T PRK04841 21 RLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGH 89 (903)
T ss_pred HHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcc
Confidence 455555422 25789999999999999999987752 23699999964 456677777777766421110
Q ss_pred ---h---------hhHHHHHHHHHHHhC--CCceEEEehhhHH-------HHH---HHHh-------cCCCC--------
Q 039852 267 ---L---------DALQSLLISIDESIA--GKRFLLVLDDVML-------VLF---KRLA-------FFGRS-------- 307 (731)
Q Consensus 267 ---~---------~~~~~~~~~l~~~l~--~kr~llvlDdvw~-------~lf---~~~a-------f~~~~-------- 307 (731)
. .+.......+-..+. +.+++||+||+.+ .++ .... .....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 90 CSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHh
Confidence 0 112222333333332 6789999999844 010 0000 00000
Q ss_pred ---------------CcchhhH-------------HHHHHHHHHHcCCCchHHHHHHHHhcCCCC-HHHHHHHHcccccc
Q 039852 308 ---------------TEKCEKL-------------EQIGQRIARKCKGLPLAVKTVRSLMSSKKT-EEEWKRILNSDLWK 358 (731)
Q Consensus 308 ---------------~~~~~~l-------------~~~~~~i~~~c~glPlai~~i~~~l~~~~~-~~~w~~~~~~~~~~ 358 (731)
.-...+. .+....|.+.|+|.|+++..++..++.... .... . +.
T Consensus 170 l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~----~~ 242 (903)
T PRK04841 170 LRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---A----RR 242 (903)
T ss_pred HHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---h----Hh
Confidence 0000111 123467899999999999988877654321 1100 0 01
Q ss_pred ccc-ccccchhhhhh-hccCCcHHHHHHHHHhhcccC
Q 039852 359 VEE-IEKGVLTPLRL-SYNDLPSRVKRCFSYCAIFVN 393 (731)
Q Consensus 359 ~~~-~~~~i~~~L~l-sy~~L~~~~k~cf~~~~~f~~ 393 (731)
+.. ....+...+.- -+..+|+..+..+...++++.
T Consensus 243 ~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~ 279 (903)
T PRK04841 243 LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS 279 (903)
T ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc
Confidence 111 01123333332 367899999998888888765
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.5e-05 Score=54.87 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=29.4
Q ss_pred ccccEEeecCCccccccccccCCCceeEEeccCCcCcccCc
Q 039852 409 VHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELP 449 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp 449 (731)
++|++|+|++|.|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3688888888888888877888888888888885 455544
No 58
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.82 E-value=0.00039 Score=77.82 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=77.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhh---hcccc--eEEEEEeCCCCCHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEV---KREFH--KILWACVSETFDEF 250 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~ 250 (731)
.++.++||++++++|...|...-.. ...-.++-|.|..|.|||+.++.|.+...- +.... .+++|....-.+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 3467899999999999988754321 123468899999999999999999874321 11222 24556666666788
Q ss_pred HHHHHHHHHccCCCCC-hhhHHHHHHHHHHHh-C--CCceEEEehhhHH
Q 039852 251 RIAKAMLEALTGSTSN-LDALQSLLISIDESI-A--GKRFLLVLDDVML 295 (731)
Q Consensus 251 ~i~~~i~~~~~~~~~~-~~~~~~~~~~l~~~l-~--~kr~llvlDdvw~ 295 (731)
.+...|..++.+..+. ..........+...+ . +...+|||||+..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 8888888888543322 222223334444443 2 2245899999853
No 59
>PLN03150 hypothetical protein; Provisional
Probab=97.75 E-value=2.9e-05 Score=87.97 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=71.3
Q ss_pred cccEEeecCCccc-cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCce
Q 039852 410 HLRYLNLSGQDIV-QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEF 488 (731)
Q Consensus 410 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 488 (731)
.++.|+|++|.+. .+|..+++|++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 789999999999999999977667899999999999999999996666788889999999999875
Q ss_pred EeC
Q 039852 489 HVS 491 (731)
Q Consensus 489 ~~~ 491 (731)
.+.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=8.1e-05 Score=77.34 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=54.8
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCcccccccccc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGI 476 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 476 (731)
+..+.++++|++++|.++.+|. + ..+|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccccc
Confidence 5557899999999999999982 2 2469999999999999999766 3689999999997777777653
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00019 Score=72.93 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=54.5
Q ss_pred cCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHH
Q 039852 175 IDEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAK 254 (731)
Q Consensus 175 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 254 (731)
+....++|.+..+.++++ ..++.-.-.||++|+||||||+.+.. .....|.. ++..++-.+=++
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-----~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-----LSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-----eccccccHHHHH
Confidence 344456665555555554 34677788999999999999999998 45444443 233332222222
Q ss_pred HHHHHccCCCCChhhHHHHHHHH-HHHhCCCceEEEehhhHH
Q 039852 255 AMLEALTGSTSNLDALQSLLISI-DESIAGKRFLLVLDDVML 295 (731)
Q Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~l-~~~l~~kr~llvlDdvw~ 295 (731)
++++ .- .....|++.+|.+|+|..
T Consensus 91 ~i~e-----------------~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 91 EIIE-----------------EARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred HHHH-----------------HHHHHHhcCCceEEEEehhhh
Confidence 2222 12 223458999999999965
No 62
>PF05729 NACHT: NACHT domain
Probab=97.64 E-value=0.00014 Score=67.57 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=50.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcc----cceEEEEEeCCCCCHH---HHHHHHHHHccCCCCChhhHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKRE----FHKILWACVSETFDEF---RIAKAMLEALTGSTSNLDALQSLLISID 278 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~~~~~~~~~~~~~~~~~~l~ 278 (731)
+++.|+|.+|+||||+++.++.+-..... +...+|.......+.. .+...+..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 58899999999999999999985443332 4456676665544332 343344333332211 1111 111
Q ss_pred H-HhCCCceEEEehhhHH
Q 039852 279 E-SIAGKRFLLVLDDVML 295 (731)
Q Consensus 279 ~-~l~~kr~llvlDdvw~ 295 (731)
. .-..+++++|+|++.+
T Consensus 75 ~~~~~~~~~llilDglDE 92 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDE 92 (166)
T ss_pred HHHHcCCceEEEEechHh
Confidence 1 2357899999999864
No 63
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.63 E-value=8.9e-05 Score=55.71 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=16.0
Q ss_pred cCcccceeeecccccCcCCC-CCCCCCCCccEEEEccC
Q 039852 668 IMPRLSSFEIKWCPKLKALP-DYIHQTTTLKELRILMC 704 (731)
Q Consensus 668 ~~p~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~l~~c 704 (731)
.+++|++|++++ +.++.+| ..+..+++|++|++++|
T Consensus 23 ~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444443 2334443 23344555555555444
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=6.4e-05 Score=78.07 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=33.8
Q ss_pred ccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceee
Q 039852 535 LDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLH 614 (731)
Q Consensus 535 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~ 614 (731)
+..+.++..|+++.|.. ...+ .-+++|++|.+++|.....+|.. + .++|++|.
T Consensus 48 ~~~~~~l~~L~Is~c~L------------~sLP---~LP~sLtsL~Lsnc~nLtsLP~~----------L--P~nLe~L~ 100 (426)
T PRK15386 48 IEEARASGRLYIKDCDI------------ESLP---VLPNELTEITIENCNNLTTLPGS----------I--PEGLEKLT 100 (426)
T ss_pred HHHhcCCCEEEeCCCCC------------cccC---CCCCCCcEEEccCCCCcccCCch----------h--hhhhhheE
Confidence 44556677777766643 1111 12346777777665554434431 1 24667777
Q ss_pred eccccCceEeC
Q 039852 615 IWGMKRVKKVG 625 (731)
Q Consensus 615 L~~~~~l~~i~ 625 (731)
+++|..+..+|
T Consensus 101 Ls~Cs~L~sLP 111 (426)
T PRK15386 101 VCHCPEISGLP 111 (426)
T ss_pred ccCcccccccc
Confidence 77665554433
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.54 E-value=0.00029 Score=72.95 Aligned_cols=50 Identities=28% Similarity=0.390 Sum_probs=39.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+++.++.+..++...... ......+-++|+.|+|||+||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999998888643221 123556789999999999999999984
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.49 E-value=0.00042 Score=72.33 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+++.++.+..++...... +.....+-|+|+.|+||||+|+.+.+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 457999999999988777542211 224567789999999999999999984
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.48 E-value=0.00021 Score=67.64 Aligned_cols=56 Identities=27% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhccc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREF 235 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 235 (731)
-+++||.+.-++++.-++..... .++.+.-+-.||++|+||||||+.+.+ .....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 45899988777775544432111 023577888999999999999999999 444444
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=2.4e-05 Score=84.55 Aligned_cols=177 Identities=24% Similarity=0.239 Sum_probs=101.6
Q ss_pred CccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
+..+-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++ +.+..+. ++..++.|+.|++++| .+..+ .++.
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~-~~~~ 159 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGN-LISDI-SGLE 159 (414)
T ss_pred hhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheeccC-cchhc-cCCc
Confidence 33444457778888888888888888876578888888888888 5676664 4667777888888888 44333 3345
Q ss_pred CCCCCCccCceEeCCCCCcCCCccccccc--ccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCc
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLES--LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGE 555 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 555 (731)
.+++|+.+++.++... .++. +..+.+|+.+.+.+-... ....+..+..+..+++..|..
T Consensus 160 ~l~~L~~l~l~~n~i~---------~ie~~~~~~~~~l~~l~l~~n~i~------~i~~~~~~~~l~~~~l~~n~i---- 220 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIV---------DIENDELSELISLEELDLGGNSIR------EIEGLDLLKKLVLLSLLDNKI---- 220 (414)
T ss_pred cchhhhcccCCcchhh---------hhhhhhhhhccchHHHhccCCchh------cccchHHHHHHHHhhcccccc----
Confidence 5666666665443322 2223 355555555554431110 011122223333334444433
Q ss_pred ccCCcccHHHHhhcCCCCCC--CceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecc
Q 039852 556 ETRKNEDDQLLLEALRPPLD--LKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWG 617 (731)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~ 617 (731)
...+++..... |+.+.+.++.... .| ..+..++++..|++.+
T Consensus 221 ---------~~~~~l~~~~~~~L~~l~l~~n~i~~-~~----------~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 221 ---------SKLEGLNELVMLHLRELYLSGNRISR-SP----------EGLENLKNLPVLDLSS 264 (414)
T ss_pred ---------eeccCcccchhHHHHHHhcccCcccc-cc----------ccccccccccccchhh
Confidence 12223333333 7788888877655 32 1244566777777765
No 69
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.42 E-value=0.0011 Score=66.80 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=79.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAM 256 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 256 (731)
.+.+.+|+.++..+..++...+. .-...|-|.|-.|.|||.+.+++++... -..+|+++-..|..+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 45788999999999988864432 1244558999999999999999999542 247899999999999999999
Q ss_pred HHHccCCCCCh-------hhHHHHHHHHHH--HhC--CCceEEEehhhHH
Q 039852 257 LEALTGSTSNL-------DALQSLLISIDE--SIA--GKRFLLVLDDVML 295 (731)
Q Consensus 257 ~~~~~~~~~~~-------~~~~~~~~~l~~--~l~--~kr~llvlDdvw~ 295 (731)
+.+....+.+. ..+......+.+ ... ++.++||||++..
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 99985222111 222333333333 122 5689999999854
No 70
>PRK08118 topology modulation protein; Reviewed
Probab=97.40 E-value=6.9e-05 Score=69.45 Aligned_cols=35 Identities=29% Similarity=0.678 Sum_probs=28.6
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhh-cccceEEE
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVK-REFHKILW 240 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~w 240 (731)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999965544 56777775
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.38 E-value=4.3e-05 Score=82.59 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=47.7
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc-cCCCCCCC
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLR 483 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~ 483 (731)
+..+.+|++|+|++|.|+.+. .+..|..|+.|++.+ +.+..++ .+..+.+|+.+++++| .+..+... ...+.+|+
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDIS-GLESLKSLKLLDLSYN-RIVDIENDELSELISLE 189 (414)
T ss_pred hhhhhcchheecccccccccc-chhhccchhhheecc-Ccchhcc-CCccchhhhcccCCcc-hhhhhhhhhhhhccchH
Confidence 566777777777777777663 456666677777777 4455443 3455777777777776 33333322 34555555
Q ss_pred ccCc
Q 039852 484 TLGE 487 (731)
Q Consensus 484 ~L~~ 487 (731)
.+.+
T Consensus 190 ~l~l 193 (414)
T KOG0531|consen 190 ELDL 193 (414)
T ss_pred HHhc
Confidence 5554
No 72
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.38 E-value=0.00019 Score=49.43 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=32.0
Q ss_pred CceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccc
Q 039852 432 YILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMV 473 (731)
Q Consensus 432 ~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 473 (731)
++|++|++++ +.+..+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4799999999 568899988999999999999999 455443
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.35 E-value=0.00033 Score=75.41 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=33.6
Q ss_pred CccccchhHHHH---HHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNE---LLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+++||++..+.+ +.+++.. .....+-++|.+|+||||+|+.+++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 367887766544 6666642 24557788999999999999999984
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.32 E-value=9.6e-06 Score=81.93 Aligned_cols=269 Identities=15% Similarity=0.089 Sum_probs=162.2
Q ss_pred ccccEEeecCCc---cccccccccCCCceeEEeccCCcCcccC--cccccCCCCcceeeccCCccccccccc--cCCCCC
Q 039852 409 VHLRYLNLSGQD---IVQLSETLCELYILEKLDISYCMDLEEL--PEGIKKLINMRHLLNDGTDTLRYMVVG--IGRLTG 481 (731)
Q Consensus 409 ~~Lr~L~L~~~~---i~~lp~~i~~L~~L~~L~l~~c~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~--i~~L~~ 481 (731)
-.||.|.|+|+. ...+-..-.++++++.|++.+|.++..- -.--..+.+|+||++..|..++...-. ...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 367888888886 3344444567899999999999977532 122346899999999998665542211 234566
Q ss_pred CCccCceEeCCCCCcCCCccccccc-ccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCc
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLES-LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKN 560 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 560 (731)
|..|++..+..-. +..++. .+...+|+.+...++...+. +++...=..+.-+..+++..+..
T Consensus 218 L~~lNlSwc~qi~------~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~--------- 280 (483)
T KOG4341|consen 218 LKYLNLSWCPQIS------GNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQ--------- 280 (483)
T ss_pred HHHhhhccCchhh------cCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhcc---------
Confidence 7777664443222 222222 23334444444444443321 12111112233344444444432
Q ss_pred ccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccc
Q 039852 561 EDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKL 640 (731)
Q Consensus 561 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L 640 (731)
.++..++..-..+..|+.|+.+++...+..+-|-. -.+.++|+.|.+..|..++..+...++ ...+.|
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--------g~~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~L 348 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL--------GQHCHNLQVLELSGCQQFSDRGFTMLG----RNCPHL 348 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--------hcCCCceEEEeccccchhhhhhhhhhh----cCChhh
Confidence 11223333334567889999988876442332211 245799999999999988777655553 467899
Q ss_pred ceeeccccccccccccccccccccccccCcccceeeecccccCcCC-----CCCCCCCCCccEEEEccCchhHHhhc
Q 039852 641 KSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL-----PDYIHQTTTLKELRILMCGLLKERYR 712 (731)
Q Consensus 641 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l-----p~~~~~l~~L~~L~l~~c~~L~~~~~ 712 (731)
+.|++.+|.....-..... -.++|.|+.|.+++|..+++. ...-..+..|+.+++.+||.+.+..-
T Consensus 349 e~l~~e~~~~~~d~tL~sl------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASL------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhcccccceehhhhHhhh------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 9999888743332211111 117999999999999887765 33334577899999999998887654
No 75
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=2.3e-05 Score=75.67 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=39.4
Q ss_pred CCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCC
Q 039852 607 MPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL 686 (731)
Q Consensus 607 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l 686 (731)
+|++..+.+..|+ ++....+-. ...||.+.-|.+... ++.+|..-.. +..||+|..|.+.+.|-+..+
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~ek~----se~~p~~~~LnL~~~-~idswasvD~------Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESSEKG----SEPFPSLSCLNLGAN-NIDSWASVDA------LNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCc-ccchhhccc----CCCCCcchhhhhccc-ccccHHHHHH------HcCCchhheeeccCCcccccc
Confidence 4555656665554 332222111 134555555555543 4444443221 115677777777666655554
Q ss_pred CCC------CCCCCCccEEE
Q 039852 687 PDY------IHQTTTLKELR 700 (731)
Q Consensus 687 p~~------~~~l~~L~~L~ 700 (731)
-.+ +..+++++.|+
T Consensus 266 ~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cCCcceEEEEeeccceEEec
Confidence 321 34455555444
No 76
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.24 E-value=3.9e-05 Score=75.96 Aligned_cols=248 Identities=21% Similarity=0.131 Sum_probs=123.7
Q ss_pred hhhhhhhccCCcHHHHHHHHHhhcccCCCcCCccchhhhhccccccEEeecCCc----cccccccc-------cCCCcee
Q 039852 367 LTPLRLSYNDLPSRVKRCFSYCAIFVNRSSLTPKIPRNIEKLVHLRYLNLSGQD----IVQLSETL-------CELYILE 435 (731)
Q Consensus 367 ~~~L~lsy~~L~~~~k~cf~~~~~f~~rs~~~~~lp~~i~~L~~Lr~L~L~~~~----i~~lp~~i-------~~L~~L~ 435 (731)
+..+++|-+.+..+..+. +-+.+.+.+.||.-++|+-- ..++|+.+ -...+|+
T Consensus 32 ~~~l~lsgnt~G~EAa~~----------------i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARA----------------IAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred eEEEeccCCchhHHHHHH----------------HHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 444666666665544321 23344455566666665421 22444332 2334677
Q ss_pred EEeccCCcCcccCccc----ccCCCCcceeeccCCccccccc--------------cccCCCCCCCccCceEeCCCCCcC
Q 039852 436 KLDISYCMDLEELPEG----IKKLINMRHLLNDGTDTLRYMV--------------VGIGRLTGLRTLGEFHVSGGGGVD 497 (731)
Q Consensus 436 ~L~l~~c~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~~p--------------~~i~~L~~L~~L~~~~~~~~~~~~ 497 (731)
+||||.|-.-..-+.. +.++..|+||++.+|. +...- ..+++-..|+.+....+...+
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen--- 171 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN--- 171 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc---
Confidence 7777765433332222 4566777777777662 21110 011222334333332222111
Q ss_pred CCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCc
Q 039852 498 GRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLK 577 (731)
Q Consensus 498 ~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 577 (731)
......-..++..+.|..+.+..-.--+....+....+..+++|+.|+|..|.+. .......-+.++..++|+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft-------~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT-------LEGSVALAKALSSWPHLR 244 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh-------hHHHHHHHHHhcccchhe
Confidence 1111122334445566665555422222222345556788999999999988761 112234446677778999
Q ss_pred eEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecccc
Q 039852 578 KLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDL 648 (731)
Q Consensus 578 ~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~ 648 (731)
.|.+++|.....=-.-+.. .+ -...|+|+.|.+.+|. ++.=...... .+...-|.|+.|.+++|
T Consensus 245 El~l~dcll~~~Ga~a~~~---al--~~~~p~L~vl~l~gNe-It~da~~~la-~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVD---AL--KESAPSLEVLELAGNE-ITRDAALALA-ACMAEKPDLEKLNLNGN 308 (382)
T ss_pred eecccccccccccHHHHHH---HH--hccCCCCceeccCcch-hHHHHHHHHH-HHHhcchhhHHhcCCcc
Confidence 9999998765310000110 11 1237899999998764 2221111000 00134577777777776
No 77
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.24 E-value=0.0089 Score=59.59 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhh-----cccceEEEEEeCCCCCHHHHHHHHHHH
Q 039852 185 GERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVK-----REFHKILWACVSETFDEFRIAKAMLEA 259 (731)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~i~~~i~~~ 259 (731)
+..+++.+++.... ....+-+.|||..|.|||+++++....--.. ..+ .++.|.....++...+...|+.+
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHH
Confidence 33444444444322 3466789999999999999999988532111 111 47778888999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHhCC-CceEEEehhhHH
Q 039852 260 LTGSTSNLDALQSLLISIDESIAG-KRFLLVLDDVML 295 (731)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~l~~-kr~llvlDdvw~ 295 (731)
++...........+.....+.++. +-=+||+|++.+
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 998766555555555555556652 233678899866
No 78
>PF13173 AAA_14: AAA domain
Probab=97.19 E-value=0.00064 Score=60.06 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=43.5
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 284 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 284 (731)
-+++.|.|+.|+||||++++++.+.. ....+++++..+........ .+ ....+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 46899999999999999999998433 23456666555443211000 00 223333434447
Q ss_pred ceEEEehhhH
Q 039852 285 RFLLVLDDVM 294 (731)
Q Consensus 285 r~llvlDdvw 294 (731)
..++++|++-
T Consensus 62 ~~~i~iDEiq 71 (128)
T PF13173_consen 62 KKYIFIDEIQ 71 (128)
T ss_pred CcEEEEehhh
Confidence 7889999983
No 79
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.16 E-value=0.00087 Score=66.82 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=48.6
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
+.+.-+-.||.+|+||||||+.+.+..+... ..+|..|....-..=.++|+++.. -...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 3678889999999999999999998544332 445666554433333344443211 112356
Q ss_pred CCceEEEehhhHH
Q 039852 283 GKRFLLVLDDVML 295 (731)
Q Consensus 283 ~kr~llvlDdvw~ 295 (731)
++|..|.+|+|..
T Consensus 221 krkTilFiDEiHR 233 (554)
T KOG2028|consen 221 KRKTILFIDEIHR 233 (554)
T ss_pred cceeEEEeHHhhh
Confidence 7888999999964
No 80
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.13 E-value=0.0018 Score=66.33 Aligned_cols=179 Identities=23% Similarity=0.267 Sum_probs=105.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEE-EEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKIL-WACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
..|-+.++|.|||||||++-.+.. ++..|..-. +|....-.|...+...+...++....... .....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHHHHh
Confidence 578999999999999999988877 566776644 44444444555544445544554432211 12334566677
Q ss_pred CCceEEEehhhHH-------------------------------------------------HHHHHHhcCCCCC-cchh
Q 039852 283 GKRFLLVLDDVML-------------------------------------------------VLFKRLAFFGRST-EKCE 312 (731)
Q Consensus 283 ~kr~llvlDdvw~-------------------------------------------------~lf~~~af~~~~~-~~~~ 312 (731)
++|.++|+|+.-+ .+|...+-..... ....
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 8899999998643 2332222110000 0011
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCHHHHHHHHcccccccc-------cccccchhhhhhhccCCcHHHHHHH
Q 039852 313 KLEQIGQRIARKCKGLPLAVKTVRSLMSSKKTEEEWKRILNSDLWKVE-------EIEKGVLTPLRLSYNDLPSRVKRCF 385 (731)
Q Consensus 313 ~l~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~~w~~~~~~~~~~~~-------~~~~~i~~~L~lsy~~L~~~~k~cf 385 (731)
.-.....+|.++.+|.|++|...+...++-. ..+-...++.....+. --.......+..||.-|.......|
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~ 245 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALF 245 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHh
Confidence 1234567899999999999999988877643 2222222222111111 1123467788999988887666555
Q ss_pred HHhh
Q 039852 386 SYCA 389 (731)
Q Consensus 386 ~~~~ 389 (731)
.-++
T Consensus 246 ~rLa 249 (414)
T COG3903 246 GRLA 249 (414)
T ss_pred cchh
Confidence 4433
No 81
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.0011 Score=64.23 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=29.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
.-.+.|+|..|.||||++..+.. .....|+.+.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34678999999999999999987 46678877776644
No 82
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.012 Score=61.24 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=78.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
.+..++||+.++..+.+|+...-. .+...-+-|.|..|.|||.+...|+.+..-...=-+++++....-.....+...
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 355799999999999999876544 345678899999999999999999986433222123455555443456677777
Q ss_pred HHHHccCC-CCChhhHHHHHHHHHHHhCCC--ceEEEehhhHH
Q 039852 256 MLEALTGS-TSNLDALQSLLISIDESIAGK--RFLLVLDDVML 295 (731)
Q Consensus 256 i~~~~~~~-~~~~~~~~~~~~~l~~~l~~k--r~llvlDdvw~ 295 (731)
|...+... ...... .+.+..+.++..+. -+++|+|++..
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhH
Confidence 77766221 111111 44556666666654 48899998743
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=0.0003 Score=67.27 Aligned_cols=262 Identities=17% Similarity=0.060 Sum_probs=119.3
Q ss_pred cccccEEeecCCccc-----cccccccCCCceeEEeccCCcCcc----cCcc-------cccCCCCcceeeccCCccccc
Q 039852 408 LVHLRYLNLSGQDIV-----QLSETLCELYILEKLDISYCMDLE----ELPE-------GIKKLINMRHLLNDGTDTLRY 471 (731)
Q Consensus 408 L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~c~~l~----~lp~-------~i~~L~~L~~L~l~~~~~~~~ 471 (731)
+..+..++||+|.|. .+...|.+-.+|+.-+++. -... .+|. .+-+|++|+..++++|-....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 455556666666544 2333344445555555543 2111 1222 233556666666666533333
Q ss_pred cccc----cCCCCCCCccCceEeCCCCCcCCCccccccc------ccCCCCCCcccccCCCCCCChhhhhhccccccccC
Q 039852 472 MVVG----IGRLTGLRTLGEFHVSGGGGVDGRKACRLES------LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYL 541 (731)
Q Consensus 472 ~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~------l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L 541 (731)
.|+. |++-+.|..|.+.++..+..-.+..+..+.. ..+-+.|+...|..-.-.+.......+.+..-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 3332 4455555555554443332100000101111 11223455544432111111112222334444688
Q ss_pred CceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCc
Q 039852 542 SYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRV 621 (731)
Q Consensus 542 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l 621 (731)
+.+.+..|+... .......+.++..+.+|+.|+|.+|.++. ..+.... .. +..-+.|+.|.+..|- +
T Consensus 188 k~vki~qNgIrp------egv~~L~~~gl~y~~~LevLDlqDNtft~-~gS~~La--~a---l~~W~~lrEL~lnDCl-l 254 (388)
T COG5238 188 KEVKIQQNGIRP------EGVTMLAFLGLFYSHSLEVLDLQDNTFTL-EGSRYLA--DA---LCEWNLLRELRLNDCL-L 254 (388)
T ss_pred eeEEeeecCcCc------chhHHHHHHHHHHhCcceeeeccccchhh-hhHHHHH--HH---hcccchhhhccccchh-h
Confidence 899998887611 11234456677788899999999987654 2211100 01 2234568888888775 2
Q ss_pred eEeC-cccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcC
Q 039852 622 KKVG-DEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKA 685 (731)
Q Consensus 622 ~~i~-~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~ 685 (731)
..-+ ..++..-....+|+|..|.+.+...-........ ....--.++|-|..|.+.++ .+..
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~-l~~~e~~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS-LNEFEQDAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec-hhhhhhcccHHHHHHHHccC-cchh
Confidence 2212 1111111123567888877765421111100000 00000116788888877763 4443
No 84
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0053 Score=66.91 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=54.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRI 252 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 252 (731)
-+.+.+|.++-+++|++++.-..-.+.-+-+++..+|++|||||.+|+.|+. .....|-. ++|..-.|..+|
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeI 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEI 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhh
Confidence 4567899999999999998754432344678999999999999999999998 55444432 456666666554
No 85
>PRK04195 replication factor C large subunit; Provisional
Probab=96.94 E-value=0.0022 Score=70.56 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=41.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.++.++.+.+|+..-.. +...+.+-|+|..|+||||+|+.++++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34799999999999999865332 123678999999999999999999994
No 86
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0022 Score=70.06 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=50.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFR 251 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (731)
-+.+.+|.++.+++|++.|.-..-...-+-+++..||++|||||.|++.|+. .....|-. +++..--|..+
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAE 391 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAE 391 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHH
Confidence 4567899999999999998644321122447999999999999999999998 56555433 33444444433
No 87
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.90 E-value=0.0019 Score=57.87 Aligned_cols=86 Identities=21% Similarity=0.161 Sum_probs=44.5
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCC-
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK- 284 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k- 284 (731)
..+.|+|..|+||||+|+.+... ........+++..+........... ............... ....+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGEL-RLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHH-HHHHHHHHHHhcC
Confidence 47899999999999999999984 3222223444444433322222111 011111111111222 222334444433
Q ss_pred ceEEEehhhHH
Q 039852 285 RFLLVLDDVML 295 (731)
Q Consensus 285 r~llvlDdvw~ 295 (731)
..+|++|++..
T Consensus 79 ~~viiiDei~~ 89 (148)
T smart00382 79 PDVLILDEITS 89 (148)
T ss_pred CCEEEEECCcc
Confidence 48999999864
No 88
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.87 E-value=0.0013 Score=67.57 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=43.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
.+++|.++.++++++++.......+...+++.++|+.|.||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999987554323457899999999999999999999843
No 89
>PRK07261 topology modulation protein; Provisional
Probab=96.84 E-value=0.0024 Score=59.54 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=24.8
Q ss_pred EEeeeccCcchHHHHHHHHHcchhh-hcccceEEE
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEV-KREFHKILW 240 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~~~~w 240 (731)
.|.|+|++|+||||||+.+.....+ .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4899999999999999999864322 124455555
No 90
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.83 E-value=0.012 Score=68.77 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=40.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++||+.+.+.+...+..... ..-.|+.+.|..|+|||++++.|...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 368999999999998876654 24569999999999999999999983
No 91
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.82 E-value=0.0024 Score=72.72 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=33.0
Q ss_pred CccccchhHHH---HHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERN---ELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++++|.+..+. .+.+.+.. ....-+-++|++|+||||+|+.+++.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46888877664 34444442 24556789999999999999999983
No 92
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.80 E-value=0.0001 Score=79.69 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=31.0
Q ss_pred hhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~ 466 (731)
.+..|.+|+.|||++|.+..+|. +...++ |+.|++++ +.+..+ .++.+|++|++||++.|
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhh-hhHHhhhhhhccchhHh
Confidence 34445556666666666555553 122222 56666655 334443 24556666666666555
No 93
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.70 E-value=0.0037 Score=61.46 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeC
Q 039852 184 VGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVS 244 (731)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (731)
+..++.+.+++.. .....|-|+|..|+|||+||+.+++.. .......++++++
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~ 75 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHH
Confidence 4466666666541 245688899999999999999999843 2233445555543
No 94
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.69 E-value=0.0066 Score=71.33 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+++++++++.|.... ..-+-++|.+|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997543 223359999999999999999874
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=96.67 E-value=0.0029 Score=62.19 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=28.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVS 244 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (731)
.+.+.++|..|+|||+|++++++. .........|+++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 357899999999999999999995 33233455666653
No 96
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.67 E-value=0.00018 Score=61.55 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=69.6
Q ss_pred chhhhhccccccEEeecCCccccccccccCC-CceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQLSETLCEL-YILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
.+..+....+|...+|++|.+...|+.+... ..+.+|++.+ +.+..+|.++..++.|+.|+++.| .+...|.-|..|
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L 122 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPL 122 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHH
Confidence 4445667788889999999999999887754 4899999998 779999999999999999999998 667778777777
Q ss_pred CCCCccCc
Q 039852 480 TGLRTLGE 487 (731)
Q Consensus 480 ~~L~~L~~ 487 (731)
.+|-.|..
T Consensus 123 ~~l~~Lds 130 (177)
T KOG4579|consen 123 IKLDMLDS 130 (177)
T ss_pred HhHHHhcC
Confidence 76666654
No 97
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.66 E-value=0.0097 Score=69.47 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+++|.++.++++.+++......+..+-+++.++|..|+|||++|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999988765321111123458999999999999999999983
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.62 E-value=0.095 Score=59.29 Aligned_cols=61 Identities=28% Similarity=0.303 Sum_probs=43.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhccc---ceEEEEEeC
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREF---HKILWACVS 244 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs 244 (731)
++++|++..+..+.+.+.. .....+.|+|..|+||||+|+.+++.......+ ...-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 4689999999988877742 234579999999999999999999865433333 123455553
No 99
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.62 E-value=0.011 Score=61.08 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhc-ccce-EEEEEeCCCC-CHHHHHHHHHHHccCC
Q 039852 187 RNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKR-EFHK-ILWACVSETF-DEFRIAKAMLEALTGS 263 (731)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~~-~~~~i~~~i~~~~~~~ 263 (731)
..++++.+..-. .-..+.|+|..|+|||||++.+.+. +.. +=+. ++|+.+.+.. ++.++.+.+...+...
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 345777776432 2235699999999999999998884 322 2233 4777777655 6778888888777654
Q ss_pred CCCh---h--hHHHHHHHHHHHh--CCCceEEEehhhH
Q 039852 264 TSNL---D--ALQSLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 264 ~~~~---~--~~~~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
..+. . .........-+++ .|++++||+|++-
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 3221 1 1111112222222 5899999999984
No 100
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.61 E-value=0.011 Score=58.71 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=54.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhccc-ceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhh-----H
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREF-HKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDA-----L 270 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~-----~ 270 (731)
=.-++|+|..|+|||||++.++++ ++.+| +.++++-+.+... +.++.+++...-... ..+... .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 347899999999999999999994 44445 4466677777654 345666555421111 111111 1
Q ss_pred HHHHHHHHHHh---CCCceEEEehhhH
Q 039852 271 QSLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
......+-+++ .++.+|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11222344444 3899999999984
No 101
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.60 E-value=2.8e-05 Score=83.79 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=17.4
Q ss_pred hhhhhccccccEEeecCCcccc
Q 039852 402 PRNIEKLVHLRYLNLSGQDIVQ 423 (731)
Q Consensus 402 p~~i~~L~~Lr~L~L~~~~i~~ 423 (731)
|-+|..+..||.|.|+++++..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CceeccccceeeEEecCcchhh
Confidence 5567778888999998888765
No 102
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0018 Score=62.95 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=33.8
Q ss_pred hhccccccEEeecCCccccccccc-cCCCceeEEeccCCcCc--ccCcccccCCCCcceeeccCC
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETL-CELYILEKLDISYCMDL--EELPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~c~~l--~~lp~~i~~L~~L~~L~l~~~ 466 (731)
..+|++|++|+|+.|.+..--.+. -.+.+|++|-|.+ +.+ .........+++++.|+++.|
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 356677777777777644221222 2455677777766 433 233333455666666666655
No 103
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.53 E-value=0.0013 Score=74.57 Aligned_cols=139 Identities=24% Similarity=0.177 Sum_probs=88.1
Q ss_pred CceeEEeccCCcCc-ccCccccc-CCCCcceeeccCCcccc-ccccccCCCCCCCccCceEeCCCCCcCCCccccccccc
Q 039852 432 YILEKLDISYCMDL-EELPEGIK-KLINMRHLLNDGTDTLR-YMVVGIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLK 508 (731)
Q Consensus 432 ~~L~~L~l~~c~~l-~~lp~~i~-~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 508 (731)
.+||+||++|...+ ..-|..++ .|++|++|.+.+-.... .+-.-..++++|..|+..+... ..+..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---------~nl~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---------SNLSGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---------cCcHHHh
Confidence 68999999985444 23344454 58999999998742211 1222245667777776644332 2456777
Q ss_pred CCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCC
Q 039852 509 NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGN 587 (731)
Q Consensus 509 ~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 587 (731)
+|++|+.|.+.+++-... .....+.++++|+.|++|...... ........++.-..+|+|+.|+.++....
T Consensus 193 ~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~-----~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNND-----DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccccHHHHhccCCCCCch---hhHHHHhcccCCCeeecccccccc-----chHHHHHHHHhcccCccccEEecCCcchh
Confidence 888888888888654321 112245678999999998776521 12234455666667889999988865543
No 104
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00037 Score=77.37 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=29.4
Q ss_pred cCcccceeeecccccCcCCCCC-CC-CCCCccEEEEccCchhHHhh
Q 039852 668 IMPRLSSFEIKWCPKLKALPDY-IH-QTTTLKELRILMCGLLKERY 711 (731)
Q Consensus 668 ~~p~L~~L~i~~c~~L~~lp~~-~~-~l~~L~~L~l~~c~~L~~~~ 711 (731)
.+++|+.|.+..|...+.--.. .. .+.++..+++.+|+.+....
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 3445899999998866543211 11 16778889999999776544
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.50 E-value=0.0078 Score=69.81 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+++++++++.|.... ..=+-++|.+|+|||++|+.+.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999886443 223458999999999999999884
No 106
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.05 Score=57.57 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 478999999999888887432 2457789999999999999999874
No 107
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.48 E-value=0.0049 Score=54.62 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=19.3
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|-|+|..|.||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999995
No 108
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.47 E-value=0.0018 Score=56.50 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
||.|+|+.|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 109
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.47 E-value=0.014 Score=56.64 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=55.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHc----cC-----CCCChhhHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEAL----TG-----STSNLDALQSLL 274 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~----~~-----~~~~~~~~~~~~ 274 (731)
.-+++-|+|.+|+|||++|.++..+ .......++|++... +++..+.+. +... .. ...+..+.....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 5689999999999999999988774 333456789999876 776665443 2221 00 011223333345
Q ss_pred HHHHHHhCC-CceEEEehhhH
Q 039852 275 ISIDESIAG-KRFLLVLDDVM 294 (731)
Q Consensus 275 ~~l~~~l~~-kr~llvlDdvw 294 (731)
..+.+.+.. +--+||+|-+-
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 555555543 44588999885
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.46 E-value=0.008 Score=63.73 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...++.|+++.++++.+.+...-.. +-...+-+.++|.+|+|||++|+++++.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999998876421110 0123456889999999999999999984
No 111
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.45 E-value=0.021 Score=56.00 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=54.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHH--------ccC-CCCChhhHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEA--------LTG-STSNLDALQSLL 274 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~--------~~~-~~~~~~~~~~~~ 274 (731)
.-.++-|+|.+|+|||++|.++..+. ...-..++|++.. .++...+. +++.. +.. ...+..+.....
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 56799999999999999999988743 2334678899887 66665543 22221 110 011222333334
Q ss_pred HHHHHHhCCCceEEEehhhH
Q 039852 275 ISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 275 ~~l~~~l~~kr~llvlDdvw 294 (731)
..+.+.+..+--++|+|.+-
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHhcccEEEEeCcH
Confidence 44444444566689999985
No 112
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0086 Score=56.24 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=28.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEE
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWA 241 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 241 (731)
+..+|.++|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999998 454455555544
No 113
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.40 E-value=0.0017 Score=37.15 Aligned_cols=22 Identities=32% Similarity=0.760 Sum_probs=15.3
Q ss_pred cccEEeecCCccccccccccCC
Q 039852 410 HLRYLNLSGQDIVQLSETLCEL 431 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L 431 (731)
+|++|+|++|.++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4777888888777777766543
No 114
>PLN03025 replication factor C subunit; Provisional
Probab=96.39 E-value=0.048 Score=56.66 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=35.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.++.++.+.+++..+ +.+-+-++|..|+||||+|+.+.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889888888887776532 2334668999999999999999884
No 115
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.035 Score=61.52 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999987433 246888999999999999998876
No 116
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.0023 Score=70.01 Aligned_cols=47 Identities=30% Similarity=0.345 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
++++|.+..++.+..++..+. -...+-++|..|+||||+|+.+++..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468998888888888887432 24567899999999999999998743
No 117
>PRK08116 hypothetical protein; Validated
Probab=96.29 E-value=0.015 Score=58.38 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=43.6
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCCc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 285 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr 285 (731)
.-+.++|..|+|||.||.++++. +..+-..+++++ ..+++..+........ .... ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCCC
Confidence 35889999999999999999995 333333455554 3445555554433211 1111 12233344434
Q ss_pred eEEEehhh
Q 039852 286 FLLVLDDV 293 (731)
Q Consensus 286 ~llvlDdv 293 (731)
+|||||+
T Consensus 181 -lLviDDl 187 (268)
T PRK08116 181 -LLILDDL 187 (268)
T ss_pred -EEEEecc
Confidence 7899997
No 118
>PRK08727 hypothetical protein; Validated
Probab=96.28 E-value=0.015 Score=57.22 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
..+.|+|..|+|||+|++++++. ........+|+++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 46999999999999999999984 3333345566654
No 119
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.27 E-value=0.0078 Score=67.25 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=41.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++++|.++.++++..++.....+ ....+++.|+|..|.||||+++.+.+.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999998754321 223468999999999999999999984
No 120
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.016 Score=63.84 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=37.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..++.+...+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998886432 245677899999999999999886
No 121
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.24 E-value=0.15 Score=57.52 Aligned_cols=99 Identities=30% Similarity=0.394 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC-CCHHHHHHHHHHHccCCCC
Q 039852 187 RNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET-FDEFRIAKAMLEALTGSTS 265 (731)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~~~~~~~ 265 (731)
+.++++.|... .+.|++-|..++|-|||||+-.... .. ..=..+.|.+.+.. .++..+...++..+....+
T Consensus 24 R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 45666667643 3689999999999999999988765 11 11246899998764 5778888888887764322
Q ss_pred Ch-------------hhHHHHHHHHHHHhC--CCceEEEehhh
Q 039852 266 NL-------------DALQSLLISIDESIA--GKRFLLVLDDV 293 (731)
Q Consensus 266 ~~-------------~~~~~~~~~l~~~l~--~kr~llvlDdv 293 (731)
+. .+...+...+...+. .+...+||||-
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDy 138 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDY 138 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 21 222333444444343 45789999996
No 122
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.22 E-value=0.018 Score=58.48 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVE 230 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~ 230 (731)
+.++|.|+|.+|+||||++..+.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998887433
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.21 E-value=0.0054 Score=71.78 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+.++.++++.|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH
Confidence 478999999999999887543 234459999999999999999884
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.21 E-value=0.017 Score=60.07 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.++..+.+..++..+. -..++-++|..|+||||+|+.+++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 4578999999999999987432 3568888999999999999999884
No 125
>PRK06696 uridine kinase; Validated
Probab=96.20 E-value=0.012 Score=57.55 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 183 RVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
|.+-+++|.+.+..... ....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55667777777765432 36789999999999999999999883
No 126
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.20 E-value=0.013 Score=56.62 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=36.9
Q ss_pred cCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 175 IDEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 175 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.-++++|.+.+++.+++=-..--. +....-+-+||..|.|||++++++.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 3456799999999888763321111 123345567999999999999999984
No 127
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.012 Score=55.79 Aligned_cols=24 Identities=46% Similarity=0.541 Sum_probs=22.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+.+|||.|.+|.||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 578999999999999999999998
No 128
>PRK12377 putative replication protein; Provisional
Probab=96.15 E-value=0.015 Score=57.30 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=43.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 284 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 284 (731)
...+.++|..|+|||+||.++.+. .......++++++. ++...+-...... .... .+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~----~~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGE----KFLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHH----HHHHHh-cC
Confidence 457899999999999999999994 33334445666543 4444444332111 0111 122223 34
Q ss_pred ceEEEehhh
Q 039852 285 RFLLVLDDV 293 (731)
Q Consensus 285 r~llvlDdv 293 (731)
--||||||+
T Consensus 164 ~dLLiIDDl 172 (248)
T PRK12377 164 VDLLVLDEI 172 (248)
T ss_pred CCEEEEcCC
Confidence 568999997
No 129
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.14 E-value=0.0088 Score=69.19 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=40.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+.+.+|.++.+++|+++|..........-.++.++|..|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999988742211112445899999999999999999997
No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.14 E-value=0.017 Score=68.00 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=37.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+.++.++++.|.... ..-+-++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997543 223458999999999999998884
No 131
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.018 Score=65.75 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..++.+.+++..+. =...+-++|..|+||||+|+.+.+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999988887432 2456689999999999999999874
No 132
>PTZ00301 uridine kinase; Provisional
Probab=96.11 E-value=0.011 Score=56.70 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.10 E-value=0.02 Score=67.59 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+.++.+++..|.... ..-+-++|.+|+|||++|+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999986432 223447999999999999998874
No 134
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.06 E-value=0.049 Score=53.11 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=50.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHc----cCC-----CCChhhHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEAL----TGS-----TSNLDALQSLL 274 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~----~~~-----~~~~~~~~~~~ 274 (731)
.-.++-|.|.+|+||||+|.++.... ...-..++|++....++ +-.++++... ... ..+..+.....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 56899999999999999999988743 22234577887766654 2223333221 110 11112222233
Q ss_pred HHHHHHhCCCceEEEehhhH
Q 039852 275 ISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 275 ~~l~~~l~~kr~llvlDdvw 294 (731)
..+...+..+--++|+|-+-
T Consensus 94 ~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 94 QETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHhcCCcEEEEechH
Confidence 34444454445688899884
No 135
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.028 Score=58.21 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=48.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch----hhhcccceEEEEEe-CCCCCHHH
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV----EVKREFHKILWACV-SETFDEFR 251 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~ 251 (731)
.+++|.+..++.+..++..+. -....-++|+.|+||||+|+.+++.- ....|.|...|... .......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 468898888999999986433 34678899999999999999988731 22456676666552 33344444
No 136
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.11 Score=57.10 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999997433 244678999999999999998886
No 137
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.02 E-value=0.055 Score=52.63 Aligned_cols=97 Identities=15% Similarity=0.261 Sum_probs=53.0
Q ss_pred ccccc-hhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHH
Q 039852 179 EICGR-VGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAML 257 (731)
Q Consensus 179 ~~vGr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 257 (731)
-++|. .+..-...+.+....+ .....+-|+|..|+|||.|.+++++...-...=..++++ +..++...+.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~ 80 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFA 80 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHH
Confidence 34564 3334445555544432 245567899999999999999999943322111234454 4455555555
Q ss_pred HHccCCCCChhhHHHHHHHHHHHhCCCceEEEehhhH
Q 039852 258 EALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~llvlDdvw 294 (731)
..+.... ...+.+.+++- =++++||+.
T Consensus 81 ~~~~~~~---------~~~~~~~~~~~-DlL~iDDi~ 107 (219)
T PF00308_consen 81 DALRDGE---------IEEFKDRLRSA-DLLIIDDIQ 107 (219)
T ss_dssp HHHHTTS---------HHHHHHHHCTS-SEEEEETGG
T ss_pred HHHHccc---------chhhhhhhhcC-CEEEEecch
Confidence 5543311 12344445533 356678873
No 138
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.01 E-value=0.027 Score=53.58 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=36.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeC-CCCCHHHHHHHHHHHccCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVS-ETFDEFRIAKAMLEALTGS 263 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~~~~~ 263 (731)
+||.+||..|+||||.+-+++.....+ -..+..++.. ......+-++..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 699999999999999887777743333 3345556543 2334456677777777643
No 139
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.00 E-value=0.014 Score=62.28 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=38.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+++.|+++.++++.+.+...-.. +-...+-|-++|.+|.|||++|+++++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 3457899999999988876321100 0123566889999999999999999984
No 140
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.98 E-value=0.024 Score=54.18 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=42.0
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccc---eEEEEEeCCCCCHHHHHHHHHHHc----cCCCCChhhHHHHHHHHHH
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFH---KILWACVSETFDEFRIAKAMLEAL----TGSTSNLDALQSLLISIDE 279 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~i~~~i~~~~----~~~~~~~~~~~~~~~~l~~ 279 (731)
||+|.|.+|+||||+|+.+...-.. .... ................... -... .-..+...+.+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999883221 1222 1232333332222222222 1111 1122345566777777776
Q ss_pred HhCCCc
Q 039852 280 SIAGKR 285 (731)
Q Consensus 280 ~l~~kr 285 (731)
..+++.
T Consensus 79 L~~g~~ 84 (194)
T PF00485_consen 79 LKNGGS 84 (194)
T ss_dssp HHTTSC
T ss_pred HhCCCc
Confidence 655554
No 141
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.97 E-value=0.0049 Score=66.63 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=40.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+++|.++.++++++.|..........-+++.++|+.|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 6899999999999999443222234567999999999999999999998
No 142
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.92 E-value=0.042 Score=53.97 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=53.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhccc------ceEEEEEeCCCCCHHHHHHHHHHHccCCC---------CChh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREF------HKILWACVSETFDEFRIAKAMLEALTGST---------SNLD 268 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~~~~~~~---------~~~~ 268 (731)
.-.++.|+|.+|.|||++|..+.-... ..- ..++|+.....++...+.+ +........ ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCC
Confidence 567999999999999999998876322 222 4578999888888765543 222221110 0112
Q ss_pred hHHHHHHHHHHHhC----CCceEEEehhhH
Q 039852 269 ALQSLLISIDESIA----GKRFLLVLDDVM 294 (731)
Q Consensus 269 ~~~~~~~~l~~~l~----~kr~llvlDdvw 294 (731)
+.+++...+.+... .+--++|+|.+-
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33444444444332 344589999985
No 143
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.91 E-value=0.02 Score=56.33 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+.+.|+|..|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999984
No 144
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.91 E-value=0.15 Score=45.62 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHHHHHhhHHHHH
Q 039852 2 VDAIVSTILEQLISLAAKEITQHVMLVTGVEKEVKSLTSHLQAIQAVLNDAEEKQV-KDKAVRRWLGRLNYASYDIEDVL 80 (731)
Q Consensus 2 a~~~v~~~~~kl~~~~~~~l~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~Wl~~lr~~ayd~eD~l 80 (731)
|+.+.++++|...+-+...+.+........+.-.+.|..++++|.-++++.+.-.. -+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44455555555555444478888888888888999999999999999999988532 23333677888999999999999
Q ss_pred HHHH
Q 039852 81 DEWI 84 (731)
Q Consensus 81 D~~~ 84 (731)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 9874
No 145
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.89 E-value=0.05 Score=53.81 Aligned_cols=91 Identities=24% Similarity=0.253 Sum_probs=57.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcc----cceEEEEEeCCCCCHHHHHHHHHHHccCC------------CCCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKRE----FHKILWACVSETFDEFRIAKAMLEALTGS------------TSNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~~~~~------------~~~~ 267 (731)
.-.++.|+|.+|.|||++|.+++-....... -..++|++....++...+.. +++..... ..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 5679999999999999999998753222221 35789999888887765543 22322211 1122
Q ss_pred hhHHHHHHHHHHHhC-C-CceEEEehhhHH
Q 039852 268 DALQSLLISIDESIA-G-KRFLLVLDDVML 295 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~-~-kr~llvlDdvw~ 295 (731)
.+.......+.+.+. . +--+||+|-+-.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 333334444555553 3 566899999963
No 146
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.0074 Score=58.65 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=39.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
.+++|.++-++++.-++..... .++.+-=|-++|++|+||||||..+.+.-
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 4799988888877666653322 13467788999999999999999999943
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.19 Score=57.01 Aligned_cols=105 Identities=16% Similarity=0.296 Sum_probs=65.7
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHcchhhhccc---ceEEEEEeCCCCCHHH
Q 039852 178 EEICGRVGERNELLSKMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREF---HKILWACVSETFDEFR 251 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 251 (731)
..++|.++.++.+.+.+..... +.+..+.+.-.+|+.|||||-||+++.. .-| +..+- +|+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR------~DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIR------IDMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCcccee------echHH
Confidence 3588999999988888765332 2245678888899999999999988877 234 22222 34444
Q ss_pred HHH-HHHHHccCCCCChhhHHHHHHHHHHHhCCCce-EEEehhhH
Q 039852 252 IAK-AMLEALTGSTSNLDALQSLLISIDESIAGKRF-LLVLDDVM 294 (731)
Q Consensus 252 i~~-~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-llvlDdvw 294 (731)
... .-+..+.+..+..-.-++ -..+-+.++.+.| .|+||+|-
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIE 603 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIE 603 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhh
Confidence 333 234445554443322222 3346667778878 56678764
No 148
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.84 E-value=0.16 Score=56.36 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999886432 2467889999999999999998763
No 149
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.036 Score=60.30 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+++||.+..+..+...+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 479998888777777776332 2356789999999999999999773
No 150
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.82 E-value=0.044 Score=57.09 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+++.++.+..++... ..+.+-++|..|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988642 3445799999999999999999884
No 151
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.78 E-value=0.047 Score=53.71 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=42.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 284 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 284 (731)
...+-++|.+|+|||+||.++.+... ..-..+++++ ..++...+-...... ....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~~---~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSNS---ETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhhc---cccHH----HHHHHhc-c
Confidence 45788999999999999999999532 2223455553 344444444332110 11111 2223344 3
Q ss_pred ceEEEehhh
Q 039852 285 RFLLVLDDV 293 (731)
Q Consensus 285 r~llvlDdv 293 (731)
-=+||+||+
T Consensus 163 ~dlLvIDDi 171 (244)
T PRK07952 163 VDLLVIDEI 171 (244)
T ss_pred CCEEEEeCC
Confidence 447888997
No 152
>PRK08233 hypothetical protein; Provisional
Probab=95.76 E-value=0.028 Score=53.00 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.76 E-value=0.05 Score=59.26 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESS-------DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.++.|.+..++++.+.+...-- .+-...+-|-++|++|.|||++|+++++.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 34688899998888877542100 00123456889999999999999999994
No 154
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.76 E-value=0.028 Score=64.65 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||++++.++++.|..... .-+-++|..|+|||++|+.++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999998875321 22347999999999999999874
No 155
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.74 E-value=0.034 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 156
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.13 Score=55.22 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..+..+..++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999988888888887432 1346789999999999999999873
No 157
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.70 E-value=0.075 Score=54.53 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=56.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhh----cccceEEEEEeCCCCCHHHHHHHHHHHccCCCC------------Ch
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVK----REFHKILWACVSETFDEFRIAKAMLEALTGSTS------------NL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~------------~~ 267 (731)
.-+++-|+|..|+|||+|+..++-..... ..=..++|++....|+++.+.+ +++.++.... ..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 56799999999999999998766432221 1124689999999999888754 4555543211 11
Q ss_pred hhHHHHHHHHHHHhC-CCceEEEehhhH
Q 039852 268 DALQSLLISIDESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~-~kr~llvlDdvw 294 (731)
.........+...+. ++--+||+|-+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 122223333433443 344579999985
No 158
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.041 Score=57.92 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+++.++|.+|+||||++..+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998874
No 159
>PRK07667 uridine kinase; Provisional
Probab=95.66 E-value=0.023 Score=54.10 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 187 RNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+.+.+.+..... +..+|+|-|.+|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~----~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKE----NRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCC----CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3556666654432 4589999999999999999999883
No 160
>PRK05439 pantothenate kinase; Provisional
Probab=95.65 E-value=0.066 Score=54.47 Aligned_cols=79 Identities=22% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcc--cceEEEEEeCCCCCHHHHHHHHHHHcc--CCCCChhhHHHHHHHHH
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKRE--FHKILWACVSETFDEFRIAKAMLEALT--GSTSNLDALQSLLISID 278 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~~~~--~~~~~~~~~~~~~~~l~ 278 (731)
...-+|+|.|..|+||||+|+.+.. ..... -..+.-++..+-+-..+.+.. ..+. ...++.-+.+.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHH
Confidence 4678999999999999999998877 33221 122333444443333222221 1111 12244556666666666
Q ss_pred HHhCCCc
Q 039852 279 ESIAGKR 285 (731)
Q Consensus 279 ~~l~~kr 285 (731)
....|+.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666654
No 161
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.65 E-value=0.029 Score=54.99 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHhhHHHHHHHH
Q 039852 5 IVSTILEQLISLAAKEITQHVMLVTGVEKEVKSLTSHLQAIQAVLNDAEEK-QVKDKAVRRWLGRLNYASYDIEDVLDEW 83 (731)
Q Consensus 5 ~v~~~~~kl~~~~~~~l~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~Wl~~lr~~ayd~eD~lD~~ 83 (731)
.|..++++|-. +...-...+.-++.+++-++.+++++|.||+...+. +...........++-+.||++|.++|.+
T Consensus 297 yVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 45566666666 444445566778999999999999999999998554 4444458999999999999999999987
Q ss_pred H
Q 039852 84 I 84 (731)
Q Consensus 84 ~ 84 (731)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 4
No 162
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.057 Score=58.39 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++|+|+|.+|+||||++.++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 163
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.095 Score=58.66 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=36.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+++||-+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478998888888888887432 246778999999999999998854
No 164
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.24 Score=53.92 Aligned_cols=46 Identities=26% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.++||.+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHH
Confidence 3478998888888877776432 234788999999999999998875
No 165
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.043 Score=61.39 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHH
Confidence 479999999999999987432 245788999999999999998876
No 166
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.57 E-value=0.06 Score=54.35 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=41.9
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhccc--ceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHH
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREF--HKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES 280 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 280 (731)
+...+|+|.|..|+||||+|+.+.. ...... ..+..++...-....+.....----....++.-+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4578999999999999999987755 222111 123334444333222222221000001223455566666666665
Q ss_pred hCCC
Q 039852 281 IAGK 284 (731)
Q Consensus 281 l~~k 284 (731)
..|+
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 167
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.56 E-value=0.046 Score=55.93 Aligned_cols=92 Identities=15% Similarity=0.262 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHcc
Q 039852 182 GRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALT 261 (731)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~ 261 (731)
++........+++..-.. +...+-+-++|..|+|||.||.++++... +..+ .+.+++++ ++..++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 444555556666653322 12346789999999999999999999533 2223 34555543 45555544432
Q ss_pred CCCCChhhHHHHHHHHHHHhCCCceEEEehhh
Q 039852 262 GSTSNLDALQSLLISIDESIAGKRFLLVLDDV 293 (731)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~l~~kr~llvlDdv 293 (731)
.. +... .+ +.+. +-=+|||||+
T Consensus 205 ~~-----~~~~---~l-~~l~-~~dlLiIDDi 226 (306)
T PRK08939 205 DG-----SVKE---KI-DAVK-EAPVLMLDDI 226 (306)
T ss_pred cC-----cHHH---HH-HHhc-CCCEEEEecC
Confidence 11 1111 12 2233 4557889997
No 168
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.55 E-value=0.07 Score=53.22 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=59.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhc----ccceEEEEEeCCCCCHHHHHHHHHHHccCCC------------CCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKR----EFHKILWACVSETFDEFRIAKAMLEALTGST------------SNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------~~~ 267 (731)
.-.|.=|+|.+|+|||.|+..++-+..+.. .=..++|++-...|+.+.+. +|++....+. .+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 456999999999999999988775433322 22359999999999988765 4555443221 122
Q ss_pred hhHHHHHHHHHHHhC-CCceEEEehhhHHHHHHHH
Q 039852 268 DALQSLLISIDESIA-GKRFLLVLDDVMLVLFKRL 301 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~-~kr~llvlDdvw~~lf~~~ 301 (731)
.+.......+...+. .+--|||+|.+- .+|...
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa-alfr~e 149 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA-ALFRSE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS-HHHHHH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH-HHHHHH
Confidence 333334444444443 455589999986 455543
No 169
>PRK05642 DNA replication initiation factor; Validated
Probab=95.50 E-value=0.073 Score=52.39 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=27.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVS 244 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs 244 (731)
...+.|+|..|+|||.|++++++. ....-..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHH
Confidence 367899999999999999999884 22222346666543
No 170
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.50 E-value=0.33 Score=54.81 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999887432 244666999999999999987776
No 171
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.50 E-value=0.075 Score=48.85 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=29.8
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD 248 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (731)
++.|+|..|.||||+++.+.... ...-..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 46799999999999999998843 33335677777766554
No 172
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.045 Score=61.37 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.++||.+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999998888886432 2355789999999999999998773
No 173
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.46 E-value=0.036 Score=60.04 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=44.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcc-cc-eEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKRE-FH-KILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
..-+-|+|..|+|||+|++++++. +... .. .++|++. .++..++...+... .. ..+.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHH
Confidence 345999999999999999999994 3332 22 3555543 44555555554321 11 12333333
Q ss_pred CCceEEEehhhH
Q 039852 283 GKRFLLVLDDVM 294 (731)
Q Consensus 283 ~kr~llvlDdvw 294 (731)
.+.-+|++||+.
T Consensus 193 ~~~dvLlIDDi~ 204 (440)
T PRK14088 193 KKVDVLLIDDVQ 204 (440)
T ss_pred hcCCEEEEechh
Confidence 344578889985
No 174
>PRK06921 hypothetical protein; Provisional
Probab=95.42 E-value=0.057 Score=54.15 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=27.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcc-cceEEEEEe
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKRE-FHKILWACV 243 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~v 243 (731)
..-+.++|..|+|||+||.++.+. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999994 3332 344566654
No 175
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.42 E-value=0.061 Score=57.76 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
-+++.++|.+|+||||++..+.........-..++.|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 469999999999999998887763321122234555554
No 176
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.41 E-value=0.0083 Score=57.72 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=44.9
Q ss_pred chhhhhccccccEEeecCCccccccccccCCCceeEEeccCC--cCcccCcccccCCCCcceeeccCC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYC--MDLEELPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c--~~l~~lp~~i~~L~~L~~L~l~~~ 466 (731)
+..-...+..|++|++.+..++.+- .+-.|.+|+.|.++.| .....++.-..++++|++|++++|
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3334445566777777776655442 3346789999999987 444566666677799999999998
No 177
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.41 E-value=0.06 Score=52.93 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.5
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+..+|+|.|..|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999873
No 178
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.058 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++|+++|.+|+||||++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4589999999999999999999873
No 179
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.056 Score=56.44 Aligned_cols=87 Identities=13% Similarity=0.236 Sum_probs=47.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC--CHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF--DEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 281 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l 281 (731)
+-.++.++|..|+||||++.++......+.....+..++ .+.+ ...+-++...+.++.......+...+...+ ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHh
Confidence 346999999999999999999988432222223444444 3333 344455555555554332222222222233 334
Q ss_pred CCCceEEEehhh
Q 039852 282 AGKRFLLVLDDV 293 (731)
Q Consensus 282 ~~kr~llvlDdv 293 (731)
.++.+ |++|..
T Consensus 214 ~~~Dl-VLIDTa 224 (374)
T PRK14722 214 RNKHM-VLIDTI 224 (374)
T ss_pred cCCCE-EEEcCC
Confidence 55544 557764
No 180
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.38 E-value=0.12 Score=53.72 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=58.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhh----cccceEEEEEeCCCCCHHHHHHHHHHHccCCCC------------Ch
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVK----REFHKILWACVSETFDEFRIAKAMLEALTGSTS------------NL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~------------~~ 267 (731)
.-.++-|+|.+|+|||+++..++-..... ..-..++|++....|+++++. ++++.++.... ..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 56789999999999999998877533221 111369999999999988764 45555543211 11
Q ss_pred hhHHHHHHHHHHHhC-CCceEEEehhhHHHHHHH
Q 039852 268 DALQSLLISIDESIA-GKRFLLVLDDVMLVLFKR 300 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~-~kr~llvlDdvw~~lf~~ 300 (731)
.....+...+...+. .+--|||+|-+- .+|..
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~-alfr~ 233 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT-ALYRT 233 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH-HHHHH
Confidence 222222333323333 455589999986 34443
No 181
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.066 Score=59.35 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..++.+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999888887432 235677899999999999999876
No 182
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.34 E-value=0.12 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+|.++|..|+||||.|..+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998888774
No 183
>PRK10867 signal recognition particle protein; Provisional
Probab=95.34 E-value=0.094 Score=56.12 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...||.++|..|+||||.|..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877776
No 184
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.31 E-value=0.087 Score=56.81 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=42.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhccc--ceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREF--HKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
...+.|+|..|+|||+|++++++.. .... ..+++++ ..++..++...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVS------SEKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 4568899999999999999999943 3322 2345553 334444454444321 111 2233333
Q ss_pred CCceEEEehhhH
Q 039852 283 GKRFLLVLDDVM 294 (731)
Q Consensus 283 ~kr~llvlDdvw 294 (731)
+ .-+|++||+.
T Consensus 199 ~-~dlLiiDDi~ 209 (405)
T TIGR00362 199 S-VDLLLIDDIQ 209 (405)
T ss_pred h-CCEEEEehhh
Confidence 3 2378889995
No 185
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.31 E-value=0.03 Score=59.99 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESS-------DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++.|.+..++++.+.+...-. -+-...+-|.++|..|.|||++|+++++.
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999888888776632100 00123456779999999999999999993
No 186
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.31 E-value=0.067 Score=52.73 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=28.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
...+.|+|+.|+|||+|++.+++. ....-..+.++++..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHH
Confidence 357899999999999999999984 322233455666543
No 187
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.31 E-value=0.014 Score=56.61 Aligned_cols=25 Identities=40% Similarity=0.424 Sum_probs=23.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+..+|+|+|..|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999984
No 188
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.29 E-value=1 Score=53.30 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++|.+..++.+.+.+..... +.+....++-++|+.|+|||+||+.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999887763221 1133456677899999999999999887
No 189
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.27 E-value=0.1 Score=51.67 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=55.4
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhh--hcccceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhhH-----
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEV--KREFHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDAL----- 270 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~~----- 270 (731)
..++|+|-.|+|||+|+..+.++..+ +.+-+.++++-+.+... ..++..++...-... ..+....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999998885432 22346788888887764 456666665432111 0111111
Q ss_pred HHHHHHHHHHh---CCCceEEEehhhH
Q 039852 271 QSLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
......+-+++ .++++|+++||+-
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 11122344444 3789999999984
No 190
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.24 E-value=0.058 Score=55.16 Aligned_cols=85 Identities=24% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCC-----CChhhHHHHHHHH
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGST-----SNLDALQSLLISI 277 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~-----~~~~~~~~~~~~l 277 (731)
+.-+++-|+|..|+||||||.++.... ...-..++|++..+.++.. .+.+++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 356899999999999999998877643 2333567888887777654 233333221 1112344445555
Q ss_pred HHHhC-CCceEEEehhhH
Q 039852 278 DESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 278 ~~~l~-~kr~llvlDdvw 294 (731)
...++ +.--+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 456689999985
No 191
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.22 E-value=0.14 Score=52.64 Aligned_cols=95 Identities=23% Similarity=0.233 Sum_probs=57.1
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhc----ccceEEEEEeCCCCCHHHHHHHHHHHccCCCC------------C
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKR----EFHKILWACVSETFDEFRIAKAMLEALTGSTS------------N 266 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~------------~ 266 (731)
+.-.++-|+|..|.|||||+..++-...... .-..++|++....|+...+ .++++.++.... +
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 3578999999999999999998875322211 1236799998888888764 334444432211 1
Q ss_pred hhhHHHHHHHHHHHhC-CCceEEEehhhHHHHHH
Q 039852 267 LDALQSLLISIDESIA-GKRFLLVLDDVMLVLFK 299 (731)
Q Consensus 267 ~~~~~~~~~~l~~~l~-~kr~llvlDdvw~~lf~ 299 (731)
..........+...+. .+--|||+|-+- .+|.
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~-al~r 205 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSAT-ALYR 205 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcH-HHhh
Confidence 1222222333333343 345589999986 3444
No 192
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.021 Score=50.71 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.--|.|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 446899999999999999999984
No 193
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.16 E-value=0.066 Score=54.77 Aligned_cols=84 Identities=26% Similarity=0.219 Sum_probs=54.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCC-----CChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGST-----SNLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~-----~~~~~~~~~~~~l~ 278 (731)
.-+++-|+|.+|+||||||.+++-.. ...-..++|++..+.+++. .+.+++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 56789999999999999999877632 2334568899888877764 233333210 11223444455555
Q ss_pred HHhC-CCceEEEehhhH
Q 039852 279 ESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~-~kr~llvlDdvw 294 (731)
..++ +.--+||+|-|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 5444 455689999985
No 194
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.16 E-value=0.013 Score=51.63 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.5
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999885
No 195
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.16 E-value=0.16 Score=52.67 Aligned_cols=90 Identities=22% Similarity=0.224 Sum_probs=56.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhh----cccceEEEEEeCCCCCHHHHHHHHHHHccCCCC---------ChhhH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVK----REFHKILWACVSETFDEFRIAKAMLEALTGSTS---------NLDAL 270 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~---------~~~~~ 270 (731)
.-.++=|+|..|+|||+|+..++-..... ..-...+|++....|+++++.+ +++.++.+.. ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 56788899999999999998876432321 1124689999999999888655 4555443211 11122
Q ss_pred HH---HHHHHHHHhC-CCceEEEehhhH
Q 039852 271 QS---LLISIDESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~---~~~~l~~~l~-~kr~llvlDdvw 294 (731)
++ ....+...+. .+--|||+|-+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 22 2233333333 334478999985
No 196
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.36 Score=53.72 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999987443 245678899999999999998876
No 197
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.13 E-value=0.13 Score=51.82 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=27.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
+.++|.++|.+|+||||.+..+... ....-..+++++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeC
Confidence 5789999999999999998888763 3332234444543
No 198
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.085 Score=57.76 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..+..+...+..+. -..-+-++|..|+||||+|+.+++.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 478998888888887776432 2357789999999999999999873
No 199
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.0016 Score=62.66 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=60.3
Q ss_pred ccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCcccccccc--ccCCCCCCCc
Q 039852 407 KLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVV--GIGRLTGLRT 484 (731)
Q Consensus 407 ~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~ 484 (731)
.|.+.+.|++.||+++.+ +-+.++..|++|.|+- +++..+. .+..|++|+.|+|..| .+..+-+ -+.+|++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeec-cccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 366778889999998877 2345788999999998 6677774 3778999999999887 3333322 2567888888
Q ss_pred cCceEeCCC
Q 039852 485 LGEFHVSGG 493 (731)
Q Consensus 485 L~~~~~~~~ 493 (731)
|++..+..+
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 888766544
No 200
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.10 E-value=0.13 Score=56.27 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=42.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhccc--ceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREF--HKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 281 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l 281 (731)
...-+.|+|..|+|||+|++++.+. +...+ ..+++++. .++..++...+... .. ..+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~----~~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TM----EEFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cH----HHHHHHH
Confidence 3456899999999999999999994 43333 22445433 23333444433221 11 2233334
Q ss_pred CCCceEEEehhhH
Q 039852 282 AGKRFLLVLDDVM 294 (731)
Q Consensus 282 ~~kr~llvlDdvw 294 (731)
+. --+||+||+.
T Consensus 210 ~~-~dlLiiDDi~ 221 (450)
T PRK00149 210 RS-VDVLLIDDIQ 221 (450)
T ss_pred hc-CCEEEEehhh
Confidence 32 3478889995
No 201
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.09 E-value=0.19 Score=52.11 Aligned_cols=90 Identities=26% Similarity=0.248 Sum_probs=56.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcc----cceEEEEEeCCCCCHHHHHHHHHHHccCCC------------CCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKRE----FHKILWACVSETFDEFRIAKAMLEALTGST------------SNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------~~~ 267 (731)
.-.++-|+|.+|+|||+++.++.-....... =..++|++....|++..+.+. ++.++... ...
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCCChHhhhccEEEEeCCCH
Confidence 5679999999999999999888754322111 147999999999988776543 34333211 111
Q ss_pred hhHHHHHHHHHHHhCC-Cc-eEEEehhhH
Q 039852 268 DALQSLLISIDESIAG-KR-FLLVLDDVM 294 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~~-kr-~llvlDdvw 294 (731)
.........+...+.. .+ -+||+|-+-
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 2222334455555543 33 489999985
No 202
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.09 E-value=0.017 Score=55.85 Aligned_cols=25 Identities=40% Similarity=0.368 Sum_probs=22.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|+|+|..|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 203
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.06 E-value=0.075 Score=49.76 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|.|+|..|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999984
No 204
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.05 E-value=0.066 Score=57.92 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=42.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 284 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 284 (731)
..-+.|+|..|+|||+|++++.+. +......+++++ ...+...+...+... . ...+++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~~- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYRN- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHccc-
Confidence 456789999999999999999994 332223344443 334444555444321 1 1223343433
Q ss_pred ceEEEehhh
Q 039852 285 RFLLVLDDV 293 (731)
Q Consensus 285 r~llvlDdv 293 (731)
.-++++||+
T Consensus 203 ~dvLiIDDi 211 (445)
T PRK12422 203 VDALFIEDI 211 (445)
T ss_pred CCEEEEcch
Confidence 447788997
No 205
>PRK09183 transposase/IS protein; Provisional
Probab=95.03 E-value=0.13 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+.|+|..|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999774
No 206
>CHL00181 cbbX CbbX; Provisional
Probab=94.98 E-value=0.15 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.438 Sum_probs=19.6
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+-++|.+|+||||+|+.+++.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999874
No 207
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.97 E-value=0.025 Score=59.51 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++++|++..++.+..++..+ ..+.+-++|..|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999998888632 3345779999999999999998873
No 208
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.95 E-value=0.037 Score=51.92 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.95 E-value=0.084 Score=54.81 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=40.7
Q ss_pred CcEEEeeeccCcchHHH-HHHHHHcchhhhcccceEEEEEeCC-CCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHh
Q 039852 204 GLHIISIVGMGGIGKTT-LAQLASNHVEVKREFHKILWACVSE-TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 281 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTt-La~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l 281 (731)
+-+||.+||+.|||||| ||+..+.-.. ...=..++.++... .....+-++...+-++.+-....+..++...+. .+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~-~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE-AL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH-Hh
Confidence 47899999999999986 6665554211 12223344454422 222334344444444444333333333333332 23
Q ss_pred CCCceE
Q 039852 282 AGKRFL 287 (731)
Q Consensus 282 ~~kr~l 287 (731)
+++++.
T Consensus 280 ~~~d~I 285 (407)
T COG1419 280 RDCDVI 285 (407)
T ss_pred hcCCEE
Confidence 444443
No 210
>PRK06526 transposase; Provisional
Probab=94.95 E-value=0.051 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.-+.++|.+|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345899999999999999999874
No 211
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.93 E-value=0.093 Score=56.34 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=56.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhh-----HH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDA-----LQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~-----~~ 271 (731)
=..++|+|..|+|||||+.++.++... .+-+.++++-+.+... +.++..++...-... ..+... ..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 357899999999999999988875433 3567788887777654 445666665432111 111111 11
Q ss_pred HHHHHHHHHh---CCCceEEEehhhH
Q 039852 272 SLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
.....+-+++ .|+++|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 1223344554 4899999999984
No 212
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.93 E-value=0.1 Score=51.02 Aligned_cols=89 Identities=21% Similarity=0.169 Sum_probs=51.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC-----CCCHHHHHHHHHHHccCCC------C-ChhhHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE-----TFDEFRIAKAMLEALTGST------S-NLDALQ 271 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~~~~~~------~-~~~~~~ 271 (731)
+-.++++||..|.||||+++.+..=.. -.. ..++..-.+ .....+-..+++..++... + +...-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~--pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE--PTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC--CCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346999999999999999999987322 122 222222111 1123344556666665431 1 222222
Q ss_pred HHHHHHHHHhCCCceEEEehhhHH
Q 039852 272 SLLISIDESIAGKRFLLVLDDVML 295 (731)
Q Consensus 272 ~~~~~l~~~l~~kr~llvlDdvw~ 295 (731)
.-.-.+.+.+.-+.-++|.|+--+
T Consensus 115 rQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchh
Confidence 233356677888888899998643
No 213
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.93 E-value=0.16 Score=50.71 Aligned_cols=90 Identities=23% Similarity=0.151 Sum_probs=58.0
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH---HccC-CCCChhhHHHHHHHHH
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE---ALTG-STSNLDALQSLLISID 278 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~---~~~~-~~~~~~~~~~~~~~l~ 278 (731)
+.-+++=|+|..|.||||+|-+++-. .+..-...+|++.-+.+++..+..--.. .+.- ...........+..+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 46789999999999999999888774 3334448899999999998875433222 1111 1222333333444444
Q ss_pred HHhCCCceEEEehhhH
Q 039852 279 ESIAGKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~~kr~llvlDdvw 294 (731)
+....+--|+|+|-|-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 4444445688888774
No 214
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.92 E-value=0.078 Score=62.46 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=38.6
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++|.+..++.+...+..... +.+....++.++|..|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999988888764321 1123356888999999999999999987
No 215
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.91 E-value=0.14 Score=49.53 Aligned_cols=28 Identities=43% Similarity=0.598 Sum_probs=23.7
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchh
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVE 230 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 230 (731)
++...|-++||+|.||||..|.++.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 4566888899999999999999998544
No 216
>PRK09354 recA recombinase A; Provisional
Probab=94.90 E-value=0.085 Score=54.42 Aligned_cols=85 Identities=25% Similarity=0.209 Sum_probs=55.7
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCC-----CChhhHHHHHHHH
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGST-----SNLDALQSLLISI 277 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~-----~~~~~~~~~~~~l 277 (731)
+.-+++-|+|..|+||||||.++..... ..-...+|+..-..+++. .+.+++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3567999999999999999998876432 334578899988888763 334443220 1112344445555
Q ss_pred HHHhC-CCceEEEehhhH
Q 039852 278 DESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 278 ~~~l~-~kr~llvlDdvw 294 (731)
...++ +.--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 455689999985
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.88 E-value=0.066 Score=53.23 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=43.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 283 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 283 (731)
+..=+.++|..|+|||.||.++.++.. +..+. +.++ ...++..++...... ......+.+.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~--------~~~~~~l~~~l~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDE--------GRLEEKLLRELKK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhc--------CchHHHHHHHhhc
Confidence 455688999999999999999999654 43344 3344 344555555544332 1112223332322
Q ss_pred CceEEEehhh
Q 039852 284 KRFLLVLDDV 293 (731)
Q Consensus 284 kr~llvlDdv 293 (731)
-=||||||+
T Consensus 168 -~dlLIiDDl 176 (254)
T COG1484 168 -VDLLIIDDI 176 (254)
T ss_pred -CCEEEEecc
Confidence 336889997
No 218
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.87 E-value=0.19 Score=53.87 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=35.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCH--HHHHHHHHHHccC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDE--FRIAKAMLEALTG 262 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~~~~ 262 (731)
...+|.++|..|+||||.|..++.... +..+ .++.|+. +.+.+ .+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~-D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAA-DTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecC-CCCCHHHHHHHHHHHHHcCC
Confidence 578999999999999999999987433 2223 3333433 33333 4445566666543
No 219
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.86 E-value=0.04 Score=49.20 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=27.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
+||.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999953 234556665666655
No 220
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.85 E-value=0.019 Score=44.21 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998884
No 221
>PRK06547 hypothetical protein; Provisional
Probab=94.84 E-value=0.036 Score=51.49 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=23.3
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
....+|+|.|..|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999874
No 222
>PRK10536 hypothetical protein; Provisional
Probab=94.82 E-value=0.14 Score=50.12 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=40.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEE
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKIL 239 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~ 239 (731)
..+.++......++.++.. ..+|.+.|..|.|||+||.++.-+.-..+.|+.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 4577788888888888862 34999999999999999999887533334455443
No 223
>PTZ00035 Rad51 protein; Provisional
Probab=94.81 E-value=0.25 Score=51.34 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhh----cccceEEEEEeCCCCCHHHHHHHHHHHccCCCC---------ChhhH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVK----REFHKILWACVSETFDEFRIAKAMLEALTGSTS---------NLDAL 270 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~---------~~~~~ 270 (731)
.-.++-|+|..|.|||||+..++-....- ..=..++|++....|+++.+. ++++..+.... ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhCCChHhHhhceEEEccCCH
Confidence 57899999999999999998887533321 112357799988888887743 34444433210 11112
Q ss_pred HHH---HHHHHHHhC-CCceEEEehhhHHHHHH
Q 039852 271 QSL---LISIDESIA-GKRFLLVLDDVMLVLFK 299 (731)
Q Consensus 271 ~~~---~~~l~~~l~-~kr~llvlDdvw~~lf~ 299 (731)
++. ...+...+. ++--+||+|-+- .+|.
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSit-al~r 227 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSAT-ALFR 227 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcH-Hhhh
Confidence 222 222333333 445589999996 3444
No 224
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.80 E-value=0.12 Score=55.02 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCCccccchhHHHHHHHHHhcCC--C-----CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCES--S-----DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~--~-----~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.++.|.+..++++.+.+...- + -+-...+-|-++|..|.|||++|+++++.
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34578998888888777653110 0 01124567889999999999999999984
No 225
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.78 E-value=0.042 Score=52.17 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=28.3
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHH
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEF 250 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (731)
.|+|.|-||+||||+|..+.....-++.|+..+ |....+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLv-VDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLV-VDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEE-EeCCCCCChH
Confidence 689999999999999988555322222255444 5555566543
No 226
>PRK09087 hypothetical protein; Validated
Probab=94.76 E-value=0.03 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998874
No 227
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.74 E-value=0.1 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.9
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
||.|+|..|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998884
No 228
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.15 Score=52.82 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=46.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC-CCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE-TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
+.++|.++|..|+||||++..+..... ... ..+.+|+... .....+-++...+.++.......+...+...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999988886432 222 3455555432 2223444555555544332222333344444443321
Q ss_pred -CCceEEEehh
Q 039852 283 -GKRFLLVLDD 292 (731)
Q Consensus 283 -~kr~llvlDd 292 (731)
+..=+|++|-
T Consensus 283 ~~~~D~VLIDT 293 (407)
T PRK12726 283 VNCVDHILIDT 293 (407)
T ss_pred cCCCCEEEEEC
Confidence 2334455554
No 229
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.68 E-value=0.35 Score=50.93 Aligned_cols=31 Identities=32% Similarity=0.287 Sum_probs=26.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFH 236 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~ 236 (731)
....+-|+|..|+|||.|++++.+ ....+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~ 142 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGP 142 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCC
Confidence 577899999999999999999999 4545544
No 230
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.12 Score=57.58 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..++.+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999987432 245678999999999999998886
No 231
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.0035 Score=57.76 Aligned_cols=66 Identities=15% Similarity=0.328 Sum_probs=48.7
Q ss_pred ccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCC-CCCCCCCCccEEEEccCch
Q 039852 635 IAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP-DYIHQTTTLKELRILMCGL 706 (731)
Q Consensus 635 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~ 706 (731)
..+++++.|.+.+|..+.+|.....+. .+|+|+.|+|++|+.+++-- ..+..+++|+.|.|++.|.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~------~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG------LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc------cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 466778888888888888777654432 57888888888888887743 2355678888888888773
No 232
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.63 E-value=0.079 Score=57.50 Aligned_cols=75 Identities=24% Similarity=0.321 Sum_probs=44.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 284 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 284 (731)
..-+.|+|..|+|||+|++++.+.......-..++++ +..++...+...+.... .....+.+.++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 4568899999999999999999832221111223333 33456666666553210 112234444443
Q ss_pred ceEEEehhh
Q 039852 285 RFLLVLDDV 293 (731)
Q Consensus 285 r~llvlDdv 293 (731)
.-+||+||+
T Consensus 207 ~dvLiIDDi 215 (450)
T PRK14087 207 NDVLIIDDV 215 (450)
T ss_pred CCEEEEecc
Confidence 347888998
No 233
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.63 E-value=0.028 Score=51.90 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=25.2
Q ss_pred ccEEeecCCccccccccccCCCceeEEeccCCcCcccCccccc-CCCCcceeeccCC
Q 039852 411 LRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIK-KLINMRHLLNDGT 466 (731)
Q Consensus 411 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~-~L~~L~~L~l~~~ 466 (731)
.-.+||++|++..++ .+..+..|.+|.+.+ +.+..+-+.+. .+++|..|.+.+|
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecCc
Confidence 334555555544432 333455555555555 33444433333 2344555555554
No 234
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.15 Score=54.32 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.+..++.+.+.+..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999987432 2458889999999999999998773
No 235
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.56 E-value=0.15 Score=53.88 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=47.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhc--ccceEEEEEeCCCCCHH--HHHHHHHHHccCCCCChhhHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKR--EFHKILWACVSETFDEF--RIAKAMLEALTGSTSNLDALQSLLISIDE 279 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~--~i~~~i~~~~~~~~~~~~~~~~~~~~l~~ 279 (731)
..++|.++|..|+||||.+..+........ +-..+..++. +.+... +-++...+.++.+.........+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999988886433221 1123444444 344433 33445555454432222333444444443
Q ss_pred HhCCCceEEEehhh
Q 039852 280 SIAGKRFLLVLDDV 293 (731)
Q Consensus 280 ~l~~kr~llvlDdv 293 (731)
+.+ .-++++|..
T Consensus 252 -~~~-~DlVLIDTa 263 (388)
T PRK12723 252 -SKD-FDLVLVDTI 263 (388)
T ss_pred -hCC-CCEEEEcCC
Confidence 333 456777764
No 236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.47 E-value=0.34 Score=50.12 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=40.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhc----ccceEEEEEeCCCCCHHHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKR----EFHKILWACVSETFDEFRIAKAMLEAL 260 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~ 260 (731)
.-.|+-|+|..|+||||++.+++-+..... .=..++||+....|+...+.+ ++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 567999999999999999998876433210 112799999999898877543 34443
No 237
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.42 E-value=0.11 Score=61.29 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=39.6
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++|.+..++.+...+..... +.+....++.++|..|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999998875321 1123456788999999999999999997
No 238
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.41 E-value=0.0059 Score=52.58 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=60.5
Q ss_pred cchhhhh-ccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc
Q 039852 400 KIPRNIE-KLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 400 ~lp~~i~-~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 475 (731)
.+|+.|. +.+.+..|+|++|.|.++|.++..++.|+.|+++. +.+...|.-|..|.+|-.|+..++ ....+|..
T Consensus 67 ~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 3555554 34588999999999999999999999999999999 668888999988999999998887 44445544
No 239
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.41 E-value=0.13 Score=49.57 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=50.7
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccC-------CCCChhhH-----HH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTG-------STSNLDAL-----QS 272 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~-------~~~~~~~~-----~~ 272 (731)
.-++|+|..|+|||+|++.+.++.. -+..+++.+.+.. .+.++.+++...-.. ...+.... ..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4789999999999999999988542 2344777777664 344555555433110 01111100 11
Q ss_pred HHHHHHHHh--CCCceEEEehhhH
Q 039852 273 LLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 273 ~~~~l~~~l--~~kr~llvlDdvw 294 (731)
..-.+-+++ +++.+|+++||+-
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 111222333 6999999999983
No 240
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.40 E-value=0.16 Score=47.43 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999998873
No 241
>PRK04296 thymidine kinase; Provisional
Probab=94.39 E-value=0.057 Score=51.25 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=44.7
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCC--hhhHHHHHHHHHHHhCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSN--LDALQSLLISIDESIAG 283 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~l~~ 283 (731)
.++-|.|..|.||||+|....... ..+-..++.+ ...++.+.....++.+++..... ..........+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 467789999999999998887743 2222233323 22233333333445555432211 1223334444444 333
Q ss_pred CceEEEehhh
Q 039852 284 KRFLLVLDDV 293 (731)
Q Consensus 284 kr~llvlDdv 293 (731)
+.-+||+|.+
T Consensus 78 ~~dvviIDEa 87 (190)
T PRK04296 78 KIDCVLIDEA 87 (190)
T ss_pred CCCEEEEEcc
Confidence 4458999997
No 242
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.084 Score=49.27 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|.|+|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.37 E-value=0.31 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...||.++|..|+||||+|..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888763
No 244
>PF14516 AAA_35: AAA-like domain
Probab=94.35 E-value=2 Score=44.80 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=66.7
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC-----CCHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET-----FDEF 250 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 250 (731)
+.+..|.|....+++.+.|... -..+.|.|.-.+|||+|...+.+..+-. .+ ..+++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 3445678887777888877632 3489999999999999999998854332 33 3556776542 2455
Q ss_pred HHHH----HHHHHccCCCCCh-------hhHHHHHHHHHHHh---CCCceEEEehhhH
Q 039852 251 RIAK----AMLEALTGSTSNL-------DALQSLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 251 ~i~~----~i~~~~~~~~~~~-------~~~~~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
++++ .+.+++.....-. .........+.+.+ .+++.+|++|++.
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD 137 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEID 137 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechh
Confidence 4444 4444544332111 11122233344432 2689999999984
No 245
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.34 E-value=0.12 Score=60.07 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=43.6
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 178 EEICGRVGERNELLSKMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
..++|.++.++.+.+.+..... +.+....++-++|+.|+|||+||+.++.. . +...+.++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSE 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCch
Confidence 3578988888888888764211 11234567899999999999999999883 2 23345555444
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.16 Score=54.79 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=61.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCC------CCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSD------QQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEF 250 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (731)
-.++-|.+....++.+++..-..+ +-...+=|-++|++|.|||.||+++.++..+ .| ..++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isA----- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISA----- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecc-----
Confidence 456788898888888877653222 1223566789999999999999999995333 22 22222
Q ss_pred HHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCCceEEEehhhH
Q 039852 251 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 251 ~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~llvlDdvw 294 (731)
.+|+..+.+. +.+.+...+.+....-.+++.+||+.
T Consensus 257 ---peivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 257 ---PEIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeeccc
Confidence 2344443332 22333344445556778999999984
No 247
>PRK06762 hypothetical protein; Provisional
Probab=94.27 E-value=0.033 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|.|+|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 248
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.26 E-value=0.023 Score=32.41 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=9.5
Q ss_pred eeEEeccCCcCcccCccccc
Q 039852 434 LEKLDISYCMDLEELPEGIK 453 (731)
Q Consensus 434 L~~L~l~~c~~l~~lp~~i~ 453 (731)
|++||+++| .+..+|.+|+
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 555555554 3445555443
No 249
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.26 E-value=0.11 Score=61.19 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=39.9
Q ss_pred CCccccchhHHHHHHHHHhcCC---CCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 177 EEEICGRVGERNELLSKMLCES---SDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...++|.+..++.+.+.+.... .+.+....++-++|+.|+|||.+|+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999998886421 11134567899999999999999998876
No 250
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.26 E-value=1.3 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+.|+|..|+|||.|++++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999994
No 251
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.26 E-value=0.12 Score=57.06 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=47.2
Q ss_pred CCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHh
Q 039852 202 QKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 281 (731)
Q Consensus 202 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l 281 (731)
.+.-+|.-.+|.+|+||||||..|+++.- | .++=++.|+.=....+-..|...+.. ...+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~---------------~s~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQN---------------HSVL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhh---------------cccc
Confidence 34678999999999999999999988432 2 24446677766655555555443321 1223
Q ss_pred C--CCceEEEehhh
Q 039852 282 A--GKRFLLVLDDV 293 (731)
Q Consensus 282 ~--~kr~llvlDdv 293 (731)
. ++...+|+|++
T Consensus 383 ~adsrP~CLViDEI 396 (877)
T KOG1969|consen 383 DADSRPVCLVIDEI 396 (877)
T ss_pred ccCCCcceEEEecc
Confidence 2 56667888876
No 252
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.19 Score=57.23 Aligned_cols=85 Identities=15% Similarity=0.272 Sum_probs=46.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC--HHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD--EFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
-+||+++|..|+||||.+.++.........-..+..++. +.+. ..+-++...+.++.......+...+...+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 479999999999999999888874322222224444433 3333 334455555555543322223333444443 345
Q ss_pred CCceEEEehh
Q 039852 283 GKRFLLVLDD 292 (731)
Q Consensus 283 ~kr~llvlDd 292 (731)
++. +|++|-
T Consensus 263 ~~D-~VLIDT 271 (767)
T PRK14723 263 DKH-LVLIDT 271 (767)
T ss_pred CCC-EEEEeC
Confidence 554 444453
No 253
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.24 E-value=0.055 Score=54.37 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=32.7
Q ss_pred ccccchhHHHHHH---HHHhcC-----C-CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELL---SKMLCE-----S-SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~---~~L~~~-----~-~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.+..++.+. .+.... . -...+...-+-++|.+|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 4788876665554 333211 0 001234566788999999999999999873
No 254
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.21 E-value=0.25 Score=53.07 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=53.0
Q ss_pred EEEeeeccCcchHHHHH-HHHHcchhhh-----cccceEEEEEeCCCCCHHHHHHHHHHHccC-CC-------CChhhHH
Q 039852 206 HIISIVGMGGIGKTTLA-QLASNHVEVK-----REFHKILWACVSETFDEFRIAKAMLEALTG-ST-------SNLDALQ 271 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~-~~-------~~~~~~~ 271 (731)
..++|.|-.|+|||||| ..+.|...+. ++-+.++++-+.+..+...-..+.+..-+. .. .+.....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46799999999999997 6667754321 244567888888887544334444443331 10 1111111
Q ss_pred H-----HHHHHHHHh--CCCceEEEehhhHH
Q 039852 272 S-----LLISIDESI--AGKRFLLVLDDVML 295 (731)
Q Consensus 272 ~-----~~~~l~~~l--~~kr~llvlDdvw~ 295 (731)
+ ....+-+++ +++.+|+|+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 112233333 58999999999843
No 255
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.21 E-value=0.23 Score=53.11 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=56.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChh-----hHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLD-----ALQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~-----~~~ 271 (731)
=.-++|+|..|+|||+|+.++..+.. +.+-+.++++-+.+... ..++.+++...-... ..+.. ...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 34789999999999999999877633 23347888888877764 345666655431111 11111 111
Q ss_pred HHHHHHHHHh---CCCceEEEehhhH
Q 039852 272 SLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
.....+-+++ +|+++|+++||+-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChH
Confidence 2223344554 4799999999984
No 256
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.36 Score=48.09 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=54.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhh--cccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVK--REFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
-|+|-++|++|.|||+|.++++++-.++ +.+.....+.+. -..+....... ...-+..+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 4789999999999999999999976554 344443334332 22333333322 22344556667777777
Q ss_pred CCc--eEEEehhhHHHHHHHHh
Q 039852 283 GKR--FLLVLDDVMLVLFKRLA 302 (731)
Q Consensus 283 ~kr--~llvlDdvw~~lf~~~a 302 (731)
++. +++.+|+|-.--..+.+
T Consensus 247 d~~~lVfvLIDEVESLa~aR~s 268 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESLAAARTS 268 (423)
T ss_pred CCCcEEEEEeHHHHHHHHHHHh
Confidence 655 45667999753333433
No 257
>PRK15453 phosphoribulokinase; Provisional
Probab=94.20 E-value=0.2 Score=49.79 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=44.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC--CCCHHHHHHHHHH--Hcc--CCC--CChhhHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE--TFDEFRIAKAMLE--ALT--GST--SNLDALQSLLI 275 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~--~~~--~~~--~~~~~~~~~~~ 275 (731)
+..+|+|.|..|.||||+|+.+.+. .+..=...+.++... .++..++-..+.. .-+ -.. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 5679999999999999999988852 221101123333222 2243333222211 111 112 56777888888
Q ss_pred HHHHHhCC
Q 039852 276 SIDESIAG 283 (731)
Q Consensus 276 ~l~~~l~~ 283 (731)
.++....+
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 78776654
No 258
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.19 E-value=0.035 Score=49.97 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=19.4
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
||-++|+.|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999886
No 259
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.18 E-value=0.056 Score=55.14 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=45.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+++|.++.++++++.+...+...+..-+|+-++|+-|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999887765567789999999999999999998887
No 260
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.18 E-value=0.2 Score=53.76 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=54.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhh-----HH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDA-----LQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~-----~~ 271 (731)
=..++|+|..|+|||||+.++..+..... =+.++++-+.+... +.++..++...-... ..+... ..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999998876433221 14577777766654 456666666532111 111111 11
Q ss_pred HHHHHHHHHh---CCCceEEEehhhH
Q 039852 272 SLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
.....+-+++ +|+++|+++||+-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 1223345555 7899999999984
No 261
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.18 E-value=0.18 Score=54.55 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=33.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC--HHHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD--EFRIAKAMLEALT 261 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~~~ 261 (731)
-+|++++|..|+||||++.++......+..-..+..|+. +.+. ..+-++...+..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilG 313 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILG 313 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhC
Confidence 379999999999999999999874333322223444443 3332 2333444444443
No 262
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.17 E-value=0.036 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=22.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+.++|.|+|..|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 263
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.17 E-value=0.035 Score=47.80 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=18.5
Q ss_pred EeeeccCcchHHHHHHHHHcchhhhcccc
Q 039852 208 ISIVGMGGIGKTTLAQLASNHVEVKREFH 236 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~ 236 (731)
|-|+|..|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 46899999999999999998 5666664
No 264
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.15 E-value=0.028 Score=53.89 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
||+|.|..|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998773
No 265
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.15 E-value=0.067 Score=52.21 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.3
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|.|+|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999873
No 266
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=0.25 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+-.+|+++|..|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 267
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.15 E-value=0.029 Score=52.72 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.3
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
||+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 268
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.14 E-value=0.17 Score=53.70 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=52.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCH-HHHHHHHHHHccCC-------CCChhhH-----H
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDE-FRIAKAMLEALTGS-------TSNLDAL-----Q 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~~i~~~~~~~-------~~~~~~~-----~ 271 (731)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+.+.... .++..+++..-... ..+.... .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3579999999999999999998732 2256666667776543 45555554432111 1111111 1
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +|+++|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1112233444 5899999999984
No 269
>PRK03839 putative kinase; Provisional
Probab=94.13 E-value=0.035 Score=52.27 Aligned_cols=22 Identities=45% Similarity=0.785 Sum_probs=20.2
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|.|+|+.|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999984
No 270
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.11 E-value=0.05 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999974
No 271
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.10 E-value=0.15 Score=48.82 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++..+|.|+|..|+||||+|+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999883
No 272
>PRK08149 ATP synthase SpaL; Validated
Probab=94.09 E-value=0.21 Score=53.12 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=50.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccCC-------CCChhh-----HH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTGS-------TSNLDA-----LQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~-------~~~~~~-----~~ 271 (731)
-..++|+|..|+|||||++.+.+... -+.++...+.... ++.++..+.+...... ..+... ..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 45789999999999999999998432 2333334444333 4556666665532211 111111 11
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +||++|+++||+-
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchH
Confidence 1222233333 5999999999984
No 273
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.75 Score=46.77 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=73.0
Q ss_pred cCCCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC
Q 039852 175 IDEEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF 247 (731)
Q Consensus 175 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 247 (731)
....++-|-++.+++|.+.+.-.-.. +-+..+=|-.+|++|.|||-||++|+| +....|= .|..+
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtFI-----rvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATFI-----RVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceEE-----EeccH-
Confidence 34456778888888877765321110 123466788999999999999999999 4444332 22221
Q ss_pred CHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC-CCceEEEehhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHcC
Q 039852 248 DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA-GKRFLLVLDDVMLVLFKRLAFFGRSTEKCEKLEQIGQRIARKCK 326 (731)
Q Consensus 248 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~llvlDdvw~~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~ 326 (731)
+ +.+...+. -..+...+.+..+ .....|.+|.+.. .-..-|... ...+.+.+..-.+.+...+
T Consensus 220 ---E----lVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDA--Ig~kR~d~~-t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 220 ---E----LVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDA--IGAKRFDSG-TSGDREVQRTMLELLNQLD 283 (406)
T ss_pred ---H----HHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhh--hhcccccCC-CCchHHHHHHHHHHHHhcc
Confidence 2 22222221 1234455555555 4567777888752 111111111 1234566666667777777
Q ss_pred CC
Q 039852 327 GL 328 (731)
Q Consensus 327 gl 328 (731)
|.
T Consensus 284 GF 285 (406)
T COG1222 284 GF 285 (406)
T ss_pred CC
Confidence 74
No 274
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.04 E-value=0.07 Score=57.18 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=36.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++||++.++.+...+..+. -|-|.|.+|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 58999999999998887543 4778999999999999999984
No 275
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.04 E-value=0.32 Score=46.41 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.6
Q ss_pred EEEeeeccCcchHHHHHHHHHcch
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
..|.|.|..|+||||+|+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999853
No 276
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.03 E-value=0.19 Score=56.30 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+..+. -..-+-++|..|+||||+|+.+.+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3479999999999999887432 2446788999999999999998773
No 277
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.03 E-value=0.21 Score=53.11 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=55.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhc--ccc---------eEEEEEeCCCCCHHHHHHHHHHHcc-CC-------CCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKR--EFH---------KILWACVSETFDEFRIAKAMLEALT-GS-------TSN 266 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~i~~~i~~~~~-~~-------~~~ 266 (731)
.-++|.|-.|+|||||+.++.++..... -.| .++++-+.+.....+...+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4789999999999999999987644100 012 5677778888666676666666544 11 111
Q ss_pred hhhHH-----HHHHHHHHHhC---CCceEEEehhhH
Q 039852 267 LDALQ-----SLLISIDESIA---GKRFLLVLDDVM 294 (731)
Q Consensus 267 ~~~~~-----~~~~~l~~~l~---~kr~llvlDdvw 294 (731)
..... .....+-++++ |+++|+++||+-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 11111 11223445444 799999999984
No 278
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.96 Score=50.59 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHh
Confidence 478898888888888776432 2467888999999999999988873
No 279
>PRK04040 adenylate kinase; Provisional
Probab=94.01 E-value=0.039 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|.|+|+.|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999883
No 280
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.99 E-value=0.075 Score=54.18 Aligned_cols=85 Identities=25% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCC-----CChhhHHHHHHHH
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGST-----SNLDALQSLLISI 277 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~-----~~~~~~~~~~~~l 277 (731)
+.-+++-|+|..|+||||||-.+... .+..-..++|+...+.+++... ..++.+. ...+..++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 35679999999999999999988873 4444567999999988887543 3332211 0112234444455
Q ss_pred HHHhC-CCceEEEehhhH
Q 039852 278 DESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 278 ~~~l~-~kr~llvlDdvw 294 (731)
.+.++ +.--++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 55554 444588889873
No 281
>PHA00729 NTP-binding motif containing protein
Probab=93.98 E-value=0.068 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999884
No 282
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.93 E-value=0.035 Score=29.34 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=8.3
Q ss_pred cccEEeecCCcccccc
Q 039852 410 HLRYLNLSGQDIVQLS 425 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp 425 (731)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777766655
No 283
>PRK14974 cell division protein FtsY; Provisional
Probab=93.92 E-value=0.32 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+..+|.++|+.|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998888776
No 284
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.91 E-value=0.23 Score=53.03 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=51.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCH-HHHHHHHHHHccCC-------CCChhhH-----H
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDE-FRIAKAMLEALTGS-------TSNLDAL-----Q 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~~i~~~~~~~-------~~~~~~~-----~ 271 (731)
-..++|+|..|+|||||++.+.+... -+..+.+-+.+.... .++..+.+..-+.. ..+.... .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999998432 245555667666543 35554444432111 1111111 1
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +|+.+|+++||+-
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1222234444 5899999999983
No 285
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.90 E-value=0.23 Score=52.80 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCC----CCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSD----QQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++++|.+..++.+.+.+.....+ +..-..-+-++|+.|+||||+|+.+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 46889899999999988754310 001245688999999999999998865
No 286
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.90 E-value=0.15 Score=53.49 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred CccccchhHHHHHHHHHhcC-----C-C--CCCCCcEEEeeeccCcchHHHHHHHHHcchhhhccc---ceEEEEEe-CC
Q 039852 178 EEICGRVGERNELLSKMLCE-----S-S--DQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREF---HKILWACV-SE 245 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~-----~-~--~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~v-s~ 245 (731)
..++|.++.++.+...+... . + ......+-|-++|+.|+||||+|+.+... ....| +..-+... ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45889888888887666531 0 0 00112367889999999999999999984 33333 22212211 12
Q ss_pred CCCHHHHHHHHHHH
Q 039852 246 TFDEFRIAKAMLEA 259 (731)
Q Consensus 246 ~~~~~~i~~~i~~~ 259 (731)
..+..++.+.+...
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 23566666665544
No 287
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.88 E-value=0.089 Score=49.24 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=24.5
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEE
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWAC 242 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 242 (731)
-.-+.++|..|+|||.||.++.+... ... ..+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g-~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKG-YSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCC-cceeEee
Confidence 35689999999999999999998532 222 2345553
No 288
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.86 E-value=0.04 Score=51.59 Aligned_cols=26 Identities=46% Similarity=0.608 Sum_probs=23.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchh
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVE 230 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 230 (731)
..+|+|-||=|+||||||+++.++-.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 56999999999999999999999543
No 289
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.051 Score=48.60 Aligned_cols=24 Identities=38% Similarity=0.713 Sum_probs=21.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+.+|+.|+|.+|+||||+.+.+-.
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999887776
No 290
>PRK00625 shikimate kinase; Provisional
Probab=93.84 E-value=0.042 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|.++||.|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 291
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.82 E-value=0.061 Score=51.65 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchh
Q 039852 177 EEEICGRVGERNE---LLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVE 230 (731)
Q Consensus 177 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 230 (731)
-++++|.++++.+ |++.|.....-++=..+-|-.+|+.|.|||.+|+++.|..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 3578998877654 55666543221222467889999999999999999999544
No 292
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.80 E-value=0.39 Score=47.37 Aligned_cols=86 Identities=23% Similarity=0.176 Sum_probs=52.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCC-------------------
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGST------------------- 264 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------------- 264 (731)
.-.++.|+|..|+||||+|.++... ..+ +=..++|++..+. ..++.+++. +++-..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEecccccc
Confidence 5679999999999999999998543 222 2346888888655 345555432 222110
Q ss_pred -CChhhHHHHHHHHHHHhCC-CceEEEehhhH
Q 039852 265 -SNLDALQSLLISIDESIAG-KRFLLVLDDVM 294 (731)
Q Consensus 265 -~~~~~~~~~~~~l~~~l~~-kr~llvlDdvw 294 (731)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334555666666653 44478888874
No 293
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.16 Score=57.43 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++++|.+..++.+..++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999998888886432 2356779999999999999998863
No 294
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.78 E-value=0.22 Score=53.13 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=47.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCC------CCChhh-----HHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGS------TSNLDA-----LQSL 273 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~------~~~~~~-----~~~~ 273 (731)
-..++|+|..|+|||||++.+...... ...+++..--..-++.++....+...... ..+... ....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 457999999999999999998874221 12233332223334444444443332111 111111 1111
Q ss_pred HHHHHHHh--CCCceEEEehhhH
Q 039852 274 LISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 274 ~~~l~~~l--~~kr~llvlDdvw 294 (731)
...+-+++ +++.+|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 22233333 4899999999984
No 295
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.77 E-value=0.1 Score=53.44 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=34.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
.+++.+.|.|||||||+|-+..- ........++-|++....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988544 23333355776777766666555443
No 296
>PLN02924 thymidylate kinase
Probab=93.75 E-value=0.44 Score=46.27 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=34.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEA 259 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 259 (731)
.-..|.|-|..|+||||+|+.+.+.-..+ .+....+-.........+..++++..
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~~ 69 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLSN 69 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHhC
Confidence 45689999999999999999999854432 24433322222223345555565543
No 297
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.73 E-value=0.084 Score=47.93 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 185 GERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
+..+++.++|. + +++.++|..|||||||...+..+.
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 56777888885 3 799999999999999999999863
No 298
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.72 E-value=0.059 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=18.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999884
No 299
>CHL00176 ftsH cell division protein; Validated
Probab=93.71 E-value=0.12 Score=58.46 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=34.4
Q ss_pred CCccccchhHHHHHHH---HHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLS---KMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.++.++++.+ ++..... -+....+-|-++|.+|.|||++|+++++.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468888766655544 4332211 01123456889999999999999999884
No 300
>PLN02348 phosphoribulokinase
Probab=93.70 E-value=0.32 Score=50.81 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+...+|+|.|..|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999883
No 301
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.70 E-value=0.16 Score=50.05 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=43.9
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC--CCCHHHHHHHHHHHc----cCCC--CChhhHHHHHHHHH
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE--TFDEFRIAKAMLEAL----TGST--SNLDALQSLLISID 278 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~~----~~~~--~~~~~~~~~~~~l~ 278 (731)
||+|.|..|.||||+|+.+...- +..=...+.++... .++..+.-..+.... .-.. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999888732 21111223333222 123233322222221 1122 56777888888888
Q ss_pred HHhCCCc
Q 039852 279 ESIAGKR 285 (731)
Q Consensus 279 ~~l~~kr 285 (731)
....++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8777654
No 302
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.69 E-value=0.047 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 303
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=1.3 Score=50.01 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=37.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3479999988899998887432 2456778999999999999888763
No 304
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.69 E-value=0.22 Score=46.09 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=43.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 039852 180 ICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEA 259 (731)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 259 (731)
++|....+.++++.+..-.. ...+| -|+|..|.||+.+|+.+++...- .-...+-|+.+ .++.+.+..++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~pV-lI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~-~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDLPV-LITGETGTGKELLARAIHNNSPR--KNGPFISVNCA-ALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS-E-EEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETT-TS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCCCE-EEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehh-hhhcchhhhhhhcc
Confidence 47888888888888776553 23444 49999999999999999994221 11233334443 33444444455543
No 305
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.67 E-value=0.32 Score=53.25 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..+..+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887533 245667899999999999998876
No 306
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.64 E-value=0.094 Score=46.00 Aligned_cols=41 Identities=20% Similarity=0.073 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 185 GERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
++..++-+.|...-. .-.+|.+.|.-|.||||+++.+.+..
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444443221 34589999999999999999999853
No 307
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.57 E-value=0.14 Score=45.77 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=31.1
Q ss_pred EeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHH
Q 039852 208 ISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
|-++|..|+|||+||+.++.. ... ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceee
Confidence 568999999999999999983 321 2334677888888776643
No 308
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.55 E-value=0.23 Score=51.07 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+.++|||..|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999994
No 309
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.50 E-value=0.69 Score=47.66 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+..||.++|..|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999998874
No 310
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.48 E-value=0.081 Score=48.22 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=24.6
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEE
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILW 240 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~w 240 (731)
||+|+|..|+||||++.++...-+- ..+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 6899999999999999999984332 23454443
No 311
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.46 E-value=0.14 Score=59.68 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=37.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-+++.|.++.++++.+++...-.. +-...+-|.++|..|.||||||+.+++.
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 346889999988887776421000 0123456889999999999999999984
No 312
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.46 E-value=0.12 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcch
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 46789999999999999999998864
No 313
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.46 E-value=0.055 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|.|+|..|+||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999983
No 314
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.44 E-value=0.29 Score=52.15 Aligned_cols=86 Identities=24% Similarity=0.286 Sum_probs=49.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccCC-------CCChhhHHH----
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTGS-------TSNLDALQS---- 272 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~-------~~~~~~~~~---- 272 (731)
-..++|+|..|+|||||++.+.+.. +.+..+++.+.+.. .+.++..+....-... ..+....+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4588999999999999999998843 23455555555543 3335555543211000 011111111
Q ss_pred -HHHHHHHHh--CCCceEEEehhhH
Q 039852 273 -LLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 273 -~~~~l~~~l--~~kr~llvlDdvw 294 (731)
....+-+++ +|+++|+++||+-
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122233444 4899999999984
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.40 E-value=0.3 Score=45.54 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||.+.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 459999999999999999999874
No 316
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.40 E-value=0.61 Score=46.05 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=34.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAM 256 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 256 (731)
.-.++-|.|.+|.|||++|.++.... . ..-...+||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 56899999999999999998765421 2 2245678887655 445555543
No 317
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.40 E-value=0.33 Score=51.77 Aligned_cols=86 Identities=26% Similarity=0.236 Sum_probs=51.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhhHH-----
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDALQ----- 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~~~----- 271 (731)
-..++|+|..|+|||||.+.+++... -+.++++-+.+... +.++....+..-... ..+.....
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 45899999999999999999998532 25677777777654 344444433321111 11111111
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +|+++|+++||+-
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1112233333 5999999999983
No 318
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.38 E-value=0.29 Score=56.98 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..++.|..++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 478999998999998887432 2357789999999999999988763
No 319
>PRK06217 hypothetical protein; Validated
Probab=93.37 E-value=0.052 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEeeeccCcchHHHHHHHHHcch
Q 039852 207 IISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
.|.|.|..|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999853
No 320
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.37 E-value=0.12 Score=46.76 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=25.4
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEE
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWA 241 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 241 (731)
.||=|.|..|.||||||+++.. +....-..+.+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 5888999999999999999998 444433444444
No 321
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.31 E-value=0.21 Score=54.33 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=48.6
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceE-EEEEeCCCCCHH-HHHHHHHHHccCCCCC---h--hhHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKI-LWACVSETFDEF-RIAKAMLEALTGSTSN---L--DALQSLLISID 278 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~~~-~i~~~i~~~~~~~~~~---~--~~~~~~~~~l~ 278 (731)
....|||..|+|||||++.|.+.... .+-++. +.+-|.+.+... ++.+.+-..+.....+ . .....+...+-
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999983221 222333 345556655432 3333331111111111 1 11222333344
Q ss_pred HHh--CCCceEEEehhhH
Q 039852 279 ESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l--~~kr~llvlDdvw 294 (731)
+++ .++.++|++|++-
T Consensus 496 e~fre~G~dVlillDSlT 513 (672)
T PRK12678 496 KRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHcCCCEEEEEeCch
Confidence 444 5899999999983
No 322
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.31 E-value=0.41 Score=43.44 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.5
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999886
No 323
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.29 E-value=0.083 Score=48.95 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=24.7
Q ss_pred ceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC-CCCCCccCceE
Q 039852 433 ILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR-LTGLRTLGEFH 489 (731)
Q Consensus 433 ~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~-L~~L~~L~~~~ 489 (731)
+...+||++ +.+..++ .+..+..|..|.++.| .++.+-+.+.. +.+|+.|.+.+
T Consensus 43 ~~d~iDLtd-Ndl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccceecccc-cchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 444555555 3333332 2444555555555555 44444444443 23355554433
No 324
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.24 E-value=0.062 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+...|.++|+.|+||||+|+.+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999884
No 325
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.53 Score=50.16 Aligned_cols=55 Identities=25% Similarity=0.207 Sum_probs=39.6
Q ss_pred CCccccchh---HHHHHHHHHhcCCCC---CCCCcEEEeeeccCcchHHHHHHHHHcchhh
Q 039852 177 EEEICGRVG---ERNELLSKMLCESSD---QQKGLHIISIVGMGGIGKTTLAQLASNHVEV 231 (731)
Q Consensus 177 ~~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~ 231 (731)
-.++-|-++ |.++|+++|.+...- +++=.+=|-++|++|.|||-||++|.....|
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 456778765 556778888743211 1233567889999999999999999996555
No 326
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.19 E-value=0.26 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3778999999999999999874
No 327
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.18 E-value=0.25 Score=52.78 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=34.4
Q ss_pred CccccchhHHHHHHHHHhc-------CCC---CCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLC-------ESS---DQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~-------~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++|.+..++.+...+.. ... +....-.-|-++|..|+|||++|+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4589999888877554421 100 0011235688999999999999999986
No 328
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.16 E-value=0.053 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998873
No 329
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.14 E-value=0.27 Score=56.76 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHhcCC---CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCES---SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.++.++.+.+.+.... .+.+.....+-++|+.|+|||++|+.+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999998888876421 111234668899999999999999999873
No 330
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.21 Score=55.00 Aligned_cols=72 Identities=22% Similarity=0.140 Sum_probs=46.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC--CCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET--FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
..-|-|.|..|+|||+||+++++... +++.-.+..|+.+.- -..+.+++.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 35678999999999999999999544 444344444544332 1233333332 233445566
Q ss_pred CCceEEEehhhH
Q 039852 283 GKRFLLVLDDVM 294 (731)
Q Consensus 283 ~kr~llvlDdvw 294 (731)
...-+|||||+.
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 778899999996
No 331
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.13 E-value=0.28 Score=54.33 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=34.3
Q ss_pred CCccccchhHHHHHHHHHh---cCCC---CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKML---CESS---DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.++.++++.+.+. .... .+....+-+-++|++|.|||++|+.+.+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4578898877666554433 1100 00122345789999999999999999984
No 332
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.12 E-value=0.056 Score=48.84 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=20.1
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
||.|+|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 333
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.10 E-value=0.094 Score=49.83 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=36.4
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEE
Q 039852 182 GRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWAC 242 (731)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 242 (731)
.+..+-...++.|. +..++.+.|.+|.|||.||-+..-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34455566777776 355999999999999999988887655567888887764
No 334
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.09 E-value=0.14 Score=44.10 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHHhcCCC-CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESS-DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|..-..+.+++.+..--. +..++.=|++..|..|+|||.+|+.+.++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3577877666666666543211 11346789999999999999988877764
No 335
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.07 E-value=0.053 Score=45.97 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.5
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|-|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998874
No 336
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.15 Score=57.79 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=34.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+.++||++++.++++.|..... +-+| .+|-+|||||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCCe--EecCCCCCHHHHHHHHHH
Confidence 4589999999999999986543 2222 579999999998766555
No 337
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.05 E-value=0.068 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.9
Q ss_pred EeeeccCcchHHHHHHHHHcchh
Q 039852 208 ISIVGMGGIGKTTLAQLASNHVE 230 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~~~ 230 (731)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987543
No 338
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.02 E-value=0.11 Score=49.10 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=29.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
.++|.|+|+.|+|||||++++.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46899999999999999999998 55566755555443
No 339
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.01 E-value=0.07 Score=48.24 Aligned_cols=20 Identities=45% Similarity=0.786 Sum_probs=18.5
Q ss_pred EEeeeccCcchHHHHHHHHH
Q 039852 207 IISIVGMGGIGKTTLAQLAS 226 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~ 226 (731)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 340
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.00 E-value=0.65 Score=44.42 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=34.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAML 257 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 257 (731)
-..|.|=|+-|+||||.++.++. ..+.....++|..-.......+..++++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHH
Confidence 35789999999999999999999 5555444555544444433444444444
No 341
>PRK08006 replicative DNA helicase; Provisional
Probab=92.97 E-value=13 Score=40.61 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=39.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALT 261 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~ 261 (731)
.-.+|.|-|.+|+||||+|..+..+...+... .+++ +|-..+..++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~-~V~~--fSlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDK-PVLI--FSLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCC-eEEE--EeccCCHHHHHHHHHHHhc
Confidence 44578888999999999999888754433222 2333 3666888899988887654
No 342
>PRK13947 shikimate kinase; Provisional
Probab=92.97 E-value=0.068 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|+.|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999883
No 343
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.97 E-value=0.27 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=18.8
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-+-++|.+|.||||+|+.+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999877763
No 344
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.97 E-value=0.079 Score=51.14 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.2
Q ss_pred CCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 202 QKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 202 ~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++++|+++|..|+|||||.+++...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999998874
No 345
>PLN02796 D-glycerate 3-kinase
Probab=92.96 E-value=0.53 Score=48.41 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=22.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..-+|+|.|..|.|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5679999999999999999999874
No 346
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.95 E-value=0.44 Score=47.88 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=45.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF 247 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 247 (731)
..++|-.++..++-.++....- .+...-+.|+|+.|.|||+|...+..+ .+..=+..+-|...+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~ 89 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGEL 89 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccc
Confidence 4578888888888888876543 234557889999999999998887776 22222334445555444
No 347
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.95 E-value=0.2 Score=47.87 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.5
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 348
>PRK08181 transposase; Validated
Probab=92.92 E-value=0.38 Score=48.15 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=29.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAML 257 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 257 (731)
.-+.++|..|+|||.||..+.+. .......++|++ ..++...+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~ 150 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQ 150 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHH
Confidence 34899999999999999999984 323333445543 345555554
No 349
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.91 E-value=0.13 Score=53.23 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=26.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
.-+.++|..|+|||+||.++.+.. ...-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEH
Confidence 569999999999999999999943 222234566544
No 350
>PTZ00494 tuzin-like protein; Provisional
Probab=92.91 E-value=7.7 Score=41.08 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=59.3
Q ss_pred CcCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHH
Q 039852 174 LIDEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIA 253 (731)
Q Consensus 174 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 253 (731)
......+|.|+.+-.-+-+.|..-+. .+.+++.+.|.-|.||++|.+.....+.+ ..++|.|...- +-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chH
Confidence 33456788888877777776665543 47899999999999999999887764443 45667776653 457
Q ss_pred HHHHHHccCCCCC
Q 039852 254 KAMLEALTGSTSN 266 (731)
Q Consensus 254 ~~i~~~~~~~~~~ 266 (731)
+.+.+.++.+..+
T Consensus 436 rsVVKALgV~nve 448 (664)
T PTZ00494 436 RSVVRALGVSNVE 448 (664)
T ss_pred HHHHHHhCCCChh
Confidence 7888888876543
No 351
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.91 E-value=0.1 Score=48.38 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=30.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhh-cccceEEEEEeCCCCC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVK-REFHKILWACVSETFD 248 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~ 248 (731)
...++-+.|+.|+|||.||+.+.. .+. +.....+-+..+.-.+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 356888999999999999999998 333 3444555555554433
No 352
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.90 E-value=0.071 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|.+.|+.|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999874
No 353
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.90 E-value=0.071 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|+|+|..|+||||||+.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999884
No 354
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.89 E-value=0.5 Score=50.57 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=54.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhhH-----H
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDAL-----Q 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~~-----~ 271 (731)
=..++|.|..|+|||||+.++..+... ++=..++++-+.+... +.++..++...-... ..+.... .
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999998874322 2223677777766654 456666665432111 1111111 1
Q ss_pred HHHHHHHHHh---CCCceEEEehhhH
Q 039852 272 SLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
.....+-+++ +|+++|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchh
Confidence 1223345555 5789999999984
No 355
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.89 E-value=0.13 Score=52.82 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=27.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRI 252 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 252 (731)
++|.+.|-|||||||+|-+..-...-++ ..++-|+.....+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHH
Confidence 6889999999999999977665322222 23444555444443333
No 356
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.89 E-value=0.84 Score=43.74 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=34.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.+..++.+++--..-.. +..-.=|-.||.-|.||+.|++++.+.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e 108 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE 108 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH
Confidence 4689988888877753221111 123345678999999999999999993
No 357
>PRK13949 shikimate kinase; Provisional
Probab=92.84 E-value=0.071 Score=49.46 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|+.|.||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 358
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.83 E-value=0.12 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=23.5
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++..+|+|.|..|.||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 36889999999999999999999873
No 359
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.83 E-value=0.059 Score=52.05 Aligned_cols=84 Identities=23% Similarity=0.177 Sum_probs=53.0
Q ss_pred ccccccEEeecCC--ccc-cccccccCCCceeEEeccCCcCcccCc--ccccCCCCcceeeccCCccccccc--cc-cCC
Q 039852 407 KLVHLRYLNLSGQ--DIV-QLSETLCELYILEKLDISYCMDLEELP--EGIKKLINMRHLLNDGTDTLRYMV--VG-IGR 478 (731)
Q Consensus 407 ~L~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p--~~-i~~ 478 (731)
.|++|++|.++.| ++. .++-...++.+|++|++++ ++++.+. .....+.+|..|++..|......- .. +.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 4779999999999 443 5665666779999999999 5555321 125667788888888874332100 01 223
Q ss_pred CCCCCccCceEeC
Q 039852 479 LTGLRTLGEFHVS 491 (731)
Q Consensus 479 L~~L~~L~~~~~~ 491 (731)
+++|..|+.+.+.
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 4555555554443
No 360
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.83 E-value=0.13 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.5
Q ss_pred CCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 202 QKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 202 ~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+++.+||++.|-|||||||+|-.+..
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 35789999999999999998877665
No 361
>PRK08760 replicative DNA helicase; Provisional
Probab=92.80 E-value=7.5 Score=42.69 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=37.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEAL 260 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~ 260 (731)
.-.+|.|-|.+|+||||+|..+..+...+... .+++ +|-..+..++...++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~--fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAV--FSMEMSASQLAMRLISSN 281 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEE--EeccCCHHHHHHHHHHhh
Confidence 45688899999999999999988754433333 2333 355666677777766543
No 362
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.76 E-value=0.081 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999874
No 363
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.75 E-value=0.58 Score=46.53 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=48.5
Q ss_pred EEEeeeccCcchHHHHH-HHHHcchhhhcccceE-EEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhhHHH---
Q 039852 206 HIISIVGMGGIGKTTLA-QLASNHVEVKREFHKI-LWACVSETFD-EFRIAKAMLEALTGS-------TSNLDALQS--- 272 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~~~~--- 272 (731)
.-++|+|..|+|||+|| +.+.+.. +-+.+ +++-+.+... ..++.+++...-... ..+.....+
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 47899999999999995 6676631 22443 6666666654 455666655432111 111111111
Q ss_pred --HHHHHHHHh--CCCceEEEehhhH
Q 039852 273 --LLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 273 --~~~~l~~~l--~~kr~llvlDdvw 294 (731)
....+-+++ +|+.+|+++||+-
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 111222332 5899999999984
No 364
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.73 E-value=0.061 Score=28.39 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=8.3
Q ss_pred cccceeeecccccCcCCC
Q 039852 670 PRLSSFEIKWCPKLKALP 687 (731)
Q Consensus 670 p~L~~L~i~~c~~L~~lp 687 (731)
|+|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456677777764 66554
No 365
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.69 E-value=0.071 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|.++|..|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999884
No 366
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.69 E-value=0.56 Score=50.52 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=53.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccc--eEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhhH-----
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFH--KILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDAL----- 270 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~~----- 270 (731)
..++|.|-.|+|||||+.++.++....+.+. .++++-+.+... +.++..++...-... ..+....
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4789999999999999999998654332222 456666666554 455666655432111 1111111
Q ss_pred HHHHHHHHHHh---CCCceEEEehhhH
Q 039852 271 QSLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
......+-+++ +|+++|+++||+-
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 11122344554 4889999999983
No 367
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.68 E-value=0.3 Score=51.48 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHHHHhcC--------CCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCE--------SSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...++|.++.++.+..++... ........+-|-++|+.|+||||+|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999888777531 0000112367899999999999999999884
No 368
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.68 E-value=0.12 Score=49.46 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=21.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
=.+++|+|..|.|||||++.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 369
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.67 E-value=0.16 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcch
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
-.++.|.|+.|+||+||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999954
No 370
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.64 E-value=0.075 Score=53.94 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.|+|+|-||+||||+|..+..-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 47899999999999998887763
No 371
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.63 E-value=0.077 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999884
No 372
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.62 E-value=0.38 Score=51.28 Aligned_cols=86 Identities=24% Similarity=0.238 Sum_probs=49.5
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC-CCCHHHHHHHHHHHccCC-------CCCh-----hhHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE-TFDEFRIAKAMLEALTGS-------TSNL-----DALQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~~~~~-------~~~~-----~~~~ 271 (731)
-..++|+|..|+|||||++.+...... +..+...+.+ ...+.++.+..+..-+.. ..+. ....
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999885332 2222223333 355666666555442211 1111 1111
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +++..|+++||+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchH
Confidence 2222333333 4899999999974
No 373
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.62 E-value=0.16 Score=46.19 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+|++|+|+.|+|||||...+...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 479999999999999999999873
No 374
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.61 E-value=0.065 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+.|-+.|.+|+||||+|+.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4567789999999999999987
No 375
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.61 E-value=0.13 Score=48.69 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=35.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.++||-++.++.+.-.-.+ .+.+=+-|.|++|+||||-+..+.+
T Consensus 26 l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 34799999988887766653 3567788999999999997776665
No 376
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.60 E-value=0.14 Score=54.95 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..++.+..++..+. -...+-++|+.|+||||+|..+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHH
Confidence 478998888888888886432 234677899999999999998876
No 377
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=0.51 Score=53.38 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..+..+..++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHH
Confidence 478999999999988887432 2346778999999999999998874
No 378
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.55 E-value=0.65 Score=48.37 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=35.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+++|-+....++..+...... ...-+-+.|+.|+||||+|..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHH
Confidence 467778888888888874331 2335889999999999999888873
No 379
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.55 E-value=0.37 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.1
Q ss_pred EeeeccCcchHHHHHHHHHcch
Q 039852 208 ISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~~ 229 (731)
+.+.|+.|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999743
No 380
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.54 E-value=0.1 Score=43.71 Aligned_cols=22 Identities=41% Similarity=0.338 Sum_probs=20.0
Q ss_pred cEEEeeeccCcchHHHHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLAS 226 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~ 226 (731)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 381
>PRK13975 thymidylate kinase; Provisional
Probab=92.54 E-value=0.09 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999984
No 382
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.48 E-value=0.63 Score=47.79 Aligned_cols=86 Identities=21% Similarity=0.205 Sum_probs=48.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC-CCHHHHHHHHHHHccCC-------CCChhh-----HH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET-FDEFRIAKAMLEALTGS-------TSNLDA-----LQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~~~~~-------~~~~~~-----~~ 271 (731)
-..++|+|..|.|||||.+.+.+.... +..+.+-+... -+..++....+..-... ..+... ..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999999999984331 23333444432 34455555554432211 111111 11
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ ++|.+|+++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 1122233333 5899999999974
No 383
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.46 E-value=0.15 Score=51.11 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=26.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
++|+|+|.+|+|||||+..+... .+... .++-+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~--L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR--LSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhCC-CEEEEEE
Confidence 68999999999999999999984 43333 3444443
No 384
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=92.45 E-value=0.74 Score=50.89 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=74.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchh---hhcccceEEE--EEeCCCCCHHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVE---VKREFHKILW--ACVSETFDEFR 251 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~F~~~~w--v~vs~~~~~~~ 251 (731)
+..+-+|+.+..+|-.++...-++ +..-..+-|.|.+|.|||..+..|.+.-+ -++.-....+ ++.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 345678999999999988765543 23445999999999999999999998433 1222222333 33344456889
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHHHhC-----CCceEEEehhh
Q 039852 252 IAKAMLEALTGSTSNLDALQSLLISIDESIA-----GKRFLLVLDDV 293 (731)
Q Consensus 252 i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~llvlDdv 293 (731)
+...|+.++.+.... +......+..+.. .+..++++|++
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDEl 517 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDEL 517 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccH
Confidence 999999999886432 2222333333332 34577777876
No 385
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.44 E-value=0.8 Score=47.04 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=35.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAM 256 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i 256 (731)
..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 488999999999999999999953 235677787776653 34555554
No 386
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.44 E-value=0.41 Score=51.01 Aligned_cols=86 Identities=24% Similarity=0.267 Sum_probs=48.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccCC-------CCChhhHH-----
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTGS-------TSNLDALQ----- 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~-------~~~~~~~~----- 271 (731)
-..++|+|..|+|||||++.+...... +..+.+.+.... .+.++.++.+..-... ..+.....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 357999999999999999999874321 232333333433 3444555444332111 11111111
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +++++|+++||+-
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122244444 5899999999974
No 387
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.42 E-value=0.09 Score=50.98 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=19.3
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998877766
No 388
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.40 E-value=0.094 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+.|.|+|+.|.||||+|+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999874
No 389
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.39 E-value=0.016 Score=64.21 Aligned_cols=174 Identities=18% Similarity=0.111 Sum_probs=90.6
Q ss_pred CCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEe-cCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCC
Q 039852 510 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFD-KKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNT 588 (731)
Q Consensus 510 L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 588 (731)
.+.|+.+.+..+..+.+. ........+++|+.|+++.+ .... ............+++|+.|+++++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD--SLDALALKCPNLEELDLSGCCLLIT-------LSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred CchhhHhhhcccccCChh--hHHHHHhhCchhheecccCcccccc-------cchhHhhhhhhhcCCcCccchhhhhccC
Confidence 556666666665554432 13445667788888888763 1100 0011122233456788888888776321
Q ss_pred CCccchhhcccCCCCCC-CCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccc
Q 039852 589 VFRSLLVQKLRAAASFG-KMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVID 667 (731)
Q Consensus 589 ~lp~~~~~~L~~l~~l~-~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 667 (731)
.. .+..+. .+|+|++|.+.+|..++.-+-... ...+|+|++|++++|..+.+-..... ..
T Consensus 258 --d~-------~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i----~~~~~~L~~L~l~~c~~~~d~~l~~~------~~ 318 (482)
T KOG1947|consen 258 --DI-------GLSALASRCPNLETLSLSNCSNLTDEGLVSI----AERCPSLRELDLSGCHGLTDSGLEAL------LK 318 (482)
T ss_pred --ch-------hHHHHHhhCCCcceEccCCCCccchhHHHHH----HHhcCcccEEeeecCccchHHHHHHH------HH
Confidence 00 111112 277888888877776443322211 24678888888888766522111111 11
Q ss_pred cCcccceeeecccc---cCcCCCC-CCCCC--CCccEEEEccCchhHHhh
Q 039852 668 IMPRLSSFEIKWCP---KLKALPD-YIHQT--TTLKELRILMCGLLKERY 711 (731)
Q Consensus 668 ~~p~L~~L~i~~c~---~L~~lp~-~~~~l--~~L~~L~l~~c~~L~~~~ 711 (731)
.+|+|+.|.+..++ .++.+-. .+... ..+..+.+.+|+.++...
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhh
Confidence 46666665544433 3444321 11112 257777777788775543
No 390
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.38 E-value=0.74 Score=43.56 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+-++|..|+||||+|+.+.+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367889999999999999888763
No 391
>PRK13768 GTPase; Provisional
Probab=92.34 E-value=0.18 Score=50.25 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++.|.|.||+||||++..+...
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHH
Confidence 368899999999999999887763
No 392
>PRK14530 adenylate kinase; Provisional
Probab=92.34 E-value=0.09 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|.|+|+.|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 393
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.085 Score=47.00 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=31.2
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccC
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTG 262 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~ 262 (731)
+|.|-|.+|.||||+|+.+.++-.... .+...+.++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-------------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-------------eeccHHHHHHHHHcCC
Confidence 689999999999999999998533221 1334567777776554
No 394
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.32 E-value=0.13 Score=50.61 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred eeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 210 IVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 210 I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
|+|++|+||||+++.+.+.... +-...+-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~--~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES--NGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT--T-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHh--ccCCceEEEc
Confidence 6899999999999999985433 2233444554
No 395
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.30 E-value=0.094 Score=53.15 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999999987776
No 396
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.28 E-value=0.18 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|+|+|-|||||||+|-.+..-
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 68999999999999998887763
No 397
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.25 E-value=0.11 Score=47.42 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|+|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999983
No 398
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.24 E-value=0.45 Score=51.30 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=54.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHccCC--------------CCChh-
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALTGS--------------TSNLD- 268 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~--------------~~~~~- 268 (731)
=..++|+|-.|+|||||+.++..+.. +.+=+.++++-+.+... +.++..+++..-... ..+..
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~-~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHH-HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 35789999999999999998887522 11126788888877764 456666666511100 01111
Q ss_pred ----hHHHHHHHHHHHhC--C-CceEEEehhhH
Q 039852 269 ----ALQSLLISIDESIA--G-KRFLLVLDDVM 294 (731)
Q Consensus 269 ----~~~~~~~~l~~~l~--~-kr~llvlDdvw 294 (731)
........+-++++ + +++|+++||+-
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslT 272 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIF 272 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccch
Confidence 11122334566663 4 49999999984
No 399
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.24 E-value=0.22 Score=47.12 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=31.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..+.-+.-.... ..=|-++|..|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 5788988888777665552 24578999999999999999875
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.20 E-value=0.096 Score=47.76 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=19.1
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|.++|+.|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 401
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.18 E-value=0.73 Score=48.58 Aligned_cols=83 Identities=28% Similarity=0.295 Sum_probs=48.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCC-----ChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTS-----NLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 278 (731)
.-.++.|.|.+|+|||||+.++..+.. ..-..++|++.... ..++.. -+..++.... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 456999999999999999999887432 22346777765443 333322 2334433211 1223444433332
Q ss_pred HHhCCCceEEEehhhH
Q 039852 279 ESIAGKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~~kr~llvlDdvw 294 (731)
..+.-++|+|.+-
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2355678999984
No 402
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.18 E-value=0.13 Score=49.63 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+.|.|+|..|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5688999999999999999999763
No 403
>PRK13948 shikimate kinase; Provisional
Probab=92.13 E-value=0.12 Score=48.44 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999883
No 404
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.11 E-value=0.6 Score=43.17 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999985
No 405
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.09 E-value=0.2 Score=50.63 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=27.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD 248 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (731)
++|+|.|-||+||||+|-.+..--.. ..+ .++-|......+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~-~G~-kVlliD~Dpq~n 42 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE-MGK-KVMIVGCDPKAD 42 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh-CCC-eEEEEEcCCCCC
Confidence 57899999999999999887773322 222 344465555444
No 406
>COG4240 Predicted kinase [General function prediction only]
Probab=92.07 E-value=0.54 Score=44.43 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=53.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHcc-----CCCCChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALT-----GSTSNLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~-----~~~~~~~~~~~~~~~l~ 278 (731)
+.-+++|.|.-|.||||++-.+++.-..+.. ..++..+..+-+-...-.-.++++.. ...+...+..-..+.+.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLn 127 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLN 127 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHH
Confidence 5679999999999999999999996544443 45666665554433333444555532 12234556666667777
Q ss_pred HHhCCCce
Q 039852 279 ESIAGKRF 286 (731)
Q Consensus 279 ~~l~~kr~ 286 (731)
...+++.-
T Consensus 128 ai~~g~~~ 135 (300)
T COG4240 128 AIARGGPT 135 (300)
T ss_pred HHhcCCCC
Confidence 77776643
No 407
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.05 E-value=0.8 Score=45.84 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=29.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
.-.++-|.|.+|.||||+|.++..+.. + .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecC
Confidence 567999999999999999998755322 2 234677787764
No 408
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.01 E-value=0.18 Score=50.69 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE 258 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 258 (731)
+.-+++.|+|.+|.|||++|.++.. ........++||+....+ .++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~--~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP--EELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH--HHHHHHHHH
Confidence 4678999999999999999988887 445558889999887763 455544443
No 409
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.00 E-value=0.94 Score=43.50 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|+|.|..|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999884
No 410
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.98 E-value=0.2 Score=53.11 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+...
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999886432 2457889999999999999888763
No 411
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.97 E-value=0.12 Score=45.81 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcch
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
+.|-++|..|.|||||++.+-..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 568899999999999999998854
No 412
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.93 E-value=0.51 Score=50.56 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=49.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccCC-------CCChhhH-----
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTGS-------TSNLDAL----- 270 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~-------~~~~~~~----- 270 (731)
+-..++|+|..|+|||||++.+...... +..+.+-+.+.. .+.++.+.+...-... ..+....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3458899999999999999999875332 233333344333 3445555554332111 1111111
Q ss_pred HHHHHHHHHHh--CCCceEEEehhhH
Q 039852 271 QSLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
......+-+++ +|+.+|+++||+-
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11122334444 4899999999983
No 413
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.86 E-value=0.13 Score=48.83 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999884
No 414
>PRK06761 hypothetical protein; Provisional
Probab=91.86 E-value=0.23 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcch
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
++|.|.|..|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999853
No 415
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.85 E-value=0.67 Score=44.04 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=31.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhccc--------ceEEEEEeCCCCCHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREF--------HKILWACVSETFDEFRIAKAML 257 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~i~~~i~ 257 (731)
.++-|+|.+|+||||++..+.........| ..++|+..... ..++.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 488899999999999998888754433333 24677766555 334444333
No 416
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.84 E-value=0.5 Score=44.58 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|.|.|..|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999984
No 417
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.81 E-value=0.87 Score=48.55 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=48.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhh-----HH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDA-----LQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~-----~~ 271 (731)
-..++|+|..|+|||||++.+.+... -+..+.+.+..... ..++.......-... ..+... ..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999987432 23444455555433 344444444321111 111111 11
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +++++|+++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1122233443 5899999999983
No 418
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.81 E-value=0.11 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcch
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
.-|.|+|.+|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568899999999999999999863
No 419
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.79 E-value=0.32 Score=48.82 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 202 QKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 202 ~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+..+|.|+|..|.|||||...+.+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999883
No 420
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.78 E-value=0.097 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=18.7
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|.|+|..|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998874
No 421
>PRK05922 type III secretion system ATPase; Validated
Probab=91.75 E-value=0.91 Score=48.47 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=47.5
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccCCC-------CChh-----hHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTGST-------SNLD-----ALQS 272 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~-------~~~~-----~~~~ 272 (731)
..++|+|..|+|||||.+.+.+... .+....+.+.... ...+...+......... .+.. -...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999987432 2333333343332 23344444433222111 1111 1111
Q ss_pred HHHHHHHHh--CCCceEEEehhhH
Q 039852 273 LLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 273 ~~~~l~~~l--~~kr~llvlDdvw 294 (731)
....+-+++ +|+++|+++||+-
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 222344444 4899999999983
No 422
>PRK13946 shikimate kinase; Provisional
Probab=91.75 E-value=0.12 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+.|.++|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999983
No 423
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.74 E-value=1.8 Score=41.99 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeC-CCCCHHHHHHHHHHHccCCC
Q 039852 186 ERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVS-ETFDEFRIAKAMLEALTGST 264 (731)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~~~~~~ 264 (731)
+.++.+..+..... .+-+++.++|.-|.|||++++++.. ...+ +.++-|.+. +..+...+...++..+..+.
T Consensus 35 ~h~e~l~~l~~~i~---d~qg~~~vtGevGsGKTv~~Ral~~--s~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p 107 (269)
T COG3267 35 DHNEALLMLHAAIA---DGQGILAVTGEVGSGKTVLRRALLA--SLNE--DQVAVVVIDKPTLSDATLLEAIVADLESQP 107 (269)
T ss_pred hhhHHHHHHHHHHh---cCCceEEEEecCCCchhHHHHHHHH--hcCC--CceEEEEecCcchhHHHHHHHHHHHhccCc
Confidence 33444444443332 3567999999999999999994433 1111 122223443 34566778888888877632
Q ss_pred CC--hhhHHHHHHHHHHHh-CCCc-eEEEehhhHH---------HHHHHHhcCCCCC---------c-----chhhHHHH
Q 039852 265 SN--LDALQSLLISIDESI-AGKR-FLLVLDDVML---------VLFKRLAFFGRST---------E-----KCEKLEQI 317 (731)
Q Consensus 265 ~~--~~~~~~~~~~l~~~l-~~kr-~llvlDdvw~---------~lf~~~af~~~~~---------~-----~~~~l~~~ 317 (731)
.. ....++....+.+.. +++| ..+++||.-+ .+|.+..-...+. + ..+.+.++
T Consensus 108 ~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~ 187 (269)
T COG3267 108 KVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLREL 187 (269)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhh
Confidence 21 122344444444444 4777 8888998855 5565554322221 1 12334444
Q ss_pred HHHHHHHcCCCchHHHHHHHHhc
Q 039852 318 GQRIARKCKGLPLAVKTVRSLMS 340 (731)
Q Consensus 318 ~~~i~~~c~glPlai~~i~~~l~ 340 (731)
.+.|.-+..+.|+...-.+.+++
T Consensus 188 ~~R~~ir~~l~P~~~~~t~~yl~ 210 (269)
T COG3267 188 EQRIDIRIELPPLTEAETGLYLR 210 (269)
T ss_pred hheEEEEEecCCcChHHHHHHHH
Confidence 44444444557887776666665
No 424
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=3.5 Score=40.03 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=67.4
Q ss_pred CCccccchhHHHHHHHHHhcCCC-C------CCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCH
Q 039852 177 EEEICGRVGERNELLSKMLCESS-D------QQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDE 249 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~-~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (731)
..++-|-.++++++-+.....-- + +-+..+=|-.+|++|.|||-+|++|.| +....|-.++
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvi---------- 243 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVI---------- 243 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeeh----------
Confidence 34666777777776654321100 0 122456778999999999999999999 5544443222
Q ss_pred HHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCCc-eEEEehhhHHHHHHHHhcCCCCC----cchhhHHHHHHHHHHH
Q 039852 250 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR-FLLVLDDVMLVLFKRLAFFGRST----EKCEKLEQIGQRIARK 324 (731)
Q Consensus 250 ~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~llvlDdvw~~lf~~~af~~~~~----~~~~~l~~~~~~i~~~ 324 (731)
-.++.+...+ +-......+.+..+.|+ ++|.+|++. |+++..- ..+.+.+..--+++..
T Consensus 244 ---gselvqkyvg------egarmvrelf~martkkaciiffdeid-------aiggarfddg~ggdnevqrtmleli~q 307 (435)
T KOG0729|consen 244 ---GSELVQKYVG------EGARMVRELFEMARTKKACIIFFDEID-------AIGGARFDDGAGGDNEVQRTMLELINQ 307 (435)
T ss_pred ---hHHHHHHHhh------hhHHHHHHHHHHhcccceEEEEeeccc-------cccCccccCCCCCcHHHHHHHHHHHHh
Confidence 1122221111 11234555666666655 566667764 3443211 2234455555556666
Q ss_pred cCCC
Q 039852 325 CKGL 328 (731)
Q Consensus 325 c~gl 328 (731)
.+|.
T Consensus 308 ldgf 311 (435)
T KOG0729|consen 308 LDGF 311 (435)
T ss_pred ccCC
Confidence 6664
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.71 E-value=1.5 Score=39.36 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHcch
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999998853
No 426
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.69 E-value=0.25 Score=48.14 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHH
Q 039852 186 ERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAK 254 (731)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 254 (731)
+..++++.+..... +..+|+|.|.+|+||+||...+...-.-+++==.++=|.=|.+|+--.|+.
T Consensus 14 ~~~~ll~~l~~~~g----~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTG----RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-----SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcC----CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 45667777765432 578999999999999999988887433222111133334455565544443
No 427
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.69 E-value=0.91 Score=45.90 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=36.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEAL 260 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~ 260 (731)
.-.++.|.|.+|+||||++.++..+.. ..+=..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 345888999999999999998876432 22124577777655 4556666665543
No 428
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.68 E-value=0.99 Score=48.39 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=48.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccCC-------CCChhh-----HH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTGS-------TSNLDA-----LQ 271 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~-------~~~~~~-----~~ 271 (731)
-..++|+|..|+|||||++.+.+.. ..+.++...+.... +..++...+...-... ..+... ..
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998742 12344444444433 3445555554432111 111111 11
Q ss_pred HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 ~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +|+++|+++||+-
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchh
Confidence 1122233443 5899999999983
No 429
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.67 E-value=0.68 Score=49.45 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+-..++|+|..|+|||||++.+.+.
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 3468999999999999999999874
No 430
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.67 E-value=0.091 Score=50.86 Aligned_cols=236 Identities=22% Similarity=0.104 Sum_probs=115.4
Q ss_pred chhhhhccccccEEeecCCc----cccccc-------cccCCCceeEEeccCCcCcccCccc----ccCCCCcceeeccC
Q 039852 401 IPRNIEKLVHLRYLNLSGQD----IVQLSE-------TLCELYILEKLDISYCMDLEELPEG----IKKLINMRHLLNDG 465 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~----i~~lp~-------~i~~L~~L~~L~l~~c~~l~~lp~~----i~~L~~L~~L~l~~ 465 (731)
+...|.+-.+|+.-+++.-. ...+|+ .+-++++||+.+|+.|..-...|+. |.+-+.|.||.+++
T Consensus 50 l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 50 LCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred HHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence 34455566777777776532 113333 3457788888888887665566654 56677889998888
Q ss_pred Cccccccccc-cC----------CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCC-hhhhhhc
Q 039852 466 TDTLRYMVVG-IG----------RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSD-VGEAKRL 533 (731)
Q Consensus 466 ~~~~~~~p~~-i~----------~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~-~~~~~~~ 533 (731)
| .+..+..+ |+ +-.+=..|..+.+..+.-..+.....-.-+..-.+|+.+.+..-.--+. .......
T Consensus 130 n-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~ 208 (388)
T COG5238 130 N-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL 208 (388)
T ss_pred C-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH
Confidence 7 33322211 22 1111222333333332200000011111122224555555543111111 1122233
Q ss_pred cccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCccee
Q 039852 534 ELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKL 613 (731)
Q Consensus 534 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L 613 (731)
.+..+++|+.|+|..|.+.. ......-..++.-+.|+.|.+.+|.....=.... +.... =-..|+|..|
T Consensus 209 gl~y~~~LevLDlqDNtft~-------~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v---~~~f~-e~~~p~l~~L 277 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTL-------EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV---LRRFN-EKFVPNLMPL 277 (388)
T ss_pred HHHHhCcceeeeccccchhh-------hhHHHHHHHhcccchhhhccccchhhccccHHHH---HHHhh-hhcCCCcccc
Confidence 45678899999999887611 1122333556666789999999997654100000 00000 0125677777
Q ss_pred eeccccCce-EeCcccccccccccCcccceeecccc
Q 039852 614 HIWGMKRVK-KVGDEFLGVEIIIAFPKLKSLLIEDL 648 (731)
Q Consensus 614 ~L~~~~~l~-~i~~~~~~~~~~~~f~~L~~L~l~~~ 648 (731)
....+..-. .|-..+...-.....|-|..|.+.++
T Consensus 278 ~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 278 PGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 666432111 11100000000246778888877765
No 431
>PRK13695 putative NTPase; Provisional
Probab=91.66 E-value=0.18 Score=47.15 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|..|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 432
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.64 E-value=0.38 Score=54.31 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=48.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhc-ccceEEEEEeCCCCCHHHHHHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKR-EFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
-++++|.++.++.+...+... . -+-++|+.|+||||+|+.+.+ .+.. .|...+++.-+ ..+...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~-------~-~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~ 85 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK-------R-NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVE 85 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC-------C-CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHH
Confidence 346889888887777666521 2 344899999999999999997 3433 33444433322 2345566777
Q ss_pred HHHHccC
Q 039852 256 MLEALTG 262 (731)
Q Consensus 256 i~~~~~~ 262 (731)
++.+++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 7776554
No 433
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.63 E-value=0.31 Score=54.99 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=54.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHH
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAML 257 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 257 (731)
++++|.++.++.+...+... +-+-++|..|.||||+|+.+.+.. -..+|+..+|..-+ .-+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 46889888888777766521 358889999999999999998742 23346778886653 336677788877
Q ss_pred HHccC
Q 039852 258 EALTG 262 (731)
Q Consensus 258 ~~~~~ 262 (731)
.+.+.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 434
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.61 E-value=0.12 Score=47.59 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=17.5
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999973
No 435
>PRK13973 thymidylate kinase; Provisional
Probab=91.58 E-value=1.4 Score=42.58 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=31.4
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE 258 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 258 (731)
..|.|-|..|+||||+++.++..-.-+ .+.. +...-.......+.+++++.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~-g~~~-~~~~~p~~~~~g~~ir~~l~ 54 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAA-GYDV-LVTREPGGSPGAEAIRHVLL 54 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeE-EEEECCCCCchHHHHHHHHc
Confidence 578899999999999999999853222 2222 22222223334555555543
No 436
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.56 E-value=0.13 Score=46.98 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.1
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-|.++||.|+||||+.+++.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH
Confidence 477899999999999999987
No 437
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.56 E-value=0.13 Score=52.19 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|+|+|-|||||||+|-.+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 6899999999999999877666
No 438
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.55 E-value=2 Score=45.08 Aligned_cols=74 Identities=26% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCCC---CCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCH--HHHHHHHHHHcc
Q 039852 187 RNELLSKMLCESSDQ---QKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDE--FRIAKAMLEALT 261 (731)
Q Consensus 187 ~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~~~ 261 (731)
.+++++.|......- .+...||-.||.-|.||||-|-.+.+ ..+. ....+-+...+.+.+ .+-++.+..+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 466777776422211 23478999999999999999988888 3433 333333444444443 345667777766
Q ss_pred CC
Q 039852 262 GS 263 (731)
Q Consensus 262 ~~ 263 (731)
..
T Consensus 156 v~ 157 (451)
T COG0541 156 VP 157 (451)
T ss_pred Cc
Confidence 43
No 439
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.53 E-value=0.16 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.|+|+.|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 440
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.51 E-value=0.13 Score=52.10 Aligned_cols=22 Identities=45% Similarity=0.653 Sum_probs=19.8
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|+|+|-|||||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999987776
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.46 E-value=1.1 Score=43.87 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=31.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAM 256 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 256 (731)
.-.++.|.|..|.||||+|.++... -.+.. ...++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3459999999999999998555442 22222 3456665333 455666665
No 442
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=0.024 Score=52.45 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=46.4
Q ss_pred HHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccce
Q 039852 563 DQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKS 642 (731)
Q Consensus 563 ~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~ 642 (731)
....++.+..++.++.|.+.+|.- +-.|=.. .+. +-.|+|+.|+|++|+.+++-+-.. ...|++|+.
T Consensus 114 ~~eGle~L~~l~~i~~l~l~~ck~---~dD~~L~---~l~--~~~~~L~~L~lsgC~rIT~~GL~~-----L~~lknLr~ 180 (221)
T KOG3864|consen 114 MYEGLEHLRDLRSIKSLSLANCKY---FDDWCLE---RLG--GLAPSLQDLDLSGCPRITDGGLAC-----LLKLKNLRR 180 (221)
T ss_pred HHHHHHHHhccchhhhheeccccc---hhhHHHH---Hhc--ccccchheeeccCCCeechhHHHH-----HHHhhhhHH
Confidence 345566666677777777777664 4444211 111 136788888888887776544332 246777777
Q ss_pred eecccccccc
Q 039852 643 LLIEDLLELE 652 (731)
Q Consensus 643 L~l~~~~~l~ 652 (731)
|.|.+++...
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 7777775443
No 443
>PRK06620 hypothetical protein; Validated
Probab=91.43 E-value=0.14 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.+-|+|..|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998874
No 444
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.43 E-value=0.14 Score=45.57 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 48999999999999999999984
No 445
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.42 E-value=0.19 Score=52.06 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=36.4
Q ss_pred cCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 175 IDEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 175 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..-+.+||.++.+..++..+.. +.+.-|-|.|..|.||||+|+.+++
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3445799988877777766652 3455566999999999999999976
No 446
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.42 E-value=0.63 Score=43.06 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=32.0
Q ss_pred EeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH
Q 039852 208 ISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE 258 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 258 (731)
+-|.|..|.|||++|.++... .....+++.-.+.+|.+ +.+.|..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHH
Confidence 568999999999999988753 22467777777777653 4444433
No 447
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.41 E-value=0.55 Score=53.81 Aligned_cols=87 Identities=24% Similarity=0.179 Sum_probs=56.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCC-----ChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTS-----NLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 278 (731)
.-+++-|.|..|+||||||.++.-... ..=..++|+.....++.. .+++++.+.. .....++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 567889999999999999977655322 223567999888888743 5555554311 1223344555555
Q ss_pred HHhC-CCceEEEehhhHHHHH
Q 039852 279 ESIA-GKRFLLVLDDVMLVLF 298 (731)
Q Consensus 279 ~~l~-~kr~llvlDdvw~~lf 298 (731)
..++ ++--+||+|-+- .+|
T Consensus 132 ~lv~~~~~~LVVIDSI~-aL~ 151 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA-ALV 151 (790)
T ss_pred HHhhcCCCeEEEEcchh-hhc
Confidence 5554 455579999986 344
No 448
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.40 E-value=0.14 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEeeeccCcchHHHHHHHHHcch
Q 039852 207 IISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
-|.++|.+|+|||||++.+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 449
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=0.85 Score=51.58 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++++|.+..++.+..++..+. -...+-++|..|+||||+|+.+..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999987432 245688999999999999988776
No 450
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.38 E-value=0.24 Score=49.05 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHH
Q 039852 187 RNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
-.+++..+....+ +..||+|.|.+|+||+||...+-....-+++==.++=|.-|.+|+--.|+.+
T Consensus 37 a~~ll~~l~p~tG----~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTG----NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCC----CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 3566666665443 6789999999999999999888875433333222333444666665555543
No 451
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.33 E-value=0.14 Score=42.16 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=19.3
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999998874
No 452
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=91.32 E-value=0.23 Score=50.71 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=26.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF 247 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 247 (731)
++|+|+|-||+||||+|-.+..- ....=..++-|......
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~--La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHM--MAEMGKRVLQLGCDPKH 40 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEecCCC
Confidence 58999999999999999888773 32222234445544443
No 453
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.31 E-value=0.24 Score=51.31 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=34.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+||.++.+..++-.+.. +...-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~------~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID------PKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcC------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4689988888887666653 2344567999999999999999975
No 454
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.30 E-value=0.34 Score=49.75 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
....+|+|+|.+|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999998874
No 455
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.28 E-value=0.15 Score=43.83 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.6
Q ss_pred EeeeccCcchHHHHHHHHHcc
Q 039852 208 ISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~ 228 (731)
|+|+|..|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 456
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.28 E-value=1.3 Score=43.37 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=29.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET 246 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (731)
.-.++.|.|.+|.||||+|.++..+. .+ .-...+|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC
Confidence 46799999999999999998876532 22 2346778776443
No 457
>PRK04182 cytidylate kinase; Provisional
Probab=91.26 E-value=0.15 Score=47.91 Aligned_cols=22 Identities=50% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999874
No 458
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.21 E-value=0.15 Score=47.59 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++.|+|..|.||||+++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48899999999999999999984
No 459
>PRK06820 type III secretion system ATPase; Validated
Probab=91.20 E-value=1.3 Score=47.47 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=27.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET 246 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (731)
..++|+|..|+|||||++.+.... +-+..+.+-+...
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGer 200 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGER 200 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccC
Confidence 478999999999999999998742 2234444555554
No 460
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=91.19 E-value=0.16 Score=51.24 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|+|+|-||+||||+|..+...
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~~ 25 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAAA 25 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcc
Confidence 368999999999999999988874
No 461
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.11 E-value=0.49 Score=47.52 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=28.7
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHH
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIA 253 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 253 (731)
-|-+.|..|+|||++|+.+.+ ... .....++.....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 345899999999999999987 322 234455666665555544
No 462
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.10 E-value=0.17 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+...|+|+|..|+|||||.+.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456999999999999999999884
No 463
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=0.55 Score=44.93 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC
Q 039852 176 DEEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD 248 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (731)
...++-|.+-.++++.+...-.-.. +-+..+=|-.+|++|.|||.||++|.|+ ....| +.|-..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f-----irvvgs-- 223 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF-----IRVVGS-- 223 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe-----eeeccH--
Confidence 3456777776666665544211000 1224566778999999999999999995 33323 222211
Q ss_pred HHHHHHHHHHHccCCCCChhhHHHHHHHHHHHh-CCCceEEEehhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHcCC
Q 039852 249 EFRIAKAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVMLVLFKRLAFFGRSTEKCEKLEQIGQRIARKCKG 327 (731)
Q Consensus 249 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~llvlDdvw~~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~g 327 (731)
++.+.. + +..+ .+...+.+.. .+-.-.|.+|++.. .-.+ -|.... ..+.+.+.+.-+++...+|
T Consensus 224 --efvqky---l-gegp------rmvrdvfrlakenapsiifideida-iatk-rfdaqt-gadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 224 --EFVQKY---L-GEGP------RMVRDVFRLAKENAPSIIFIDEIDA-IATK-RFDAQT-GADREVQRILIELLNQMDG 288 (408)
T ss_pred --HHHHHH---h-ccCc------HHHHHHHHHHhccCCcEEEeehhhh-Hhhh-hccccc-cccHHHHHHHHHHHHhccC
Confidence 111111 1 2111 1111122222 24456677788753 1111 122111 2346677777777777777
Q ss_pred C
Q 039852 328 L 328 (731)
Q Consensus 328 l 328 (731)
.
T Consensus 289 f 289 (408)
T KOG0727|consen 289 F 289 (408)
T ss_pred c
Confidence 5
No 464
>PRK07933 thymidylate kinase; Validated
Probab=91.08 E-value=0.9 Score=43.93 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.3
Q ss_pred EEeeeccCcchHHHHHHHHHcchh
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVE 230 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~ 230 (731)
.|+|-|+-|+||||+++.+.+.-.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998533
No 465
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=91.07 E-value=2 Score=45.85 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=51.7
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCH-HHHHHHHHHHccCC-------CCChhh-----HHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDE-FRIAKAMLEALTGS-------TSNLDA-----LQS 272 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~i~~~i~~~~~~~-------~~~~~~-----~~~ 272 (731)
.-++|.|-.|+|||+|+.++.+... -+.++++-+...... .++..++...-..+ ..+... ...
T Consensus 141 QkigIF~gaGvgk~~L~~~ia~~~~----~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~ 216 (436)
T PRK02118 141 QKIPIFSVSGEPYNALLARIALQAE----ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPD 216 (436)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHhhC----CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4679999999999999999887432 256778888877654 34445444332111 111111 111
Q ss_pred HHHHHHHHhC---CCceEEEehhhH
Q 039852 273 LLISIDESIA---GKRFLLVLDDVM 294 (731)
Q Consensus 273 ~~~~l~~~l~---~kr~llvlDdvw 294 (731)
....+-++++ ++.+|+++||+-
T Consensus 217 ~AltiAEyfrd~g~~~VLli~DdlT 241 (436)
T PRK02118 217 MALAVAEKFALEGKKKVLVLLTDMT 241 (436)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCch
Confidence 2223444443 489999999984
No 466
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.99 Score=46.33 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=66.7
Q ss_pred ccccchhHHHHHHHHHhcCCC------CCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHH
Q 039852 179 EICGRVGERNELLSKMLCESS------DQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRI 252 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 252 (731)
++.|.++.++-|.+.+.-.-. +.....+-|-.+|++|.|||.||++|+..-. .-|.+||...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-------tTFFNVSsst----- 280 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-------TTFFNVSSST----- 280 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-------CeEEEechhh-----
Confidence 466766666655554432111 0123567889999999999999999999422 3344554431
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHHHhCC-CceEEEehhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHcCCC
Q 039852 253 AKAMLEALTGSTSNLDALQSLLISIDESIAG-KRFLLVLDDVMLVLFKRLAFFGRSTEKCEKLEQIGQRIARKCKGL 328 (731)
Q Consensus 253 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~llvlDdvw~~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~gl 328 (731)
+...-. .+.+.+...|.+..+- -.-.|.+|.+. .|..++ +...++..-..+-.+.+...+|+
T Consensus 281 ---ltSKwR------GeSEKlvRlLFemARfyAPStIFiDEID-slcs~R----G~s~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738|consen 281 ---LTSKWR------GESEKLVRLLFEMARFYAPSTIFIDEID-SLCSQR----GGSSEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred ---hhhhhc------cchHHHHHHHHHHHHHhCCceeehhhHH-HHHhcC----CCccchhHHHHHHHHHHHHhhcc
Confidence 011111 1123333344443321 23356677775 343333 12234555566667777777775
No 467
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.01 E-value=0.15 Score=46.05 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998874
No 468
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=18 Score=36.07 Aligned_cols=124 Identities=19% Similarity=0.302 Sum_probs=71.7
Q ss_pred CccccchhHHHHHHHHHhcCC------CCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHH
Q 039852 178 EEICGRVGERNELLSKMLCES------SDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFR 251 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 251 (731)
+++.|.+.+++.+.+.+.-.- .++....+-|-++|++|.||+.||++|..... . -|.+||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----H
Confidence 357888888888777643211 01133578899999999999999999998433 2 22334433 2
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHHHhC-CCceEEEehhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHcCCC
Q 039852 252 IAKAMLEALTGSTSNLDALQSLLISIDESIA-GKRFLLVLDDVMLVLFKRLAFFGRSTEKCEKLEQIGQRIARKCKGL 328 (731)
Q Consensus 252 i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~llvlDdvw~~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~gl 328 (731)
+....+ + ..+.+...+.+..+ +|.-.|.+|.+.. + .+.+.......-..|-.+.+-...|+
T Consensus 202 LvSKWm----G------ESEkLVknLFemARe~kPSIIFiDEiDs-l-----cg~r~enEseasRRIKTEfLVQMqGV 263 (439)
T KOG0739|consen 202 LVSKWM----G------ESEKLVKNLFEMARENKPSIIFIDEIDS-L-----CGSRSENESEASRRIKTEFLVQMQGV 263 (439)
T ss_pred HHHHHh----c------cHHHHHHHHHHHHHhcCCcEEEeehhhh-h-----ccCCCCCchHHHHHHHHHHHHhhhcc
Confidence 222222 1 23455666666654 6778888898862 2 22222223333444555555555543
No 469
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=1 Score=50.07 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=53.2
Q ss_pred CccccchhHHHHH---HHHHhcCCCC----CCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHH
Q 039852 178 EEICGRVGERNEL---LSKMLCESSD----QQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEF 250 (731)
Q Consensus 178 ~~~vGr~~~~~~l---~~~L~~~~~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (731)
.++.|.+..++.+ +++.+....- +-...+.|-++|++|.|||+||++|.+ ..+.+|-.+.+ .
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~-----~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG-----S---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC-----H----
Confidence 3566655555444 3443322210 123566899999999999999999999 34444433221 1
Q ss_pred HHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCCceEEEehhhH
Q 039852 251 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 251 ~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~llvlDdvw 294 (731)
++ +....+ .........+....+.....|.+|++.
T Consensus 311 ~l----~sk~vG-----esek~ir~~F~~A~~~~p~iiFiDEiD 345 (494)
T COG0464 311 EL----LSKWVG-----ESEKNIRELFEKARKLAPSIIFIDEID 345 (494)
T ss_pred HH----hccccc-----hHHHHHHHHHHHHHcCCCcEEEEEchh
Confidence 11 111111 111222223334445778999999986
No 470
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=90.93 E-value=0.5 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+++|+|..|+|||||++.+.+.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999998874
No 471
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=90.92 E-value=0.15 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++.|+|+|..|.||||||+++...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998873
No 472
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.92 E-value=0.17 Score=47.08 Aligned_cols=21 Identities=48% Similarity=0.699 Sum_probs=19.9
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999977
No 473
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.92 E-value=0.18 Score=47.86 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.5
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|+++|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999987766
No 474
>PRK14527 adenylate kinase; Provisional
Probab=90.90 E-value=0.18 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+..+|.|+|.+|.||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998863
No 475
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=90.87 E-value=0.92 Score=48.51 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=28.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD 248 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (731)
-..++|+|..|+|||||++.+..... -+..+.+.+.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergr 196 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGR 196 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccch
Confidence 45889999999999999999997422 23444444555443
No 476
>PRK13976 thymidylate kinase; Provisional
Probab=90.85 E-value=1 Score=43.42 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|+|-|..|+||||+++.+++.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~ 23 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEY 23 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999984
No 477
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.84 E-value=0.65 Score=43.03 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=42.5
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhH---HHHHHHHHHHhCC
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSNLDAL---QSLLISIDESIAG 283 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~---~~~~~~l~~~l~~ 283 (731)
+|.|.|..|.||||+|..+.... . ...+++.-...++. +..+.|.............. ..+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68899999999999999887631 1 12344444444443 44455443322211111111 1223334333333
Q ss_pred CceEEEehhhH
Q 039852 284 KRFLLVLDDVM 294 (731)
Q Consensus 284 kr~llvlDdvw 294 (731)
.. ++++|.+-
T Consensus 77 ~~-~VlID~Lt 86 (170)
T PRK05800 77 GR-CVLVDCLT 86 (170)
T ss_pred CC-EEEehhHH
Confidence 23 68888884
No 478
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=90.83 E-value=0.45 Score=49.63 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=46.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHH
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
.++|.++.+..+...+..+ +-+-+.|..|+|||+||+.+.. ... -...++.......+.++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCc
Confidence 3788888888877777643 3467899999999999999998 333 34555666777776665543
No 479
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.82 E-value=0.16 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.|.|+|+.|.||||+|+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35888999999999999999873
No 480
>PLN02200 adenylate kinase family protein
Probab=90.80 E-value=0.2 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|.|+|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 481
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.79 E-value=0.91 Score=48.45 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=48.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC-CHHHHHHHHHHHccCC-------CCChhh-----H
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF-DEFRIAKAMLEALTGS-------TSNLDA-----L 270 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~-------~~~~~~-----~ 270 (731)
.-..++|+|..|+|||||++.+.+.... +..+.+-+.+.. ...++..+.+.+-+.. ..+... .
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 3468999999999999999988874322 222323344433 3344444444321110 111111 1
Q ss_pred HHHHHHHHHHh--CCCceEEEehhhH
Q 039852 271 QSLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
......+-+++ +|+.+|+++||+-
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 11222334444 4899999999984
No 482
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.75 E-value=0.27 Score=55.22 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHH
Confidence 478998888888888886432 235688999999999999988776
No 483
>PRK04328 hypothetical protein; Provisional
Probab=90.75 E-value=1.1 Score=44.59 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=30.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF 247 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 247 (731)
.-.++-|.|.+|.|||+||.++..+ ..+ .-...+|++....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~~-~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GLQ-MGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHh-cCCcEEEEEeeCCH
Confidence 4679999999999999999886553 222 23567888876643
No 484
>PRK05636 replicative DNA helicase; Provisional
Probab=90.74 E-value=13 Score=41.09 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=39.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALT 261 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~ 261 (731)
.-.+|.|-|.+|+||||+|..+..+..++.... ++ .+|-..+..++...++....
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~-v~--~fSlEMs~~ql~~R~ls~~s 318 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKA-SV--IFSLEMSKSEIVMRLLSAEA 318 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCe-EE--EEEeeCCHHHHHHHHHHHhc
Confidence 455888899999999999998887544443332 22 23777788888888877654
No 485
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.70 E-value=0.36 Score=50.52 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=39.1
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+++|.++....+...+..+. -...+-|+|..|+||||+|..+.+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHH
Confidence 44579999999999999887443 3457889999999999999988773
No 486
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=90.67 E-value=1.4 Score=47.77 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=51.9
Q ss_pred EEEeeeccCcchHHHHH-HHHHcchhhhcccce-EEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhhHH----
Q 039852 206 HIISIVGMGGIGKTTLA-QLASNHVEVKREFHK-ILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDALQ---- 271 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~~~---- 271 (731)
..++|.|-.|+|||||| .++.+.. .-+. ++++-+.+... +.++...+...-... ..+.....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 47899999999999996 5777742 3354 67788887754 445665555432111 11111111
Q ss_pred -HHHHHHHHHh--CCCceEEEehhhH
Q 039852 272 -SLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 272 -~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
.....+-+++ +|+.+|+|+||+-
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlT 264 (497)
T TIGR03324 239 PYAATSIGEHFMEQGRDVLIVYDDLT 264 (497)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcChh
Confidence 1122244444 5899999999984
No 487
>PLN02165 adenylate isopentenyltransferase
Probab=90.65 E-value=0.19 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++|.|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4559999999999999999998874
No 488
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.65 E-value=1.3 Score=51.87 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=35.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.++.|.+..++.+.+.+.-.-.. +-...+-|-++|..|.|||++|+++.+.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 346788887777776655311000 0123455788999999999999999984
No 489
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.64 E-value=0.64 Score=48.00 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 188 NELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++++.+.... .+..+|+|.|..|+|||||+..+...
T Consensus 43 ~~l~~~~~~~~----~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 43 QELLDALLPHT----GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHhhcC----CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44555554322 35789999999999999999988773
No 490
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=90.64 E-value=0.31 Score=51.70 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=25.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccce
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHK 237 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~ 237 (731)
+--||+|+|..|+|||||+..+.. ..+..+..
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~~~V 35 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR--RLSERFSV 35 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH--HHhhCceE
Confidence 456999999999999999999998 44444433
No 491
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.62 E-value=0.17 Score=46.70 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.6
Q ss_pred EeeeccCcchHHHHHHHHHcch
Q 039852 208 ISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~~ 229 (731)
|.|.|..|+|||||++.+.+.-
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6789999999999999999743
No 492
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.53 E-value=0.19 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 493
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.52 E-value=0.22 Score=45.71 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+|+++|..|+||||+++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 494
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.48 E-value=0.19 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998875
No 495
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=90.48 E-value=1.7 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=21.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..-+|+|.|..|.|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999965
No 496
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.39 E-value=0.2 Score=50.69 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.2
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+|++.|-||+||||+|-.+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 588889999999998877666
No 497
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.38 E-value=0.18 Score=44.16 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..=|-|.|.+|+||||+|..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 44578999999999999999986
No 498
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.33 E-value=0.21 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999864
No 499
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.31 E-value=0.2 Score=46.15 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.5
Q ss_pred EeeeccCcchHHHHHHHHHcch
Q 039852 208 ISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 208 i~I~G~gGvGKTtLa~~v~~~~ 229 (731)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999988753
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.28 E-value=0.21 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999984
Done!