Query 039852
Match_columns 731
No_of_seqs 438 out of 3491
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.5E-30 2.6E-34 284.2 15.9 203 181-393 131-401 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.1E-23 3.8E-28 237.1 12.9 199 179-393 129-383 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-23 5.1E-28 258.9 10.5 207 176-393 122-391 (1249)
4 4fcg_A Uncharacterized protein 99.9 1.6E-21 5.6E-26 202.8 15.0 231 408-703 80-310 (328)
5 3rgz_A Protein brassinosteroid 99.9 9.5E-22 3.3E-26 228.9 12.0 293 401-729 384-766 (768)
6 1z6t_A APAF-1, apoptotic prote 99.8 4.6E-21 1.6E-25 216.7 13.6 205 177-393 123-391 (591)
7 4ecn_A Leucine-rich repeat pro 99.8 4.5E-21 1.6E-25 221.8 10.3 270 401-705 440-787 (876)
8 4eco_A Uncharacterized protein 99.8 4.9E-21 1.7E-25 217.7 8.1 265 401-705 198-547 (636)
9 2id5_A Lingo-1, leucine rich r 99.8 3.6E-20 1.2E-24 203.9 12.5 260 402-705 49-331 (477)
10 3o6n_A APL1; leucine-rich repe 99.8 5.4E-20 1.9E-24 196.8 12.2 267 400-705 59-350 (390)
11 4fcg_A Uncharacterized protein 99.8 1.5E-19 5.2E-24 187.9 11.6 217 399-679 94-310 (328)
12 2id5_A Lingo-1, leucine rich r 99.8 4.3E-19 1.5E-23 195.3 15.9 263 399-705 24-307 (477)
13 3oja_B Anopheles plasmodium-re 99.8 1.6E-19 5.5E-24 204.1 12.3 268 400-706 65-357 (597)
14 4ecn_A Leucine-rich repeat pro 99.8 4.7E-19 1.6E-23 205.0 14.9 263 400-706 532-839 (876)
15 3v47_A TOLL-like receptor 5B a 99.8 8.6E-19 2.9E-23 191.8 16.1 275 402-705 47-406 (455)
16 3rgz_A Protein brassinosteroid 99.8 2.2E-19 7.7E-24 208.9 12.0 276 400-705 309-691 (768)
17 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-20 9.9E-25 192.2 3.9 249 409-707 50-304 (313)
18 4fmz_A Internalin; leucine ric 99.8 8.4E-19 2.9E-23 184.5 14.2 243 405-705 62-322 (347)
19 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-19 4.8E-24 187.0 7.8 240 400-688 67-309 (313)
20 4eco_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 202.4 11.3 253 400-705 319-598 (636)
21 4fmz_A Internalin; leucine ric 99.8 9.6E-19 3.3E-23 184.0 13.7 239 405-705 106-344 (347)
22 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-18 7.1E-23 192.1 16.9 98 367-466 23-125 (520)
23 3t6q_A CD180 antigen; protein- 99.8 1.7E-18 5.8E-23 196.7 12.6 269 402-705 271-558 (606)
24 3o6n_A APL1; leucine-rich repe 99.8 3.3E-18 1.1E-22 183.0 14.0 230 401-681 85-350 (390)
25 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-18 4.5E-23 197.6 11.5 87 402-489 73-162 (606)
26 3qfl_A MLA10; coiled-coil, (CC 99.8 2.5E-19 8.6E-24 152.3 3.7 81 4-88 1-83 (115)
27 3v47_A TOLL-like receptor 5B a 99.8 2.6E-18 8.8E-23 187.9 12.6 278 399-705 23-382 (455)
28 2z80_A TOLL-like receptor 2, v 99.7 2E-18 6.9E-23 181.9 10.6 266 398-705 43-312 (353)
29 3oja_B Anopheles plasmodium-re 99.7 3.8E-18 1.3E-22 192.8 13.6 231 400-681 90-356 (597)
30 1xku_A Decorin; proteoglycan, 99.7 1E-17 3.4E-22 174.8 15.4 252 400-706 45-305 (330)
31 2ft3_A Biglycan; proteoglycan, 99.7 4.5E-18 1.5E-22 177.6 12.0 243 409-705 54-305 (332)
32 1o6v_A Internalin A; bacterial 99.7 1E-17 3.5E-22 183.5 15.4 245 405-705 86-342 (466)
33 3j0a_A TOLL-like receptor 5; m 99.7 2.1E-17 7.2E-22 194.3 18.5 114 401-520 40-157 (844)
34 2z81_A CD282 antigen, TOLL-lik 99.7 5.4E-18 1.8E-22 190.1 12.7 88 402-491 43-134 (549)
35 1o6v_A Internalin A; bacterial 99.7 1.4E-17 4.7E-22 182.4 15.6 255 399-705 103-386 (466)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 9.6E-18 3.3E-22 188.4 13.9 139 536-705 350-508 (562)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.6E-17 5.5E-22 186.5 15.2 87 401-491 68-157 (562)
38 3bz5_A Internalin-J, INLJ; leu 99.7 1.6E-17 5.4E-22 180.6 14.2 251 404-707 59-320 (457)
39 1xku_A Decorin; proteoglycan, 99.7 3.5E-17 1.2E-21 170.7 16.3 244 407-705 29-274 (330)
40 2ft3_A Biglycan; proteoglycan, 99.7 2.2E-17 7.6E-22 172.3 14.2 241 409-705 33-275 (332)
41 3t6q_A CD180 antigen; protein- 99.7 2.6E-17 9E-22 186.9 15.6 253 410-704 255-510 (606)
42 2z7x_B TOLL-like receptor 1, v 99.7 3.3E-17 1.1E-21 182.4 15.6 92 398-492 34-127 (520)
43 2z81_A CD282 antigen, TOLL-lik 99.7 1.5E-17 5.2E-22 186.4 12.5 145 537-705 332-508 (549)
44 3vq2_A TLR4, TOLL-like recepto 99.7 9.8E-18 3.4E-22 190.4 8.8 255 405-706 281-557 (606)
45 2z66_A Variable lymphocyte rec 99.7 2.7E-17 9.2E-22 169.6 10.3 234 399-705 20-259 (306)
46 3zyi_A Leucine-rich repeat-con 99.7 1.5E-16 5.2E-21 173.4 16.8 231 399-705 67-301 (452)
47 1ziw_A TOLL-like receptor 3; i 99.7 2.9E-17 9.9E-22 189.2 11.6 96 603-705 267-364 (680)
48 3zyj_A Leucine-rich repeat-con 99.7 7.7E-17 2.6E-21 175.1 14.2 88 399-490 56-146 (440)
49 3zyi_A Leucine-rich repeat-con 99.7 5.7E-17 2E-21 176.8 13.2 211 398-649 88-301 (452)
50 3bz5_A Internalin-J, INLJ; leu 99.7 1.8E-16 6.3E-21 172.2 17.1 250 405-705 81-350 (457)
51 2z66_A Variable lymphocyte rec 99.7 2.3E-17 7.8E-22 170.1 9.5 89 398-488 40-134 (306)
52 3j0a_A TOLL-like receptor 5; m 99.7 9.6E-17 3.3E-21 188.7 15.8 274 399-705 17-373 (844)
53 3zyj_A Leucine-rich repeat-con 99.7 1.7E-16 5.9E-21 172.3 16.6 244 410-705 44-290 (440)
54 2z63_A TOLL-like receptor 4, v 99.7 4E-17 1.4E-21 183.9 11.9 87 402-489 69-158 (570)
55 3o53_A Protein LRIM1, AGAP0063 99.7 3.5E-18 1.2E-22 177.0 0.0 243 406-708 31-276 (317)
56 3oja_A Leucine-rich immune mol 99.7 7.6E-18 2.6E-22 184.8 1.8 241 401-701 22-269 (487)
57 2z63_A TOLL-like receptor 4, v 99.7 1.6E-16 5.4E-21 179.1 11.9 257 398-705 271-529 (570)
58 2z80_A TOLL-like receptor 2, v 99.7 1E-16 3.5E-21 168.8 9.6 239 400-682 66-313 (353)
59 1ziw_A TOLL-like receptor 3; i 99.7 5.2E-16 1.8E-20 178.7 15.8 258 403-705 43-340 (680)
60 1wwl_A Monocyte differentiatio 99.7 2.3E-17 7.9E-22 170.4 4.0 252 404-705 38-307 (312)
61 1ozn_A Reticulon 4 receptor; N 99.7 4.5E-17 1.5E-21 166.0 5.8 209 400-649 25-236 (285)
62 3g06_A SSPH2 (leucine-rich rep 99.6 7.8E-16 2.7E-20 172.3 14.4 235 399-706 53-296 (622)
63 4g8a_A TOLL-like receptor 4; l 99.6 1.8E-15 6.3E-20 172.7 16.8 85 403-489 70-157 (635)
64 3o53_A Protein LRIM1, AGAP0063 99.6 3.9E-17 1.3E-21 169.1 2.4 285 369-711 14-303 (317)
65 4ay9_X Follicle-stimulating ho 99.6 2.2E-15 7.5E-20 158.2 12.2 102 574-703 154-255 (350)
66 1ozn_A Reticulon 4 receptor; N 99.6 3.7E-15 1.3E-19 151.8 12.6 220 412-705 14-236 (285)
67 1jl5_A Outer protein YOPM; leu 99.6 2.2E-15 7.5E-20 163.6 11.4 171 412-625 74-253 (454)
68 2xwt_C Thyrotropin receptor; s 99.6 8.4E-15 2.9E-19 144.9 14.7 199 410-707 32-239 (239)
69 1wwl_A Monocyte differentiatio 99.6 5.7E-16 1.9E-20 159.9 6.4 226 411-681 65-307 (312)
70 1jl5_A Outer protein YOPM; leu 99.6 7.4E-16 2.5E-20 167.2 7.3 167 399-618 24-205 (454)
71 3oja_A Leucine-rich immune mol 99.6 1.7E-15 5.8E-20 166.1 10.0 226 422-707 20-250 (487)
72 1p9a_G Platelet glycoprotein I 99.6 2.7E-14 9.3E-19 145.3 15.3 200 405-705 6-206 (290)
73 2ast_B S-phase kinase-associat 99.5 7.2E-16 2.5E-20 161.2 1.3 212 405-648 64-282 (336)
74 1h6u_A Internalin H; cell adhe 99.5 1.6E-14 5.6E-19 148.5 10.7 191 405-648 37-227 (308)
75 2o6q_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 143.4 12.4 76 410-489 17-94 (270)
76 2ast_B S-phase kinase-associat 99.5 9.3E-16 3.2E-20 160.3 -0.2 253 410-712 48-310 (336)
77 2z62_A TOLL-like receptor 4, v 99.5 4.7E-14 1.6E-18 142.8 11.5 84 400-487 21-107 (276)
78 3g06_A SSPH2 (leucine-rich rep 99.5 2.3E-13 7.7E-18 152.4 16.9 224 409-705 40-272 (622)
79 2z62_A TOLL-like receptor 4, v 99.5 2E-14 6.8E-19 145.6 6.8 222 413-682 11-236 (276)
80 3rfs_A Internalin B, repeat mo 99.5 1.9E-14 6.4E-19 145.3 6.0 211 404-695 36-247 (272)
81 4ay9_X Follicle-stimulating ho 99.5 5.9E-14 2E-18 147.2 10.0 230 399-679 22-255 (350)
82 2o6q_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 139.6 11.3 184 400-649 30-216 (270)
83 3rfs_A Internalin B, repeat mo 99.5 1E-13 3.4E-18 140.0 10.6 181 403-655 57-239 (272)
84 2ca6_A RAN GTPase-activating p 99.4 5.6E-15 1.9E-19 157.5 -0.8 199 400-619 23-255 (386)
85 1h6u_A Internalin H; cell adhe 99.4 1.8E-13 6.1E-18 140.7 10.5 180 400-626 55-234 (308)
86 3ogk_B Coronatine-insensitive 99.4 3E-14 1E-18 161.2 2.5 81 406-487 161-250 (592)
87 2ca6_A RAN GTPase-activating p 99.4 4.6E-15 1.6E-19 158.2 -5.1 268 409-705 9-314 (386)
88 1z7x_W Ribonuclease inhibitor; 99.4 4.3E-15 1.5E-19 162.5 -5.7 91 608-705 313-409 (461)
89 3ogk_B Coronatine-insensitive 99.4 3.6E-14 1.2E-18 160.6 1.3 264 401-705 235-524 (592)
90 1p9a_G Platelet glycoprotein I 99.4 5.8E-13 2E-17 135.5 10.0 136 400-551 24-160 (290)
91 4glp_A Monocyte differentiatio 99.4 4.8E-13 1.6E-17 137.8 9.5 36 431-466 90-127 (310)
92 1z7x_W Ribonuclease inhibitor; 99.4 5.7E-15 2E-19 161.6 -6.5 281 400-705 47-352 (461)
93 1h6t_A Internalin B; cell adhe 99.4 7E-13 2.4E-17 135.0 9.4 170 405-619 42-211 (291)
94 1m9s_A Internalin B; cell inva 99.4 6.9E-13 2.4E-17 148.3 9.4 170 405-619 39-208 (605)
95 2xwt_C Thyrotropin receptor; s 99.4 2.7E-13 9.2E-18 134.0 5.3 184 400-650 45-238 (239)
96 4glp_A Monocyte differentiatio 99.4 4.9E-13 1.7E-17 137.7 7.0 208 407-681 89-305 (310)
97 3goz_A Leucine-rich repeat-con 99.4 7.6E-14 2.6E-18 147.2 0.3 88 400-488 13-117 (362)
98 3m19_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 126.6 10.7 76 409-488 14-91 (251)
99 4ezg_A Putative uncharacterize 99.3 2.5E-12 8.4E-17 122.8 7.1 83 404-489 39-121 (197)
100 2p1m_B Transport inhibitor res 99.3 2.4E-13 8E-18 153.9 -2.6 38 668-706 479-518 (594)
101 3m19_A Variable lymphocyte rec 99.3 6.6E-12 2.3E-16 124.9 8.2 88 399-490 27-117 (251)
102 3cvr_A Invasion plasmid antige 99.3 1.2E-11 4.2E-16 136.6 10.7 182 410-649 60-241 (571)
103 2p1m_B Transport inhibitor res 99.2 5.4E-13 1.9E-17 150.9 -1.1 38 537-584 287-324 (594)
104 1h6t_A Internalin B; cell adhe 99.2 2.3E-11 7.8E-16 123.8 10.5 155 404-592 63-217 (291)
105 1xeu_A Internalin C; cellular 99.2 2.7E-11 9.3E-16 121.1 9.4 105 400-520 33-137 (263)
106 1m9s_A Internalin B; cell inva 99.2 2.3E-11 7.9E-16 136.0 9.6 158 400-592 57-214 (605)
107 4g8a_A TOLL-like receptor 4; l 99.2 5.1E-11 1.7E-15 135.7 10.7 251 404-705 323-578 (635)
108 2o6s_A Variable lymphocyte rec 99.2 2.1E-11 7.1E-16 117.5 6.2 87 400-490 21-110 (208)
109 1xeu_A Internalin C; cellular 99.1 1.5E-11 5E-16 123.1 4.1 167 407-619 17-183 (263)
110 4ezg_A Putative uncharacterize 99.1 2E-10 6.7E-15 109.5 8.8 110 400-520 58-168 (197)
111 1dce_A Protein (RAB geranylger 99.1 8.2E-13 2.8E-17 146.8 -9.6 206 406-677 346-567 (567)
112 2v9t_B SLIT homolog 2 protein 99.1 2.3E-10 7.9E-15 111.0 8.3 85 400-488 25-112 (220)
113 3cvr_A Invasion plasmid antige 99.1 1.3E-10 4.4E-15 128.4 7.3 170 400-625 73-247 (571)
114 2o6s_A Variable lymphocyte rec 99.0 1.8E-10 6.1E-15 110.9 6.6 74 411-488 9-84 (208)
115 2v9t_B SLIT homolog 2 protein 99.0 3.6E-10 1.2E-14 109.7 7.0 149 411-619 13-163 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.0 3.6E-10 1.2E-14 109.6 6.7 149 411-619 13-164 (220)
117 4b8c_D Glucose-repressible alc 99.0 1E-10 3.5E-15 134.1 3.2 111 400-520 215-325 (727)
118 3e6j_A Variable lymphocyte rec 99.0 6E-10 2E-14 108.9 8.2 138 400-588 33-173 (229)
119 3sb4_A Hypothetical leucine ri 99.0 1.9E-09 6.6E-14 111.7 12.4 245 408-700 48-327 (329)
120 3goz_A Leucine-rich repeat-con 99.0 5.8E-11 2E-15 125.0 0.8 227 403-648 44-294 (362)
121 2ell_A Acidic leucine-rich nuc 98.9 6.6E-10 2.3E-14 102.8 6.2 81 407-490 22-105 (168)
122 3e6j_A Variable lymphocyte rec 98.9 1.2E-09 4.2E-14 106.6 7.6 150 410-619 20-170 (229)
123 2v70_A SLIT-2, SLIT homolog 2 98.9 1.9E-09 6.6E-14 104.5 8.2 87 400-490 25-115 (220)
124 2xot_A Amphoterin-induced prot 98.9 2E-09 6.7E-14 113.2 8.6 55 411-466 41-98 (361)
125 2xot_A Amphoterin-induced prot 98.9 4.9E-10 1.7E-14 117.8 3.2 176 411-619 20-200 (361)
126 2je0_A Acidic leucine-rich nuc 98.9 8.6E-10 2.9E-14 99.8 3.7 80 407-489 15-97 (149)
127 1ds9_A Outer arm dynein; leuci 98.9 6.3E-11 2.2E-15 113.1 -4.3 90 398-491 37-126 (198)
128 1a9n_A U2A', U2A'; complex (nu 98.8 2.4E-09 8.3E-14 99.8 5.3 137 404-551 14-152 (176)
129 2ell_A Acidic leucine-rich nuc 98.8 3.1E-09 1.1E-13 98.2 5.9 88 400-489 40-129 (168)
130 2je0_A Acidic leucine-rich nuc 98.8 1.8E-09 6E-14 97.7 3.8 89 400-490 33-123 (149)
131 1w8a_A SLIT protein; signaling 98.8 5.7E-09 2E-13 98.8 7.5 74 412-489 11-87 (192)
132 1w5s_A Origin recognition comp 98.8 1.2E-08 4E-13 109.5 10.8 119 177-295 21-149 (412)
133 1dce_A Protein (RAB geranylger 98.8 5.3E-09 1.8E-13 116.2 6.9 100 410-520 442-542 (567)
134 2wfh_A SLIT homolog 2 protein 98.8 1.3E-08 4.5E-13 96.2 8.5 73 412-488 13-86 (193)
135 4b8c_D Glucose-repressible alc 98.7 3E-09 1E-13 122.0 3.4 118 419-551 211-328 (727)
136 2wfh_A SLIT homolog 2 protein 98.7 2.3E-08 8E-13 94.5 8.8 86 399-488 23-110 (193)
137 1w8a_A SLIT protein; signaling 98.7 1.9E-08 6.5E-13 95.1 8.0 87 399-489 21-111 (192)
138 3sb4_A Hypothetical leucine ri 98.6 2.2E-08 7.4E-13 103.7 6.1 80 607-703 225-306 (329)
139 2r9u_A Variable lymphocyte rec 98.6 5.5E-08 1.9E-12 90.2 6.5 87 399-489 25-114 (174)
140 1ds9_A Outer arm dynein; leuci 98.6 8.1E-10 2.8E-14 105.3 -6.6 148 411-614 25-180 (198)
141 1a9n_A U2A', U2A'; complex (nu 98.6 3.6E-08 1.2E-12 91.8 4.4 109 405-520 37-149 (176)
142 2o6r_A Variable lymphocyte rec 98.5 1.9E-07 6.5E-12 86.9 8.4 74 410-487 8-83 (177)
143 3g39_A Variable lymphocyte rec 98.5 1.1E-07 3.8E-12 87.8 6.5 85 401-489 24-111 (170)
144 2qby_B CDC6 homolog 3, cell di 98.5 1.8E-07 6.2E-12 99.1 8.7 116 178-295 20-144 (384)
145 2v1u_A Cell division control p 98.4 7.3E-07 2.5E-11 94.4 11.6 117 177-295 18-141 (387)
146 4fdw_A Leucine rich hypothetic 98.4 4.7E-06 1.6E-10 88.1 17.4 256 404-722 131-394 (401)
147 2qby_A CDC6 homolog 1, cell di 98.4 3.9E-07 1.3E-11 96.5 8.5 115 177-295 19-139 (386)
148 2o6r_A Variable lymphocyte rec 98.4 5.9E-07 2E-11 83.5 8.6 85 400-488 21-108 (177)
149 2r9u_A Variable lymphocyte rec 98.4 5.4E-07 1.9E-11 83.4 7.8 75 411-489 14-90 (174)
150 1fnn_A CDC6P, cell division co 98.4 1.3E-06 4.4E-11 92.6 11.7 116 178-295 17-136 (389)
151 3g39_A Variable lymphocyte rec 98.4 6.1E-07 2.1E-11 82.8 7.8 76 410-489 10-87 (170)
152 2qen_A Walker-type ATPase; unk 98.4 3.7E-07 1.3E-11 95.2 6.6 104 176-294 10-138 (350)
153 2ifg_A High affinity nerve gro 98.3 6.1E-07 2.1E-11 93.5 6.8 91 398-491 21-114 (347)
154 2fna_A Conserved hypothetical 98.2 3.2E-06 1.1E-10 88.3 8.6 68 176-258 11-83 (357)
155 1njg_A DNA polymerase III subu 98.1 1.4E-05 4.7E-10 78.3 12.0 47 178-229 23-69 (250)
156 3te6_A Regulatory protein SIR3 98.1 5.1E-06 1.8E-10 83.8 7.7 113 179-294 21-142 (318)
157 4fdw_A Leucine rich hypothetic 98.1 1.9E-05 6.5E-10 83.5 12.1 219 410-679 158-379 (401)
158 2ra8_A Uncharacterized protein 98.0 1.6E-06 5.5E-11 90.0 2.8 85 400-487 130-226 (362)
159 3e4g_A ATP synthase subunit S, 98.0 1.4E-06 4.7E-11 79.4 1.9 71 636-709 83-154 (176)
160 3e4g_A ATP synthase subunit S, 98.0 5.8E-07 2E-11 81.8 -0.7 96 573-686 60-155 (176)
161 1jbk_A CLPB protein; beta barr 97.9 3.3E-05 1.1E-09 72.3 10.3 45 178-228 22-66 (195)
162 2ifg_A High affinity nerve gro 97.9 9.9E-06 3.4E-10 84.2 7.1 79 412-492 11-92 (347)
163 3un9_A NLR family member X1; l 97.8 8.9E-07 3E-11 92.8 -3.9 59 408-466 71-136 (372)
164 2chg_A Replication factor C sm 97.7 0.0001 3.6E-09 70.7 10.1 46 177-228 16-61 (226)
165 2p65_A Hypothetical protein PF 97.7 7E-05 2.4E-09 69.7 8.3 45 178-228 22-66 (187)
166 1sxj_B Activator 1 37 kDa subu 97.7 0.00013 4.5E-09 74.7 10.1 45 178-228 21-65 (323)
167 2ra8_A Uncharacterized protein 97.6 2.9E-05 9.9E-10 80.6 3.8 43 424-466 131-182 (362)
168 3un9_A NLR family member X1; l 97.6 5.3E-06 1.8E-10 86.8 -2.3 103 367-487 74-190 (372)
169 3rw6_A Nuclear RNA export fact 97.3 0.00018 6.1E-09 70.7 4.7 84 405-490 166-261 (267)
170 4fs7_A Uncharacterized protein 97.3 0.0011 3.8E-08 69.9 11.3 81 604-702 293-374 (394)
171 2w58_A DNAI, primosome compone 97.1 0.0008 2.7E-08 63.5 6.9 55 185-243 36-90 (202)
172 1iqp_A RFCS; clamp loader, ext 97.0 0.00074 2.5E-08 69.1 6.7 46 177-228 24-69 (327)
173 3h4m_A Proteasome-activating n 97.0 0.001 3.5E-08 66.7 6.9 53 176-228 15-74 (285)
174 4fs7_A Uncharacterized protein 96.9 0.0065 2.2E-07 63.9 12.8 101 570-699 293-393 (394)
175 3ec2_A DNA replication protein 96.9 0.0015 5E-08 60.4 6.9 43 184-229 20-62 (180)
176 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0013 4.4E-08 64.9 6.8 52 177-228 5-62 (262)
177 1io0_A Tropomodulin; LRR prote 96.6 0.00046 1.6E-08 64.1 0.9 63 403-466 30-103 (185)
178 3rw6_A Nuclear RNA export fact 96.6 0.00023 7.9E-09 69.9 -1.4 80 405-487 137-227 (267)
179 1hqc_A RUVB; extended AAA-ATPa 96.5 0.0016 5.5E-08 66.6 4.6 51 177-228 11-61 (324)
180 1sxj_A Activator 1 95 kDa subu 96.5 0.0025 8.4E-08 69.7 5.9 52 177-228 38-100 (516)
181 3b9p_A CG5977-PA, isoform A; A 96.5 0.01 3.5E-07 59.7 10.2 52 177-228 20-77 (297)
182 1d2n_A N-ethylmaleimide-sensit 96.4 0.0072 2.4E-07 59.9 8.7 47 179-228 34-87 (272)
183 4gt6_A Cell surface protein; l 96.4 0.066 2.2E-06 56.1 16.6 86 604-707 284-370 (394)
184 3pvs_A Replication-associated 96.4 0.006 2.1E-07 65.0 8.3 46 177-228 25-73 (447)
185 3d8b_A Fidgetin-like protein 1 96.4 0.0087 3E-07 61.9 9.3 52 177-228 83-140 (357)
186 3pfi_A Holliday junction ATP-d 96.4 0.0039 1.3E-07 64.1 6.7 51 177-228 28-78 (338)
187 3uk6_A RUVB-like 2; hexameric 96.3 0.015 5.1E-07 60.5 10.7 48 177-228 43-93 (368)
188 1qvr_A CLPB protein; coiled co 96.3 0.0058 2E-07 71.2 8.0 45 178-228 170-214 (854)
189 3syl_A Protein CBBX; photosynt 96.3 0.0083 2.8E-07 60.7 8.2 51 179-229 32-91 (309)
190 2chq_A Replication factor C sm 96.3 0.0034 1.2E-07 63.9 5.2 45 178-228 17-61 (319)
191 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0016 5.5E-08 64.9 2.6 68 205-294 123-192 (331)
192 3u61_B DNA polymerase accessor 96.2 0.0096 3.3E-07 60.7 8.6 47 177-228 25-71 (324)
193 2cvh_A DNA repair and recombin 96.2 0.017 5.7E-07 55.0 9.8 84 204-293 19-114 (220)
194 3eie_A Vacuolar protein sortin 96.2 0.0087 3E-07 60.9 8.1 52 177-228 17-74 (322)
195 3cf0_A Transitional endoplasmi 96.2 0.012 4.1E-07 59.3 8.9 52 177-228 14-72 (301)
196 1sxj_D Activator 1 41 kDa subu 96.2 0.0062 2.1E-07 62.9 6.9 46 177-228 36-81 (353)
197 3n70_A Transport activator; si 96.2 0.0027 9.3E-08 56.2 3.5 46 179-228 2-47 (145)
198 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.022 7.4E-07 57.9 10.6 52 177-228 11-68 (322)
199 1lv7_A FTSH; alpha/beta domain 96.1 0.012 4.1E-07 57.7 8.1 52 177-228 11-68 (257)
200 1r6b_X CLPA protein; AAA+, N-t 96.0 0.021 7.3E-07 65.7 10.5 45 178-228 186-230 (758)
201 2z4s_A Chromosomal replication 95.9 0.019 6.5E-07 61.1 9.2 73 205-294 130-204 (440)
202 4fcw_A Chaperone protein CLPB; 95.9 0.011 3.8E-07 59.8 7.0 50 179-228 18-70 (311)
203 2kjq_A DNAA-related protein; s 95.9 0.004 1.4E-07 55.3 3.2 38 206-245 37-74 (149)
204 1io0_A Tropomodulin; LRR prote 95.9 0.0018 6E-08 60.1 0.9 83 367-466 38-133 (185)
205 3vfd_A Spastin; ATPase, microt 95.9 0.017 5.7E-07 60.6 8.3 52 177-228 114-171 (389)
206 4gt6_A Cell surface protein; l 95.7 0.07 2.4E-06 55.9 12.5 127 534-702 260-386 (394)
207 1l8q_A Chromosomal replication 95.7 0.035 1.2E-06 56.5 9.8 24 205-228 37-60 (324)
208 2qp9_X Vacuolar protein sortin 95.6 0.015 5.2E-07 60.0 6.7 52 177-228 50-107 (355)
209 3bos_A Putative DNA replicatio 95.6 0.017 5.9E-07 55.7 6.7 60 178-245 28-90 (242)
210 3pxg_A Negative regulator of g 95.6 0.0084 2.9E-07 64.5 4.7 45 178-228 180-224 (468)
211 1n0w_A DNA repair protein RAD5 95.5 0.042 1.4E-06 53.1 9.2 90 204-294 23-129 (243)
212 3co5_A Putative two-component 95.4 0.0035 1.2E-07 55.3 0.8 47 178-228 4-50 (143)
213 1rz3_A Hypothetical protein rb 95.4 0.014 4.9E-07 54.7 5.1 42 183-227 3-44 (201)
214 2ce7_A Cell division protein F 95.4 0.047 1.6E-06 58.3 9.6 98 177-294 15-118 (476)
215 2zan_A Vacuolar protein sortin 95.4 0.04 1.4E-06 58.7 9.1 52 177-228 133-190 (444)
216 1jr3_A DNA polymerase III subu 95.3 0.013 4.4E-07 61.0 4.8 46 178-228 16-61 (373)
217 3hu3_A Transitional endoplasmi 95.1 0.041 1.4E-06 59.1 8.3 51 178-228 204-261 (489)
218 2z43_A DNA repair and recombin 95.1 0.064 2.2E-06 54.4 9.3 90 204-294 106-213 (324)
219 1v5w_A DMC1, meiotic recombina 95.1 0.08 2.7E-06 54.2 10.0 90 204-294 121-229 (343)
220 2px0_A Flagellar biosynthesis 95.1 0.044 1.5E-06 54.7 7.8 25 204-228 104-128 (296)
221 3hr8_A Protein RECA; alpha and 95.0 0.046 1.6E-06 55.8 7.9 84 204-294 60-149 (356)
222 4b4t_J 26S protease regulatory 95.0 0.064 2.2E-06 55.4 8.9 53 176-228 146-205 (405)
223 4h09_A Hypothetical leucine ri 95.0 0.13 4.6E-06 53.3 11.7 58 404-465 64-122 (379)
224 4b4t_L 26S protease subunit RP 95.0 0.086 2.9E-06 55.3 9.9 54 175-228 178-238 (437)
225 4b4t_K 26S protease regulatory 95.0 0.04 1.4E-06 57.7 7.4 54 175-228 169-229 (428)
226 1ypw_A Transitional endoplasmi 94.9 0.04 1.4E-06 63.4 7.8 53 176-228 202-261 (806)
227 2i1q_A DNA repair and recombin 94.9 0.062 2.1E-06 54.6 8.5 90 204-294 97-214 (322)
228 4b4t_H 26S protease regulatory 94.9 0.04 1.4E-06 57.8 7.0 52 177-228 208-266 (467)
229 1sky_E F1-ATPase, F1-ATP synth 94.9 0.06 2.1E-06 56.7 8.4 87 207-294 153-255 (473)
230 1xp8_A RECA protein, recombina 94.8 0.063 2.1E-06 55.2 8.4 84 204-294 73-162 (366)
231 1u94_A RECA protein, recombina 94.8 0.044 1.5E-06 56.2 7.2 84 204-294 62-151 (356)
232 3tqc_A Pantothenate kinase; bi 94.8 0.07 2.4E-06 53.7 8.4 44 182-227 71-114 (321)
233 2bjv_A PSP operon transcriptio 94.8 0.024 8E-07 55.9 4.9 47 178-228 6-52 (265)
234 3ice_A Transcription terminati 94.8 0.021 7.1E-07 58.2 4.4 55 188-248 162-217 (422)
235 3c8u_A Fructokinase; YP_612366 94.6 0.024 8.3E-07 53.4 4.2 39 186-228 7-45 (208)
236 4b4t_M 26S protease regulatory 94.5 0.044 1.5E-06 57.5 6.4 53 176-228 179-238 (434)
237 1odf_A YGR205W, hypothetical 3 94.5 0.025 8.4E-07 56.3 4.2 26 203-228 29-54 (290)
238 2ga8_A Hypothetical 39.9 kDa p 94.5 0.029 9.9E-07 56.8 4.7 46 181-228 2-47 (359)
239 3cf2_A TER ATPase, transitiona 94.5 0.094 3.2E-06 59.5 9.3 99 176-294 202-307 (806)
240 3lw7_A Adenylate kinase relate 94.5 0.016 5.5E-07 52.8 2.6 20 206-225 2-21 (179)
241 1in4_A RUVB, holliday junction 94.4 0.023 7.7E-07 58.2 3.8 50 178-228 25-74 (334)
242 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.19 6.4E-06 47.9 10.2 47 205-255 23-69 (235)
243 3kb2_A SPBC2 prophage-derived 94.3 0.019 6.4E-07 52.2 2.7 22 206-227 2-23 (173)
244 3pxi_A Negative regulator of g 94.3 0.028 9.4E-07 64.6 4.7 45 178-228 180-224 (758)
245 1zp6_A Hypothetical protein AT 94.3 0.021 7.1E-07 53.0 3.0 25 204-228 8-32 (191)
246 3dm5_A SRP54, signal recogniti 94.2 0.37 1.3E-05 50.5 12.6 25 204-228 99-123 (443)
247 3vaa_A Shikimate kinase, SK; s 94.2 0.02 6.9E-07 53.6 2.7 24 204-227 24-47 (199)
248 3fwy_A Light-independent proto 94.2 0.023 7.9E-07 57.2 3.3 25 203-227 46-70 (314)
249 1sxj_E Activator 1 40 kDa subu 94.2 0.024 8.2E-07 58.5 3.5 44 178-227 14-58 (354)
250 1kgd_A CASK, peripheral plasma 94.2 0.021 7.1E-07 52.5 2.6 24 205-228 5-28 (180)
251 1qhx_A CPT, protein (chloramph 94.1 0.021 7.2E-07 52.2 2.6 22 206-227 4-25 (178)
252 2zr9_A Protein RECA, recombina 94.1 0.11 3.7E-06 53.2 8.2 84 204-294 60-149 (349)
253 1pzn_A RAD51, DNA repair and r 94.1 0.21 7.3E-06 51.1 10.3 90 204-294 130-241 (349)
254 1ojl_A Transcriptional regulat 94.1 0.028 9.5E-07 56.6 3.6 47 178-228 2-48 (304)
255 2xxa_A Signal recognition part 94.1 0.3 1E-05 51.4 11.6 42 187-228 79-123 (433)
256 3io5_A Recombination and repai 94.0 0.15 5.3E-06 50.5 8.6 83 207-294 30-121 (333)
257 1ofh_A ATP-dependent HSL prote 93.9 0.027 9.3E-07 56.8 3.3 51 178-228 15-73 (310)
258 1ly1_A Polynucleotide kinase; 93.9 0.028 9.4E-07 51.5 3.0 22 206-227 3-24 (181)
259 4b4t_I 26S protease regulatory 93.9 0.097 3.3E-06 54.3 7.2 54 175-228 179-239 (437)
260 1xjc_A MOBB protein homolog; s 93.8 0.05 1.7E-06 49.0 4.4 25 204-228 3-27 (169)
261 3rfe_A Platelet glycoprotein I 93.8 0.069 2.3E-06 45.9 5.1 52 412-466 11-65 (130)
262 1kag_A SKI, shikimate kinase I 93.8 0.022 7.5E-07 51.8 2.0 22 206-227 5-26 (173)
263 1sxj_C Activator 1 40 kDa subu 93.8 0.042 1.4E-06 56.3 4.3 45 178-228 25-69 (340)
264 3uie_A Adenylyl-sulfate kinase 93.7 0.034 1.2E-06 52.0 3.3 25 204-228 24-48 (200)
265 2r62_A Cell division protease 93.7 0.034 1.2E-06 54.7 3.5 52 177-228 10-67 (268)
266 2r44_A Uncharacterized protein 93.7 0.05 1.7E-06 55.5 4.7 42 178-227 27-68 (331)
267 3trf_A Shikimate kinase, SK; a 93.7 0.029 9.9E-07 51.7 2.6 23 205-227 5-27 (185)
268 2p5t_B PEZT; postsegregational 93.7 0.059 2E-06 52.5 5.0 42 185-227 13-54 (253)
269 1vma_A Cell division protein F 93.6 0.23 7.8E-06 49.6 9.2 25 204-228 103-127 (306)
270 1gvn_B Zeta; postsegregational 93.5 0.062 2.1E-06 53.4 5.0 42 185-227 14-55 (287)
271 1zuh_A Shikimate kinase; alpha 93.5 0.032 1.1E-06 50.5 2.6 25 203-227 5-29 (168)
272 1knq_A Gluconate kinase; ALFA/ 93.5 0.036 1.2E-06 50.5 3.0 24 204-227 7-30 (175)
273 3kl4_A SRP54, signal recogniti 93.5 0.35 1.2E-05 50.7 10.7 25 204-228 96-120 (433)
274 2x8a_A Nuclear valosin-contain 93.5 0.15 5.2E-06 50.2 7.7 49 178-228 10-67 (274)
275 2gno_A DNA polymerase III, gam 93.5 0.24 8.2E-06 49.6 9.2 41 182-228 1-41 (305)
276 1nks_A Adenylate kinase; therm 93.4 0.036 1.2E-06 51.3 2.8 23 206-228 2-24 (194)
277 4gp7_A Metallophosphoesterase; 93.4 0.039 1.3E-06 50.1 3.0 23 205-227 9-31 (171)
278 2bdt_A BH3686; alpha-beta prot 93.4 0.041 1.4E-06 50.9 3.1 22 206-227 3-24 (189)
279 2qt1_A Nicotinamide riboside k 93.4 0.043 1.5E-06 51.6 3.3 25 204-228 20-44 (207)
280 3hws_A ATP-dependent CLP prote 93.3 0.06 2.1E-06 55.7 4.7 50 179-228 16-74 (363)
281 4eun_A Thermoresistant glucoki 93.3 0.035 1.2E-06 52.0 2.6 25 204-228 28-52 (200)
282 3t61_A Gluconokinase; PSI-biol 93.3 0.028 9.5E-07 52.7 1.9 24 205-228 18-41 (202)
283 1uf9_A TT1252 protein; P-loop, 93.3 0.041 1.4E-06 51.4 3.1 25 203-227 6-30 (203)
284 3tr0_A Guanylate kinase, GMP k 93.3 0.037 1.3E-06 51.9 2.8 23 206-228 8-30 (205)
285 3asz_A Uridine kinase; cytidin 93.3 0.04 1.4E-06 52.0 3.0 25 204-228 5-29 (211)
286 3a00_A Guanylate kinase, GMP k 93.3 0.032 1.1E-06 51.5 2.2 23 206-228 2-24 (186)
287 2j37_W Signal recognition part 93.3 0.53 1.8E-05 50.4 11.9 42 187-228 80-124 (504)
288 3bh0_A DNAB-like replicative h 93.2 0.37 1.3E-05 48.5 10.2 52 204-259 67-118 (315)
289 3e70_C DPA, signal recognition 93.2 0.45 1.5E-05 48.0 10.7 26 203-228 127-152 (328)
290 2rhm_A Putative kinase; P-loop 93.2 0.048 1.7E-06 50.5 3.3 24 204-227 4-27 (193)
291 2jaq_A Deoxyguanosine kinase; 93.1 0.04 1.4E-06 51.6 2.7 22 207-228 2-23 (205)
292 1fx0_B ATP synthase beta chain 93.1 0.19 6.7E-06 53.0 8.1 53 206-259 166-219 (498)
293 1kht_A Adenylate kinase; phosp 93.1 0.039 1.3E-06 51.0 2.6 23 206-228 4-26 (192)
294 2ze6_A Isopentenyl transferase 93.1 0.043 1.5E-06 53.5 3.0 23 206-228 2-24 (253)
295 2if2_A Dephospho-COA kinase; a 93.1 0.038 1.3E-06 51.8 2.5 22 206-227 2-23 (204)
296 2ck3_D ATP synthase subunit be 93.1 0.29 9.8E-06 51.5 9.2 65 189-259 142-207 (482)
297 3lda_A DNA repair protein RAD5 93.1 0.44 1.5E-05 49.5 10.7 90 204-294 177-283 (400)
298 3tau_A Guanylate kinase, GMP k 93.0 0.045 1.5E-06 51.6 2.9 25 204-228 7-31 (208)
299 2f1r_A Molybdopterin-guanine d 93.0 0.04 1.4E-06 49.9 2.4 24 205-228 2-25 (171)
300 3iij_A Coilin-interacting nucl 93.0 0.035 1.2E-06 50.8 2.1 24 204-227 10-33 (180)
301 2c9o_A RUVB-like 1; hexameric 93.0 0.082 2.8E-06 56.6 5.2 48 177-228 36-86 (456)
302 2yvu_A Probable adenylyl-sulfa 93.0 0.06 2E-06 49.6 3.6 25 204-228 12-36 (186)
303 1ye8_A Protein THEP1, hypothet 93.0 0.046 1.6E-06 50.0 2.8 23 207-229 2-24 (178)
304 2j41_A Guanylate kinase; GMP, 93.0 0.042 1.4E-06 51.6 2.6 24 205-228 6-29 (207)
305 1jjv_A Dephospho-COA kinase; P 93.0 0.051 1.7E-06 51.1 3.2 22 206-227 3-24 (206)
306 1ukz_A Uridylate kinase; trans 93.0 0.055 1.9E-06 50.7 3.4 24 204-227 14-37 (203)
307 3hjn_A DTMP kinase, thymidylat 92.9 0.28 9.7E-06 45.5 8.2 85 207-294 2-91 (197)
308 2qor_A Guanylate kinase; phosp 92.9 0.036 1.2E-06 52.1 2.0 25 204-228 11-35 (204)
309 1lvg_A Guanylate kinase, GMP k 92.9 0.038 1.3E-06 51.6 2.2 23 205-227 4-26 (198)
310 2hf9_A Probable hydrogenase ni 92.9 0.072 2.5E-06 50.7 4.2 25 204-228 37-61 (226)
311 1cke_A CK, MSSA, protein (cyti 92.9 0.046 1.6E-06 52.2 2.8 22 206-227 6-27 (227)
312 1ixz_A ATP-dependent metallopr 92.8 0.062 2.1E-06 52.4 3.7 51 177-228 15-72 (254)
313 1via_A Shikimate kinase; struc 92.8 0.038 1.3E-06 50.3 2.0 22 206-227 5-26 (175)
314 1uj2_A Uridine-cytidine kinase 92.8 0.053 1.8E-06 52.8 3.1 24 204-227 21-44 (252)
315 2yhs_A FTSY, cell division pro 92.8 0.41 1.4E-05 50.8 10.0 43 204-249 292-334 (503)
316 1y63_A LMAJ004144AAA protein; 92.7 0.054 1.9E-06 49.8 2.9 24 204-227 9-32 (184)
317 2ffh_A Protein (FFH); SRP54, s 92.7 0.34 1.2E-05 50.7 9.3 25 204-228 97-121 (425)
318 3nbx_X ATPase RAVA; AAA+ ATPas 92.7 0.072 2.5E-06 57.3 4.2 42 179-228 23-64 (500)
319 3aez_A Pantothenate kinase; tr 92.6 0.061 2.1E-06 54.1 3.4 24 204-227 89-112 (312)
320 2wsm_A Hydrogenase expression/ 92.6 0.066 2.3E-06 50.8 3.5 25 204-228 29-53 (221)
321 2grj_A Dephospho-COA kinase; T 92.6 0.065 2.2E-06 49.6 3.3 25 203-227 10-34 (192)
322 1tev_A UMP-CMP kinase; ploop, 92.6 0.057 2E-06 50.0 3.0 23 205-227 3-25 (196)
323 2c95_A Adenylate kinase 1; tra 92.6 0.054 1.8E-06 50.3 2.8 24 204-227 8-31 (196)
324 3ney_A 55 kDa erythrocyte memb 92.6 0.054 1.8E-06 50.2 2.6 25 204-228 18-42 (197)
325 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.062 2.1E-06 52.6 3.1 24 205-228 4-27 (260)
326 1qvr_A CLPB protein; coiled co 92.5 0.12 4.1E-06 60.1 6.1 50 179-228 559-611 (854)
327 1gtv_A TMK, thymidylate kinase 92.5 0.04 1.4E-06 52.1 1.7 23 206-228 1-23 (214)
328 1znw_A Guanylate kinase, GMP k 92.4 0.059 2E-06 50.7 2.8 24 205-228 20-43 (207)
329 2r6a_A DNAB helicase, replicat 92.4 3 0.0001 44.2 16.5 51 204-257 202-252 (454)
330 2bbw_A Adenylate kinase 4, AK4 92.4 0.06 2.1E-06 52.2 2.9 23 205-227 27-49 (246)
331 2iyv_A Shikimate kinase, SK; t 92.4 0.044 1.5E-06 50.4 1.8 21 207-227 4-24 (184)
332 3cm0_A Adenylate kinase; ATP-b 92.4 0.064 2.2E-06 49.3 3.0 22 206-227 5-26 (186)
333 1htw_A HI0065; nucleotide-bind 92.4 0.072 2.5E-06 47.5 3.1 25 204-228 32-56 (158)
334 1iy2_A ATP-dependent metallopr 92.3 0.097 3.3E-06 51.8 4.4 51 177-228 39-96 (278)
335 1e6c_A Shikimate kinase; phosp 92.3 0.049 1.7E-06 49.4 2.1 22 206-227 3-24 (173)
336 3t15_A Ribulose bisphosphate c 92.3 0.1 3.5E-06 52.0 4.5 25 204-228 35-59 (293)
337 1zu4_A FTSY; GTPase, signal re 92.3 0.23 7.7E-06 50.1 7.1 26 203-228 103-128 (320)
338 2bwj_A Adenylate kinase 5; pho 92.2 0.058 2E-06 50.2 2.5 23 205-227 12-34 (199)
339 2plr_A DTMP kinase, probable t 92.2 0.067 2.3E-06 50.3 3.0 23 206-228 5-27 (213)
340 1z6g_A Guanylate kinase; struc 92.2 0.053 1.8E-06 51.5 2.2 24 205-228 23-46 (218)
341 1qf9_A UMP/CMP kinase, protein 92.2 0.067 2.3E-06 49.4 2.9 23 205-227 6-28 (194)
342 2z0h_A DTMP kinase, thymidylat 92.2 0.18 6.3E-06 46.6 5.9 22 207-228 2-23 (197)
343 4e22_A Cytidylate kinase; P-lo 92.1 0.068 2.3E-06 52.1 2.9 23 205-227 27-49 (252)
344 1rj9_A FTSY, signal recognitio 92.1 0.071 2.4E-06 53.4 3.1 25 204-228 101-125 (304)
345 2jeo_A Uridine-cytidine kinase 92.1 0.077 2.6E-06 51.4 3.3 24 204-227 24-47 (245)
346 1a5t_A Delta prime, HOLB; zinc 92.1 0.44 1.5E-05 48.4 9.1 40 184-228 8-47 (334)
347 3umf_A Adenylate kinase; rossm 92.1 0.077 2.6E-06 50.0 3.1 26 203-228 27-52 (217)
348 2pt5_A Shikimate kinase, SK; a 92.0 0.07 2.4E-06 48.1 2.7 21 207-227 2-22 (168)
349 1ex7_A Guanylate kinase; subst 92.0 0.059 2E-06 49.5 2.2 22 206-227 2-23 (186)
350 2pez_A Bifunctional 3'-phospho 92.0 0.08 2.8E-06 48.3 3.1 25 204-228 4-28 (179)
351 4a74_A DNA repair and recombin 92.0 0.21 7.2E-06 47.5 6.3 48 204-251 24-75 (231)
352 3p32_A Probable GTPase RV1496/ 92.0 0.14 4.9E-06 52.6 5.3 37 187-227 65-101 (355)
353 1np6_A Molybdopterin-guanine d 91.9 0.077 2.6E-06 48.2 2.7 25 204-228 5-29 (174)
354 4h09_A Hypothetical leucine ri 91.9 1.6 5.4E-05 45.0 13.4 77 404-486 41-119 (379)
355 4edh_A DTMP kinase, thymidylat 91.8 0.67 2.3E-05 43.5 9.4 24 205-228 6-29 (213)
356 2pbr_A DTMP kinase, thymidylat 91.8 0.075 2.6E-06 49.2 2.7 22 207-228 2-23 (195)
357 2cdn_A Adenylate kinase; phosp 91.8 0.076 2.6E-06 49.6 2.8 24 204-227 19-42 (201)
358 2b8t_A Thymidine kinase; deoxy 91.8 0.07 2.4E-06 50.5 2.5 84 205-293 12-98 (223)
359 1sq5_A Pantothenate kinase; P- 91.8 0.16 5.4E-06 51.1 5.3 24 204-227 79-102 (308)
360 1j8m_F SRP54, signal recogniti 91.8 0.39 1.3E-05 47.8 8.0 24 205-228 98-121 (297)
361 1s96_A Guanylate kinase, GMP k 91.7 0.078 2.7E-06 50.2 2.8 25 204-228 15-39 (219)
362 1r6b_X CLPA protein; AAA+, N-t 91.7 0.26 8.7E-06 56.6 7.6 51 178-228 458-511 (758)
363 2vli_A Antibiotic resistance p 91.7 0.057 1.9E-06 49.5 1.7 23 205-227 5-27 (183)
364 2og2_A Putative signal recogni 91.6 0.18 6.1E-06 51.6 5.4 25 204-228 156-180 (359)
365 2qgz_A Helicase loader, putati 91.6 0.16 5.5E-06 51.0 5.0 55 185-243 135-189 (308)
366 1g8p_A Magnesium-chelatase 38 91.6 0.087 3E-06 54.1 3.1 46 177-228 23-68 (350)
367 1aky_A Adenylate kinase; ATP:A 91.5 0.084 2.9E-06 50.1 2.8 23 205-227 4-26 (220)
368 2f6r_A COA synthase, bifunctio 91.5 0.098 3.4E-06 51.8 3.3 24 204-227 74-97 (281)
369 2i3b_A HCR-ntpase, human cance 91.5 0.075 2.6E-06 49.0 2.3 23 207-229 3-25 (189)
370 2ged_A SR-beta, signal recogni 91.4 0.15 5.1E-06 47.0 4.3 25 204-228 47-71 (193)
371 1m7g_A Adenylylsulfate kinase; 91.4 0.097 3.3E-06 49.3 3.0 25 204-228 24-48 (211)
372 3b9q_A Chloroplast SRP recepto 91.4 0.1 3.6E-06 52.1 3.4 25 204-228 99-123 (302)
373 2onk_A Molybdate/tungstate ABC 91.4 0.095 3.3E-06 50.4 2.9 23 204-227 24-46 (240)
374 2wwf_A Thymidilate kinase, put 91.4 0.083 2.8E-06 49.7 2.5 24 205-228 10-33 (212)
375 1um8_A ATP-dependent CLP prote 91.3 0.14 4.7E-06 53.2 4.4 50 179-228 22-95 (376)
376 1nn5_A Similar to deoxythymidy 91.3 0.091 3.1E-06 49.5 2.8 24 205-228 9-32 (215)
377 3d3q_A TRNA delta(2)-isopenten 91.3 0.095 3.2E-06 52.9 3.0 23 206-228 8-30 (340)
378 3vr4_D V-type sodium ATPase su 91.3 0.25 8.4E-06 51.6 6.1 86 207-294 153-258 (465)
379 3nwj_A ATSK2; P loop, shikimat 91.3 0.072 2.5E-06 51.6 2.0 23 205-227 48-70 (250)
380 1yrb_A ATP(GTP)binding protein 91.3 0.11 3.9E-06 50.7 3.5 26 203-228 12-37 (262)
381 3tlx_A Adenylate kinase 2; str 91.3 0.15 5.1E-06 49.3 4.3 24 204-227 28-51 (243)
382 1zd8_A GTP:AMP phosphotransfer 91.2 0.086 3E-06 50.3 2.5 23 205-227 7-29 (227)
383 2v54_A DTMP kinase, thymidylat 91.2 0.092 3.1E-06 49.0 2.6 23 206-228 5-27 (204)
384 1vht_A Dephospho-COA kinase; s 91.2 0.1 3.5E-06 49.4 3.0 23 205-227 4-26 (218)
385 2qtf_A Protein HFLX, GTP-bindi 91.1 0.58 2E-05 48.0 8.8 26 204-229 178-203 (364)
386 3end_A Light-independent proto 91.1 0.21 7.1E-06 50.2 5.3 43 203-247 39-81 (307)
387 3lnc_A Guanylate kinase, GMP k 91.0 0.073 2.5E-06 51.0 1.7 22 206-227 28-50 (231)
388 3be4_A Adenylate kinase; malar 90.9 0.093 3.2E-06 49.7 2.3 24 205-228 5-28 (217)
389 3tif_A Uncharacterized ABC tra 90.9 0.1 3.6E-06 50.0 2.7 23 205-227 31-53 (235)
390 3m6a_A ATP-dependent protease 90.9 0.11 3.8E-06 56.7 3.3 51 178-228 81-131 (543)
391 3l0o_A Transcription terminati 90.8 0.57 1.9E-05 47.7 7.9 54 188-247 163-217 (427)
392 2pcj_A ABC transporter, lipopr 90.8 0.1 3.5E-06 49.6 2.5 22 206-227 31-52 (224)
393 1zak_A Adenylate kinase; ATP:A 90.7 0.096 3.3E-06 49.8 2.2 23 205-227 5-27 (222)
394 2ehv_A Hypothetical protein PH 90.6 0.12 4E-06 50.1 2.9 24 204-227 29-52 (251)
395 3ake_A Cytidylate kinase; CMP 90.6 0.12 4E-06 48.5 2.8 21 207-227 4-24 (208)
396 3fb4_A Adenylate kinase; psych 90.5 0.12 4.1E-06 48.8 2.8 21 207-227 2-22 (216)
397 3pxi_A Negative regulator of g 90.5 0.32 1.1E-05 55.7 6.8 51 178-228 491-544 (758)
398 4a1f_A DNAB helicase, replicat 90.4 0.44 1.5E-05 48.2 6.9 52 204-259 45-96 (338)
399 2cbz_A Multidrug resistance-as 90.4 0.12 4.2E-06 49.6 2.7 24 205-228 31-54 (237)
400 3a8t_A Adenylate isopentenyltr 90.3 0.14 4.9E-06 51.4 3.2 25 204-228 39-63 (339)
401 3b85_A Phosphate starvation-in 90.3 0.097 3.3E-06 49.1 1.9 23 206-228 23-45 (208)
402 1b0u_A Histidine permease; ABC 90.3 0.12 4.2E-06 50.4 2.7 23 205-227 32-54 (262)
403 3gfo_A Cobalt import ATP-bindi 90.3 0.12 4.2E-06 50.7 2.7 22 206-227 35-56 (275)
404 2e87_A Hypothetical protein PH 90.3 2.2 7.5E-05 43.6 12.4 25 204-228 166-190 (357)
405 3dl0_A Adenylate kinase; phosp 90.3 0.13 4.4E-06 48.6 2.8 21 207-227 2-22 (216)
406 1g41_A Heat shock protein HSLU 90.3 0.27 9.2E-06 51.6 5.4 51 178-228 15-73 (444)
407 2qe7_A ATP synthase subunit al 90.3 0.73 2.5E-05 48.7 8.6 85 206-294 163-264 (502)
408 3r20_A Cytidylate kinase; stru 90.2 0.13 4.6E-06 49.0 2.8 23 205-227 9-31 (233)
409 2dhr_A FTSH; AAA+ protein, hex 90.2 0.21 7.3E-06 53.5 4.7 52 177-228 30-87 (499)
410 2v3c_C SRP54, signal recogniti 90.2 0.16 5.6E-06 53.4 3.6 26 204-229 98-123 (432)
411 1cp2_A CP2, nitrogenase iron p 90.1 0.28 9.7E-06 48.0 5.3 38 206-245 2-39 (269)
412 1oix_A RAS-related protein RAB 90.1 0.13 4.5E-06 47.5 2.6 25 204-228 28-52 (191)
413 1ji0_A ABC transporter; ATP bi 90.1 0.13 4.5E-06 49.5 2.7 22 206-227 33-54 (240)
414 2d2e_A SUFC protein; ABC-ATPas 90.1 0.14 4.8E-06 49.6 2.9 23 206-228 30-52 (250)
415 2wji_A Ferrous iron transport 90.1 0.16 5.6E-06 45.4 3.2 23 206-228 4-26 (165)
416 1mv5_A LMRA, multidrug resista 90.1 0.14 4.9E-06 49.3 2.9 24 205-228 28-51 (243)
417 4eaq_A DTMP kinase, thymidylat 90.1 0.26 9.1E-06 46.9 4.8 26 204-229 25-50 (229)
418 3crm_A TRNA delta(2)-isopenten 90.1 0.14 4.9E-06 51.2 3.0 22 206-227 6-27 (323)
419 2vp4_A Deoxynucleoside kinase; 90.1 0.14 4.9E-06 48.9 2.9 26 203-228 18-43 (230)
420 3mfy_A V-type ATP synthase alp 90.1 0.72 2.4E-05 49.2 8.3 59 189-256 216-275 (588)
421 2dyk_A GTP-binding protein; GT 90.1 0.16 5.5E-06 45.0 3.1 23 206-228 2-24 (161)
422 1sgw_A Putative ABC transporte 90.0 0.11 3.9E-06 48.8 2.1 23 206-228 36-58 (214)
423 1g6h_A High-affinity branched- 90.0 0.14 4.6E-06 50.0 2.7 23 206-228 34-56 (257)
424 2olj_A Amino acid ABC transpor 90.0 0.14 4.6E-06 50.1 2.7 23 205-227 50-72 (263)
425 2zej_A Dardarin, leucine-rich 90.0 0.13 4.5E-06 47.0 2.5 22 207-228 4-25 (184)
426 2pze_A Cystic fibrosis transme 90.0 0.14 4.8E-06 48.9 2.7 23 206-228 35-57 (229)
427 4g1u_C Hemin import ATP-bindin 90.0 0.14 4.6E-06 50.2 2.7 23 205-227 37-59 (266)
428 2afh_E Nitrogenase iron protei 90.0 0.29 1E-05 48.6 5.2 39 205-245 2-40 (289)
429 3exa_A TRNA delta(2)-isopenten 90.0 0.15 5.2E-06 50.6 3.0 24 205-228 3-26 (322)
430 1ls1_A Signal recognition part 89.9 0.16 5.5E-06 50.6 3.2 24 205-228 98-121 (295)
431 2zu0_C Probable ATP-dependent 89.9 0.15 5.1E-06 50.0 2.9 24 205-228 46-69 (267)
432 2ff7_A Alpha-hemolysin translo 89.9 0.14 4.9E-06 49.5 2.7 23 206-228 36-58 (247)
433 4hlc_A DTMP kinase, thymidylat 89.8 0.86 2.9E-05 42.5 8.0 50 206-258 3-52 (205)
434 1vpl_A ABC transporter, ATP-bi 89.8 0.15 5E-06 49.7 2.7 23 205-227 41-63 (256)
435 1cr0_A DNA primase/helicase; R 89.7 0.44 1.5E-05 47.4 6.4 52 205-259 35-86 (296)
436 2r9v_A ATP synthase subunit al 89.6 0.41 1.4E-05 50.6 6.0 85 206-294 176-277 (515)
437 2ghi_A Transport protein; mult 89.6 0.15 5.2E-06 49.7 2.7 24 205-228 46-69 (260)
438 2ixe_A Antigen peptide transpo 89.6 0.15 5.2E-06 50.0 2.7 24 205-228 45-68 (271)
439 2f9l_A RAB11B, member RAS onco 89.5 0.15 5.2E-06 47.3 2.5 24 205-228 5-28 (199)
440 2xb4_A Adenylate kinase; ATP-b 89.5 0.16 5.6E-06 48.2 2.7 21 207-227 2-22 (223)
441 2qi9_C Vitamin B12 import ATP- 89.5 0.16 5.5E-06 49.1 2.7 22 206-227 27-48 (249)
442 1e4v_A Adenylate kinase; trans 89.4 0.16 5.5E-06 47.9 2.6 21 207-227 2-22 (214)
443 2nq2_C Hypothetical ABC transp 89.4 0.17 5.7E-06 49.2 2.8 23 206-228 32-54 (253)
444 1q3t_A Cytidylate kinase; nucl 89.4 0.18 6.1E-06 48.5 3.0 25 203-227 14-38 (236)
445 2yz2_A Putative ABC transporte 89.4 0.16 5.5E-06 49.7 2.7 23 205-227 33-55 (266)
446 2eyu_A Twitching motility prot 89.3 0.18 6.2E-06 49.2 3.0 24 204-227 24-47 (261)
447 1a7j_A Phosphoribulokinase; tr 89.3 0.093 3.2E-06 52.2 0.9 24 204-227 4-27 (290)
448 4tmk_A Protein (thymidylate ki 89.3 1.3 4.4E-05 41.5 8.7 52 206-258 4-55 (213)
449 1ak2_A Adenylate kinase isoenz 89.3 0.18 6.2E-06 48.3 2.9 24 205-228 16-39 (233)
450 2ihy_A ABC transporter, ATP-bi 89.3 0.17 5.7E-06 50.0 2.7 23 206-228 48-70 (279)
451 3gqb_B V-type ATP synthase bet 89.2 0.44 1.5E-05 49.7 5.9 89 206-294 148-261 (464)
452 3nh6_A ATP-binding cassette SU 89.2 0.17 5.8E-06 50.5 2.7 23 205-227 80-102 (306)
453 3k1j_A LON protease, ATP-depen 89.1 0.22 7.5E-06 55.3 3.8 43 178-228 41-83 (604)
454 2ce2_X GTPase HRAS; signaling 89.0 0.17 5.9E-06 44.9 2.4 22 207-228 5-26 (166)
455 1ltq_A Polynucleotide kinase; 89.0 0.19 6.5E-06 50.3 3.0 22 206-227 3-24 (301)
456 2wjg_A FEOB, ferrous iron tran 89.0 0.23 7.8E-06 45.4 3.3 24 205-228 7-30 (188)
457 1q57_A DNA primase/helicase; d 89.0 1.2 4E-05 48.2 9.4 54 204-260 241-294 (503)
458 3foz_A TRNA delta(2)-isopenten 88.9 0.2 6.8E-06 49.6 3.0 25 204-228 9-33 (316)
459 3sop_A Neuronal-specific septi 88.9 0.18 6.3E-06 49.4 2.7 22 207-228 4-25 (270)
460 2ck3_A ATP synthase subunit al 88.8 0.76 2.6E-05 48.7 7.4 101 189-294 151-272 (510)
461 3bgw_A DNAB-like replicative h 88.8 1.3 4.5E-05 46.7 9.4 51 204-258 196-246 (444)
462 2v9p_A Replication protein E1; 88.8 0.21 7E-06 49.8 2.9 24 204-227 125-148 (305)
463 1tue_A Replication protein E1; 88.7 0.34 1.2E-05 44.7 4.1 37 187-228 45-81 (212)
464 3con_A GTPase NRAS; structural 88.7 0.19 6.5E-06 46.1 2.6 23 206-228 22-44 (190)
465 4dzz_A Plasmid partitioning pr 88.7 0.41 1.4E-05 44.5 4.9 41 206-248 2-43 (206)
466 2nzj_A GTP-binding protein REM 88.6 0.21 7.2E-06 44.9 2.8 24 205-228 4-27 (175)
467 3sr0_A Adenylate kinase; phosp 88.6 0.2 6.9E-06 46.8 2.6 22 207-228 2-23 (206)
468 2r8r_A Sensor protein; KDPD, P 88.5 0.46 1.6E-05 44.7 5.0 38 207-246 8-45 (228)
469 3oaa_A ATP synthase subunit al 88.5 1.3 4.4E-05 46.8 8.8 85 206-294 163-264 (513)
470 1nij_A Hypothetical protein YJ 88.5 0.19 6.5E-06 50.7 2.5 25 204-228 3-27 (318)
471 3ld9_A DTMP kinase, thymidylat 88.4 0.69 2.4E-05 43.6 6.2 55 204-258 20-74 (223)
472 1z2a_A RAS-related protein RAB 88.3 0.26 8.9E-06 43.9 3.2 24 205-228 5-28 (168)
473 1fx0_A ATP synthase alpha chai 88.3 0.42 1.4E-05 50.6 5.0 83 206-294 164-265 (507)
474 2lkc_A Translation initiation 88.3 0.28 9.5E-06 44.3 3.4 25 204-228 7-31 (178)
475 2pjz_A Hypothetical protein ST 88.2 0.22 7.4E-06 48.6 2.7 23 206-228 31-53 (263)
476 3cmu_A Protein RECA, recombina 88.2 0.57 1.9E-05 58.3 6.8 84 204-294 1426-1515(2050)
477 2c61_A A-type ATP synthase non 88.1 0.46 1.6E-05 49.9 5.2 89 206-294 153-259 (469)
478 3zvl_A Bifunctional polynucleo 88.1 0.24 8.2E-06 52.1 3.1 25 204-228 257-281 (416)
479 2gj8_A MNME, tRNA modification 88.0 0.23 7.9E-06 44.9 2.6 23 206-228 5-27 (172)
480 1u8z_A RAS-related protein RAL 88.0 0.23 7.9E-06 44.2 2.6 23 206-228 5-27 (168)
481 3fkq_A NTRC-like two-domain pr 88.0 0.5 1.7E-05 48.9 5.4 45 202-248 140-185 (373)
482 2erx_A GTP-binding protein DI- 87.9 0.25 8.4E-06 44.2 2.7 22 207-228 5-26 (172)
483 1svm_A Large T antigen; AAA+ f 87.9 0.39 1.3E-05 49.5 4.4 24 204-227 168-191 (377)
484 3q85_A GTP-binding protein REM 87.8 0.25 8.7E-06 44.1 2.7 22 206-227 3-24 (169)
485 2ocp_A DGK, deoxyguanosine kin 87.8 0.26 9E-06 47.4 3.0 23 206-228 3-25 (241)
486 1c1y_A RAS-related protein RAP 87.8 0.24 8.3E-06 44.1 2.6 22 207-228 5-26 (167)
487 3q72_A GTP-binding protein RAD 87.8 0.22 7.5E-06 44.4 2.3 22 207-228 4-25 (166)
488 1svi_A GTP-binding protein YSX 87.7 0.28 9.7E-06 45.1 3.1 25 204-228 22-46 (195)
489 1nlf_A Regulatory protein REPA 87.7 0.23 7.8E-06 49.1 2.5 24 205-228 30-53 (279)
490 2dr3_A UPF0273 protein PH0284; 87.6 0.41 1.4E-05 46.0 4.3 48 205-256 23-70 (247)
491 3v9p_A DTMP kinase, thymidylat 87.6 0.51 1.8E-05 44.7 4.8 24 205-228 25-48 (227)
492 1z08_A RAS-related protein RAB 87.6 0.25 8.6E-06 44.2 2.5 25 204-228 5-29 (170)
493 3vr4_A V-type sodium ATPase ca 87.6 0.78 2.7E-05 49.2 6.5 58 189-255 221-279 (600)
494 1m7b_A RND3/RHOE small GTP-bin 87.5 0.25 8.4E-06 45.1 2.4 25 204-228 6-30 (184)
495 2bbs_A Cystic fibrosis transme 87.5 0.25 8.5E-06 49.0 2.6 24 205-228 64-87 (290)
496 3eph_A TRNA isopentenyltransfe 87.4 0.27 9.2E-06 50.7 2.9 22 206-227 3-24 (409)
497 3ihw_A Centg3; RAS, centaurin, 87.4 0.26 8.8E-06 45.1 2.5 24 205-228 20-43 (184)
498 1z0j_A RAB-22, RAS-related pro 87.4 0.26 9E-06 44.0 2.6 23 206-228 7-29 (170)
499 1ek0_A Protein (GTP-binding pr 87.3 0.27 9.2E-06 43.9 2.6 22 207-228 5-26 (170)
500 2q6t_A DNAB replication FORK h 87.3 1.6 5.5E-05 46.2 9.0 53 204-259 199-251 (444)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=7.5e-30 Score=284.25 Aligned_cols=203 Identities=20% Similarity=0.195 Sum_probs=167.5
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc--chhhhcccceEEEEEeCCCC--CHHHHHHHH
Q 039852 181 CGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN--HVEVKREFHKILWACVSETF--DEFRIAKAM 256 (731)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i 256 (731)
|||++++++|.++|.... ++..+||+|+||||+||||||++||+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997653 23689999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHccCCCC-------ChhhHHHHHHHHHHHhCCC-ceEEEehhhHH---------------------------------
Q 039852 257 LEALTGSTS-------NLDALQSLLISIDESIAGK-RFLLVLDDVML--------------------------------- 295 (731)
Q Consensus 257 ~~~~~~~~~-------~~~~~~~~~~~l~~~l~~k-r~llvlDdvw~--------------------------------- 295 (731)
+.+++.... +..+.+.+...+++.++++ ||||||||||+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeE
Confidence 999986421 2234566788999999996 99999999986
Q ss_pred ------------HHHHHHhcCCCCCcchhhHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCHHHHHHHHccccccccccc
Q 039852 296 ------------VLFKRLAFFGRSTEKCEKLEQIGQRIARKCKGLPLAVKTVRSLMSSKKTEEEWKRILNSDLWKVEEIE 363 (731)
Q Consensus 296 ------------~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 363 (731)
.||.+.||... .++.+.+++.+|+++|+|+||||+++|+.|+.+ + .+|...+....+.. ..
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~--~~ 360 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESR--GL 360 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHH--CS
T ss_pred EECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcc--cH
Confidence 78888887543 247888999999999999999999999999865 2 23333333322221 23
Q ss_pred ccchhhhhhhccCCcHHHHHHHH-----------HhhcccC
Q 039852 364 KGVLTPLRLSYNDLPSRVKRCFS-----------YCAIFVN 393 (731)
Q Consensus 364 ~~i~~~L~lsy~~L~~~~k~cf~-----------~~~~f~~ 393 (731)
..+..++.+||+.||.+++.||. ||++||+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~ 401 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPP 401 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCC
Confidence 56889999999999999999999 9999998
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.89 E-value=1.1e-23 Score=237.12 Aligned_cols=199 Identities=17% Similarity=0.122 Sum_probs=146.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccce-EEEEEeCCCCCHHHHHHHHH
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHK-ILWACVSETFDEFRIAKAML 257 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~ 257 (731)
..|||++++++|.++|...+ ..+||+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34999999999999998532 4789999999999999999999998889999997 99999999999988888877
Q ss_pred HHccCC------CC-----ChhhHHHHHHHHHHHh---CCCceEEEehhhHHHHHHHHhcCCCCC---------------
Q 039852 258 EALTGS------TS-----NLDALQSLLISIDESI---AGKRFLLVLDDVMLVLFKRLAFFGRST--------------- 308 (731)
Q Consensus 258 ~~~~~~------~~-----~~~~~~~~~~~l~~~l---~~kr~llvlDdvw~~lf~~~af~~~~~--------------- 308 (731)
..+... .. ...+.+.+...+++.+ .+||+||||||||+.-... +|+.+..
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe-~f~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHH-HHHSSCCEEEECSCSHHHHHHH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHH-hhCCCeEEEEeccChHHHHhcC
Confidence 753211 00 1234555666777765 7899999999998711000 0110000
Q ss_pred -------c--------chhhHHHHH---------HHHHHHcCCCchHHHHHHHHhcCCC-CHHHHHHHHccccccccccc
Q 039852 309 -------E--------KCEKLEQIG---------QRIARKCKGLPLAVKTVRSLMSSKK-TEEEWKRILNSDLWKVEEIE 363 (731)
Q Consensus 309 -------~--------~~~~l~~~~---------~~i~~~c~glPlai~~i~~~l~~~~-~~~~w~~~~~~~~~~~~~~~ 363 (731)
. ...+-.++- ....+.|+|+||||+++|+.|+.+. +..+|... ..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~ 352 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV----------NC 352 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SC
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC----------Ch
Confidence 0 000000000 1122349999999999999999874 67889753 12
Q ss_pred ccchhhhhhhccCCcHHH-HHHHHHhhcccC
Q 039852 364 KGVLTPLRLSYNDLPSRV-KRCFSYCAIFVN 393 (731)
Q Consensus 364 ~~i~~~L~lsy~~L~~~~-k~cf~~~~~f~~ 393 (731)
..+..++.+||+.||++. +.||++|++||+
T Consensus 353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPe 383 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383 (1221)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCT
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCC
Confidence 458899999999999998 999999999998
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=1.5e-23 Score=258.86 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=157.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhh-hccc-ceEEEEEeCCCCC--HHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEV-KREF-HKILWACVSETFD--EFR 251 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~ 251 (731)
....+|||++++++|.++|.... ++.++|+|+||||+||||||+++|++.++ ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 45579999999999999997553 36899999999999999999999998654 4555 5677999998654 344
Q ss_pred HHHHHHHHccCCC----CChhhHHHHHHHHHHHhCCC--ceEEEehhhHH------------------------------
Q 039852 252 IAKAMLEALTGST----SNLDALQSLLISIDESIAGK--RFLLVLDDVML------------------------------ 295 (731)
Q Consensus 252 i~~~i~~~~~~~~----~~~~~~~~~~~~l~~~l~~k--r~llvlDdvw~------------------------------ 295 (731)
.+..++..+.... ....+.+.+...++..+.++ ||||||||||+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCc
Confidence 4666777766432 22356677888899999877 99999999987
Q ss_pred ---------------HHHHHHhcCCCCCcchhhHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCHHHHHHHHccc---cc
Q 039852 296 ---------------VLFKRLAFFGRSTEKCEKLEQIGQRIARKCKGLPLAVKTVRSLMSSKKTEEEWKRILNSD---LW 357 (731)
Q Consensus 296 ---------------~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~~w~~~~~~~---~~ 357 (731)
.||...++.. .+.+.+++.+|+++|+|+||||+++|++|+.+. ..|...+... .+
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 5666555322 133445788999999999999999999999765 3566555432 11
Q ss_pred c-ccc----ccccchhhhhhhccCCcHHHHHHHHHhhcccC
Q 039852 358 K-VEE----IEKGVLTPLRLSYNDLPSRVKRCFSYCAIFVN 393 (731)
Q Consensus 358 ~-~~~----~~~~i~~~L~lsy~~L~~~~k~cf~~~~~f~~ 393 (731)
. +.. ..+.+..++.+||+.|+++.+.||.+|++||+
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~ 391 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK 391 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCT
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCC
Confidence 1 111 11358889999999999999999999999997
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.6e-21 Score=202.78 Aligned_cols=231 Identities=22% Similarity=0.247 Sum_probs=187.6
Q ss_pred cccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCc
Q 039852 408 LVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGE 487 (731)
Q Consensus 408 L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 487 (731)
..++++|+|++|.+..+|..+++|.+|++|++++|. +..+|..++++++|++|++++| .+..+|..++++++|+.|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 478999999999999999999999999999999954 6699999999999999999999 56689999999999999988
Q ss_pred eEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHh
Q 039852 488 FHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLL 567 (731)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 567 (731)
..+.... .....+.. .. ....+.++++|+.|++++|... .++
T Consensus 158 ~~n~~~~-------~~p~~~~~------~~-------------~~~~~~~l~~L~~L~L~~n~l~------------~lp 199 (328)
T 4fcg_A 158 RACPELT-------ELPEPLAS------TD-------------ASGEHQGLVNLQSLRLEWTGIR------------SLP 199 (328)
T ss_dssp EEETTCC-------CCCSCSEE------EC--------------CCCEEESTTCCEEEEEEECCC------------CCC
T ss_pred CCCCCcc-------ccChhHhh------cc-------------chhhhccCCCCCEEECcCCCcC------------cch
Confidence 7765432 11111111 00 0113567889999999999771 234
Q ss_pred hcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccc
Q 039852 568 EALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIED 647 (731)
Q Consensus 568 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~ 647 (731)
..+..+++|++|++++|.+.+ +|.. ++.+++|++|+|++|...+.++..+ ..+++|+.|++++
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~~-l~~~----------l~~l~~L~~L~Ls~n~~~~~~p~~~------~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLSA-LGPA----------IHHLPKLEELDLRGCTALRNYPPIF------GGRAPLKRLILKD 262 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCCC-CCGG----------GGGCTTCCEEECTTCTTCCBCCCCT------TCCCCCCEEECTT
T ss_pred HhhcCCCCCCEEEccCCCCCc-Cchh----------hccCCCCCEEECcCCcchhhhHHHh------cCCCCCCEEECCC
Confidence 556678899999999999887 7763 4668999999999998887777654 5789999999999
Q ss_pred cccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEcc
Q 039852 648 LLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILM 703 (731)
Q Consensus 648 ~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~ 703 (731)
|..+..++.... .+++|++|++++|+.++.+|..+.++++|+.+.+..
T Consensus 263 n~~~~~~p~~~~--------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 263 CSNLLTLPLDIH--------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCBCCTTGG--------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCchhhcchhhh--------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 987777775543 899999999999999999999999999999998874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=9.5e-22 Score=228.90 Aligned_cols=293 Identities=15% Similarity=0.052 Sum_probs=183.7
Q ss_pred chhhhhc--cccccEEeecCCccc-cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 401 IPRNIEK--LVHLRYLNLSGQDIV-QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 401 lp~~i~~--L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
+|..++. +.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++.+++|++|++++|.....+|..++
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 3444444 556666666666655 5666777777777777777654456677777777777777777754446666777
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCccc
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 557 (731)
.+++|+.|++..+... +..+..+.++++|+.|++++.. .....+..+..+++|+.|+|+.|..
T Consensus 464 ~l~~L~~L~L~~N~l~-------~~~p~~l~~l~~L~~L~L~~N~----l~~~~p~~~~~l~~L~~L~L~~N~l------ 526 (768)
T 3rgz_A 464 YVKTLETLILDFNDLT-------GEIPSGLSNCTNLNWISLSNNR----LTGEIPKWIGRLENLAILKLSNNSF------ 526 (768)
T ss_dssp GCTTCCEEECCSSCCC-------SCCCGGGGGCTTCCEEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCC------
T ss_pred CCCCceEEEecCCccc-------CcCCHHHhcCCCCCEEEccCCc----cCCcCChHHhcCCCCCEEECCCCcc------
Confidence 7777777766544333 2334556677777777776632 2233444566777888888887765
Q ss_pred CCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc--c-------------------------------------
Q 039852 558 RKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK--L------------------------------------- 598 (731)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~--L------------------------------------- 598 (731)
....+..+..+++|+.|++++|.+.+.+|.++... +
T Consensus 527 -----~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 527 -----SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp -----EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred -----cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 22344556677888888888888876678766431 0
Q ss_pred ---------------------cCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccc
Q 039852 599 ---------------------RAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYG 657 (731)
Q Consensus 599 ---------------------~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~ 657 (731)
...+.++.+++|++|+|+++.-.+.+|..+ +.+++|+.|+++++.--..+|..
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l------~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI------GSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG------GGCTTCCEEECCSSCCCSCCCGG
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH------hccccCCEEeCcCCccCCCCChH
Confidence 011235667888999998876555666654 57788899998887433344443
Q ss_pred cccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCch-----------------------hH----Hh
Q 039852 658 ITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCGL-----------------------LK----ER 710 (731)
Q Consensus 658 ~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~-----------------------L~----~~ 710 (731)
. +.+++|+.|++++|.--+.+|..+..+++|++|++++|+. |+ ..
T Consensus 676 l--------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~ 747 (768)
T 3rgz_A 676 V--------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747 (768)
T ss_dssp G--------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCC
T ss_pred H--------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcC
Confidence 3 3788888888888766667888888888888888887631 11 14
Q ss_pred hccCCCCCcccccCCCCcc
Q 039852 711 YRKGKGQDWAKISHIPNID 729 (731)
Q Consensus 711 ~~~~~~~~~~~i~hip~i~ 729 (731)
|....+++|++|+|+|.++
T Consensus 748 C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 748 CDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSCC--------------
T ss_pred CCCCccCCCCCCCCccccC
Confidence 5567788999999999765
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.84 E-value=4.6e-21 Score=216.74 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=152.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhh-hccc-ceEEEEEeCCCCCHHHHHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEV-KREF-HKILWACVSETFDEFRIAK 254 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~ 254 (731)
...+|||+.+.++|.++|.... .+.++|+|+||||+||||||+.+|++.++ +.+| +.++|++++.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4569999999999999997543 25789999999999999999999998766 7889 47999999876 4444444
Q ss_pred HH---HHHccCC----CCChhhHHHHHHHHHHHhCC--CceEEEehhhHH------------------------------
Q 039852 255 AM---LEALTGS----TSNLDALQSLLISIDESIAG--KRFLLVLDDVML------------------------------ 295 (731)
Q Consensus 255 ~i---~~~~~~~----~~~~~~~~~~~~~l~~~l~~--kr~llvlDdvw~------------------------------ 295 (731)
.+ +..+... .....+.+.....+...+.+ +++||||||||+
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~ 277 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPK 277 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCE
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCc
Confidence 43 3344321 12234556667777777765 799999999986
Q ss_pred ---------------HHHHHHhcCCCCCcchhhHHHHHHHHHHHcCCCchHHHHHHHHhcCCCCHHHHHHHHcccccc--
Q 039852 296 ---------------VLFKRLAFFGRSTEKCEKLEQIGQRIARKCKGLPLAVKTVRSLMSSKKTEEEWKRILNSDLWK-- 358 (731)
Q Consensus 296 ---------------~lf~~~af~~~~~~~~~~l~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~~w~~~~~~~~~~-- 358 (731)
.||...++.. .+...+.+.+|+++|+|+|+|+..+|+.++... ..|...+......
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQF 350 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCC
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHH
Confidence 5566655421 112245678899999999999999999998754 3577665432111
Q ss_pred --c----ccccccchhhhhhhccCCcHHHHHHHHHhhcccC
Q 039852 359 --V----EEIEKGVLTPLRLSYNDLPSRVKRCFSYCAIFVN 393 (731)
Q Consensus 359 --~----~~~~~~i~~~L~lsy~~L~~~~k~cf~~~~~f~~ 393 (731)
+ ......+..++..||+.||+..+.||.++++||.
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~ 391 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK 391 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCT
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCC
Confidence 1 1112357888999999999999999999999987
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=4.5e-21 Score=221.79 Aligned_cols=270 Identities=13% Similarity=0.140 Sum_probs=169.3
Q ss_pred chhhhhccccccEEeecCCcccc------------------cccccc--CCCceeEEeccCCcCcccCcccccCCCCcce
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQ------------------LSETLC--ELYILEKLDISYCMDLEELPEGIKKLINMRH 460 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~ 460 (731)
+|..|++|++|++|+|++|.++. +|..++ +|++|++|+|++|.....+|..+++|++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 89999999999999999999998 999988 9999999999998888999999999999999
Q ss_pred eeccCCcccc--ccccccCCCC-------CCCccCceEeCCCCCcCCCcccccc--cccCCCCCCcccccCCCCCCChhh
Q 039852 461 LLNDGTDTLR--YMVVGIGRLT-------GLRTLGEFHVSGGGGVDGRKACRLE--SLKNLEHLQVCGIRRLGDVSDVGE 529 (731)
Q Consensus 461 L~l~~~~~~~--~~p~~i~~L~-------~L~~L~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~~L~i~~l~~~~~~~~ 529 (731)
|++++|..+. .+|.++++++ +|+.|++..+... ..+. .+.++++|+.|.+++..- .
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--------~ip~~~~l~~L~~L~~L~Ls~N~l----~- 586 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--------EFPASASLQKMVKLGLLDCVHNKV----R- 586 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--------BCCCHHHHTTCTTCCEEECTTSCC----C-
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--------ccCChhhhhcCCCCCEEECCCCCc----c-
Confidence 9999995244 4887776665 7777776544332 1223 477777888877765321 1
Q ss_pred hhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCC-CceEEEeeecCCCCCccchhhc----c------
Q 039852 530 AKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLD-LKKLEIRYYRGNTVFRSLLVQK----L------ 598 (731)
Q Consensus 530 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~lp~~~~~~----L------ 598 (731)
..+ .+..+++|+.|+|++|... .++..+..+++ |+.|++++|.+.. +|.++... |
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE------------EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS------------CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECC
T ss_pred cch-hhcCCCcceEEECcCCccc------------cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECc
Confidence 122 5666777777777777651 23334555555 6666666666554 66543321 0
Q ss_pred -----cCCCCCC------CCCCcceeeecccc-----------------------CceEeCcccccccc--cccCcccce
Q 039852 599 -----RAAASFG------KMPSLEKLHIWGMK-----------------------RVKKVGDEFLGVEI--IIAFPKLKS 642 (731)
Q Consensus 599 -----~~l~~l~------~l~~L~~L~L~~~~-----------------------~l~~i~~~~~~~~~--~~~f~~L~~ 642 (731)
..+|.+. .+++|++|+|++|. .++.+|...+.... ...+++|+.
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccE
Confidence 0111111 22345555554432 13333332221100 012235555
Q ss_pred eeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 643 LLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 643 L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
|+++++ ++..++.... ...+|+|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 733 L~Ls~N-~L~~lp~~l~------~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFR------ATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp EECCSS-CCCCCCGGGS------TTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred EECCCC-CCccchHHhh------hccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 555555 3443332211 015778888888775 556677777778888888887755
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.9e-21 Score=217.70 Aligned_cols=265 Identities=14% Similarity=0.159 Sum_probs=155.4
Q ss_pred chhhhhccccccEEeecCCcccc------------------cccccc--CCCceeEEeccCCcCcccCcccccCCCCcce
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQ------------------LSETLC--ELYILEKLDISYCMDLEELPEGIKKLINMRH 460 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~ 460 (731)
+|..|+++++|++|+|++|.++. +|..++ +|++|++|++++|.....+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 78888888888888888888887 888888 8888888888887777788888888888888
Q ss_pred eeccCCcccc--ccccccCCC------CCCCccCceEeCCCCCcCCCcccccc--cccCCCCCCcccccCCCCCCChhhh
Q 039852 461 LLNDGTDTLR--YMVVGIGRL------TGLRTLGEFHVSGGGGVDGRKACRLE--SLKNLEHLQVCGIRRLGDVSDVGEA 530 (731)
Q Consensus 461 L~l~~~~~~~--~~p~~i~~L------~~L~~L~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~~L~i~~l~~~~~~~~~ 530 (731)
|++++|..+. .+|..++++ ++|+.|++..+.... .+. .+.++++|+.|.+++.. ....
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--------ip~~~~l~~l~~L~~L~L~~N~----l~g~ 345 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--------FPVETSLQKMKKLGMLECLYNQ----LEGK 345 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--------CCCHHHHTTCTTCCEEECCSCC----CEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--------cCchhhhccCCCCCEEeCcCCc----Cccc
Confidence 8888884244 477777766 777777765443221 223 46667777777666521 1212
Q ss_pred hhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCC-CceEEEeeecCCCCCccchhhc----c-------
Q 039852 531 KRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLD-LKKLEIRYYRGNTVFRSLLVQK----L------- 598 (731)
Q Consensus 531 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~lp~~~~~~----L------- 598 (731)
.+ .+..+++|+.|++++|.. ..++..+..+++ |++|++++|.+.. +|.++... |
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l------------~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQI------------TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEE------------EECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCS
T ss_pred hh-hhCCCCCCCEEECCCCcc------------ccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcC
Confidence 22 445555666666655543 012223333344 4444444444443 44433210 0
Q ss_pred ----cCC-CCCC-------CCCCcceeeeccccCceEeCcccccccccccCc----------------------------
Q 039852 599 ----RAA-ASFG-------KMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFP---------------------------- 638 (731)
Q Consensus 599 ----~~l-~~l~-------~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~---------------------------- 638 (731)
... ..++ .+++|++|+|++|. ++.++...+ ..++
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~-----~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELF-----STGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHH-----HTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHH-----ccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 000 1122 33445555554432 333333221 1233
Q ss_pred ---ccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 639 ---KLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 639 ---~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
+|+.|+++++ .+..++.... ...+++|++|++++| .+..+|..+..+++|++|++++|+
T Consensus 486 ~l~~L~~L~Ls~N-~l~~lp~~~~------~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 486 NTYLLTSIDLRFN-KLTKLSDDFR------ATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp TGGGCCEEECCSS-CCCBCCGGGS------TTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCB
T ss_pred ccCCccEEECcCC-cCCccChhhh------hccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCc
Confidence 5555555554 3333332211 016788888888885 555688777788888888886654
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=203.93 Aligned_cols=260 Identities=14% Similarity=0.122 Sum_probs=142.2
Q ss_pred hhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccccCCC
Q 039852 402 PRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 402 p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
|..|.++++|++|+|++|.+..+ |..++++.+|++|+|++| .+..+|.. +.++++|++|++++|......|..+..+
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 34455555566666655555544 445555555666665552 34444443 4555555555555553222233345555
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCC--------------------CChhhhhhccccccc
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDV--------------------SDVGEAKRLELDKKK 539 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~--------------------~~~~~~~~~~l~~~~ 539 (731)
++|+.|.+..+... ......+..+++|+.|.+.+..-. +.........+..++
T Consensus 128 ~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 128 YNLKSLEVGDNDLV-------YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TTCCEEEECCTTCC-------EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred ccCCEEECCCCccc-------eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 55555544332211 111223444445555444432110 011111122334444
Q ss_pred cCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 540 YLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 540 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
+|+.|+++.|... ...........+|++|++++|.+.. +|.+ .++.+++|++|+|+++.
T Consensus 201 ~L~~L~l~~~~~~-----------~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~---------~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 201 RLKVLEISHWPYL-----------DTMTPNCLYGLNLTSLSITHCNLTA-VPYL---------AVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp TCCEEEEECCTTC-----------CEECTTTTTTCCCSEEEEESSCCCS-CCHH---------HHTTCTTCCEEECCSSC
T ss_pred ccceeeCCCCccc-----------cccCcccccCccccEEECcCCcccc-cCHH---------HhcCccccCeeECCCCc
Confidence 4445554444320 0111112222355666666555544 4421 25678999999999865
Q ss_pred CceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCC-CCCCCCCccE
Q 039852 620 RVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD-YIHQTTTLKE 698 (731)
Q Consensus 620 ~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~~~l~~L~~ 698 (731)
++.++...+ ..+++|+.|+++++ .+..+.... +..+++|++|++++| .++.+|. .+..+++|++
T Consensus 260 -l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 260 -ISTIEGSML-----HELLRLQEIQLVGG-QLAVVEPYA-------FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLET 324 (477)
T ss_dssp -CCEECTTSC-----TTCTTCCEEECCSS-CCSEECTTT-------BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCE
T ss_pred -CCccChhhc-----cccccCCEEECCCC-ccceECHHH-------hcCcccCCEEECCCC-cCceeCHhHcCCCcccCE
Confidence 666666543 46789999999987 455443322 337899999999996 7888875 4578899999
Q ss_pred EEEccCc
Q 039852 699 LRILMCG 705 (731)
Q Consensus 699 L~l~~c~ 705 (731)
|+++++|
T Consensus 325 L~l~~N~ 331 (477)
T 2id5_A 325 LILDSNP 331 (477)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9999876
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=5.4e-20 Score=196.84 Aligned_cols=267 Identities=16% Similarity=0.155 Sum_probs=141.3
Q ss_pred cchhh-hhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCc-ccccCCCCcceeeccCCccccccccc-
Q 039852 400 KIPRN-IEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELP-EGIKKLINMRHLLNDGTDTLRYMVVG- 475 (731)
Q Consensus 400 ~lp~~-i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~- 475 (731)
.+|.. +..+++|++|+|++|.+..+|. .+.++++|++|++++|. +..+| ..++++++|++|++++| .+..+|.+
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 136 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 136 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHH
Confidence 34443 4667777777777777766654 56777777777777744 44443 34667777777777776 55566665
Q ss_pred cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCc
Q 039852 476 IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGE 555 (731)
Q Consensus 476 i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 555 (731)
++.+++|+.|++..+... ......+..+++|+.|.+++..- .. ..+..+++|+.|++++|......
T Consensus 137 ~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l----~~---~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLE-------RIEDDTFQATTSLQNLQLSSNRL----TH---VDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp TTTCTTCCEEECCSSCCC-------BCCTTTTSSCTTCCEEECCSSCC----SB---CCGGGCTTCSEEECCSSCCSEEE
T ss_pred hcCCCCCcEEECCCCccC-------ccChhhccCCCCCCEEECCCCcC----Cc---cccccccccceeecccccccccC
Confidence 366777777766443322 11223355566666666654211 00 01223344444444433220000
Q ss_pred ccC-------CcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc--c----------cC--CCCCCCCCCcceee
Q 039852 556 ETR-------KNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK--L----------RA--AASFGKMPSLEKLH 614 (731)
Q Consensus 556 ~~~-------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~--L----------~~--l~~l~~l~~L~~L~ 614 (731)
... ......... ...+++|+.|++++|.... .| ++... | .. ...++.+++|++|+
T Consensus 203 ~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTD-TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CCCcceEEECCCCeeeecc--ccccccccEEECCCCCCcc-cH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 000 000000000 0112345555555554443 22 11110 0 00 11245566677777
Q ss_pred eccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCC
Q 039852 615 IWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTT 694 (731)
Q Consensus 615 L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~ 694 (731)
|+++. ++.++... ..+|+|+.|+++++ .+..++... ..+++|++|++++| .+..+| +..++
T Consensus 279 L~~n~-l~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~--------~~l~~L~~L~L~~N-~i~~~~--~~~~~ 339 (390)
T 3o6n_A 279 ISNNR-LVALNLYG------QPIPTLKVLDLSHN-HLLHVERNQ--------PQFDRLENLYLDHN-SIVTLK--LSTHH 339 (390)
T ss_dssp CCSSC-CCEEECSS------SCCTTCCEEECCSS-CCCCCGGGH--------HHHTTCSEEECCSS-CCCCCC--CCTTC
T ss_pred CCCCc-CcccCccc------CCCCCCCEEECCCC-cceecCccc--------cccCcCCEEECCCC-ccceeC--chhhc
Confidence 76643 44444322 35677777777776 455544332 26788888888886 467776 56788
Q ss_pred CccEEEEccCc
Q 039852 695 TLKELRILMCG 705 (731)
Q Consensus 695 ~L~~L~l~~c~ 705 (731)
+|++|+++++|
T Consensus 340 ~L~~L~l~~N~ 350 (390)
T 3o6n_A 340 TLKNLTLSHND 350 (390)
T ss_dssp CCSEEECCSSC
T ss_pred cCCEEEcCCCC
Confidence 99999999877
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.5e-19 Score=187.91 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=167.9
Q ss_pred ccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
..+|..++++.+|++|+|++|.+..+|..++++.+|++|++++| .+..+|..++++++|++|++++|..+..+|..++.
T Consensus 94 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 94 PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 36888899999999999999999999999999999999999995 57799999999999999999998777888876554
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETR 558 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 558 (731)
.. ....+..+++|+.|.+++..- . ..+..+.++++|+.|++++|...
T Consensus 173 ~~----------------------~~~~~~~l~~L~~L~L~~n~l----~-~lp~~l~~l~~L~~L~L~~N~l~------ 219 (328)
T 4fcg_A 173 TD----------------------ASGEHQGLVNLQSLRLEWTGI----R-SLPASIANLQNLKSLKIRNSPLS------ 219 (328)
T ss_dssp EC-----------------------CCCEEESTTCCEEEEEEECC----C-CCCGGGGGCTTCCEEEEESSCCC------
T ss_pred cc----------------------chhhhccCCCCCEEECcCCCc----C-cchHhhcCCCCCCEEEccCCCCC------
Confidence 10 112244555566666554211 1 12234667788888999888761
Q ss_pred CcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCc
Q 039852 559 KNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFP 638 (731)
Q Consensus 559 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~ 638 (731)
.++..+..+++|++|++++|...+.+|. .++.+++|++|+|++|+.++.+|..+ ..++
T Consensus 220 ------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~----------~~~~l~~L~~L~L~~n~~~~~~p~~~------~~l~ 277 (328)
T 4fcg_A 220 ------ALGPAIHHLPKLEELDLRGCTALRNYPP----------IFGGRAPLKRLILKDCSNLLTLPLDI------HRLT 277 (328)
T ss_dssp ------CCCGGGGGCTTCCEEECTTCTTCCBCCC----------CTTCCCCCCEEECTTCTTCCBCCTTG------GGCT
T ss_pred ------cCchhhccCCCCCEEECcCCcchhhhHH----------HhcCCCCCCEEECCCCCchhhcchhh------hcCC
Confidence 1233456678999999999888775665 36778999999999998888887664 4789
Q ss_pred ccceeeccccccccccccccccccccccccCcccceeeecc
Q 039852 639 KLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKW 679 (731)
Q Consensus 639 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~ 679 (731)
+|+.|++++|+.+..+|.... .+++|+.+.+..
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~--------~L~~L~~l~l~~ 310 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIA--------QLPANCIILVPP 310 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGG--------GSCTTCEEECCG
T ss_pred CCCEEeCCCCCchhhccHHHh--------hccCceEEeCCH
Confidence 999999999988887776544 788888888865
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=195.29 Aligned_cols=263 Identities=19% Similarity=0.161 Sum_probs=179.8
Q ss_pred ccchhhhhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc-c
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG-I 476 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i 476 (731)
..+|..+. .++++|+|++|.++.++ ..+.++++|++|+|++|......|..|.++++|++|++++| .+..+|.+ +
T Consensus 24 ~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 100 (477)
T 2id5_A 24 VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVF 100 (477)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSS
T ss_pred CcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccc
Confidence 34665553 58999999999999884 67999999999999996533444778999999999999998 67778876 6
Q ss_pred CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcc
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEE 556 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 556 (731)
..+++|+.|++..+... ......+..+++|+.|.+.+. .........+.++++|+.|+++.|....
T Consensus 101 ~~l~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 101 TGLSNLTKLDISENKIV-------ILLDYMFQDLYNLKSLEVGDN----DLVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp TTCTTCCEEECTTSCCC-------EECTTTTTTCTTCCEEEECCT----TCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred cCCCCCCEEECCCCccc-------cCChhHccccccCCEEECCCC----ccceeChhhccCCCCCCEEECCCCcCcc---
Confidence 88999999987554332 223345778888999888762 2223334467788999999999987611
Q ss_pred cCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccc----
Q 039852 557 TRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVE---- 632 (731)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~---- 632 (731)
.....+..+++|+.|++++|.... ++. ..++.+++|++|++++|+.+..++...+...
T Consensus 167 --------~~~~~l~~l~~L~~L~l~~n~i~~-~~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 228 (477)
T 2id5_A 167 --------IPTEALSHLHGLIVLRLRHLNINA-IRD---------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228 (477)
T ss_dssp --------CCHHHHTTCTTCCEEEEESCCCCE-ECT---------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred --------cChhHhcccCCCcEEeCCCCcCcE-eCh---------hhcccCcccceeeCCCCccccccCcccccCccccE
Confidence 112335567889999999888766 432 1355667777777776665555554332100
Q ss_pred --------------ccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCC-CCCCCCCCCcc
Q 039852 633 --------------IIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL-PDYIHQTTTLK 697 (731)
Q Consensus 633 --------------~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l-p~~~~~l~~L~ 697 (731)
....+++|+.|+++++ .+..++.. .+..+++|++|++++|. +..+ |..+..+++|+
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGS-------MLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLR 299 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTT-------SCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCC
T ss_pred EECcCCcccccCHHHhcCccccCeeECCCC-cCCccChh-------hccccccCCEEECCCCc-cceECHHHhcCcccCC
Confidence 0123455555555554 23333222 23367888888888864 4444 66677888999
Q ss_pred EEEEccCc
Q 039852 698 ELRILMCG 705 (731)
Q Consensus 698 ~L~l~~c~ 705 (731)
+|++++|.
T Consensus 300 ~L~L~~N~ 307 (477)
T 2id5_A 300 VLNVSGNQ 307 (477)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 99988874
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.6e-19 Score=204.05 Aligned_cols=268 Identities=16% Similarity=0.157 Sum_probs=144.1
Q ss_pred cchhh-hhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccccc-
Q 039852 400 KIPRN-IEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVVG- 475 (731)
Q Consensus 400 ~lp~~-i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~- 475 (731)
.+|.. +.++++|++|+|++|.+..+|. .++.+.+|++|+|++|. +..+|. .++++++|++|++++| .+..+|.+
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 142 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 142 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHH
Confidence 34443 5667777777777777776654 67777777777777744 444443 3567777777777777 55566665
Q ss_pred cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCc
Q 039852 476 IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGE 555 (731)
Q Consensus 476 i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 555 (731)
++.+++|+.|++..+... ......+..+++|+.|.+++..- ... .+..+++|+.|++++|......
T Consensus 143 ~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~N~l----~~~---~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLE-------RIEDDTFQATTSLQNLQLSSNRL----THV---DLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp TTTCTTCCEEECCSSCCC-------BCCTTTTTTCTTCCEEECTTSCC----SBC---CGGGCTTCSEEECCSSCCSEEE
T ss_pred hccCCCCCEEEeeCCcCC-------CCChhhhhcCCcCcEEECcCCCC----CCc---ChhhhhhhhhhhcccCcccccc
Confidence 366777777766544322 22223455666666666654211 010 1223344444444433220000
Q ss_pred ccC-------CcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc--c----------cC--CCCCCCCCCcceee
Q 039852 556 ETR-------KNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK--L----------RA--AASFGKMPSLEKLH 614 (731)
Q Consensus 556 ~~~-------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~--L----------~~--l~~l~~l~~L~~L~ 614 (731)
... .......... ..+++|+.|++++|.+.+ . .++..+ | .. ...++.+++|++|+
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp CCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCC-C-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 000 0000000000 012345555555544443 2 222111 0 00 11355667777777
Q ss_pred eccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCC
Q 039852 615 IWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTT 694 (731)
Q Consensus 615 L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~ 694 (731)
|++|. ++.++... ..+|+|+.|+++++ .+..++... ..+++|++|++++| .+..+| +..++
T Consensus 285 Ls~N~-l~~l~~~~------~~l~~L~~L~Ls~N-~l~~i~~~~--------~~l~~L~~L~L~~N-~l~~~~--~~~~~ 345 (597)
T 3oja_B 285 ISNNR-LVALNLYG------QPIPTLKVLDLSHN-HLLHVERNQ--------PQFDRLENLYLDHN-SIVTLK--LSTHH 345 (597)
T ss_dssp CTTSC-CCEEECSS------SCCTTCCEEECCSS-CCCCCGGGH--------HHHTTCSEEECCSS-CCCCCC--CCTTC
T ss_pred CCCCC-CCCCCccc------ccCCCCcEEECCCC-CCCccCccc--------ccCCCCCEEECCCC-CCCCcC--hhhcC
Confidence 77643 45554332 35777888888776 455554332 27889999999886 466666 56788
Q ss_pred CccEEEEccCch
Q 039852 695 TLKELRILMCGL 706 (731)
Q Consensus 695 ~L~~L~l~~c~~ 706 (731)
+|+.|++++||-
T Consensus 346 ~L~~L~l~~N~~ 357 (597)
T 3oja_B 346 TLKNLTLSHNDW 357 (597)
T ss_dssp CCSEEECCSSCE
T ss_pred CCCEEEeeCCCC
Confidence 999999998873
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=4.7e-19 Score=205.00 Aligned_cols=263 Identities=12% Similarity=0.084 Sum_probs=133.5
Q ss_pred cchhhhhccc-------cccEEeecCCccccccc--cccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCcccc
Q 039852 400 KIPRNIEKLV-------HLRYLNLSGQDIVQLSE--TLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLR 470 (731)
Q Consensus 400 ~lp~~i~~L~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 470 (731)
.+|..++.+. +|++|+|++|.+..+|. .++++++|++|++++|. +..+| .++.+++|++|++++| .+.
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N-~l~ 608 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIE 608 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSS-CCS
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCC-ccc
Confidence 4555555554 66666666666666666 66666666666666633 44666 5666666666666666 344
Q ss_pred ccccccCCCCC-CCccCceEeCCCCCcCCCcccccccccCCC--CCCcccccCCCCC-----------------------
Q 039852 471 YMVVGIGRLTG-LRTLGEFHVSGGGGVDGRKACRLESLKNLE--HLQVCGIRRLGDV----------------------- 524 (731)
Q Consensus 471 ~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~--~L~~L~i~~l~~~----------------------- 524 (731)
.+|..++.+++ |+.|++..+.... ....+..+. +|+.|.+++..-.
T Consensus 609 ~lp~~l~~l~~~L~~L~Ls~N~L~~--------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 609 EIPEDFCAFTDQVEGLGFSHNKLKY--------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CCCTTSCEECTTCCEEECCSSCCCS--------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cchHHHhhccccCCEEECcCCCCCc--------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 56666666666 6666554333221 111112111 2333444331110
Q ss_pred --CChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcC--------CCCCCCceEEEeeecCCCCCccch
Q 039852 525 --SDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEAL--------RPPLDLKKLEIRYYRGNTVFRSLL 594 (731)
Q Consensus 525 --~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~L~~L~l~~~~~~~~lp~~~ 594 (731)
+.+.......+..+++|+.|+|+.|... .++..+ ..+++|+.|+|++|.+.. +|..+
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~------------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l 747 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNLMT------------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF 747 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCCCS------------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGG
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCcCC------------ccChHHhccccccccccCCccEEECCCCCCcc-chHHh
Confidence 0000111111123444555555544431 011111 111255555555555443 44321
Q ss_pred hhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccce
Q 039852 595 VQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSS 674 (731)
Q Consensus 595 ~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~ 674 (731)
. ...+++|+.|+|++|. ++.+|..+ ..+++|+.|++++++.+..-.. .+..+..+..+++|++
T Consensus 748 ~--------~~~l~~L~~L~Ls~N~-L~~lp~~l------~~L~~L~~L~Ls~N~~ls~N~l--~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 748 R--------ATTLPYLSNMDVSYNC-FSSFPTQP------LNSSQLKAFGIRHQRDAEGNRI--LRQWPTGITTCPSLIQ 810 (876)
T ss_dssp S--------TTTCTTCCEEECCSSC-CSSCCCGG------GGCTTCCEEECCCCBCTTCCBC--CCCCCTTGGGCSSCCE
T ss_pred h--------hccCCCcCEEEeCCCC-CCccchhh------hcCCCCCEEECCCCCCcccccc--cccChHHHhcCCCCCE
Confidence 1 0256777777777654 44455443 3567777777766431110000 0011123447889999
Q ss_pred eeecccccCcCCCCCCCCCCCccEEEEccCch
Q 039852 675 FEIKWCPKLKALPDYIHQTTTLKELRILMCGL 706 (731)
Q Consensus 675 L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 706 (731)
|++++|. ++.+|..+. ++|+.|+|++|+.
T Consensus 811 L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 811 LQIGSND-IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp EECCSSC-CCBCCSCCC--SSSCEEECCSCTT
T ss_pred EECCCCC-CCccCHhhc--CCCCEEECCCCCC
Confidence 9998874 588887654 6899999998873
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=8.6e-19 Score=191.75 Aligned_cols=275 Identities=17% Similarity=0.139 Sum_probs=149.0
Q ss_pred hhhhhccccccEEeecCCccc-cc-cccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc--cC
Q 039852 402 PRNIEKLVHLRYLNLSGQDIV-QL-SETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG--IG 477 (731)
Q Consensus 402 p~~i~~L~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~--i~ 477 (731)
|..|+++++|++|+|++|.+. .+ |..+.++++|++|++++|......|..++++++|++|++++|.....+|.. ++
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence 555666666666666666654 33 344666666666666664433333555666666666666666322223333 55
Q ss_pred CCCCCCccCceEeCCCCCcCCCccccccc-ccCCCCCCcccccCCCCCCChhhhh-------------------------
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLES-LKNLEHLQVCGIRRLGDVSDVGEAK------------------------- 531 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L~i~~l~~~~~~~~~~------------------------- 531 (731)
.+++|++|++..+.... ..... +.++++|+.|++++..-........
T Consensus 127 ~l~~L~~L~L~~n~l~~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKK-------IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp TCTTCCEEECCSSBCCS-------CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred CcccCCEEECCCCccCc-------cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence 66666666554433221 11111 4455555555554321100000000
Q ss_pred -----hccccccccCCceEEEEecCCCCcccCCcccHHHHhhc---------------------------------C--C
Q 039852 532 -----RLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEA---------------------------------L--R 571 (731)
Q Consensus 532 -----~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~---------------------------------l--~ 571 (731)
...+..+++|+.|++++|...+. ........ + .
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKES-------MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHH-------HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG
T ss_pred ccccccccccccceeeeEecCCCccccc-------chhhhhccccccceeeEeeccccccccccchhhhccCcccccccc
Confidence 00112334566666665543100 00000000 0 0
Q ss_pred CCCCCceEEEeeecCCCCCccchhhc--c----------cC--CCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 572 PPLDLKKLEIRYYRGNTVFRSLLVQK--L----------RA--AASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 572 ~~~~L~~L~l~~~~~~~~lp~~~~~~--L----------~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
..++|++|++++|...+..|.++..+ | .. ...++.+++|++|+|++|. ++.++...+ ..+
T Consensus 273 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----~~l 346 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMF-----ENL 346 (455)
T ss_dssp TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGG-----TTC
T ss_pred cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHh-----cCc
Confidence 12456666666666555334443321 1 11 1246778888888888764 566654433 467
Q ss_pred cccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCC-CCCCCCccEEEEccCc
Q 039852 638 PKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDY-IHQTTTLKELRILMCG 705 (731)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~-~~~l~~L~~L~l~~c~ 705 (731)
++|++|+++++ .+..+... .+..+++|++|++++| +++.+|.. +..+++|++|+++++|
T Consensus 347 ~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 347 DKLEVLDLSYN-HIRALGDQ-------SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSS-CCCEECTT-------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCC-cccccChh-------hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 88999999887 45444322 2337899999999995 67888754 5789999999999755
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=2.2e-19 Score=208.91 Aligned_cols=276 Identities=17% Similarity=0.075 Sum_probs=148.0
Q ss_pred cchhhhhccccccEEeecCCccc-ccccc-ccCCCceeEEeccCCcCcccCcccccCCC-Ccceeec-------------
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIV-QLSET-LCELYILEKLDISYCMDLEELPEGIKKLI-NMRHLLN------------- 463 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~i~~L~-~L~~L~l------------- 463 (731)
.+|..|+++++|++|+|++|.+. .+|.. ++++++|++|++++|.....+|..+..+. +|++|++
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 45555566666666666666554 55544 55555566666655443334555554444 4444444
Q ss_pred -------------cCCccccccccccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhh
Q 039852 464 -------------DGTDTLRYMVVGIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEA 530 (731)
Q Consensus 464 -------------~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~ 530 (731)
++|.....+|..++++++|+.|++..+... +..+..+..+++|+.|.+.+.. ....
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-------~~~p~~l~~l~~L~~L~L~~n~----l~~~ 457 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS-------GTIPSSLGSLSKLRDLKLWLNM----LEGE 457 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE-------SCCCGGGGGCTTCCEEECCSSC----CCSC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc-------CcccHHHhcCCCCCEEECCCCc----ccCc
Confidence 444222244445555555555544332211 1223445555566666555422 1222
Q ss_pred hhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc--c----------
Q 039852 531 KRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK--L---------- 598 (731)
Q Consensus 531 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~--L---------- 598 (731)
.+..+..+++|+.|++++|.. ....+..+..+++|++|++++|.+.+.+|.|+..+ |
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDL-----------TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCC-----------CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCHHHcCCCCceEEEecCCcc-----------cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 333455666677777766655 11233445566777777777777776577766542 1
Q ss_pred -cCCC-CCCCCCCcceeeeccccCceEeCccccccc--------------------------------------------
Q 039852 599 -RAAA-SFGKMPSLEKLHIWGMKRVKKVGDEFLGVE-------------------------------------------- 632 (731)
Q Consensus 599 -~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~-------------------------------------------- 632 (731)
..+| .++.+++|++|+|++|.-...+|..++...
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 1122 245566666666666554434444322100
Q ss_pred --------------------ccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCC
Q 039852 633 --------------------IIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQ 692 (731)
Q Consensus 633 --------------------~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~ 692 (731)
....+++|+.|+++++.--..+|. .++.+++|+.|++++|.--..+|..+..
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--------~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--------EIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG--------GGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCH--------HHhccccCCEEeCcCCccCCCCChHHhC
Confidence 011234455555555421122222 2447788888888887655678887888
Q ss_pred CCCccEEEEccCc
Q 039852 693 TTTLKELRILMCG 705 (731)
Q Consensus 693 l~~L~~L~l~~c~ 705 (731)
+++|+.|++++|.
T Consensus 679 L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 679 LRGLNILDLSSNK 691 (768)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc
Confidence 8888888888775
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=2.9e-20 Score=192.20 Aligned_cols=249 Identities=14% Similarity=0.062 Sum_probs=140.2
Q ss_pred ccccEEeecCCccc---cccccccCCCceeEEeccC-CcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 409 VHLRYLNLSGQDIV---QLSETLCELYILEKLDISY-CMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~-c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
.+++.|+|+++.+. .+|..++++++|++|++++ +.....+|..++++++|++|++++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35666666666665 4666666666666666663 3333456666666666666666666333355666666666666
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccc-cCCceEEEEecCCCCcccCCcccH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK-YLSYLRLEFDKKKEGEETRKNEDD 563 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~~~~~~~~~ 563 (731)
|++..+... +.....+..+++|+.|.+++. ......+..+..+. +|+.|++++|.. .
T Consensus 130 L~Ls~N~l~-------~~~p~~~~~l~~L~~L~L~~N----~l~~~~p~~l~~l~~~L~~L~L~~N~l-----------~ 187 (313)
T 1ogq_A 130 LDFSYNALS-------GTLPPSISSLPNLVGITFDGN----RISGAIPDSYGSFSKLFTSMTISRNRL-----------T 187 (313)
T ss_dssp EECCSSEEE-------SCCCGGGGGCTTCCEEECCSS----CCEEECCGGGGCCCTTCCEEECCSSEE-----------E
T ss_pred EeCCCCccC-------CcCChHHhcCCCCCeEECcCC----cccCcCCHHHhhhhhcCcEEECcCCee-----------e
Confidence 655433221 122344555666666665542 12222333445555 677777766654 1
Q ss_pred HHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccccee
Q 039852 564 QLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSL 643 (731)
Q Consensus 564 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L 643 (731)
...+..+..++ |++|++++|.+.+..|. .++.+++|++|+|+++. ++..+..+ ..+++|++|
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~L~~N~-l~~~~~~~------~~l~~L~~L 249 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASV----------LFGSDKNTQKIHLAKNS-LAFDLGKV------GLSKNLNGL 249 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGG----------GCCTTSCCSEEECCSSE-ECCBGGGC------CCCTTCCEE
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCH----------HHhcCCCCCEEECCCCc-eeeecCcc------cccCCCCEE
Confidence 11222233333 77777777766542333 24567777777777654 22222221 356777777
Q ss_pred ecccccccc-ccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCchh
Q 039852 644 LIEDLLELE-EWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCGLL 707 (731)
Q Consensus 644 ~l~~~~~l~-~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L 707 (731)
+++++. +. .++.. +..+++|++|++++|+--+.+|.. ..+++|+.++++++|.+
T Consensus 250 ~Ls~N~-l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 250 DLRNNR-IYGTLPQG--------LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCSSC-CEECCCGG--------GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred ECcCCc-ccCcCChH--------HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 777763 32 33322 226777777777776544566764 66777777777777644
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=8.4e-19 Score=184.47 Aligned_cols=243 Identities=19% Similarity=0.244 Sum_probs=116.8
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
++.+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+..+++|++|++++| .+..+|. +..+++|+.
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeE
Confidence 4445555555555555555544 555555555555553 344443 3555555555555554 3333333 444444444
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCC------------------ChhhhhhccccccccCCceEE
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVS------------------DVGEAKRLELDKKKYLSYLRL 546 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~------------------~~~~~~~~~l~~~~~L~~L~L 546 (731)
|++..+.... .+..+..+++|+.|.+.+..... ...... .+..+++|+.|++
T Consensus 137 L~l~~n~~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l 206 (347)
T 4fmz_A 137 LNLGANHNLS--------DLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTA 206 (347)
T ss_dssp EECTTCTTCC--------CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG--GGGGCTTCCEEEC
T ss_pred EECCCCCCcc--------cccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc--cccCCCccceeec
Confidence 4433221111 12223444444444443321100 000000 1334455555555
Q ss_pred EEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCc
Q 039852 547 EFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGD 626 (731)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~ 626 (731)
++|.... ...+..+++|++|++++|.... +|. ++.+++|++|++++|. ++.++.
T Consensus 207 ~~n~l~~-------------~~~~~~~~~L~~L~l~~n~l~~-~~~-----------~~~l~~L~~L~l~~n~-l~~~~~ 260 (347)
T 4fmz_A 207 YVNQITD-------------ITPVANMTRLNSLKIGNNKITD-LSP-----------LANLSQLTWLEIGTNQ-ISDINA 260 (347)
T ss_dssp CSSCCCC-------------CGGGGGCTTCCEEECCSSCCCC-CGG-----------GTTCTTCCEEECCSSC-CCCCGG
T ss_pred ccCCCCC-------------CchhhcCCcCCEEEccCCccCC-Ccc-----------hhcCCCCCEEECCCCc-cCCChh
Confidence 5444310 0113345666666666666554 332 4566777777777653 433321
Q ss_pred ccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 627 EFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 627 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
...+++|+.|+++++ .+..++. +..+++|++|++++|+--...|..+..+++|++|++++|+
T Consensus 261 -------~~~l~~L~~L~l~~n-~l~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 261 -------VKDLTKLKMLNVGSN-QISDISV---------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -------GTTCTTCCEEECCSS-CCCCCGG---------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -------HhcCCCcCEEEccCC-ccCCChh---------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 245677777777766 4444421 1256667777776664333333445556667777776665
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.4e-19 Score=187.02 Aligned_cols=240 Identities=14% Similarity=0.078 Sum_probs=185.5
Q ss_pred cchhhhhccccccEEeecC-Cccc-cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 400 KIPRNIEKLVHLRYLNLSG-QDIV-QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
.+|..|+++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 5788999999999999995 7776 7899999999999999999665558999999999999999999954447888999
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCC-CCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcc
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLE-HLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEE 556 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 556 (731)
.+++|+.|++..+... +..+..+..+. +|+.|.+++. ......+..+..+. |+.|++++|..
T Consensus 147 ~l~~L~~L~L~~N~l~-------~~~p~~l~~l~~~L~~L~L~~N----~l~~~~~~~~~~l~-L~~L~Ls~N~l----- 209 (313)
T 1ogq_A 147 SLPNLVGITFDGNRIS-------GAIPDSYGSFSKLFTSMTISRN----RLTGKIPPTFANLN-LAFVDLSRNML----- 209 (313)
T ss_dssp GCTTCCEEECCSSCCE-------EECCGGGGCCCTTCCEEECCSS----EEEEECCGGGGGCC-CSEEECCSSEE-----
T ss_pred cCCCCCeEECcCCccc-------CcCCHHHhhhhhcCcEEECcCC----eeeccCChHHhCCc-ccEEECcCCcc-----
Confidence 9999999988654432 23456677777 8888888762 22333344555665 99999998876
Q ss_pred cCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccccc
Q 039852 557 TRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIA 636 (731)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 636 (731)
....+..+..+++|+.|++++|.+.+.+| .++.+++|++|+|++|.-...+|..+ ..
T Consensus 210 ------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~p~~l------~~ 266 (313)
T 1ogq_A 210 ------EGDASVLFGSDKNTQKIHLAKNSLAFDLG-----------KVGLSKNLNGLDLRNNRIYGTLPQGL------TQ 266 (313)
T ss_dssp ------EECCGGGCCTTSCCSEEECCSSEECCBGG-----------GCCCCTTCCEEECCSSCCEECCCGGG------GG
T ss_pred ------cCcCCHHHhcCCCCCEEECCCCceeeecC-----------cccccCCCCEEECcCCcccCcCChHH------hc
Confidence 12345667788999999999998876222 35678999999999876433555544 57
Q ss_pred CcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCC
Q 039852 637 FPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD 688 (731)
Q Consensus 637 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~ 688 (731)
+++|+.|+++++.--..+|.. . .+++|+.|++.+++.+...|.
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~-~--------~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQG-G--------NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCS-T--------TGGGSCGGGTCSSSEEESTTS
T ss_pred CcCCCEEECcCCcccccCCCC-c--------cccccChHHhcCCCCccCCCC
Confidence 899999999998433355543 2 799999999999988877653
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=3.6e-19 Score=202.38 Aligned_cols=253 Identities=14% Similarity=0.165 Sum_probs=131.6
Q ss_pred cchh--hhhccccccEEeecCCccc-cccccccCCCceeEEeccCCcCcccCcccccCCCC-cceeeccCCccccccccc
Q 039852 400 KIPR--NIEKLVHLRYLNLSGQDIV-QLSETLCELYILEKLDISYCMDLEELPEGIKKLIN-MRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 400 ~lp~--~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~~p~~ 475 (731)
.+|. .++++++|++|+|++|.+. .+| .++++.+|++|++++| .+..+|..+..+++ |++|++++| .+..+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS-CCSSCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC-cCcccchh
Confidence 4444 4555555555555555544 444 4445555555555542 23344544555554 555555554 23344444
Q ss_pred cCCCC--CCCccCceEeCCCCCcCCCccccccccc-------CCCCCCcccccCCCCCCChhhhhhccccccccCCceEE
Q 039852 476 IGRLT--GLRTLGEFHVSGGGGVDGRKACRLESLK-------NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRL 546 (731)
Q Consensus 476 i~~L~--~L~~L~~~~~~~~~~~~~~~~~~~~~l~-------~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 546 (731)
++.++ +|+.|++..+... +..+..++ .+.+|+.|.+++..- .......+..+++|+.|++
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~-------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l----~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIG-------SVDGKNFDPLDPTPFKGINVSSINLSNNQI----SKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTT-------TTTTCSSCTTCSSCCCCCCEEEEECCSSCC----CSCCTHHHHTTCCCSEEEC
T ss_pred hhhcccCccCEEECcCCcCC-------CcchhhhcccccccccCCCCCEEECcCCcc----CcCCHHHHccCCCCCEEEC
Confidence 43332 4444443322221 11112222 333444444443211 1111112233556666666
Q ss_pred EEecCCCCcccCCcccHHHHhhc--------CCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccc
Q 039852 547 EFDKKKEGEETRKNEDDQLLLEA--------LRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGM 618 (731)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~ 618 (731)
+.|... .++.. +..+++|++|++++|.+.. +|..+. ...+++|++|+|++|
T Consensus 465 s~N~l~------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~--------~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 465 MGNMLT------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFR--------ATTLPYLVGIDLSYN 523 (636)
T ss_dssp CSSCCS------------BCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGS--------TTTCTTCCEEECCSS
T ss_pred CCCCCC------------CcCHHHhccccccccccCCccEEECcCCcCCc-cChhhh--------hccCCCcCEEECCCC
Confidence 655441 01111 1112266666666666654 554321 026788888888886
Q ss_pred cCceEeCcccccccccccCcccceeeccccc------cccccccccccccccccccCcccceeeecccccCcCCCCCCCC
Q 039852 619 KRVKKVGDEFLGVEIIIAFPKLKSLLIEDLL------ELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQ 692 (731)
Q Consensus 619 ~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~------~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~ 692 (731)
. ++.+|..+ ..+++|+.|+++++. -...++. .+..+++|++|++++|. ++.+|..+.
T Consensus 524 ~-l~~ip~~~------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--------~l~~l~~L~~L~Ls~N~-l~~ip~~~~- 586 (636)
T 4eco_A 524 S-FSKFPTQP------LNSSTLKGFGIRNQRDAQGNRTLREWPE--------GITLCPSLTQLQIGSND-IRKVNEKIT- 586 (636)
T ss_dssp C-CSSCCCGG------GGCSSCCEEECCSCBCTTCCBCCCCCCT--------TGGGCSSCCEEECCSSC-CCBCCSCCC-
T ss_pred C-CCCcChhh------hcCCCCCEEECCCCcccccCcccccChH--------HHhcCCCCCEEECCCCc-CCccCHhHh-
Confidence 5 44466554 467888888886543 1222322 24478999999999974 599998765
Q ss_pred CCCccEEEEccCc
Q 039852 693 TTTLKELRILMCG 705 (731)
Q Consensus 693 l~~L~~L~l~~c~ 705 (731)
++|+.|++++|+
T Consensus 587 -~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 -PNISVLDIKDNP 598 (636)
T ss_dssp -TTCCEEECCSCT
T ss_pred -CcCCEEECcCCC
Confidence 799999999986
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=9.6e-19 Score=184.01 Aligned_cols=239 Identities=16% Similarity=0.205 Sum_probs=147.8
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
+..+++|++|+|++|.+..+|. +.++++|++|++++|..+..++. +..+++|++|++++| .+..++. +..+++|+.
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCE
Confidence 4445555555555555444443 44455555555555443333332 455555555555554 2333322 444555555
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+... .+..+..+++|+.+.+.+..- . ... .+..+++|+.|++++|....
T Consensus 182 L~l~~n~l~---------~~~~~~~l~~L~~L~l~~n~l-~---~~~--~~~~~~~L~~L~l~~n~l~~----------- 235 (347)
T 4fmz_A 182 LSLNYNQIE---------DISPLASLTSLHYFTAYVNQI-T---DIT--PVANMTRLNSLKIGNNKITD----------- 235 (347)
T ss_dssp EECTTSCCC---------CCGGGGGCTTCCEEECCSSCC-C---CCG--GGGGCTTCCEEECCSSCCCC-----------
T ss_pred EEccCCccc---------ccccccCCCccceeecccCCC-C---CCc--hhhcCCcCCEEEccCCccCC-----------
Confidence 544322211 222355666666666655221 1 111 16788999999999987611
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceee
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLL 644 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~ 644 (731)
...+..+++|++|++++|.... ++ .++.+++|++|++++|. ++.++. ...+++|+.|+
T Consensus 236 --~~~~~~l~~L~~L~l~~n~l~~-~~-----------~~~~l~~L~~L~l~~n~-l~~~~~-------~~~l~~L~~L~ 293 (347)
T 4fmz_A 236 --LSPLANLSQLTWLEIGTNQISD-IN-----------AVKDLTKLKMLNVGSNQ-ISDISV-------LNNLSQLNSLF 293 (347)
T ss_dssp --CGGGTTCTTCCEEECCSSCCCC-CG-----------GGTTCTTCCEEECCSSC-CCCCGG-------GGGCTTCSEEE
T ss_pred --CcchhcCCCCCEEECCCCccCC-Ch-----------hHhcCCCcCEEEccCCc-cCCChh-------hcCCCCCCEEE
Confidence 1126678999999999998766 43 35778999999999874 555532 25789999999
Q ss_pred ccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 645 IEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 645 l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
+++|. +....... +..+|+|++|++++|+ +..++. +..+++|++|++++|+
T Consensus 294 L~~n~-l~~~~~~~-------l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 294 LNNNQ-LGNEDMEV-------IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSC-CCGGGHHH-------HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CcCCc-CCCcChhH-------hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99983 44333221 2379999999999986 777766 7789999999999997
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=192.08 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=63.4
Q ss_pred hhhhhhhccCCcHHHHHHHHHhhcccC----CCcCCccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCC
Q 039852 367 LTPLRLSYNDLPSRVKRCFSYCAIFVN----RSSLTPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYC 442 (731)
Q Consensus 367 ~~~L~lsy~~L~~~~k~cf~~~~~f~~----rs~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c 442 (731)
++.|.++++.+.......|..+..... .+.+....|..|+++++|++|+|++|.++.+|.. .+.+|++|++++|
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCC
Confidence 445667777665433333332221111 2233334467788888888888888888888776 7888888888885
Q ss_pred cCcc-cCcccccCCCCcceeeccCC
Q 039852 443 MDLE-ELPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 443 ~~l~-~lp~~i~~L~~L~~L~l~~~ 466 (731)
.... .+|..++++++|++|++++|
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred ccccccchhhhccCCcceEEEecCc
Confidence 4332 35677888888888888776
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=1.7e-18 Score=196.67 Aligned_cols=269 Identities=16% Similarity=0.132 Sum_probs=161.5
Q ss_pred hhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc-cCCCC
Q 039852 402 PRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLT 480 (731)
Q Consensus 402 p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~ 480 (731)
+..|+.+++|++|+|++|.++.+|..++++++|++|++++|......|..+..+++|++|++++|.....+|.+ ++.++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 44578888888888888888888888888888888888885533344667888888888888888544456655 77788
Q ss_pred CCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCc
Q 039852 481 GLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKN 560 (731)
Q Consensus 481 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 560 (731)
+|+.|++..+.... .......+..+++|+.|.+++. .........+..+++|+.|++++|....
T Consensus 351 ~L~~L~l~~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~------- 414 (606)
T 3t6q_A 351 NLRELDLSHDDIET-----SDCCNLQLRNLSHLQSLNLSYN----EPLSLKTEAFKECPQLELLDLAFTRLKV------- 414 (606)
T ss_dssp TCCEEECCSSCCCE-----EEESTTTTTTCTTCCEEECCSC----SCEEECTTTTTTCTTCSEEECTTCCEEC-------
T ss_pred cCCEEECCCCcccc-----ccCcchhcccCCCCCEEECCCC----cCCcCCHHHhcCCccCCeEECCCCcCCC-------
Confidence 88888765443321 0111345667777777777652 2223333455667777777777665410
Q ss_pred ccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc--c----------c-----CCCCCCCCCCcceeeeccccCceE
Q 039852 561 EDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK--L----------R-----AAASFGKMPSLEKLHIWGMKRVKK 623 (731)
Q Consensus 561 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~--L----------~-----~l~~l~~l~~L~~L~L~~~~~l~~ 623 (731)
......+..+++|++|++++|......|.++..+ | . ....++.+++|++|+|++|. ++.
T Consensus 415 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 490 (606)
T 3t6q_A 415 ---KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSS 490 (606)
T ss_dssp ---CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCE
T ss_pred ---cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCc
Confidence 0011124455667777777666555233332211 0 0 00124556666666666654 444
Q ss_pred eCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCC-CCCCCCCCccEEEEc
Q 039852 624 VGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP-DYIHQTTTLKELRIL 702 (731)
Q Consensus 624 i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~l~ 702 (731)
++...+ ..+++|+.|+++++ .+...... .+..+++| +|++++| .+..+| ..+..+++|+.|+++
T Consensus 491 ~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~-------~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 491 IDQHAF-----TSLKMMNHVDLSHN-RLTSSSIE-------ALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp ECTTTT-----TTCTTCCEEECCSS-CCCGGGGG-------GGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECT
T ss_pred cChhhh-----ccccCCCEEECCCC-ccCcCChh-------HhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCC
Confidence 433222 35666777777666 33332221 12366777 7777776 344443 445667788888888
Q ss_pred cCc
Q 039852 703 MCG 705 (731)
Q Consensus 703 ~c~ 705 (731)
+||
T Consensus 556 ~N~ 558 (606)
T 3t6q_A 556 QNP 558 (606)
T ss_dssp TCC
T ss_pred CCC
Confidence 766
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=3.3e-18 Score=182.99 Aligned_cols=230 Identities=14% Similarity=0.114 Sum_probs=145.6
Q ss_pred chhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccc-cccC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMV-VGIG 477 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p-~~i~ 477 (731)
.|..|+.+++|++|+|++|.+..+|. .++++++|++|++++| .+..+|.. +.++++|++|++++| .+..++ ..++
T Consensus 85 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 162 (390)
T 3o6n_A 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ 162 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTS
T ss_pred ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhcc
Confidence 34578899999999999999887754 5789999999999994 57788877 488999999999988 445554 4588
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCC----------------CCCCcccccCCCCC-----------------
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNL----------------EHLQVCGIRRLGDV----------------- 524 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L----------------~~L~~L~i~~l~~~----------------- 524 (731)
.+++|+.|++..+.... ..+..+++| .+|+.|.+++..-.
T Consensus 163 ~l~~L~~L~l~~n~l~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTH-------VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235 (390)
T ss_dssp SCTTCCEEECCSSCCSB-------CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS
T ss_pred CCCCCCEEECCCCcCCc-------cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCC
Confidence 88888888775543321 111111111 12222222221000
Q ss_pred CChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCC
Q 039852 525 SDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASF 604 (731)
Q Consensus 525 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l 604 (731)
+.... ...+..+++|+.|++++|.. ....+..+..+++|++|++++|.+.. +|. ..
T Consensus 236 n~l~~--~~~l~~l~~L~~L~Ls~n~l-----------~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~----------~~ 291 (390)
T 3o6n_A 236 NNLTD--TAWLLNYPGLVEVDLSYNEL-----------EKIMYHPFVKMQRLERLYISNNRLVA-LNL----------YG 291 (390)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCC-----------CEEESGGGTTCSSCCEEECCSSCCCE-EEC----------SS
T ss_pred CCCcc--cHHHcCCCCccEEECCCCcC-----------CCcChhHccccccCCEEECCCCcCcc-cCc----------cc
Confidence 00000 01233445555555555543 01122334445566666666655544 332 24
Q ss_pred CCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccc
Q 039852 605 GKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCP 681 (731)
Q Consensus 605 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~ 681 (731)
+.+|+|++|+|++|. ++.++..+ ..+++|+.|+++++ .+..++. ..+++|++|++++++
T Consensus 292 ~~l~~L~~L~L~~n~-l~~~~~~~------~~l~~L~~L~L~~N-~i~~~~~----------~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNH-LLHVERNQ------PQFDRLENLYLDHN-SIVTLKL----------STHHTLKNLTLSHND 350 (390)
T ss_dssp SCCTTCCEEECCSSC-CCCCGGGH------HHHTTCSEEECCSS-CCCCCCC----------CTTCCCSEEECCSSC
T ss_pred CCCCCCCEEECCCCc-ceecCccc------cccCcCCEEECCCC-ccceeCc----------hhhccCCEEEcCCCC
Confidence 568999999999974 66676554 46899999999998 4665542 278999999999975
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=1.3e-18 Score=197.60 Aligned_cols=87 Identities=23% Similarity=0.172 Sum_probs=51.5
Q ss_pred hhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCc-ccccCCCCcceeeccCCcccc-ccccccCC
Q 039852 402 PRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELP-EGIKKLINMRHLLNDGTDTLR-YMVVGIGR 478 (731)
Q Consensus 402 p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~ 478 (731)
|..|+++++|++|+|++|.+..+ |..+++|++|++|++++|. +..+| ..++++++|++|++++|.... .+|..+++
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhh
Confidence 45566666666666666666655 5556666666666666643 43333 456666666666666663221 35666666
Q ss_pred CCCCCccCceE
Q 039852 479 LTGLRTLGEFH 489 (731)
Q Consensus 479 L~~L~~L~~~~ 489 (731)
+++|+.|++..
T Consensus 152 l~~L~~L~Ls~ 162 (606)
T 3vq2_A 152 LTNLVHVDLSY 162 (606)
T ss_dssp CTTCCEEECCS
T ss_pred cCCCCEEEccC
Confidence 66666665543
No 26
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.75 E-value=2.5e-19 Score=152.33 Aligned_cols=81 Identities=27% Similarity=0.427 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhhh--ccccHHHHHHHHHHHHHHhhHHHHHH
Q 039852 4 AIVSTILEQLISLAAKEITQHVMLVTGVEKEVKSLTSHLQAIQAVLNDAEEK--QVKDKAVRRWLGRLNYASYDIEDVLD 81 (731)
Q Consensus 4 ~~v~~~~~kl~~~~~~~l~~~~~~~~~v~~~i~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~lr~~ayd~eD~lD 81 (731)
|+|+++++||++ ++.+|+.++.||++++++|+++|++|+++|.+|+.+ +.++++++.|+++||++|||+|||||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999 999999999999999999999999999999999998 56799999999999999999999999
Q ss_pred HHHHHHH
Q 039852 82 EWITARR 88 (731)
Q Consensus 82 ~~~~~~~ 88 (731)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999863
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=2.6e-18 Score=187.93 Aligned_cols=278 Identities=17% Similarity=0.158 Sum_probs=182.7
Q ss_pred ccchhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCcccccccccc
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVGI 476 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i 476 (731)
..+|. + ..+|++|+|++|.++.+ |..++++++|++|++++|.....+ |..|.++++|++|++++|......|..+
T Consensus 23 ~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 23 HQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp SSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred ccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 34555 2 37899999999999977 678999999999999997655455 4568999999999999995444457789
Q ss_pred CCCCCCCccCceEeCCCCCcCCCccccccc--ccCCCCCCcccccCCCCCCChhhhhhc-cccccccCCceEEEEecCCC
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLES--LKNLEHLQVCGIRRLGDVSDVGEAKRL-ELDKKKYLSYLRLEFDKKKE 553 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~i~~l~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~ 553 (731)
+.+++|++|++..+... +..+.. +..+++|+.|.+++..- ....+. .+.++++|+.|++++|....
T Consensus 100 ~~l~~L~~L~L~~n~l~-------~~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLD-------GAVLSGNFFKPLTSLEMLVLRDNNI----KKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCTTCCEEECTTSCCB-------THHHHSSTTTTCTTCCEEECCSSBC----CSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred cCcccCCEEeCCCCCCC-------ccccCcccccCcccCCEEECCCCcc----CccCcccccCCCCcccEEeCCCCcccc
Confidence 99999999988554332 112223 77888999988876322 222222 26788999999999887621
Q ss_pred CcccCCcc-----------------------cHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc-------------
Q 039852 554 GEETRKNE-----------------------DDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK------------- 597 (731)
Q Consensus 554 ~~~~~~~~-----------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~------------- 597 (731)
........ ........+...++|++|++++|.+.+..|.++...
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 10000000 000111123344678899998887654344433211
Q ss_pred ----------------------------c----------c--CCCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 598 ----------------------------L----------R--AAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 598 ----------------------------L----------~--~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
| . ....++.+++|++|+|++|. ++.++...+ ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l 322 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF-----WGL 322 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-----TTC
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh-----cCc
Confidence 0 0 01125667777777777654 444443322 456
Q ss_pred cccceeeccccccccccccccccccccccccCcccceeeecccccCcCC-CCCCCCCCCccEEEEccCc
Q 039852 638 PKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL-PDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l-p~~~~~l~~L~~L~l~~c~ 705 (731)
++|+.|+++++ .+..++.. .+..+++|++|++++|. +..+ |..+..+++|++|++++|.
T Consensus 323 ~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 323 THLLKLNLSQN-FLGSIDSR-------MFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCCEEECCSS-CCCEECGG-------GGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCC-ccCCcChh-------HhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc
Confidence 78888888776 44444322 23378999999999974 5554 7778889999999999875
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=181.88 Aligned_cols=266 Identities=15% Similarity=0.176 Sum_probs=182.4
Q ss_pred CccchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccc
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~ 475 (731)
+..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|. +..+ |..+.++++|++|++++| .+..+|..
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCC-cCCcCCHh
Confidence 345666554 489999999999998876 78999999999999964 5555 456899999999999998 66777776
Q ss_pred -cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCC
Q 039852 476 -IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEG 554 (731)
Q Consensus 476 -i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 554 (731)
++.+++|+.|++..+.... ......+.++++|+.|.+++...+ .......+.++++|+.|++++|..
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~------l~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~l~~L~~L~l~~n~l--- 186 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKT------LGETSLFSHLTKLQILRVGNMDTF---TKIQRKDFAGLTFLEELEIDASDL--- 186 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSS------SCSSCSCTTCTTCCEEEEEESSSC---CEECTTTTTTCCEEEEEEEEETTC---
T ss_pred HhCCCccCCEEECCCCCCcc------cCchhhhccCCCCcEEECCCCccc---cccCHHHccCCCCCCEEECCCCCc---
Confidence 7889999988875443321 111134677888888888764222 222334567788999999998876
Q ss_pred cccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccc
Q 039852 555 EETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEII 634 (731)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 634 (731)
....+..+..+++|++|++++|.... +|..+. +.+++|++|+++++. ++.++...+.. .
T Consensus 187 --------~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~---------~~~~~L~~L~L~~n~-l~~~~~~~l~~--~ 245 (353)
T 2z80_A 187 --------QSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFV---------DVTSSVECLELRDTD-LDTFHFSELST--G 245 (353)
T ss_dssp --------CEECTTTTTTCSEEEEEEEECSCSTT-HHHHHH---------HHTTTEEEEEEESCB-CTTCCCC-------
T ss_pred --------CccCHHHHhccccCCeecCCCCcccc-chhhhh---------hhcccccEEECCCCc-ccccccccccc--c
Confidence 11234567778899999999988765 665432 337889999998865 43333221111 1
Q ss_pred ccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCC-CCCCCccEEEEccCc
Q 039852 635 IAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYI-HQTTTLKELRILMCG 705 (731)
Q Consensus 635 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~-~~l~~L~~L~l~~c~ 705 (731)
...+.++.+.++++ .+..-... .-+..+..+++|++|++++| +++.+|..+ ..+++|++|+++++|
T Consensus 246 ~~~~~l~~l~L~~~-~l~~~~l~---~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 246 ETNSLIKKFTFRNV-KITDESLF---QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -CCCCCCEEEEESC-BCCHHHHH---HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccchhhccccccc-cccCcchh---hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 23456666666655 22211000 00112337899999999996 788999775 789999999999876
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.8e-18 Score=192.75 Aligned_cols=231 Identities=13% Similarity=0.098 Sum_probs=144.3
Q ss_pred cchhhhhccccccEEeecCCcccccccc-ccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccc-ccc
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSET-LCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMV-VGI 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p-~~i 476 (731)
..|..|+.+.+|++|+|++|.+..+|.. ++++++|++|+|++| .+..+|.. ++++++|++|++++|. +..+| ..+
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 167 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF 167 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh
Confidence 3445888999999999999998877654 688999999999985 57778776 4889999999999884 44444 458
Q ss_pred CCCCCCCccCceEeCCCCCcCCCccccccccc----------------CCCCCCcccccCCCCC----------------
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLESLK----------------NLEHLQVCGIRRLGDV---------------- 524 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~----------------~L~~L~~L~i~~l~~~---------------- 524 (731)
+.+++|+.|++..+.... ..+..++ ...+|+.|.+++..-.
T Consensus 168 ~~l~~L~~L~L~~N~l~~-------~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTH-------VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp TTCTTCCEEECTTSCCSB-------CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred hcCCcCcEEECcCCCCCC-------cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 888888888775443321 1111111 1122222222221000
Q ss_pred -CChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCC
Q 039852 525 -SDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAAS 603 (731)
Q Consensus 525 -~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~ 603 (731)
+.... ...+..+++|+.|+|++|.. ....+..+..+++|+.|+|++|.+.+ +|. .
T Consensus 241 ~n~l~~--~~~l~~l~~L~~L~Ls~N~l-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~----------~ 296 (597)
T 3oja_B 241 HNNLTD--TAWLLNYPGLVEVDLSYNEL-----------EKIMYHPFVKMQRLERLYISNNRLVA-LNL----------Y 296 (597)
T ss_dssp SSCCCC--CGGGGGCTTCSEEECCSSCC-----------CEEESGGGTTCSSCCEEECTTSCCCE-EEC----------S
T ss_pred CCCCCC--ChhhccCCCCCEEECCCCcc-----------CCCCHHHhcCccCCCEEECCCCCCCC-CCc----------c
Confidence 00000 01233444455555544443 11122334444555555555555444 332 2
Q ss_pred CCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccc
Q 039852 604 FGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCP 681 (731)
Q Consensus 604 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~ 681 (731)
++.+|+|++|+|++|. +..+|..+ ..+++|+.|+++++ .+..++. ..+++|++|++++|+
T Consensus 297 ~~~l~~L~~L~Ls~N~-l~~i~~~~------~~l~~L~~L~L~~N-~l~~~~~----------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNH-LLHVERNQ------PQFDRLENLYLDHN-SIVTLKL----------STHHTLKNLTLSHND 356 (597)
T ss_dssp SSCCTTCCEEECCSSC-CCCCGGGH------HHHTTCSEEECCSS-CCCCCCC----------CTTCCCSEEECCSSC
T ss_pred cccCCCCcEEECCCCC-CCccCccc------ccCCCCCEEECCCC-CCCCcCh----------hhcCCCCEEEeeCCC
Confidence 4568999999999875 66676654 47899999999998 4555542 278999999999976
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1e-17 Score=174.79 Aligned_cols=252 Identities=15% Similarity=0.198 Sum_probs=171.7
Q ss_pred cchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccccC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
.+|..+. .+|++|+|++|.++.+|. .++++++|++|++++|. +..+ |..+..+++|++|++++| .+..+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~ 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc
Confidence 4554443 578889999998888876 68889999999998855 5444 778888999999999888 5677777665
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCccc
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 557 (731)
++|+.|.+..+... ......+.++++|+.|.+++.... ........+..+++|+.|+++.|...
T Consensus 121 --~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l~~L~~L~l~~n~l~----- 184 (330)
T 1xku_A 121 --KTLQELRVHENEIT-------KVRKSVFNGLNQMIVVELGTNPLK--SSGIENGAFQGMKKLSYIRIADTNIT----- 184 (330)
T ss_dssp --TTCCEEECCSSCCC-------BBCHHHHTTCTTCCEEECCSSCCC--GGGBCTTGGGGCTTCCEEECCSSCCC-----
T ss_pred --ccccEEECCCCccc-------ccCHhHhcCCccccEEECCCCcCC--ccCcChhhccCCCCcCEEECCCCccc-----
Confidence 67777776544322 222334677788888877753221 01123345677888899988887661
Q ss_pred CCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 558 RKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
.++..+ +++|++|++++|...+..|. .++.+++|++|+|+++. ++.++...+ ..+
T Consensus 185 -------~l~~~~--~~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l 239 (330)
T 1xku_A 185 -------TIPQGL--PPSLTELHLDGNKITKVDAA----------SLKGLNNLAKLGLSFNS-ISAVDNGSL-----ANT 239 (330)
T ss_dssp -------SCCSSC--CTTCSEEECTTSCCCEECTG----------GGTTCTTCCEEECCSSC-CCEECTTTG-----GGS
T ss_pred -------cCCccc--cccCCEEECCCCcCCccCHH----------HhcCCCCCCEEECCCCc-CceeChhhc-----cCC
Confidence 111222 26888999988887662233 35668889999998865 555554332 467
Q ss_pred cccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCC-CC------CCCCccEEEEccCch
Q 039852 638 PKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDY-IH------QTTTLKELRILMCGL 706 (731)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~-~~------~l~~L~~L~l~~c~~ 706 (731)
++|+.|+++++ .+..++.... .+++|++|++++| .++.+|.. +. ..++|+.|+++++|.
T Consensus 240 ~~L~~L~L~~N-~l~~lp~~l~--------~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPGGLA--------DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTCCEEECCSS-CCSSCCTTTT--------TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCEEECCCC-cCccCChhhc--------cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 88999999887 5665554332 7889999999885 57777632 21 246788889988874
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=4.5e-18 Score=177.60 Aligned_cols=243 Identities=14% Similarity=0.142 Sum_probs=112.2
Q ss_pred ccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccccCCCCCCCccC
Q 039852 409 VHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLG 486 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 486 (731)
.+|++|+|++|.+..+| ..+.++.+|++|++++|. +..+ |..+.++++|++|++++| .+..+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence 45666666666665553 346666666666666643 3333 455666666666666665 4445555544 4555555
Q ss_pred ceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHH
Q 039852 487 EFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLL 566 (731)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 566 (731)
+..+... ......+.++++|+.|.+.+..-. . .......+..+ +|+.|++++|.... +
T Consensus 130 l~~n~i~-------~~~~~~~~~l~~L~~L~l~~n~l~-~-~~~~~~~~~~l-~L~~L~l~~n~l~~------------l 187 (332)
T 2ft3_A 130 IHDNRIR-------KVPKGVFSGLRNMNCIEMGGNPLE-N-SGFEPGAFDGL-KLNYLRISEAKLTG------------I 187 (332)
T ss_dssp CCSSCCC-------CCCSGGGSSCSSCCEEECCSCCCB-G-GGSCTTSSCSC-CCSCCBCCSSBCSS------------C
T ss_pred CCCCccC-------ccCHhHhCCCccCCEEECCCCccc-c-CCCCcccccCC-ccCEEECcCCCCCc------------c
Confidence 4333221 111122445555555555442110 0 01112223333 55566665554410 1
Q ss_pred hhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecc
Q 039852 567 LEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIE 646 (731)
Q Consensus 567 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~ 646 (731)
+..+ +++|++|++++|.... ++. ..++.+++|++|+|+++. ++.++...+ ..+++|+.|+++
T Consensus 188 ~~~~--~~~L~~L~l~~n~i~~-~~~---------~~l~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l~~L~~L~L~ 249 (332)
T 2ft3_A 188 PKDL--PETLNELHLDHNKIQA-IEL---------EDLLRYSKLYRLGLGHNQ-IRMIENGSL-----SFLPTLRELHLD 249 (332)
T ss_dssp CSSS--CSSCSCCBCCSSCCCC-CCT---------TSSTTCTTCSCCBCCSSC-CCCCCTTGG-----GGCTTCCEEECC
T ss_pred Cccc--cCCCCEEECCCCcCCc-cCH---------HHhcCCCCCCEEECCCCc-CCcCChhHh-----hCCCCCCEEECC
Confidence 1111 1455566665555544 221 124445555555555532 333333221 344555555555
Q ss_pred ccccccccccccccccccccccCcccceeeecccccCcCCCCC-CCC------CCCccEEEEccCc
Q 039852 647 DLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDY-IHQ------TTTLKELRILMCG 705 (731)
Q Consensus 647 ~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~-~~~------l~~L~~L~l~~c~ 705 (731)
++ .+..++.... .+++|++|++++| .++.+|.. +.. .++|+.|+++++|
T Consensus 250 ~N-~l~~lp~~l~--------~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 250 NN-KLSRVPAGLP--------DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SS-CCCBCCTTGG--------GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CC-cCeecChhhh--------cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 54 3444333221 4555555555553 34444321 111 2445555555555
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1e-17 Score=183.46 Aligned_cols=245 Identities=18% Similarity=0.234 Sum_probs=139.2
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
++++.+|++|++++|.+..+|. ++++++|++|++++| .+..+|. +.++++|++|++++| .+..+| .++.+++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccE
Confidence 5556666666666666555554 556666666666653 3444443 556666666666655 334443 2555556665
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|.+.. .. ..+..+.++++|+.|++++..- ... ..+..+++|+.|++++|.....
T Consensus 161 L~l~~-~~---------~~~~~~~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~---------- 214 (466)
T 1o6v_A 161 LSFGN-QV---------TDLKPLANLTTLERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISDI---------- 214 (466)
T ss_dssp EEEEE-SC---------CCCGGGTTCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCC----------
T ss_pred eecCC-cc---------cCchhhccCCCCCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCccccc----------
Confidence 55431 11 1123356666677766665321 111 1356677777777777655110
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccchhhc------------ccCCCCCCCCCCcceeeeccccCceEeCccccccc
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK------------LRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVE 632 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~------------L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 632 (731)
..+..+++|++|++++|.... +|.. ..+ +..+++++.+++|++|++++|. +..++.
T Consensus 215 ---~~~~~l~~L~~L~l~~n~l~~-~~~l-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~------ 282 (466)
T 1o6v_A 215 ---TPLGILTNLDELSLNGNQLKD-IGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISP------ 282 (466)
T ss_dssp ---GGGGGCTTCCEEECCSSCCCC-CGGG-GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGG------
T ss_pred ---ccccccCCCCEEECCCCCccc-chhh-hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCcccc------
Confidence 013345677777777776655 4421 111 1223335556666666666643 333332
Q ss_pred ccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 633 IIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 633 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
...+++|+.|+++++ .+..++. +..+++|++|++++| .+..++. +..+++|++|++++|+
T Consensus 283 -~~~l~~L~~L~L~~n-~l~~~~~---------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 283 -LAGLTALTNLELNEN-QLEDISP---------ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp -GTTCTTCSEEECCSS-CCSCCGG---------GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSC
T ss_pred -ccCCCccCeEEcCCC-cccCchh---------hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCc
Confidence 135677777777766 3444332 237889999999887 5666654 6778999999999885
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=194.34 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=71.6
Q ss_pred chhhhhccccccEEeecCCc-cccc-cccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc--c
Q 039852 401 IPRNIEKLVHLRYLNLSGQD-IVQL-SETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG--I 476 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~--i 476 (731)
.|..|.++.+|++|+|++|. +..+ |..+++|++|++|+|++|......|..|+++++|++|++++|.....+|.. +
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 35667777777777777774 4455 566777777777777775433344666777777777777777333334544 6
Q ss_pred CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccC
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRR 520 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 520 (731)
+++++|+.|++..+.... ......+.++++|+.|++++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~------~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRS------LYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp SSCSSCCEEEEESCCCCC------CCCCGGGGTCSSCCEEEEES
T ss_pred cccCCCCEEECCCCcccc------cccchhHhhCCCCCEEECCC
Confidence 777777777765544332 11123466677777776665
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=5.4e-18 Score=190.14 Aligned_cols=88 Identities=24% Similarity=0.237 Sum_probs=56.1
Q ss_pred hhhhhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCcccc--ccccccC
Q 039852 402 PRNIEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLR--YMVVGIG 477 (731)
Q Consensus 402 p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~~p~~i~ 477 (731)
|..|+++++|++|+|++|.+..+| ..++++++|++|++++|. +..+|.. ++++++|++|++++| .+. .+|..++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 120 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFP 120 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC-cccccchhhhhh
Confidence 456667777777777777766554 456777777777777743 4444443 677777777777776 333 2345566
Q ss_pred CCCCCCccCceEeC
Q 039852 478 RLTGLRTLGEFHVS 491 (731)
Q Consensus 478 ~L~~L~~L~~~~~~ 491 (731)
++++|+.|++..+.
T Consensus 121 ~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 121 NLTNLQTLRIGNVE 134 (549)
T ss_dssp TCTTCCEEEEEESS
T ss_pred ccCCccEEECCCCc
Confidence 67777777665544
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.4e-17 Score=182.44 Aligned_cols=255 Identities=15% Similarity=0.194 Sum_probs=137.3
Q ss_pred ccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
..++. ++++++|++|+|++|.+..+|. +.++++|++|++++| .+..+|. +..+++|++|+++++ +..++. +++
T Consensus 103 ~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~ 175 (466)
T 1o6v_A 103 ADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LAN 175 (466)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTT
T ss_pred ccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCCc--ccCchh-hcc
Confidence 34454 9999999999999999999986 999999999999995 4666663 677777777777532 223322 566
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhh-----------------hhhccccccccC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGE-----------------AKRLELDKKKYL 541 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~-----------------~~~~~l~~~~~L 541 (731)
+++|+.|++..+... .+..+..+++|+.|.+.+..-. .... .....+..+++|
T Consensus 176 l~~L~~L~l~~n~l~---------~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L 245 (466)
T 1o6v_A 176 LTTLERLDISSNKVS---------DISVLAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTNL 245 (466)
T ss_dssp CTTCCEEECCSSCCC---------CCGGGGGCTTCSEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred CCCCCEEECcCCcCC---------CChhhccCCCCCEEEecCCccc-ccccccccCCCCEEECCCCCcccchhhhcCCCC
Confidence 666666655433322 1233445555555555442111 0000 000123344455
Q ss_pred CceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc------------ccCCCCCCCCCC
Q 039852 542 SYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK------------LRAAASFGKMPS 609 (731)
Q Consensus 542 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~------------L~~l~~l~~l~~ 609 (731)
+.|++++|.... ...+..+++|++|++++|...+ +|. +..+ +..+++++.+++
T Consensus 246 ~~L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 310 (466)
T 1o6v_A 246 TDLDLANNQISN-------------LAPLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPISNLKN 310 (466)
T ss_dssp SEEECCSSCCCC-------------CGGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred CEEECCCCcccc-------------chhhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchhhcCCCC
Confidence 555555443310 0113445566666666665554 333 1110 022222344444
Q ss_pred cceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCC
Q 039852 610 LEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDY 689 (731)
Q Consensus 610 L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~ 689 (731)
|++|+|++|. +..++. ...+++|+.|+++++ .+..++ .+..+++|++|++++|+ +..++.
T Consensus 311 L~~L~L~~n~-l~~~~~-------~~~l~~L~~L~l~~n-~l~~~~---------~l~~l~~L~~L~l~~n~-l~~~~~- 370 (466)
T 1o6v_A 311 LTYLTLYFNN-ISDISP-------VSSLTKLQRLFFYNN-KVSDVS---------SLANLTNINWLSAGHNQ-ISDLTP- 370 (466)
T ss_dssp CSEEECCSSC-CSCCGG-------GGGCTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEECCSSC-CCBCGG-
T ss_pred CCEEECcCCc-CCCchh-------hccCccCCEeECCCC-ccCCch---------hhccCCCCCEEeCCCCc-cCccch-
Confidence 4444444432 222211 124455555555554 233321 13367777777777764 444443
Q ss_pred CCCCCCccEEEEccCc
Q 039852 690 IHQTTTLKELRILMCG 705 (731)
Q Consensus 690 ~~~l~~L~~L~l~~c~ 705 (731)
+..+++|+.|++++|+
T Consensus 371 ~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 371 LANLTRITQLGLNDQA 386 (466)
T ss_dssp GTTCTTCCEEECCCEE
T ss_pred hhcCCCCCEEeccCCc
Confidence 6677778888877776
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=9.6e-18 Score=188.37 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=86.3
Q ss_pred cccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccc---hhhc--c----------cC
Q 039852 536 DKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSL---LVQK--L----------RA 600 (731)
Q Consensus 536 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~---~~~~--L----------~~ 600 (731)
..+++|+.|+++.|.. ....+..+..+++|++|++++|.+.+ +|.. +..+ | ..
T Consensus 350 ~~l~~L~~L~l~~n~l-----------~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVF-----------TDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCC-----------CTTTTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCCceEEECCCCcc-----------ccchhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCC
Confidence 4667888888887766 12234556677788888888877665 4421 1110 0 01
Q ss_pred -CC--CCCCCCCcceeeeccccCceEeCcccccccccccC-cccceeeccccccccccccccccccccccccCcccceee
Q 039852 601 -AA--SFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF-PKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFE 676 (731)
Q Consensus 601 -l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~ 676 (731)
+| .+..+++|++|++++|.-...++ ..+ ++|+.|+++++ .++.++.... .+++|++|+
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~l~~~L~~L~L~~N-~l~~ip~~~~--------~l~~L~~L~ 479 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVF---------RCLPPKVKVLDLHNN-RIMSIPKDVT--------HLQALQELN 479 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGG---------SSCCTTCSEEECCSS-CCCCCCTTTT--------SSCCCSEEE
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchh---------hhhcCcCCEEECCCC-cCcccChhhc--------CCCCCCEEE
Confidence 11 13445555555555543111110 123 57777777776 5665554433 789999999
Q ss_pred ecccccCcCCCCC-CCCCCCccEEEEccCc
Q 039852 677 IKWCPKLKALPDY-IHQTTTLKELRILMCG 705 (731)
Q Consensus 677 i~~c~~L~~lp~~-~~~l~~L~~L~l~~c~ 705 (731)
+++| +++.+|.. +..+++|+.|+++++|
T Consensus 480 L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 480 VASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 9985 68889977 7889999999999876
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=186.53 Aligned_cols=87 Identities=28% Similarity=0.226 Sum_probs=66.1
Q ss_pred chhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCcccccc--ccccC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYM--VVGIG 477 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~--p~~i~ 477 (731)
.|..|+++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|.. .+++|++|++++| .+..+ |..++
T Consensus 68 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~ 143 (562)
T 3a79_B 68 RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFG 143 (562)
T ss_dssp CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGG
T ss_pred ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCC-CccccCchHhhc
Confidence 346788888888888888888876 566888888888888884 47778876 7888888888888 44444 46788
Q ss_pred CCCCCCccCceEeC
Q 039852 478 RLTGLRTLGEFHVS 491 (731)
Q Consensus 478 ~L~~L~~L~~~~~~ 491 (731)
++++|+.|++..+.
T Consensus 144 ~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 144 NLTKLTFLGLSAAK 157 (562)
T ss_dssp GCTTCCEEEEECSB
T ss_pred ccCcccEEecCCCc
Confidence 88888888776543
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=1.6e-17 Score=180.58 Aligned_cols=251 Identities=17% Similarity=0.120 Sum_probs=127.5
Q ss_pred hhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLR 483 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 483 (731)
.++.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|++++| .+..+| ++.+++|+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLT 130 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCC
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCC
Confidence 4666666666666666666664 6666666666666633 54454 666666666666666 444443 55666666
Q ss_pred ccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccH
Q 039852 484 TLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDD 563 (731)
Q Consensus 484 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 563 (731)
.|++..+.... + .+..+++|+.|.+.+...+... .+..+++|+.|++++|....
T Consensus 131 ~L~l~~N~l~~---------l-~l~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~---------- 184 (457)
T 3bz5_A 131 YLNCARNTLTE---------I-DVSHNTQLTELDCHLNKKITKL------DVTPQTQLTTLDCSFNKITE---------- 184 (457)
T ss_dssp EEECTTSCCSC---------C-CCTTCTTCCEEECTTCSCCCCC------CCTTCTTCCEEECCSSCCCC----------
T ss_pred EEECCCCccce---------e-ccccCCcCCEEECCCCCccccc------ccccCCcCCEEECCCCccce----------
Confidence 66553332221 1 2444555555555443222111 23444555555555554310
Q ss_pred HHHhhcCCCCCCCceEEEeeecCCCCCccchh-hc---------ccCCCCCCCCCCcceeeeccccCceEeCcccccccc
Q 039852 564 QLLLEALRPPLDLKKLEIRYYRGNTVFRSLLV-QK---------LRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEI 633 (731)
Q Consensus 564 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~-~~---------L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 633 (731)
++ +..+++|+.|++++|.+.+ ++-.-. .+ +..+| ++.+++|++|+++++. ++.++.
T Consensus 185 ---l~-l~~l~~L~~L~l~~N~l~~-~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~-l~~~~~------- 250 (457)
T 3bz5_A 185 ---LD-VSQNKLLNRLNCDTNNITK-LDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP-LTELDV------- 250 (457)
T ss_dssp ---CC-CTTCTTCCEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSCCCC-------
T ss_pred ---ec-cccCCCCCEEECcCCcCCe-eccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc-CCCcCH-------
Confidence 00 2333444444444444333 210000 00 02233 5667788888887754 444432
Q ss_pred cccCcccceeeccccccccccccccccc-cccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCchh
Q 039852 634 IIAFPKLKSLLIEDLLELEEWDYGITRT-GNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCGLL 707 (731)
Q Consensus 634 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L 707 (731)
..|++|+.|.+++. +++.+....... .....+.+++|+.|++++|+.++.+|.. .++|+.|++++|+.|
T Consensus 251 -~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 251 -STLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ---AAGITELDLSQNPKL 320 (457)
T ss_dssp -TTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCCCTTCTTC
T ss_pred -HHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccC---CCcceEechhhcccC
Confidence 34566655555443 344433332211 0112337899999999999888877742 334444445555444
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.5e-17 Score=170.67 Aligned_cols=244 Identities=18% Similarity=0.154 Sum_probs=183.3
Q ss_pred ccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccccc-ccccCCCCCCCc
Q 039852 407 KLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYM-VVGIGRLTGLRT 484 (731)
Q Consensus 407 ~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~ 484 (731)
...+|++++++++.++.+|..+. .+|++|++++| .+..+|. .+.++++|++|++++| .+..+ |..++.+++|+.
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLER 104 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCE
T ss_pred CcCCCeEEEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCE
Confidence 45589999999999999998775 68999999995 5766765 6999999999999999 45555 778999999999
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+.... ....+ .++|+.|.+++.. ........+.++++|+.|+++.|.... ..
T Consensus 105 L~Ls~n~l~~--------l~~~~--~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~ 161 (330)
T 1xku_A 105 LYLSKNQLKE--------LPEKM--PKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKS---------SG 161 (330)
T ss_dssp EECCSSCCSB--------CCSSC--CTTCCEEECCSSC----CCBBCHHHHTTCTTCCEEECCSSCCCG---------GG
T ss_pred EECCCCcCCc--------cChhh--cccccEEECCCCc----ccccCHhHhcCCccccEEECCCCcCCc---------cC
Confidence 9885543321 11112 1577777777632 223334456788999999999887610 11
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceee
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLL 644 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~ 644 (731)
.....+..+++|++|++++|.... +|.. ..++|++|+++++. ++.++...+ ..+++|+.|+
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~------------~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~ 222 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQG------------LPPSLTELHLDGNK-ITKVDAASL-----KGLNNLAKLG 222 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSS------------CCTTCSEEECTTSC-CCEECTGGG-----TTCTTCCEEE
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcc------------ccccCCEEECCCCc-CCccCHHHh-----cCCCCCCEEE
Confidence 223455667899999999999877 7652 13899999999865 666654433 5789999999
Q ss_pred ccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 645 IEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 645 l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
++++ .+..++... +..+++|++|++++| .+..+|..+..+++|++|++++|+
T Consensus 223 Ls~n-~l~~~~~~~-------~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 223 LSFN-SISAVDNGS-------LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CCSS-CCCEECTTT-------GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCC-cCceeChhh-------ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 9987 455544322 337899999999997 788999989999999999999986
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=2.2e-17 Score=172.29 Aligned_cols=241 Identities=15% Similarity=0.136 Sum_probs=179.8
Q ss_pred ccccEEeecCCccccccccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCcccccc-ccccCCCCCCCccC
Q 039852 409 VHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYM-VVGIGRLTGLRTLG 486 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~ 486 (731)
.+|++++++++.++.+|..+. .+|++|++++|. +..+ |..+.++++|++|++++| .+..+ |..++.+++|+.|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEE
Confidence 589999999999999998875 689999999955 6666 457999999999999999 45554 77799999999998
Q ss_pred ceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHH
Q 039852 487 EFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLL 566 (731)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 566 (731)
+..+.... ....+. ++|+.|.+++.. ........+.++++|+.|++++|.... ....
T Consensus 109 L~~n~l~~--------l~~~~~--~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~ 165 (332)
T 2ft3_A 109 ISKNHLVE--------IPPNLP--SSLVELRIHDNR----IRKVPKGVFSGLRNMNCIEMGGNPLEN---------SGFE 165 (332)
T ss_dssp CCSSCCCS--------CCSSCC--TTCCEEECCSSC----CCCCCSGGGSSCSSCCEEECCSCCCBG---------GGSC
T ss_pred CCCCcCCc--------cCcccc--ccCCEEECCCCc----cCccCHhHhCCCccCCEEECCCCcccc---------CCCC
Confidence 86543321 111222 578888877632 222333347788999999999887610 1122
Q ss_pred hhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecc
Q 039852 567 LEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIE 646 (731)
Q Consensus 567 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~ 646 (731)
...+..+ +|++|++++|.+.. +|.. ..++|++|+++++. ++.++...+ ..+++|+.|+++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~------------~~~~L~~L~l~~n~-i~~~~~~~l-----~~l~~L~~L~L~ 225 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKD------------LPETLNELHLDHNK-IQAIELEDL-----LRYSKLYRLGLG 225 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSS------------SCSSCSCCBCCSSC-CCCCCTTSS-----TTCTTCSCCBCC
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcc------------ccCCCCEEECCCCc-CCccCHHHh-----cCCCCCCEEECC
Confidence 3445555 89999999999887 7752 13799999999864 555554332 578999999999
Q ss_pred ccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 647 DLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 647 ~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
++ .+..++... +..+++|++|++++| .+..+|..+..+++|++|++++++
T Consensus 226 ~N-~l~~~~~~~-------~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 226 HN-QIRMIENGS-------LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SS-CCCCCCTTG-------GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CC-cCCcCChhH-------hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 87 455544322 337999999999996 788999989999999999999986
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=2.6e-17 Score=186.86 Aligned_cols=253 Identities=16% Similarity=0.203 Sum_probs=161.0
Q ss_pred cccEEeecCCcccccccc-ccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCce
Q 039852 410 HLRYLNLSGQDIVQLSET-LCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEF 488 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 488 (731)
.|++|++++|.+..+|.. ++++++|++|++++| .+..+|..+..+++|++|++++|......|..++.+++|+.|.+.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 799999999999988765 899999999999995 588999999999999999999994333346678999999999886
Q ss_pred EeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhh--hccccccccCCceEEEEecCCCCcccCCcccHHHH
Q 039852 489 HVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAK--RLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLL 566 (731)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~--~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 566 (731)
.+.... ......+..+++|+.|++++..- .... ...+..+++|+.|++++|.. ....
T Consensus 334 ~n~~~~------~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~~~l~~L~~L~l~~n~l-----------~~~~ 392 (606)
T 3t6q_A 334 GNTKRL------ELGTGCLENLENLRELDLSHDDI----ETSDCCNLQLRNLSHLQSLNLSYNEP-----------LSLK 392 (606)
T ss_dssp SCSSCC------BCCSSTTTTCTTCCEEECCSSCC----CEEEESTTTTTTCTTCCEEECCSCSC-----------EEEC
T ss_pred CCCccc------ccchhhhhccCcCCEEECCCCcc----ccccCcchhcccCCCCCEEECCCCcC-----------CcCC
Confidence 554331 11223477888899988876322 2222 34578899999999998875 1223
Q ss_pred hhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecc
Q 039852 567 LEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIE 646 (731)
Q Consensus 567 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~ 646 (731)
+..+..+++|++|++++|...+..|.. .++.+++|++|++++|. +...+...+ ..+++|++|+++
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~L~ 457 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQS---------PFQNLHLLKVLNLSHSL-LDISSEQLF-----DGLPALQHLNLQ 457 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCC---------TTTTCTTCCEEECTTCC-CBTTCTTTT-----TTCTTCCEEECT
T ss_pred HHHhcCCccCCeEECCCCcCCCcccch---------hhhCcccCCEEECCCCc-cCCcCHHHH-----hCCCCCCEEECC
Confidence 456777899999999999876522321 24455666666665543 222222211 345556666655
Q ss_pred ccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccC
Q 039852 647 DLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMC 704 (731)
Q Consensus 647 ~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c 704 (731)
++. +....... ...+..+++|++|++++|.--...|..+..+++|++|++++|
T Consensus 458 ~n~-l~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 458 GNH-FPKGNIQK----TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TCB-CGGGEECS----SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCC-CCcccccc----chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 552 22110000 001224555555555554222222344445555555555554
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=182.37 Aligned_cols=92 Identities=23% Similarity=0.151 Sum_probs=76.4
Q ss_pred CccchhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCcccc-ccccc
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLR-YMVVG 475 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~ 475 (731)
....|..|.++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|.. .+++|++|++++|.... .+|..
T Consensus 34 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~ 110 (520)
T 2z7x_B 34 SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFNAFDALPICKE 110 (520)
T ss_dssp CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEeccCCccccccchhh
Confidence 334457899999999999999999977 678999999999999994 57788887 89999999999994333 36788
Q ss_pred cCCCCCCCccCceEeCC
Q 039852 476 IGRLTGLRTLGEFHVSG 492 (731)
Q Consensus 476 i~~L~~L~~L~~~~~~~ 492 (731)
++.+++|+.|++..+..
T Consensus 111 ~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp GGGCTTCCEEEEEESSC
T ss_pred hccCCcceEEEecCccc
Confidence 99999999998876543
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=1.5e-17 Score=186.44 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=83.3
Q ss_pred ccccCCceEEEEecCCCCcccCCcccHHHH---hhcCCCCCCCceEEEeeecCCCCCcc---chhhc------------c
Q 039852 537 KKKYLSYLRLEFDKKKEGEETRKNEDDQLL---LEALRPPLDLKKLEIRYYRGNTVFRS---LLVQK------------L 598 (731)
Q Consensus 537 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~lp~---~~~~~------------L 598 (731)
.+++|+.|+++.|.. .... ...+..+++|++|++++|.+.. +|. .+..+ +
T Consensus 332 ~l~~L~~L~Ls~N~l-----------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 332 HLKSLEFLDLSENLM-----------VEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp HCTTCCEEECCSSCC-----------CHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred cCccccEEEccCCcc-----------ccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCC
Confidence 467788888877765 1111 2224455666666666665544 331 11111 1
Q ss_pred cCCC-CCCCCCCcceeeeccccCceEeCcccccc------------cccccCcccceeeccccccccccccccccccccc
Q 039852 599 RAAA-SFGKMPSLEKLHIWGMKRVKKVGDEFLGV------------EIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTV 665 (731)
Q Consensus 599 ~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~------------~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 665 (731)
..+| .++.+++|++|++++|. ++.++...... +....+++|++|+++++ +++.++..
T Consensus 400 ~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~-------- 469 (549)
T 2z81_A 400 HPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA-------- 469 (549)
T ss_dssp CCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG--------
T ss_pred ccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc--------
Confidence 2222 24556667777776654 43333221000 00124667777777776 45555431
Q ss_pred cccCcccceeeecccccCcCCCC-CCCCCCCccEEEEccCc
Q 039852 666 IDIMPRLSSFEIKWCPKLKALPD-YIHQTTTLKELRILMCG 705 (731)
Q Consensus 666 ~~~~p~L~~L~i~~c~~L~~lp~-~~~~l~~L~~L~l~~c~ 705 (731)
..+++|++|++++| .++.+|. .+..+++|+.|++++||
T Consensus 470 -~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 470 -SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp -GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred -ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 16889999999986 6666654 47889999999998876
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=9.8e-18 Score=190.40 Aligned_cols=255 Identities=14% Similarity=0.132 Sum_probs=138.3
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
+..+.+|++|+++++.+..+| .+..+.+|+.|++++|. +..+| .+ .+++|++|++++|.....+ .++.+++|+.
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~-l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 354 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQ-LKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSY 354 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCC-CSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCE
T ss_pred cccCCCCCEEEecCccchhhh-hccccccCCEEEccccc-Ccccc-cC-CCCccceeeccCCcCccch--hhccCCCCCE
Confidence 556666666666666666665 55566666666666644 35555 33 5555666655555322222 3344455555
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCC-------------------CChhhhhh-ccccccccCCce
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDV-------------------SDVGEAKR-LELDKKKYLSYL 544 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~-------------------~~~~~~~~-~~l~~~~~L~~L 544 (731)
|++..+.... .......+..+++|+.|.+++..-. +....... ..+..+++|+.|
T Consensus 355 L~ls~n~l~~-----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 355 LDLSRNALSF-----SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp EECCSSCEEE-----EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred EECcCCccCC-----CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 4443221110 0001223334444444444431100 01111111 223344455555
Q ss_pred EEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCC-CccchhhcccCCCCCCCCCCcceeeeccccCceE
Q 039852 545 RLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTV-FRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKK 623 (731)
Q Consensus 545 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~ 623 (731)
++++|.. ....+..+..+++|++|++++|...+. +| ..++.+++|++|+|++|. ++.
T Consensus 430 ~l~~n~l-----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~l~~L~~L~Ls~n~-l~~ 487 (606)
T 3vq2_A 430 DISYTNT-----------KIDFDGIFLGLTSLNTLKMAGNSFKDNTLS----------NVFANTTNLTFLDLSKCQ-LEQ 487 (606)
T ss_dssp ECTTSCC-----------EECCTTTTTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTTSC-CCE
T ss_pred ECcCCCC-----------CccchhhhcCCCCCCEEECCCCcCCCcchH----------HhhccCCCCCEEECCCCc-CCc
Confidence 5544433 011122334445555555555544321 12 246778999999999875 555
Q ss_pred eCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCC-CccEEEEc
Q 039852 624 VGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTT-TLKELRIL 702 (731)
Q Consensus 624 i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~-~L~~L~l~ 702 (731)
++...+ ..+++|++|+++++ .+..+... .+..+++|++|++++| +++.+|..+..++ +|++|+++
T Consensus 488 ~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 488 ISWGVF-----DTLHRLQLLNMSHN-NLLFLDSS-------HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp ECTTTT-----TTCTTCCEEECCSS-CCSCEEGG-------GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECC
T ss_pred cChhhh-----cccccCCEEECCCC-cCCCcCHH-------HccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEcc
Confidence 554432 46789999999988 45444222 1337899999999997 5889998888887 69999999
Q ss_pred cCch
Q 039852 703 MCGL 706 (731)
Q Consensus 703 ~c~~ 706 (731)
++|-
T Consensus 554 ~N~~ 557 (606)
T 3vq2_A 554 NNSV 557 (606)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 8763
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2.7e-17 Score=169.59 Aligned_cols=234 Identities=13% Similarity=0.083 Sum_probs=144.6
Q ss_pred ccchhhhhccccccEEeecCCcccccccc-ccCCCceeEEeccCCcCcccC---cccccCCCCcceeeccCCcccccccc
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSET-LCELYILEKLDISYCMDLEEL---PEGIKKLINMRHLLNDGTDTLRYMVV 474 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~c~~l~~l---p~~i~~L~~L~~L~l~~~~~~~~~p~ 474 (731)
..+|..+. .+|++|+|++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++| .+..+|.
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChh
Confidence 34554432 5778888888888877765 5778888888888743 4433 556667788888888877 5566776
Q ss_pred ccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCC
Q 039852 475 GIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEG 554 (731)
Q Consensus 475 ~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 554 (731)
.+..+++|+.|++..+.... ..... .+..+++|+.|++++|..
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~------~~~~~----------------------------~~~~l~~L~~L~l~~n~l--- 138 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQ------MSEFS----------------------------VFLSLRNLIYLDISHTHT--- 138 (306)
T ss_dssp EEETCTTCCEEECTTSEEES------STTTT----------------------------TTTTCTTCCEEECTTSCC---
T ss_pred hcCCCCCCCEEECCCCcccc------cccch----------------------------hhhhccCCCEEECCCCcC---
Confidence 67777777776553221110 00001 233445556666655543
Q ss_pred cccCCcccHHHHhhcCCCCCCCceEEEeeecCCC-CCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccc
Q 039852 555 EETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNT-VFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEI 633 (731)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 633 (731)
.......+..+++|++|++++|...+ .+|. .++.+++|++|++++|. ++.++...+
T Consensus 139 --------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~~l~~L~~L~Ls~n~-l~~~~~~~~---- 195 (306)
T 2z66_A 139 --------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----------IFTELRNLTFLDLSQCQ-LEQLSPTAF---- 195 (306)
T ss_dssp --------EECSTTTTTTCTTCCEEECTTCEEGGGEECS----------CCTTCTTCCEEECTTSC-CCEECTTTT----
T ss_pred --------CccchhhcccCcCCCEEECCCCccccccchh----------HHhhCcCCCEEECCCCC-cCCcCHHHh----
Confidence 01122334556777777777766543 1232 35667888888888754 555544332
Q ss_pred cccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCC-CccEEEEccCc
Q 039852 634 IIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTT-TLKELRILMCG 705 (731)
Q Consensus 634 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~-~L~~L~l~~c~ 705 (731)
..+++|+.|+++++ .+..++... +..+++|++|++++|.-....|..+..++ +|++|++++++
T Consensus 196 -~~l~~L~~L~L~~N-~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 -NSLSSLQVLNMSHN-NFFSLDTFP-------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -TTCTTCCEEECTTS-CCSBCCSGG-------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -cCCCCCCEEECCCC-ccCccChhh-------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 45778888888876 344443322 22688899999988755455566677764 89999998866
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.5e-16 Score=173.43 Aligned_cols=231 Identities=20% Similarity=0.227 Sum_probs=144.1
Q ss_pred ccchhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccc-
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVG- 475 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~- 475 (731)
..+|..+. .+|++|+|++|.+..+ |..+.++.+|++|+|++|. +..+ |..|.++++|++|++++| .+..+|.+
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 142 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGA 142 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTT
T ss_pred CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC-cCCccChhh
Confidence 34555443 5777888888877766 4567777888888887754 4444 355777788888888777 45555554
Q ss_pred cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCc
Q 039852 476 IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGE 555 (731)
Q Consensus 476 i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 555 (731)
+..+++|+.|++..+... ......+.++++|+.|+++.+....
T Consensus 143 ~~~l~~L~~L~L~~N~l~-----------------------------------~~~~~~~~~l~~L~~L~l~~~~~l~-- 185 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIE-----------------------------------SIPSYAFNRVPSLMRLDLGELKKLE-- 185 (452)
T ss_dssp SSSCTTCCEEECCSCCCC-----------------------------------EECTTTTTTCTTCCEEECCCCTTCC--
T ss_pred hcccCCCCEEECCCCCcc-----------------------------------eeCHhHHhcCCcccEEeCCCCCCcc--
Confidence 566666666655332211 1111123344555555555432200
Q ss_pred ccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccc
Q 039852 556 ETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIII 635 (731)
Q Consensus 556 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 635 (731)
......+..+++|++|++++|.+.. +| .+..+++|++|+|+++. ++.++...+ .
T Consensus 186 --------~i~~~~~~~l~~L~~L~L~~n~l~~-~~-----------~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----~ 239 (452)
T 3zyi_A 186 --------YISEGAFEGLFNLKYLNLGMCNIKD-MP-----------NLTPLVGLEELEMSGNH-FPEIRPGSF-----H 239 (452)
T ss_dssp --------EECTTTTTTCTTCCEEECTTSCCSS-CC-----------CCTTCTTCCEEECTTSC-CSEECGGGG-----T
T ss_pred --------ccChhhccCCCCCCEEECCCCcccc-cc-----------cccccccccEEECcCCc-CcccCcccc-----c
Confidence 0011234566788888888877655 43 35678888888888755 555544432 4
Q ss_pred cCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCC-CCCCCCCccEEEEccCc
Q 039852 636 AFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD-YIHQTTTLKELRILMCG 705 (731)
Q Consensus 636 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~~~l~~L~~L~l~~c~ 705 (731)
.+++|+.|+++++ .+..+.... +..+++|++|++++| +++.+|. .+..+++|+.|+++++|
T Consensus 240 ~l~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNS-QVSLIERNA-------FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCC-cCceECHHH-------hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 6788888888877 444443322 237888888988886 6777764 35678888899988866
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=2.9e-17 Score=189.17 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccc-cccccccccCcccceeeecccc
Q 039852 603 SFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGIT-RTGNTVIDIMPRLSSFEIKWCP 681 (731)
Q Consensus 603 ~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~~~p~L~~L~i~~c~ 681 (731)
.++.+++|++|+++++. +..++...+ ..+++|+.|+++++..-..++.... ......+..+++|++|++++|.
T Consensus 267 ~~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNN-IQHLFSHSL-----HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp TTTTCTTCCEEECCSCC-BSEECTTTT-----TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred cccCcccccEeeCCCCc-cCccChhhh-----cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 36778888888888765 444433322 4677788887775421111110000 0001123367788888887764
Q ss_pred cCcCC-CCCCCCCCCccEEEEccCc
Q 039852 682 KLKAL-PDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 682 ~L~~l-p~~~~~l~~L~~L~l~~c~ 705 (731)
+..+ |..+..+++|++|++++|.
T Consensus 341 -l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 341 -IPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp -BCCCCTTTTTTCTTCCEEECTTCB
T ss_pred -cCCCChhHhccccCCcEEECCCCc
Confidence 4444 4456677778888877764
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=175.10 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=65.1
Q ss_pred ccchhhhhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCc-ccccCCCCcceeeccCCccccccccc-
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELP-EGIKKLINMRHLLNDGTDTLRYMVVG- 475 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~- 475 (731)
..+|..+. .++++|+|++|.+..++ ..+.++.+|++|+|++|. +..++ ..|.++++|++|++++| .+..+|.+
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhH
Confidence 45665554 57888999988888775 568888899999998854 55554 56888888999999888 56666654
Q ss_pred cCCCCCCCccCceEe
Q 039852 476 IGRLTGLRTLGEFHV 490 (731)
Q Consensus 476 i~~L~~L~~L~~~~~ 490 (731)
+..+++|+.|++..+
T Consensus 132 ~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN 146 (440)
T ss_dssp SCSCSSCCEEECCSC
T ss_pred hhccccCceeeCCCC
Confidence 777777777766443
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=5.7e-17 Score=176.78 Aligned_cols=211 Identities=17% Similarity=0.149 Sum_probs=139.7
Q ss_pred CccchhhhhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCcccccccc-
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVV- 474 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~- 474 (731)
....|..|.++.+|++|+|++|.+..++ ..+.++.+|++|+|++| .+..+|.. +..+++|++|++++| .+..+|.
T Consensus 88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 165 (452)
T 3zyi_A 88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSY 165 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTT
T ss_pred ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCC-CcceeCHh
Confidence 3344778999999999999999999876 67999999999999995 57777765 888999999999999 5666666
Q ss_pred ccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCC
Q 039852 475 GIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEG 554 (731)
Q Consensus 475 ~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 554 (731)
.+.++++|+.|++..+.... ......+..+++|+.|++++..- ... ..+..+++|+.|+|++|..
T Consensus 166 ~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L~L~~n~l-~~~-----~~~~~l~~L~~L~Ls~N~l--- 230 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKLE------YISEGAFEGLFNLKYLNLGMCNI-KDM-----PNLTPLVGLEELEMSGNHF--- 230 (452)
T ss_dssp TTTTCTTCCEEECCCCTTCC------EECTTTTTTCTTCCEEECTTSCC-SSC-----CCCTTCTTCCEEECTTSCC---
T ss_pred HHhcCCcccEEeCCCCCCcc------ccChhhccCCCCCCEEECCCCcc-ccc-----ccccccccccEEECcCCcC---
Confidence 47888888888775433222 11223455666777766665221 111 1355666777777776655
Q ss_pred cccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccc
Q 039852 555 EETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEII 634 (731)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 634 (731)
....+..+..+++|++|++++|.+.. ++. ..++.+++|++|+|+++ .++.++...+
T Consensus 231 --------~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~----- 286 (452)
T 3zyi_A 231 --------PEIRPGSFHGLSSLKKLWVMNSQVSL-IER---------NAFDGLASLVELNLAHN-NLSSLPHDLF----- 286 (452)
T ss_dssp --------SEECGGGGTTCTTCCEEECTTSCCCE-ECT---------TTTTTCTTCCEEECCSS-CCSCCCTTSS-----
T ss_pred --------cccCcccccCccCCCEEEeCCCcCce-ECH---------HHhcCCCCCCEEECCCC-cCCccChHHh-----
Confidence 11123345556677777777766654 211 13455677777777765 3555554432
Q ss_pred ccCcccceeeccccc
Q 039852 635 IAFPKLKSLLIEDLL 649 (731)
Q Consensus 635 ~~f~~L~~L~l~~~~ 649 (731)
..+++|+.|++++++
T Consensus 287 ~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 287 TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEccCCC
Confidence 345667777776653
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-16 Score=172.19 Aligned_cols=250 Identities=16% Similarity=0.146 Sum_probs=151.5
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
++.+++|++|+|++|.++.+| ++++++|++|++++| .+..+| ++.+++|++|++++| .+..+| ++.+++|+.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~ 152 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTE 152 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCE
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCE
Confidence 778888888888888888775 788888888888884 466665 778888888888887 455553 667777777
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+.... .+ .+..+++|+.|++++..- . .. .+..+++|+.|++++|....
T Consensus 153 L~l~~n~~~~--------~~-~~~~l~~L~~L~ls~n~l-~---~l---~l~~l~~L~~L~l~~N~l~~----------- 205 (457)
T 3bz5_A 153 LDCHLNKKIT--------KL-DVTPQTQLTTLDCSFNKI-T---EL---DVSQNKLLNRLNCDTNNITK----------- 205 (457)
T ss_dssp EECTTCSCCC--------CC-CCTTCTTCCEEECCSSCC-C---CC---CCTTCTTCCEEECCSSCCSC-----------
T ss_pred EECCCCCccc--------cc-ccccCCcCCEEECCCCcc-c---ee---ccccCCCCCEEECcCCcCCe-----------
Confidence 7664432211 11 345555666666554211 1 10 14445555555555554410
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccchhhcc----------cCCCCCCCCCC----------cceeeeccccCceEe
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKL----------RAAASFGKMPS----------LEKLHIWGMKRVKKV 624 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L----------~~l~~l~~l~~----------L~~L~L~~~~~l~~i 624 (731)
. .+..+++|++|++++|.+.+ +|-+-...| ..++ ++.+++ |+.|++++|..++.+
T Consensus 206 --~-~l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 206 --L-DLNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp --C-CCTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred --e-ccccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 0 13334445555555444444 441100000 1111 234444 455556655544444
Q ss_pred CcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccC
Q 039852 625 GDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMC 704 (731)
Q Consensus 625 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c 704 (731)
+. ..+++|+.|++++|..++.++..........+..+|+|++|++++| +++.+| +..+++|+.|+++++
T Consensus 281 ~~--------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 281 QA--------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp EC--------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred cc--------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 32 4679999999999988877775433222233557789999999885 677775 778999999999875
Q ss_pred c
Q 039852 705 G 705 (731)
Q Consensus 705 ~ 705 (731)
.
T Consensus 350 ~ 350 (457)
T 3bz5_A 350 H 350 (457)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2.3e-17 Score=170.11 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=73.5
Q ss_pred Cccchhh-hhccccccEEeecCCccccc---cccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccc
Q 039852 398 TPKIPRN-IEKLVHLRYLNLSGQDIVQL---SETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMV 473 (731)
Q Consensus 398 ~~~lp~~-i~~L~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p 473 (731)
+..+|.. |.++++|++|+|++|.+..+ |..+..+.+|++|++++| .+..+|..+..+++|++|++++| .+..++
T Consensus 40 l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~ 117 (306)
T 2z66_A 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMS 117 (306)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESST
T ss_pred cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCC-cccccc
Confidence 3456654 78999999999999998865 677888999999999994 57789999999999999999998 566665
Q ss_pred c--ccCCCCCCCccCce
Q 039852 474 V--GIGRLTGLRTLGEF 488 (731)
Q Consensus 474 ~--~i~~L~~L~~L~~~ 488 (731)
. .+..+++|+.|++.
T Consensus 118 ~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 118 EFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp TTTTTTTCTTCCEEECT
T ss_pred cchhhhhccCCCEEECC
Confidence 4 57778888877663
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=9.6e-17 Score=188.74 Aligned_cols=274 Identities=15% Similarity=0.103 Sum_probs=175.0
Q ss_pred ccchhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCcccccccccc
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVGI 476 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i 476 (731)
..+|. -..+|++|+|++|.++.+ |..+.+|.+|++|++++|.....+ |..|.+|++|++|++++|......|..+
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 45665 457999999999999976 678999999999999998777777 6779999999999999995444457789
Q ss_pred CCCCCCCccCceEeCCCCCcCCCccccccc--ccCCCCCCcccccCCCCCCChhhh-hhccccccccCCceEEEEecCCC
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLES--LKNLEHLQVCGIRRLGDVSDVGEA-KRLELDKKKYLSYLRLEFDKKKE 553 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~i~~l~~~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~ 553 (731)
+++++|+.|++..+... ...+.. +.++++|+.|++++..- ... ....+.++++|+.|++++|....
T Consensus 94 ~~l~~L~~L~Ls~n~l~-------~~~~~~~~~~~L~~L~~L~Ls~N~l----~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLS-------DAVLKDGYFRNLKALTRLDLSKNQI----RSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CSCSSCCCEECTTCCCS-------SCCSTTCCCSSCSSCCEEEEESCCC----CCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCCcccCEeeCcCCCCC-------cccccCccccccCCCCEEECCCCcc----cccccchhHhhCCCCCEEECCCCcCCe
Confidence 99999999988655433 112233 78889999999887322 111 22357889999999999887621
Q ss_pred CcccCCcccHHHH-------------------hhcCCCCC------CCceEEEeeecCCCCCccchhhcc----------
Q 039852 554 GEETRKNEDDQLL-------------------LEALRPPL------DLKKLEIRYYRGNTVFRSLLVQKL---------- 598 (731)
Q Consensus 554 ~~~~~~~~~~~~~-------------------~~~l~~~~------~L~~L~l~~~~~~~~lp~~~~~~L---------- 598 (731)
.. ....... +..+..++ +|+.|++++|......|.++...+
T Consensus 163 ~~----~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 163 VC----EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CC----SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred eC----HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 10 0000000 01111112 388888888865544444433210
Q ss_pred ----------------------------------------cC--CCCCCCCCCcceeeeccccCceEeCccccccccccc
Q 039852 599 ----------------------------------------RA--AASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIA 636 (731)
Q Consensus 599 ----------------------------------------~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 636 (731)
.. ...++.+++|+.|+|+++. ++.++...+ ..
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-----~~ 312 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAF-----YG 312 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTT-----TT
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHh-----cC
Confidence 00 0113444555555555433 333332221 34
Q ss_pred CcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCC-CCCCCCCccEEEEccCc
Q 039852 637 FPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD-YIHQTTTLKELRILMCG 705 (731)
Q Consensus 637 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~~~l~~L~~L~l~~c~ 705 (731)
+++|+.|+++++ .+..+.. ..+..+++|++|++++| .+..++. .+..+++|++|++++|.
T Consensus 313 l~~L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 313 LDNLQVLNLSYN-LLGELYS-------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSSCCEEEEESC-CCSCCCS-------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCEEECCCC-CCCccCH-------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 556666666655 2332221 12347888888888886 5666653 46778899999998875
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=172.34 Aligned_cols=244 Identities=13% Similarity=0.146 Sum_probs=184.4
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccCc-ccccCCCCcceeeccCCccccccc-cccCCCCCCCccCc
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELP-EGIKKLINMRHLLNDGTDTLRYMV-VGIGRLTGLRTLGE 487 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~ 487 (731)
..+.++.++..++.+|..+. .+++.|+|++|. +..++ ..|.++++|++|++++| .+..++ ..+..+++|+.|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEEC
Confidence 35678889999999998876 689999999955 65554 67999999999999999 555555 45889999999988
Q ss_pred eEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHh
Q 039852 488 FHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLL 567 (731)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 567 (731)
..+... ......+..+++|+.|.+++. .+.......+.++++|+.|+++.+.... ....
T Consensus 120 ~~n~l~-------~~~~~~~~~l~~L~~L~L~~N----~i~~~~~~~~~~l~~L~~L~l~~~~~l~----------~i~~ 178 (440)
T 3zyj_A 120 FDNRLT-------TIPNGAFVYLSKLKELWLRNN----PIESIPSYAFNRIPSLRRLDLGELKRLS----------YISE 178 (440)
T ss_dssp CSSCCS-------SCCTTTSCSCSSCCEEECCSC----CCCEECTTTTTTCTTCCEEECCCCTTCC----------EECT
T ss_pred CCCcCC-------eeCHhHhhccccCceeeCCCC----cccccCHHHhhhCcccCEeCCCCCCCcc----------eeCc
Confidence 665433 112235778888999888762 2333344467789999999998864411 1112
Q ss_pred hcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccc
Q 039852 568 EALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIED 647 (731)
Q Consensus 568 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~ 647 (731)
..+..+++|++|++++|.+.. +| .+..+++|++|+|++|. ++.++...+ ..+++|+.|++++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~-~~-----------~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLRE-IP-----------NLTPLIKLDELDLSGNH-LSAIRPGSF-----QGLMHLQKLWMIQ 240 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSS-CC-----------CCTTCSSCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECTT
T ss_pred chhhcccccCeecCCCCcCcc-cc-----------ccCCCcccCEEECCCCc-cCccChhhh-----ccCccCCEEECCC
Confidence 346678999999999998765 54 46789999999999874 666655443 5789999999998
Q ss_pred cccccccccccccccccccccCcccceeeecccccCcCCCC-CCCCCCCccEEEEccCc
Q 039852 648 LLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD-YIHQTTTLKELRILMCG 705 (731)
Q Consensus 648 ~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~~~l~~L~~L~l~~c~ 705 (731)
+ .+..++... +..+++|++|++++| +++.+|. .+..+++|+.|+++++|
T Consensus 241 n-~l~~~~~~~-------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 S-QIQVIERNA-------FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-CCCEECTTS-------STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C-ceeEEChhh-------hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 7 565554432 337899999999996 7888874 45789999999999877
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=183.95 Aligned_cols=87 Identities=24% Similarity=0.208 Sum_probs=58.1
Q ss_pred hhhhhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccc-ccccccCC
Q 039852 402 PRNIEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLR-YMVVGIGR 478 (731)
Q Consensus 402 p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~ 478 (731)
|..|+++++|++|+|++|.+..+| ..++++.+|++|++++| .+..+|. .++++++|++|++++|.... .+|..+++
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 147 (570)
T 2z63_A 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (570)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred cccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcc
Confidence 455777777777777777777665 45777777777777774 4555554 47777777777777773222 25667777
Q ss_pred CCCCCccCceE
Q 039852 479 LTGLRTLGEFH 489 (731)
Q Consensus 479 L~~L~~L~~~~ 489 (731)
+++|+.|++..
T Consensus 148 l~~L~~L~l~~ 158 (570)
T 2z63_A 148 LTNLEHLDLSS 158 (570)
T ss_dssp CTTCCEEECTT
T ss_pred cCCCCEEeCcC
Confidence 77777776543
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=3.5e-18 Score=177.01 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=130.4
Q ss_pred hccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 406 EKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 406 ~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
..+++|++|+|++|.++.++ ..+.++++|++|++++|. +..++. +..+++|++|++++| .+..+| .+++|+.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-cccccc----CCCCcCE
Confidence 34567888888888887665 467888888888888844 544443 778888888888887 444444 2356666
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+.... .. ...+++|+.|.+++. .........+..+++|+.|++++|... .
T Consensus 104 L~l~~n~l~~-------~~---~~~~~~L~~L~l~~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~ 158 (317)
T 3o53_A 104 LHAANNNISR-------VS---CSRGQGKKNIYLANN----KITMLRDLDEGCRSRVQYLDLKLNEID-----------T 158 (317)
T ss_dssp EECCSSCCSE-------EE---ECCCSSCEEEECCSS----CCCSGGGBCTGGGSSEEEEECTTSCCC-----------E
T ss_pred EECCCCccCC-------cC---ccccCCCCEEECCCC----CCCCccchhhhccCCCCEEECCCCCCC-----------c
Confidence 6554332221 01 122344555555542 122222334455566666666665441 0
Q ss_pred HHhhcC-CCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccccee
Q 039852 565 LLLEAL-RPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSL 643 (731)
Q Consensus 565 ~~~~~l-~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L 643 (731)
..+..+ ..+++|++|++++|.+.. +|. ...+++|++|+|++|. ++.++..+ ..+++|+.|
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-----------~~~l~~L~~L~Ls~N~-l~~l~~~~------~~l~~L~~L 219 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYD-VKG-----------QVVFAKLKTLDLSSNK-LAFMGPEF------QSAAGVTWI 219 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCE-EEC-----------CCCCTTCCEEECCSSC-CCEECGGG------GGGTTCSEE
T ss_pred ccHHHHhhccCcCCEEECCCCcCcc-ccc-----------ccccccCCEEECCCCc-CCcchhhh------cccCcccEE
Confidence 011111 134566666666665544 322 2235666666666543 44554442 245666666
Q ss_pred eccccccccccccccccccccccccCcccceeeecccccC-cCCCCCCCCCCCccEEEEccCchhH
Q 039852 644 LIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKL-KALPDYIHQTTTLKELRILMCGLLK 708 (731)
Q Consensus 644 ~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L-~~lp~~~~~l~~L~~L~l~~c~~L~ 708 (731)
+++++ .+..++.... .+++|+.|++++|+-. ..+|..+..+++|+.+++++|+.++
T Consensus 220 ~L~~N-~l~~l~~~~~--------~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 220 SLRNN-KLVLIEKALR--------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp ECTTS-CCCEECTTCC--------CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ECcCC-cccchhhHhh--------cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 66665 3444433221 5566666666665433 2344444455555555555555444
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=7.6e-18 Score=184.80 Aligned_cols=241 Identities=16% Similarity=0.211 Sum_probs=136.8
Q ss_pred chhhhhcc----ccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc
Q 039852 401 IPRNIEKL----VHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 401 lp~~i~~L----~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 475 (731)
+|..+..+ ++|++|+|++|.+..+| ..++++++|++|+|++|. +...++ +..+++|++|++++| .+..+|.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE-
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC-
Confidence 44444444 48999999999999775 579999999999999955 554444 889999999999998 5665553
Q ss_pred cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCc
Q 039852 476 IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGE 555 (731)
Q Consensus 476 i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 555 (731)
.++|+.|++..+.... .. ...+++|+.|.+++. .+....+..+.++++|+.|+|++|...
T Consensus 98 ---~~~L~~L~L~~N~l~~-------~~---~~~l~~L~~L~L~~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 157 (487)
T 3oja_A 98 ---GPSIETLHAANNNISR-------VS---CSRGQGKKNIYLANN----KITMLRDLDEGCRSRVQYLDLKLNEID--- 157 (487)
T ss_dssp ---CTTCCEEECCSSCCCC-------EE---ECCCSSCEEEECCSS----CCCSGGGBCGGGGSSEEEEECTTSCCC---
T ss_pred ---CCCcCEEECcCCcCCC-------CC---ccccCCCCEEECCCC----CCCCCCchhhcCCCCCCEEECCCCCCC---
Confidence 3677777664443321 01 122445555555542 222233334555666666666666541
Q ss_pred ccCCcccHHHHhhcCC-CCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccc
Q 039852 556 ETRKNEDDQLLLEALR-PPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEII 634 (731)
Q Consensus 556 ~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 634 (731)
...+..+. .+++|++|++++|.+.+ +|. ...+++|++|+|++|. ++.++..+
T Consensus 158 --------~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~-----------~~~l~~L~~L~Ls~N~-l~~~~~~~------ 210 (487)
T 3oja_A 158 --------TVNFAELAASSDTLEHLNLQYNFIYD-VKG-----------QVVFAKLKTLDLSSNK-LAFMGPEF------ 210 (487)
T ss_dssp --------EEEGGGGGGGTTTCCEEECTTSCCCE-EEC-----------CCCCTTCCEEECCSSC-CCEECGGG------
T ss_pred --------CcChHHHhhhCCcccEEecCCCcccc-ccc-----------cccCCCCCEEECCCCC-CCCCCHhH------
Confidence 11122222 34566666666666544 322 2345666666666543 44554442
Q ss_pred ccCcccceeeccccccccccccccccccccccccCcccceeeecccccC-cCCCCCCCCCCCccEEEE
Q 039852 635 IAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKL-KALPDYIHQTTTLKELRI 701 (731)
Q Consensus 635 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L-~~lp~~~~~l~~L~~L~l 701 (731)
..+++|+.|+++++ .+..++.... .+++|+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 211 ~~l~~L~~L~Ls~N-~l~~lp~~l~--------~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 QSAAGVTWISLRNN-KLVLIEKALR--------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGTTCSEEECTTS-CCCEECTTCC--------CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCccEEEecCC-cCcccchhhc--------cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 24566666666655 3444333221 4566666666665433 233433344444444443
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=179.07 Aligned_cols=257 Identities=17% Similarity=0.171 Sum_probs=188.4
Q ss_pred CccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
....|..+..+.+|++|++++|.+..+|..+..+ +|++|++++|. +..+|. ..+++|++|++++|......+. .
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~ 344 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNKGGNAFSE--V 344 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCB--CBCSSCCEEEEESCBSCCBCCC--C
T ss_pred hhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCc--ccccccCEEeCcCCcccccccc--c
Confidence 3456778899999999999999999999999999 99999999965 668886 5789999999999854333333 6
Q ss_pred CCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCccc
Q 039852 478 RLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 478 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 557 (731)
.+++|+.|++..+.... .......+..+++|+.|.+++.. ..... ..+..+++|+.|++++|....
T Consensus 345 ~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~~~L~~L~l~~n~----l~~~~-~~~~~l~~L~~L~l~~n~l~~---- 410 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSF-----KGCCSQSDFGTTSLKYLDLSFNG----VITMS-SNFLGLEQLEHLDFQHSNLKQ---- 410 (570)
T ss_dssp BCTTCCEEECCSSCCBE-----EEEEEHHHHTCSCCCEEECCSCS----EEEEE-EEEETCTTCCEEECTTSEEES----
T ss_pred cCCCCCEEeCcCCccCc-----cccccccccccCccCEEECCCCc----ccccc-ccccccCCCCEEEccCCcccc----
Confidence 78888888775443221 01113456778889998887632 22222 237788999999999876510
Q ss_pred CCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCc-eEeCccccccccccc
Q 039852 558 RKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRV-KKVGDEFLGVEIIIA 636 (731)
Q Consensus 558 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l-~~i~~~~~~~~~~~~ 636 (731)
......+..+++|++|++++|...+..|. .++.+++|++|+|++|... ..+|..+ ..
T Consensus 411 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~p~~~------~~ 468 (570)
T 2z63_A 411 ------MSEFSVFLSLRNLIYLDISHTHTRVAFNG----------IFNGLSSLEVLKMAGNSFQENFLPDIF------TE 468 (570)
T ss_dssp ------CTTSCTTTTCTTCCEEECTTSCCEECCTT----------TTTTCTTCCEEECTTCEEGGGEECSCC------TT
T ss_pred ------ccchhhhhcCCCCCEEeCcCCcccccchh----------hhhcCCcCcEEECcCCcCccccchhhh------hc
Confidence 01123466789999999999987663333 4677999999999997633 2455433 57
Q ss_pred CcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCC-CCCCCCCCccEEEEccCc
Q 039852 637 FPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP-DYIHQTTTLKELRILMCG 705 (731)
Q Consensus 637 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~l~~c~ 705 (731)
+++|+.|+++++ .+..+.... +..+++|++|++++| ++..+| ..+..+++|++|+++++|
T Consensus 469 l~~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 469 LRNLTFLDLSQC-QLEQLSPTA-------FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECTTS-CCCEECTTT-------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCC-ccccCChhh-------hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 899999999998 455443222 337899999999997 567765 457889999999999865
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=168.82 Aligned_cols=239 Identities=19% Similarity=0.176 Sum_probs=171.5
Q ss_pred cchh-hhhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCcccccccc--
Q 039852 400 KIPR-NIEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVV-- 474 (731)
Q Consensus 400 ~lp~-~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-- 474 (731)
.+|. .|.++++|++|+|++|.++.++ ..++++.+|++|++++ +.+..+|.. ++++++|++|++++| .+..+|.
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 143 (353)
T 2z80_A 66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETS 143 (353)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSC
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchh
Confidence 3444 7899999999999999999875 5699999999999999 457788877 899999999999999 6777887
Q ss_pred ccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCC
Q 039852 475 GIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEG 554 (731)
Q Consensus 475 ~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 554 (731)
.+..+++|+.|++..+.... ......+..+++|+.|.+++.. ........+..+++|+.|++++|....
T Consensus 144 ~~~~l~~L~~L~l~~n~~~~------~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~l~~l~~L~~L~l~~n~l~~- 212 (353)
T 2z80_A 144 LFSHLTKLQILRVGNMDTFT------KIQRKDFAGLTFLEELEIDASD----LQSYEPKSLKSIQNVSHLILHMKQHIL- 212 (353)
T ss_dssp SCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEEEEEEEETT----CCEECTTTTTTCSEEEEEEEECSCSTT-
T ss_pred hhccCCCCcEEECCCCcccc------ccCHHHccCCCCCCEEECCCCC----cCccCHHHHhccccCCeecCCCCcccc-
Confidence 58899999999887764222 2233567778888888887632 223344567888999999999987610
Q ss_pred cccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccC----ceEeCccccc
Q 039852 555 EETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKR----VKKVGDEFLG 630 (731)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~----l~~i~~~~~~ 630 (731)
..... +..+++|++|++++|...+ ++. ..++.....+.++.++++++.- +..++..+
T Consensus 213 -------~~~~~---~~~~~~L~~L~L~~n~l~~-~~~------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l-- 273 (353)
T 2z80_A 213 -------LLEIF---VDVTSSVECLELRDTDLDT-FHF------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-- 273 (353)
T ss_dssp -------HHHHH---HHHTTTEEEEEEESCBCTT-CCC------C------CCCCCCEEEEESCBCCHHHHHHHHHHH--
T ss_pred -------chhhh---hhhcccccEEECCCCcccc-ccc------cccccccccchhhccccccccccCcchhhhHHHH--
Confidence 01111 2236899999999999877 442 1223344566778888876531 11222222
Q ss_pred ccccccCcccceeeccccccccccccccccccccccccCcccceeeeccccc
Q 039852 631 VEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPK 682 (731)
Q Consensus 631 ~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~ 682 (731)
..+++|+.|+++++ .+..++.... ..+++|++|++++|+-
T Consensus 274 ----~~l~~L~~L~Ls~N-~l~~i~~~~~-------~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 274 ----NQISGLLELEFSRN-QLKSVPDGIF-------DRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ----HTCTTCCEEECCSS-CCCCCCTTTT-------TTCTTCCEEECCSSCB
T ss_pred ----hcccCCCEEECCCC-CCCccCHHHH-------hcCCCCCEEEeeCCCc
Confidence 46889999999998 5776665432 2789999999999864
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=5.2e-16 Score=178.67 Aligned_cols=258 Identities=17% Similarity=0.164 Sum_probs=137.0
Q ss_pred hhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccc-cccCCC
Q 039852 403 RNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMV-VGIGRL 479 (731)
Q Consensus 403 ~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L 479 (731)
..|+++++|++|+|++|.+..+ |..++++++|++|++++| .+..+|. .|+++++|++|++++| .+..+| ..++++
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 120 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQ 120 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTC
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-ccCccChhHcccc
Confidence 3466666666666666666654 445666666666666663 3555555 3666666666666666 334444 346666
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhcc--ccccccCCceEEEEecCCCCccc
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLE--LDKKKYLSYLRLEFDKKKEGEET 557 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~--l~~~~~L~~L~L~~~~~~~~~~~ 557 (731)
++|++|++..+... ......+.++++|+.|.+++..- . ...... ...+++|+.|++++|.....
T Consensus 121 ~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l-~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~--- 186 (680)
T 1ziw_A 121 KNLITLDLSHNGLS-------STKLGTQVQLENLQELLLSNNKI-Q---ALKSEELDIFANSSLKKLELSSNQIKEF--- 186 (680)
T ss_dssp TTCCEEECCSSCCS-------CCCCCSSSCCTTCCEEECCSSCC-C---CBCHHHHGGGTTCEESEEECTTCCCCCB---
T ss_pred CCCCEEECCCCccc-------ccCchhhcccccCCEEEccCCcc-c---ccCHHHhhccccccccEEECCCCccccc---
Confidence 66666665443322 11233445566666666554211 1 111111 12335666666666544110
Q ss_pred CCcccHHHHhhcCC------------------------CCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCC--Ccc
Q 039852 558 RKNEDDQLLLEALR------------------------PPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMP--SLE 611 (731)
Q Consensus 558 ~~~~~~~~~~~~l~------------------------~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~--~L~ 611 (731)
....+..+. ..++|++|++++|...+..|. .++.++ +|+
T Consensus 187 -----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~----------~~~~l~~~~L~ 251 (680)
T 1ziw_A 187 -----SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT----------TFLGLKWTNLT 251 (680)
T ss_dssp -----CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT----------TTGGGGGSCCC
T ss_pred -----ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh----------HhhccCcCCCC
Confidence 000111110 113445555555444432222 233343 488
Q ss_pred eeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCc-----CC
Q 039852 612 KLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLK-----AL 686 (731)
Q Consensus 612 ~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~-----~l 686 (731)
+|+|++|. ++.++...+ ..+++|++|+++++ .+...... .+..+++|++|++++|..-. .+
T Consensus 252 ~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~-------~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 252 MLDLSYNN-LNVVGNDSF-----AWLPQLEYFFLEYN-NIQHLFSH-------SLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp EEECTTSC-CCEECTTTT-----TTCTTCCEEECCSC-CBSEECTT-------TTTTCTTCCEEECTTCBCCC------C
T ss_pred EEECCCCC-cCccCcccc-----cCcccccEeeCCCC-ccCccChh-------hhcCCCCccEEeccchhhhcccccccc
Confidence 88887754 455544332 46788888888876 33333221 13378888888887653221 34
Q ss_pred CC----CCCCCCCccEEEEccCc
Q 039852 687 PD----YIHQTTTLKELRILMCG 705 (731)
Q Consensus 687 p~----~~~~l~~L~~L~l~~c~ 705 (731)
|. .+..+++|++|++++|.
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCC
T ss_pred cccChhhcccCCCCCEEECCCCc
Confidence 42 46678889999998875
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.3e-17 Score=170.40 Aligned_cols=252 Identities=16% Similarity=0.078 Sum_probs=166.3
Q ss_pred hhhccccccEEeecCCccccccccccCCCceeEEeccCCcC-cccCccccc-------CCCCcceeeccCCccccccccc
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMD-LEELPEGIK-------KLINMRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~-l~~lp~~i~-------~L~~L~~L~l~~~~~~~~~p~~ 475 (731)
.++.+.+|++|++++|.+ .+|..+... |+.|++++|.. -..+|..+. ++++|++|++++|.....+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 356677778888888777 777766654 77777777442 134555554 6778888888777433456766
Q ss_pred c--CCCCCCCccCceEeCCCCCcCCCcccccccccCC-----CCCCcccccCCCCCCChhhhhhccccccccCCceEEEE
Q 039852 476 I--GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNL-----EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEF 548 (731)
Q Consensus 476 i--~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L-----~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 548 (731)
+ +.+++|+.|++..+.... ....+..+ ++|+.|.+++.. ........+..+++|+.|++++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~l~~~~~~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWAT--------RDAWLAELQQWLKPGLKVLSIAQAH----SLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSS--------SSSHHHHHHTTCCTTCCEEEEESCS----CCCCCTTTCCCCSSCCEEECCS
T ss_pred HHHhcCCCccEEEccCCCCcc--------hhHHHHHHHHhhcCCCcEEEeeCCC----CccchHHHhccCCCCCEEECCC
Confidence 5 777777777776554432 12333333 677777777622 2233334577888999999988
Q ss_pred ecCCCCcccCCcccHHHHhhcC--CCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeC-
Q 039852 549 DKKKEGEETRKNEDDQLLLEAL--RPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVG- 625 (731)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~- 625 (731)
|... .....+..+ ..+++|++|++++|.+.. +|..... .+..+++|++|+|+++. ++..+
T Consensus 183 N~l~---------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~------~~~~l~~L~~L~Ls~N~-l~~~~~ 245 (312)
T 1wwl_A 183 NPEL---------GERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSA------LAAARVQLQGLDLSHNS-LRDAAG 245 (312)
T ss_dssp CTTC---------HHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHH------HHHTTCCCSEEECTTSC-CCSSCC
T ss_pred CCcC---------cchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHH------HHhcCCCCCEEECCCCc-CCcccc
Confidence 8650 112234444 677899999999998775 4432111 12347899999999865 44433
Q ss_pred cccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 626 DEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 626 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
... ...+++|+.|+++++ .++.++.. .+++|++|++++| +++.+|. +..+++|++|++++++
T Consensus 246 ~~~-----~~~l~~L~~L~Ls~N-~l~~ip~~----------~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 APS-----CDWPSQLNSLNLSFT-GLKQVPKG----------LPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSC-----CCCCTTCCEEECTTS-CCSSCCSS----------CCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhh-----hhhcCCCCEEECCCC-ccChhhhh----------ccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 121 135689999999987 46655432 2379999999985 7888887 8889999999999876
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=4.5e-17 Score=166.00 Aligned_cols=209 Identities=17% Similarity=0.133 Sum_probs=124.8
Q ss_pred cchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCcccccc-cccc
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYM-VVGI 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~-p~~i 476 (731)
.+|..+ ..+|++|+|++|.++.+|. .+.++.+|++|++++|. +..+ |..+..+++|++|++++|..+..+ |..+
T Consensus 25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 455433 4578888888888887764 57888888888888854 5444 667888888888888888535555 4557
Q ss_pred CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcc
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEE 556 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 556 (731)
..+++|+.|++..+... ......+..+++|+.|.+++.. ........+..+++|+.|++++|...
T Consensus 102 ~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQ-------ELGPGLFRGLAALQYLYLQDNA----LQALPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TTCTTCCEEECTTSCCC-------CCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred cCCcCCCEEECCCCcCC-------EECHhHhhCCcCCCEEECCCCc----ccccCHhHhccCCCccEEECCCCccc----
Confidence 77777777766443322 1122345566666666665421 11222233555666777777666541
Q ss_pred cCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccccc
Q 039852 557 TRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIA 636 (731)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 636 (731)
......+..+++|++|++++|.+.+..|. .++.+++|++|+|+++. ++.++...+ ..
T Consensus 167 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~ 223 (285)
T 1ozn_A 167 -------SVPERAFRGLHSLDRLLLHQNRVAHVHPH----------AFRDLGRLMTLYLFANN-LSALPTEAL-----AP 223 (285)
T ss_dssp -------EECTTTTTTCTTCCEEECCSSCCCEECTT----------TTTTCTTCCEEECCSSC-CSCCCHHHH-----TT
T ss_pred -------ccCHHHhcCccccCEEECCCCcccccCHh----------HccCcccccEeeCCCCc-CCcCCHHHc-----cc
Confidence 01112344556677777776665542232 34556677777776643 444444322 35
Q ss_pred Ccccceeeccccc
Q 039852 637 FPKLKSLLIEDLL 649 (731)
Q Consensus 637 f~~L~~L~l~~~~ 649 (731)
+++|+.|++++++
T Consensus 224 l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 224 LRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcccCEEeccCCC
Confidence 5667777666653
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=7.8e-16 Score=172.34 Aligned_cols=235 Identities=17% Similarity=0.146 Sum_probs=155.6
Q ss_pred ccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
..+|..+. ++|++|+|++|.++.+|. .+.+|++|++++| .+..+|. .+++|++|++++| .+..+|. .
T Consensus 53 ~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~ 119 (622)
T 3g06_A 53 TTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA---L 119 (622)
T ss_dssp SCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC---C
T ss_pred CccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC---C
Confidence 35666655 688899998888888887 5688888999884 4777887 6788888888888 5666766 4
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETR 558 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 558 (731)
+++|+.|++..+.... +.. .+++|+.|++++..- .... ....+|+.|+++.|....
T Consensus 120 l~~L~~L~L~~N~l~~---------lp~--~l~~L~~L~Ls~N~l-~~l~-------~~~~~L~~L~L~~N~l~~----- 175 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTS---------LPV--LPPGLQELSVSDNQL-ASLP-------ALPSELCKLWAYNNQLTS----- 175 (622)
T ss_dssp CTTCCEEECCSSCCSC---------CCC--CCTTCCEEECCSSCC-SCCC-------CCCTTCCEEECCSSCCSC-----
T ss_pred CCCcCEEECCCCCCCc---------CCC--CCCCCCEEECcCCcC-CCcC-------CccCCCCEEECCCCCCCC-----
Confidence 5667776654433221 111 135666666665311 1111 123456666666665410
Q ss_pred CcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhc---------ccCCCCCCCCCCcceeeeccccCceEeCcccc
Q 039852 559 KNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQK---------LRAAASFGKMPSLEKLHIWGMKRVKKVGDEFL 629 (731)
Q Consensus 559 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~---------L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~ 629 (731)
++ ..+++|+.|++++|.+.+ +|..+..+ +..+|. .+++|++|+|++|. ++.+|
T Consensus 176 -------l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~-L~~lp---- 237 (622)
T 3g06_A 176 -------LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNR-LTSLP---- 237 (622)
T ss_dssp -------CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSC-CSCCC----
T ss_pred -------Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCC--CCCCCCEEEccCCc-cCcCC----
Confidence 11 234566666666666655 55433222 122222 25789999998863 55555
Q ss_pred cccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCch
Q 039852 630 GVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCGL 706 (731)
Q Consensus 630 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~ 706 (731)
..+++|+.|+++++ ++..++. .+++|++|++++| +++.+|..+..+++|+.|++++|+.
T Consensus 238 -----~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 -----VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -----CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred -----CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 25689999999987 5666554 4689999999997 7889998899999999999999983
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=1.8e-15 Score=172.66 Aligned_cols=85 Identities=24% Similarity=0.274 Sum_probs=45.3
Q ss_pred hhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-cCCC
Q 039852 403 RNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-IGRL 479 (731)
Q Consensus 403 ~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~L 479 (731)
.+|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++| .+..+|.. |.+|++|++|++++| .+..+|.. ++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L 147 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHL 147 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTC
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcC
Confidence 345555566666666655555543 3555556666666553 34445433 455555666665555 34444433 5555
Q ss_pred CCCCccCceE
Q 039852 480 TGLRTLGEFH 489 (731)
Q Consensus 480 ~~L~~L~~~~ 489 (731)
++|+.|++..
T Consensus 148 ~~L~~L~Ls~ 157 (635)
T 4g8a_A 148 KTLKELNVAH 157 (635)
T ss_dssp TTCCEEECCS
T ss_pred cccCeecccc
Confidence 5555555443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=3.9e-17 Score=169.14 Aligned_cols=285 Identities=13% Similarity=0.055 Sum_probs=192.1
Q ss_pred hhhhhccCCcHHHHHHHHHhhccc----CCCcCCccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcC
Q 039852 369 PLRLSYNDLPSRVKRCFSYCAIFV----NRSSLTPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMD 444 (731)
Q Consensus 369 ~L~lsy~~L~~~~k~cf~~~~~f~----~rs~~~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~ 444 (731)
+.+++.+.++......+..+.... ..+.+....|..|+++++|++|+|++|.+..++. +..+++|++|++++| .
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-Y 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-E
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-c
Confidence 344555555555555554332111 1233344456789999999999999999987775 999999999999995 4
Q ss_pred cccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCC
Q 039852 445 LEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDV 524 (731)
Q Consensus 445 l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~ 524 (731)
+..+| .+++|++|++++| .+..++.. .+++|+.|++..+... ......+..+++|+.|++++..
T Consensus 92 l~~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~-- 155 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKIT-------MLRDLDEGCRSRVQYLDLKLNE-- 155 (317)
T ss_dssp EEEEE----ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCC-------SGGGBCTGGGSSEEEEECTTSC--
T ss_pred ccccc----CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCC-------CccchhhhccCCCCEEECCCCC--
Confidence 66655 3489999999999 55665543 3677888877554433 2223356677888888887632
Q ss_pred CChhhhhhccc-cccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCC
Q 039852 525 SDVGEAKRLEL-DKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAAS 603 (731)
Q Consensus 525 ~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~ 603 (731)
........+ ..+++|+.|++++|... .......+++|++|++++|.+.. +|..
T Consensus 156 --l~~~~~~~~~~~l~~L~~L~L~~N~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~-l~~~---------- 209 (317)
T 3o53_A 156 --IDTVNFAELAASSDTLEHLNLQYNFIY-------------DVKGQVVFAKLKTLDLSSNKLAF-MGPE---------- 209 (317)
T ss_dssp --CCEEEGGGGGGGTTTCCEEECTTSCCC-------------EEECCCCCTTCCEEECCSSCCCE-ECGG----------
T ss_pred --CCcccHHHHhhccCcCCEEECCCCcCc-------------ccccccccccCCEEECCCCcCCc-chhh----------
Confidence 222222233 46789999999998761 11334457899999999999877 6653
Q ss_pred CCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccC
Q 039852 604 FGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKL 683 (731)
Q Consensus 604 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L 683 (731)
++.+++|++|+|++|. ++.++..+ ..+++|+.|++++++-...... .++..+++|+.|++.+|+.+
T Consensus 210 ~~~l~~L~~L~L~~N~-l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~-------~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 210 FQSAAGVTWISLRNNK-LVLIEKAL------RFSQNLEHFDLRGNGFHCGTLR-------DFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp GGGGTTCSEEECTTSC-CCEECTTC------CCCTTCCEEECTTCCCBHHHHH-------HHHHTCHHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCCc-ccchhhHh------hcCCCCCEEEccCCCccCcCHH-------HHHhccccceEEECCCchhc
Confidence 4568999999999864 77787654 4679999999999842211111 12337899999999988888
Q ss_pred cCCCCCCCCCCCccEEEEccCchhHHhh
Q 039852 684 KALPDYIHQTTTLKELRILMCGLLKERY 711 (731)
Q Consensus 684 ~~lp~~~~~l~~L~~L~l~~c~~L~~~~ 711 (731)
+..+..-...+.+....-..|..+...+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~cc~~l~~~~ 303 (317)
T 3o53_A 276 TGQNEEECTVPTLGHYGAYCCEDLPAPF 303 (317)
T ss_dssp HSSSSCCCSSTTCEEETTEEEBCCTTTH
T ss_pred cCCchhccCCCceecccceeeccCChhH
Confidence 7765433333444433344566655443
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.2e-15 Score=158.20 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=77.6
Q ss_pred CCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccc
Q 039852 574 LDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEE 653 (731)
Q Consensus 574 ~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 653 (731)
..++.|++++|.+.. +|.. ....++|+.|.+.+++.++.++.+.+ ..+++|+.|+++++ +++.
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~----------~f~~~~L~~l~l~~~n~l~~i~~~~f-----~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNS----------AFNGTQLDELNLSDNNNLEELPNDVF-----HGASGPVILDISRT-RIHS 216 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTT----------SSTTEEEEEEECTTCTTCCCCCTTTT-----TTEECCSEEECTTS-CCCC
T ss_pred hhhhhhccccccccC-CChh----------hccccchhHHhhccCCcccCCCHHHh-----ccCcccchhhcCCC-CcCc
Confidence 457788888887765 5542 23456788888888888888887654 46788999999887 5777
Q ss_pred cccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEcc
Q 039852 654 WDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILM 703 (731)
Q Consensus 654 ~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~ 703 (731)
++.. .|.+|++|.+.+|.+++.+|. +..+++|+.+++.+
T Consensus 217 lp~~----------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 LPSY----------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCSS----------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cChh----------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 6643 577888888888888888886 77788899888865
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=3.7e-15 Score=151.76 Aligned_cols=220 Identities=15% Similarity=0.131 Sum_probs=138.8
Q ss_pred cEEeecCCccccccccccCCCceeEEeccCCcCcccCc-ccccCCCCcceeeccCCcccccc-ccccCCCCCCCccCceE
Q 039852 412 RYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELP-EGIKKLINMRHLLNDGTDTLRYM-VVGIGRLTGLRTLGEFH 489 (731)
Q Consensus 412 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~ 489 (731)
++++.+++.++.+|..+ ..+|++|++++| .+..+| ..+..+++|++|++++| .+..+ |..+..+++|+.|++..
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCC
Confidence 67899999999999765 469999999995 466666 45899999999999998 44554 55677788888777644
Q ss_pred eCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhc
Q 039852 490 VSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEA 569 (731)
Q Consensus 490 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 569 (731)
+.... ......+..+ ++|+.|++++|... ......
T Consensus 90 n~~l~------~~~~~~~~~l----------------------------~~L~~L~l~~n~l~-----------~~~~~~ 124 (285)
T 1ozn_A 90 NAQLR------SVDPATFHGL----------------------------GRLHTLHLDRCGLQ-----------ELGPGL 124 (285)
T ss_dssp CTTCC------CCCTTTTTTC----------------------------TTCCEEECTTSCCC-----------CCCTTT
T ss_pred CCCcc------ccCHHHhcCC----------------------------cCCCEEECCCCcCC-----------EECHhH
Confidence 32111 1112233334 44555555444430 011233
Q ss_pred CCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccc
Q 039852 570 LRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLL 649 (731)
Q Consensus 570 l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~ 649 (731)
+..+++|++|++++|.+.. +|. ..++.+++|++|+++++. ++.++...+ ..+++|+.|+++++
T Consensus 125 ~~~l~~L~~L~l~~n~l~~-~~~---------~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n- 187 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQA-LPD---------DTFRDLGNLTHLFLHGNR-ISSVPERAF-----RGLHSLDRLLLHQN- 187 (285)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCT---------TTTTTCTTCCEEECCSSC-CCEECTTTT-----TTCTTCCEEECCSS-
T ss_pred hhCCcCCCEEECCCCcccc-cCH---------hHhccCCCccEEECCCCc-ccccCHHHh-----cCccccCEEECCCC-
Confidence 4556677777777776655 432 125567777777777653 556655432 35677777777776
Q ss_pred cccccccccccccccccccCcccceeeecccccCcCCCC-CCCCCCCccEEEEccCc
Q 039852 650 ELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD-YIHQTTTLKELRILMCG 705 (731)
Q Consensus 650 ~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~~~l~~L~~L~l~~c~ 705 (731)
.+..+.... +..+++|++|++++| .+..+|. .+..+++|++|+++++|
T Consensus 188 ~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 188 RVAHVHPHA-------FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCCEECTTT-------TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccccCHhH-------ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 344332211 226778888888775 5666653 36677788888887765
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=2.2e-15 Score=163.56 Aligned_cols=171 Identities=19% Similarity=0.140 Sum_probs=85.0
Q ss_pred cEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCceEeC
Q 039852 412 RYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFHVS 491 (731)
Q Consensus 412 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 491 (731)
++|++++|.++.+|.. ..+|++|++++ +.+..+|.. +.+|++|++++| .+..+|.. .++|+.|++..+.
T Consensus 74 ~~L~l~~~~l~~lp~~---~~~L~~L~l~~-n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL---PPHLESLVASC-NSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ 142 (454)
T ss_dssp SEEECTTSCCSCCCSC---CTTCSEEECCS-SCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC
T ss_pred CEEEecCCccccCCCC---cCCCCEEEccC-CcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC
Confidence 5555555555554432 23455555555 234344432 244555555544 23322221 1344444443322
Q ss_pred CCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCC
Q 039852 492 GGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALR 571 (731)
Q Consensus 492 ~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 571 (731)
.. .+.++.++++|+.|++++..- ... +. ...+|+.|++++|... . +..+.
T Consensus 143 l~---------~lp~~~~l~~L~~L~l~~N~l-~~l----p~---~~~~L~~L~L~~n~l~------------~-l~~~~ 192 (454)
T 1jl5_A 143 LE---------KLPELQNSSFLKIIDVDNNSL-KKL----PD---LPPSLEFIAAGNNQLE------------E-LPELQ 192 (454)
T ss_dssp CS---------SCCCCTTCTTCCEEECCSSCC-SCC----CC---CCTTCCEEECCSSCCS------------S-CCCCT
T ss_pred CC---------CCcccCCCCCCCEEECCCCcC-ccc----CC---CcccccEEECcCCcCC------------c-Ccccc
Confidence 11 122456666666666654211 111 01 1136666666666541 1 12456
Q ss_pred CCCCCceEEEeeecCCCCCccchhhc---------ccCCCCCCCCCCcceeeeccccCceEeC
Q 039852 572 PPLDLKKLEIRYYRGNTVFRSLLVQK---------LRAAASFGKMPSLEKLHIWGMKRVKKVG 625 (731)
Q Consensus 572 ~~~~L~~L~l~~~~~~~~lp~~~~~~---------L~~l~~l~~l~~L~~L~L~~~~~l~~i~ 625 (731)
.+++|++|++++|...+ +|.....+ +..+|.++.+++|++|+++++. ++.++
T Consensus 193 ~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~-l~~l~ 253 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLP 253 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCC
T ss_pred CCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCc-CCccc
Confidence 66777777777777766 66544322 2455667778888888888753 44333
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=8.4e-15 Score=144.87 Aligned_cols=199 Identities=18% Similarity=0.168 Sum_probs=121.3
Q ss_pred cccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccccc-cCCCCCCCccC
Q 039852 410 HLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLG 486 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 486 (731)
+|++|+|++|.++.+|. .+.++++|++|++++|..+..+|. .+.++++|++|++++|..+..+|.. +..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~------ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP------ 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC------
Confidence 66777777777766655 466667777777776444555554 4666666777766652234333321 33333
Q ss_pred ceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHH
Q 039852 487 EFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLL 566 (731)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 566 (731)
+|+.|+++.|....
T Consensus 106 -----------------------------------------------------~L~~L~l~~n~l~~------------- 119 (239)
T 2xwt_C 106 -----------------------------------------------------LLKFLGIFNTGLKM------------- 119 (239)
T ss_dssp -----------------------------------------------------TCCEEEEEEECCCS-------------
T ss_pred -----------------------------------------------------CCCEEeCCCCCCcc-------------
Confidence 44444444443300
Q ss_pred hhcCCCCCCCc---eEEEeee-cCCCCCccchhhcccCCCCCCCCCCcc-eeeeccccCceEeCcccccccccccCcccc
Q 039852 567 LEALRPPLDLK---KLEIRYY-RGNTVFRSLLVQKLRAAASFGKMPSLE-KLHIWGMKRVKKVGDEFLGVEIIIAFPKLK 641 (731)
Q Consensus 567 ~~~l~~~~~L~---~L~l~~~-~~~~~lp~~~~~~L~~l~~l~~l~~L~-~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~ 641 (731)
+..+..+++|+ +|++++| .... +|. ..++.+++|+ +|+++++. ++.++...+ .. ++|+
T Consensus 120 lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~---------~~~~~l~~L~~~L~l~~n~-l~~i~~~~~-----~~-~~L~ 182 (239)
T 2xwt_C 120 FPDLTKVYSTDIFFILEITDNPYMTS-IPV---------NAFQGLCNETLTLKLYNNG-FTSVQGYAF-----NG-TKLD 182 (239)
T ss_dssp CCCCTTCCBCCSEEEEEEESCTTCCE-ECT---------TTTTTTBSSEEEEECCSCC-CCEECTTTT-----TT-CEEE
T ss_pred ccccccccccccccEEECCCCcchhh-cCc---------ccccchhcceeEEEcCCCC-CcccCHhhc-----CC-CCCC
Confidence 01123334444 7777777 5444 443 1356788888 88888754 667776543 22 6899
Q ss_pred eeeccccccccccccccccccccccccC-cccceeeecccccCcCCCCCCCCCCCccEEEEccCchh
Q 039852 642 SLLIEDLLELEEWDYGITRTGNTVIDIM-PRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCGLL 707 (731)
Q Consensus 642 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~-p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L 707 (731)
.|+++++..++.++.... ..+ ++|++|++++ +.++.+|.. .+++|+.|+++++..|
T Consensus 183 ~L~L~~n~~l~~i~~~~~-------~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAF-------GGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEECTTCTTCCEECTTTT-------TTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred EEEcCCCCCcccCCHHHh-------hccccCCcEEECCC-CccccCChh--HhccCceeeccCccCC
Confidence 999988865776654432 267 8999999988 477888865 6889999999988754
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=5.7e-16 Score=159.94 Aligned_cols=226 Identities=15% Similarity=0.106 Sum_probs=127.3
Q ss_pred ccEEeecCCccc--ccccccc-------CCCceeEEeccCCcCcccCcccc--cCCCCcceeeccCCccccccccccCCC
Q 039852 411 LRYLNLSGQDIV--QLSETLC-------ELYILEKLDISYCMDLEELPEGI--KKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 411 Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~l~~c~~l~~lp~~i--~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
|++|+|++|.+. .+|..+. ++.+|++|++++|.....+|..+ ..+++|++|++++| .+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 555555555543 2444443 45555555555543333455543 55555555555555 333334444444
Q ss_pred -----CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCC
Q 039852 480 -----TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEG 554 (731)
Q Consensus 480 -----~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 554 (731)
++|+.|++..+... ......+..+++|+.|++++..-...........+..+++|+.|++++|...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-- 214 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSL-------NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-- 214 (312)
T ss_dssp HTTCCTTCCEEEEESCSCC-------CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC--
T ss_pred HHhhcCCCcEEEeeCCCCc-------cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc--
Confidence 45555554433322 1122344555566666665422110000011112367788888888888661
Q ss_pred cccCCcccHHHHh-hcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccc
Q 039852 555 EETRKNEDDQLLL-EALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEI 633 (731)
Q Consensus 555 ~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 633 (731)
...... ..+..+++|++|++++|.+.+..| .+.+..+++|++|+|++|. ++.+|..+
T Consensus 215 -------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~~l~~L~~L~Ls~N~-l~~ip~~~----- 272 (312)
T 1wwl_A 215 -------TPSGVCSALAAARVQLQGLDLSHNSLRDAAG---------APSCDWPSQLNSLNLSFTG-LKQVPKGL----- 272 (312)
T ss_dssp -------CHHHHHHHHHHTTCCCSEEECTTSCCCSSCC---------CSCCCCCTTCCEEECTTSC-CSSCCSSC-----
T ss_pred -------chHHHHHHHHhcCCCCCEEECCCCcCCcccc---------hhhhhhcCCCCEEECCCCc-cChhhhhc-----
Confidence 111222 222356899999999998876222 1235568999999999865 66666533
Q ss_pred cccCcccceeeccccccccccccccccccccccccCcccceeeecccc
Q 039852 634 IIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCP 681 (731)
Q Consensus 634 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~ 681 (731)
+++|+.|+++++ +++.++. . ..+++|++|++++++
T Consensus 273 ---~~~L~~L~Ls~N-~l~~~p~-~--------~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 ---PAKLSVLDLSYN-RLDRNPS-P--------DELPQVGNLSLKGNP 307 (312)
T ss_dssp ---CSEEEEEECCSS-CCCSCCC-T--------TTSCEEEEEECTTCT
T ss_pred ---cCCceEEECCCC-CCCCChh-H--------hhCCCCCEEeccCCC
Confidence 289999999987 5666643 2 279999999999864
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=7.4e-16 Score=167.24 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=102.4
Q ss_pred ccchhhhhccccccEEeecCCccc-cccccccCCCce-------------eEEeccCCcCcccCcccccCCCCcceeecc
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIV-QLSETLCELYIL-------------EKLDISYCMDLEELPEGIKKLINMRHLLND 464 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~ 464 (731)
+.+|.+|++|++|++|++++|.+. .+|.+++++.+| ++|++++|. +..+|.. .++|++|+++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~---~~~L~~L~l~ 99 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL---PPHLESLVAS 99 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC---CTTCSEEECC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC---cCCCCEEEcc
Confidence 568888888888888888888876 788888888775 888888854 6677762 4678888888
Q ss_pred CCccccccccccCCCCCCCccCceEeCCCCCcCCCcccccccccCC-CCCCcccccCCCCCCChhhhhhccccccccCCc
Q 039852 465 GTDTLRYMVVGIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNL-EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSY 543 (731)
Q Consensus 465 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 543 (731)
+| .+..+|.. +++|+.|++..+. +..++.+ ++|+.|.+++.. ... .+ .+.++++|+.
T Consensus 100 ~n-~l~~lp~~---~~~L~~L~l~~n~------------l~~l~~~~~~L~~L~L~~n~----l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 100 CN-SLTELPEL---PQSLKSLLVDNNN------------LKALSDLPPLLEYLGVSNNQ----LEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp SS-CCSSCCCC---CTTCCEEECCSSC------------CSCCCSCCTTCCEEECCSSC----CSS-CC-CCTTCTTCCE
T ss_pred CC-cCCccccc---cCCCcEEECCCCc------------cCcccCCCCCCCEEECcCCC----CCC-Cc-ccCCCCCCCE
Confidence 87 55567754 3566666653322 1222222 577777776532 112 22 4778888999
Q ss_pred eEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccc
Q 039852 544 LRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGM 618 (731)
Q Consensus 544 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~ 618 (731)
|++++|.... ++. .+.+|++|++++|...+ +|. ++.+++|++|++++|
T Consensus 158 L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~-l~~-----------~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 158 IDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEE-LPE-----------LQNLPFLTAIYADNN 205 (454)
T ss_dssp EECCSSCCSC------------CCC---CCTTCCEEECCSSCCSS-CCC-----------CTTCTTCCEEECCSS
T ss_pred EECCCCcCcc------------cCC---CcccccEEECcCCcCCc-Ccc-----------ccCCCCCCEEECCCC
Confidence 9998886611 111 12588999999888776 653 455566666666554
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.7e-15 Score=166.08 Aligned_cols=226 Identities=16% Similarity=0.118 Sum_probs=166.6
Q ss_pred ccccccccCCC----ceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccccCCCCCCCccCceEeCCCCCc
Q 039852 422 VQLSETLCELY----ILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFHVSGGGGV 496 (731)
Q Consensus 422 ~~lp~~i~~L~----~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~ 496 (731)
..+|..+..+. +|++|+|++|. +..+ |..|+.+++|++|++++| .+...++ ++.+++|+.|++..+
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N------ 90 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN------ 90 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSS------
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCC------
Confidence 35666666655 89999999965 5555 568999999999999999 4554444 888899988877432
Q ss_pred CCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCC
Q 039852 497 DGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDL 576 (731)
Q Consensus 497 ~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 576 (731)
.+..++..++|+.|.+++..- .... ...+++|+.|++++|... ...+..+..+++|
T Consensus 91 ------~l~~l~~~~~L~~L~L~~N~l----~~~~---~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L 146 (487)
T 3oja_A 91 ------YVQELLVGPSIETLHAANNNI----SRVS---CSRGQGKKNIYLANNKIT-----------MLRDLDEGCRSRV 146 (487)
T ss_dssp ------EEEEEEECTTCCEEECCSSCC----CCEE---ECCCSSCEEEECCSSCCC-----------SGGGBCGGGGSSE
T ss_pred ------cCCCCCCCCCcCEEECcCCcC----CCCC---ccccCCCCEEECCCCCCC-----------CCCchhhcCCCCC
Confidence 344555667888888876322 1111 124578999999998771 1223345567899
Q ss_pred ceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecccccccccccc
Q 039852 577 KKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDY 656 (731)
Q Consensus 577 ~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 656 (731)
+.|++++|.+.+..|.++. +.+++|++|+|++|. ++.++.. ..+++|+.|+++++ .+..++.
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~---------~~l~~L~~L~Ls~N~-l~~~~~~-------~~l~~L~~L~Ls~N-~l~~~~~ 208 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELA---------ASSDTLEHLNLQYNF-IYDVKGQ-------VVFAKLKTLDLSSN-KLAFMGP 208 (487)
T ss_dssp EEEECTTSCCCEEEGGGGG---------GGTTTCCEEECTTSC-CCEEECC-------CCCTTCCEEECCSS-CCCEECG
T ss_pred CEEECCCCCCCCcChHHHh---------hhCCcccEEecCCCc-ccccccc-------ccCCCCCEEECCCC-CCCCCCH
Confidence 9999999998773444321 258999999999876 6555432 35899999999998 5666554
Q ss_pred ccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCchh
Q 039852 657 GITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCGLL 707 (731)
Q Consensus 657 ~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~~L 707 (731)
.. ..+++|+.|++++| .+..+|..+..+++|+.|++++|+..
T Consensus 209 ~~--------~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 209 EF--------QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GG--------GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred hH--------cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 32 37899999999995 68889988999999999999998754
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=2.7e-14 Score=145.34 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=125.8
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccccCCCCCCC
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLR 483 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 483 (731)
++++.+|+.++++++.++.+|..+. .+|++|++++|. +..+ |..+..+++|++|++++| .+..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 6778889999999999999998775 689999999955 5444 566888999999999888 44444432 3333333
Q ss_pred ccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccH
Q 039852 484 TLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDD 563 (731)
Q Consensus 484 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 563 (731)
.|++ ++ |..
T Consensus 81 ~L~L-------------------------------s~----------------------------N~l------------ 89 (290)
T 1p9a_G 81 TLDL-------------------------------SH----------------------------NQL------------ 89 (290)
T ss_dssp EEEC-------------------------------CS----------------------------SCC------------
T ss_pred EEEC-------------------------------CC----------------------------CcC------------
Confidence 3332 21 111
Q ss_pred HHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccccee
Q 039852 564 QLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSL 643 (731)
Q Consensus 564 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L 643 (731)
..++..+..+++|++|++++|.+.. +|. ..++.+++|++|+|+++. ++.++...+ ..+++|+.|
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~-l~~---------~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l~~L~~L 153 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTS-LPL---------GALRGLGELQELYLKGNE-LKTLPPGLL-----TPTPKLEKL 153 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCC-CCS---------STTTTCTTCCEEECTTSC-CCCCCTTTT-----TTCTTCCEE
T ss_pred CcCchhhccCCCCCEEECCCCcCcc-cCH---------HHHcCCCCCCEEECCCCC-CCccChhhc-----ccccCCCEE
Confidence 0001112334555666666665554 332 124556677777776643 555554432 345677777
Q ss_pred eccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 644 LIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 644 ~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
+++++ ++..++.... ..+++|++|++++| .++.+|..+..+++|+.|+++++|
T Consensus 154 ~L~~N-~l~~l~~~~~-------~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 154 SLANN-NLTELPAGLL-------NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECTTS-CCSCCCTTTT-------TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ECCCC-cCCccCHHHh-------cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 77766 4555554322 25778888888774 677888777777788888888655
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=7.2e-16 Score=161.18 Aligned_cols=212 Identities=13% Similarity=0.057 Sum_probs=134.4
Q ss_pred hhcc--ccccEEeecCCccccccccccCCCceeEEeccCCcCccc-CcccccCCCCcceeeccCCccccccccccCCCCC
Q 039852 405 IEKL--VHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEE-LPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTG 481 (731)
Q Consensus 405 i~~L--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 481 (731)
+..+ .++++|++++|.+...+..+.++.+|++|++++|..... +|..+..+++|++|++++|......|..++.+++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 4445 788999999999888877788899999999999763323 7778889999999999998533356667778888
Q ss_pred CCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccc-cCCceEEEEec--CCCCcccC
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK-YLSYLRLEFDK--KKEGEETR 558 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~--~~~~~~~~ 558 (731)
|+.|++..+..-+ +......+.++++|+.|++++...+.. ......+..++ +|+.|++++|. .
T Consensus 144 L~~L~L~~~~~l~-----~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~------- 209 (336)
T 2ast_B 144 LVRLNLSGCSGFS-----EFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNL------- 209 (336)
T ss_dssp CSEEECTTCBSCC-----HHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGS-------
T ss_pred CCEEECCCCCCCC-----HHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccC-------
Confidence 8888775442111 011223356677777777776433321 12334456677 78888887773 2
Q ss_pred CcccHHHHhhcCCCCCCCceEEEeeecC-CCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 559 KNEDDQLLLEALRPPLDLKKLEIRYYRG-NTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 559 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
....+...+..+++|++|++++|.. ....+ +.++.+++|++|+|++|..+....-.. ...+
T Consensus 210 ---~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----------~~l~~l~~L~~L~l~~~~~~~~~~~~~-----l~~~ 271 (336)
T 2ast_B 210 ---QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----------QEFFQLNYLQHLSLSRCYDIIPETLLE-----LGEI 271 (336)
T ss_dssp ---CHHHHHHHHHHCTTCSEEECTTCTTCCGGGG----------GGGGGCTTCCEEECTTCTTCCGGGGGG-----GGGC
T ss_pred ---CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH----------HHHhCCCCCCEeeCCCCCCCCHHHHHH-----HhcC
Confidence 1123333444567788888887763 22122 234556788888887775332111101 2357
Q ss_pred cccceeecccc
Q 039852 638 PKLKSLLIEDL 648 (731)
Q Consensus 638 ~~L~~L~l~~~ 648 (731)
++|+.|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 77777777776
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=1.6e-14 Score=148.50 Aligned_cols=191 Identities=18% Similarity=0.229 Sum_probs=124.9
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
+..+.+|++|++++|.+..+| .+..+.+|++|++++| .+..+|. +..+++|++|++++| .+..+| .+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCE
Confidence 556889999999999999887 6889999999999995 5777777 899999999999998 466654 5777788887
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+... .+..+..+++|+.|.+++..- ... . .+..+++|+.|+++.|....
T Consensus 112 L~l~~n~l~---------~~~~l~~l~~L~~L~l~~n~l-~~~---~--~l~~l~~L~~L~l~~n~l~~----------- 165 (308)
T 1h6u_A 112 LDLTSTQIT---------DVTPLAGLSNLQVLYLDLNQI-TNI---S--PLAGLTNLQYLSIGNAQVSD----------- 165 (308)
T ss_dssp EECTTSCCC---------CCGGGTTCTTCCEEECCSSCC-CCC---G--GGGGCTTCCEEECCSSCCCC-----------
T ss_pred EECCCCCCC---------CchhhcCCCCCCEEECCCCcc-CcC---c--cccCCCCccEEEccCCcCCC-----------
Confidence 776443322 223466666777766665321 111 1 15566677777776665410
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceee
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLL 644 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~ 644 (731)
+..+..+++|+.|++++|.... +|. +..+++|++|+|++|. ++.++. ...+++|+.|+
T Consensus 166 --~~~l~~l~~L~~L~l~~n~l~~-~~~-----------l~~l~~L~~L~L~~N~-l~~~~~-------l~~l~~L~~L~ 223 (308)
T 1h6u_A 166 --LTPLANLSKLTTLKADDNKISD-ISP-----------LASLPNLIEVHLKNNQ-ISDVSP-------LANTSNLFIVT 223 (308)
T ss_dssp --CGGGTTCTTCCEEECCSSCCCC-CGG-----------GGGCTTCCEEECTTSC-CCBCGG-------GTTCTTCCEEE
T ss_pred --ChhhcCCCCCCEEECCCCccCc-Chh-----------hcCCCCCCEEEccCCc-cCcccc-------ccCCCCCCEEE
Confidence 1114556667777777766554 332 3456677777776643 443332 13566666666
Q ss_pred cccc
Q 039852 645 IEDL 648 (731)
Q Consensus 645 l~~~ 648 (731)
++++
T Consensus 224 l~~N 227 (308)
T 1h6u_A 224 LTNQ 227 (308)
T ss_dssp EEEE
T ss_pred ccCC
Confidence 6665
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=3.3e-14 Score=143.39 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=55.4
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccccccccc-CCCCCCCccCc
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVVGI-GRLTGLRTLGE 487 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i-~~L~~L~~L~~ 487 (731)
..++++++++.++.+|..+. .+|+.|++++| .+..+|. .+.++++|++|++++| .+..+|.++ ..+++|+.|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 46788888888888887665 57888888884 4666664 5788888888888887 556666653 66777777766
Q ss_pred eE
Q 039852 488 FH 489 (731)
Q Consensus 488 ~~ 489 (731)
..
T Consensus 93 ~~ 94 (270)
T 2o6q_A 93 TD 94 (270)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=9.3e-16 Score=160.33 Aligned_cols=253 Identities=14% Similarity=0.116 Sum_probs=172.5
Q ss_pred cccEEeecCCccccccccccCC--CceeEEeccCCcCcccCcccccCCCCcceeeccCCccccc-cccccCCCCCCCccC
Q 039852 410 HLRYLNLSGQDIVQLSETLCEL--YILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRY-MVVGIGRLTGLRTLG 486 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L--~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-~p~~i~~L~~L~~L~ 486 (731)
.++.|+++++.+. |..+..+ .+++.|++++| .+...+..+..+++|++|++++|..... +|..+..+++|+.|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4789999998876 5667777 89999999994 5666666688899999999999943223 777788999999998
Q ss_pred ceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEe-cCCCCcccCCcccHHH
Q 039852 487 EFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFD-KKKEGEETRKNEDDQL 565 (731)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~ 565 (731)
+..+... ...+..+.++++|+.|++++...+.. ......+.++++|+.|++++| .. ....
T Consensus 125 L~~~~l~-------~~~~~~l~~~~~L~~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l----------~~~~ 185 (336)
T 2ast_B 125 LEGLRLS-------DPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDF----------TEKH 185 (336)
T ss_dssp CTTCBCC-------HHHHHHHTTCTTCSEEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTC----------CHHH
T ss_pred CcCcccC-------HHHHHHHhcCCCCCEEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCc----------ChHH
Confidence 8654322 33455677889999999987544332 124445678899999999998 55 1222
Q ss_pred HhhcCCCCC-CCceEEEeeec--CC-CCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccc
Q 039852 566 LLEALRPPL-DLKKLEIRYYR--GN-TVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLK 641 (731)
Q Consensus 566 ~~~~l~~~~-~L~~L~l~~~~--~~-~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~ 641 (731)
....+..++ +|++|++++|. .. ..+|.. ++.+++|++|+|++|..++...... ...+++|+
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~----------~~~~~~L~~L~l~~~~~l~~~~~~~-----l~~l~~L~ 250 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTL----------VRRCPNLVHLDLSDSVMLKNDCFQE-----FFQLNYLQ 250 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH----------HHHCTTCSEEECTTCTTCCGGGGGG-----GGGCTTCC
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHH----------HhhCCCCCEEeCCCCCcCCHHHHHH-----HhCCCCCC
Confidence 344455667 99999999984 22 113432 3458999999999987554322222 24679999
Q ss_pred eeeccccccccccccccccccccccccCcccceeeecccccCcCCCC-CCCCC-CCccEEEEccCchhHHhhc
Q 039852 642 SLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD-YIHQT-TTLKELRILMCGLLKERYR 712 (731)
Q Consensus 642 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~~~l-~~L~~L~l~~c~~L~~~~~ 712 (731)
.|++++|..+...... .+..+|+|++|++++| +|. .+..+ .+|+.|+++ |+.+.....
T Consensus 251 ~L~l~~~~~~~~~~~~-------~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 251 HLSLSRCYDIIPETLL-------ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp EEECTTCTTCCGGGGG-------GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred EeeCCCCCCCCHHHHH-------HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccccC
Confidence 9999998633222111 1337999999999998 443 22222 235666675 444544443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=4.7e-14 Score=142.82 Aligned_cols=84 Identities=23% Similarity=0.422 Sum_probs=51.2
Q ss_pred cchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccc-ccc
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMV-VGI 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p-~~i 476 (731)
.+|..+. .+|++|+|++|.++.+|. .+.++.+|++|++++| .+..+|. .+..+++|++|++++| .+..++ ..+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 96 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCccChhhh
Confidence 3454442 467777777777776665 5777777777777774 3544443 5677777777777777 333333 334
Q ss_pred CCCCCCCccCc
Q 039852 477 GRLTGLRTLGE 487 (731)
Q Consensus 477 ~~L~~L~~L~~ 487 (731)
..+++|+.|.+
T Consensus 97 ~~l~~L~~L~l 107 (276)
T 2z62_A 97 SGLSSLQKLVA 107 (276)
T ss_dssp TTCTTCCEEEC
T ss_pred cCCccccEEEC
Confidence 55555555443
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=2.3e-13 Score=152.41 Aligned_cols=224 Identities=19% Similarity=0.136 Sum_probs=156.7
Q ss_pred ccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCce
Q 039852 409 VHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEF 488 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 488 (731)
.++++|+++++.++.+|..+. .+|++|++++| .+..+|. .+++|++|++++| .+..+|. .+++|+.|++.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 468999999999999999887 79999999995 5888987 6789999999999 5778887 66788888775
Q ss_pred EeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhh
Q 039852 489 HVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLE 568 (731)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 568 (731)
.+.... +.. .+.+|+.|.+++.. +... +. .+++|+.|++++|.... ++
T Consensus 110 ~N~l~~---------l~~--~l~~L~~L~L~~N~-l~~l----p~---~l~~L~~L~Ls~N~l~~------------l~- 157 (622)
T 3g06_A 110 SNPLTH---------LPA--LPSGLCKLWIFGNQ-LTSL----PV---LPPGLQELSVSDNQLAS------------LP- 157 (622)
T ss_dssp SCCCCC---------CCC--CCTTCCEEECCSSC-CSCC----CC---CCTTCCEEECCSSCCSC------------CC-
T ss_pred CCcCCC---------CCC--CCCCcCEEECCCCC-CCcC----CC---CCCCCCEEECcCCcCCC------------cC-
Confidence 543321 111 45677777776532 1111 11 24789999999987611 11
Q ss_pred cCCCCCCCceEEEeeecCCCCCccchhhc--c-------cCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcc
Q 039852 569 ALRPPLDLKKLEIRYYRGNTVFRSLLVQK--L-------RAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPK 639 (731)
Q Consensus 569 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~~--L-------~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~ 639 (731)
..+++|+.|++++|.+.. +|..+..+ | ..+|. .+++|+.|++++|. ++.++. .+++
T Consensus 158 --~~~~~L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~-l~~l~~---------~~~~ 222 (622)
T 3g06_A 158 --ALPSELCKLWAYNNQLTS-LPMLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNR-LTSLPA---------LPSG 222 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSSCCC---------CCTT
T ss_pred --CccCCCCEEECCCCCCCC-CcccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCCc-ccccCC---------CCCC
Confidence 135789999999999887 77432222 1 22222 24566666665543 333322 3477
Q ss_pred cceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEEEEccCc
Q 039852 640 LKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 640 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~l~~c~ 705 (731)
|+.|+++++ ++..++ . .+++|++|++++| +++.+|. .+++|+.|++++|.
T Consensus 223 L~~L~Ls~N-~L~~lp---~--------~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 223 LKELIVSGN-RLTSLP---V--------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCEEECCSS-CCSCCC---C--------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCEEEccCC-ccCcCC---C--------CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 888888877 566555 1 6789999999996 7888987 47899999999985
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=2e-14 Score=145.59 Aligned_cols=222 Identities=16% Similarity=0.130 Sum_probs=151.4
Q ss_pred EEeecCCccccccccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccccccc-ccCCCCCCCccCceEe
Q 039852 413 YLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVV-GIGRLTGLRTLGEFHV 490 (731)
Q Consensus 413 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~ 490 (731)
+.+.++..+..+|..+. .+|++|++++| .+..+|. .+.++++|++|++++| .+..++. .+..+++|+.|++..+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC
Confidence 45666677888888765 57999999995 4666665 6889999999999998 5556655 5788888888877544
Q ss_pred CCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhcC
Q 039852 491 SGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEAL 570 (731)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l 570 (731)
... ......+.++++|+.|.+.+..- .......+..+++|+.|++++|.... ...+..+
T Consensus 87 ~l~-------~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~l~~~~ 145 (276)
T 2z62_A 87 PIQ-------SLALGAFSGLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQS----------FKLPEYF 145 (276)
T ss_dssp CCC-------EECTTTTTTCTTCCEEECTTSCC----CCSTTCCCTTCTTCCEEECCSSCCCC----------CCCCGGG
T ss_pred ccC-------ccChhhhcCCccccEEECCCCCc----cccCchhcccCCCCCEEECcCCccce----------ecCchhh
Confidence 332 22334567788888888765322 22223347788999999999887611 0123456
Q ss_pred CCCCCCceEEEeeecCCCCCc-cchhhcccCCCCCCCCCCcc-eeeeccccCceEeCcccccccccccCcccceeecccc
Q 039852 571 RPPLDLKKLEIRYYRGNTVFR-SLLVQKLRAAASFGKMPSLE-KLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDL 648 (731)
Q Consensus 571 ~~~~~L~~L~l~~~~~~~~lp-~~~~~~L~~l~~l~~l~~L~-~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~ 648 (731)
..+++|++|++++|.+.+ +| ..+.. +..++.|. +|+++++. ++.++...+ ...+|+.|+++++
T Consensus 146 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~-------l~~L~~l~l~L~ls~n~-l~~~~~~~~------~~~~L~~L~L~~n 210 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQS-IYCTDLRV-------LHQMPLLNLSLDLSLNP-MNFIQPGAF------KEIRLKELALDTN 210 (276)
T ss_dssp GGCTTCCEEECCSSCCCE-ECGGGGHH-------HHTCTTCCEEEECCSSC-CCEECTTSS------CSCCEEEEECCSS
T ss_pred ccCCCCCEEECCCCCCCc-CCHHHhhh-------hhhccccceeeecCCCc-ccccCcccc------CCCcccEEECCCC
Confidence 667899999999998876 43 32221 12233333 78888754 667766543 3458999999988
Q ss_pred ccccccccccccccccccccCcccceeeeccccc
Q 039852 649 LELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPK 682 (731)
Q Consensus 649 ~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~ 682 (731)
.+..++.... ..+++|++|++++++-
T Consensus 211 -~l~~~~~~~~-------~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 211 -QLKSVPDGIF-------DRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -CCSCCCTTTT-------TTCCSCCEEECCSSCB
T ss_pred -ceeecCHhHh-------cccccccEEEccCCcc
Confidence 4776665432 2789999999998753
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=1.9e-14 Score=145.30 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=142.5
Q ss_pred hhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc-cCCCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGL 482 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L 482 (731)
....+.+|+.|+++++.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++| .+..+|.. ++.+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 4667889999999999988876 58889999999999954 66665 6889999999999998 55555554 5667777
Q ss_pred CccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCccc
Q 039852 483 RTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNED 562 (731)
Q Consensus 483 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 562 (731)
+.|++..+... ......+..+++|+.|++++|...
T Consensus 112 ~~L~L~~n~l~-----------------------------------~~~~~~~~~l~~L~~L~L~~n~l~---------- 146 (272)
T 3rfs_A 112 KELVLVENQLQ-----------------------------------SLPDGVFDKLTNLTYLNLAHNQLQ---------- 146 (272)
T ss_dssp CEEECTTSCCC-----------------------------------CCCTTTTTTCTTCCEEECCSSCCC----------
T ss_pred CEEECCCCcCC-----------------------------------ccCHHHhccCCCCCEEECCCCccC----------
Confidence 76665322211 111112345566667777666541
Q ss_pred HHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccce
Q 039852 563 DQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKS 642 (731)
Q Consensus 563 ~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~ 642 (731)
......+..+++|++|++++|.+.+ +|.. .++.+++|++|++++|. ++.++...+ ..+++|+.
T Consensus 147 -~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~---------~~~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l~~L~~ 209 (272)
T 3rfs_A 147 -SLPKGVFDKLTNLTELDLSYNQLQS-LPEG---------VFDKLTQLKDLRLYQNQ-LKSVPDGVF-----DRLTSLQY 209 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCCC-CCTT---------TTTTCTTCCEEECCSSC-CSCCCTTTT-----TTCTTCCE
T ss_pred -ccCHHHhccCccCCEEECCCCCcCc-cCHH---------HhcCCccCCEEECCCCc-CCccCHHHH-----hCCcCCCE
Confidence 1112234567788888888887766 4431 25678888888888765 555555432 46788888
Q ss_pred eeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCC
Q 039852 643 LLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTT 695 (731)
Q Consensus 643 L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~ 695 (731)
|++++++- . +.+|+|+.|.++.+..-..+|..++.++.
T Consensus 210 L~l~~N~~----~-----------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 210 IWLHDNPW----D-----------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp EECCSSCB----C-----------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EEccCCCc----c-----------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 88887731 1 16788888888887666778877665544
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=5.9e-14 Score=147.24 Aligned_cols=230 Identities=14% Similarity=0.074 Sum_probs=156.7
Q ss_pred ccchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCcccccccc-c
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVV-G 475 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~ 475 (731)
..+|..+ ..++++|+|++|.|+.+|. .+.+|++|++|+|++|...+.+|.. |.++++|+++...++..+..+|. .
T Consensus 22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 4567665 3689999999999999987 5899999999999997766777764 78899988765554447777755 4
Q ss_pred cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhcccccc-ccCCceEEEEecCCCC
Q 039852 476 IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKK-KYLSYLRLEFDKKKEG 554 (731)
Q Consensus 476 i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~ 554 (731)
+..+++|+.|++..+.... . .........++..+.+.....+.. .....+..+ ..++.|+++.|..
T Consensus 100 f~~l~~L~~L~l~~n~l~~------~-~~~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~N~i--- 166 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKH------L-PDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGI--- 166 (350)
T ss_dssp BCCCTTCCEEEEEEECCSS------C-CCCTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCSSCC---
T ss_pred hhhcccccccccccccccc------C-Cchhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhccccccc---
Confidence 7889999999987765442 1 111112222344455543222221 111223333 4678889988876
Q ss_pred cccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccc
Q 039852 555 EETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEII 634 (731)
Q Consensus 555 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 634 (731)
..+........+|++|.+.++...+.+|.. .++.+++|++|+|+++ .++.+|.
T Consensus 167 ---------~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~---------~f~~l~~L~~LdLs~N-~l~~lp~-------- 219 (350)
T 4ay9_X 167 ---------QEIHNSAFNGTQLDELNLSDNNNLEELPND---------VFHGASGPVILDISRT-RIHSLPS-------- 219 (350)
T ss_dssp ---------CEECTTSSTTEEEEEEECTTCTTCCCCCTT---------TTTTEECCSEEECTTS-CCCCCCS--------
T ss_pred ---------cCCChhhccccchhHHhhccCCcccCCCHH---------HhccCcccchhhcCCC-CcCccCh--------
Confidence 122333334567899999865544436652 3678999999999986 4777775
Q ss_pred ccCcccceeeccccccccccccccccccccccccCcccceeeecc
Q 039852 635 IAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKW 679 (731)
Q Consensus 635 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~ 679 (731)
..|.+|+.|.+.++.+++.+|.- ..|++|+.+++.+
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~l---------~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPTL---------EKLVALMEASLTY 255 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCCT---------TTCCSCCEEECSC
T ss_pred hhhccchHhhhccCCCcCcCCCc---------hhCcChhhCcCCC
Confidence 35788888888888888888742 2799999999855
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.1e-13 Score=139.64 Aligned_cols=184 Identities=23% Similarity=0.301 Sum_probs=116.0
Q ss_pred cchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-c
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-I 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i 476 (731)
.+|..+. .+|++|+|++|.+..+|. .+.++.+|++|++++ +.+..+|.. +..+++|++|++++| .+..+|.. +
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 105 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVF 105 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHc
Confidence 4555443 579999999999998876 699999999999999 457788876 478999999999998 56666654 5
Q ss_pred CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcc
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEE 556 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 556 (731)
..+++|+.|++..+.... ..... +..+++|+.|++++|....
T Consensus 106 ~~l~~L~~L~l~~n~l~~-------~~~~~----------------------------~~~l~~L~~L~Ls~n~l~~--- 147 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKS-------LPPRV----------------------------FDSLTKLTYLSLGYNELQS--- 147 (270)
T ss_dssp TTCSSCCEEECCSSCCCC-------CCTTT----------------------------TTTCTTCCEEECCSSCCCC---
T ss_pred ccccCCCEEECCCCccCe-------eCHHH----------------------------hCcCcCCCEEECCCCcCCc---
Confidence 677777777664332211 11112 2344455555555554310
Q ss_pred cCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCccccccccccc
Q 039852 557 TRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIA 636 (731)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 636 (731)
.....+..+++|++|++++|.+.. +|.. .++.+++|++|+|+++ .++.++...+ ..
T Consensus 148 --------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~---------~~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~ 203 (270)
T 2o6q_A 148 --------LPKGVFDKLTSLKELRLYNNQLKR-VPEG---------AFDKLTELKTLKLDNN-QLKRVPEGAF-----DS 203 (270)
T ss_dssp --------CCTTTTTTCTTCCEEECCSSCCSC-CCTT---------TTTTCTTCCEEECCSS-CCSCCCTTTT-----TT
T ss_pred --------cCHhHccCCcccceeEecCCcCcE-eChh---------HhccCCCcCEEECCCC-cCCcCCHHHh-----cc
Confidence 011224455666677776666554 3321 2455667777777664 3555555432 34
Q ss_pred Ccccceeeccccc
Q 039852 637 FPKLKSLLIEDLL 649 (731)
Q Consensus 637 f~~L~~L~l~~~~ 649 (731)
+++|+.|++++++
T Consensus 204 l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 204 LEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEecCCC
Confidence 6667777776653
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=1e-13 Score=139.96 Aligned_cols=181 Identities=23% Similarity=0.262 Sum_probs=124.1
Q ss_pred hhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-cCCCC
Q 039852 403 RNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-IGRLT 480 (731)
Q Consensus 403 ~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~ 480 (731)
..++.+++|++|+|++|.+..++ .++++++|++|++++| .+..+|.. +..+++|++|++++| .+..+|.. ++.++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLT 133 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCT
T ss_pred cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCC
Confidence 35889999999999999999875 8899999999999996 46666655 789999999999999 55666654 67778
Q ss_pred CCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCc
Q 039852 481 GLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKN 560 (731)
Q Consensus 481 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 560 (731)
+|+.|++..+.... . ....+..+++|+.|++++|...
T Consensus 134 ~L~~L~L~~n~l~~-------~----------------------------~~~~~~~l~~L~~L~l~~n~l~-------- 170 (272)
T 3rfs_A 134 NLTYLNLAHNQLQS-------L----------------------------PKGVFDKLTNLTELDLSYNQLQ-------- 170 (272)
T ss_dssp TCCEEECCSSCCCC-------C----------------------------CTTTTTTCTTCCEEECCSSCCC--------
T ss_pred CCCEEECCCCccCc-------c----------------------------CHHHhccCccCCEEECCCCCcC--------
Confidence 88777664332110 0 0112334556666666666541
Q ss_pred ccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccc
Q 039852 561 EDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKL 640 (731)
Q Consensus 561 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L 640 (731)
......+..+++|++|++++|.+.+ +|. ..++.+++|++|+|++++-. ..+|+|
T Consensus 171 ---~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---------~~~~~l~~L~~L~l~~N~~~-------------~~~~~l 224 (272)
T 3rfs_A 171 ---SLPEGVFDKLTQLKDLRLYQNQLKS-VPD---------GVFDRLTSLQYIWLHDNPWD-------------CTCPGI 224 (272)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCSC-CCT---------TTTTTCTTCCEEECCSSCBC-------------CCTTTT
T ss_pred ---ccCHHHhcCCccCCEEECCCCcCCc-cCH---------HHHhCCcCCCEEEccCCCcc-------------ccCcHH
Confidence 1112234567788888888888776 443 13567888899998876421 246778
Q ss_pred ceeeccccccccccc
Q 039852 641 KSLLIEDLLELEEWD 655 (731)
Q Consensus 641 ~~L~l~~~~~l~~~~ 655 (731)
+.|.++.+..-..++
T Consensus 225 ~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 225 RYLSEWINKHSGVVR 239 (272)
T ss_dssp HHHHHHHHHTGGGBB
T ss_pred HHHHHHHHhCCCccc
Confidence 888777653333333
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=5.6e-15 Score=157.52 Aligned_cols=199 Identities=17% Similarity=0.107 Sum_probs=114.0
Q ss_pred cchhhhhccccccEEeecCCcccc-----ccccccCCCceeEEeccCCc--Cc-ccCcccc-------cCCCCcceeecc
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQ-----LSETLCELYILEKLDISYCM--DL-EELPEGI-------KKLINMRHLLND 464 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~c~--~l-~~lp~~i-------~~L~~L~~L~l~ 464 (731)
.++..+..+++|++|+|++|.+.. ++..+.++++|++|+|++|. .+ ..+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 466778888999999999998774 44557789999999999862 22 2445554 688999999999
Q ss_pred CCcccc----ccccccCCCCCCCccCceEeCCCCCcCCCcc-cccccccCC---------CCCCcccccCCCCCCChhhh
Q 039852 465 GTDTLR----YMVVGIGRLTGLRTLGEFHVSGGGGVDGRKA-CRLESLKNL---------EHLQVCGIRRLGDVSDVGEA 530 (731)
Q Consensus 465 ~~~~~~----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~-~~~~~l~~L---------~~L~~L~i~~l~~~~~~~~~ 530 (731)
+|.... .+|..+..+++|+.|++..+.... ... .....+..+ ++|+.|.+++..-.......
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP----QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH----HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH----HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 884322 266677778888888764433210 000 011112233 56666666552211011111
Q ss_pred hhccccccccCCceEEEEecCCCCcccCCcccHHHHhh-cCCCCCCCceEEEeeecCC----CCCccchhhcccCCCCCC
Q 039852 531 KRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLE-ALRPPLDLKKLEIRYYRGN----TVFRSLLVQKLRAAASFG 605 (731)
Q Consensus 531 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~----~~lp~~~~~~L~~l~~l~ 605 (731)
....+..+++|+.|++++|.... ........ .+..+++|++|+|++|.+. ..+|.+ +.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~-------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----------l~ 241 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA----------LK 241 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCH-------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH----------GG
T ss_pred HHHHHHhCCCcCEEECcCCCCCH-------hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH----------Hc
Confidence 11344556677777776665400 00111222 5555666777777666542 113332 33
Q ss_pred CCCCcceeeecccc
Q 039852 606 KMPSLEKLHIWGMK 619 (731)
Q Consensus 606 ~l~~L~~L~L~~~~ 619 (731)
.+++|++|+|++|.
T Consensus 242 ~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 242 SWPNLRELGLNDCL 255 (386)
T ss_dssp GCTTCCEEECTTCC
T ss_pred cCCCcCEEECCCCC
Confidence 46667777776654
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=1.8e-13 Score=140.69 Aligned_cols=180 Identities=18% Similarity=0.184 Sum_probs=139.9
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
.+| .+..+++|++|+|++|.+..+|. +.++++|++|++++|. +..+| .+..+++|++|++++| .+..+|. +..+
T Consensus 55 ~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l 128 (308)
T 1h6u_A 55 TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGL 128 (308)
T ss_dssp CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTC
T ss_pred Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCC
Confidence 344 58889999999999999999987 9999999999999954 77776 6999999999999999 5666765 8889
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCC
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRK 559 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 559 (731)
++|+.|++..+... .+..+..+++|+.|.+++..- .. .. .+..+++|+.|++++|....
T Consensus 129 ~~L~~L~l~~n~l~---------~~~~l~~l~~L~~L~l~~n~l-~~---~~--~l~~l~~L~~L~l~~n~l~~------ 187 (308)
T 1h6u_A 129 SNLQVLYLDLNQIT---------NISPLAGLTNLQYLSIGNAQV-SD---LT--PLANLSKLTTLKADDNKISD------ 187 (308)
T ss_dssp TTCCEEECCSSCCC---------CCGGGGGCTTCCEEECCSSCC-CC---CG--GGTTCTTCCEEECCSSCCCC------
T ss_pred CCCCEEECCCCccC---------cCccccCCCCccEEEccCCcC-CC---Ch--hhcCCCCCCEEECCCCccCc------
Confidence 99999887655433 233477888999998886422 22 11 17788999999999987611
Q ss_pred cccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCc
Q 039852 560 NEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGD 626 (731)
Q Consensus 560 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~ 626 (731)
...+..+++|++|++++|.+.. +| ++..+++|++|++++++ ++..+.
T Consensus 188 -------~~~l~~l~~L~~L~L~~N~l~~-~~-----------~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 188 -------ISPLASLPNLIEVHLKNNQISD-VS-----------PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp -------CGGGGGCTTCCEEECTTSCCCB-CG-----------GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred -------ChhhcCCCCCCEEEccCCccCc-cc-----------cccCCCCCCEEEccCCe-eecCCe
Confidence 1125567899999999998876 44 35779999999999865 554443
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=3e-14 Score=161.16 Aligned_cols=81 Identities=11% Similarity=0.013 Sum_probs=43.3
Q ss_pred hccccccEEeecCCcccc-----ccccccCCCceeEEeccCCcCc----ccCcccccCCCCcceeeccCCcccccccccc
Q 039852 406 EKLVHLRYLNLSGQDIVQ-----LSETLCELYILEKLDISYCMDL----EELPEGIKKLINMRHLLNDGTDTLRYMVVGI 476 (731)
Q Consensus 406 ~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~c~~l----~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 476 (731)
.++++|++|+|++|.+.. ++..+.++++|++|++++|..- ..++..+.++++|++|++++| .+..+|..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHH
Confidence 455666666666665432 2233445566666666653321 233444455666666666665 344455555
Q ss_pred CCCCCCCccCc
Q 039852 477 GRLTGLRTLGE 487 (731)
Q Consensus 477 ~~L~~L~~L~~ 487 (731)
..+++|+.|.+
T Consensus 240 ~~~~~L~~L~l 250 (592)
T 3ogk_B 240 KAAANLEEFCG 250 (592)
T ss_dssp HHCTTCCEEEE
T ss_pred hhhhHHHhhcc
Confidence 55666665554
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=4.6e-15 Score=158.18 Aligned_cols=268 Identities=12% Similarity=0.045 Sum_probs=174.6
Q ss_pred ccccEEeecCCccccccccccCCCceeEEeccCCcCccc----CcccccCCCCcceeeccCCc--cc-ccccccc-----
Q 039852 409 VHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEE----LPEGIKKLINMRHLLNDGTD--TL-RYMVVGI----- 476 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~----lp~~i~~L~~L~~L~l~~~~--~~-~~~p~~i----- 476 (731)
..|++..++...+..++..+..+++|++|++++|..-.. ++..+..+++|++|++++|. .+ ..+|.++
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 356666666666778999999999999999999753332 44457789999999999872 11 2345554
Q ss_pred --CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhcccccc---------ccCCceE
Q 039852 477 --GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKK---------KYLSYLR 545 (731)
Q Consensus 477 --~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~---------~~L~~L~ 545 (731)
..+++|+.|++..+..... ........+.++++|+.|.+++..-.......+...+..+ ++|+.|+
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~---~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPT---AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTT---THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHhhCCcccEEECCCCcCCHH---HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 6888999888765543310 0002334667888999998887432100111222234444 8999999
Q ss_pred EEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCC-CccchhhcccCCC-CCCCCCCcceeeeccccCc--
Q 039852 546 LEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTV-FRSLLVQKLRAAA-SFGKMPSLEKLHIWGMKRV-- 621 (731)
Q Consensus 546 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-lp~~~~~~L~~l~-~l~~l~~L~~L~L~~~~~l-- 621 (731)
+++|.... .....+...+..+++|++|++++|.+... +... .+ .+..+++|++|+|++|. +
T Consensus 166 L~~n~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l-------~~~~l~~~~~L~~L~Ls~n~-l~~ 230 (386)
T 2ca6_A 166 CGRNRLEN-------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-------LLEGLAYCQELKVLDLQDNT-FTH 230 (386)
T ss_dssp CCSSCCTG-------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH-------HHTTGGGCTTCCEEECCSSC-CHH
T ss_pred CCCCCCCc-------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH-------HHHHhhcCCCccEEECcCCC-CCc
Confidence 99987610 11222334566678999999999976410 1001 11 35678999999999876 4
Q ss_pred ---eEeCcccccccccccCcccceeecccccccccccccccccccccc--ccCcccceeeecccccCcC-----CCCCC-
Q 039852 622 ---KKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVI--DIMPRLSSFEIKWCPKLKA-----LPDYI- 690 (731)
Q Consensus 622 ---~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~~p~L~~L~i~~c~~L~~-----lp~~~- 690 (731)
..++..+ ..+++|+.|++++|. +........ ...+ +.+++|++|++++|. +.. +|..+
T Consensus 231 ~g~~~l~~~l------~~~~~L~~L~L~~n~-i~~~~~~~l---~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 231 LGSSALAIAL------KSWPNLRELGLNDCL-LSARGAAAV---VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID 299 (386)
T ss_dssp HHHHHHHHHG------GGCTTCCEEECTTCC-CCHHHHHHH---HHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------ccCCCcCEEECCCCC-CchhhHHHH---HHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH
Confidence 3333322 467999999999984 433211000 0001 148999999999975 554 77666
Q ss_pred CCCCCccEEEEccCc
Q 039852 691 HQTTTLKELRILMCG 705 (731)
Q Consensus 691 ~~l~~L~~L~l~~c~ 705 (731)
.++++|++|++++|+
T Consensus 300 ~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHCTTCCEEECTTSB
T ss_pred hcCCCceEEEccCCc
Confidence 568999999999986
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.40 E-value=4.3e-15 Score=162.55 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=50.9
Q ss_pred CCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccc-cCcccceeeecccccCc--
Q 039852 608 PSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVID-IMPRLSSFEIKWCPKLK-- 684 (731)
Q Consensus 608 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~p~L~~L~i~~c~~L~-- 684 (731)
++|++|++++|. ++..+...+.. ....+++|++|+++++ .+.......... .+. ..++|++|++++| .++
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n-~i~~~ 385 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSS-VLAQNRFLLELQISNN-RLEDAGVRELCQ---GLGQPGSVLRVLWLADC-DVSDS 385 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHH-HHHHCSSCCEEECCSS-BCHHHHHHHHHH---HHTSTTCCCCEEECTTS-CCCHH
T ss_pred ccceeeEcCCCC-CchHHHHHHHH-HHhhCCCccEEEccCC-ccccccHHHHHH---HHcCCCCceEEEECCCC-CCChh
Confidence 466777776654 22211100000 0124477777777776 333221110000 000 2678999999997 455
Q ss_pred ---CCCCCCCCCCCccEEEEccCc
Q 039852 685 ---ALPDYIHQTTTLKELRILMCG 705 (731)
Q Consensus 685 ---~lp~~~~~l~~L~~L~l~~c~ 705 (731)
.+|..+..+++|++|++++|+
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hHHHHHHHHHhCCCccEEECCCCC
Confidence 567667778899999999987
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=3.6e-14 Score=160.56 Aligned_cols=264 Identities=16% Similarity=0.090 Sum_probs=138.7
Q ss_pred chhhhhccccccEEeecCCcc----ccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccc--ccc
Q 039852 401 IPRNIEKLVHLRYLNLSGQDI----VQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRY--MVV 474 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i----~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~--~p~ 474 (731)
+|..+..+++|++|++++... ...+..+..+.+|+.|++++ .....+|..+..+++|++|++++|. +.. ++.
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~ 312 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCT 312 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc-cchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHH
Confidence 444455555555555543211 12233445555555555555 2344556666667777777777764 221 112
Q ss_pred ccCCCCCCCccCceEeCCCCCcCCCcccccc-cccCCCCCCcccccC----------CCCCCChhhhhhccccccccCCc
Q 039852 475 GIGRLTGLRTLGEFHVSGGGGVDGRKACRLE-SLKNLEHLQVCGIRR----------LGDVSDVGEAKRLELDKKKYLSY 543 (731)
Q Consensus 475 ~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~L~i~~----------l~~~~~~~~~~~~~l~~~~~L~~ 543 (731)
-+..+++|+.|++... .. ...+. ....+++|+.|.+.+ +..+.. .........+++|+.
T Consensus 313 ~~~~~~~L~~L~L~~~-~~-------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNV-IG-------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEY 382 (592)
T ss_dssp HHTTCTTCCEEEEEGG-GH-------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH--HHHHHHHHHCTTCSE
T ss_pred HHHhCcCCCEEeccCc-cC-------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCH--HHHHHHHhhCccCeE
Confidence 2456667776665411 00 11121 124456677777663 222221 122222345677888
Q ss_pred eEEEEecCCCCcccCCcccHHHHhhcCCC-CCCCceEEEeeec---CCCCCccc--hhhcccCCCCCCCCCCcceeeecc
Q 039852 544 LRLEFDKKKEGEETRKNEDDQLLLEALRP-PLDLKKLEIRYYR---GNTVFRSL--LVQKLRAAASFGKMPSLEKLHIWG 617 (731)
Q Consensus 544 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~---~~~~lp~~--~~~~L~~l~~l~~l~~L~~L~L~~ 617 (731)
|+++.+.. ....+..+.. +++|++|+++++. ..+..|.. +.. .+..+++|++|+|+.
T Consensus 383 L~l~~~~l-----------~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 383 MAVYVSDI-----------TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS------LLIGCKKLRRFAFYL 445 (592)
T ss_dssp EEEEESCC-----------CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------HHHHCTTCCEEEEEC
T ss_pred EEeecCCc-----------cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH------HHHhCCCCCEEEEec
Confidence 88765554 2233333322 5678888887432 11112210 110 023477888888876
Q ss_pred ccC-ceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcC--CCCCCCCCC
Q 039852 618 MKR-VKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKA--LPDYIHQTT 694 (731)
Q Consensus 618 ~~~-l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~--lp~~~~~l~ 694 (731)
|.. ++......+ ...+++|+.|+++++. +....... .+..+++|++|++++|+ ++. ++.....++
T Consensus 446 ~~~~l~~~~~~~~----~~~~~~L~~L~L~~n~-l~~~~~~~------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 446 RQGGLTDLGLSYI----GQYSPNVRWMLLGYVG-ESDEGLME------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLP 513 (592)
T ss_dssp CGGGCCHHHHHHH----HHSCTTCCEEEECSCC-SSHHHHHH------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCS
T ss_pred CCCCccHHHHHHH----HHhCccceEeeccCCC-CCHHHHHH------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcC
Confidence 553 211111111 1347888999888773 33211111 12268999999999998 443 344345689
Q ss_pred CccEEEEccCc
Q 039852 695 TLKELRILMCG 705 (731)
Q Consensus 695 ~L~~L~l~~c~ 705 (731)
+|++|++++|+
T Consensus 514 ~L~~L~ls~n~ 524 (592)
T 3ogk_B 514 SLRYLWVQGYR 524 (592)
T ss_dssp SCCEEEEESCB
T ss_pred ccCeeECcCCc
Confidence 99999999998
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=5.8e-13 Score=135.48 Aligned_cols=136 Identities=19% Similarity=0.127 Sum_probs=91.4
Q ss_pred cchhhhhccccccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGR 478 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 478 (731)
.+|..+. .++++|+|++|.+..++ ..+.++.+|++|++++ +.+..+|.. +.+++|++|++++| .+..+|..+..
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~ 98 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQT 98 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTT
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCEEECCCC-cCCcCchhhcc
Confidence 4565553 68999999999998774 5789999999999999 457777765 78999999999998 67788888888
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKK 551 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 551 (731)
+++|+.|++..+.... .....+..+++|+.|.+++.. +.......+..+++|+.|+|+.|..
T Consensus 99 l~~L~~L~l~~N~l~~-------l~~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTS-------LPLGALRGLGELQELYLKGNE----LKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp CTTCCEEECCSSCCCC-------CCSSTTTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCcCcc-------cCHHHHcCCCCCCEEECCCCC----CCccChhhcccccCCCEEECCCCcC
Confidence 8888888775443321 112335555666666655421 1111222334455555555555544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=4.8e-13 Score=137.81 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=22.3
Q ss_pred CCceeEEeccCCcCcccCcccc--cCCCCcceeeccCC
Q 039852 431 LYILEKLDISYCMDLEELPEGI--KKLINMRHLLNDGT 466 (731)
Q Consensus 431 L~~L~~L~l~~c~~l~~lp~~i--~~L~~L~~L~l~~~ 466 (731)
+.+|++|++++|......|..+ ..+++|++|++++|
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 127 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV 127 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc
Confidence 3456667776655444555555 66666666666666
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=5.7e-15 Score=161.58 Aligned_cols=281 Identities=18% Similarity=0.116 Sum_probs=136.1
Q ss_pred cchhhhhccccccEEeecCCccccc-cccc-cCCC----ceeEEeccCCcCc----ccCcccccCCCCcceeeccCCccc
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQL-SETL-CELY----ILEKLDISYCMDL----EELPEGIKKLINMRHLLNDGTDTL 469 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i-~~L~----~L~~L~l~~c~~l----~~lp~~i~~L~~L~~L~l~~~~~~ 469 (731)
.++..+..+++|++|+|++|.+... +..+ ..+. +|++|++++|..- ..+|..+..+++|++|++++|...
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 3455566666777777776665531 2222 2233 5677777665422 134566666677777777666321
Q ss_pred ccccccc-----CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhcccc-----ccc
Q 039852 470 RYMVVGI-----GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELD-----KKK 539 (731)
Q Consensus 470 ~~~p~~i-----~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~-----~~~ 539 (731)
...+..+ ...++|+.|++..+.... .........+..+++|+.|++++.. ........+. ..+
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~ 199 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSA---ASCEPLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPC 199 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBG---GGHHHHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCCCH---HHHHHHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCC
Confidence 1111111 123455655553322110 0000112234445666666665422 1111111111 234
Q ss_pred cCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 540 YLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 540 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
+|+.|++++|.... .....+...+..+++|++|++++|.....-...+... ....+++|++|++++|.
T Consensus 200 ~L~~L~L~~n~l~~-------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 200 QLEALKLESCGVTS-------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG-----LLHPSSRLRTLWIWECG 267 (461)
T ss_dssp CCCEEECTTSCCBT-------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH-----HTSTTCCCCEEECTTSC
T ss_pred CceEEEccCCCCcH-------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH-----HhcCCCCceEEECcCCC
Confidence 67777776665410 0111233444455677777777665432000000000 02346788888888763
Q ss_pred CceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcC-----CCCCCCCCC
Q 039852 620 RVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKA-----LPDYIHQTT 694 (731)
Q Consensus 620 ~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~-----lp~~~~~l~ 694 (731)
++..+...+... ...+++|++|+++++ .+.......... ......++|++|++++|. ++. +|..+..++
T Consensus 268 -l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 268 -ITAKGCGDLCRV-LRAKESLKELSLAGN-ELGDEGARLLCE--TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNR 341 (461)
T ss_dssp -CCHHHHHHHHHH-HHHCTTCCEEECTTC-CCHHHHHHHHHH--HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCS
T ss_pred -CCHHHHHHHHHH-HhhCCCcceEECCCC-CCchHHHHHHHH--HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCC
Confidence 443211100000 134678888888876 333211110000 000134799999999985 433 344456679
Q ss_pred CccEEEEccCc
Q 039852 695 TLKELRILMCG 705 (731)
Q Consensus 695 ~L~~L~l~~c~ 705 (731)
+|++|++++|.
T Consensus 342 ~L~~L~Ls~n~ 352 (461)
T 1z7x_W 342 FLLELQISNNR 352 (461)
T ss_dssp SCCEEECCSSB
T ss_pred CccEEEccCCc
Confidence 99999999985
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=7e-13 Score=134.97 Aligned_cols=170 Identities=18% Similarity=0.215 Sum_probs=120.9
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
+..+.+|++|++++|.+..+| .+..+.+|++|++++| .+..+|. +.++++|++|++++| .+..+|. ++.+++|+.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence 567889999999999999886 4889999999999995 5777776 899999999999998 5666554 788888888
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+... .+..+..+++|+.|.+++..- ... ..+..+++|+.|++++|....
T Consensus 117 L~L~~n~i~---------~~~~l~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~L~~N~l~~----------- 170 (291)
T 1h6t_A 117 LSLEHNGIS---------DINGLVHLPQLESLYLGNNKI-TDI-----TVLSRLTKLDTLSLEDNQISD----------- 170 (291)
T ss_dssp EECTTSCCC---------CCGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCC-----------
T ss_pred EECCCCcCC---------CChhhcCCCCCCEEEccCCcC-Ccc-----hhhccCCCCCEEEccCCcccc-----------
Confidence 877544322 234566777777777765321 111 345667778888887776511
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
. ..+..+++|++|++++|.+.. +| .+..+++|++|++++++
T Consensus 171 -~-~~l~~l~~L~~L~L~~N~i~~-l~-----------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 -I-VPLAGLTKLQNLYLSKNHISD-LR-----------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -C-GGGTTCTTCCEEECCSSCCCB-CG-----------GGTTCTTCSEEEEEEEE
T ss_pred -c-hhhcCCCccCEEECCCCcCCC-Ch-----------hhccCCCCCEEECcCCc
Confidence 0 115566778888887777654 43 24567778888887654
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=6.9e-13 Score=148.28 Aligned_cols=170 Identities=18% Similarity=0.219 Sum_probs=127.3
Q ss_pred hhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCc
Q 039852 405 IEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRT 484 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 484 (731)
+..|.+|++|+|++|.+..+| .+..|.+|+.|+|++| .+..+|. +..|++|++|++++| .+..+| .++.+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence 567889999999999999887 6889999999999995 4767776 889999999999998 566655 6788888888
Q ss_pred cCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHH
Q 039852 485 LGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQ 564 (731)
Q Consensus 485 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 564 (731)
|++..+... .+..+..|++|+.|.+++..- .. . ..+..+++|+.|+|+.|....
T Consensus 114 L~Ls~N~l~---------~l~~l~~l~~L~~L~Ls~N~l-~~---l--~~l~~l~~L~~L~Ls~N~l~~----------- 167 (605)
T 1m9s_A 114 LSLEHNGIS---------DINGLVHLPQLESLYLGNNKI-TD---I--TVLSRLTKLDTLSLEDNQISD----------- 167 (605)
T ss_dssp EECTTSCCC---------CCGGGGGCTTCSEEECCSSCC-CC---C--GGGGSCTTCSEEECCSSCCCC-----------
T ss_pred EEecCCCCC---------CCccccCCCccCEEECCCCcc-CC---c--hhhcccCCCCEEECcCCcCCC-----------
Confidence 877544332 245677788888888876322 11 1 356778889999998887611
Q ss_pred HHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 565 LLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 565 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
... +..+++|+.|+|++|.+.. +| .++.+++|+.|+|++|+
T Consensus 168 -~~~-l~~l~~L~~L~Ls~N~i~~-l~-----------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 168 -IVP-LAGLTKLQNLYLSKNHISD-LR-----------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CGG-GTTCTTCCEEECCSSCCCB-CG-----------GGTTCTTCSEEECCSEE
T ss_pred -chh-hccCCCCCEEECcCCCCCC-Ch-----------HHccCCCCCEEEccCCc
Confidence 111 5677889999999887765 43 35778889999998865
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.37 E-value=2.7e-13 Score=134.00 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=124.2
Q ss_pred cch-hhhhccccccEEeecCCc-cccccc-cccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccccc
Q 039852 400 KIP-RNIEKLVHLRYLNLSGQD-IVQLSE-TLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 400 ~lp-~~i~~L~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~ 475 (731)
.+| ..|.++++|++|+|++|. ++.+|. .+.++++|++|++++|+.+..+|. .+..+++|++|++++| .+..+|.
T Consensus 45 ~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~- 122 (239)
T 2xwt_C 45 TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD- 122 (239)
T ss_dssp EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-
T ss_pred EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-
Confidence 344 478899999999999997 998886 689999999999998677888875 5889999999999998 5666776
Q ss_pred cCCCCCCC---ccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCC-ceEEEEecC
Q 039852 476 IGRLTGLR---TLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS-YLRLEFDKK 551 (731)
Q Consensus 476 i~~L~~L~---~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~ 551 (731)
++.+++|+ .|++..+. . + .......+.++++|+ .|+++.|..
T Consensus 123 ~~~l~~L~~L~~L~l~~N~--~---------l-----------------------~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNP--Y---------M-----------------------TSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp CTTCCBCCSEEEEEEESCT--T---------C-----------------------CEECTTTTTTTBSSEEEEECCSCCC
T ss_pred cccccccccccEEECCCCc--c---------h-----------------------hhcCcccccchhcceeEEEcCCCCC
Confidence 66666666 44332220 0 0 001111234455666 666666654
Q ss_pred CCCcccCCcccHHHHhhcCCCCCCCceEEEeeec-CCCCCccchhhcccCCCCCCCC-CCcceeeeccccCceEeCcccc
Q 039852 552 KEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYR-GNTVFRSLLVQKLRAAASFGKM-PSLEKLHIWGMKRVKKVGDEFL 629 (731)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~lp~~~~~~L~~l~~l~~l-~~L~~L~L~~~~~l~~i~~~~~ 629 (731)
. .+.......++|++|++++|. ... +|.. .++.+ ++|++|+++++. ++.++..
T Consensus 169 ~------------~i~~~~~~~~~L~~L~L~~n~~l~~-i~~~---------~~~~l~~~L~~L~l~~N~-l~~l~~~-- 223 (239)
T 2xwt_C 169 T------------SVQGYAFNGTKLDAVYLNKNKYLTV-IDKD---------AFGGVYSGPSLLDVSQTS-VTALPSK-- 223 (239)
T ss_dssp C------------EECTTTTTTCEEEEEECTTCTTCCE-ECTT---------TTTTCSBCCSEEECTTCC-CCCCCCT--
T ss_pred c------------ccCHhhcCCCCCCEEEcCCCCCccc-CCHH---------HhhccccCCcEEECCCCc-cccCChh--
Confidence 1 111111122678888888884 554 5431 35667 889999998744 6666653
Q ss_pred cccccccCcccceeecccccc
Q 039852 630 GVEIIIAFPKLKSLLIEDLLE 650 (731)
Q Consensus 630 ~~~~~~~f~~L~~L~l~~~~~ 650 (731)
.|++|+.|.+.++..
T Consensus 224 ------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 ------GLEHLKELIARNTWT 238 (239)
T ss_dssp ------TCTTCSEEECTTC--
T ss_pred ------HhccCceeeccCccC
Confidence 578899988887643
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=137.70 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=125.6
Q ss_pred ccccccEEeecCCccc-cccccc--cCCCceeEEeccCCcCcccCc----ccccCCCCcceeeccCCccccccc-cccCC
Q 039852 407 KLVHLRYLNLSGQDIV-QLSETL--CELYILEKLDISYCMDLEELP----EGIKKLINMRHLLNDGTDTLRYMV-VGIGR 478 (731)
Q Consensus 407 ~L~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~l~~c~~l~~lp----~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~ 478 (731)
.+.+|++|+|++|.+. ..|..+ .++.+|++|++++|......| ..+..+++|++|++++|. +..+| ..++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhcc
Confidence 3567999999999987 566777 899999999999966444333 345679999999999984 44444 45667
Q ss_pred CCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccC
Q 039852 479 LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETR 558 (731)
Q Consensus 479 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~ 558 (731)
+++|+.|++..+.... ...+ .....+..+++|+.|++++|...
T Consensus 168 l~~L~~L~Ls~N~l~~------~~~~-------------------------~~~~~~~~l~~L~~L~Ls~N~l~------ 210 (310)
T 4glp_A 168 FPALTSLDLSDNPGLG------ERGL-------------------------MAALCPHKFPAIQNLALRNTGME------ 210 (310)
T ss_dssp CTTCCEEECCSCTTCH------HHHH-------------------------HTTSCTTSSCCCCSCBCCSSCCC------
T ss_pred CCCCCEEECCCCCCcc------chhh-------------------------hHHHhhhcCCCCCEEECCCCCCC------
Confidence 7777777664332110 0000 00011234455555555555440
Q ss_pred CcccHHHHhhc-CCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 559 KNEDDQLLLEA-LRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 559 ~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
........ +..+++|++|++++|.+....|..+ ..+..+++|++|+|++|. ++.+|.. .+
T Consensus 211 ---~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-------~~~~~~~~L~~L~Ls~N~-l~~lp~~--------~~ 271 (310)
T 4glp_A 211 ---TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-------PRCMWSSALNSLNLSFAG-LEQVPKG--------LP 271 (310)
T ss_dssp ---CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-------SSCCCCTTCCCEECCSSC-CCSCCSC--------CC
T ss_pred ---chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-------HhccCcCcCCEEECCCCC-CCchhhh--------hc
Confidence 01111111 2344677777777777766224321 122234688888887754 5555543 23
Q ss_pred cccceeeccccccccccccccccccccccccCcccceeeecccc
Q 039852 638 PKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCP 681 (731)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~ 681 (731)
++|+.|+++++ .+..++.. . .+|+|++|++++++
T Consensus 272 ~~L~~L~Ls~N-~l~~~~~~-~--------~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 AKLRVLDLSSN-RLNRAPQP-D--------ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSCEECCSC-CCCSCCCT-T--------SCCCCSCEECSSTT
T ss_pred CCCCEEECCCC-cCCCCchh-h--------hCCCccEEECcCCC
Confidence 78888888877 56655431 1 67888888888754
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=7.6e-14 Score=147.21 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=60.0
Q ss_pred cchhhhhccccccEEeecCCcccccc-----ccccCCC-ceeEEeccCCcCcccCcccccCC-----CCcceeeccCCcc
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLS-----ETLCELY-ILEKLDISYCMDLEELPEGIKKL-----INMRHLLNDGTDT 468 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~l~~c~~l~~lp~~i~~L-----~~L~~L~l~~~~~ 468 (731)
.+|..+....+|++|+|++|.+...+ ..+.++. +|++|++++|..-...+..+..+ ++|++|++++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 35555566667999999999988776 5677888 89999999965334445556654 899999999984
Q ss_pred cccc-ccc----cCCC-CCCCccCce
Q 039852 469 LRYM-VVG----IGRL-TGLRTLGEF 488 (731)
Q Consensus 469 ~~~~-p~~----i~~L-~~L~~L~~~ 488 (731)
+... +.. +..+ ++|+.|++.
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECc
Confidence 4332 222 2233 566666553
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=3.8e-12 Score=126.62 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=52.7
Q ss_pred ccccEEeecCCccccccccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccc-cCCCCCCCccC
Q 039852 409 VHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLG 486 (731)
Q Consensus 409 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 486 (731)
...++++++++.++.+|..+. .+|+.|++++|. +..+ |..+.++++|++|++++| .+..++.. +..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEE
Confidence 456778888888888887765 578888888854 4444 445788888888888887 44444443 56666666665
Q ss_pred ce
Q 039852 487 EF 488 (731)
Q Consensus 487 ~~ 488 (731)
+.
T Consensus 90 L~ 91 (251)
T 3m19_A 90 LA 91 (251)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=2.5e-12 Score=122.82 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=67.4
Q ss_pred hhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLR 483 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 483 (731)
..+.+.+|++|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|+
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred ChhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3478899999999999999999 7999999999999997 566555 788999999999999843333566677777777
Q ss_pred ccCceE
Q 039852 484 TLGEFH 489 (731)
Q Consensus 484 ~L~~~~ 489 (731)
.|++..
T Consensus 116 ~L~Ls~ 121 (197)
T 4ezg_A 116 LLDISH 121 (197)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 776543
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.26 E-value=2.4e-13 Score=153.88 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=29.6
Q ss_pred cCcccceeeecccccCcC--CCCCCCCCCCccEEEEccCch
Q 039852 668 IMPRLSSFEIKWCPKLKA--LPDYIHQTTTLKELRILMCGL 706 (731)
Q Consensus 668 ~~p~L~~L~i~~c~~L~~--lp~~~~~l~~L~~L~l~~c~~ 706 (731)
.+|+|++|++++|+. +. ++..+..+++|++|++++|+.
T Consensus 479 ~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 689999999999975 32 122345689999999999985
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.26 E-value=6.6e-12 Score=124.91 Aligned_cols=88 Identities=24% Similarity=0.276 Sum_probs=67.7
Q ss_pred ccchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccccc-
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVVG- 475 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~- 475 (731)
..+|..+. .+|++|+|++|.+..++. .+.++.+|++|++++|. +..++. .+..+++|++|++++| .+..+|..
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 102 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANN-QLASLPLGV 102 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCC-cccccChhH
Confidence 34665554 589999999999997765 68999999999999954 555554 5889999999999998 55666654
Q ss_pred cCCCCCCCccCceEe
Q 039852 476 IGRLTGLRTLGEFHV 490 (731)
Q Consensus 476 i~~L~~L~~L~~~~~ 490 (731)
+..+++|+.|++..+
T Consensus 103 ~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 103 FDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcccCCCCEEEcCCC
Confidence 577778877776443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=1.2e-11 Score=136.57 Aligned_cols=182 Identities=14% Similarity=0.088 Sum_probs=111.1
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCceE
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFH 489 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 489 (731)
+|++|+|++|.++.+|..+. .+|++|++++| .+..+| ..+++|++|++++| .+..+|. +++ +|+.|++..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 89999999999999998774 78999999994 577888 45789999999998 6666877 665 777776654
Q ss_pred eCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhhc
Q 039852 490 VSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEA 569 (731)
Q Consensus 490 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 569 (731)
+.... +.. .+++|+.|++++..- .. .+. .+++|+.|+|++|... .++.
T Consensus 130 N~l~~---------lp~--~l~~L~~L~Ls~N~l----~~-lp~---~l~~L~~L~Ls~N~L~------------~lp~- 177 (571)
T 3cvr_A 130 NQLTM---------LPE--LPALLEYINADNNQL----TM-LPE---LPTSLEVLSVRNNQLT------------FLPE- 177 (571)
T ss_dssp SCCSC---------CCC--CCTTCCEEECCSSCC----SC-CCC---CCTTCCEEECCSSCCS------------CCCC-
T ss_pred CcCCC---------CCC--cCccccEEeCCCCcc----Cc-CCC---cCCCcCEEECCCCCCC------------Ccch-
Confidence 43221 122 455666666654211 11 111 3456777777776551 0111
Q ss_pred CCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccc
Q 039852 570 LRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLL 649 (731)
Q Consensus 570 l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~ 649 (731)
+. ++|+.|++++|.+.. +|. +... -....+.|++|+|++|. ++.+|..++ .+++|+.|++++++
T Consensus 178 l~--~~L~~L~Ls~N~L~~-lp~-~~~~-----L~~~~~~L~~L~Ls~N~-l~~lp~~l~------~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLES-LPA-VPVR-----NHHSEETEIFFRCRENR-ITHIPENIL------SLDPTCTIILEDNP 241 (571)
T ss_dssp CC--TTCCEEECCSSCCSS-CCC-CC-------------CCEEEECCSSC-CCCCCGGGG------GSCTTEEEECCSSS
T ss_pred hh--CCCCEEECcCCCCCc-hhh-HHHh-----hhcccccceEEecCCCc-ceecCHHHh------cCCCCCEEEeeCCc
Confidence 22 667777777776654 554 1100 00112333777776643 556665442 36677777777663
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=5.4e-13 Score=150.88 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=21.2
Q ss_pred ccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeee
Q 039852 537 KKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYY 584 (731)
Q Consensus 537 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 584 (731)
.+++|+.|++++|.. ........+..+++|++|++.+|
T Consensus 287 ~~~~L~~L~L~~~~l----------~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATV----------QSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCC----------CHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCC----------CHHHHHHHHhcCCCcCEEeCcCc
Confidence 456677777766654 11222222345567777777765
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.23 E-value=2.3e-11 Score=123.76 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=122.6
Q ss_pred hhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLR 483 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 483 (731)
.+..+++|++|+|++|.++.++. +.++++|++|++++| .+..+|. +..+++|++|++++| .+..+ ..+..+++|+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~L~ 137 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDI-NGLVHLPQLE 137 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCC-GGGGGCTTCC
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCC-hhhcCCCCCC
Confidence 48889999999999999999987 999999999999995 5777665 999999999999999 56665 4688889999
Q ss_pred ccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccH
Q 039852 484 TLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDD 563 (731)
Q Consensus 484 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 563 (731)
.|++..+... .+..+..+++|+.|++++..- . .... +..+++|+.|+++.|...
T Consensus 138 ~L~l~~n~l~---------~~~~l~~l~~L~~L~L~~N~l-~---~~~~--l~~l~~L~~L~L~~N~i~----------- 191 (291)
T 1h6t_A 138 SLYLGNNKIT---------DITVLSRLTKLDTLSLEDNQI-S---DIVP--LAGLTKLQNLYLSKNHIS----------- 191 (291)
T ss_dssp EEECCSSCCC---------CCGGGGGCTTCSEEECCSSCC-C---CCGG--GTTCTTCCEEECCSSCCC-----------
T ss_pred EEEccCCcCC---------cchhhccCCCCCEEEccCCcc-c---cchh--hcCCCccCEEECCCCcCC-----------
Confidence 9887655433 236778888999998886422 2 2111 778899999999999761
Q ss_pred HHHhhcCCCCCCCceEEEeeecCCCCCcc
Q 039852 564 QLLLEALRPPLDLKKLEIRYYRGNTVFRS 592 (731)
Q Consensus 564 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~ 592 (731)
.+..+..+++|+.|++++|.... .|.
T Consensus 192 --~l~~l~~l~~L~~L~l~~n~i~~-~~~ 217 (291)
T 1h6t_A 192 --DLRALAGLKNLDVLELFSQECLN-KPI 217 (291)
T ss_dssp --BCGGGTTCTTCSEEEEEEEEEEC-CCE
T ss_pred --CChhhccCCCCCEEECcCCcccC-Ccc
Confidence 12346778999999999998766 443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=2.7e-11 Score=121.13 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=74.0
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
.++ .+..+.+|++|++++|.++.+| .+..+.+|++|++++| .+..+|. +..+++|++|++++| .+..+|....
T Consensus 33 ~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~-- 105 (263)
T 1xeu_A 33 DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS-- 105 (263)
T ss_dssp SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--
T ss_pred ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--
Confidence 344 5788899999999999999888 7888999999999984 5777777 889999999999988 5555554322
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccC
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRR 520 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 520 (731)
++|+.|++..+... .+..+..+++|+.|++++
T Consensus 106 ~~L~~L~L~~N~l~---------~~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 106 ACLSRLFLDNNELR---------DTDSLIHLKNLEILSIRN 137 (263)
T ss_dssp SSCCEEECCSSCCS---------BSGGGTTCTTCCEEECTT
T ss_pred CcccEEEccCCccC---------CChhhcCcccccEEECCC
Confidence 66666655433222 123455555555555544
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=2.3e-11 Score=135.97 Aligned_cols=158 Identities=19% Similarity=0.152 Sum_probs=124.9
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
.+| .++.|++|++|+|++|.+..+|. ++.|.+|+.|+|++| .+..+| .+..|++|++|++++| .+..+ ..+..|
T Consensus 57 ~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l 130 (605)
T 1m9s_A 57 SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN-GISDI-NGLVHL 130 (605)
T ss_dssp CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTS-CCCCC-GGGGGC
T ss_pred CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCC-CCCCC-ccccCC
Confidence 344 58899999999999999999886 999999999999995 577776 6999999999999999 55555 458889
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCC
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRK 559 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 559 (731)
++|+.|.+..+... .+..+..|++|+.|.+++..- ....+ +..+++|+.|+|+.|...
T Consensus 131 ~~L~~L~Ls~N~l~---------~l~~l~~l~~L~~L~Ls~N~l----~~~~~--l~~l~~L~~L~Ls~N~i~------- 188 (605)
T 1m9s_A 131 PQLESLYLGNNKIT---------DITVLSRLTKLDTLSLEDNQI----SDIVP--LAGLTKLQNLYLSKNHIS------- 188 (605)
T ss_dssp TTCSEEECCSSCCC---------CCGGGGSCTTCSEEECCSSCC----CCCGG--GTTCTTCCEEECCSSCCC-------
T ss_pred CccCEEECCCCccC---------CchhhcccCCCCEEECcCCcC----CCchh--hccCCCCCEEECcCCCCC-------
Confidence 99999988655433 236788889999999887432 22222 778999999999999761
Q ss_pred cccHHHHhhcCCCCCCCceEEEeeecCCCCCcc
Q 039852 560 NEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRS 592 (731)
Q Consensus 560 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~ 592 (731)
.+..+..+++|+.|+|++|.+.. .|.
T Consensus 189 ------~l~~l~~l~~L~~L~L~~N~l~~-~p~ 214 (605)
T 1m9s_A 189 ------DLRALAGLKNLDVLELFSQECLN-KPI 214 (605)
T ss_dssp ------BCGGGTTCTTCSEEECCSEEEEC-CCC
T ss_pred ------CChHHccCCCCCEEEccCCcCcC-Ccc
Confidence 12456778999999999998876 443
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.17 E-value=5.1e-11 Score=135.75 Aligned_cols=251 Identities=11% Similarity=0.019 Sum_probs=166.1
Q ss_pred hhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccc--cccccccCCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTL--RYMVVGIGRLTG 481 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~--~~~p~~i~~L~~ 481 (731)
.+.....|+.|+++++.+..++. ..+..|+.+++..+. ....+ ....+++|+.|+++.|... ...|.....+.+
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~l~~n~-~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 398 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK-GGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS 398 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEEEESCC-SCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC
T ss_pred ccccchhhhhhhcccccccCcCc--ccchhhhhccccccc-CCCCc-ccccccccccchhhccccccccccccchhhhhh
Confidence 35566789999999998887764 346778888887743 33333 3457889999999887321 223444566777
Q ss_pred CCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcc
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNE 561 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 561 (731)
|+.|....... ......+..+.+|+.+.+...... .......+..+.+++.++++.|..
T Consensus 399 L~~L~~~~~~~--------~~~~~~~~~l~~L~~l~l~~~~~~---~~~~~~~~~~l~~l~~l~ls~n~l---------- 457 (635)
T 4g8a_A 399 LKYLDLSFNGV--------ITMSSNFLGLEQLEHLDFQHSNLK---QMSEFSVFLSLRNLIYLDISHTHT---------- 457 (635)
T ss_dssp CCEEECCSCSE--------EEECSCCTTCTTCCEEECTTSEEE---STTSSCTTTTCTTCCEEECTTSCC----------
T ss_pred hhhhhcccccc--------ccccccccccccccchhhhhcccc---cccccccccccccccccccccccc----------
Confidence 77775533221 112334556666766665432111 111223456778888888887765
Q ss_pred cHHHHhhcCCCCCCCceEEEeeecCCCC-CccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCccc
Q 039852 562 DDQLLLEALRPPLDLKKLEIRYYRGNTV-FRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKL 640 (731)
Q Consensus 562 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L 640 (731)
.......+..+++|+.|++++|..... .|. .++.+++|++|+|++|. ++.+++..+ ..+++|
T Consensus 458 -~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~----------~~~~l~~L~~L~Ls~N~-L~~l~~~~f-----~~l~~L 520 (635)
T 4g8a_A 458 -RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----------IFTELRNLTFLDLSQCQ-LEQLSPTAF-----NSLSSL 520 (635)
T ss_dssp -EECCTTTTTTCTTCCEEECTTCEEGGGEECS----------CCTTCTTCCEEECTTSC-CCEECTTTT-----TTCTTC
T ss_pred -ccccccccccchhhhhhhhhhcccccccCch----------hhhhccccCEEECCCCc-cCCcChHHH-----cCCCCC
Confidence 111223455678999999998864331 222 46779999999999875 777766543 578999
Q ss_pred ceeeccccccccccccccccccccccccCcccceeeecccccCcCC-CCCCCCC-CCccEEEEccCc
Q 039852 641 KSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL-PDYIHQT-TTLKELRILMCG 705 (731)
Q Consensus 641 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l-p~~~~~l-~~L~~L~l~~c~ 705 (731)
++|+++++ ++..++... +..+++|++|+++++ ++..+ |..+..+ ++|+.|+++++|
T Consensus 521 ~~L~Ls~N-~l~~l~~~~-------~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 521 QVLNMSHN-NFFSLDTFP-------YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTS-CCCBCCCGG-------GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCCCChhH-------HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999998 566665432 237899999999996 55555 5667776 689999999755
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=2.1e-11 Score=117.48 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=62.7
Q ss_pred cchhhhhccccccEEeecCCcccccccc-ccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-c
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSET-LCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-I 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i 476 (731)
.+|..+ ..+|++|+|++|.++.+|.. +.++.+|++|++++| .+..+|.. +..+++|++|++++| .+..+|.. +
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 96 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVF 96 (208)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHh
Confidence 344433 35788889988888877764 678888999998884 56666655 578888899988888 55566654 5
Q ss_pred CCCCCCCccCceEe
Q 039852 477 GRLTGLRTLGEFHV 490 (731)
Q Consensus 477 ~~L~~L~~L~~~~~ 490 (731)
+.+++|+.|++..+
T Consensus 97 ~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 97 DKLTQLKELALNTN 110 (208)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCccCCCEEEcCCC
Confidence 67777777766433
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=1.5e-11 Score=123.09 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=115.8
Q ss_pred ccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccC
Q 039852 407 KLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLG 486 (731)
Q Consensus 407 ~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 486 (731)
.+.++..++++++.++.++ .+..+.+|++|++++| .+..+| .+..+++|++|++++| .+..+|. ++.+++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEE
Confidence 5777888899999999988 7899999999999995 688888 7999999999999999 6777776 88888888887
Q ss_pred ceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHH
Q 039852 487 EFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLL 566 (731)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 566 (731)
+..+.... +..+.. .+|+.|.+++..- . .. ..+..+++|+.|++++|....
T Consensus 92 L~~N~l~~---------l~~~~~-~~L~~L~L~~N~l-~---~~--~~l~~l~~L~~L~Ls~N~i~~------------- 142 (263)
T 1xeu_A 92 VNRNRLKN---------LNGIPS-ACLSRLFLDNNEL-R---DT--DSLIHLKNLEILSIRNNKLKS------------- 142 (263)
T ss_dssp CCSSCCSC---------CTTCCC-SSCCEEECCSSCC-S---BS--GGGTTCTTCCEEECTTSCCCB-------------
T ss_pred CCCCccCC---------cCcccc-CcccEEEccCCcc-C---CC--hhhcCcccccEEECCCCcCCC-------------
Confidence 75543321 222333 5666666665211 1 11 235666777777777765510
Q ss_pred hhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 567 LEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 567 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
...+..+++|+.|++++|.+.. + +.+..+++|++|+++++.
T Consensus 143 ~~~l~~l~~L~~L~L~~N~i~~-~-----------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 143 IVMLGFLSKLEVLDLHGNEITN-T-----------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CGGGGGCTTCCEEECTTSCCCB-C-----------TTSTTCCCCCEEEEEEEE
T ss_pred ChHHccCCCCCEEECCCCcCcc-h-----------HHhccCCCCCEEeCCCCc
Confidence 1234455677777777776654 2 245667777777777644
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=2e-10 Score=109.51 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=83.5
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|......|..+..+++|++|++++|......|..++.+
T Consensus 58 ~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 58 DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 466 6889999999999999887765 78999999999999966444578889999999999999995444467778888
Q ss_pred CCCCccCceEeC-CCCCcCCCcccccccccCCCCCCcccccC
Q 039852 480 TGLRTLGEFHVS-GGGGVDGRKACRLESLKNLEHLQVCGIRR 520 (731)
Q Consensus 480 ~~L~~L~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 520 (731)
++|+.|++..+. .. .+..+..+++|+.|.+++
T Consensus 136 ~~L~~L~L~~n~~i~---------~~~~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 136 PKVNSIDLSYNGAIT---------DIMPLKTLPELKSLNIQF 168 (197)
T ss_dssp SSCCEEECCSCTBCC---------CCGGGGGCSSCCEEECTT
T ss_pred CCCCEEEccCCCCcc---------ccHhhcCCCCCCEEECCC
Confidence 888888775443 21 123455555666655554
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=8.2e-13 Score=146.78 Aligned_cols=206 Identities=15% Similarity=0.112 Sum_probs=128.4
Q ss_pred hccccccEEeecCCccccccccccCCCceeEEeccCCc-------------CcccCcccccCCCCcceee-ccCCccccc
Q 039852 406 EKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCM-------------DLEELPEGIKKLINMRHLL-NDGTDTLRY 471 (731)
Q Consensus 406 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~-------------~l~~lp~~i~~L~~L~~L~-l~~~~~~~~ 471 (731)
..+++|+.|+|++|.++.+|.+|++|.+|+.|++++|. .....|..++.|++|+.|+ ++.+ .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 56788999999999999999999999999999987654 2333445556666666665 3332 1111
Q ss_pred cccccCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecC
Q 039852 472 MVVGIGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKK 551 (731)
Q Consensus 472 ~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 551 (731)
++ .+.+. ...+..++. ..|+.|.+++.. +.. .+ .+..+++|+.|+|++|..
T Consensus 425 L~----------~l~l~------------~n~i~~l~~-~~L~~L~Ls~n~----l~~-lp-~~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 425 LR----------SKFLL------------ENSVLKMEY-ADVRVLHLAHKD----LTV-LC-HLEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp HH----------HHHHH------------HHHHHHHHH-TTCSEEECTTSC----CSS-CC-CGGGGTTCCEEECCSSCC
T ss_pred hh----------hhhhh------------cccccccCc-cCceEEEecCCC----CCC-Cc-CccccccCcEeecCcccc
Confidence 11 11110 001111111 125555555421 111 12 266778888888888876
Q ss_pred CCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEe--Ccccc
Q 039852 552 KEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKV--GDEFL 629 (731)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i--~~~~~ 629 (731)
..++..+..+++|+.|++++|.+.+ +| .++.+++|++|+|++|. ++.+ |..+
T Consensus 476 ------------~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-----------~l~~l~~L~~L~Ls~N~-l~~~~~p~~l- 529 (567)
T 1dce_A 476 ------------RALPPALAALRCLEVLQASDNALEN-VD-----------GVANLPRLQELLLCNNR-LQQSAAIQPL- 529 (567)
T ss_dssp ------------CCCCGGGGGCTTCCEEECCSSCCCC-CG-----------GGTTCSSCCEEECCSSC-CCSSSTTGGG-
T ss_pred ------------cccchhhhcCCCCCEEECCCCCCCC-Cc-----------ccCCCCCCcEEECCCCC-CCCCCCcHHH-
Confidence 1334566677889999999988876 65 25678899999998854 6555 3433
Q ss_pred cccccccCcccceeeccccccccccccccccccccccccCcccceeee
Q 039852 630 GVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEI 677 (731)
Q Consensus 630 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (731)
..+++|+.|+++++ .+...+..... .+..+|+|+.|++
T Consensus 530 -----~~l~~L~~L~L~~N-~l~~~~~~~~~----l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 -----VSCPRLVLLNLQGN-SLCQEEGIQER----LAEMLPSVSSILT 567 (567)
T ss_dssp -----GGCTTCCEEECTTS-GGGGSSSCTTH----HHHHCTTCSEEEC
T ss_pred -----hcCCCCCEEEecCC-cCCCCccHHHH----HHHHCcccCccCC
Confidence 57889999999887 45555432211 0114888888853
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=2.3e-10 Score=111.03 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=54.1
Q ss_pred cchhhhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccc-c
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVG-I 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i 476 (731)
.+|..+. .+|++|+|++|.++.+|. .+..+.+|++|+|++|. +..+ |..|..+++|++|++++| .+..+|.+ +
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f 100 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITELPKSLF 100 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHc
Confidence 3444443 467777777777776655 56777777777777744 4333 566777777777777777 45556655 3
Q ss_pred CCCCCCCccCce
Q 039852 477 GRLTGLRTLGEF 488 (731)
Q Consensus 477 ~~L~~L~~L~~~ 488 (731)
..+++|+.|++.
T Consensus 101 ~~l~~L~~L~L~ 112 (220)
T 2v9t_B 101 EGLFSLQLLLLN 112 (220)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEECC
Confidence 556666666553
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=1.3e-10 Score=128.42 Aligned_cols=170 Identities=16% Similarity=0.090 Sum_probs=121.6
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
.+|..+. .+|++|+|++|.++.+| ..+.+|++|++++| .+..+|. +.. +|++|++++| .+..+|. .+
T Consensus 73 ~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l 139 (571)
T 3cvr_A 73 SLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LP 139 (571)
T ss_dssp CCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CC
T ss_pred ccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC-cCCCCCC---cC
Confidence 4676663 78999999999999999 55799999999995 5777998 765 9999999999 6677887 67
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCC
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRK 559 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 559 (731)
++|+.|++..+.... +.. .+++|+.|.+++..- . . .+. +. ++|+.|+|++|...
T Consensus 140 ~~L~~L~Ls~N~l~~---------lp~--~l~~L~~L~Ls~N~L-~---~-lp~-l~--~~L~~L~Ls~N~L~------- 193 (571)
T 3cvr_A 140 ALLEYINADNNQLTM---------LPE--LPTSLEVLSVRNNQL-T---F-LPE-LP--ESLEALDVSTNLLE------- 193 (571)
T ss_dssp TTCCEEECCSSCCSC---------CCC--CCTTCCEEECCSSCC-S---C-CCC-CC--TTCCEEECCSSCCS-------
T ss_pred ccccEEeCCCCccCc---------CCC--cCCCcCEEECCCCCC-C---C-cch-hh--CCCCEEECcCCCCC-------
Confidence 888888775544321 222 467788888876321 1 1 112 33 89999999999771
Q ss_pred cccHHHHhhcCC-----CCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeC
Q 039852 560 NEDDQLLLEALR-----PPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVG 625 (731)
Q Consensus 560 ~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~ 625 (731)
.++. +. ..+.|+.|++++|.+.. +|.++ ..+++|++|+|++|+-.+.++
T Consensus 194 -----~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l----------~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 194 -----SLPA-VPVRNHHSEETEIFFRCRENRITH-IPENI----------LSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -----SCCC-CC--------CCEEEECCSSCCCC-CCGGG----------GGSCTTEEEECCSSSCCHHHH
T ss_pred -----chhh-HHHhhhcccccceEEecCCCccee-cCHHH----------hcCCCCCEEEeeCCcCCCcCH
Confidence 1111 22 12333999999999987 88754 448999999999976433333
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.04 E-value=1.8e-10 Score=110.87 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=57.7
Q ss_pred ccEEeecCCccccccccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-cCCCCCCCccCce
Q 039852 411 LRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLGEF 488 (731)
Q Consensus 411 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~ 488 (731)
-+.++++++.++.+|..+. .+|++|++++| .+..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++.
T Consensus 9 ~~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGIP--AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccCCCCCCC--CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECC
Confidence 3678888999999997764 58999999995 56677665 689999999999998 56666654 4677777777664
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=3.6e-10 Score=109.66 Aligned_cols=149 Identities=12% Similarity=0.169 Sum_probs=103.1
Q ss_pred ccEEeecCCccccccccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccccc-ccccCCCCCCCccCce
Q 039852 411 LRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYM-VVGIGRLTGLRTLGEF 488 (731)
Q Consensus 411 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~ 488 (731)
-+.++++++.++.+|..+. .+|+.|++++| .+..+|. .+..+++|++|++++| .+..+ |..+..+++|+.|++.
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECC
Confidence 3678999999999998776 68999999994 5766665 6889999999999999 44444 5667777777777664
Q ss_pred EeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhh
Q 039852 489 HVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLE 568 (731)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 568 (731)
.+.... .....+.++++|+.|+|++|... .....
T Consensus 89 ~N~l~~-----------------------------------l~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~ 122 (220)
T 2v9t_B 89 GNKITE-----------------------------------LPKSLFEGLFSLQLLLLNANKIN-----------CLRVD 122 (220)
T ss_dssp SSCCCC-----------------------------------CCTTTTTTCTTCCEEECCSSCCC-----------CCCTT
T ss_pred CCcCCc-----------------------------------cCHhHccCCCCCCEEECCCCCCC-----------EeCHH
Confidence 322110 01112344566777777766551 11234
Q ss_pred cCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 569 ALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 569 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
.+..+++|++|++++|.+.+ +|. ..++.+++|++|+|++++
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~-~~~---------~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQT-IAK---------GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCT---------TTTTTCTTCCEEECCSSC
T ss_pred HcCCCCCCCEEECCCCcCCE-ECH---------HHHhCCCCCCEEEeCCCC
Confidence 55667888888888888776 543 135668888888888765
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=3.6e-10 Score=109.65 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=88.5
Q ss_pred ccEEeecCCccccccccccCCCceeEEeccCCcCcccCcc--cccCCCCcceeeccCCcccccccc-ccCCCCCCCccCc
Q 039852 411 LRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPE--GIKKLINMRHLLNDGTDTLRYMVV-GIGRLTGLRTLGE 487 (731)
Q Consensus 411 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~ 487 (731)
-+.++++++.++.+|..+.. .+++|++++| .+..++. .+..+++|++|++++| .+..++. .+..+++|+.|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIPQ--YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCCCT--TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCccCCCC--CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEEC
Confidence 35788888888888877653 5678888884 4666532 3778888888888888 4555554 4666777766665
Q ss_pred eEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHh
Q 039852 488 FHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLL 567 (731)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 567 (731)
..+.... .... .+.++++|+.|+|++|... ...+
T Consensus 89 s~N~l~~-------~~~~----------------------------~~~~l~~L~~L~Ls~N~l~-----------~~~~ 122 (220)
T 2v70_A 89 TSNRLEN-------VQHK----------------------------MFKGLESLKTLMLRSNRIT-----------CVGN 122 (220)
T ss_dssp CSSCCCC-------CCGG----------------------------GGTTCSSCCEEECTTSCCC-----------CBCT
T ss_pred CCCccCc-------cCHh----------------------------HhcCCcCCCEEECCCCcCC-----------eECH
Confidence 3332211 1111 2333445555555554431 0112
Q ss_pred hcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 568 EALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 568 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
..+..+++|+.|++++|.+.+..|. .++.+++|++|+|++++
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPG----------AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTT----------TTTTCTTCCEEECCSCC
T ss_pred hHcCCCccCCEEECCCCcCCEECHH----------HhcCCCCCCEEEecCcC
Confidence 3445566777777777766651132 34567777777777654
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.99 E-value=1e-10 Score=134.15 Aligned_cols=111 Identities=23% Similarity=0.192 Sum_probs=88.5
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRL 479 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 479 (731)
..|..+..+.+|++|+|++|.+..+|..+++|.+|++|+|++| .+..+|..|++|++|++|+|++| .+..+|..++.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence 3567788999999999999999999999999999999999995 57799999999999999999999 567899999999
Q ss_pred CCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccC
Q 039852 480 TGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRR 520 (731)
Q Consensus 480 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 520 (731)
++|+.|++..+... ..+..+..|++|+.|++++
T Consensus 293 ~~L~~L~L~~N~l~--------~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT--------TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TTCSEEECCSSCCC--------CCCSSTTSCTTCCCEECTT
T ss_pred CCCCEEECCCCCCC--------ccChhhhcCCCccEEeCCC
Confidence 99999988655432 2344577788888888876
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.99 E-value=6e-10 Score=108.86 Aligned_cols=138 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred cchhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-c
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-I 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i 476 (731)
.+|..+. .+|++|+|++|.+..+ |..+.++.+|++|+|++| .+..+|.. +..+++|++|++++| .+..+|.. +
T Consensus 33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~ 108 (229)
T 3e6j_A 33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVF 108 (229)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHh
Confidence 3454443 6777777777777766 455777777777777774 45666654 567777777777777 45555544 4
Q ss_pred CCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcc
Q 039852 477 GRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEE 556 (731)
Q Consensus 477 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 556 (731)
..+++|+.|++..+... ..+..+..+++|+.|+|++|....
T Consensus 109 ~~l~~L~~L~Ls~N~l~------------------------------------~lp~~~~~l~~L~~L~L~~N~l~~--- 149 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLT------------------------------------ELPRGIERLTHLTHLALDQNQLKS--- 149 (229)
T ss_dssp TTCTTCCEEECCSSCCC------------------------------------SCCTTGGGCTTCSEEECCSSCCCC---
T ss_pred CcchhhCeEeccCCccc------------------------------------ccCcccccCCCCCEEECCCCcCCc---
Confidence 55666665554322111 111223455667777777765511
Q ss_pred cCCcccHHHHhhcCCCCCCCceEEEeeecCCC
Q 039852 557 TRKNEDDQLLLEALRPPLDLKKLEIRYYRGNT 588 (731)
Q Consensus 557 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 588 (731)
.....+..+++|+.|++.+|.+..
T Consensus 150 --------~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 150 --------IPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp --------CCTTTTTTCTTCCEEECTTSCBCT
T ss_pred --------cCHHHHhCCCCCCEEEeeCCCccC
Confidence 111335566788888888887665
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=1.9e-09 Score=111.67 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=138.4
Q ss_pred cccccEEeecCCccc--------------------cccc-cccC--------CCceeEEeccCCcCcccCccc-ccCCCC
Q 039852 408 LVHLRYLNLSGQDIV--------------------QLSE-TLCE--------LYILEKLDISYCMDLEELPEG-IKKLIN 457 (731)
Q Consensus 408 L~~Lr~L~L~~~~i~--------------------~lp~-~i~~--------L~~L~~L~l~~c~~l~~lp~~-i~~L~~ 457 (731)
+.+|++|||++|.+. .+|. .+.+ +.+|+.|++.. .+..++.. |..|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 788999999999988 2332 2445 66777777765 35555543 666777
Q ss_pred cceeeccCCccccccccc-cCCCCCCCccCceEeCCCCCcCCCcccccccccCCCCCCc-ccccCCCCCCChhhhhhccc
Q 039852 458 MRHLLNDGTDTLRYMVVG-IGRLTGLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQV-CGIRRLGDVSDVGEAKRLEL 535 (731)
Q Consensus 458 L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~-L~i~~l~~~~~~~~~~~~~l 535 (731)
|+.|++.+| .+..++.+ +..+.++..+............ ...-..+..+..|+. +.+... ..........-
T Consensus 126 L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~---~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~ 198 (329)
T 3sb4_A 126 LKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKN---RWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAG 198 (329)
T ss_dssp CCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTST---TTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTT
T ss_pred cceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccc---cccccccccccccceeEEecCC---CcHHHHHhhcc
Confidence 777777666 33344433 3333333333221100000000 000011122223331 222211 11222111111
Q ss_pred cccccCCceEEEEecCCCCcccCCcccHHHHhhcC-CCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceee
Q 039852 536 DKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEAL-RPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLH 614 (731)
Q Consensus 536 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~ 614 (731)
....++..+.+...-. ...+..+ ..+++|++|++.++.... +|.. .+..+++|+.|+
T Consensus 199 ~~~~~~~~l~~~~~l~------------~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~---------aF~~~~~L~~l~ 256 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLD------------NADFKLIRDYMPNLVSLDISKTNATT-IPDF---------TFAQKKYLLKIK 256 (329)
T ss_dssp CCGGGCSEEEEEECCC------------HHHHHHHHHHCTTCCEEECTTBCCCE-ECTT---------TTTTCTTCCEEE
T ss_pred cCccccceEEEeeeec------------HHHHHHHHHhcCCCeEEECCCCCcce-ecHh---------hhhCCCCCCEEE
Confidence 2345666666665422 1111111 126889999999887765 6653 467799999999
Q ss_pred eccccCceEeCcccccccccccCcccc-eeeccccccccccccccccccccccccCcccceeeecccccCcCCCC-CCCC
Q 039852 615 IWGMKRVKKVGDEFLGVEIIIAFPKLK-SLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPD-YIHQ 692 (731)
Q Consensus 615 L~~~~~l~~i~~~~~~~~~~~~f~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~-~~~~ 692 (731)
|.+. ++.|+...| ..+++|+ .+.+.+ +++.+..... ..+++|+.|++.+ ++++.++. .+.+
T Consensus 257 l~~n--i~~I~~~aF-----~~~~~L~~~l~l~~--~l~~I~~~aF-------~~c~~L~~l~l~~-n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 257 LPHN--LKTIGQRVF-----SNCGRLAGTLELPA--SVTAIEFGAF-------MGCDNLRYVLATG-DKITTLGDELFGN 319 (329)
T ss_dssp CCTT--CCEECTTTT-----TTCTTCCEEEEECT--TCCEECTTTT-------TTCTTEEEEEECS-SCCCEECTTTTCT
T ss_pred CCcc--cceehHHHh-----hCChhccEEEEEcc--cceEEchhhh-------hCCccCCEEEeCC-CccCccchhhhcC
Confidence 9874 888887765 4678898 888877 5666654433 3789999999866 57888874 5677
Q ss_pred CCCccEEE
Q 039852 693 TTTLKELR 700 (731)
Q Consensus 693 l~~L~~L~ 700 (731)
+++|+.|.
T Consensus 320 ~~~L~~ly 327 (329)
T 3sb4_A 320 GVPSKLIY 327 (329)
T ss_dssp TCCCCEEE
T ss_pred Ccchhhhc
Confidence 88888875
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=5.8e-11 Score=125.03 Aligned_cols=227 Identities=12% Similarity=0.002 Sum_probs=130.9
Q ss_pred hhhhccc-cccEEeecCCccccc-cccccCC-----CceeEEeccCCcCcccCccc----ccCC-CCcceeeccCCcccc
Q 039852 403 RNIEKLV-HLRYLNLSGQDIVQL-SETLCEL-----YILEKLDISYCMDLEELPEG----IKKL-INMRHLLNDGTDTLR 470 (731)
Q Consensus 403 ~~i~~L~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~c~~l~~lp~~----i~~L-~~L~~L~l~~~~~~~ 470 (731)
..+..++ +|++|+|++|.+... +..++.+ .+|++|++++|..-...+.. +..+ ++|++|++++|. +.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~ 122 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FS 122 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CC
Confidence 5677787 899999999998865 5566665 89999999996633333443 4444 899999999994 44
Q ss_pred cccc-c----cCC-CCCCCccCceEeCCCCCcCCCcccccccccCCC-CCCcccccCCCCCCChhhhhhcccccc-ccCC
Q 039852 471 YMVV-G----IGR-LTGLRTLGEFHVSGGGGVDGRKACRLESLKNLE-HLQVCGIRRLGDVSDVGEAKRLELDKK-KYLS 542 (731)
Q Consensus 471 ~~p~-~----i~~-L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~ 542 (731)
..+. . +.. .++|+.|++..+.... .........+..+. +|+.|++++..-...........+..+ .+|+
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~ 199 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGI---KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGGG---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCCH---HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCC
Confidence 4433 2 233 2578877764432221 00001122334444 788888776322111112222234444 5899
Q ss_pred ceEEEEecCCCCcccCCcccHHHHhhcCCC-CCCCceEEEeeecCCCCCcc-chhhcccCCCCCCCCCCcceeeeccccC
Q 039852 543 YLRLEFDKKKEGEETRKNEDDQLLLEALRP-PLDLKKLEIRYYRGNTVFRS-LLVQKLRAAASFGKMPSLEKLHIWGMKR 620 (731)
Q Consensus 543 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~lp~-~~~~~L~~l~~l~~l~~L~~L~L~~~~~ 620 (731)
.|+|++|...+ .....+...+.. +++|++|++++|.+.. .+. .+.. .+..+++|++|+|++|.
T Consensus 200 ~L~Ls~N~i~~-------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~------~~~~l~~L~~L~L~~n~- 264 (362)
T 3goz_A 200 SLDLSANLLGL-------KSYAELAYIFSSIPNHVVSLNLCLNCLHG-PSLENLKL------LKDSLKHLQTVYLDYDI- 264 (362)
T ss_dssp EEECTTSCGGG-------SCHHHHHHHHHHSCTTCCEEECCSSCCCC-CCHHHHHH------TTTTTTTCSEEEEEHHH-
T ss_pred EEECCCCCCCh-------hHHHHHHHHHhcCCCCceEEECcCCCCCc-HHHHHHHH------HHhcCCCccEEEeccCC-
Confidence 99998886611 112223444433 4589999999888765 332 2111 24567889999998765
Q ss_pred ceEeCccccc--ccccccCcccceeecccc
Q 039852 621 VKKVGDEFLG--VEIIIAFPKLKSLLIEDL 648 (731)
Q Consensus 621 l~~i~~~~~~--~~~~~~f~~L~~L~l~~~ 648 (731)
+..++..... ......+++|+.|+++++
T Consensus 265 l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 265 VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 2222221100 000135667777888776
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=6.6e-10 Score=102.80 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=64.9
Q ss_pred ccccccEEeecCCccc--cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccc-cccccCCCCCCC
Q 039852 407 KLVHLRYLNLSGQDIV--QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRY-MVVGIGRLTGLR 483 (731)
Q Consensus 407 ~L~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-~p~~i~~L~~L~ 483 (731)
...+|++|+|++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|. +.. +|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCC
Confidence 3478999999999998 899889999999999999965 7666 678899999999999984 444 555556677777
Q ss_pred ccCceEe
Q 039852 484 TLGEFHV 490 (731)
Q Consensus 484 ~L~~~~~ 490 (731)
.|++..+
T Consensus 99 ~L~Ls~N 105 (168)
T 2ell_A 99 HLNLSGN 105 (168)
T ss_dssp EEECBSS
T ss_pred EEeccCC
Confidence 7766443
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.93 E-value=1.2e-09 Score=106.63 Aligned_cols=150 Identities=16% Similarity=0.111 Sum_probs=108.8
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc-cCCCCCCCccCce
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLGEF 488 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~ 488 (731)
.-..++.+++.+..+|..+. .+|++|++++|......|..+..+++|++|++++| .+..+|.. +..+++|+.|++.
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECC
Confidence 35678999999999998775 89999999996533444677899999999999998 56666654 4666666666553
Q ss_pred EeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhh
Q 039852 489 HVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLE 568 (731)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 568 (731)
.+... ......+..+++|+.|+|++|... .++.
T Consensus 97 ~N~l~-----------------------------------~l~~~~~~~l~~L~~L~Ls~N~l~------------~lp~ 129 (229)
T 3e6j_A 97 TNQLT-----------------------------------VLPSAVFDRLVHLKELFMCCNKLT------------ELPR 129 (229)
T ss_dssp SSCCC-----------------------------------CCCTTTTTTCTTCCEEECCSSCCC------------SCCT
T ss_pred CCcCC-----------------------------------ccChhHhCcchhhCeEeccCCccc------------ccCc
Confidence 22111 111123456678888888888761 2334
Q ss_pred cCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeecccc
Q 039852 569 ALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMK 619 (731)
Q Consensus 569 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~ 619 (731)
.+..+++|+.|++++|.+.. +|. ..+..+++|++|+|.+++
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~-~~~---------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKS-IPH---------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCC-CCT---------TTTTTCTTCCEEECTTSC
T ss_pred ccccCCCCCEEECCCCcCCc-cCH---------HHHhCCCCCCEEEeeCCC
Confidence 55677899999999999887 654 136779999999999865
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=104.48 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=67.5
Q ss_pred cchhhhhccccccEEeecCCccccccc--cccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccccc-
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSE--TLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVVG- 475 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~- 475 (731)
.+|..+. ..+++|+|++|.++.++. .+.++.+|++|++++| .+..+|. .|..+++|++|++++| .+..+|.+
T Consensus 25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 100 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKM 100 (220)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGG
T ss_pred cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhH
Confidence 4565553 356899999999998843 4889999999999995 4666665 6899999999999999 55666554
Q ss_pred cCCCCCCCccCceEe
Q 039852 476 IGRLTGLRTLGEFHV 490 (731)
Q Consensus 476 i~~L~~L~~L~~~~~ 490 (731)
+..+++|+.|++..+
T Consensus 101 ~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 101 FKGLESLKTLMLRSN 115 (220)
T ss_dssp GTTCSSCCEEECTTS
T ss_pred hcCCcCCCEEECCCC
Confidence 788888888876433
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.90 E-value=2e-09 Score=113.16 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=24.2
Q ss_pred ccEEeecCCcccccccc-cc-CCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCC
Q 039852 411 LRYLNLSGQDIVQLSET-LC-ELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGT 466 (731)
Q Consensus 411 Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~ 466 (731)
+++|+|++|.++.+|.. +. ++.+|++|+|++| .+..+|. .|..+++|++|++++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 44445544444444333 22 4444455554442 2333332 2444444455544444
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=4.9e-10 Score=117.80 Aligned_cols=176 Identities=17% Similarity=0.120 Sum_probs=108.4
Q ss_pred ccEEeecCCccccccccccCCCceeEEeccCCcCcccCccc-cc-CCCCcceeeccCCcccccccc-ccCCCCCCCccCc
Q 039852 411 LRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEG-IK-KLINMRHLLNDGTDTLRYMVV-GIGRLTGLRTLGE 487 (731)
Q Consensus 411 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-i~-~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~ 487 (731)
-++++++++.++.+|..+. ..++.|+|++ +.+..+|.. +. .+++|++|++++| .+..++. .+..+++|+.|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 3578888888888887665 3578888888 446666655 44 7888888888887 5556554 4777888888777
Q ss_pred eEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHh
Q 039852 488 FHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLL 567 (731)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 567 (731)
..+... ......+..+.+|+.|.+++. .+.......+.++++|+.|+|+.|..... ....+
T Consensus 96 s~N~l~-------~~~~~~~~~l~~L~~L~L~~N----~i~~~~~~~~~~l~~L~~L~L~~N~l~~l--------~~~~~ 156 (361)
T 2xot_A 96 SSNHLH-------TLDEFLFSDLQALEVLLLYNN----HIVVVDRNAFEDMAQLQKLYLSQNQISRF--------PVELI 156 (361)
T ss_dssp CSSCCC-------EECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCCSC--------CGGGT
T ss_pred CCCcCC-------cCCHHHhCCCcCCCEEECCCC----cccEECHHHhCCcccCCEEECCCCcCCee--------CHHHh
Confidence 554332 112234667777777777652 22233344567778888888888766110 11122
Q ss_pred hcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCC--cceeeecccc
Q 039852 568 EALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPS--LEKLHIWGMK 619 (731)
Q Consensus 568 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~--L~~L~L~~~~ 619 (731)
..+..+++|+.|+|++|.+.. +|... +..++. |+.|+|.+++
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~-l~~~~---------~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKK-LPLTD---------LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp C----CTTCCEEECCSSCCCC-CCHHH---------HHHSCHHHHTTEECCSSC
T ss_pred cCcccCCcCCEEECCCCCCCc-cCHHH---------hhhccHhhcceEEecCCC
Confidence 222456788888888888776 65321 122444 3667776643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=8.6e-10 Score=99.77 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=62.8
Q ss_pred ccccccEEeecCCccc--cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccc-cccccCCCCCCC
Q 039852 407 KLVHLRYLNLSGQDIV--QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRY-MVVGIGRLTGLR 483 (731)
Q Consensus 407 ~L~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-~p~~i~~L~~L~ 483 (731)
...+|+.|++++|.+. .+|..++.+++|++|++++| .+..+ ..+..+++|++|++++| .+.. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 3478899999999988 88888899999999999985 46666 67888999999999988 4444 666666677777
Q ss_pred ccCceE
Q 039852 484 TLGEFH 489 (731)
Q Consensus 484 ~L~~~~ 489 (731)
.|++..
T Consensus 92 ~L~ls~ 97 (149)
T 2je0_A 92 HLNLSG 97 (149)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 776643
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=6.3e-11 Score=113.06 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=74.7
Q ss_pred CccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccC
Q 039852 398 TPKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIG 477 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 477 (731)
+..+|..++.+.+|++|+|++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|++++| .+..+| .++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccc
Confidence 5567778999999999999999999998 8999999999999994 57789988888899999999998 566666 577
Q ss_pred CCCCCCccCceEeC
Q 039852 478 RLTGLRTLGEFHVS 491 (731)
Q Consensus 478 ~L~~L~~L~~~~~~ 491 (731)
.+++|+.|++..+.
T Consensus 113 ~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK 126 (198)
T ss_dssp HHHHSSEEEESEEE
T ss_pred cCCCCCEEECCCCc
Confidence 77778877775544
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=2.4e-09 Score=99.82 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=91.5
Q ss_pred hhhccccccEEeecCCccccccccccCCC-ceeEEeccCCcCcccCcccccCCCCcceeeccCCcccccccccc-CCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSETLCELY-ILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGI-GRLTG 481 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i-~~L~~ 481 (731)
.+.++.+|++|+|++|.++.+|. +..+. +|++|++++| .+..+ ..+..+++|++|++++| .+..+|.++ +.+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 35678899999999999998865 55555 9999999995 57666 57899999999999999 677788765 78888
Q ss_pred CCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecC
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKK 551 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 551 (731)
|+.|++..+.... ...+..+..+++|+.|.+.+..- ..........+..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~~------~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVE------LGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCC------GGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCc------chhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888775544321 11123456666676666654211 000000011245566666666666543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.82 E-value=3.1e-09 Score=98.21 Aligned_cols=88 Identities=27% Similarity=0.348 Sum_probs=73.0
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccc--cccC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMV--VGIG 477 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~ 477 (731)
.+|..+..+++|++|+|++|.++.+ ..++.+++|++|++++|.....+|..+..+++|++|++++| .+..+| ..+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHh
Confidence 5777889999999999999999988 78999999999999996543447877888999999999999 666665 5677
Q ss_pred CCCCCCccCceE
Q 039852 478 RLTGLRTLGEFH 489 (731)
Q Consensus 478 ~L~~L~~L~~~~ 489 (731)
.+++|+.|++..
T Consensus 118 ~l~~L~~L~l~~ 129 (168)
T 2ell_A 118 KLECLKSLDLFN 129 (168)
T ss_dssp SCSCCCEEECCS
T ss_pred cCCCCCEEEeeC
Confidence 777777776643
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=1.8e-09 Score=97.69 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=74.2
Q ss_pred cchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccc--cccC
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMV--VGIG 477 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~ 477 (731)
.+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.....+|..+..+++|++|++++| .+..+| ..++
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHh
Confidence 5777889999999999999999988 78999999999999996533348888888999999999999 566654 6788
Q ss_pred CCCCCCccCceEe
Q 039852 478 RLTGLRTLGEFHV 490 (731)
Q Consensus 478 ~L~~L~~L~~~~~ 490 (731)
.+++|+.|++..+
T Consensus 111 ~l~~L~~L~l~~N 123 (149)
T 2je0_A 111 KLENLKSLDLFNC 123 (149)
T ss_dssp GCTTCCEEECTTC
T ss_pred hCCCCCEEeCcCC
Confidence 8888888876443
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.81 E-value=5.7e-09 Score=98.76 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=55.3
Q ss_pred cEEeecCCccccccccccCCCceeEEeccCCcCcccCccc--ccCCCCcceeeccCCcccccc-ccccCCCCCCCccCce
Q 039852 412 RYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEG--IKKLINMRHLLNDGTDTLRYM-VVGIGRLTGLRTLGEF 488 (731)
Q Consensus 412 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~ 488 (731)
++++++++.++.+|..+.. +|++|++++| .+..+|.. ++.+++|++|++++| .+..+ |..+..+++|+.|++.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 7888888888888887754 8888888884 57777653 788888999998888 44444 5567777777777664
Q ss_pred E
Q 039852 489 H 489 (731)
Q Consensus 489 ~ 489 (731)
.
T Consensus 87 ~ 87 (192)
T 1w8a_A 87 E 87 (192)
T ss_dssp S
T ss_pred C
Confidence 3
No 132
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.80 E-value=1.2e-08 Score=109.46 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=81.1
Q ss_pred CCccccchhHHHHHHHHH-hcCCCC--CCCCcEEEeeeccCcchHHHHHHHHHcchhhh---cccc-eEEEEEeCCCCCH
Q 039852 177 EEEICGRVGERNELLSKM-LCESSD--QQKGLHIISIVGMGGIGKTTLAQLASNHVEVK---REFH-KILWACVSETFDE 249 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L-~~~~~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 249 (731)
+..++||+++++++.+++ .....+ .....-+|+|+|++|+||||||+.+++..... ..|. ..+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 432110 01233344449999999999999999853321 1123 3677777677788
Q ss_pred HHHHHHHHHHccCCCCC-hhhHHHHHHHHHHHhC--CCceEEEehhhHH
Q 039852 250 FRIAKAMLEALTGSTSN-LDALQSLLISIDESIA--GKRFLLVLDDVML 295 (731)
Q Consensus 250 ~~i~~~i~~~~~~~~~~-~~~~~~~~~~l~~~l~--~kr~llvlDdvw~ 295 (731)
..++..++.+++...+. ..+.......+.+.+. +++++||+||+|+
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 99999999988654321 2223344455555554 7899999999986
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.77 E-value=5.3e-09 Score=116.16 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=75.0
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCceE
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFH 489 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 489 (731)
.|++|+|++|.++.+|. +++|.+|++|+|++| .+..+|..++.|++|++|++++| .+..+| .++.|++|+.|++..
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 58889999999888886 888999999999984 57788888999999999999888 566677 788888888887754
Q ss_pred eCCCCCcCCCcccc-cccccCCCCCCcccccC
Q 039852 490 VSGGGGVDGRKACR-LESLKNLEHLQVCGIRR 520 (731)
Q Consensus 490 ~~~~~~~~~~~~~~-~~~l~~L~~L~~L~i~~ 520 (731)
+.... .. +..+..|++|+.|++++
T Consensus 518 N~l~~-------~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 518 NRLQQ-------SAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp SCCCS-------SSTTGGGGGCTTCCEEECTT
T ss_pred CCCCC-------CCCcHHHhcCCCCCEEEecC
Confidence 43321 11 34555566666655554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.77 E-value=1.3e-08 Score=96.25 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=48.2
Q ss_pred cEEeecCCccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCcccccccc-ccCCCCCCCccCce
Q 039852 412 RYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVV-GIGRLTGLRTLGEF 488 (731)
Q Consensus 412 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~ 488 (731)
++++++++.++.+|..+. .+|+.|++++ +.+..+|..+..+++|++|++++| .+..++. .+..+++|+.|++.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC
Confidence 567777777777776654 4677777777 446677777777777777777777 4444443 35666666666553
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.73 E-value=3e-09 Score=121.98 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=74.6
Q ss_pred CccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCceEeCCCCCcCC
Q 039852 419 QDIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEFHVSGGGGVDG 498 (731)
Q Consensus 419 ~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~ 498 (731)
+.+...|..+..+.+|++|+|++| .+..+|..+.++++|++|+|++| .+..+|..++.|++|+.|++..+....
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~---- 284 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTS---- 284 (727)
T ss_dssp -----------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSS----
T ss_pred cceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCc----
Confidence 344455677888999999999984 46788888889999999999988 566888888888888888775443321
Q ss_pred CcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecC
Q 039852 499 RKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKK 551 (731)
Q Consensus 499 ~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 551 (731)
.+..+..|++|+.|.+++.. +. .++..+.++++|+.|+|+.|..
T Consensus 285 ----lp~~~~~l~~L~~L~L~~N~----l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 285 ----LPAELGSCFQLKYFYFFDNM----VT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ----CCSSGGGGTTCSEEECCSSC----CC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred ----cChhhcCCCCCCEEECCCCC----CC-ccChhhhcCCCccEEeCCCCcc
Confidence 23455666667776666521 11 2223356666677777666655
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.72 E-value=2.3e-08 Score=94.49 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=68.9
Q ss_pred ccchhhhhccccccEEeecCCccccccccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccccccc-cc
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVV-GI 476 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i 476 (731)
..+|..+. .+|++|+|++|.++.+|..+.++.+|++|++++| .+..++. .|..+++|++|++++| .+..+|. .+
T Consensus 23 ~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f 98 (193)
T 2wfh_A 23 KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTF 98 (193)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 34565543 5899999999999999999999999999999995 5666664 5899999999999999 5666655 47
Q ss_pred CCCCCCCccCce
Q 039852 477 GRLTGLRTLGEF 488 (731)
Q Consensus 477 ~~L~~L~~L~~~ 488 (731)
..+++|+.|++.
T Consensus 99 ~~l~~L~~L~L~ 110 (193)
T 2wfh_A 99 DGLKSLRLLSLH 110 (193)
T ss_dssp TTCTTCCEEECC
T ss_pred CCCCCCCEEECC
Confidence 777777777664
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.72 E-value=1.9e-08 Score=95.13 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=68.3
Q ss_pred ccchhhhhccccccEEeecCCcccccccc--ccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccc
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQLSET--LCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~ 475 (731)
..+|..+.. +|++|+|++|.+..+|.. ++++.+|++|++++|. +..+ |..+..+++|++|++++| .+..+|..
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 96 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISNK 96 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECSS
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-cCCccCHH
Confidence 346665543 899999999999998864 8999999999999955 5555 778999999999999999 55555544
Q ss_pred -cCCCCCCCccCceE
Q 039852 476 -IGRLTGLRTLGEFH 489 (731)
Q Consensus 476 -i~~L~~L~~L~~~~ 489 (731)
+..+++|+.|++..
T Consensus 97 ~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYD 111 (192)
T ss_dssp SSTTCTTCCEEECCS
T ss_pred HhcCCCCCCEEECCC
Confidence 67777777776643
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=2.2e-08 Score=103.72 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred CCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccc-eeeecccccCcC
Q 039852 607 MPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLS-SFEIKWCPKLKA 685 (731)
Q Consensus 607 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~-~L~i~~c~~L~~ 685 (731)
+++|+.|+|.++. ++.++...+ ..+++|+.|.+.+. ++.++.... ..+++|+ .|.+.+ +++.
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF-----~~~~~L~~l~l~~n--i~~I~~~aF-------~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTF-----AQKKYLLKIKLPHN--LKTIGQRVF-------SNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTT-----TTCTTCCEEECCTT--CCEECTTTT-------TTCTTCCEEEEECT--TCCE
T ss_pred cCCCeEEECCCCC-cceecHhhh-----hCCCCCCEEECCcc--cceehHHHh-------hCChhccEEEEEcc--cceE
Confidence 7899999999754 889988765 46789999999874 666655443 3788999 999987 7888
Q ss_pred CC-CCCCCCCCccEEEEcc
Q 039852 686 LP-DYIHQTTTLKELRILM 703 (731)
Q Consensus 686 lp-~~~~~l~~L~~L~l~~ 703 (731)
++ ..+..+++|+.|++.+
T Consensus 288 I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp ECTTTTTTCTTEEEEEECS
T ss_pred EchhhhhCCccCCEEEeCC
Confidence 86 5678899999999864
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.58 E-value=5.5e-08 Score=90.18 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=57.7
Q ss_pred ccchhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-
Q 039852 399 PKIPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG- 475 (731)
Q Consensus 399 ~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~- 475 (731)
..+|..+. .+|++|+|++|.+..+ |..+.++.+|++|+|++ +.+..+|.. +.++++|++|++++| .+..+|.+
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 100 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA 100 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence 34555443 6777777777777766 44577777777777777 456666665 467777777777777 55566655
Q ss_pred cCCCCCCCccCceE
Q 039852 476 IGRLTGLRTLGEFH 489 (731)
Q Consensus 476 i~~L~~L~~L~~~~ 489 (731)
+..+++|+.|++..
T Consensus 101 ~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 101 FDNLKSLTHIYLYN 114 (174)
T ss_dssp TTTCTTCSEEECCS
T ss_pred hccccCCCEEEeCC
Confidence 66666676666543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=8.1e-10 Score=105.30 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=98.9
Q ss_pred ccEEeecCC--ccccccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccccCCCCCCCccCce
Q 039852 411 LRYLNLSGQ--DIVQLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVGIGRLTGLRTLGEF 488 (731)
Q Consensus 411 Lr~L~L~~~--~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 488 (731)
|+.+.++++ .++.+|..++++.+|++|++++| .+..+| .+..+++|++|++++| .+..+|..+..+++|+.|++.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 444444443 35566668999999999999994 577788 8999999999999998 566777666666677777664
Q ss_pred EeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHhh
Q 039852 489 HVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLE 568 (731)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 568 (731)
.+.... .. .+..+++|+.|++++|... ....+.
T Consensus 102 ~N~l~~--------------------------------l~-----~~~~l~~L~~L~l~~N~i~----------~~~~~~ 134 (198)
T 1ds9_A 102 YNQIAS--------------------------------LS-----GIEKLVNLRVLYMSNNKIT----------NWGEID 134 (198)
T ss_dssp EEECCC--------------------------------HH-----HHHHHHHSSEEEESEEECC----------CHHHHH
T ss_pred CCcCCc--------------------------------CC-----ccccCCCCCEEECCCCcCC----------chhHHH
Confidence 432211 00 2445678888888888761 112224
Q ss_pred cCCCCCCCceEEEeeecCCCCCcc------chhhcccCCCCCCCCCCcceee
Q 039852 569 ALRPPLDLKKLEIRYYRGNTVFRS------LLVQKLRAAASFGKMPSLEKLH 614 (731)
Q Consensus 569 ~l~~~~~L~~L~l~~~~~~~~lp~------~~~~~L~~l~~l~~l~~L~~L~ 614 (731)
.+..+++|++|++++|...+.+|. +... .+..+|+|++|+
T Consensus 135 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~------~~~~l~~L~~Ld 180 (198)
T 1ds9_A 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE------VVKRLPNLKKLD 180 (198)
T ss_dssp HHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH------HHHHCSSCSEEC
T ss_pred HHhcCCCCCEEEecCCccccccccccchHHHHHH------HHHhCCCcEEEC
Confidence 566778899999998876552222 1100 135578888887
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=3.6e-08 Score=91.78 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=81.1
Q ss_pred hhccc-cccEEeecCCccccccccccCCCceeEEeccCCcCcccCcccc-cCCCCcceeeccCCcccccccc--ccCCCC
Q 039852 405 IEKLV-HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEGI-KKLINMRHLLNDGTDTLRYMVV--GIGRLT 480 (731)
Q Consensus 405 i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~--~i~~L~ 480 (731)
+..+. +|++|+|++|.++.+ ..++.+.+|++|++++| .+..+|..+ ..+++|++|++++| .+..+|. .++.++
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 44555 999999999999988 68899999999999994 577788665 89999999999998 6677887 688888
Q ss_pred CCCccCceEeCCCCCcCCCcccccccccCCCCCCcccccC
Q 039852 481 GLRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRR 520 (731)
Q Consensus 481 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~ 520 (731)
+|+.|++..+.... ........+..+++|+.|++..
T Consensus 114 ~L~~L~l~~N~i~~----~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 114 SLTYLCILRNPVTN----KKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp TCCEEECCSSGGGG----STTHHHHHHHHCTTCSEETTEE
T ss_pred CCCEEEecCCCCCC----cHhHHHHHHHHCCccceeCCCc
Confidence 88888775443221 0011011256777788877765
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.52 E-value=1.9e-07 Score=86.88 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=50.4
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-cCCCCCCCccCc
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLGE 487 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~ 487 (731)
..+.++++++.+..+|..+. .+|+.|++++| .+..+|.. +..+++|++|++++| .+..+|.. ++.+++|+.|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence 35677888888888876554 57888888884 45566554 577888888888877 45555544 456666666655
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.51 E-value=1.1e-07 Score=87.78 Aligned_cols=85 Identities=25% Similarity=0.382 Sum_probs=53.7
Q ss_pred chhhhhccccccEEeecCCccccc-cccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-cC
Q 039852 401 IPRNIEKLVHLRYLNLSGQDIVQL-SETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-IG 477 (731)
Q Consensus 401 lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~ 477 (731)
+|..+. .+|++|+|++|.++.+ |..+.++.+|++|+|++ +.+..+|.. +..+++|++|++++| .+..+|.+ +.
T Consensus 24 ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~ 99 (170)
T 3g39_A 24 VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD 99 (170)
T ss_dssp CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhc
Confidence 444442 5677777777777766 44567777777777777 345566654 466777777777776 45555554 56
Q ss_pred CCCCCCccCceE
Q 039852 478 RLTGLRTLGEFH 489 (731)
Q Consensus 478 ~L~~L~~L~~~~ 489 (731)
.+++|+.|++..
T Consensus 100 ~l~~L~~L~L~~ 111 (170)
T 3g39_A 100 NLKSLTHIWLLN 111 (170)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEEeCC
Confidence 666666665543
No 144
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.50 E-value=1.8e-07 Score=99.05 Aligned_cols=116 Identities=19% Similarity=0.127 Sum_probs=82.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhc----c--cceEEEEEeCCCC-CHH
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKR----E--FHKILWACVSETF-DEF 250 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~ 250 (731)
.+++||+++++++.+++..... ....+.+.|+|++|+||||+|+.+++...-.. . ....+|++.+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6899999999999988764211 12356899999999999999999998432211 1 3357788877766 888
Q ss_pred HHHHHHHHHccCCCC--ChhhHHHHHHHHHHHhCCCceEEEehhhHH
Q 039852 251 RIAKAMLEALTGSTS--NLDALQSLLISIDESIAGKRFLLVLDDVML 295 (731)
Q Consensus 251 ~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~l~~kr~llvlDdvw~ 295 (731)
.+...++.++.+... ...........+.+.+..++.+||+||++.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~ 144 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDT 144 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHH
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHH
Confidence 888888888743221 112234455667777777766999999975
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.44 E-value=7.3e-07 Score=94.40 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=83.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhc---c-cceEEEEEeCCCCCHHHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKR---E-FHKILWACVSETFDEFRI 252 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~i 252 (731)
+..++||+.+++++..++..... ....+.+.|+|++|+||||+|+.+++...-.. . -...+|++.....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999999865321 12456889999999999999999998432110 0 124677888888888999
Q ss_pred HHHHHHHccCCCCC-hhhHHHHHHHHHHHh--CCCceEEEehhhHH
Q 039852 253 AKAMLEALTGSTSN-LDALQSLLISIDESI--AGKRFLLVLDDVML 295 (731)
Q Consensus 253 ~~~i~~~~~~~~~~-~~~~~~~~~~l~~~l--~~kr~llvlDdvw~ 295 (731)
...++.+++..... ..........+.+.+ .+++.+||+||+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~ 141 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF 141 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh
Confidence 99999988654322 122344455555555 35688999999864
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=4.7e-06 Score=88.13 Aligned_cols=256 Identities=11% Similarity=0.121 Sum_probs=157.7
Q ss_pred hhhccccccEEeecCCcccccccc-ccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCccccccccccCCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSET-LCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVVGIGRLTG 481 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 481 (731)
.|.+. +|+.+.|..+ ++.++.. +.+ .+|+.+.+.. .+..++. .|.+|.+|+.+++.+| .+..+|.+....++
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecc
Confidence 45553 6888888665 6767654 444 4688888875 4555654 4778888999988876 66777777555677
Q ss_pred CCccCceEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcc
Q 039852 482 LRTLGEFHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNE 561 (731)
Q Consensus 482 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 561 (731)
|+.+.+-.. -. ...-..+.++.+|+.+.+.. ++.. .....+.+ .+|+.+.|..+-.
T Consensus 205 L~~l~lp~~--l~------~I~~~aF~~~~~L~~l~l~~--~l~~---I~~~aF~~-~~L~~i~lp~~i~---------- 260 (401)
T 4fdw_A 205 IEEVLLPVT--LK------EIGSQAFLKTSQLKTIEIPE--NVST---IGQEAFRE-SGITTVKLPNGVT---------- 260 (401)
T ss_dssp CSEEECCTT--CC------EECTTTTTTCTTCCCEECCT--TCCE---ECTTTTTT-CCCSEEEEETTCC----------
T ss_pred cCEEEeCCc--hh------eehhhHhhCCCCCCEEecCC--CccC---cccccccc-CCccEEEeCCCcc----------
Confidence 776654210 00 11223455666777766653 1111 11223334 5788888843211
Q ss_pred cHHHHhhcCCCCCCCceEEEeeecCCC----CCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccC
Q 039852 562 DDQLLLEALRPPLDLKKLEIRYYRGNT----VFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAF 637 (731)
Q Consensus 562 ~~~~~~~~l~~~~~L~~L~l~~~~~~~----~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f 637 (731)
......+..+++|+.+.+.++.... .++. ..+..+++|+.+.|.+ .++.++...+ ..+
T Consensus 261 --~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~---------~aF~~c~~L~~l~l~~--~i~~I~~~aF-----~~c 322 (401)
T 4fdw_A 261 --NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP---------YCLEGCPKLARFEIPE--SIRILGQGLL-----GGN 322 (401)
T ss_dssp --EECTTTTTTCTTCCEEEEESSCCCCCTTCEECT---------TTTTTCTTCCEECCCT--TCCEECTTTT-----TTC
T ss_pred --EEChhHhhCCCCCCEEEeCCccccCCcccEECH---------HHhhCCccCCeEEeCC--ceEEEhhhhh-----cCC
Confidence 0112456778899999998766531 0222 2467799999999984 4888887765 467
Q ss_pred cccceeeccccccccccccccccccccccccCcccceeeecccccCcCCC-CCCCCC-CCccEEEEccCchhHHhhccCC
Q 039852 638 PKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP-DYIHQT-TTLKELRILMCGLLKERYRKGK 715 (731)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-~~~~~l-~~L~~L~l~~c~~L~~~~~~~~ 715 (731)
++|+.+.|.+ ++..+..... ..+ +|+.|.+.++ .+..++ ..+..+ .++..|.+-. .-.+.++..
T Consensus 323 ~~L~~l~lp~--~l~~I~~~aF-------~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~--~~~~~y~~a- 388 (401)
T 4fdw_A 323 RKVTQLTIPA--NVTQINFSAF-------NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA--ESVEKYKNA- 388 (401)
T ss_dssp CSCCEEEECT--TCCEECTTSS-------SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG--GGHHHHHHS-
T ss_pred CCccEEEECc--cccEEcHHhC-------CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH--HHHHHhhhc-
Confidence 8899998865 3555554433 266 9999999885 555555 334445 4778888865 234555433
Q ss_pred CCCcccc
Q 039852 716 GQDWAKI 722 (731)
Q Consensus 716 ~~~~~~i 722 (731)
..|...
T Consensus 389 -~~W~~f 394 (401)
T 4fdw_A 389 -NGWRDF 394 (401)
T ss_dssp -TTGGGG
T ss_pred -cchhhh
Confidence 346544
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.41 E-value=3.9e-07 Score=96.45 Aligned_cols=115 Identities=18% Similarity=0.290 Sum_probs=80.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhccc---ceEEEEEeCCCCCHHHHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREF---HKILWACVSETFDEFRIA 253 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~i~ 253 (731)
+..++||+++++.+.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ...+|+......+...+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998875311 124568899999999999999999984 33332 246777777767778888
Q ss_pred HHHHHHccCCCCC-hhhHHHHHHHHHHHhC--CCceEEEehhhHH
Q 039852 254 KAMLEALTGSTSN-LDALQSLLISIDESIA--GKRFLLVLDDVML 295 (731)
Q Consensus 254 ~~i~~~~~~~~~~-~~~~~~~~~~l~~~l~--~kr~llvlDdvw~ 295 (731)
..++.+++..... ..........+.+.+. +++.+||+||++.
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHH
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhh
Confidence 8888777543221 1123333444555443 4589999999975
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.40 E-value=5.9e-07 Score=83.51 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=66.2
Q ss_pred cchhhhhccccccEEeecCCcccccccc-ccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccc-c
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIVQLSET-LCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVG-I 476 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i 476 (731)
.+|..+ ..+|++|++++|.+..+|.. +.++.+|++|++++| .+..+|.. +..+++|++|++++| .+..+|.. +
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 96 (177)
T 2o6r_A 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVF 96 (177)
T ss_dssp SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHh
Confidence 455443 36899999999999988765 689999999999995 57777765 689999999999998 56666654 5
Q ss_pred CCCCCCCccCce
Q 039852 477 GRLTGLRTLGEF 488 (731)
Q Consensus 477 ~~L~~L~~L~~~ 488 (731)
+.+++|+.|++.
T Consensus 97 ~~l~~L~~L~l~ 108 (177)
T 2o6r_A 97 DKLTQLKELALD 108 (177)
T ss_dssp TTCTTCCEEECC
T ss_pred hCCcccCEEECc
Confidence 677777777664
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.38 E-value=5.4e-07 Score=83.39 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=62.1
Q ss_pred ccEEeecCCccccccccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccc-cCCCCCCCccCce
Q 039852 411 LRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLGEF 488 (731)
Q Consensus 411 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~ 488 (731)
-++++++++.+..+|..+. .+|++|++++| .+..+ |..|.++++|++|++++| .+..+|.+ +..+++|+.|++.
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 4789999999999999875 89999999995 46666 667899999999999999 67778776 4678888877764
Q ss_pred E
Q 039852 489 H 489 (731)
Q Consensus 489 ~ 489 (731)
.
T Consensus 90 ~ 90 (174)
T 2r9u_A 90 D 90 (174)
T ss_dssp S
T ss_pred C
Confidence 3
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.38 E-value=1.3e-06 Score=92.59 Aligned_cols=116 Identities=15% Similarity=0.050 Sum_probs=80.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhccc-ceEEEEEeCCCCCHHHHHHHH
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREF-HKILWACVSETFDEFRIAKAM 256 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i 256 (731)
+.++||+++++++.+++...........+.+.|+|..|+||||+|+.+++. ..... ...+|+..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999887531100123458999999999999999999984 33221 246777777888888999999
Q ss_pred HHHccCCCCC-hhhHHHHHHHHHHHhC--CCceEEEehhhHH
Q 039852 257 LEALTGSTSN-LDALQSLLISIDESIA--GKRFLLVLDDVML 295 (731)
Q Consensus 257 ~~~~~~~~~~-~~~~~~~~~~l~~~l~--~kr~llvlDdvw~ 295 (731)
+..++..... ..........+...+. +++.+||+||+..
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 136 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN 136 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGG
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccc
Confidence 9888653221 1223334444444443 6688999999864
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.37 E-value=6.1e-07 Score=82.76 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=62.1
Q ss_pred cccEEeecCCccccccccccCCCceeEEeccCCcCcccC-cccccCCCCcceeeccCCccccccccc-cCCCCCCCccCc
Q 039852 410 HLRYLNLSGQDIVQLSETLCELYILEKLDISYCMDLEEL-PEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLGE 487 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~ 487 (731)
..+.++++++.++.+|..+. .+|++|++++| .+..+ |..|..+++|++|++++| .+..+|.+ +..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 46789999999999998874 89999999994 56666 666999999999999999 66777776 467777777766
Q ss_pred eE
Q 039852 488 FH 489 (731)
Q Consensus 488 ~~ 489 (731)
..
T Consensus 86 ~~ 87 (170)
T 3g39_A 86 ND 87 (170)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 152
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.36 E-value=3.7e-07 Score=95.24 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=72.0
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC------CH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF------DE 249 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 249 (731)
....++||+++.+++.+++.. + +++.|+|++|+|||||++.+.+.. . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 445799999999999998863 1 589999999999999999998742 1 6677765432 56
Q ss_pred HHHHHHHHHHccC----------------CCC--ChhhHHHHHHHHHHHhCC-CceEEEehhhH
Q 039852 250 FRIAKAMLEALTG----------------STS--NLDALQSLLISIDESIAG-KRFLLVLDDVM 294 (731)
Q Consensus 250 ~~i~~~i~~~~~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~llvlDdvw 294 (731)
..+...+...+.. ... ...........+.+.... ++++||+||++
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~ 138 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQ 138 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHH
Confidence 6666666665432 000 113345555556555542 38999999984
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=6.1e-07 Score=93.50 Aligned_cols=91 Identities=15% Similarity=0.042 Sum_probs=73.7
Q ss_pred CccchhhhhccccccEEeecC-Ccccccc-ccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccccccc
Q 039852 398 TPKIPRNIEKLVHLRYLNLSG-QDIVQLS-ETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVV 474 (731)
Q Consensus 398 ~~~lp~~i~~L~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~ 474 (731)
+..+|. |..+.+|++|+|++ |.+..+| ..+++|.+|++|+|++| .+..+|. .|.+|++|++|+|++| .+..+|.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCH
Confidence 345888 99999999999996 9999888 56999999999999995 5666654 6899999999999999 6778888
Q ss_pred ccCCCCCCCccCceEeC
Q 039852 475 GIGRLTGLRTLGEFHVS 491 (731)
Q Consensus 475 ~i~~L~~L~~L~~~~~~ 491 (731)
++.....|+.|.+..+.
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 75544448888765543
No 154
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.16 E-value=3.2e-06 Score=88.31 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=49.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC-----CCHH
Q 039852 176 DEEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET-----FDEF 250 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 250 (731)
....++||+++.+.+.+ +. . +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------~-~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------A-PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------S-SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc--------C-CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 44679999999999998 64 1 599999999999999999999843 22 2578887642 3445
Q ss_pred HHHHHHHH
Q 039852 251 RIAKAMLE 258 (731)
Q Consensus 251 ~i~~~i~~ 258 (731)
.+...+..
T Consensus 76 ~~~~~l~~ 83 (357)
T 2fna_A 76 DFLLELQK 83 (357)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.13 E-value=1.4e-05 Score=78.33 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=39.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
.+++||+..++.+..++.... ..+++.|+|.+|+||||+|+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999987543 23488999999999999999998743
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.08 E-value=5.1e-06 Score=83.76 Aligned_cols=113 Identities=10% Similarity=0.038 Sum_probs=75.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhc------ccceEEEEEeCCCCCHHHH
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKR------EFHKILWACVSETFDEFRI 252 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~i 252 (731)
.+.||+++.+++...|...-. +...+.+-|+|.+|.|||++|+.|.++-.... .| ..+.++.....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 489999999999988875432 23567889999999999999999998543211 12 2455666677788899
Q ss_pred HHHHHHHccCCCCCh-hhHHHHHHHHHHH--hCCCceEEEehhhH
Q 039852 253 AKAMLEALTGSTSNL-DALQSLLISIDES--IAGKRFLLVLDDVM 294 (731)
Q Consensus 253 ~~~i~~~~~~~~~~~-~~~~~~~~~l~~~--l~~kr~llvlDdvw 294 (731)
...|++++.+..... ...+.+...+... -.++.++++||++.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d 142 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPE 142 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCS
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHH
Confidence 999999997643211 1223233333321 24678899999974
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.06 E-value=1.9e-05 Score=83.50 Aligned_cols=219 Identities=13% Similarity=0.100 Sum_probs=126.5
Q ss_pred cccEEeecCCcccccc-ccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccccccccc-cCCCCCCCccCc
Q 039852 410 HLRYLNLSGQDIVQLS-ETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTLRYMVVG-IGRLTGLRTLGE 487 (731)
Q Consensus 410 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~ 487 (731)
+|+.+.|.. .+..++ ..+.++.+|+.+++.. +.+..+|.....+.+|+.+.+..+ +..++.+ +..+++|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 577777765 456565 3466777788888776 456677766444677777777643 4555554 566667776654
Q ss_pred eEeCCCCCcCCCcccccccccCCCCCCcccccCCCCCCChhhhhhccccccccCCceEEEEecCCCCcccCCcccHHHHh
Q 039852 488 FHVSGGGGVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLL 567 (731)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 567 (731)
-.. +. ......+.+ .+|+.+.+.+ .........+.+|.+|+.+.+..+...... ......
T Consensus 234 ~~~-----l~---~I~~~aF~~-~~L~~i~lp~-----~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~------~~~I~~ 293 (401)
T 4fdw_A 234 PEN-----VS---TIGQEAFRE-SGITTVKLPN-----GVTNIASRAFYYCPELAEVTTYGSTFNDDP------EAMIHP 293 (401)
T ss_dssp CTT-----CC---EECTTTTTT-CCCSEEEEET-----TCCEECTTTTTTCTTCCEEEEESSCCCCCT------TCEECT
T ss_pred CCC-----cc---Ccccccccc-CCccEEEeCC-----CccEEChhHhhCCCCCCEEEeCCccccCCc------ccEECH
Confidence 210 00 001112222 3555555532 112223345778889999998776441000 000112
Q ss_pred hcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccc
Q 039852 568 EALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIED 647 (731)
Q Consensus 568 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~ 647 (731)
..+..+++|+.+.+.. .... ++. ..+..+++|+.+.|.. .++.++...+ ..+ +|+.+.+.+
T Consensus 294 ~aF~~c~~L~~l~l~~-~i~~-I~~---------~aF~~c~~L~~l~lp~--~l~~I~~~aF-----~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPE-SIRI-LGQ---------GLLGGNRKVTQLTIPA--NVTQINFSAF-----NNT-GIKEVKVEG 354 (401)
T ss_dssp TTTTTCTTCCEECCCT-TCCE-ECT---------TTTTTCCSCCEEEECT--TCCEECTTSS-----SSS-CCCEEEECC
T ss_pred HHhhCCccCCeEEeCC-ceEE-Ehh---------hhhcCCCCccEEEECc--cccEEcHHhC-----CCC-CCCEEEEcC
Confidence 3466788899998873 2222 333 2467789999999964 3788887655 355 899999987
Q ss_pred cccccccccccccccccccccCc-ccceeeecc
Q 039852 648 LLELEEWDYGITRTGNTVIDIMP-RLSSFEIKW 679 (731)
Q Consensus 648 ~~~l~~~~~~~~~~~~~~~~~~p-~L~~L~i~~ 679 (731)
. .+..+.... +..+| ++..|.+-.
T Consensus 355 n-~~~~l~~~~-------F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 355 T-TPPQVFEKV-------WYGFPDDITVIRVPA 379 (401)
T ss_dssp S-SCCBCCCSS-------CCCSCTTCCEEEECG
T ss_pred C-CCccccccc-------ccCCCCCccEEEeCH
Confidence 6 333333221 12443 567777643
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=1.6e-06 Score=90.05 Aligned_cols=85 Identities=25% Similarity=0.196 Sum_probs=51.6
Q ss_pred cchhhhhccccccEEeecCCccc----------cccccccCCCceeEEeccCCcCcccCcccccCCCCcceeeccCCccc
Q 039852 400 KIPRNIEKLVHLRYLNLSGQDIV----------QLSETLCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDGTDTL 469 (731)
Q Consensus 400 ~lp~~i~~L~~Lr~L~L~~~~i~----------~lp~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~~~~~ 469 (731)
.++.++..+++|+.|.+.+.... .++..+..+++|+.|++++|..+ .+|. + .+++|++|++..|...
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCC
Confidence 35566778889999988654321 24445567788888888886433 3444 3 3788888888766311
Q ss_pred ccccccc--CCCCCCCccCc
Q 039852 470 RYMVVGI--GRLTGLRTLGE 487 (731)
Q Consensus 470 ~~~p~~i--~~L~~L~~L~~ 487 (731)
......+ ..+++|+.|.+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEE
T ss_pred hHHHHHHHHccCCCCcEEEE
Confidence 1111122 25666666655
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1.4e-06 Score=79.39 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=37.9
Q ss_pred cCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCC-CCCCCCCCccEEEEccCchhHH
Q 039852 636 AFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALP-DYIHQTTTLKELRILMCGLLKE 709 (731)
Q Consensus 636 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~l~~c~~L~~ 709 (731)
.+++|+.|++++|..+++......... ....++|++|+|++|+++++-. ..+..+++|++|++++||.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~---~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQL---ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTC---HHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhc---ccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 455566666666554444332211100 0012467777777777766521 1234567777777777776543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=5.8e-07 Score=81.85 Aligned_cols=96 Identities=8% Similarity=-0.034 Sum_probs=69.3
Q ss_pred CCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeecccccccc
Q 039852 573 PLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELE 652 (731)
Q Consensus 573 ~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~ 652 (731)
..+|++|++++|.... ..+..+..+++|++|+|++|..++.-+-..+... ....++|++|++++|++++
T Consensus 60 ~~~L~~LDLs~~~Itd----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMS----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCCEEEEEEESCCCCG----------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCC
T ss_pred CceEeEEeCcCCCccH----------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCC
Confidence 4589999999997533 2344567899999999999998775443322110 0023689999999998776
Q ss_pred ccccccccccccccccCcccceeeecccccCcCC
Q 039852 653 EWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKAL 686 (731)
Q Consensus 653 ~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~l 686 (731)
+-.... +..+|+|++|++++|+.++..
T Consensus 129 D~Gl~~-------L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 129 DKGIIA-------LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHH-------GGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHH-------HhcCCCCCEEECCCCCCCCch
Confidence 644332 227899999999999988863
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.95 E-value=3.3e-05 Score=72.35 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=38.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++||+++++++.+.+... ..+.+.|+|..|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998742 3345789999999999999999884
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.94 E-value=9.9e-06 Score=84.25 Aligned_cols=79 Identities=19% Similarity=0.109 Sum_probs=65.8
Q ss_pred cEEeecCC-ccccccccccCCCceeEEeccCCcCcccCcc-cccCCCCcceeeccCCcccccccc-ccCCCCCCCccCce
Q 039852 412 RYLNLSGQ-DIVQLSETLCELYILEKLDISYCMDLEELPE-GIKKLINMRHLLNDGTDTLRYMVV-GIGRLTGLRTLGEF 488 (731)
Q Consensus 412 r~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~ 488 (731)
..++++++ .++.+|. +..+.+|+.|+|++++.+..+|. .|..|++|++|+|++| .+..+|. .++.|++|+.|++.
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 8999999 99999999999997566877774 6999999999999999 5666665 47899999999886
Q ss_pred EeCC
Q 039852 489 HVSG 492 (731)
Q Consensus 489 ~~~~ 492 (731)
.+..
T Consensus 89 ~N~l 92 (347)
T 2ifg_A 89 FNAL 92 (347)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 5543
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.80 E-value=8.9e-07 Score=92.77 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=39.8
Q ss_pred cccccEEeecCCcccccc-----cccc-CCCceeEEeccCCcCccc-CcccccCCCCcceeeccCC
Q 039852 408 LVHLRYLNLSGQDIVQLS-----ETLC-ELYILEKLDISYCMDLEE-LPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 408 L~~Lr~L~L~~~~i~~lp-----~~i~-~L~~L~~L~l~~c~~l~~-lp~~i~~L~~L~~L~l~~~ 466 (731)
+.+|++|+|++|.++... ..+. ...+|+.|+|++|..-.. +..-...+.+|++|++++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 568999999999987432 2222 237999999999653221 1122334678999999998
No 164
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.74 E-value=0.0001 Score=70.75 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+++|+++.++.+.+++.... .+.+.|+|.+|+||||+|+.+++.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999997432 223899999999999999999984
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.72 E-value=7e-05 Score=69.70 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++||+.+++.+.+.+... ..+.+-|+|..|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998642 2345689999999999999999884
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=0.00013 Score=74.72 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|++..++.+.+++..+. .+.+-|+|++|+||||+|+.+++.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH
Confidence 569999999999999987432 223889999999999999999984
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.59 E-value=2.9e-05 Score=80.55 Aligned_cols=43 Identities=16% Similarity=0.031 Sum_probs=27.8
Q ss_pred ccccccCCCceeEEeccCCcC---------cccCcccccCCCCcceeeccCC
Q 039852 424 LSETLCELYILEKLDISYCMD---------LEELPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 424 lp~~i~~L~~L~~L~l~~c~~---------l~~lp~~i~~L~~L~~L~l~~~ 466 (731)
+++++.++++|+.|.+..... ...++.-+..+++|+.|.+++|
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 455677788899998865321 1124444566778888888776
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.56 E-value=5.3e-06 Score=86.81 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=60.3
Q ss_pred hhhhhhhccCCcHHHHHHHHHhhcccCCCcCCccchhhhh-ccccccEEeecCCcccc--ccccccCCCceeEEeccCCc
Q 039852 367 LTPLRLSYNDLPSRVKRCFSYCAIFVNRSSLTPKIPRNIE-KLVHLRYLNLSGQDIVQ--LSETLCELYILEKLDISYCM 443 (731)
Q Consensus 367 ~~~L~lsy~~L~~~~k~cf~~~~~f~~rs~~~~~lp~~i~-~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~c~ 443 (731)
++.+.++++.+....-..+ ...+. ...+|++|+|++|.+.. +..-...+.+|+.|+|++|.
T Consensus 74 L~~L~Ls~n~l~~~~~~~l----------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVV----------------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp CCEEECTTSCCCHHHHHHH----------------HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred CCEEEecCCCCCHHHHHHH----------------HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 4456778887766332221 12222 23689999999998763 22223356789999999964
Q ss_pred CcccC-----cccc-cCCCCcceeeccCCccccc-----cccccCCCCCCCccCc
Q 039852 444 DLEEL-----PEGI-KKLINMRHLLNDGTDTLRY-----MVVGIGRLTGLRTLGE 487 (731)
Q Consensus 444 ~l~~l-----p~~i-~~L~~L~~L~l~~~~~~~~-----~p~~i~~L~~L~~L~~ 487 (731)
+... ...+ ....+|++|++++|. ++. ++..+..+++|++|++
T Consensus 138 -l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~L 190 (372)
T 3un9_A 138 -LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSL 190 (372)
T ss_dssp -CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEEC
T ss_pred -CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeC
Confidence 4322 2222 246789999999983 322 3333344455555544
No 169
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=0.00018 Score=70.66 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=61.6
Q ss_pred hhccccccEEeecCCcccccc---ccccCCCceeEEeccCCcCcccCcccccCCC--CcceeeccCCcccccccc-----
Q 039852 405 IEKLVHLRYLNLSGQDIVQLS---ETLCELYILEKLDISYCMDLEELPEGIKKLI--NMRHLLNDGTDTLRYMVV----- 474 (731)
Q Consensus 405 i~~L~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~l~~c~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~----- 474 (731)
..++++|++|+|++|.+..++ ..+..+++|++|+|++ +.+..+ ..+..+. +|++|++++|.-...+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 367889999999999988654 6678999999999999 557665 3455555 999999999954443442
Q ss_pred --ccCCCCCCCccCceEe
Q 039852 475 --GIGRLTGLRTLGEFHV 490 (731)
Q Consensus 475 --~i~~L~~L~~L~~~~~ 490 (731)
-+..+++|+.|+...+
T Consensus 244 ~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp HHHHHHCTTCCEESSCBC
T ss_pred HHHHHHCcccCeECCcCC
Confidence 2456677777765433
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.27 E-value=0.0011 Score=69.87 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=44.3
Q ss_pred CCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccC
Q 039852 604 FGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKL 683 (731)
Q Consensus 604 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L 683 (731)
+..+.+|+.+.+.. .++.|+...+ ..+.+|+.+.|.+ +++.+.... |..+.+|+.+.+.. .+
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF-----~~c~~L~~i~lp~--~v~~I~~~a-------F~~c~~L~~i~lp~--~l 354 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAF-----ESCTSLVSIDLPY--LVEEIGKRS-------FRGCTSLSNINFPL--SL 354 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTT-----TTCTTCCEECCCT--TCCEECTTT-------TTTCTTCCEECCCT--TC
T ss_pred cccccccccccccc--ccceechhhh-----cCCCCCCEEEeCC--cccEEhHHh-------ccCCCCCCEEEECc--cc
Confidence 34466677776653 3566665443 3456666666643 234333222 22556677776643 35
Q ss_pred cCCC-CCCCCCCCccEEEEc
Q 039852 684 KALP-DYIHQTTTLKELRIL 702 (731)
Q Consensus 684 ~~lp-~~~~~l~~L~~L~l~ 702 (731)
+.++ ..+..+++|+.+++.
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEE
T ss_pred cEehHHHhhCCCCCCEEEEC
Confidence 5554 335566777777764
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.0008 Score=63.52 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 185 GERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
...+.+.+++..... ....+.+.|+|.+|+||||||+.+++. .......++|+++
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 344555566654322 112267889999999999999999984 3333345666654
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.00074 Score=69.14 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+++.++.+.+++..+. .+.+-++|..|+||||+|+.+++.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH
Confidence 3469999999999999887532 334889999999999999999984
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.96 E-value=0.001 Score=66.67 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=38.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+++|.++.++++.+.+...... +-...+-+-|+|..|+||||+|+.+++.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999998877431000 0013456889999999999999999984
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.89 E-value=0.0065 Score=63.93 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=62.4
Q ss_pred CCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccc
Q 039852 570 LRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLL 649 (731)
Q Consensus 570 l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~ 649 (731)
+..+.+|+.+.+... ... ++. ..+..+.+|+.+.|.. .++.|+...+ ..+.+|+.+.|..
T Consensus 293 F~~~~~L~~i~l~~~-i~~-I~~---------~aF~~c~~L~~i~lp~--~v~~I~~~aF-----~~c~~L~~i~lp~-- 352 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKF-IGE---------EAFESCTSLVSIDLPY--LVEEIGKRSF-----RGCTSLSNINFPL-- 352 (394)
T ss_dssp TTTCTTCCEEEECTT-CCE-ECT---------TTTTTCTTCCEECCCT--TCCEECTTTT-----TTCTTCCEECCCT--
T ss_pred ccccccccccccccc-cce-ech---------hhhcCCCCCCEEEeCC--cccEEhHHhc-----cCCCCCCEEEECc--
Confidence 345667777776532 111 222 1356788999998863 4778877654 4567888888754
Q ss_pred cccccccccccccccccccCcccceeeecccccCcCCCCCCCCCCCccEE
Q 039852 650 ELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQTTTLKEL 699 (731)
Q Consensus 650 ~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l~~L~~L 699 (731)
+++.+.... |..+++|+++.+.. .++.+...+.++++|+.+
T Consensus 353 ~l~~I~~~a-------F~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 SLRKIGANA-------FQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECTTT-------BTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred cccEehHHH-------hhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 245544333 23778899998864 345554456667777654
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.89 E-value=0.0015 Score=60.36 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 184 VGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
....+.+.+++..-.. ..-..+.|+|..|+||||||+.+++..
T Consensus 20 ~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555555543221 234689999999999999999999854
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.88 E-value=0.0013 Score=64.91 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCC------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSD------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+++.....+ +....+-|-|+|..|+|||++|+.+++.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357899988877776554321100 0123456779999999999999999983
No 177
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.58 E-value=0.00046 Score=64.14 Aligned_cols=63 Identities=21% Similarity=0.139 Sum_probs=45.5
Q ss_pred hhhhccccccEEeecCC-ccc-----cccccccCCCceeEEeccCCcCcc-----cCcccccCCCCcceeeccCC
Q 039852 403 RNIEKLVHLRYLNLSGQ-DIV-----QLSETLCELYILEKLDISYCMDLE-----ELPEGIKKLINMRHLLNDGT 466 (731)
Q Consensus 403 ~~i~~L~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~l~~c~~l~-----~lp~~i~~L~~L~~L~l~~~ 466 (731)
..+...+.|++|+|++| .+. .+...+....+|++|+|++|. +. .+...+...++|++|++++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 44566788999999998 765 355667777889999998865 42 23444556677888888877
No 178
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.56 E-value=0.00023 Score=69.87 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=51.4
Q ss_pred hhccccccE--EeecCCcccccccc----ccCCCceeEEeccCCcCccc---CcccccCCCCcceeeccCCccccccccc
Q 039852 405 IEKLVHLRY--LNLSGQDIVQLSET----LCELYILEKLDISYCMDLEE---LPEGIKKLINMRHLLNDGTDTLRYMVVG 475 (731)
Q Consensus 405 i~~L~~Lr~--L~L~~~~i~~lp~~----i~~L~~L~~L~l~~c~~l~~---lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 475 (731)
+.....|.. ++++.|....++.. ..++.+|++|+|++| .+.. +|..+..+++|++|+|++| .+..+ ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hh
Confidence 344444554 56667755544432 256889999999995 4554 4466779999999999998 44444 33
Q ss_pred cCCCC--CCCccCc
Q 039852 476 IGRLT--GLRTLGE 487 (731)
Q Consensus 476 i~~L~--~L~~L~~ 487 (731)
+..+. +|++|.+
T Consensus 214 l~~l~~l~L~~L~L 227 (267)
T 3rw6_A 214 LDKIKGLKLEELWL 227 (267)
T ss_dssp GGGGTTSCCSEEEC
T ss_pred hhhcccCCcceEEc
Confidence 44444 5555544
No 179
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.52 E-value=0.0016 Score=66.56 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|++..+..+..++...... ......|-|+|..|+||||+|+.+++.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 357999999988888877532100 112356789999999999999999983
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0025 Score=69.70 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=40.5
Q ss_pred CCccccchhHHHHHHHHHhcCC---------C--CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCES---------S--DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~---------~--~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|++..++++.+++.... . ++....+.+-|+|..|+||||+|+.+++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999987511 0 00123578999999999999999999984
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.47 E-value=0.01 Score=59.65 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcCC------CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCES------SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+.... .......+.+.|+|..|+||||+|+.+++.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3579999999999888764210 000113457889999999999999999983
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.44 E-value=0.0072 Score=59.92 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=34.0
Q ss_pred ccccchhHHHHHHH-------HHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLS-------KMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.....++++. .+.... ....+-+-|+|..|+|||++|+.+++.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56777777666665 232111 235678889999999999999999984
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.44 E-value=0.066 Score=56.12 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=59.1
Q ss_pred CCCCCCcceeeeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccC
Q 039852 604 FGKMPSLEKLHIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKL 683 (731)
Q Consensus 604 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L 683 (731)
+..+++|+.+.+. ..++.++...+ ..+.+|+.+.|.+ +++.+.... |..+.+|+++.|-. .+
T Consensus 284 F~~c~~L~~i~l~--~~i~~I~~~aF-----~~c~~L~~i~lp~--~v~~I~~~a-------F~~C~~L~~i~ip~--sv 345 (394)
T 4gt6_A 284 FMNCPALQDIEFS--SRITELPESVF-----AGCISLKSIDIPE--GITQILDDA-------FAGCEQLERIAIPS--SV 345 (394)
T ss_dssp TTTCTTCCEEECC--TTCCEECTTTT-----TTCTTCCEEECCT--TCCEECTTT-------TTTCTTCCEEEECT--TC
T ss_pred cccccccccccCC--CcccccCceee-----cCCCCcCEEEeCC--cccEehHhH-------hhCCCCCCEEEECc--cc
Confidence 4567788888875 34677776654 3567888888754 344444332 33688999999954 57
Q ss_pred cCCC-CCCCCCCCccEEEEccCchh
Q 039852 684 KALP-DYIHQTTTLKELRILMCGLL 707 (731)
Q Consensus 684 ~~lp-~~~~~l~~L~~L~l~~c~~L 707 (731)
+.++ ..+.++++|+.+++.+....
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CEEhHhHhhCCCCCCEEEECCceee
Confidence 7776 34678999999999876543
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.41 E-value=0.006 Score=64.96 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=36.1
Q ss_pred CCccccchhHH---HHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGER---NELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.+..+ ..+...+..+ ....+-++|..|+||||+|+.+.+.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 35688888777 5666666532 3567899999999999999999983
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.41 E-value=0.0087 Score=61.90 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcC---CC---CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCE---SS---DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+... .. ......+-|-|+|..|+|||++|+.+++.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999888876420 00 00123567889999999999999999883
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.40 E-value=0.0039 Score=64.08 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|++..++.+..++...... ......|-|+|..|+|||++|+.+.+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999988888653110 113456789999999999999999873
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.32 E-value=0.015 Score=60.48 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNE---LLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|++..++. +.+.+..... ..+.+-|+|..|+|||++|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999988765 4555543322 2368889999999999999999984
No 188
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.29 E-value=0.0058 Score=71.19 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||++++..+++.|.... ..-+.++|.+|+||||+|+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987532 234678999999999999999984
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.27 E-value=0.0083 Score=60.71 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHhcCC---------CCCCCCcEEEeeeccCcchHHHHHHHHHcch
Q 039852 179 EICGRVGERNELLSKMLCES---------SDQQKGLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
+++|.+..++.+.+.+.... -.......-+-|+|..|+|||++|+.+++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 47888888877776554210 0001245578899999999999999888743
No 190
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.26 E-value=0.0034 Score=63.88 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|++..++.+.+++..+ ..+.+-++|..|+||||+|+.+++.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 46899999999998888643 2233889999999999999999884
No 191
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.26 E-value=0.0016 Score=64.90 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=43.5
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe--CCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV--SETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
-+++-|+|++|+||||||.++... .-..++|+++ ....+. . . .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~--~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y--N-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C--B-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h--h-cCHHHHHHHHHHHHh
Confidence 457789999999999999999874 1123456666 332110 0 0 233444455555565
Q ss_pred CCceEEEehhhH
Q 039852 283 GKRFLLVLDDVM 294 (731)
Q Consensus 283 ~kr~llvlDdvw 294 (731)
..+ +||+|++-
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 555 99999984
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.25 E-value=0.0096 Score=60.70 Aligned_cols=47 Identities=23% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.+..++.+.+++..+. ...++-+.|..|+||||+|+.+.+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 4579999999999999998433 2357788899999999999999884
No 193
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.25 E-value=0.017 Score=55.00 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=52.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccC------------CCCChhhHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTG------------STSNLDALQ 271 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~------------~~~~~~~~~ 271 (731)
.-.++.|+|.+|+||||||..+.. . .-..++|++....++...+.. +....+. .........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345999999999999999999987 1 124678888777667665543 3322211 111122223
Q ss_pred HHHHHHHHHhCCCceEEEehhh
Q 039852 272 SLLISIDESIAGKRFLLVLDDV 293 (731)
Q Consensus 272 ~~~~~l~~~l~~kr~llvlDdv 293 (731)
+....++..+..+.-++|+|.+
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECC
T ss_pred HHHHHHHHHhhcCCCEEEEcCc
Confidence 3444555555444668899986
No 194
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.23 E-value=0.0087 Score=60.95 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhcC------CCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCE------SSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.++.++.+.+.+... -.......+-|-++|..|+|||++|+++++.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999988877210 0001223467889999999999999999984
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.21 E-value=0.012 Score=59.25 Aligned_cols=52 Identities=25% Similarity=0.178 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHHHhcCC--C-----CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCES--S-----DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~--~-----~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.++.++++.+.+...- + -+-...+.|.++|..|+||||||+.+++.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3469999988888887764210 0 00123467899999999999999999984
No 196
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0062 Score=62.95 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+++.++.+..++..... ..+.++|..|+||||+|+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL------PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC------CCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC------CEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999998874432 22889999999999999999985
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.19 E-value=0.0027 Score=56.17 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+++|+...+.++.+.+..-.. ... -|-|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~~-~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TDI-AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CCS-CEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCC-CEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999888764332 122 3579999999999999999984
No 198
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.17 E-value=0.022 Score=57.90 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=37.6
Q ss_pred CCccccchhHHHHHHHHHhc---CC---CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLC---ES---SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~---~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.++.++.+.+.+.. .. .......+-|-++|..|+|||+||+++++.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 45789999888888776531 00 000123467889999999999999999984
No 199
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.11 E-value=0.012 Score=57.72 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCccccchhHHHHHHHHH---hcCCCC---CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKM---LCESSD---QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.+..++++.+.+ .....- +....+-|.|+|..|+||||+|+.+++.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899887777665543 221100 0011234789999999999999999984
No 200
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.96 E-value=0.021 Score=65.66 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+.+++.+++.|.... ..-+-++|..|+||||+|+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987432 334579999999999999999874
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.92 E-value=0.019 Score=61.11 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=43.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccc--eEEEEEeCCCCCHHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFH--KILWACVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 282 (731)
..-+.|+|..|+||||||+.+++. ....|. .+++++. ..+..++...+.... ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~~---------~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGK---------LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTTC---------HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHccc---------HHHHHHHhc
Confidence 567899999999999999999984 433332 2444433 233444444332211 112333344
Q ss_pred CCceEEEehhhH
Q 039852 283 GKRFLLVLDDVM 294 (731)
Q Consensus 283 ~kr~llvlDdvw 294 (731)
.+.-+|++||+.
T Consensus 193 ~~~~vL~IDEi~ 204 (440)
T 2z4s_A 193 KKVDILLIDDVQ 204 (440)
T ss_dssp TTCSEEEEECGG
T ss_pred CCCCEEEEeCcc
Confidence 356788899985
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.91 E-value=0.011 Score=59.82 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.7
Q ss_pred ccccchhHHHHHHHHHhcCC---CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCES---SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.+..++.+...+.... .........+.++|..|+||||+|+.+++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 47888888888887776431 111223568999999999999999999983
No 203
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.91 E-value=0.004 Score=55.30 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=27.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
..+.|+|..|+|||||++.+++..... .+ ..+++....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 488999999999999999999853321 11 255565443
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.90 E-value=0.0018 Score=60.15 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=59.6
Q ss_pred hhhhhhhcc-CCcHHHHHHHHHhhcccCCCcCCccchhhhhccccccEEeecCCcccc-----ccccccCCCceeEEecc
Q 039852 367 LTPLRLSYN-DLPSRVKRCFSYCAIFVNRSSLTPKIPRNIEKLVHLRYLNLSGQDIVQ-----LSETLCELYILEKLDIS 440 (731)
Q Consensus 367 ~~~L~lsy~-~L~~~~k~cf~~~~~f~~rs~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~ 440 (731)
+..|.++++ .+...--. .+...+....+|++|+|++|.+.. +...+.....|++|+|+
T Consensus 38 L~~L~L~~n~~i~~~g~~----------------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLK----------------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp CCEEECTTCTTCCHHHHH----------------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCEEEecCCCCCCHHHHH----------------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 445677777 77663211 234456667899999999999763 45566677899999999
Q ss_pred CCcCccc-----CcccccCCCCcceeec--cCC
Q 039852 441 YCMDLEE-----LPEGIKKLINMRHLLN--DGT 466 (731)
Q Consensus 441 ~c~~l~~-----lp~~i~~L~~L~~L~l--~~~ 466 (731)
+|. +.. +...+...++|++|++ ++|
T Consensus 102 ~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 102 SNF-ISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp SSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred CCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 965 432 5566777888999999 666
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.86 E-value=0.017 Score=60.62 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcCCC------CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESS------DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+..... ......+-|-|+|..|+|||++|+.+++.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45799999999998887732100 00112457889999999999999999873
No 206
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.73 E-value=0.07 Score=55.93 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=71.7
Q ss_pred cccccccCCceEEEEecCCCCcccCCcccHHHHhhcCCCCCCCceEEEeeecCCCCCccchhhcccCCCCCCCCCCccee
Q 039852 534 ELDKKKYLSYLRLEFDKKKEGEETRKNEDDQLLLEALRPPLDLKKLEIRYYRGNTVFRSLLVQKLRAAASFGKMPSLEKL 613 (731)
Q Consensus 534 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~~L~~l~~l~~l~~L~~L 613 (731)
.+.++.+|+.+.+..+.. ...-..+..+++|+.+.+... ... ++.. .+..+.+|+.+
T Consensus 260 aF~~c~~L~~i~lp~~~~------------~I~~~aF~~c~~L~~i~l~~~-i~~-I~~~---------aF~~c~~L~~i 316 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV------------SIGTGAFMNCPALQDIEFSSR-ITE-LPES---------VFAGCISLKSI 316 (394)
T ss_dssp TTTTCSSCCEEECCTTCC------------EECTTTTTTCTTCCEEECCTT-CCE-ECTT---------TTTTCTTCCEE
T ss_pred eeeecccccEEecccccc------------eecCcccccccccccccCCCc-ccc-cCce---------eecCCCCcCEE
Confidence 456677788777643211 001123456678888877521 111 3331 46778899999
Q ss_pred eeccccCceEeCcccccccccccCcccceeeccccccccccccccccccccccccCcccceeeecccccCcCCCCCCCCC
Q 039852 614 HIWGMKRVKKVGDEFLGVEIIIAFPKLKSLLIEDLLELEEWDYGITRTGNTVIDIMPRLSSFEIKWCPKLKALPDYIHQT 693 (731)
Q Consensus 614 ~L~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~l 693 (731)
.|.. .++.|+...+ ..+.+|+.+.|.. +++.+.... |..+++|+.+.+.+.... + ..+...
T Consensus 317 ~lp~--~v~~I~~~aF-----~~C~~L~~i~ip~--sv~~I~~~a-------F~~C~~L~~i~~~~~~~~--~-~~~~~~ 377 (394)
T 4gt6_A 317 DIPE--GITQILDDAF-----AGCEQLERIAIPS--SVTKIPESA-------FSNCTALNNIEYSGSRSQ--W-NAISTD 377 (394)
T ss_dssp ECCT--TCCEECTTTT-----TTCTTCCEEEECT--TCCBCCGGG-------GTTCTTCCEEEESSCHHH--H-HTCBCC
T ss_pred EeCC--cccEehHhHh-----hCCCCCCEEEECc--ccCEEhHhH-------hhCCCCCCEEEECCceee--h-hhhhcc
Confidence 9964 4788887655 4678889888854 345444333 237889999988764221 1 123345
Q ss_pred CCccEEEEc
Q 039852 694 TTLKELRIL 702 (731)
Q Consensus 694 ~~L~~L~l~ 702 (731)
.+|+.+.+.
T Consensus 378 ~~L~~i~i~ 386 (394)
T 4gt6_A 378 SGLQNLPVA 386 (394)
T ss_dssp CCC------
T ss_pred CCCCEEEeC
Confidence 566666553
No 207
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.71 E-value=0.035 Score=56.49 Aligned_cols=24 Identities=46% Similarity=0.472 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+.|+|..|+||||||+.+++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999999984
No 208
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.61 E-value=0.015 Score=60.01 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHHHHhcC---C---CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCE---S---SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+... . .......+-|-++|..|+|||+||+++++.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999888876311 0 000122345789999999999999999984
No 209
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.58 E-value=0.017 Score=55.70 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=38.3
Q ss_pred Cccccc---hhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 178 EEICGR---VGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 178 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
++++|. +...+.+..+... ...+.+.|+|..|+||||+|+.+++. .......+.|+..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHH
Confidence 356653 2445555555542 13467889999999999999999984 332234456666544
No 210
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.56 E-value=0.0084 Score=64.48 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=37.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+.+++.++..|.... ..-+-++|.+|+|||++|+.+++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997532 223468999999999999999984
No 211
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.51 E-value=0.042 Score=53.06 Aligned_cols=90 Identities=21% Similarity=0.187 Sum_probs=53.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhc----ccceEEEEEeCCCCCHHHHHHHHHHHccCCC------------CCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKR----EFHKILWACVSETFDEFRIAKAMLEALTGST------------SNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------~~~ 267 (731)
.-.++.|+|..|+|||||+..+........ .-..++|+.....++...+. +++..++... ...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 345999999999999999999887422211 12468888887766665543 2333333211 111
Q ss_pred hhHHHHHHHHHHHhC-CCceEEEehhhH
Q 039852 268 DALQSLLISIDESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~-~kr~llvlDdvw 294 (731)
.........+.+.+. .+.-++|+|++-
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 222223333444443 466788999874
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.40 E-value=0.0035 Score=55.27 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=33.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+...+.++.+.+..-.. ... -|-|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~---~~~-~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK---RTS-PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT---CSS-CEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC---CCC-cEEEECCCCccHHHHHHHHHHh
Confidence 3688999888888887754221 122 3669999999999999999984
No 213
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.39 E-value=0.014 Score=54.70 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 183 RVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
|++.++++.+.+..... ....+|+|+|..|.||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567778877775432 3567999999999999999999887
No 214
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.38 E-value=0.047 Score=58.27 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=54.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCC------CCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHH
Q 039852 177 EEEICGRVGERNELLSKMLCESSD------QQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEF 250 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 250 (731)
-.+++|.++.++++.+.+..-..+ +..-.+-|.++|..|.||||||+.+++.. ... .+.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH-
Confidence 357999988777766554321100 00112337799999999999999999842 222 233433322110
Q ss_pred HHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCCceEEEehhhH
Q 039852 251 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 251 ~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~llvlDdvw 294 (731)
. ...........+.....+...+|++|++.
T Consensus 89 -------------~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 89 -------------F-VGVGAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp -------------C-TTHHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred -------------H-hcccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 0 00111222233444445678899999985
No 215
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.38 E-value=0.04 Score=58.74 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcC----C--CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCE----S--SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+... . .......+-|-++|..|+|||+||+.+++.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999988888776310 0 000123467889999999999999999984
No 216
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.25 E-value=0.013 Score=61.04 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|++..++.+...+..+. ....+-|+|..|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999987543 2347889999999999999999874
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.14 E-value=0.041 Score=59.12 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCC-C------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESS-D------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~-~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..++++.+++..... + +....+-|-|+|..|.|||++|+++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999998887753200 0 0012345889999999999999999883
No 218
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.09 E-value=0.064 Score=54.44 Aligned_cols=90 Identities=27% Similarity=0.261 Sum_probs=57.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcc----cceEEEEEeCCCCCHHHHHHHHHHHccCCC------------CCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKRE----FHKILWACVSETFDEFRIAKAMLEALTGST------------SNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------~~~ 267 (731)
.-.++.|+|..|+||||||..+..+...... -..++|++....++...+.. ++..++... ...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999998864322211 24689999988888777654 344443221 111
Q ss_pred hhHHHHHHHHHHHhC--CCceEEEehhhH
Q 039852 268 DALQSLLISIDESIA--GKRFLLVLDDVM 294 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~--~kr~llvlDdvw 294 (731)
....++...+...++ .+--+||+|.+-
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 222234445555554 456689999985
No 219
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.08 E-value=0.08 Score=54.19 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=56.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhc----ccceEEEEEeCCCCCHHHHHHHHHHHccCCC------------CCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKR----EFHKILWACVSETFDEFRIAKAMLEALTGST------------SNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------~~~ 267 (731)
.-.++-|+|..|+||||||..+........ .-..++|++....++...+.. ++..++... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999999887432211 224688999988888776654 333433211 112
Q ss_pred hhHHHHHHHHHHHhC---CCceEEEehhhH
Q 039852 268 DALQSLLISIDESIA---GKRFLLVLDDVM 294 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~---~kr~llvlDdvw 294 (731)
.....+...+.+.+. .+--+||+|.+-
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 222233334444443 455689999985
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.07 E-value=0.044 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++|+++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998874
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.02 E-value=0.046 Score=55.81 Aligned_cols=84 Identities=26% Similarity=0.209 Sum_probs=53.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCC-----CChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGST-----SNLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~-----~~~~~~~~~~~~l~ 278 (731)
.-.++.|+|..|+||||||..+...... .=..++|++....++.. .+..++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999874332 22357888888877754 333333221 11223444444455
Q ss_pred HHhC-CCceEEEehhhH
Q 039852 279 ESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~-~kr~llvlDdvw 294 (731)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 4443 455588889874
No 222
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.064 Score=55.42 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=37.3
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCC-----CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCE--SSD-----QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~--~~~-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-+++.|.++.+++|.+.+.-. .++ +-...+=|-++|++|.|||+||+++++.
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3457899998888777654320 000 1123466789999999999999999993
No 223
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.98 E-value=0.13 Score=53.34 Aligned_cols=58 Identities=5% Similarity=0.140 Sum_probs=30.9
Q ss_pred hhhccccccEEeecCCcccccccc-ccCCCceeEEeccCCcCcccCcccccCCCCcceeeccC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSET-LCELYILEKLDISYCMDLEELPEGIKKLINMRHLLNDG 465 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~i~~L~~L~~L~l~~ 465 (731)
.|.++.+|+.+.|..+ ++.++.. +.++ +|+.+.+.. .+..++.......+|+.+.+..
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEECCT
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccCCC
Confidence 4666777777777543 5555543 4443 455555433 2444444432334666666654
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.086 Score=55.34 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=38.3
Q ss_pred cCCCccccchhHHHHHHHHHhcC--CCC-----CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 175 IDEEEICGRVGERNELLSKMLCE--SSD-----QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 175 ~~~~~~vGr~~~~~~l~~~L~~~--~~~-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.-+++.|.++.+++|.+.+.-. .++ +-...+=|-++|++|.|||+||+++++.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33457899988888777655320 000 1224577889999999999999999994
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.04 Score=57.71 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=38.6
Q ss_pred cCCCccccchhHHHHHHHHHhcC--CC-----CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 175 IDEEEICGRVGERNELLSKMLCE--SS-----DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 175 ~~~~~~vGr~~~~~~l~~~L~~~--~~-----~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..-+++.|.++.+++|.+.+.-. .+ -+-...+=|-++|++|.|||+||+++++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34457899998888887765320 00 01224566889999999999999999994
No 226
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.90 E-value=0.04 Score=63.37 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=38.4
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCC-----CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLCE--SSD-----QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~~--~~~-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++++|.+..++++.+++... .+. +-..-.-|.|+|..|+||||||+.+.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999888888877530 000 0123456899999999999999999883
No 227
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.89 E-value=0.062 Score=54.55 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=56.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhc---------cc-----ceEEEEEeCCCCCHHHHHHHHHHHccCCC-----
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKR---------EF-----HKILWACVSETFDEFRIAKAMLEALTGST----- 264 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~~~~~~----- 264 (731)
.-.++-|+|..|+||||+|..+..+..... .. ..++|++....++...+... +..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 457999999999999999998876432211 11 46889999888888776643 34443211
Q ss_pred -------CChhhHHHHHHHHHHHhCC--CceEEEehhhH
Q 039852 265 -------SNLDALQSLLISIDESIAG--KRFLLVLDDVM 294 (731)
Q Consensus 265 -------~~~~~~~~~~~~l~~~l~~--kr~llvlDdvw 294 (731)
........+...+.+.++. +--+||+|.+-
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1112222344455555543 44588999884
No 228
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.04 Score=57.81 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHHHHhc----CCC---CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLC----ESS---DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-+++.|.++.+++|.+.+.- .+- -+-...+=|-++|++|.|||+||+++++.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 34789999888888765421 000 00134667889999999999999999993
No 229
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.86 E-value=0.06 Score=56.68 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=50.3
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHHcc--------CCCCChhhH----HHH
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEALT--------GSTSNLDAL----QSL 273 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~--------~~~~~~~~~----~~~ 273 (731)
.++|+|..|+|||||++.+..+.... .-+.++++-+.+..+ ..++.+++...-. ....+.... ...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 58999999999999999998853332 224456677776653 3455555543200 011111111 101
Q ss_pred HHHHHHH---hCCCceEEEehhhH
Q 039852 274 LISIDES---IAGKRFLLVLDDVM 294 (731)
Q Consensus 274 ~~~l~~~---l~~kr~llvlDdvw 294 (731)
...+.++ .+++++|+++||+-
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 1122232 36899999999984
No 230
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.84 E-value=0.063 Score=55.24 Aligned_cols=84 Identities=23% Similarity=0.152 Sum_probs=54.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCC-----ChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTS-----NLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 278 (731)
.-+++-|.|.+|+||||||..+...... .-..++|++....++... +..++.... ...+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3458888999999999999888774332 224789999988877542 333332210 1124455555666
Q ss_pred HHhC-CCceEEEehhhH
Q 039852 279 ESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~-~kr~llvlDdvw 294 (731)
...+ +.--+||+|.+-
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 344589999983
No 231
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.84 E-value=0.044 Score=56.20 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=52.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCC-----ChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTS-----NLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 278 (731)
.-+++-|.|.+|+||||||.++....... -..++|++....++... +..++.... ...+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45689999999999999999888743322 23688999988887542 333332210 1122344444444
Q ss_pred HHhC-CCceEEEehhhH
Q 039852 279 ESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~-~kr~llvlDdvw 294 (731)
...+ .+--+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4332 444588999974
No 232
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.79 E-value=0.07 Score=53.67 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=30.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 182 GRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
|.......+...+..... .....+|+|.|..|+||||+|+.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 333444444444444332 34678999999999999999999876
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.78 E-value=0.024 Score=55.86 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=33.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++|....+.++.+.+..... .-.-|-|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4588999998888877754332 1235679999999999999999984
No 234
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.76 E-value=0.021 Score=58.23 Aligned_cols=55 Identities=16% Similarity=0.050 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhh-cccceEEEEEeCCCCC
Q 039852 188 NELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVK-REFHKILWACVSETFD 248 (731)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~ 248 (731)
-++++.+..-. .-..++|+|..|+|||||++.+.+....+ ..++ ++++-+.+...
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~ 217 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE 217 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH
Confidence 35566665432 23589999999999999999988743221 1233 34566776653
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.56 E-value=0.024 Score=53.42 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 186 ERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.++|.+.+... .+.-.+|+|+|..|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555432 135679999999999999999999873
No 236
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.044 Score=57.47 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=38.3
Q ss_pred CCCccccchhHHHHHHHHHhc----CCC---CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 176 DEEEICGRVGERNELLSKMLC----ESS---DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-+++.|.++.+++|.+.+.. .+- -+-...+=|-++|++|.|||+||+++++.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 345789999988888765431 100 01234567889999999999999999994
No 237
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.51 E-value=0.025 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988873
No 238
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.48 E-value=0.029 Score=56.82 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 181 CGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
|+.+.-.+++++.+...-. ......|.|+|+.|.||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4445566677776643322 235667999999999999999999883
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.47 E-value=0.094 Score=59.46 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred CCCccccchhHHHHHHHHHhc----CCC---CCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC
Q 039852 176 DEEEICGRVGERNELLSKMLC----ESS---DQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD 248 (731)
Q Consensus 176 ~~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (731)
.-+++.|.++.+++|.+.+.- ..- -+-...+-|-++|..|.|||+||++|++. ...+| +.|+.+
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~---- 272 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP---- 272 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH----
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH----
Confidence 345688988888777765431 110 01234567889999999999999999994 33332 233221
Q ss_pred HHHHHHHHHHHccCCCCChhhHHHHHHHHHHHhCCCceEEEehhhH
Q 039852 249 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 249 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~llvlDdvw 294 (731)
+ ++. .. .......+...+.........+|++|++.
T Consensus 273 --~----l~s----k~-~gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 273 --E----IMS----KL-AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp --H----HHS----SC-TTHHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred --H----hhc----cc-chHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 1 111 11 11222223333444455678899999986
No 240
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.46 E-value=0.016 Score=52.76 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=18.8
Q ss_pred EEEeeeccCcchHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLA 225 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v 225 (731)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 241
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.38 E-value=0.023 Score=58.15 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=35.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++++|.+..++.+-..+...... +.....+.++|..|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45788877777666555432100 123467899999999999999999984
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.36 E-value=0.19 Score=47.93 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=30.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKA 255 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 255 (731)
-.++.|+|..|+|||||++.+....... =..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 3589999999999999999998643221 12455655433 44444443
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.31 E-value=0.019 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=20.4
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.30 E-value=0.028 Score=64.62 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++||+.+++.++..|.... ..-+-++|.+|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997532 223579999999999999999884
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.29 E-value=0.021 Score=52.96 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|+|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999884
No 246
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.24 E-value=0.37 Score=50.51 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+||.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888863
No 247
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.02 Score=53.57 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++|.|+|+.|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 248
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.19 E-value=0.023 Score=57.24 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.5
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++.|||+|.|-|||||||.|-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999877665
No 249
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.18 E-value=0.024 Score=58.49 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=34.8
Q ss_pred CccccchhHHHHHHHHH-hcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKM-LCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|.+..++.+.+++ ..+. ... +.|+|..|+||||+|+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHH
Confidence 46899998888888877 3221 123 89999999999999998877
No 250
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.16 E-value=0.021 Score=52.51 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=21.5
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.14 E-value=0.021 Score=52.23 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|.|+|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.13 E-value=0.11 Score=53.24 Aligned_cols=84 Identities=23% Similarity=0.173 Sum_probs=53.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCC-----ChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTS-----NLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 278 (731)
.-+++.|+|.+|+||||||.++...... .=..++|++....++.. .+..++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4568999999999999999998874332 22468899988877754 2333432210 1123444445555
Q ss_pred HHhC-CCceEEEehhhH
Q 039852 279 ESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~-~kr~llvlDdvw 294 (731)
...+ .+--+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4444 345689999984
No 253
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.09 E-value=0.21 Score=51.07 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=53.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhccc----ceEEEEEeCCCCCHHHHHHHHHHHccCC------------CCCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREF----HKILWACVSETFDEFRIAKAMLEALTGS------------TSNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~~~~~------------~~~~ 267 (731)
.-.++.|+|..|+|||||+..+.......... ..++|++....+....+. .+++..... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~-~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIR-EIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHH-HHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHH-HHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999988743211111 245888877766554432 233332211 0112
Q ss_pred hhHHHHHHHHHHHhC------CCceEEEehhhH
Q 039852 268 DALQSLLISIDESIA------GKRFLLVLDDVM 294 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~------~kr~llvlDdvw 294 (731)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 223334444555553 356688899874
No 254
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.08 E-value=0.028 Score=56.56 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+...+.++.+.+..-.. .-.-|-|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4689999999998888765432 2234669999999999999999984
No 255
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.05 E-value=0.3 Score=51.44 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 187 RNELLSKMLCESSD---QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 187 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++.++|.....+ .....++|.++|.+|+||||++..+...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666533211 1235789999999999999999988874
No 256
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.04 E-value=0.15 Score=50.53 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=52.7
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCC-----ChhhHHHH-HHHHHHH
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTS-----NLDALQSL-LISIDES 280 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~-----~~~~~~~~-~~~l~~~ 280 (731)
++-|.|..|+||||||.++......+..=..++|++....++.. .++.++.... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999998887643322112468999988888864 2555654321 11234443 3333222
Q ss_pred --h-CCCceEEEehhhH
Q 039852 281 --I-AGKRFLLVLDDVM 294 (731)
Q Consensus 281 --l-~~kr~llvlDdvw 294 (731)
+ +++.-++|+|-|-
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 3 3566799999874
No 257
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.94 E-value=0.027 Score=56.78 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=36.8
Q ss_pred CccccchhHHHHHHHHHhcC--CCC------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCE--SSD------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.+..++.+...+... ... ......-+-++|..|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999888877541 000 0012345779999999999999999983
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.91 E-value=0.028 Score=51.48 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 259
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.097 Score=54.32 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=38.2
Q ss_pred cCCCccccchhHHHHHHHHHhc---CCC----CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 175 IDEEEICGRVGERNELLSKMLC---ESS----DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 175 ~~~~~~vGr~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.-+++.|.++.+++|.+.+.- ... -+-...+=|-++|++|.|||+||+++++.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3345788999888887765532 100 01234567889999999999999999994
No 260
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.83 E-value=0.05 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999883
No 261
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.82 E-value=0.069 Score=45.87 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=41.5
Q ss_pred cEEeecCCccc--cccccccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCC
Q 039852 412 RYLNLSGQDIV--QLSETLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGT 466 (731)
Q Consensus 412 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~ 466 (731)
.+++.+++.++ .+|..+. .+|++|+|++ +.+..+|.+ |..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 46788888888 8887654 4688999998 568888776 577889999999887
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.79 E-value=0.022 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 263
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.75 E-value=0.042 Score=56.31 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=35.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..++.+...+..+. +.-+.++|..|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence 457898888888888886432 223889999999999999999884
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.75 E-value=0.034 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|.|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999884
No 265
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.73 E-value=0.034 Score=54.74 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=35.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCC------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSD------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.+..++.+.+.+..-..+ +....+-+-|+|..|+|||++|+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 357899988877777655410000 0011223779999999999999999984
No 266
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.69 E-value=0.05 Score=55.50 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=35.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++|+++.++.+...+..+ .-+-++|..|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 36889999998888887642 2477899999999999999988
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.66 E-value=0.029 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 268
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.66 E-value=0.059 Score=52.52 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 185 GERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+++++.+...... .....+|.|+|+.|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555555544332 34567999999999999999999987
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.56 E-value=0.23 Score=49.64 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.|+|.+|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 5689999999999999999998874
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.54 E-value=0.062 Score=53.43 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 185 GERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...++++..++..... .....+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~l~~~~~-~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKA-VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHTTCCC-CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccC-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555555543321 33467899999999999999999976
No 271
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.54 E-value=0.032 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.1
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999987
No 272
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.51 E-value=0.036 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+|.|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999887
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.50 E-value=0.35 Score=50.73 Aligned_cols=25 Identities=40% Similarity=0.391 Sum_probs=22.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+||.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988874
No 274
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.50 E-value=0.15 Score=50.22 Aligned_cols=49 Identities=27% Similarity=0.286 Sum_probs=30.7
Q ss_pred CccccchhHHHHHHHHHhc---------CCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLC---------ESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++.|.++.++++.+.+.. .-+ -..... +.++|..|.||||||+.+.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~-l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALG-LVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTT-CCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 4567777666666554321 000 001122 899999999999999999984
No 275
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.46 E-value=0.24 Score=49.55 Aligned_cols=41 Identities=12% Similarity=-0.112 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 182 GRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
|-++.++.+.+.+..+ +.+..-++|..|.||||+|+.+.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3455666677776532 3568889999999999999999873
No 276
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.39 E-value=0.036 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999883
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.39 E-value=0.039 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997654
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.37 E-value=0.041 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|+|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 279
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.35 E-value=0.043 Score=51.59 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=22.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+|+|+|..|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998873
No 280
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.34 E-value=0.06 Score=55.71 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHHHHhc-------CC--CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLC-------ES--SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.+..++.+...+.. .. .......+.|.++|..|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478888888888877720 00 000113456889999999999999999984
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.33 E-value=0.035 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|+|+|+.|+||||+++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3469999999999999999999873
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.31 E-value=0.028 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.30 E-value=0.041 Score=51.44 Aligned_cols=25 Identities=44% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.30 E-value=0.037 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999873
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.29 E-value=0.04 Score=51.99 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|+|+|..|.|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.28 E-value=0.032 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999873
No 287
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.26 E-value=0.53 Score=50.45 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 187 RNELLSKMLCESSD---QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 187 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++.+.+.....+ .....++|.|+|.+|+||||++..+...
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555432211 1145789999999999999999998863
No 288
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.23 E-value=0.37 Score=48.51 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=36.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEA 259 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 259 (731)
.-.++-|.|.+|+||||+|..+..+...++ ..++|++.- .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999887543333 567776654 5566666665543
No 289
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.17 E-value=0.45 Score=48.01 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.-.+|+|+|..|+||||+++.+..-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.17 E-value=0.048 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 291
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.13 E-value=0.04 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 292
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.13 E-value=0.19 Score=52.96 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=40.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEA 259 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~ 259 (731)
.-++|+|..|+|||+|++.+.++. .+.+-+.++++-+.+... ..++.+++...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 468999999999999999988842 223457888888888875 45667776653
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.12 E-value=0.039 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 294
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.10 E-value=0.043 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 58999999999999999999873
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.09 E-value=0.038 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 296
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.07 E-value=0.29 Score=51.48 Aligned_cols=65 Identities=23% Similarity=0.210 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHHHHHH
Q 039852 189 ELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKAMLEA 259 (731)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~ 259 (731)
++++.|..-. +=..++|+|..|+|||+|++.+.++.. +.+-+.++++-+.+... +.++.+++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4556665322 234789999999999999999887421 23446678888888764 35666777654
No 297
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.05 E-value=0.44 Score=49.51 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=51.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhh----cccceEEEEEeCCCCCHHHHHHHHHHHccCCC------------CCh
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVK----REFHKILWACVSETFDEFRIAKAMLEALTGST------------SNL 267 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------~~~ 267 (731)
.-.++.|+|..|+|||||+..++-..... ..-..++|++....++...+.. +++.++... ...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcCCChHhHhhcEEEeccCCh
Confidence 34699999999999999999765321111 1234588888877777665432 444443211 111
Q ss_pred hhHHHHHHHHHHHhC-CCceEEEehhhH
Q 039852 268 DALQSLLISIDESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 268 ~~~~~~~~~l~~~l~-~kr~llvlDdvw 294 (731)
.........+.+.+. .+--+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 122222233333332 456688889874
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.04 E-value=0.045 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 299
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.03 E-value=0.04 Score=49.94 Aligned_cols=24 Identities=42% Similarity=0.386 Sum_probs=21.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++++|+|..|.|||||++.+..-
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998874
No 300
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.00 E-value=0.035 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346788999999999999999986
No 301
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.99 E-value=0.082 Score=56.56 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=35.2
Q ss_pred CCccccchhHHHHHH---HHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELL---SKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~---~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+++|.++.++.+. +++..+.. ..+-+-++|+.|+|||++|+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~----~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKM----AGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCcCCHHHHHHHHHHH
Confidence 367999998877544 44433221 2345779999999999999999984
No 302
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.98 E-value=0.06 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 303
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.98 E-value=0.046 Score=49.99 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEeeeccCcchHHHHHHHHHcch
Q 039852 207 IISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
.++|+|..|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 304
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.97 E-value=0.042 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.96 E-value=0.051 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.95 E-value=0.055 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 307
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.95 E-value=0.28 Score=45.47 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=47.2
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCC-----hhhHHHHHHHHHHHh
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSN-----LDALQSLLISIDESI 281 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~-----~~~~~~~~~~l~~~l 281 (731)
.|.|=|.-|+||||.++.+++ ..+..-..+++..-.......+..+.++..-...... ..+..+....+...+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999998 4444333444444444444455555555432211100 122233445566666
Q ss_pred CCCceEEEehhhH
Q 039852 282 AGKRFLLVLDDVM 294 (731)
Q Consensus 282 ~~kr~llvlDdvw 294 (731)
...+ .+|.|--+
T Consensus 80 ~~g~-~Vi~DRy~ 91 (197)
T 3hjn_A 80 SEGY-AVLLDRYT 91 (197)
T ss_dssp TTTC-EEEEESCH
T ss_pred HCCC-eEEecccc
Confidence 6544 45566643
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.93 E-value=0.036 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++|.|+|+.|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999873
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.91 E-value=0.038 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 310
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.91 E-value=0.072 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998874
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.85 E-value=0.046 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999977
No 312
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.84 E-value=0.062 Score=52.39 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=32.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.++.+.++.+....-... -.-... +.|+|..|+||||||+.+++.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 346888876666554433211000 000122 899999999999999999984
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.83 E-value=0.038 Score=50.34 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|.|+|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 314
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.80 E-value=0.053 Score=52.83 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999877
No 315
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.75 E-value=0.41 Score=50.76 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=29.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDE 249 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 249 (731)
.-.+|+|+|..|+|||||++.+..-.. .. ...+++.-.+.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~--~~-~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE--QQ-GKSVMLAAGDTFRA 334 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH--HT-TCCEEEECCCTTCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh--hc-CCeEEEecCcccch
Confidence 457999999999999999999987332 21 23444444445543
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.73 E-value=0.054 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.72 E-value=0.34 Score=50.70 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998874
No 318
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.68 E-value=0.072 Score=57.26 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=34.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.++.++.+...+..+ .-|-++|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789888888888777632 25779999999999999999984
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.63 E-value=0.061 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999999887
No 320
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.62 E-value=0.066 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+.++|.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998874
No 321
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.61 E-value=0.065 Score=49.63 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999887
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.61 E-value=0.057 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.59 E-value=0.054 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|.|.|+.|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.57 E-value=0.054 Score=50.18 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=22.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-++|.|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999863
No 325
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.48 E-value=0.062 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+|.|+|+.|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999873
No 326
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.47 E-value=0.12 Score=60.07 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=38.1
Q ss_pred ccccchhHHHHHHHHHhcCC---CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKMLCES---SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.+..++.+...+.... .+.+.....+-|+|..|+|||++|+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 57999998888887775431 111234568899999999999999999983
No 327
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.45 E-value=0.04 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|+|+|..|+||||+|+.+...
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999873
No 328
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.41 E-value=0.059 Score=50.67 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.5
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 459999999999999999999873
No 329
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.41 E-value=3 Score=44.24 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=34.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAML 257 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 257 (731)
.-.++.|.|.+|+||||+|..+..+..... =..++|++.. .+..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 345899999999999999999888544322 1256666543 34555555544
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.40 E-value=0.06 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|+|+|+.|+||||+++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.40 E-value=0.044 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.7
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 332
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.39 E-value=0.064 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|.+.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 333
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.36 E-value=0.072 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+++++|.-|.|||||++.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3469999999999999999999873
No 334
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.33 E-value=0.097 Score=51.78 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=33.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSD-------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.++.++++.+....-... -.-... +.|+|..|+||||||+.+.+.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 457889887766655443211000 000112 889999999999999999984
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.32 E-value=0.049 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 336
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.30 E-value=0.1 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+.+-++|.+|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999984
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.29 E-value=0.23 Score=50.08 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=23.0
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...++|+|+|.+|+||||++..+..-
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998873
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.25 E-value=0.058 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=21.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.24 E-value=0.067 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 340
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.22 E-value=0.053 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.19 E-value=0.067 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.++|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.18 E-value=0.18 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.14 E-value=0.068 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999985
No 344
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.13 E-value=0.071 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.4
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+-.+|+|+|..|+||||+++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999999874
No 345
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.12 E-value=0.077 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+|+|.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999877
No 346
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.08 E-value=0.44 Score=48.39 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 184 VGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++..+.+.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHH
Confidence 455566666665332 2457889999999999999998763
No 347
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.06 E-value=0.077 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+.+||.|.|++|+||||.|+.+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.03 E-value=0.07 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 349
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.02 E-value=0.059 Score=49.45 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
|.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999876
No 350
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.01 E-value=0.08 Score=48.34 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|.|+|+.|.||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 351
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.00 E-value=0.21 Score=47.52 Aligned_cols=48 Identities=27% Similarity=0.330 Sum_probs=32.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhh---c-ccceEEEEEeCCCCCHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVK---R-EFHKILWACVSETFDEFR 251 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~ 251 (731)
.-.+++|+|..|+|||||++.+....... . .-...+|+.-...+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 45699999999999999999997632211 1 123477777665555443
No 352
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.98 E-value=0.14 Score=52.57 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHc
Q 039852 187 RNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..++.+.+.... .+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554332 3678999999999999999998876
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.88 E-value=0.077 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..+++.|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999874
No 354
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.87 E-value=1.6 Score=45.02 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=47.9
Q ss_pred hhhccccccEEeecCCccccccc-cccCCCceeEEeccCCcCcccCccc-ccCCCCcceeeccCCccccccccccCCCCC
Q 039852 404 NIEKLVHLRYLNLSGQDIVQLSE-TLCELYILEKLDISYCMDLEELPEG-IKKLINMRHLLNDGTDTLRYMVVGIGRLTG 481 (731)
Q Consensus 404 ~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 481 (731)
.+....+|+.+.+.. .++.++. .+.++.+|+.+++.. .+..++.. |.++ +|..+.+..+ +..++.......+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce--eeEeccceeccCC
Confidence 355566788888854 4777765 478889999999965 36666554 5554 6776666542 4455544333345
Q ss_pred CCccC
Q 039852 482 LRTLG 486 (731)
Q Consensus 482 L~~L~ 486 (731)
|+.+.
T Consensus 115 L~~i~ 119 (379)
T 4h09_A 115 LDDFE 119 (379)
T ss_dssp CSEEE
T ss_pred ccccc
Confidence 55553
No 355
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.85 E-value=0.67 Score=43.47 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-..|.|.|..|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 358899999999999999999874
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.84 E-value=0.075 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.81 E-value=0.076 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 358
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.81 E-value=0.07 Score=50.55 Aligned_cols=84 Identities=18% Similarity=0.027 Sum_probs=44.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCCCC--hhhHHHHHHHHHHHhC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGSTSN--LDALQSLLISIDESIA 282 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~l~ 282 (731)
-.++-|.|..|.||||++..+..+.. .+-..++.+.... +.+ -...++..++..... .....+....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 46888999999999999988777432 2222333333222 211 112333333322111 1222334444544444
Q ss_pred CCce-EEEehhh
Q 039852 283 GKRF-LLVLDDV 293 (731)
Q Consensus 283 ~kr~-llvlDdv 293 (731)
+.++ +||+|.+
T Consensus 87 ~~~~dvViIDEa 98 (223)
T 2b8t_A 87 NDETKVIGIDEV 98 (223)
T ss_dssp CTTCCEEEECSG
T ss_pred CCCCCEEEEecC
Confidence 4555 8999998
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.81 E-value=0.16 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+|+|+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 360
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.76 E-value=0.39 Score=47.81 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999998874
No 361
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.73 E-value=0.078 Score=50.24 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+++|+|..|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3469999999999999999999874
No 362
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.70 E-value=0.26 Score=56.58 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.++.++.+...+..... +.+.....+-++|..|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 4588999888888777653211 11234557899999999999999999984
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.68 E-value=0.057 Score=49.51 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=16.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 364
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.60 E-value=0.18 Score=51.59 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|+|+|..|+||||+++.+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999999884
No 365
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.57 E-value=0.16 Score=50.97 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEe
Q 039852 185 GERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACV 243 (731)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v 243 (731)
...+.+.+++..... ...+.+-|+|..|+|||+||+++++.... ..-..++++++
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 344455566654321 12467889999999999999999994331 22233445544
No 366
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.57 E-value=0.087 Score=54.07 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=32.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-++++|.+..+..+...+.... ..-|-|+|..|+|||++|+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 3468998876655444333211 122889999999999999999973
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.54 E-value=0.084 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.53 E-value=0.098 Score=51.81 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 369
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.50 E-value=0.075 Score=49.02 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEeeeccCcchHHHHHHHHHcch
Q 039852 207 IISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
+++|+|..|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998754
No 370
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.15 Score=47.01 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998874
No 371
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.38 E-value=0.097 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+|.|+|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.37 E-value=0.1 Score=52.10 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.+++|+|..|+||||+++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999884
No 373
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.37 E-value=0.095 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
. .+++|+|..|.|||||.+.+..
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 7999999999999999999987
No 374
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.36 E-value=0.083 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+|.|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 375
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.35 E-value=0.14 Score=53.23 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=34.4
Q ss_pred ccccchhHHHHHHHHHh----cCC--------------------CCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 179 EICGRVGERNELLSKML----CES--------------------SDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 179 ~~vGr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.++.++.+...+. ... .+.......|-++|..|+|||++|+.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 57888888887776662 000 000112345789999999999999999983
No 376
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.35 E-value=0.091 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 377
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.34 E-value=0.095 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
++|+|.|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998873
No 378
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.34 E-value=0.25 Score=51.63 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=50.8
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccc----eEEEEEeCCCCC-HHHHHHHHHHHccC-------CCCChhh-----
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFH----KILWACVSETFD-EFRIAKAMLEALTG-------STSNLDA----- 269 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~i~~~i~~~~~~-------~~~~~~~----- 269 (731)
.++|+|..|+|||+|+.++.+.... +-+ .++++-+.+... +.++.+++...-.. ...+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4789999999999999999985433 223 566677776654 44566655442100 0111111
Q ss_pred HHHHHHHHHHHh---CCCceEEEehhhH
Q 039852 270 LQSLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 270 ~~~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
.......+-+++ .++.+|+++||+-
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111122344444 3799999999984
No 379
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.33 E-value=0.072 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+|.|+|+.|.||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999987
No 380
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.32 E-value=0.11 Score=50.69 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
....++.++|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999863
No 381
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.30 E-value=0.15 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.24 E-value=0.086 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 383
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.20 E-value=0.092 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.16 E-value=0.1 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 385
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.10 E-value=0.58 Score=48.02 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcch
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
++++|+|+|..|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 57789999999999999999998753
No 386
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.08 E-value=0.21 Score=50.17 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCC
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETF 247 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 247 (731)
...++|+|+|-||+||||+|-.+..- ....=..++-|......
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 46789999999999999999888773 22222245556655433
No 387
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.98 E-value=0.073 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=16.0
Q ss_pred EEEeeeccCcchHHHHHHHHH-c
Q 039852 206 HIISIVGMGGIGKTTLAQLAS-N 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~-~ 227 (731)
.+++|+|..|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.88 E-value=0.093 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 389
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.88 E-value=0.1 Score=50.02 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999987
No 390
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.87 E-value=0.11 Score=56.72 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=35.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.++.++.+.+.+.-..-.....-.++.++|..|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 458888877777655443211000113568999999999999999999983
No 391
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.77 E-value=0.57 Score=47.74 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhh-cccceEEEEEeCCCC
Q 039852 188 NELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVK-REFHKILWACVSETF 247 (731)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 247 (731)
-++++.+..-. .=..++|+|..|+|||+|++.+.+..... ..+. ++++-+.+..
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 46777776432 23478999999999999999999843322 1222 3456666554
No 392
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.75 E-value=0.1 Score=49.63 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 393
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.67 E-value=0.096 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.8
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 394
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.63 E-value=0.12 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+++|+|..|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999999884
No 395
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.61 E-value=0.12 Score=48.46 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 396
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.54 E-value=0.12 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 397
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.51 E-value=0.32 Score=55.69 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=39.0
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESS---DQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.+..++.+...+..... +.......+-++|..|+|||++|+.+++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999888887764321 11233457999999999999999999984
No 398
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.43 E-value=0.44 Score=48.19 Aligned_cols=52 Identities=13% Similarity=-0.013 Sum_probs=36.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEA 259 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 259 (731)
.-.++.|.|.+|+||||+|..+..+.... =..++|++ -..+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fS--lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFS--LEMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEE--SSSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe--CCCCHHHHHHHHHHH
Confidence 34589999999999999999988754432 13456654 456677777776544
No 399
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.42 E-value=0.12 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 400
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.34 E-value=0.14 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.|+|+.|+||||||..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999883
No 401
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.33 E-value=0.097 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999874
No 402
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.32 E-value=0.12 Score=50.43 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.32 E-value=0.12 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.8
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999987
No 404
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.31 E-value=2.2 Score=43.62 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+...|+++|..|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4668999999999999999999875
No 405
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.28 E-value=0.13 Score=48.59 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.27 E-value=0.27 Score=51.63 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=35.4
Q ss_pred CccccchhHHHHHHHHHhcC--------CCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCE--------SSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.++.++.+...+... ........+-|-++|+.|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889888888876665321 0000112345889999999999999999983
No 407
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.26 E-value=0.73 Score=48.70 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=50.4
Q ss_pred EEEeeeccCcchHHHHH-HHHHcchhhhcccce-EEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChhhHHH---
Q 039852 206 HIISIVGMGGIGKTTLA-QLASNHVEVKREFHK-ILWACVSETFD-EFRIAKAMLEALTGS-------TSNLDALQS--- 272 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~~~~~--- 272 (731)
..++|+|..|+|||+|| ..+.|.. .-+. ++++-+.+..+ +.++.+++...-... ..+.....+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999995 5788843 2453 56777887764 345566665421111 111111111
Q ss_pred --HHHHHHHHh--CCCceEEEehhhH
Q 039852 273 --LLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 273 --~~~~l~~~l--~~kr~llvlDdvw 294 (731)
....+-+++ +|+.+|+++||+-
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 112233333 5899999999984
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.23 E-value=0.13 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=21.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
..+|.|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 409
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.22 E-value=0.21 Score=53.49 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=34.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCC------CCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 177 EEEICGRVGERNELLSKMLCESSD------QQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 177 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|.++.+.++.+....-..+ +-.-.+=|.|+|..|.||||||+.+++.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 457899887776665543321000 0001123889999999999999999984
No 410
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.17 E-value=0.16 Score=53.42 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcch
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
+.++|.|+|.+|+||||++..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999888743
No 411
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.15 E-value=0.28 Score=48.01 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=26.4
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
++|+|.|-||+||||+|..+..--. ..=..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCC
Confidence 6888999999999999988887322 2222455555543
No 412
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.15 E-value=0.13 Score=47.45 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..-.|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999998874
No 413
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.14 E-value=0.13 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.8
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 414
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.12 E-value=0.14 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=21.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999983
No 415
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.11 E-value=0.16 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 416
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.08 E-value=0.14 Score=49.35 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999873
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.07 E-value=0.26 Score=46.95 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcch
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHV 229 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 229 (731)
.-.+|.|.|+.|+||||+++.+.+.-
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999843
No 418
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.06 E-value=0.14 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 419
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.06 E-value=0.14 Score=48.89 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=22.8
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..-.+|+|.|..|.||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998874
No 420
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.06 E-value=0.72 Score=49.23 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHH-HHHHHH
Q 039852 189 ELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEF-RIAKAM 256 (731)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~i~~~i 256 (731)
++++.|..-. +=..++|+|..|+|||+|++.+.+. .+-+.++++-+.+..+.. ++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4556665322 2357899999999999999998773 233578888888887643 455443
No 421
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.06 E-value=0.16 Score=45.00 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+-|.++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 422
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.05 E-value=0.11 Score=48.84 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 423
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.03 E-value=0.14 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=21.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 424
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.02 E-value=0.14 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999987
No 425
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.00 E-value=0.13 Score=47.04 Aligned_cols=22 Identities=45% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 426
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.98 E-value=0.14 Score=48.87 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 427
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.97 E-value=0.14 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999987
No 428
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.96 E-value=0.29 Score=48.58 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=27.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCC
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSE 245 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 245 (731)
.++|+|.|-||+||||+|..+..--..+ . ..++-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~-G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM-G-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC-C-CeEEEEecCC
Confidence 4789999999999999998888733222 2 2344455543
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.96 E-value=0.15 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999873
No 430
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.93 E-value=0.16 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|+|+|.+|+||||++..++.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 431
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.89 E-value=0.15 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||.+.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 432
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.86 E-value=0.14 Score=49.46 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 433
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.82 E-value=0.86 Score=42.45 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=31.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE 258 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 258 (731)
+.|.|-|.-|+||||+++.+.+. ....++.. ...-.......+..++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v~-~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDVI-MTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCEE-EEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCEE-EeeCCCCChHHHHHHHHHh
Confidence 46889999999999999999884 33444432 2222223333444555443
No 434
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.80 E-value=0.15 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 435
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.75 E-value=0.44 Score=47.42 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=34.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEA 259 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 259 (731)
-.+++|+|..|+|||||++.+........ =..++|+... .+..++...+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc--CCHHHHHHHHHHH
Confidence 45999999999999999999987533321 1145565543 3455555555444
No 436
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.61 E-value=0.41 Score=50.62 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=50.4
Q ss_pred EEEeeeccCcchHHHHH-HHHHcchhhhcccce-EEEEEeCCCCC-HHHHHHHHHHHccC-------CCCChhhH-----
Q 039852 206 HIISIVGMGGIGKTTLA-QLASNHVEVKREFHK-ILWACVSETFD-EFRIAKAMLEALTG-------STSNLDAL----- 270 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~~~~-------~~~~~~~~----- 270 (731)
..++|+|..|+|||+|| ..+.+.. .-+. ++++-+.+..+ +.++.+.+...-.. ...+....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999995 5888843 2453 56777787764 34556665542110 01111111
Q ss_pred HHHHHHHHHHh--CCCceEEEehhhH
Q 039852 271 QSLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
......+-+++ +|+.+|+++||+-
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11112233333 5899999999984
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.61 E-value=0.15 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999883
No 438
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.60 E-value=0.15 Score=50.03 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||.+.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 439
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.50 E-value=0.15 Score=47.33 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.47 E-value=0.16 Score=48.24 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 441
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.45 E-value=0.16 Score=49.12 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.7
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 442
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.40 E-value=0.16 Score=47.88 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEeeeccCcchHHHHHHHHHc
Q 039852 207 IISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 443
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.40 E-value=0.17 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.38 E-value=0.18 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCcEEEeeeccCcchHHHHHHHHHc
Q 039852 203 KGLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 203 ~~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
....+|+|+|+.|.||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999887
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.38 E-value=0.16 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.2
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 446
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.34 E-value=0.18 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+++|+|..|.|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 346999999999999999999887
No 447
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.34 E-value=0.093 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=18.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999877
No 448
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.29 E-value=1.3 Score=41.52 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=33.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE 258 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 258 (731)
..|.|.|..|+||||+++.+...-.- ..+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 47899999999999999999984332 23433333333333334455666655
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.26 E-value=0.18 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999873
No 450
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.26 E-value=0.17 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999873
No 451
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.22 E-value=0.44 Score=49.74 Aligned_cols=89 Identities=12% Similarity=0.221 Sum_probs=51.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhh--------cccc-eEEEEEeCCCCC-HHHHHHHHHHHcc----------CCCC
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVK--------REFH-KILWACVSETFD-EFRIAKAMLEALT----------GSTS 265 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~i~~~i~~~~~----------~~~~ 265 (731)
..++|+|..|+|||+|+.++.+..... ++=+ .++++-+.+... +.++.+++...-. .+.+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 356899999999999999998854431 1111 466666776654 3455555443210 1111
Q ss_pred Chh--hHHHHHHHHHHHh---CCCceEEEehhhH
Q 039852 266 NLD--ALQSLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 266 ~~~--~~~~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
... -.......+-+++ .++.+|+++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111 1111222344444 3799999999984
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.19 E-value=0.17 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.1
Q ss_pred cEEEeeeccCcchHHHHHHHHHc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999987
No 453
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.10 E-value=0.22 Score=55.31 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=35.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 178 EEICGRVGERNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 178 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|.+..++.+...+..+ ..+.|+|..|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899888887777766532 47899999999999999999883
No 454
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.01 E-value=0.17 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.++|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 455
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.00 E-value=0.19 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.97 E-value=0.23 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...|+++|..|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 457
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.96 E-value=1.2 Score=48.17 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=36.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEAL 260 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~ 260 (731)
.-.++-|.|.+|+||||+|..+..+...+ +=..++|++. ..+..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec--cCCHHHHHHHHHHHH
Confidence 44688999999999999999988754332 1135666655 445667777665443
No 458
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.95 E-value=0.2 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.166 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..++|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999873
No 459
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.86 E-value=0.18 Score=49.42 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999973
No 460
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.82 E-value=0.76 Score=48.65 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEeeeccCcchHHHH-HHHHHcchhh----hcccc-eEEEEEeCCCCC-HHHHHHHHHHHcc
Q 039852 189 ELLSKMLCESSDQQKGLHIISIVGMGGIGKTTL-AQLASNHVEV----KREFH-KILWACVSETFD-EFRIAKAMLEALT 261 (731)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtL-a~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~~~ 261 (731)
+.++.|..-. .=..++|+|..|+|||+| ...+.|.... .++-+ .++++-+.+..+ +.++.+.+...-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3555555322 234678999999999999 4677774332 02244 367788887764 3455555554211
Q ss_pred C-------CCCChhhH-----HHHHHHHHHHh--CCCceEEEehhhH
Q 039852 262 G-------STSNLDAL-----QSLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 262 ~-------~~~~~~~~-----~~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
. ...+.... ......+-+++ .|+.+|+++||+-
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0 01111111 11111233333 5899999999984
No 461
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.79 E-value=1.3 Score=46.75 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=34.2
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE 258 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 258 (731)
.-.++-|.|.+|+||||+|..+..+...++ ..++|++. ..+..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSl--Ems~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSL--EMGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECS--SSCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEEC--CCCHHHHHHHHHH
Confidence 446899999999999999999888644432 34666544 3444455555443
No 462
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.76 E-value=0.21 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999987
No 463
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.72 E-value=0.34 Score=44.73 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcc
Q 039852 187 RNELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+..++.. . ++-+.+.|+|++|.||||+|..+.+.
T Consensus 45 ~~~l~~~~~~-i----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-T----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-C----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555542 1 23456899999999999999998884
No 464
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.71 E-value=0.19 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.1
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
--|.++|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36789999999999999999864
No 465
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.69 E-value=0.41 Score=44.51 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=27.7
Q ss_pred EEEeee-ccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC
Q 039852 206 HIISIV-GMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD 248 (731)
Q Consensus 206 ~vi~I~-G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (731)
++|+|+ +-||+||||+|..+...-. ..=..++-+......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCCC
Confidence 688888 6799999999988887332 2223455566654433
No 466
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.65 E-value=0.21 Score=44.94 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 446889999999999999998875
No 467
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.60 E-value=0.2 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+|.|.|++|+||||.|+.+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999873
No 468
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.52 E-value=0.46 Score=44.68 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=25.2
Q ss_pred EEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCC
Q 039852 207 IISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSET 246 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 246 (731)
.|.+.|.||+||||+|-.+..... ...++ ++.+.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCC
Confidence 477789999999999888887432 22334 334455443
No 469
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.51 E-value=1.3 Score=46.77 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=49.8
Q ss_pred EEEeeeccCcchHHHHH-HHHHcchhhhcccce-EEEEEeCCCCC-HHHHHHHHHHHccCC--------CCChhhH----
Q 039852 206 HIISIVGMGGIGKTTLA-QLASNHVEVKREFHK-ILWACVSETFD-EFRIAKAMLEALTGS--------TSNLDAL---- 270 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~~~~~--------~~~~~~~---- 270 (731)
..++|+|..|+|||+|| ..+.|. .+-+. ++++-+.+..+ +.++.+++...-... ..+....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 36789999999999996 677773 22343 57788888764 345666654431111 1111100
Q ss_pred HHHHHHHHHHh--CCCceEEEehhhH
Q 039852 271 QSLLISIDESI--AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l--~~kr~llvlDdvw 294 (731)
......+-+++ +|+.+|+++||+-
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11111222333 5899999999984
No 470
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.45 E-value=0.19 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.++++.|+|+-|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999864
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.35 E-value=0.69 Score=43.64 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=33.8
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLE 258 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 258 (731)
.-..|.|.|..|+||||+++.+.+.-.....++......-.......+..++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 4578999999999999999999984332123444331222333233444555554
No 472
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.34 E-value=0.26 Score=43.91 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.7
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998864
No 473
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.33 E-value=0.42 Score=50.59 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=48.9
Q ss_pred EEEeeeccCcchHHHHH-HHHHcchhhhcccce-EEEEEeCCCCCH-HHHHHHHHHHcc----------CCCCCh-----
Q 039852 206 HIISIVGMGGIGKTTLA-QLASNHVEVKREFHK-ILWACVSETFDE-FRIAKAMLEALT----------GSTSNL----- 267 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~~-~~i~~~i~~~~~----------~~~~~~----- 267 (731)
..++|+|..|+|||+|| ..+.|.. .-+. ++++-+.+..+. .++.+.+...-. .+.+..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46789999999999995 6888853 2343 577777777643 344444443110 011111
Q ss_pred -hhHHHHHHHHHHHhCCCceEEEehhhH
Q 039852 268 -DALQSLLISIDESIAGKRFLLVLDDVM 294 (731)
Q Consensus 268 -~~~~~~~~~l~~~l~~kr~llvlDdvw 294 (731)
...-...+.++. +|+.+|+++||+-
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 011112233333 5999999999984
No 474
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.32 E-value=0.28 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+...|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5667899999999999999998764
No 475
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.25 E-value=0.22 Score=48.62 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999873
No 476
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.18 E-value=0.57 Score=58.27 Aligned_cols=84 Identities=24% Similarity=0.182 Sum_probs=55.0
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHHccCCC-----CChhhHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEALTGST-----SNLDALQSLLISID 278 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~-----~~~~~~~~~~~~l~ 278 (731)
.-++|-|+|+.|+|||+||.++..... .+=..++|+++.+.++... +..++.+. ......++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 567999999999999999999987433 2234678888888887666 33333110 01122345555555
Q ss_pred HHhC-CCceEEEehhhH
Q 039852 279 ESIA-GKRFLLVLDDVM 294 (731)
Q Consensus 279 ~~l~-~kr~llvlDdvw 294 (731)
+..+ .+--+||+|.+-
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 556689999983
No 477
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.08 E-value=0.46 Score=49.89 Aligned_cols=89 Identities=12% Similarity=0.189 Sum_probs=52.6
Q ss_pred EEEeeeccCcchHHHHHHHHHcchhhhcc--cceEEEEEeCCCCC-HHHHHHHHHHHccCC-------CCChh-----hH
Q 039852 206 HIISIVGMGGIGKTTLAQLASNHVEVKRE--FHKILWACVSETFD-EFRIAKAMLEALTGS-------TSNLD-----AL 270 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~-------~~~~~-----~~ 270 (731)
..++|+|..|+|||+|+.++.++....+. =+.++++-+.+... +.++.+++...-... ..+.. -.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 35788999999999999999986443221 13566677776654 456666665431110 01110 11
Q ss_pred HHHHHHHHHHh---CCCceEEEehhhH
Q 039852 271 QSLLISIDESI---AGKRFLLVLDDVM 294 (731)
Q Consensus 271 ~~~~~~l~~~l---~~kr~llvlDdvw 294 (731)
......+-+++ +|+.+|+++||+-
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11122334444 4799999999984
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.07 E-value=0.24 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.5
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
...+|.|+|+.|+||||+|+.+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999998873
No 479
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.03 E-value=0.23 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..|+|+|..|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999874
No 480
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.02 E-value=0.23 Score=44.19 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.-|.++|..|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 481
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.97 E-value=0.5 Score=48.86 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=31.3
Q ss_pred CCCcEEEeeec-cCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC
Q 039852 202 QKGLHIISIVG-MGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD 248 (731)
Q Consensus 202 ~~~~~vi~I~G-~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 248 (731)
+.+.++|+|+| -||+||||+|-.+..- ....=..++.+......+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D~~~~ 185 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIEQCGT 185 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECCTTCC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECCCCCC
Confidence 45689999995 8999999999888773 222223466677664333
No 482
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.91 E-value=0.25 Score=44.24 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 483
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.89 E-value=0.39 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.106 Sum_probs=21.9
Q ss_pred CcEEEeeeccCcchHHHHHHHHHc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
.-.+++|+|..|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999997
No 484
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.80 E-value=0.25 Score=44.10 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
--|.|+|..|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.79 E-value=0.26 Score=47.39 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..|.|.|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 486
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.78 E-value=0.24 Score=44.05 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.|+|..|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 487
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.77 E-value=0.22 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.++|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 488
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.72 E-value=0.28 Score=45.09 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
+...|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999999875
No 489
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.68 E-value=0.23 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.++.|+|..|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 459999999999999999998863
No 490
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.63 E-value=0.41 Score=46.03 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=31.3
Q ss_pred cEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHH
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAM 256 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 256 (731)
-.++.|.|..|+||||||..+..... ..=..++|++... ...++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS--CHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC--CHHHHHHHH
Confidence 45899999999999999887765322 1223566766544 344444433
No 491
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.63 E-value=0.51 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=18.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-..|.|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999984
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.58 E-value=0.25 Score=44.16 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.3
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..--|.|+|..|+|||||...+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998864
No 493
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=87.56 E-value=0.78 Score=49.16 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCC-HHHHHHH
Q 039852 189 ELLSKMLCESSDQQKGLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFD-EFRIAKA 255 (731)
Q Consensus 189 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~ 255 (731)
++++.|..-. +=..++|+|..|+|||+|++++.+.. +-+.++++-+.+... +.++.++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4566665332 23578999999999999999998842 335677787777643 3344444
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.47 E-value=0.25 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.1
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcc
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
..--|.|+|.+|+|||||++.+.++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998864
No 495
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.47 E-value=0.25 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.6
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-.+++|+|..|.|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999873
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.40 E-value=0.27 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEeeeccCcchHHHHHHHHHc
Q 039852 206 HIISIVGMGGIGKTTLAQLASN 227 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~ 227 (731)
++|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999887
No 497
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.39 E-value=0.26 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=20.0
Q ss_pred cEEEeeeccCcchHHHHHHHHHcc
Q 039852 205 LHIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 205 ~~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999877654
No 498
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.39 E-value=0.26 Score=43.98 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.3
Q ss_pred EEEeeeccCcchHHHHHHHHHcc
Q 039852 206 HIISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 206 ~vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
--|.|+|..|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998865
No 499
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.32 E-value=0.27 Score=43.88 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEeeeccCcchHHHHHHHHHcc
Q 039852 207 IISIVGMGGIGKTTLAQLASNH 228 (731)
Q Consensus 207 vi~I~G~gGvGKTtLa~~v~~~ 228 (731)
-|.++|..|+|||||...+.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 500
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.29 E-value=1.6 Score=46.18 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=36.7
Q ss_pred CcEEEeeeccCcchHHHHHHHHHcchhhhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 039852 204 GLHIISIVGMGGIGKTTLAQLASNHVEVKREFHKILWACVSETFDEFRIAKAMLEA 259 (731)
Q Consensus 204 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 259 (731)
.-.++.|.|.+|+||||+|..+..+..... =..++|++. ..+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~sl--E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSL--EMPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEC--CCCHHHHHHHHHHH
Confidence 346899999999999999999887543321 134666654 45566777766543
Done!