Query 039853
Match_columns 206
No_of_seqs 199 out of 1532
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00931 NB-ARC: NB-ARC domain 99.9 5.1E-27 1.1E-31 191.2 8.1 146 42-194 5-174 (287)
2 KOG4658 Apoptotic ATPase [Sign 99.9 6.7E-26 1.5E-30 207.0 11.6 150 28-194 161-334 (889)
3 PLN03210 Resistant to P. syrin 99.9 9.8E-25 2.1E-29 206.3 15.2 179 8-201 163-375 (1153)
4 PF05729 NACHT: NACHT domain 99.4 5.9E-12 1.3E-16 93.9 10.3 128 62-189 1-162 (166)
5 COG2256 MGS1 ATPase related to 99.3 6.2E-12 1.3E-16 104.4 7.7 153 16-188 14-174 (436)
6 PF01637 Arch_ATPase: Archaeal 99.2 1.3E-10 2.7E-15 91.3 8.5 147 27-189 1-203 (234)
7 PRK00411 cdc6 cell division co 99.2 4.5E-10 9.7E-15 95.6 11.8 156 23-190 28-220 (394)
8 TIGR02928 orc1/cdc6 family rep 99.0 4.4E-09 9.5E-14 88.6 12.0 157 23-190 13-212 (365)
9 TIGR03015 pepcterm_ATPase puta 99.0 1.9E-08 4.1E-13 81.2 14.6 126 61-190 43-205 (269)
10 PF13173 AAA_14: AAA domain 99.0 8.2E-10 1.8E-14 79.6 5.7 117 62-182 3-127 (128)
11 PRK13342 recombination factor 99.0 1.7E-09 3.7E-14 92.8 8.0 146 23-190 10-164 (413)
12 PRK06893 DNA replication initi 99.0 1.8E-09 3.9E-14 85.5 7.1 124 62-192 40-176 (229)
13 PRK13341 recombination factor 98.9 6.9E-09 1.5E-13 94.2 10.1 152 16-190 18-181 (725)
14 TIGR00635 ruvB Holliday juncti 98.9 8.2E-10 1.8E-14 90.9 3.7 148 25-190 4-172 (305)
15 PRK00080 ruvB Holliday junctio 98.9 7.9E-09 1.7E-13 86.1 7.8 150 23-190 23-193 (328)
16 PLN03025 replication factor C 98.8 1.3E-08 2.8E-13 84.5 8.5 152 23-190 11-171 (319)
17 KOG2028 ATPase related to the 98.8 9.4E-09 2E-13 84.9 7.1 124 60-188 161-292 (554)
18 TIGR03420 DnaA_homol_Hda DnaA 98.8 2.7E-08 5.8E-13 78.3 9.5 131 42-189 26-171 (226)
19 cd00009 AAA The AAA+ (ATPases 98.8 6.1E-09 1.3E-13 75.3 4.9 110 42-161 7-131 (151)
20 PRK12402 replication factor C 98.8 3.9E-08 8.5E-13 81.8 10.0 152 24-190 14-197 (337)
21 PF13401 AAA_22: AAA domain; P 98.8 1.6E-08 3.4E-13 72.7 6.5 96 60-159 3-125 (131)
22 PRK07003 DNA polymerase III su 98.8 3.2E-08 7E-13 89.1 9.4 160 16-189 6-190 (830)
23 PRK14961 DNA polymerase III su 98.8 1.5E-07 3.2E-12 79.6 12.9 159 16-189 6-190 (363)
24 TIGR01242 26Sp45 26S proteasom 98.8 2.2E-08 4.7E-13 84.6 7.7 156 26-193 123-309 (364)
25 PRK04841 transcriptional regul 98.8 6.1E-08 1.3E-12 90.6 11.3 130 60-190 31-199 (903)
26 PRK14960 DNA polymerase III su 98.8 5.1E-08 1.1E-12 86.8 9.7 160 17-190 6-190 (702)
27 PRK06645 DNA polymerase III su 98.7 1.1E-07 2.5E-12 83.1 11.3 154 23-190 19-200 (507)
28 PRK00440 rfc replication facto 98.7 6.5E-08 1.4E-12 79.9 9.0 147 25-190 17-174 (319)
29 PF13191 AAA_16: AAA ATPase do 98.7 1.3E-08 2.9E-13 77.2 3.9 51 26-88 1-51 (185)
30 PRK09087 hypothetical protein; 98.7 8.2E-08 1.8E-12 75.9 8.4 112 61-190 44-166 (226)
31 TIGR02639 ClpA ATP-dependent C 98.7 1.2E-07 2.5E-12 87.0 10.3 159 9-189 165-357 (731)
32 PRK14963 DNA polymerase III su 98.7 2.1E-07 4.5E-12 81.6 11.4 158 18-190 6-188 (504)
33 PRK05564 DNA polymerase III su 98.7 1.3E-07 2.9E-12 78.2 9.7 147 26-189 5-164 (313)
34 TIGR02903 spore_lon_C ATP-depe 98.7 1.4E-07 2.9E-12 84.8 10.2 152 23-190 152-366 (615)
35 PRK14962 DNA polymerase III su 98.7 8.2E-08 1.8E-12 83.5 8.5 160 16-190 4-189 (472)
36 PRK14949 DNA polymerase III su 98.7 1.7E-07 3.6E-12 85.9 10.7 160 16-189 6-190 (944)
37 PRK08691 DNA polymerase III su 98.7 8.5E-08 1.8E-12 85.9 8.5 160 16-189 6-190 (709)
38 CHL00095 clpC Clp protease ATP 98.7 2E-07 4.2E-12 86.5 10.9 145 24-188 178-352 (821)
39 PRK12323 DNA polymerase III su 98.6 1.3E-07 2.9E-12 84.1 9.0 160 16-189 6-195 (700)
40 PRK14957 DNA polymerase III su 98.6 4.6E-07 1E-11 79.9 12.2 159 16-188 6-189 (546)
41 PRK04195 replication factor C 98.6 1.3E-07 2.8E-12 82.8 8.6 149 23-190 12-173 (482)
42 PRK14956 DNA polymerase III su 98.6 3.6E-07 7.8E-12 79.0 11.0 161 16-190 8-193 (484)
43 PTZ00112 origin recognition co 98.6 4.8E-07 1E-11 82.6 12.1 157 23-191 753-950 (1164)
44 PRK03992 proteasome-activating 98.6 1.6E-07 3.5E-12 80.0 8.2 151 26-191 132-316 (389)
45 PRK07994 DNA polymerase III su 98.6 4.9E-07 1.1E-11 81.0 11.3 160 16-189 6-190 (647)
46 PRK08727 hypothetical protein; 98.6 4.9E-07 1.1E-11 71.8 10.2 121 62-191 42-176 (233)
47 PRK14955 DNA polymerase III su 98.6 4.3E-07 9.3E-12 77.6 10.5 157 18-189 8-198 (397)
48 TIGR03345 VI_ClpV1 type VI sec 98.6 3.7E-07 7.9E-12 84.7 10.7 146 23-188 185-361 (852)
49 PF05496 RuvB_N: Holliday junc 98.6 4.1E-07 8.9E-12 71.1 9.2 157 16-190 14-192 (233)
50 TIGR02397 dnaX_nterm DNA polym 98.6 8.3E-07 1.8E-11 74.5 11.7 154 23-190 12-189 (355)
51 PHA02544 44 clamp loader, smal 98.6 3.5E-07 7.6E-12 75.7 9.2 144 23-187 19-170 (316)
52 PRK08084 DNA replication initi 98.6 7.2E-07 1.6E-11 70.9 10.6 119 62-190 46-180 (235)
53 TIGR02881 spore_V_K stage V sp 98.6 1.8E-06 4E-11 69.6 12.7 129 59-190 40-191 (261)
54 PRK14964 DNA polymerase III su 98.5 7.6E-07 1.6E-11 77.6 10.8 154 23-190 11-188 (491)
55 PRK14951 DNA polymerase III su 98.5 7.3E-07 1.6E-11 79.7 10.7 160 16-189 6-195 (618)
56 PRK09112 DNA polymerase III su 98.5 4.8E-07 1E-11 76.0 8.9 153 23-190 21-213 (351)
57 PRK14954 DNA polymerase III su 98.5 2.5E-06 5.4E-11 76.5 13.7 158 18-189 8-198 (620)
58 PRK07471 DNA polymerase III su 98.5 3E-06 6.5E-11 71.6 13.2 153 23-190 17-213 (365)
59 PRK07940 DNA polymerase III su 98.5 1.6E-06 3.5E-11 73.8 11.3 155 26-189 6-188 (394)
60 PF00004 AAA: ATPase family as 98.5 1.2E-07 2.5E-12 67.9 3.8 89 64-159 1-111 (132)
61 PRK14958 DNA polymerase III su 98.5 1.8E-06 4E-11 75.9 11.3 158 16-188 6-189 (509)
62 PRK05896 DNA polymerase III su 98.5 1.5E-06 3.3E-11 77.1 10.7 160 16-189 6-190 (605)
63 PRK14969 DNA polymerase III su 98.5 1.3E-06 2.9E-11 77.1 10.3 160 16-189 6-190 (527)
64 PRK10865 protein disaggregatio 98.5 1.6E-06 3.6E-11 80.6 11.3 157 12-189 164-353 (857)
65 TIGR03346 chaperone_ClpB ATP-d 98.5 1.5E-06 3.2E-11 81.0 10.8 146 23-189 171-348 (852)
66 PF00308 Bac_DnaA: Bacterial d 98.4 2E-07 4.3E-12 73.3 4.2 123 60-190 33-179 (219)
67 PRK09111 DNA polymerase III su 98.4 2E-06 4.2E-11 76.9 10.8 160 16-190 14-204 (598)
68 PRK14970 DNA polymerase III su 98.4 2E-06 4.2E-11 72.8 10.3 156 19-190 10-180 (367)
69 PRK11034 clpA ATP-dependent Cl 98.4 1.8E-06 3.8E-11 79.1 10.6 145 24-189 185-361 (758)
70 TIGR00678 holB DNA polymerase 98.4 1.3E-05 2.8E-10 61.4 14.0 128 61-189 14-167 (188)
71 COG1474 CDC6 Cdc6-related prot 98.4 4.6E-06 9.9E-11 70.4 12.2 153 24-190 16-203 (366)
72 PRK06620 hypothetical protein; 98.4 9.2E-07 2E-11 69.3 7.5 109 62-190 45-160 (214)
73 PRK07764 DNA polymerase III su 98.4 1.6E-06 3.4E-11 80.0 10.0 157 18-189 7-191 (824)
74 PRK14959 DNA polymerase III su 98.4 4.1E-06 8.8E-11 74.7 11.3 153 23-190 14-191 (624)
75 PRK05642 DNA replication initi 98.4 1.3E-06 2.9E-11 69.4 7.4 120 61-190 45-179 (234)
76 PTZ00202 tuzin; Provisional 98.4 3.2E-06 7E-11 72.2 10.0 152 19-189 256-433 (550)
77 TIGR02880 cbbX_cfxQ probable R 98.4 2.9E-06 6.2E-11 69.4 9.4 118 63-190 60-208 (284)
78 PRK14952 DNA polymerase III su 98.4 7.7E-06 1.7E-10 72.9 12.7 152 23-189 11-189 (584)
79 PRK08903 DnaA regulatory inact 98.4 4.7E-06 1E-10 65.8 10.1 117 61-188 42-168 (227)
80 PRK14950 DNA polymerase III su 98.3 8.8E-06 1.9E-10 72.9 12.6 160 16-190 6-192 (585)
81 PRK06305 DNA polymerase III su 98.3 3.1E-06 6.6E-11 73.5 8.2 159 16-189 7-192 (451)
82 PRK08181 transposase; Validate 98.3 2.3E-06 5E-11 69.3 7.0 90 62-160 107-209 (269)
83 CHL00181 cbbX CbbX; Provisiona 98.3 1.1E-05 2.3E-10 66.1 10.9 119 62-190 60-209 (287)
84 PRK08451 DNA polymerase III su 98.3 9.6E-06 2.1E-10 71.4 11.2 153 23-189 12-188 (535)
85 PRK14971 DNA polymerase III su 98.2 1.5E-05 3.2E-10 71.7 11.9 153 23-189 15-192 (614)
86 PRK12422 chromosomal replicati 98.2 6.7E-06 1.4E-10 71.2 9.0 122 61-190 141-284 (445)
87 PRK14087 dnaA chromosomal repl 98.2 5E-06 1.1E-10 72.2 8.3 124 61-190 141-288 (450)
88 PRK07133 DNA polymerase III su 98.2 2.2E-05 4.8E-10 71.2 12.2 158 17-189 9-189 (725)
89 PRK06647 DNA polymerase III su 98.2 2.9E-05 6.2E-10 69.2 12.5 160 17-190 7-191 (563)
90 PRK14953 DNA polymerase III su 98.2 3.9E-05 8.4E-10 67.2 13.0 152 23-189 14-190 (486)
91 PRK08116 hypothetical protein; 98.2 6.1E-06 1.3E-10 66.9 7.5 94 62-160 115-221 (268)
92 PRK14965 DNA polymerase III su 98.2 9.1E-06 2E-10 72.6 9.2 158 16-188 6-189 (576)
93 PRK14948 DNA polymerase III su 98.2 2.5E-05 5.4E-10 70.3 12.0 158 18-189 8-192 (620)
94 PRK14086 dnaA chromosomal repl 98.2 5.8E-06 1.2E-10 73.6 7.6 121 62-190 315-459 (617)
95 TIGR00362 DnaA chromosomal rep 98.2 1.1E-05 2.5E-10 69.1 9.2 122 61-190 136-281 (405)
96 PRK00149 dnaA chromosomal repl 98.2 9.7E-06 2.1E-10 70.5 8.7 122 61-190 148-293 (450)
97 TIGR02639 ClpA ATP-dependent C 98.1 3.9E-05 8.5E-10 70.5 12.7 154 24-189 453-661 (731)
98 PF13177 DNA_pol3_delta2: DNA 98.1 2.7E-05 5.8E-10 58.4 9.6 130 42-178 6-162 (162)
99 PRK05563 DNA polymerase III su 98.1 4.3E-05 9.4E-10 68.1 12.2 160 16-190 6-191 (559)
100 PF01695 IstB_IS21: IstB-like 98.1 2.3E-06 5.1E-11 65.2 3.6 91 61-160 47-150 (178)
101 COG2909 MalT ATP-dependent tra 98.1 1.2E-05 2.5E-10 73.0 8.5 143 42-190 24-207 (894)
102 PF05673 DUF815: Protein of un 98.1 2E-05 4.3E-10 62.5 8.7 97 61-162 52-153 (249)
103 PRK14088 dnaA chromosomal repl 98.1 1.6E-05 3.5E-10 68.9 9.0 123 61-190 130-276 (440)
104 TIGR00602 rad24 checkpoint pro 98.1 3.4E-05 7.3E-10 69.4 11.2 61 18-88 76-137 (637)
105 PTZ00454 26S protease regulato 98.1 1.5E-05 3.3E-10 68.0 8.4 123 60-189 178-328 (398)
106 TIGR01241 FtsH_fam ATP-depende 98.1 3.8E-05 8.3E-10 67.6 11.1 124 60-190 87-238 (495)
107 TIGR03689 pup_AAA proteasome A 98.1 1.7E-05 3.7E-10 69.5 8.7 130 60-190 215-378 (512)
108 CHL00176 ftsH cell division pr 98.1 2.2E-05 4.8E-10 70.8 9.7 142 42-190 195-366 (638)
109 COG3899 Predicted ATPase [Gene 98.1 2.4E-05 5.2E-10 72.8 10.0 51 26-88 1-51 (849)
110 PRK08058 DNA polymerase III su 98.1 3.3E-05 7.2E-10 64.5 9.9 142 42-189 15-181 (329)
111 TIGR03345 VI_ClpV1 type VI sec 98.1 2.4E-05 5.1E-10 72.9 9.9 125 24-159 565-718 (852)
112 PRK12377 putative replication 98.1 1.2E-05 2.5E-10 64.5 6.8 91 62-159 102-205 (248)
113 PRK06526 transposase; Provisio 98.1 5.1E-06 1.1E-10 66.8 4.9 91 61-160 98-201 (254)
114 TIGR02640 gas_vesic_GvpN gas v 98.0 5.4E-05 1.2E-09 61.2 10.4 140 37-189 6-197 (262)
115 PRK10536 hypothetical protein; 98.0 1.5E-05 3.3E-10 63.8 6.9 43 25-84 55-97 (262)
116 smart00382 AAA ATPases associa 98.0 3.3E-05 7.1E-10 54.9 8.2 27 62-88 3-29 (148)
117 PRK10865 protein disaggregatio 98.0 5.3E-05 1.1E-09 70.8 11.5 125 24-159 567-720 (857)
118 PTZ00361 26 proteosome regulat 98.0 1.1E-05 2.3E-10 69.6 6.3 124 60-190 216-367 (438)
119 PRK05707 DNA polymerase III su 98.0 3.3E-05 7.1E-10 64.4 9.0 129 60-189 21-177 (328)
120 COG1484 DnaC DNA replication p 98.0 1.6E-05 3.5E-10 63.9 6.5 81 42-138 95-185 (254)
121 TIGR00763 lon ATP-dependent pr 98.0 5.2E-05 1.1E-09 70.2 10.5 146 42-189 329-504 (775)
122 PRK08939 primosomal protein Dn 98.0 8E-06 1.7E-10 67.4 4.7 91 61-159 156-260 (306)
123 KOG0741 AAA+-type ATPase [Post 98.0 3.9E-05 8.5E-10 66.6 8.5 132 59-195 536-692 (744)
124 PRK10787 DNA-binding ATP-depen 98.0 3.5E-05 7.5E-10 71.1 8.8 147 42-190 331-506 (784)
125 COG1373 Predicted ATPase (AAA+ 98.0 7.1E-05 1.5E-09 64.0 10.0 117 63-184 39-161 (398)
126 COG0593 DnaA ATPase involved i 97.9 3.4E-05 7.4E-10 65.6 7.7 120 60-190 112-257 (408)
127 COG0466 Lon ATP-dependent Lon 97.9 2.3E-05 4.9E-10 70.1 6.9 155 26-190 324-508 (782)
128 KOG0989 Replication factor C, 97.9 3.5E-05 7.6E-10 62.6 7.3 153 23-190 34-201 (346)
129 COG0542 clpA ATP-binding subun 97.9 9.2E-05 2E-09 67.5 10.6 112 24-147 490-620 (786)
130 PRK09183 transposase/IS protei 97.9 9E-06 2E-10 65.6 3.7 90 62-159 103-205 (259)
131 KOG0733 Nuclear AAA ATPase (VC 97.9 3.4E-05 7.3E-10 67.9 7.2 67 59-132 221-294 (802)
132 PF02562 PhoH: PhoH-like prote 97.9 2.9E-05 6.2E-10 60.3 6.1 101 42-157 9-153 (205)
133 PF05621 TniB: Bacterial TniB 97.9 2.7E-05 5.9E-10 63.5 6.2 97 24-131 33-156 (302)
134 COG0542 clpA ATP-binding subun 97.9 7.4E-05 1.6E-09 68.1 9.3 146 24-188 169-344 (786)
135 PRK07399 DNA polymerase III su 97.9 0.00017 3.8E-09 59.7 10.9 150 26-190 5-195 (314)
136 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00011 2.4E-09 64.3 10.2 128 60-190 258-405 (489)
137 TIGR03346 chaperone_ClpB ATP-d 97.9 6.5E-05 1.4E-09 70.2 9.2 125 24-159 564-717 (852)
138 COG1875 NYN ribonuclease and A 97.9 6E-05 1.3E-09 62.7 7.8 36 121-159 352-387 (436)
139 COG2884 FtsE Predicted ATPase 97.9 8.1E-05 1.7E-09 56.8 7.7 56 112-167 147-204 (223)
140 PHA00729 NTP-binding motif con 97.9 8.5E-05 1.9E-09 58.4 8.1 69 61-129 17-91 (226)
141 PRK07952 DNA replication prote 97.9 4.1E-05 9E-10 61.1 6.4 93 61-159 99-204 (244)
142 PRK11034 clpA ATP-dependent Cl 97.9 6.4E-05 1.4E-09 69.1 8.4 124 24-158 457-606 (758)
143 PRK08118 topology modulation p 97.9 2.8E-05 6E-10 58.6 5.1 65 62-130 2-68 (167)
144 KOG2543 Origin recognition com 97.8 0.00032 6.9E-09 58.8 11.5 153 23-189 4-192 (438)
145 PRK07261 topology modulation p 97.8 1.6E-05 3.4E-10 60.2 3.5 65 63-130 2-67 (171)
146 PRK06835 DNA replication prote 97.8 4E-05 8.8E-10 63.8 6.2 92 62-159 184-288 (329)
147 PF14532 Sigma54_activ_2: Sigm 97.8 2E-05 4.4E-10 57.3 3.8 86 62-159 22-109 (138)
148 COG4618 ArpD ABC-type protease 97.8 9E-05 2E-09 64.1 8.1 24 62-85 363-386 (580)
149 KOG2170 ATPase of the AAA+ sup 97.8 0.00032 7E-09 57.0 10.8 89 57-145 106-203 (344)
150 COG1222 RPT1 ATP-dependent 26S 97.8 0.00045 9.7E-09 57.5 11.5 126 57-190 181-335 (406)
151 TIGR01243 CDC48 AAA family ATP 97.8 0.0001 2.3E-09 67.8 8.7 124 60-190 486-635 (733)
152 PF13207 AAA_17: AAA domain; P 97.8 1.5E-05 3.1E-10 56.4 2.5 23 63-85 1-23 (121)
153 CHL00095 clpC Clp protease ATP 97.8 0.00011 2.3E-09 68.5 8.7 124 24-159 508-661 (821)
154 TIGR01243 CDC48 AAA family ATP 97.8 8.2E-05 1.8E-09 68.5 7.7 123 60-189 211-358 (733)
155 TIGR02902 spore_lonB ATP-depen 97.8 7.8E-05 1.7E-09 66.1 7.1 43 26-83 66-108 (531)
156 PRK06921 hypothetical protein; 97.7 6.3E-05 1.4E-09 60.9 5.8 26 61-86 117-142 (266)
157 PRK06696 uridine kinase; Valid 97.7 4.9E-05 1.1E-09 59.9 4.9 42 40-85 5-46 (223)
158 PRK06871 DNA polymerase III su 97.7 0.00092 2E-08 55.6 12.6 141 42-189 11-178 (325)
159 COG2255 RuvB Holliday junction 97.7 3.8E-05 8.2E-10 61.9 4.0 150 23-190 24-194 (332)
160 smart00763 AAA_PrkA PrkA AAA d 97.7 2.6E-05 5.7E-10 65.3 3.1 53 26-87 52-104 (361)
161 PRK06762 hypothetical protein; 97.7 0.0002 4.2E-09 53.6 7.5 24 62-85 3-26 (166)
162 KOG2004 Mitochondrial ATP-depe 97.7 5E-05 1.1E-09 68.0 4.7 152 38-190 416-596 (906)
163 PF13604 AAA_30: AAA domain; P 97.7 7.3E-05 1.6E-09 57.8 5.2 85 62-156 19-127 (196)
164 PLN00020 ribulose bisphosphate 97.7 9.8E-05 2.1E-09 62.0 5.9 66 59-131 146-223 (413)
165 PRK06090 DNA polymerase III su 97.7 0.00083 1.8E-08 55.8 11.4 141 42-189 12-179 (319)
166 PRK12723 flagellar biosynthesi 97.7 0.00037 8E-09 59.3 9.5 26 60-85 173-198 (388)
167 PRK11331 5-methylcytosine-spec 97.7 9.2E-05 2E-09 63.8 5.8 35 42-85 184-218 (459)
168 KOG0744 AAA+-type ATPase [Post 97.6 6.8E-05 1.5E-09 61.5 4.5 65 61-130 177-260 (423)
169 PF13671 AAA_33: AAA domain; P 97.6 0.00014 3.1E-09 52.7 5.9 84 63-148 1-96 (143)
170 PF00448 SRP54: SRP54-type pro 97.6 6.5E-05 1.4E-09 58.1 4.2 25 61-85 1-25 (196)
171 PRK06964 DNA polymerase III su 97.6 0.0029 6.3E-08 53.1 14.3 71 119-189 131-203 (342)
172 PRK11889 flhF flagellar biosyn 97.6 0.00028 6E-09 60.0 8.0 26 60-85 240-265 (436)
173 PRK08699 DNA polymerase III su 97.6 0.0011 2.3E-08 55.3 11.4 129 60-189 20-184 (325)
174 PHA02244 ATPase-like protein 97.6 0.00028 6E-09 59.4 7.8 103 42-159 109-230 (383)
175 KOG0730 AAA+-type ATPase [Post 97.6 0.00027 5.8E-09 62.8 8.0 126 59-191 466-616 (693)
176 COG2812 DnaX DNA polymerase II 97.6 0.00015 3.3E-09 63.4 6.4 158 17-190 7-191 (515)
177 PRK08769 DNA polymerase III su 97.6 0.00051 1.1E-08 57.1 9.1 141 42-189 13-184 (319)
178 PRK07993 DNA polymerase III su 97.6 0.00086 1.9E-08 56.1 10.5 141 42-189 11-179 (334)
179 PRK04296 thymidine kinase; Pro 97.6 0.00025 5.5E-09 54.5 6.8 97 62-161 3-117 (190)
180 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 0.00034 7.3E-09 53.1 7.4 24 63-86 1-24 (183)
181 KOG0731 AAA+-type ATPase conta 97.6 0.00074 1.6E-08 61.4 10.6 146 39-191 320-496 (774)
182 PF06309 Torsin: Torsin; Inte 97.6 7E-05 1.5E-09 53.4 3.3 85 26-118 26-114 (127)
183 PF00158 Sigma54_activat: Sigm 97.6 0.00013 2.7E-09 55.1 4.9 92 62-159 23-143 (168)
184 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00069 1.5E-08 50.9 8.8 99 62-164 28-152 (166)
185 KOG0991 Replication factor C, 97.6 0.00011 2.4E-09 57.8 4.5 103 23-141 25-134 (333)
186 cd03228 ABCC_MRP_Like The MRP 97.6 0.00052 1.1E-08 51.7 8.1 104 62-165 29-160 (171)
187 cd03247 ABCC_cytochrome_bd The 97.5 0.00063 1.4E-08 51.5 8.5 103 62-164 29-161 (178)
188 PF10443 RNA12: RNA12 protein; 97.5 0.0004 8.7E-09 59.2 7.7 69 121-190 149-229 (431)
189 PRK05703 flhF flagellar biosyn 97.5 0.00037 8E-09 60.1 7.7 24 61-84 221-244 (424)
190 COG0572 Udk Uridine kinase [Nu 97.5 0.00018 4E-09 56.1 5.2 63 59-121 6-85 (218)
191 PRK14527 adenylate kinase; Pro 97.5 0.00036 7.8E-09 53.5 6.8 26 60-85 5-30 (191)
192 cd03214 ABC_Iron-Siderophores_ 97.5 0.00045 9.7E-09 52.5 7.2 103 62-164 26-162 (180)
193 COG1136 SalX ABC-type antimicr 97.5 0.00068 1.5E-08 53.3 8.3 56 112-167 152-210 (226)
194 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00011 2.3E-09 62.1 4.0 98 59-159 60-166 (362)
195 PRK00771 signal recognition pa 97.5 0.0013 2.9E-08 56.8 10.8 28 59-86 93-120 (437)
196 PF04665 Pox_A32: Poxvirus A32 97.5 0.00027 5.8E-09 56.2 5.8 27 61-87 13-39 (241)
197 cd01131 PilT Pilus retraction 97.5 0.00034 7.3E-09 54.2 6.3 99 62-165 2-114 (198)
198 PRK07667 uridine kinase; Provi 97.5 0.00018 4E-09 55.4 4.7 39 42-85 3-41 (193)
199 PRK14974 cell division protein 97.5 0.0021 4.5E-08 53.8 11.3 25 60-84 139-163 (336)
200 COG0396 sufC Cysteine desulfur 97.5 0.0006 1.3E-08 53.5 7.4 50 119-170 161-214 (251)
201 PRK03839 putative kinase; Prov 97.5 0.00021 4.6E-09 54.2 4.9 27 63-89 2-28 (180)
202 cd03216 ABC_Carb_Monos_I This 97.4 0.00052 1.1E-08 51.4 6.8 103 62-164 27-146 (163)
203 PRK00279 adk adenylate kinase; 97.4 0.00039 8.4E-09 54.4 6.4 25 63-87 2-26 (215)
204 PRK10733 hflB ATP-dependent me 97.4 0.00073 1.6E-08 61.4 8.9 122 62-190 186-335 (644)
205 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.00067 1.5E-08 54.2 7.5 50 113-164 150-203 (254)
206 COG1124 DppF ABC-type dipeptid 97.4 0.00073 1.6E-08 53.4 7.6 23 62-84 34-56 (252)
207 PF07693 KAP_NTPase: KAP famil 97.4 0.0019 4.1E-08 53.5 10.6 43 42-88 5-47 (325)
208 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0012 2.6E-08 58.5 9.5 124 60-190 544-692 (802)
209 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00065 1.4E-08 49.8 6.9 97 62-164 27-131 (144)
210 cd03246 ABCC_Protease_Secretio 97.4 0.00068 1.5E-08 51.2 7.2 103 62-164 29-160 (173)
211 PRK13531 regulatory ATPase Rav 97.4 0.00028 6E-09 61.4 5.5 154 12-189 10-193 (498)
212 PRK15455 PrkA family serine pr 97.4 0.00013 2.8E-09 64.5 3.5 50 27-85 78-127 (644)
213 COG0470 HolB ATPase involved i 97.4 0.00062 1.3E-08 56.2 7.4 134 42-180 10-171 (325)
214 cd01128 rho_factor Transcripti 97.4 0.00026 5.6E-09 56.8 4.9 27 61-87 16-42 (249)
215 PF13238 AAA_18: AAA domain; P 97.4 0.00012 2.6E-09 51.9 2.6 22 64-85 1-22 (129)
216 COG0464 SpoVK ATPases of the A 97.4 0.00088 1.9E-08 59.0 8.3 129 59-190 274-423 (494)
217 KOG0734 AAA+-type ATPase conta 97.4 0.00097 2.1E-08 58.3 8.2 86 42-131 316-407 (752)
218 TIGR02974 phageshock_pspF psp 97.4 0.0015 3.2E-08 54.6 9.2 119 62-187 23-184 (329)
219 PRK14721 flhF flagellar biosyn 97.4 0.0012 2.6E-08 56.8 8.7 24 60-83 190-213 (420)
220 KOG0924 mRNA splicing factor A 97.4 0.00061 1.3E-08 60.9 7.0 115 62-176 372-529 (1042)
221 PRK08233 hypothetical protein; 97.4 0.00017 3.6E-09 54.6 3.2 25 61-85 3-27 (182)
222 TIGR01817 nifA Nif-specific re 97.3 0.00054 1.2E-08 60.9 6.8 116 25-159 196-340 (534)
223 COG2274 SunT ABC-type bacterio 97.3 0.00095 2.1E-08 61.0 8.5 26 62-87 500-525 (709)
224 cd03263 ABC_subfamily_A The AB 97.3 0.00097 2.1E-08 52.2 7.6 24 62-85 29-52 (220)
225 PRK06067 flagellar accessory p 97.3 0.00073 1.6E-08 53.5 6.7 24 60-83 24-47 (234)
226 TIGR00235 udk uridine kinase. 97.3 0.00025 5.4E-09 55.2 3.9 27 59-85 4-30 (207)
227 COG0563 Adk Adenylate kinase a 97.3 0.00061 1.3E-08 51.9 5.9 24 63-86 2-25 (178)
228 COG1223 Predicted ATPase (AAA+ 97.3 0.0013 2.8E-08 52.7 7.8 152 25-190 121-297 (368)
229 PRK05480 uridine/cytidine kina 97.3 0.0002 4.4E-09 55.7 3.4 27 59-85 4-30 (209)
230 PRK14723 flhF flagellar biosyn 97.3 0.0019 4.1E-08 59.2 9.9 25 61-85 185-209 (767)
231 PRK13539 cytochrome c biogenes 97.3 0.00082 1.8E-08 52.2 6.7 59 115-176 140-200 (207)
232 PRK13695 putative NTPase; Prov 97.3 0.00047 1E-08 52.1 5.2 23 63-85 2-24 (174)
233 COG2607 Predicted ATPase (AAA+ 97.3 0.0026 5.7E-08 50.4 9.3 91 62-159 86-182 (287)
234 PRK15429 formate hydrogenlyase 97.3 0.00075 1.6E-08 61.8 7.4 118 25-159 376-520 (686)
235 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.00066 1.4E-08 50.6 5.8 48 114-161 88-139 (159)
236 TIGR01425 SRP54_euk signal rec 97.3 0.003 6.5E-08 54.4 10.5 27 59-85 98-124 (429)
237 PF00485 PRK: Phosphoribulokin 97.3 0.00021 4.5E-09 55.1 3.1 23 63-85 1-23 (194)
238 PRK09376 rho transcription ter 97.3 0.0005 1.1E-08 58.3 5.6 28 61-88 169-196 (416)
239 PRK14528 adenylate kinase; Pro 97.3 0.00092 2E-08 51.2 6.7 24 62-85 2-25 (186)
240 KOG1969 DNA replication checkp 97.3 0.0006 1.3E-08 61.4 6.3 68 57-130 322-397 (877)
241 COG0488 Uup ATPase components 97.3 0.0017 3.7E-08 57.5 9.1 61 113-176 450-511 (530)
242 TIGR02858 spore_III_AA stage I 97.3 0.0031 6.6E-08 51.2 9.9 113 42-165 98-234 (270)
243 PRK06995 flhF flagellar biosyn 97.3 0.0021 4.6E-08 56.2 9.5 26 60-85 255-280 (484)
244 cd03251 ABCC_MsbA MsbA is an e 97.3 0.0025 5.4E-08 50.3 9.2 50 116-165 152-202 (234)
245 PRK05541 adenylylsulfate kinas 97.3 0.00094 2E-08 50.4 6.6 27 60-86 6-32 (176)
246 PTZ00301 uridine kinase; Provi 97.3 0.0002 4.2E-09 56.0 2.8 26 60-85 2-27 (210)
247 PRK12726 flagellar biosynthesi 97.3 0.004 8.6E-08 52.8 10.6 27 59-85 204-230 (407)
248 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00068 1.5E-08 51.6 5.6 102 62-164 26-136 (177)
249 TIGR03499 FlhF flagellar biosy 97.2 0.0018 3.8E-08 53.0 8.2 26 60-85 193-218 (282)
250 cd03230 ABC_DR_subfamily_A Thi 97.2 0.0021 4.6E-08 48.5 8.1 104 62-165 27-160 (173)
251 PF14516 AAA_35: AAA-like doma 97.2 0.0043 9.3E-08 51.9 10.6 52 20-87 6-57 (331)
252 TIGR00382 clpX endopeptidase C 97.2 0.00045 9.8E-09 59.2 4.8 26 61-86 116-141 (413)
253 PTZ00088 adenylate kinase 1; P 97.2 0.00037 8E-09 55.2 4.0 28 62-89 7-34 (229)
254 PRK04132 replication factor C 97.2 0.0022 4.9E-08 59.5 9.5 120 69-189 574-701 (846)
255 cd03252 ABCC_Hemolysin The ABC 97.2 0.0023 5.1E-08 50.6 8.6 48 118-165 154-202 (237)
256 TIGR03522 GldA_ABC_ATP gliding 97.2 0.0024 5.3E-08 52.6 8.9 24 62-85 29-52 (301)
257 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00025 5.4E-09 53.9 2.7 26 60-85 2-27 (188)
258 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0032 7E-08 49.3 9.0 106 61-166 29-160 (213)
259 PRK09270 nucleoside triphospha 97.2 0.00052 1.1E-08 54.3 4.6 28 59-86 31-58 (229)
260 cd03225 ABC_cobalt_CbiO_domain 97.2 0.0017 3.7E-08 50.5 7.5 24 62-85 28-51 (211)
261 PF00406 ADK: Adenylate kinase 97.2 0.00042 9E-09 51.1 3.8 76 66-142 1-94 (151)
262 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.003 6.5E-08 49.1 8.8 103 61-167 29-158 (204)
263 cd03264 ABC_drug_resistance_li 97.2 0.0021 4.5E-08 50.0 7.8 22 63-84 27-48 (211)
264 PRK13538 cytochrome c biogenes 97.2 0.0016 3.4E-08 50.5 7.1 23 62-84 28-50 (204)
265 TIGR03864 PQQ_ABC_ATP ABC tran 97.2 0.0015 3.2E-08 51.8 7.0 24 62-85 28-51 (236)
266 TIGR03375 type_I_sec_LssB type 97.2 0.0022 4.8E-08 58.8 9.0 24 62-85 492-515 (694)
267 cd03259 ABC_Carb_Solutes_like 97.2 0.0017 3.8E-08 50.5 7.3 23 62-84 27-49 (213)
268 PF08433 KTI12: Chromatin asso 97.2 0.0006 1.3E-08 55.3 4.8 25 62-86 2-26 (270)
269 PRK06547 hypothetical protein; 97.2 0.00066 1.4E-08 51.4 4.7 26 60-85 14-39 (172)
270 KOG1514 Origin recognition com 97.2 0.0043 9.3E-08 55.8 10.3 119 23-156 394-545 (767)
271 cd03283 ABC_MutS-like MutS-lik 97.2 0.0017 3.7E-08 50.3 7.1 103 62-166 26-154 (199)
272 PRK11608 pspF phage shock prot 97.2 0.0006 1.3E-08 56.9 4.8 48 24-84 5-52 (326)
273 PRK12724 flagellar biosynthesi 97.2 0.0013 2.9E-08 56.3 6.9 26 60-85 222-247 (432)
274 PRK13657 cyclic beta-1,2-gluca 97.2 0.0023 5E-08 57.5 8.8 24 62-85 362-385 (588)
275 KOG2228 Origin recognition com 97.2 0.0053 1.1E-07 50.9 10.0 167 13-190 11-219 (408)
276 PRK11176 lipid transporter ATP 97.2 0.0021 4.5E-08 57.7 8.5 25 62-86 370-394 (582)
277 KOG2227 Pre-initiation complex 97.2 0.0024 5.2E-08 54.9 8.3 153 23-190 148-338 (529)
278 COG1618 Predicted nucleotide k 97.1 0.00026 5.7E-09 52.5 2.2 27 62-88 6-32 (179)
279 cd03369 ABCC_NFT1 Domain 2 of 97.1 0.0033 7.2E-08 48.7 8.4 52 114-165 137-189 (207)
280 PRK02496 adk adenylate kinase; 97.1 0.0016 3.5E-08 49.5 6.6 23 63-85 3-25 (184)
281 PRK10867 signal recognition pa 97.1 0.0026 5.5E-08 55.0 8.4 28 59-86 98-125 (433)
282 cd03226 ABC_cobalt_CbiO_domain 97.1 0.0033 7.3E-08 48.6 8.3 24 62-85 27-50 (205)
283 cd03229 ABC_Class3 This class 97.1 0.002 4.2E-08 48.9 6.9 103 62-164 27-165 (178)
284 cd03269 ABC_putative_ATPase Th 97.1 0.0021 4.5E-08 49.9 7.2 24 62-85 27-50 (210)
285 cd02019 NK Nucleoside/nucleoti 97.1 0.00031 6.7E-09 44.8 2.1 22 63-84 1-22 (69)
286 cd03243 ABC_MutS_homologs The 97.1 0.0022 4.7E-08 49.7 7.2 104 62-167 30-158 (202)
287 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.0024 5.2E-08 49.4 7.4 103 62-164 27-168 (200)
288 cd03237 ABC_RNaseL_inhibitor_d 97.1 0.0019 4.2E-08 51.7 7.1 25 61-85 25-49 (246)
289 PRK13540 cytochrome c biogenes 97.1 0.0022 4.7E-08 49.5 7.1 24 62-85 28-51 (200)
290 TIGR02868 CydC thiol reductant 97.1 0.0027 6E-08 56.3 8.7 25 61-85 361-385 (529)
291 cd03253 ABCC_ATM1_transporter 97.1 0.0032 6.9E-08 49.8 8.2 52 114-165 149-201 (236)
292 TIGR00959 ffh signal recogniti 97.1 0.0063 1.4E-07 52.6 10.5 26 59-84 97-122 (428)
293 TIGR02203 MsbA_lipidA lipid A 97.1 0.0024 5.2E-08 57.1 8.3 25 61-85 358-382 (571)
294 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.1 0.0044 9.4E-08 49.1 8.9 23 62-84 30-52 (238)
295 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.002 4.4E-08 47.7 6.6 105 62-166 26-146 (157)
296 TIGR00960 3a0501s02 Type II (G 97.1 0.0023 5.1E-08 49.9 7.3 23 62-84 30-52 (216)
297 PRK14722 flhF flagellar biosyn 97.1 0.0022 4.8E-08 54.3 7.5 26 60-85 136-161 (374)
298 TIGR01351 adk adenylate kinase 97.1 0.00091 2E-08 52.1 4.9 23 64-86 2-24 (210)
299 TIGR01188 drrA daunorubicin re 97.1 0.0034 7.4E-08 51.7 8.5 24 62-85 20-43 (302)
300 cd03244 ABCC_MRP_domain2 Domai 97.1 0.004 8.8E-08 48.7 8.5 23 62-84 31-53 (221)
301 smart00534 MUTSac ATPase domai 97.1 0.0017 3.7E-08 49.6 6.2 103 63-166 1-128 (185)
302 PRK00131 aroK shikimate kinase 97.1 0.00042 9.2E-09 51.8 2.7 27 61-87 4-30 (175)
303 cd03238 ABC_UvrA The excision 97.1 0.0034 7.3E-08 47.7 7.6 104 61-164 21-153 (176)
304 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.003 6.6E-08 49.4 7.7 24 62-85 31-54 (220)
305 TIGR03740 galliderm_ABC gallid 97.1 0.0028 6E-08 49.8 7.4 24 62-85 27-50 (223)
306 cd03258 ABC_MetN_methionine_tr 97.1 0.0023 4.9E-08 50.6 6.9 24 62-85 32-55 (233)
307 KOG0735 AAA+-type ATPase [Post 97.1 0.0021 4.6E-08 57.9 7.3 148 36-190 670-848 (952)
308 COG4088 Predicted nucleotide k 97.0 0.0051 1.1E-07 47.7 8.4 119 62-189 2-138 (261)
309 PRK12727 flagellar biosynthesi 97.0 0.0026 5.6E-08 56.1 7.6 25 60-84 349-373 (559)
310 cd03301 ABC_MalK_N The N-termi 97.0 0.0026 5.5E-08 49.5 7.0 24 62-85 27-50 (213)
311 cd03254 ABCC_Glucan_exporter_l 97.0 0.0049 1.1E-07 48.5 8.7 24 62-85 30-53 (229)
312 PRK11160 cysteine/glutathione 97.0 0.003 6.4E-08 56.7 8.3 26 61-86 366-391 (574)
313 COG1120 FepC ABC-type cobalami 97.0 0.0031 6.8E-08 50.6 7.5 27 61-87 28-54 (258)
314 cd03224 ABC_TM1139_LivF_branch 97.0 0.0033 7.2E-08 49.2 7.6 23 62-84 27-49 (222)
315 PRK14531 adenylate kinase; Pro 97.0 0.002 4.3E-08 49.1 6.2 25 63-87 4-28 (183)
316 TIGR00064 ftsY signal recognit 97.0 0.0018 3.9E-08 52.6 6.2 27 59-85 70-96 (272)
317 cd03248 ABCC_TAP TAP, the Tran 97.0 0.0062 1.3E-07 47.8 9.1 23 62-84 41-63 (226)
318 cd03215 ABC_Carb_Monos_II This 97.0 0.0029 6.2E-08 48.1 7.0 103 62-164 27-168 (182)
319 PRK11174 cysteine/glutathione 97.0 0.0045 9.7E-08 55.7 9.2 25 61-85 376-400 (588)
320 TIGR02857 CydD thiol reductant 97.0 0.0036 7.7E-08 55.6 8.5 26 61-86 348-373 (529)
321 PRK14526 adenylate kinase; Pro 97.0 0.0013 2.9E-08 51.4 5.1 22 64-85 3-24 (211)
322 PRK04040 adenylate kinase; Pro 97.0 0.00052 1.1E-08 52.7 2.8 24 62-85 3-26 (188)
323 cd03292 ABC_FtsE_transporter F 97.0 0.0034 7.5E-08 48.8 7.5 23 62-84 28-50 (214)
324 TIGR00767 rho transcription te 97.0 0.00097 2.1E-08 56.8 4.6 26 62-87 169-194 (415)
325 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.0 0.0035 7.5E-08 49.4 7.5 24 62-85 49-72 (224)
326 PRK10908 cell division protein 97.0 0.0034 7.4E-08 49.2 7.5 23 62-84 29-51 (222)
327 PF07728 AAA_5: AAA domain (dy 97.0 0.00053 1.1E-08 49.7 2.6 22 64-85 2-23 (139)
328 PRK14738 gmk guanylate kinase; 97.0 0.00073 1.6E-08 52.6 3.5 25 60-84 12-36 (206)
329 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.0053 1.2E-07 48.4 8.5 105 60-167 29-160 (222)
330 PRK13650 cbiO cobalt transport 97.0 0.0025 5.3E-08 52.0 6.8 24 62-85 34-57 (279)
331 TIGR01277 thiQ thiamine ABC tr 97.0 0.0036 7.9E-08 48.8 7.5 24 62-85 25-48 (213)
332 cd01428 ADK Adenylate kinase ( 97.0 0.0035 7.5E-08 47.8 7.2 23 64-86 2-24 (194)
333 PRK10751 molybdopterin-guanine 97.0 0.0009 2E-08 50.6 3.8 29 59-87 4-32 (173)
334 TIGR03608 L_ocin_972_ABC putat 97.0 0.0035 7.6E-08 48.4 7.3 23 62-84 25-47 (206)
335 PRK09544 znuC high-affinity zi 97.0 0.0028 6.1E-08 50.8 6.9 24 62-85 31-54 (251)
336 PRK11248 tauB taurine transpor 97.0 0.0024 5.3E-08 51.3 6.5 24 62-85 28-51 (255)
337 cd03268 ABC_BcrA_bacitracin_re 97.0 0.0027 5.9E-08 49.2 6.6 23 62-84 27-49 (208)
338 TIGR02788 VirB11 P-type DNA tr 97.0 0.0032 6.9E-08 52.1 7.2 98 62-164 145-257 (308)
339 KOG0735 AAA+-type ATPase [Post 97.0 0.00093 2E-08 60.1 4.2 70 60-131 430-505 (952)
340 KOG0927 Predicted transporter 97.0 0.0036 7.9E-08 54.8 7.7 55 113-168 232-287 (614)
341 TIGR01650 PD_CobS cobaltochela 97.0 0.0074 1.6E-07 50.2 9.3 37 42-87 54-90 (327)
342 cd03231 ABC_CcmA_heme_exporter 96.9 0.004 8.7E-08 48.1 7.3 24 62-85 27-50 (201)
343 cd03267 ABC_NatA_like Similar 96.9 0.0037 7.9E-08 49.6 7.2 24 62-85 48-71 (236)
344 PRK05022 anaerobic nitric oxid 96.9 0.0014 3E-08 58.0 5.2 50 23-85 185-234 (509)
345 cd00227 CPT Chloramphenicol (C 96.9 0.00062 1.3E-08 51.5 2.6 24 62-85 3-26 (175)
346 PRK13543 cytochrome c biogenes 96.9 0.0039 8.5E-08 48.7 7.2 24 62-85 38-61 (214)
347 TIGR01193 bacteriocin_ABC ABC- 96.9 0.0046 1E-07 56.9 8.7 25 62-86 501-525 (708)
348 cd03218 ABC_YhbG The ABC trans 96.9 0.0044 9.5E-08 48.8 7.6 23 62-84 27-49 (232)
349 COG1126 GlnQ ABC-type polar am 96.9 0.0065 1.4E-07 47.4 8.1 56 112-167 146-203 (240)
350 TIGR03263 guanyl_kin guanylate 96.9 0.00078 1.7E-08 50.9 3.1 24 62-85 2-25 (180)
351 cd03266 ABC_NatA_sodium_export 96.9 0.0037 7.9E-08 48.8 7.0 24 62-85 32-55 (218)
352 PRK11153 metN DL-methionine tr 96.9 0.004 8.6E-08 52.3 7.6 24 62-85 32-55 (343)
353 COG2401 ABC-type ATPase fused 96.9 0.0017 3.7E-08 55.3 5.3 59 112-170 517-578 (593)
354 TIGR02322 phosphon_PhnN phosph 96.9 0.00073 1.6E-08 51.1 2.9 24 62-85 2-25 (179)
355 COG1116 TauB ABC-type nitrate/ 96.9 0.003 6.5E-08 50.2 6.4 24 62-85 30-53 (248)
356 KOG0742 AAA+-type ATPase [Post 96.9 0.0059 1.3E-07 52.0 8.4 90 36-130 361-453 (630)
357 cd02023 UMPK Uridine monophosp 96.9 0.00056 1.2E-08 52.7 2.3 23 63-85 1-23 (198)
358 cd03245 ABCC_bacteriocin_expor 96.9 0.0075 1.6E-07 47.1 8.7 24 61-84 30-53 (220)
359 COG3903 Predicted ATPase [Gene 96.9 0.00014 3E-09 61.4 -1.2 121 60-190 13-155 (414)
360 COG4608 AppF ABC-type oligopep 96.9 0.0033 7.1E-08 50.6 6.6 107 61-167 39-177 (268)
361 cd02021 GntK Gluconate kinase 96.9 0.00062 1.3E-08 49.9 2.4 23 63-85 1-23 (150)
362 PRK13652 cbiO cobalt transport 96.9 0.004 8.6E-08 50.7 7.3 24 62-85 31-54 (277)
363 cd03300 ABC_PotA_N PotA is an 96.9 0.0046 1E-07 48.9 7.5 25 62-86 27-51 (232)
364 PRK13537 nodulation ABC transp 96.9 0.0052 1.1E-07 50.8 8.1 24 62-85 34-57 (306)
365 TIGR01846 type_I_sec_HlyB type 96.9 0.006 1.3E-07 56.0 9.2 25 62-86 484-508 (694)
366 PF01583 APS_kinase: Adenylyls 96.9 0.00079 1.7E-08 50.0 2.9 28 61-88 2-29 (156)
367 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0017 3.7E-08 47.0 4.5 25 62-86 23-47 (133)
368 COG5635 Predicted NTPase (NACH 96.9 0.00041 9E-09 64.7 1.6 119 61-182 222-370 (824)
369 PF00910 RNA_helicase: RNA hel 96.9 0.00051 1.1E-08 47.7 1.7 22 64-85 1-22 (107)
370 cd03298 ABC_ThiQ_thiamine_tran 96.9 0.0041 8.9E-08 48.3 7.1 24 62-85 25-48 (211)
371 PRK13647 cbiO cobalt transport 96.9 0.0044 9.6E-08 50.3 7.5 24 62-85 32-55 (274)
372 PRK10771 thiQ thiamine transpo 96.9 0.0045 9.8E-08 48.9 7.3 23 62-84 26-48 (232)
373 PRK07132 DNA polymerase III su 96.9 0.075 1.6E-06 43.8 14.7 139 42-189 5-161 (299)
374 TIGR00554 panK_bact pantothena 96.9 0.0019 4.2E-08 52.9 5.3 23 59-81 60-82 (290)
375 COG1102 Cmk Cytidylate kinase 96.9 0.00061 1.3E-08 50.6 2.1 27 63-89 2-28 (179)
376 PRK00625 shikimate kinase; Pro 96.9 0.00067 1.5E-08 51.4 2.4 24 63-86 2-25 (173)
377 COG4181 Predicted ABC-type tra 96.9 0.0085 1.8E-07 45.3 8.1 55 112-167 156-214 (228)
378 PRK06217 hypothetical protein; 96.9 0.00069 1.5E-08 51.6 2.4 25 63-87 3-27 (183)
379 cd01133 F1-ATPase_beta F1 ATP 96.9 0.00046 9.9E-09 55.9 1.4 28 61-88 69-96 (274)
380 COG1131 CcmA ABC-type multidru 96.9 0.0042 9.1E-08 51.1 7.1 25 62-86 32-56 (293)
381 KOG0736 Peroxisome assembly fa 96.8 0.0034 7.4E-08 57.1 6.9 83 42-131 681-775 (953)
382 cd02025 PanK Pantothenate kina 96.8 0.00066 1.4E-08 53.5 2.2 23 63-85 1-23 (220)
383 PRK00889 adenylylsulfate kinas 96.8 0.0012 2.5E-08 49.9 3.5 26 60-85 3-28 (175)
384 TIGR00968 3a0106s01 sulfate AB 96.8 0.0045 9.7E-08 49.1 7.0 24 62-85 27-50 (237)
385 PRK11432 fbpC ferric transport 96.8 0.0052 1.1E-07 51.8 7.7 25 62-86 33-57 (351)
386 PRK11247 ssuB aliphatic sulfon 96.8 0.0056 1.2E-07 49.3 7.5 24 62-85 39-62 (257)
387 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0046 1E-07 48.7 6.9 105 61-166 31-160 (222)
388 cd02020 CMPK Cytidine monophos 96.8 0.00066 1.4E-08 49.3 2.0 23 63-85 1-23 (147)
389 TIGR02314 ABC_MetN D-methionin 96.8 0.0048 1E-07 51.9 7.3 24 62-85 32-55 (343)
390 PRK10416 signal recognition pa 96.8 0.0028 6.1E-08 52.7 5.9 28 59-86 112-139 (318)
391 COG4133 CcmA ABC-type transpor 96.8 0.0089 1.9E-07 45.7 7.9 49 113-161 141-191 (209)
392 cd02024 NRK1 Nicotinamide ribo 96.8 0.00071 1.5E-08 51.9 2.1 23 63-85 1-23 (187)
393 PRK05439 pantothenate kinase; 96.8 0.0027 5.8E-08 52.5 5.6 27 58-84 83-109 (311)
394 PRK14529 adenylate kinase; Pro 96.8 0.0039 8.4E-08 49.2 6.2 25 64-88 3-27 (223)
395 PRK05973 replicative DNA helic 96.8 0.004 8.7E-08 49.5 6.3 25 60-84 63-87 (237)
396 PRK10790 putative multidrug tr 96.8 0.0075 1.6E-07 54.3 8.8 26 61-86 367-392 (592)
397 cd03240 ABC_Rad50 The catalyti 96.8 0.0069 1.5E-07 47.1 7.5 53 113-165 132-188 (204)
398 TIGR02204 MsbA_rel ABC transpo 96.8 0.004 8.6E-08 55.8 7.0 24 62-85 367-390 (576)
399 COG0465 HflB ATP-dependent Zn 96.8 0.0038 8.3E-08 55.6 6.7 94 26-131 151-253 (596)
400 TIGR01192 chvA glucan exporter 96.8 0.0049 1.1E-07 55.4 7.6 25 61-85 361-385 (585)
401 PRK00300 gmk guanylate kinase; 96.8 0.0011 2.4E-08 51.2 3.1 25 61-85 5-29 (205)
402 PRK14737 gmk guanylate kinase; 96.8 0.0013 2.9E-08 50.4 3.3 26 60-85 3-28 (186)
403 PRK13648 cbiO cobalt transport 96.8 0.0059 1.3E-07 49.4 7.3 24 62-85 36-59 (269)
404 PRK14530 adenylate kinase; Pro 96.8 0.00089 1.9E-08 52.4 2.4 25 63-87 5-29 (215)
405 TIGR03410 urea_trans_UrtE urea 96.8 0.0064 1.4E-07 47.9 7.3 23 62-84 27-49 (230)
406 cd03213 ABCG_EPDR ABCG transpo 96.8 0.0029 6.2E-08 48.7 5.2 100 62-161 36-172 (194)
407 PRK13536 nodulation factor exp 96.8 0.009 2E-07 50.2 8.5 25 61-85 67-91 (340)
408 PRK03846 adenylylsulfate kinas 96.8 0.0014 3E-08 50.6 3.4 27 59-85 22-48 (198)
409 PF07726 AAA_3: ATPase family 96.8 0.00082 1.8E-08 48.2 1.9 23 64-86 2-24 (131)
410 PRK10789 putative multidrug tr 96.8 0.005 1.1E-07 55.2 7.3 25 61-85 341-365 (569)
411 TIGR00958 3a01208 Conjugate Tr 96.8 0.01 2.2E-07 54.7 9.5 25 61-85 507-531 (711)
412 KOG0727 26S proteasome regulat 96.7 0.0036 7.7E-08 50.1 5.6 66 59-131 187-259 (408)
413 cd02028 UMPK_like Uridine mono 96.7 0.0011 2.3E-08 50.5 2.6 23 63-85 1-23 (179)
414 PRK12339 2-phosphoglycerate ki 96.7 0.0013 2.8E-08 50.9 3.1 25 61-85 3-27 (197)
415 PRK12608 transcription termina 96.7 0.0031 6.8E-08 53.3 5.5 38 42-85 120-157 (380)
416 cd00983 recA RecA is a bacter 96.7 0.0036 7.9E-08 52.0 5.9 71 60-130 54-143 (325)
417 PRK13947 shikimate kinase; Pro 96.7 0.001 2.2E-08 49.9 2.4 25 63-87 3-27 (171)
418 PLN02674 adenylate kinase 96.7 0.0055 1.2E-07 49.0 6.7 29 61-89 31-59 (244)
419 PRK13546 teichoic acids export 96.7 0.0072 1.6E-07 48.9 7.5 25 61-85 50-74 (264)
420 TIGR03873 F420-0_ABC_ATP propo 96.7 0.0078 1.7E-07 48.3 7.6 24 62-85 28-51 (256)
421 PF12775 AAA_7: P-loop contain 96.7 0.00066 1.4E-08 55.2 1.4 37 41-85 21-57 (272)
422 PRK09452 potA putrescine/sperm 96.7 0.0047 1E-07 52.5 6.6 25 62-86 41-65 (375)
423 PRK12337 2-phosphoglycerate ki 96.7 0.0028 6E-08 55.0 5.1 27 60-86 254-280 (475)
424 PRK13635 cbiO cobalt transport 96.7 0.0053 1.2E-07 50.0 6.7 24 62-85 34-57 (279)
425 cd01130 VirB11-like_ATPase Typ 96.7 0.0047 1E-07 47.2 6.0 24 62-85 26-49 (186)
426 COG1419 FlhF Flagellar GTP-bin 96.7 0.0072 1.6E-07 51.4 7.5 21 60-80 202-223 (407)
427 TIGR03265 PhnT2 putative 2-ami 96.7 0.0074 1.6E-07 50.9 7.7 25 62-86 31-55 (353)
428 TIGR02012 tigrfam_recA protein 96.7 0.0036 7.7E-08 52.0 5.5 71 60-130 54-143 (321)
429 PLN02200 adenylate kinase fami 96.7 0.0014 3E-08 52.1 3.0 27 60-86 42-68 (234)
430 TIGR01420 pilT_fam pilus retra 96.7 0.0061 1.3E-07 51.2 7.0 96 62-162 123-232 (343)
431 TIGR01288 nodI ATP-binding ABC 96.7 0.01 2.3E-07 48.9 8.2 23 62-84 31-53 (303)
432 TIGR01313 therm_gnt_kin carboh 96.7 0.00099 2.1E-08 49.6 2.0 22 64-85 1-22 (163)
433 PRK11650 ugpC glycerol-3-phosp 96.7 0.0064 1.4E-07 51.4 7.0 24 62-85 31-54 (356)
434 cd00464 SK Shikimate kinase (S 96.7 0.0013 2.7E-08 48.3 2.4 22 64-85 2-23 (154)
435 PF08477 Miro: Miro-like prote 96.7 0.0015 3.3E-08 45.6 2.7 24 64-87 2-25 (119)
436 cd00071 GMPK Guanosine monopho 96.6 0.0014 3E-08 47.7 2.5 23 63-85 1-23 (137)
437 cd03284 ABC_MutS1 MutS1 homolo 96.6 0.0088 1.9E-07 46.9 7.2 104 62-166 31-159 (216)
438 PRK05342 clpX ATP-dependent pr 96.6 0.0051 1.1E-07 52.9 6.3 26 61-86 108-133 (412)
439 TIGR01842 type_I_sec_PrtD type 96.6 0.013 2.8E-07 52.3 9.1 25 61-85 344-368 (544)
440 PRK11000 maltose/maltodextrin 96.6 0.0073 1.6E-07 51.3 7.2 24 62-85 30-53 (369)
441 COG1936 Predicted nucleotide k 96.6 0.0015 3.3E-08 49.0 2.6 20 63-82 2-21 (180)
442 PLN02348 phosphoribulokinase 96.6 0.0016 3.6E-08 55.2 3.1 27 59-85 47-73 (395)
443 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0069 1.5E-07 46.8 6.4 21 62-82 29-49 (200)
444 COG1428 Deoxynucleoside kinase 96.6 0.0015 3.4E-08 50.5 2.7 29 61-89 4-32 (216)
445 PF03205 MobB: Molybdopterin g 96.6 0.0015 3.2E-08 47.7 2.5 26 62-87 1-26 (140)
446 PRK10078 ribose 1,5-bisphospho 96.6 0.0018 4E-08 49.4 3.1 24 62-85 3-26 (186)
447 cd01129 PulE-GspE PulE/GspE Th 96.6 0.008 1.7E-07 48.6 7.0 80 62-143 81-170 (264)
448 PRK13636 cbiO cobalt transport 96.6 0.0075 1.6E-07 49.2 6.9 23 62-84 33-55 (283)
449 PRK13975 thymidylate kinase; P 96.6 0.0016 3.5E-08 49.9 2.8 25 62-86 3-27 (196)
450 TIGR01194 cyc_pep_trnsptr cycl 96.6 0.011 2.3E-07 53.0 8.2 26 61-86 368-393 (555)
451 TIGR02768 TraA_Ti Ti-type conj 96.6 0.0097 2.1E-07 55.1 8.1 93 62-157 369-474 (744)
452 cd02027 APSK Adenosine 5'-phos 96.6 0.0016 3.5E-08 48.0 2.5 23 63-85 1-23 (149)
453 PLN02459 probable adenylate ki 96.6 0.0027 5.8E-08 51.2 3.9 70 62-131 30-119 (261)
454 cd03115 SRP The signal recogni 96.6 0.015 3.3E-07 43.6 8.0 23 63-85 2-24 (173)
455 cd03299 ABC_ModC_like Archeal 96.6 0.0096 2.1E-07 47.1 7.1 24 62-85 26-49 (235)
456 PRK11144 modC molybdate transp 96.6 0.011 2.4E-07 49.8 7.9 24 62-85 25-48 (352)
457 PRK13949 shikimate kinase; Pro 96.6 0.0015 3.2E-08 49.3 2.3 25 63-87 3-27 (169)
458 KOG1532 GTPase XAB1, interacts 96.6 0.0013 2.7E-08 53.1 2.0 32 58-89 16-47 (366)
459 TIGR03796 NHPM_micro_ABC1 NHPM 96.6 0.0091 2E-07 54.9 7.8 25 61-85 505-529 (710)
460 KOG0728 26S proteasome regulat 96.6 0.018 3.8E-07 46.2 8.3 157 16-188 137-329 (404)
461 PRK09354 recA recombinase A; P 96.6 0.009 2E-07 50.2 7.1 72 60-131 59-149 (349)
462 COG0714 MoxR-like ATPases [Gen 96.6 0.0049 1.1E-07 51.5 5.6 48 24-88 23-70 (329)
463 PRK14532 adenylate kinase; Pro 96.6 0.0016 3.5E-08 49.7 2.4 23 64-86 3-25 (188)
464 PF03215 Rad17: Rad17 cell cyc 96.6 0.0023 5E-08 56.6 3.7 44 42-87 28-71 (519)
465 PRK13642 cbiO cobalt transport 96.6 0.0082 1.8E-07 48.8 6.7 23 62-84 34-56 (277)
466 PF02463 SMC_N: RecF/RecN/SMC 96.6 0.0046 9.9E-08 48.4 5.1 47 120-166 158-205 (220)
467 KOG0651 26S proteasome regulat 96.6 0.0039 8.4E-08 51.2 4.7 69 59-131 164-236 (388)
468 PF03266 NTPase_1: NTPase; In 96.5 0.0015 3.2E-08 49.3 2.1 24 64-87 2-25 (168)
469 TIGR01287 nifH nitrogenase iro 96.5 0.0018 3.9E-08 52.5 2.8 24 62-85 1-24 (275)
470 PRK11607 potG putrescine trans 96.5 0.015 3.2E-07 49.6 8.4 24 62-85 46-69 (377)
471 KOG0066 eIF2-interacting prote 96.5 0.0085 1.8E-07 51.6 6.7 25 62-86 614-638 (807)
472 PRK13808 adenylate kinase; Pro 96.5 0.007 1.5E-07 50.5 6.2 24 64-87 3-26 (333)
473 cd03289 ABCC_CFTR2 The CFTR su 96.5 0.015 3.2E-07 47.4 8.0 23 62-84 31-53 (275)
474 PRK05537 bifunctional sulfate 96.5 0.0033 7.2E-08 56.3 4.6 51 23-86 367-417 (568)
475 PF03193 DUF258: Protein of un 96.5 0.0049 1.1E-07 46.1 4.8 34 42-85 26-59 (161)
476 TIGR01818 ntrC nitrogen regula 96.5 0.0096 2.1E-07 51.8 7.3 119 62-187 158-319 (463)
477 KOG1970 Checkpoint RAD17-RFC c 96.5 0.011 2.5E-07 51.9 7.5 57 31-88 81-137 (634)
478 cd03288 ABCC_SUR2 The SUR doma 96.5 0.022 4.7E-07 45.8 8.8 24 62-85 48-71 (257)
479 PRK04182 cytidylate kinase; Pr 96.5 0.0019 4.2E-08 48.5 2.6 23 63-85 2-24 (180)
480 KOG1051 Chaperone HSP104 and r 96.5 0.012 2.7E-07 54.7 8.1 112 24-146 561-686 (898)
481 COG0488 Uup ATPase components 96.5 0.017 3.6E-07 51.4 8.6 55 112-168 163-218 (530)
482 COG0703 AroK Shikimate kinase 96.5 0.0021 4.5E-08 48.4 2.6 28 62-89 3-30 (172)
483 PRK10636 putative ABC transpor 96.5 0.016 3.4E-07 52.8 8.7 24 62-85 339-362 (638)
484 KOG0058 Peptide exporter, ABC 96.5 0.012 2.5E-07 53.3 7.6 22 62-83 495-516 (716)
485 PRK05057 aroK shikimate kinase 96.5 0.0023 5.1E-08 48.3 2.8 24 62-85 5-28 (172)
486 PHA02530 pseT polynucleotide k 96.5 0.0022 4.9E-08 52.5 2.9 24 62-85 3-26 (300)
487 PRK10820 DNA-binding transcrip 96.5 0.0059 1.3E-07 54.2 5.7 47 25-84 204-250 (520)
488 KOG0739 AAA+-type ATPase [Post 96.5 0.0068 1.5E-07 49.6 5.5 91 25-131 133-236 (439)
489 CHL00206 ycf2 Ycf2; Provisiona 96.4 0.026 5.7E-07 56.4 10.2 30 60-89 1629-1658(2281)
490 PF03308 ArgK: ArgK protein; 96.4 0.0042 9.1E-08 49.8 4.2 42 42-88 15-56 (266)
491 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0023 5E-08 47.7 2.6 23 63-85 2-24 (171)
492 COG0541 Ffh Signal recognition 96.4 0.02 4.4E-07 49.0 8.4 51 37-87 74-126 (451)
493 PRK13236 nitrogenase reductase 96.4 0.0033 7.3E-08 51.7 3.7 27 59-85 4-30 (296)
494 PLN02318 phosphoribulokinase/u 96.4 0.0048 1E-07 55.1 4.8 26 60-85 64-89 (656)
495 TIGR01186 proV glycine betaine 96.4 0.017 3.6E-07 49.0 7.9 24 62-85 20-43 (363)
496 TIGR03797 NHPM_micro_ABC2 NHPM 96.4 0.012 2.6E-07 54.0 7.6 27 61-87 479-505 (686)
497 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0033 7.1E-08 43.7 3.1 21 62-82 16-36 (107)
498 TIGR03574 selen_PSTK L-seryl-t 96.4 0.002 4.3E-08 51.6 2.3 23 63-85 1-23 (249)
499 COG0194 Gmk Guanylate kinase [ 96.4 0.003 6.4E-08 48.1 3.0 25 61-85 4-28 (191)
500 PRK13409 putative ATPase RIL; 96.4 0.012 2.7E-07 52.9 7.5 24 62-85 366-389 (590)
No 1
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=5.1e-27 Score=191.25 Aligned_cols=146 Identities=26% Similarity=0.407 Sum_probs=112.4
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH----------------------HHhhhCCCCC
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------------------IHNTISPETA 99 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------------i~~~~~~~~~ 99 (206)
+++|.++|..... +.++|+|+|+||+||||||..++++...+. ++..+.....
T Consensus 5 ~~~l~~~L~~~~~-----~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 5 IEKLKDWLLDNSN-----EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp HHHHHHHHHTTTT-----SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred HHHHHHHhhCCCC-----CeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999988543 779999999999999999999998843222 6666666541
Q ss_pred CC-CCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHHhcCC-CCceeCCCC
Q 039853 100 SA-SDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMGT-MPAYELKKL 177 (206)
Q Consensus 100 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~L 177 (206)
.. ...+.......+.+.|.+++|||||||+| +...|+.+...++....||+||||||+..++..+.. ...+++++|
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVW--DEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE---SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccccccccccccccchhhhccccceeeeeeec--cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12 45678889999999999999999999999 888999998888877889999999999988776543 468999999
Q ss_pred CHHHHHHHHhhccCCCC
Q 039853 178 VNDSCRLIFSQHPSGTR 194 (206)
Q Consensus 178 ~~~~a~~Lf~~~af~~~ 194 (206)
+.++|++||++.++...
T Consensus 158 ~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKE 174 (287)
T ss_dssp -HHHHHHHHHHHHTSHS
T ss_pred ccccccccccccccccc
Confidence 99999999999998655
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.93 E-value=6.7e-26 Score=207.03 Aligned_cols=150 Identities=27% Similarity=0.398 Sum_probs=129.7
Q ss_pred eeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChh-HHH-----------------
Q 039853 28 FARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKT-VNS----------------- 89 (206)
Q Consensus 28 ~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~----------------- 89 (206)
+|.++. ++++.+.|..++. .+++|+||||+||||||+.++|+.. +..
T Consensus 161 VG~e~~--------~~kl~~~L~~d~~-------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~ 225 (889)
T KOG4658|consen 161 VGLETM--------LEKLWNRLMEDDV-------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTR 225 (889)
T ss_pred ccHHHH--------HHHHHHHhccCCC-------CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHH
Confidence 666666 9999999988763 8999999999999999999999987 444
Q ss_pred -----HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHH
Q 039853 90 -----IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 90 -----i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~ 164 (206)
|+..++...........+.++..+.+.|+.+||||||||+| +..+|+.+..++|....||+|++|||+..|+.
T Consensus 226 ~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW--~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~ 303 (889)
T KOG4658|consen 226 KIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIW--EEVDWDKIGVPFPSRENGSKVVLTTRSEEVCG 303 (889)
T ss_pred hHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccc--ccccHHhcCCCCCCccCCeEEEEEeccHhhhh
Confidence 66666654422233345788999999999999999999999 88999999999998889999999999999999
Q ss_pred h-cCCCCceeCCCCCHHHHHHHHhhccCCCC
Q 039853 165 I-MGTMPAYELKKLVNDSCRLIFSQHPSGTR 194 (206)
Q Consensus 165 ~-~~~~~~~~l~~L~~~~a~~Lf~~~af~~~ 194 (206)
. ++....+++..|++++||.||++.||...
T Consensus 304 ~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~ 334 (889)
T KOG4658|consen 304 RAMGVDYPIEVECLTPEEAWDLFQKKVGPNT 334 (889)
T ss_pred ccccCCccccccccCccccHHHHHHhhcccc
Confidence 8 77777899999999999999999998773
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=9.8e-25 Score=206.33 Aligned_cols=179 Identities=14% Similarity=0.089 Sum_probs=131.4
Q ss_pred HHHhhHHHHHHhhhc----cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhc
Q 039853 8 ILSVSIEMLFKKLAA----KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 8 ~~~~~i~~~~~~l~~----~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
++..+.++++.++.. ....++|++.. ++++..+|.... +++++|+||||||+||||||+++|+
T Consensus 163 ~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~--------l~~l~~lL~l~~-----~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 163 MIEEIANDVLGKLNLTPSNDFEDFVGIEDH--------IAKMSSLLHLES-----EEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred HHHHHHHHHHHhhccccCcccccccchHHH--------HHHHHHHHcccc-----CceEEEEEEcCCCCchHHHHHHHHH
Confidence 455566667776653 34578999999 999888875433 3689999999999999999999998
Q ss_pred ChhHHH----HHhh--hCCC---CC--CCCCCC-HHH------------------HHHHHHhhhCCceEEEEEcCCCCCC
Q 039853 84 DKTVNS----IHNT--ISPE---TA--SASDDN-LNS------------------LQVKLKSGLSRKKFQLASGDMWKDK 133 (206)
Q Consensus 84 ~~~~~~----i~~~--~~~~---~~--~~~~~~-~~~------------------~~~~l~~~l~~kr~LlVlDdv~~~~ 133 (206)
+....+ ++.. +... .. ...... ... ....+++.+.++|+||||||+| +
T Consensus 230 ~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~--~ 307 (1153)
T PLN03210 230 RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLD--D 307 (1153)
T ss_pred HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCC--C
Confidence 765433 1110 0000 00 000000 000 0134677788999999999999 8
Q ss_pred cccHHHHHhhcccCCCCcEEEEeCCChHHHHhcCCCCceeCCCCCHHHHHHHHhhccCCCCCCccchh
Q 039853 134 YVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMGTMPAYELKKLVNDSCRLIFSQHPSGTREIVYRRK 201 (206)
Q Consensus 134 ~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~af~~~~~~~~~~ 201 (206)
...|+.+.......++||+||||||+..++..++..++|+++.|+.++||+||+++||+...+.+...
T Consensus 308 ~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~ 375 (1153)
T PLN03210 308 QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFM 375 (1153)
T ss_pred HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHH
Confidence 88999998777767899999999999999987766789999999999999999999998776654433
No 4
>PF05729 NACHT: NACHT domain
Probab=99.37 E-value=5.9e-12 Score=93.91 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=76.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCC---------CCCCCHHHHHHHHHhhh-CC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETAS---------ASDDNLNSLQVKLKSGL-SR 119 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~---------~~~~~~~~~~~~l~~~l-~~ 119 (206)
+++.|+|.+|+||||+++.++.+..... -.+........ ............+...+ ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 5799999999999999998887664332 00000000000 00000000111111222 46
Q ss_pred ceEEEEEcCCCCCCcc-------cHHHHH-hhccc-CCCCcEEEEeCCChHHH---HhcCCCCceeCCCCCHHHHHHHHh
Q 039853 120 KKFQLASGDMWKDKYV-------DWTNQR-VLFVA-VASRRKVIVTTRNQGVT---SIMGTMPAYELKKLVNDSCRLIFS 187 (206)
Q Consensus 120 kr~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~IiiTTR~~~v~---~~~~~~~~~~l~~L~~~~a~~Lf~ 187 (206)
+++++|+|++++.... .+..+. ..++. ..++++++||||..... ........+.+.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 7999999999864321 122323 33332 35789999999987663 333444579999999999999998
Q ss_pred hc
Q 039853 188 QH 189 (206)
Q Consensus 188 ~~ 189 (206)
++
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 76
No 5
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.30 E-value=6.2e-12 Score=104.37 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=99.4
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-HHhh
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-IHNT 93 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-i~~~ 93 (206)
+...+-| .-..++|++.. -+.-..|.+++... .+....+||+||+||||||+.+.......+ .++.
T Consensus 14 LA~rmRP~~lde~vGQ~HL-----lg~~~~lrr~v~~~-------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHL-----LGEGKPLRRAVEAG-------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred hHHHhCCCCHHHhcChHhh-----hCCCchHHHHHhcC-------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 4444444 44456666544 21134555555333 568899999999999999998877654332 1111
Q ss_pred hCCCCCCCCCCCHHHHHHHH-HhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEE--eCCChHHH---HhcC
Q 039853 94 ISPETASASDDNLNSLQVKL-KSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIV--TTRNQGVT---SIMG 167 (206)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~---~~~~ 167 (206)
+ . ....+.....+.- +....+++.+|++|.++..+..+.+.|++.+. .|..|+| ||.|+... ....
T Consensus 82 v---~--~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 82 V---T--SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred c---c--ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhh
Confidence 1 1 1122333333333 23345789999999999888888777766655 7877777 78886643 2223
Q ss_pred CCCceeCCCCCHHHHHHHHhh
Q 039853 168 TMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 168 ~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
...++.+++|+.++-.+++.+
T Consensus 154 R~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred hhheeeeecCCHHHHHHHHHH
Confidence 446899999999999999988
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.3e-10 Score=91.30 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=76.9
Q ss_pred eeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------
Q 039853 27 LFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------------- 89 (206)
Q Consensus 27 ~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------- 89 (206)
|+||+++ ++.|.+++..... +.+.|+|+.|+|||+|++.+.+......
T Consensus 1 F~gR~~e--------l~~l~~~l~~~~~-------~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 65 (234)
T PF01637_consen 1 FFGREKE--------LEKLKELLESGPS-------QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSL 65 (234)
T ss_dssp S-S-HHH--------HHHHHHCHHH--S-------SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHH
T ss_pred CCCHHHH--------HHHHHHHHHhhcC-------cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHH
Confidence 7899999 9999998866533 7899999999999999998876652211
Q ss_pred --HH----------hhhCCCCCC--C------CCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCC------cccHHHHH
Q 039853 90 --IH----------NTISPETAS--A------SDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDK------YVDWTNQR 141 (206)
Q Consensus 90 --i~----------~~~~~~~~~--~------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~ 141 (206)
++ ..+...... . ...........+.+.+. +++++||+|+++... ......+.
T Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~ 145 (234)
T PF01637_consen 66 RSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLR 145 (234)
T ss_dssp HHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHH
Confidence 20 001100000 0 01112222233333332 345999999998433 11122333
Q ss_pred hhccc---CCCCcEEEEeCCChHHHHh--------cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 142 VLFVA---VASRRKVIVTTRNQGVTSI--------MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 142 ~~l~~---~~~gs~IiiTTR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
..+.. ..+-+.|+++|. ..+... .+....+.+++|+.+++++++...
T Consensus 146 ~~~~~~~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 146 SLLDSLLSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKEL 203 (234)
T ss_dssp HHHHH----TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHH
T ss_pred HHHhhccccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHH
Confidence 33333 344444544554 333322 122245999999999999999985
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.15 E-value=4.5e-10 Score=95.63 Aligned_cols=156 Identities=14% Similarity=0.020 Sum_probs=95.5
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.+..++||+++ +++|...|...-. +.....+.|+|++|+|||++++.++++.....
T Consensus 28 ~P~~l~~Re~e--------~~~l~~~l~~~~~---~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 28 VPENLPHREEQ--------IEELAFALRPALR---GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred cCCCCCCHHHH--------HHHHHHHHHHHhC---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 45668899999 8888888743211 12345678999999999999999987653221
Q ss_pred ---------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCC----cccHHHHHhhcccCCCCcE--
Q 039853 90 ---------IHNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDK----YVDWTNQRVLFVAVASRRK-- 152 (206)
Q Consensus 90 ---------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~-- 152 (206)
++.++..........+...+...+.+.+. ++..+||||+++... .+.+..+...+.. .++++
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~ 175 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIG 175 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEE
Confidence 45555432100122345666677777765 456899999998432 2223333332222 22333
Q ss_pred EEEeCCChHHHHhcC-------CCCceeCCCCCHHHHHHHHhhcc
Q 039853 153 VIVTTRNQGVTSIMG-------TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 153 IiiTTR~~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+|.++.+..+..... ....+.+++++.++..+++..++
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 455555443322211 12457899999999999998764
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.02 E-value=4.4e-09 Score=88.64 Aligned_cols=157 Identities=11% Similarity=0.011 Sum_probs=91.4
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-------H------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------S------ 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------~------ 89 (206)
.+..++||+++ ++.|..+|..... +.....+.|+|++|+|||++++.++++.... .
T Consensus 13 ~p~~l~gRe~e--------~~~l~~~l~~~~~---~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 13 VPDRIVHRDEQ--------IEELAKALRPILR---GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCcHHH--------HHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 34578999999 9999988854211 1234678999999999999999998653210 0
Q ss_pred -------------HHhhhCC--CCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCC---cccHHHHHhhc-ccCC
Q 039853 90 -------------IHNTISP--ETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDK---YVDWTNQRVLF-VAVA 148 (206)
Q Consensus 90 -------------i~~~~~~--~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~ 148 (206)
++.++.. ........+.......+.+.+. +++++||||+++... .+.+..+.... ....
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~ 161 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL 161 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC
Confidence 5555521 1100112234455555666663 567899999998542 11122222210 1111
Q ss_pred --CCcEEEEeCCChHHHHhcC-------CCCceeCCCCCHHHHHHHHhhcc
Q 039853 149 --SRRKVIVTTRNQGVTSIMG-------TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 149 --~gs~IiiTTR~~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
....+|.+|.......... ....+.+++.+.++..+++..++
T Consensus 162 ~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 162 DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 2223344444333221111 12458899999999999998764
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=1.9e-08 Score=81.20 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=75.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH-------------------HHhhhCCCCCCCCCCCHHHHHHHHHhh-----
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------------IHNTISPETASASDDNLNSLQVKLKSG----- 116 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------i~~~~~~~~~~~~~~~~~~~~~~l~~~----- 116 (206)
...+.|+|++|+|||||++.+++...... +...++... ...+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~---~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLET---EGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987653111 333333322 222223333333332
Q ss_pred hCCceEEEEEcCCCCCCcccHHHHHhhccc---CCCCcEEEEeCCChHHHHhcC----------CCCceeCCCCCHHHHH
Q 039853 117 LSRKKFQLASGDMWKDKYVDWTNQRVLFVA---VASRRKVIVTTRNQGVTSIMG----------TMPAYELKKLVNDSCR 183 (206)
Q Consensus 117 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~IiiTTR~~~v~~~~~----------~~~~~~l~~L~~~~a~ 183 (206)
..++++++|+|+++..+...++.+...... ......|++|.... ...... ....+.+++|+.++..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 256789999999997666666666533221 12222445555432 211111 1235789999999999
Q ss_pred HHHhhcc
Q 039853 184 LIFSQHP 190 (206)
Q Consensus 184 ~Lf~~~a 190 (206)
+++....
T Consensus 199 ~~l~~~l 205 (269)
T TIGR03015 199 EYIEHRL 205 (269)
T ss_pred HHHHHHH
Confidence 9887653
No 10
>PF13173 AAA_14: AAA domain
Probab=98.99 E-value=8.2e-10 Score=79.59 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=74.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh--HHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT--VNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTN 139 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~ 139 (206)
+++.|.|+.|+|||||++.++.+.. .+.+.-.+.... ..........+.+.+....+..+++||++. ....|..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq--~~~~~~~ 78 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR--DRRLADPDLLEYFLELIKPGKKYIFIDEIQ--YLPDWED 78 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH--HHHHhhhhhHHHHHHhhccCCcEEEEehhh--hhccHHH
Confidence 6899999999999999998876654 111111111100 000000002334444444578899999999 7778888
Q ss_pred HHhhcccCCCCcEEEEeCCChHHHHhc------CCCCceeCCCCCHHHH
Q 039853 140 QRVLFVAVASRRKVIVTTRNQGVTSIM------GTMPAYELKKLVNDSC 182 (206)
Q Consensus 140 l~~~l~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~~~~a 182 (206)
....+.+..+..+|++|+........- +....+++.||+-.|-
T Consensus 79 ~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 79 ALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 887777766677999998886665331 1223678999987763
No 11
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.98 E-value=1.7e-09 Score=92.81 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=88.1
Q ss_pred cCCceeeecccchhhhHHhHHH---HHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEG---TVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETA 99 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~ 99 (206)
.-..++|++.. +.. |.+++... ....+.++|++|+||||||+.+++.....+ ..+....
T Consensus 10 ~l~d~vGq~~~--------v~~~~~L~~~i~~~-------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~--~~l~a~~- 71 (413)
T PRK13342 10 TLDEVVGQEHL--------LGPGKPLRRMIEAG-------RLSSMILWGPPGTGKTTLARIIAGATDAPF--EALSAVT- 71 (413)
T ss_pred CHHHhcCcHHH--------hCcchHHHHHHHcC-------CCceEEEECCCCCCHHHHHHHHHHHhCCCE--EEEeccc-
Confidence 34457888776 544 66666443 345788899999999999999877653321 0000000
Q ss_pred CCCCCCHHHHHHHHHhhh-CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEE--eCCChHHH---HhcCCCCcee
Q 039853 100 SASDDNLNSLQVKLKSGL-SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIV--TTRNQGVT---SIMGTMPAYE 173 (206)
Q Consensus 100 ~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~ 173 (206)
....+.....+...... .+++.+|++|+++..+....+.+...+. .|..++| ||.+.... ........+.
T Consensus 72 -~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~ 147 (413)
T PRK13342 72 -SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFE 147 (413)
T ss_pred -ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeE
Confidence 01111222222222212 3577899999999766666777766655 3444555 45543321 1222235789
Q ss_pred CCCCCHHHHHHHHhhcc
Q 039853 174 LKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 174 l~~L~~~~a~~Lf~~~a 190 (206)
+.+++.++...+|.+.+
T Consensus 148 ~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 148 LKPLSEEDIEQLLKRAL 164 (413)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999999998753
No 12
>PRK06893 DNA replication initiation factor; Validated
Probab=98.96 E-value=1.8e-09 Score=85.54 Aligned_cols=124 Identities=13% Similarity=0.144 Sum_probs=72.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC-cccHHH-
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK-YVDWTN- 139 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~- 139 (206)
+.+.|+|++|+|||+|++++++....+. ..... ............+.+.+. +.-+|++||+|... ...|..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~----~~~~y--~~~~~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~~~ 112 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ----RTAIY--IPLSKSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWELA 112 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC----CCeEE--eeHHHhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHHHHH
Confidence 5789999999999999999987742211 00000 000000111112222332 33589999999532 344553
Q ss_pred HHhhcccC-CCCcEEEE-eCCC---------hHHHHhcCCCCceeCCCCCHHHHHHHHhhccCC
Q 039853 140 QRVLFVAV-ASRRKVIV-TTRN---------QGVTSIMGTMPAYELKKLVNDSCRLIFSQHPSG 192 (206)
Q Consensus 140 l~~~l~~~-~~gs~Iii-TTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~af~ 192 (206)
+...+... ..|+.+|+ |+.. +.+..-+.....+++++++.++.++++++.++.
T Consensus 113 l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~ 176 (229)
T PRK06893 113 IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ 176 (229)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 33333322 23555544 5544 344444444568999999999999999988763
No 13
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.92 E-value=6.9e-09 Score=94.17 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=90.2
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhH---HHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-H
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKRE---EGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-I 90 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-i 90 (206)
+..++.| .-..|+|++.. + ..+.+.+... ....+.++|++|+||||||+.+++.....+ .
T Consensus 18 Laek~RP~tldd~vGQe~i--------i~~~~~L~~~i~~~-------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ 82 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHI--------LGEGRLLRRAIKAD-------RVGSLILYGPPGVGKTTLARIIANHTRAHFSS 82 (725)
T ss_pred hHHhcCCCcHHHhcCcHHH--------hhhhHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHHhcCccee
Confidence 3334443 33457898877 5 3455555433 345678999999999999999987654332 1
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHhhh--CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEE--eCCChHH--H-
Q 039853 91 HNTISPETASASDDNLNSLQVKLKSGL--SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIV--TTRNQGV--T- 163 (206)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v--~- 163 (206)
++... ....+.....+.....+ .+++.+|++|+++..+...++.+...+. .|+.++| ||.+... .
T Consensus 83 lna~~-----~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 83 LNAVL-----AGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ehhhh-----hhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 11110 01111122222222222 2456799999998666666766666554 4555555 4454322 1
Q ss_pred HhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 164 SIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 164 ~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.......++.+++|+.++...++.+.+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHH
Confidence 112223579999999999999998753
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=8.2e-10 Score=90.92 Aligned_cols=148 Identities=18% Similarity=0.071 Sum_probs=85.5
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDD 104 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~ 104 (206)
..|+|++.. ++.|..++..... ....+..+.++|++|+|||+||+.+++...... ..... ....
T Consensus 4 ~~~iG~~~~--------~~~l~~~l~~~~~--~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~--~~~~~----~~~~ 67 (305)
T TIGR00635 4 AEFIGQEKV--------KEQLQLFIEAAKM--RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL--KITSG----PALE 67 (305)
T ss_pred HHHcCHHHH--------HHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE--EEecc----chhc
Confidence 358999999 8888888853221 123456688999999999999999887653321 00000 0111
Q ss_pred CHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcc-------------------cCCCCcEEEEeCCChHHHHh
Q 039853 105 NLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFV-------------------AVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 105 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~-------------------~~~~gs~IiiTTR~~~v~~~ 165 (206)
....+...+.. + +...+|++|+++..+....+.+...+. ...+.+-|..||+...+...
T Consensus 68 ~~~~l~~~l~~-~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 68 KPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSP 145 (305)
T ss_pred CchhHHHHHHh-c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHH
Confidence 12223222222 2 234678888887544433333332221 11234455567776444332
Q ss_pred c--CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 166 M--GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 166 ~--~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. +....+++++++.++..+++.+.+
T Consensus 146 l~sR~~~~~~l~~l~~~e~~~il~~~~ 172 (305)
T TIGR00635 146 LRDRFGIILRLEFYTVEELAEIVSRSA 172 (305)
T ss_pred HHhhcceEEEeCCCCHHHHHHHHHHHH
Confidence 1 112457999999999999998765
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.86 E-value=7.9e-09 Score=86.09 Aligned_cols=150 Identities=17% Similarity=0.058 Sum_probs=86.5
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..|+||+.. ++.+..++..... .+.....+.++|++|+|||+||+.+++....... .... ..
T Consensus 23 ~~~~~vG~~~~--------~~~l~~~l~~~~~--~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~--~~~~----~~ 86 (328)
T PRK00080 23 SLDEFIGQEKV--------KENLKIFIEAAKK--RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR--ITSG----PA 86 (328)
T ss_pred CHHHhcCcHHH--------HHHHHHHHHHHHh--cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE--EEec----cc
Confidence 55679999999 8888777753211 1234567899999999999999998877543210 0000 11
Q ss_pred CCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhccc-------------------CCCCcEEEEeCCChHHH
Q 039853 103 DDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVA-------------------VASRRKVIVTTRNQGVT 163 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~IiiTTR~~~v~ 163 (206)
......+...+ ..+ .+..+|++|+++..+....+.+...+.. ..+.+-|..|++...+.
T Consensus 87 ~~~~~~l~~~l-~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~ 164 (328)
T PRK00080 87 LEKPGDLAAIL-TNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLT 164 (328)
T ss_pred ccChHHHHHHH-Hhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCC
Confidence 11122222222 222 2456888999885443333333222111 01234455567754333
Q ss_pred Hhc--CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 164 SIM--GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 164 ~~~--~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
... +....+++++++.++..+++.+.+
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~~~ 193 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKRSA 193 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 221 112458999999999999999765
No 16
>PLN03025 replication factor C subunit; Provisional
Probab=98.84 E-value=1.3e-08 Score=84.52 Aligned_cols=152 Identities=9% Similarity=0.041 Sum_probs=90.2
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-.+++|.++. ++.|..++.... .+-+.++|++|+||||+|+.+++...-...-..+.. ....+
T Consensus 11 ~l~~~~g~~~~--------~~~L~~~~~~~~-------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e-ln~sd 74 (319)
T PLN03025 11 KLDDIVGNEDA--------VSRLQVIARDGN-------MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE-LNASD 74 (319)
T ss_pred CHHHhcCcHHH--------HHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHHHhcccCccceee-ecccc
Confidence 34457788877 777777765433 345779999999999999988766411100000000 00012
Q ss_pred CCCHHHHHHHHHhhh-------CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHHH-hcCCCCcee
Q 039853 103 DDNLNSLQVKLKSGL-------SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVTS-IMGTMPAYE 173 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~-~~~~~~~~~ 173 (206)
....+.+.+.++... .++.-++++|+++..+......+...+...+..+++++++.. ..+.. .......++
T Consensus 75 ~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 75 DRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred cccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 223334444433221 234679999999977666666676666544556667666543 22211 111224789
Q ss_pred CCCCCHHHHHHHHhhcc
Q 039853 174 LKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 174 l~~L~~~~a~~Lf~~~a 190 (206)
+.+++.++..+.+...+
T Consensus 155 f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 155 FSRLSDQEILGRLMKVV 171 (319)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999888887654
No 17
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.83 E-value=9.4e-09 Score=84.91 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=81.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-HHhhhCCCCCCCCCCCHHHHHHHHHh--hhCCceEEEEEcCCCCCCccc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-IHNTISPETASASDDNLNSLQVKLKS--GLSRKKFQLASGDMWKDKYVD 136 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~kr~LlVlDdv~~~~~~~ 136 (206)
++..+.+||++|.||||||+.+....+... ..-.+.... ....+.....+.-++ .+.++|-.|.+|.++..+..+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ 238 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ 238 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh
Confidence 568899999999999999998877654332 111111111 122233333333332 335678899999998766666
Q ss_pred HHHHHhhcccCCCCcEEEE--eCCChHHHH---hcCCCCceeCCCCCHHHHHHHHhh
Q 039853 137 WTNQRVLFVAVASRRKVIV--TTRNQGVTS---IMGTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 137 ~~~l~~~l~~~~~gs~Iii--TTR~~~v~~---~~~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
.+.|+ |....|+.++| ||.++.... .+....++.|++|+.+.-..++.+
T Consensus 239 QD~fL---P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 239 QDTFL---PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hhccc---ceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 65554 44457887777 888866532 233446899999999998888876
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.83 E-value=2.7e-08 Score=78.28 Aligned_cols=131 Identities=13% Similarity=0.091 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHH---HHHHhhhC
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQ---VKLKSGLS 118 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~l~~~l~ 118 (206)
++.+.+++... ....+.|+|++|+|||+||+.+++...... ... -..+...+. ..+...+.
T Consensus 26 ~~~l~~~~~~~-------~~~~lll~G~~G~GKT~la~~~~~~~~~~~------~~~---~~i~~~~~~~~~~~~~~~~~ 89 (226)
T TIGR03420 26 LAALRQLAAGK-------GDRFLYLWGESGSGKSHLLQAACAAAEERG------KSA---IYLPLAELAQADPEVLEGLE 89 (226)
T ss_pred HHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CcE---EEEeHHHHHHhHHHHHhhcc
Confidence 66666665332 347899999999999999999886643111 000 000111111 12222333
Q ss_pred CceEEEEEcCCCCCCcc-c-HHHHHhhcccC-CCCcEEEEeCCChH---------HHHhcCCCCceeCCCCCHHHHHHHH
Q 039853 119 RKKFQLASGDMWKDKYV-D-WTNQRVLFVAV-ASRRKVIVTTRNQG---------VTSIMGTMPAYELKKLVNDSCRLIF 186 (206)
Q Consensus 119 ~kr~LlVlDdv~~~~~~-~-~~~l~~~l~~~-~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf 186 (206)
. .-+||+||++..+.. . ...+...+... ..+..+|+||+... +...+.....+++++++.++...++
T Consensus 90 ~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 90 Q-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAAL 168 (226)
T ss_pred c-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHH
Confidence 3 348999999854332 2 33344443321 23347888887532 1222222346899999999999988
Q ss_pred hhc
Q 039853 187 SQH 189 (206)
Q Consensus 187 ~~~ 189 (206)
...
T Consensus 169 ~~~ 171 (226)
T TIGR03420 169 QSR 171 (226)
T ss_pred HHH
Confidence 764
No 19
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.81 E-value=6.1e-09 Score=75.29 Aligned_cols=110 Identities=15% Similarity=-0.008 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhCCCCCCCCCCCHHH------HHHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTISPETASASDDNLNS------LQVK 112 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~~~~~~~~~~~~~~------~~~~ 112 (206)
++.+...+.... .+.+.|+|.+|+|||+|++.+++...... +.-...... ....... ....
T Consensus 7 ~~~i~~~~~~~~-------~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~ 76 (151)
T cd00009 7 IEALREALELPP-------PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL---EGLVVAELFGHFLVRLL 76 (151)
T ss_pred HHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh---hhhHHHHHhhhhhHhHH
Confidence 778877775533 36899999999999999999987763111 000000000 0000000 0111
Q ss_pred HHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccC------CCCcEEEEeCCChH
Q 039853 113 LKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAV------ASRRKVIVTTRNQG 161 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~IiiTTR~~~ 161 (206)
.......++.++++|+++.........+...+... ..+..+|+||....
T Consensus 77 ~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 12223456789999999843223333333333322 35778888887644
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.80 E-value=3.9e-08 Score=81.84 Aligned_cols=152 Identities=11% Similarity=0.042 Sum_probs=87.0
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-----H-------HH
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-----S-------IH 91 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----~-------i~ 91 (206)
-..++|++.. ++.+.+++..+. .+.+.++|++|+|||++|+.+++..... . +.
T Consensus 14 ~~~~~g~~~~--------~~~L~~~~~~~~-------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 14 LEDILGQDEV--------VERLSRAVDSPN-------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred HHHhcCCHHH--------HHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 3567899998 889888885443 3468899999999999998876654211 0 11
Q ss_pred hhhCCCC-CCCC------------CCCHHHHHHHHHhh---h--CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEE
Q 039853 92 NTISPET-ASAS------------DDNLNSLQVKLKSG---L--SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKV 153 (206)
Q Consensus 92 ~~~~~~~-~~~~------------~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 153 (206)
....... ..+. ....+.....++.. . ...+-++|+||++..+...+..+...+......+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 0000000 0000 00011111111111 1 234558999999865555555666666544555677
Q ss_pred EEeCCCh-HHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 154 IVTTRNQ-GVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 154 iiTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|+||.+. .+.... .....+.+.+++.++..+++.+.+
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 7776442 222222 222468899999999888887753
No 21
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.79 E-value=1.6e-08 Score=72.66 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=62.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHH-----H--------------------HHhhhCCCCCCCCCCCHHHHHHHHH
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVN-----S--------------------IHNTISPETASASDDNLNSLQVKLK 114 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----~--------------------i~~~~~~~~~~~~~~~~~~~~~~l~ 114 (206)
+.+.+.|+|.+|+|||++++.+++..... . ++..+.... ....+...+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL--KSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS--SSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc--cccCCHHHHHHHHH
Confidence 44789999999999999999998876331 1 666666555 23356677778888
Q ss_pred hhhCCc-eEEEEEcCCCCC-CcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 115 SGLSRK-KFQLASGDMWKD-KYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 115 ~~l~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
+.+... ..+||+|+++.. +...++.+..... ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 888654 459999999965 5455555544433 556677776544
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=3.2e-08 Score=89.07 Aligned_cols=160 Identities=12% Similarity=0.090 Sum_probs=99.8
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..|.-+ .-..++|++.. ++.|.+++..+. -...+.++|..|+||||+|+.+.+...-+.
T Consensus 6 LarKYRPqtFdEVIGQe~V--------v~~L~~aL~~gR------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~ 71 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHV--------VRALTHALDGGR------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ 71 (830)
T ss_pred HHHHhCCCcHHHHcCcHHH--------HHHHHHHHhcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC
Confidence 3344444 45568899999 999999886543 245778999999999999987765442110
Q ss_pred ------HHhhhCCCC-------CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 90 ------IHNTISPET-------ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 90 ------i~~~~~~~~-------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
....+.... ...+....++..+.+... ..++.-++|||+++..+...|+.|+..+.......+
T Consensus 72 PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 72 PCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred CCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 111111000 001122333333333221 124556889999998888888988888876666767
Q ss_pred EEEeCCC-hHHHHhc-CCCCceeCCCCCHHHHHHHHhhc
Q 039853 153 VIVTTRN-QGVTSIM-GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 153 IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|++|.+ ..+..-+ .....+++.+++.++..+.+.+.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~I 190 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERI 190 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHH
Confidence 6666655 3333222 22357999999999998888764
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.5e-07 Score=79.58 Aligned_cols=159 Identities=10% Similarity=0.086 Sum_probs=98.4
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..+.-| .-..++|.+.. ++.+.+.+.... -...+.++|++|+||||+|+.+++......
T Consensus 6 l~~kyrP~~~~~iiGq~~~--------~~~l~~~~~~~~------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~ 71 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHI--------VTAISNGLSLGR------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN 71 (363)
T ss_pred HHHHhCCCchhhccChHHH--------HHHHHHHHHcCC------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 4445444 45678899999 888888886543 246789999999999999998876542110
Q ss_pred ----------HHhhhCCCC---CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 90 ----------IHNTISPET---ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 90 ----------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
+........ ........++.. .+.+.+ .+++-++|+|+++..+...++.+...+.......
T Consensus 72 pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 72 PCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred CCCCCHHHHHHhcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 111100000 000112233332 222222 2456699999999776667888888877666666
Q ss_pred EEEEeCCC-hHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 152 KVIVTTRN-QGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 152 ~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
++|++|.+ ..+... .+....+++.+++.++..+.+...
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~ 190 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYI 190 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence 66666544 333322 222357999999999988887764
No 24
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.77 E-value=2.2e-08 Score=84.63 Aligned_cols=156 Identities=11% Similarity=-0.033 Sum_probs=84.3
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCC-C-----CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhCC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDS-E-----CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTISP 96 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~-~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~~ 96 (206)
++.|+++. +++|.+.+...-. . -+-..++-+.++|++|+|||+||+++++.....+ ....+..
T Consensus 123 di~Gl~~~--------~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 123 DIGGLEEQ--------IREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred HhCChHHH--------HHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45566666 7777776632211 0 0112356799999999999999999987664332 0000000
Q ss_pred CCCCCCCCCHHHHHHHHHhhh-CCceEEEEEcCCCCCC-----------cc---cHHHHHhhccc--CCCCcEEEEeCCC
Q 039853 97 ETASASDDNLNSLQVKLKSGL-SRKKFQLASGDMWKDK-----------YV---DWTNQRVLFVA--VASRRKVIVTTRN 159 (206)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~gs~IiiTTR~ 159 (206)
.. ..........+.+.. ...+.+|++|+++... .. .+..+...+.. ...+..||.||..
T Consensus 195 ~~----~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 195 KY----IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred Hh----hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 00 001111122222222 3456899999987421 11 12222222221 1235667778765
Q ss_pred hHHH-Hh-c---CCCCceeCCCCCHHHHHHHHhhccCCC
Q 039853 160 QGVT-SI-M---GTMPAYELKKLVNDSCRLIFSQHPSGT 193 (206)
Q Consensus 160 ~~v~-~~-~---~~~~~~~l~~L~~~~a~~Lf~~~af~~ 193 (206)
.... .. . +-...+.++..+.++..++|+.++.+.
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~ 309 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM 309 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC
Confidence 4321 11 1 123468899999999999999876544
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=6.1e-08 Score=90.57 Aligned_cols=130 Identities=17% Similarity=0.146 Sum_probs=77.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH------------------HHhhhCCCCC-----------CCCCCCHHHHH
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------------IHNTISPETA-----------SASDDNLNSLQ 110 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------i~~~~~~~~~-----------~~~~~~~~~~~ 110 (206)
..+++.|+|++|.||||++..+..+.. .. ++..+..... .....+...+.
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLF 109 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHH
Confidence 568999999999999999988764332 11 4444421110 00112223333
Q ss_pred HHHHhhhC--CceEEEEEcCCCCCCcccHHHHH-hhcccCCCCcEEEEeCCChHH---HHhcCCCCceeCC----CCCHH
Q 039853 111 VKLKSGLS--RKKFQLASGDMWKDKYVDWTNQR-VLFVAVASRRKVIVTTRNQGV---TSIMGTMPAYELK----KLVND 180 (206)
Q Consensus 111 ~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~-~~l~~~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~----~L~~~ 180 (206)
..+...+. +.+++||+||++..+......+. ..++....+.++|||||...- ...........+. +|+.+
T Consensus 110 ~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~ 189 (903)
T PRK04841 110 AQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQ 189 (903)
T ss_pred HHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHH
Confidence 33333333 57899999999865444444333 334444566788899998421 1111112345555 89999
Q ss_pred HHHHHHhhcc
Q 039853 181 SCRLIFSQHP 190 (206)
Q Consensus 181 ~a~~Lf~~~a 190 (206)
|+.+||....
T Consensus 190 e~~~ll~~~~ 199 (903)
T PRK04841 190 EAQQFFDQRL 199 (903)
T ss_pred HHHHHHHhcc
Confidence 9999998653
No 26
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=5.1e-08 Score=86.78 Aligned_cols=160 Identities=11% Similarity=0.072 Sum_probs=99.8
Q ss_pred HHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH------
Q 039853 17 FKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------ 89 (206)
Q Consensus 17 ~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------ 89 (206)
..+.-| .-..++|++.. .+.|.+++.... -...+.++|++|+||||+|+.+++...-..
T Consensus 6 arKyRPktFddVIGQe~v--------v~~L~~aI~~gr------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~p 71 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHV--------SRALSSALERGR------LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTP 71 (702)
T ss_pred HHHhCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCC
Confidence 334444 45568899999 999999987554 247889999999999999998765542100
Q ss_pred -----HHhhhCCCC-------CCCCCCCHHHHHHHHHh----hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEE
Q 039853 90 -----IHNTISPET-------ASASDDNLNSLQVKLKS----GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKV 153 (206)
Q Consensus 90 -----i~~~~~~~~-------~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 153 (206)
-...+.... ...+....++..+.+.. ...+++-++|+|+++..+...+..++..+.....+.++
T Consensus 72 Cg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 72 CEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred CccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 011111000 00111233333332221 12356678999999987778888888888766556666
Q ss_pred EEeCCC-hHHH-HhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 154 IVTTRN-QGVT-SIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 154 iiTTR~-~~v~-~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|++|.+ ..+. ........+++.+++.++..+.+.+.+
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence 666554 3332 222233579999999999888887643
No 27
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=1.1e-07 Score=83.10 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=98.1
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.-.+++|.+.. ++.|...+.... -...+.++|++|+||||+|+.+++...-..
T Consensus 19 ~f~dliGq~~v--------v~~L~~ai~~~r------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 19 NFAELQGQEVL--------VKVLSYTILNDR------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CHHHhcCcHHH--------HHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 44567888888 888877775543 346899999999999999998876542110
Q ss_pred ------HHhhhCCCC---CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEE-E
Q 039853 90 ------IHNTISPET---ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVI-V 155 (206)
Q Consensus 90 ------i~~~~~~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii-i 155 (206)
+........ ........+++.+.+... +.+++-++|+|+++..+...|..+...+......+.+| .
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 111000000 001122334443332221 23567789999999877888888988887655565554 4
Q ss_pred eCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 156 TTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 156 TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
||+...+...+ .....+++.+++.++..+.+...+
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHH
Confidence 55555554433 223579999999999999988664
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.73 E-value=6.5e-08 Score=79.87 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=88.6
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhCCCCCCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTISPETASA 101 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~~~~~~~ 101 (206)
.+++|++.. ++.+..++.... .+.+.++|.+|+|||++|+.+++...... ..-.+.. .
T Consensus 17 ~~~~g~~~~--------~~~l~~~i~~~~-------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~----~ 77 (319)
T PRK00440 17 DEIVGQEEI--------VERLKSYVKEKN-------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA----S 77 (319)
T ss_pred HHhcCcHHH--------HHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc----c
Confidence 457899888 899888885433 24579999999999999998876542111 0000100 0
Q ss_pred CCCCHHHHHHHHHhhh-----C-CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHH-HHhcCCCCcee
Q 039853 102 SDDNLNSLQVKLKSGL-----S-RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGV-TSIMGTMPAYE 173 (206)
Q Consensus 102 ~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v-~~~~~~~~~~~ 173 (206)
+........+.+.+.. . ..+-++++|+++..+...+..+...+......+.+|+++.. ..+ .........++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 78 DERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred cccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 1112222223332222 1 34668999999865555566677666655556667776643 211 11111224689
Q ss_pred CCCCCHHHHHHHHhhcc
Q 039853 174 LKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 174 l~~L~~~~a~~Lf~~~a 190 (206)
+.+++.++....+.+.+
T Consensus 158 ~~~l~~~ei~~~l~~~~ 174 (319)
T PRK00440 158 FSPLKKEAVAERLRYIA 174 (319)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999888887654
No 29
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.70 E-value=1.3e-08 Score=77.24 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=33.1
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
.|+||+++ ++++...+... .....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e--------~~~l~~~l~~~----~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEE--------IERLRDLLDAA----QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHH--------HHHHHHTTGGT----SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHH--------HHHHHHHHHHH----HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999 99999988521 23466999999999999999999887666443
No 30
>PRK09087 hypothetical protein; Validated
Probab=98.70 E-value=8.2e-08 Score=75.89 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=68.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC--cccHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK--YVDWT 138 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~ 138 (206)
.+.+.|+|.+|+|||+|++.++......+ .+.......+...+.+ -+|++||++... .+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--------------i~~~~~~~~~~~~~~~--~~l~iDDi~~~~~~~~~lf 107 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--------------IHPNEIGSDAANAAAE--GPVLIEDIDAGGFDETGLF 107 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--------------ecHHHcchHHHHhhhc--CeEEEECCCCCCCCHHHHH
Confidence 36789999999999999998776542221 1111111112222222 378889997432 22222
Q ss_pred HHHhhcccCCCCcEEEEeCCC---------hHHHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 139 NQRVLFVAVASRRKVIVTTRN---------QGVTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 139 ~l~~~l~~~~~gs~IiiTTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.+...+. ..|..+|+|++. +++..-+....++++++++.++-.+++++++
T Consensus 108 ~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 108 HLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred HHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2232222 346679998874 2233333444689999999999999999875
No 31
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.69 E-value=1.2e-07 Score=86.96 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=89.6
Q ss_pred HHhhHHHHHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 9 LSVSIEMLFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 9 ~~~~i~~~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
|+....++.....+ .-..++||+++ ++++++.|..... .-+.++|++|+|||++|+.+++....
T Consensus 165 l~~~~~~l~~~~r~~~l~~~igr~~e--------i~~~~~~L~~~~~-------~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 165 LEKYTVDLTEKAKNGKIDPLIGREDE--------LERTIQVLCRRKK-------NNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHhhhHHHHHhcCCCCcccCcHHH--------HHHHHHHHhcCCC-------CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 33344444444443 34578999999 9999988866543 45689999999999999998876522
Q ss_pred HH--------------HHhhhCCCCCCCCCCCHHHHHHHHHhhh-CCceEEEEEcCCCCCC---------cccHHHHHhh
Q 039853 88 NS--------------IHNTISPETASASDDNLNSLQVKLKSGL-SRKKFQLASGDMWKDK---------YVDWTNQRVL 143 (206)
Q Consensus 88 ~~--------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~ 143 (206)
.. +..-+.... ...+.+...+.+.+.+ ..++.+|++|+++... .+..+.+++.
T Consensus 230 ~~~p~~l~~~~~~~~~~~~l~a~~~---~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~ 306 (731)
T TIGR02639 230 GKVPENLKNAKIYSLDMGSLLAGTK---YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA 306 (731)
T ss_pred CCCchhhcCCeEEEecHHHHhhhcc---ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH
Confidence 11 111110000 1112222223333333 3457899999998431 1112334444
Q ss_pred cccCCCCc-EEEE-eCCChHHHH-------hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 144 FVAVASRR-KVIV-TTRNQGVTS-------IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 144 l~~~~~gs-~Iii-TTR~~~v~~-------~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+. .|. ++|- ||+ ..... ..+....+.+++++.++..++++..
T Consensus 307 l~---~g~i~~IgaTt~-~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 307 LS---SGKLRCIGSTTY-EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred Hh---CCCeEEEEecCH-HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 43 343 2333 454 22211 1122357899999999999999853
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=2.1e-07 Score=81.65 Aligned_cols=158 Identities=9% Similarity=0.087 Sum_probs=97.0
Q ss_pred Hhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------
Q 039853 18 KKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------- 89 (206)
Q Consensus 18 ~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------- 89 (206)
.+.-| .-..++|.+.. .+.|..++.... -...+.++|++|+||||+|+.+++......
T Consensus 6 ~KyRP~~~~dvvGq~~v--------~~~L~~~i~~~~------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg 71 (504)
T PRK14963 6 QRARPITFDEVVGQEHV--------KEVLLAALRQGR------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCG 71 (504)
T ss_pred HhhCCCCHHHhcChHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 34444 34457888888 888888876543 235679999999999999988876552110
Q ss_pred -------HHhhhCCCC---CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEE
Q 039853 90 -------IHNTISPET---ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVI 154 (206)
Q Consensus 90 -------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ii 154 (206)
+........ ........+...+ +.+.+ .+++-++|+|+++..+...++.+...+......+.+|
T Consensus 72 ~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~I 150 (504)
T PRK14963 72 ECESCLAVRRGAHPDVLEIDAASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFI 150 (504)
T ss_pred cChhhHHHhcCCCCceEEecccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEE
Confidence 110000000 0011222333222 33322 3466789999999777777888888887655555555
Q ss_pred EeCC-ChHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 155 VTTR-NQGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 155 iTTR-~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
++|. ...+...+ .....+++.+++.++..+.+.+.+
T Consensus 151 l~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 151 LATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred EEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 5543 33332222 223579999999999999998754
No 33
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.3e-07 Score=78.24 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=96.0
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-----H--HHhhhCCCC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-----S--IHNTISPET 98 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----~--i~~~~~~~~ 98 (206)
+++|.+.. ++.+.+++..+. -.+.+.++|+.|+|||++|+.+++..--. + +. .+....
T Consensus 5 ~i~g~~~~--------~~~l~~~~~~~~------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~-~~~~~~ 69 (313)
T PRK05564 5 TIIGHENI--------KNRIKNSIIKNR------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDII-EFKPIN 69 (313)
T ss_pred hccCcHHH--------HHHHHHHHHcCC------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeE-Eecccc
Confidence 46677777 888888885543 34688999999999999999887643100 0 00 000000
Q ss_pred CCCCCCCHHHHHHHHH----hhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHH--HhcCCCCce
Q 039853 99 ASASDDNLNSLQVKLK----SGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVT--SIMGTMPAY 172 (206)
Q Consensus 99 ~~~~~~~~~~~~~~l~----~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~--~~~~~~~~~ 172 (206)
......+++.+.+. .-..+++-++|+|+++..+...++.++..+.....++.+|++|.+.... +.......+
T Consensus 70 --~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 70 --KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred --CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 12233444443332 1223456678888887778888999999999888888888887654321 112223578
Q ss_pred eCCCCCHHHHHHHHhhc
Q 039853 173 ELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 173 ~l~~L~~~~a~~Lf~~~ 189 (206)
++.+++.++....+.+.
T Consensus 148 ~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 148 KLNRLSKEEIEKFISYK 164 (313)
T ss_pred eCCCcCHHHHHHHHHHH
Confidence 99999999988877654
No 34
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.68 E-value=1.4e-07 Score=84.78 Aligned_cols=152 Identities=16% Similarity=0.099 Sum_probs=90.4
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH----------H---
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN----------S--- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------~--- 89 (206)
.-..++|+... ++.+.+.+... ....+.|+|++|+||||||+.+++..+.. +
T Consensus 152 ~~~~iiGqs~~--------~~~l~~~ia~~-------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 152 AFSEIVGQERA--------IKALLAKVASP-------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cHHhceeCcHH--------HHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 44568899998 88777776433 23579999999999999999887544210 0
Q ss_pred -----------HHhhhCCCC-----------------------------------CCCCCCCHHHHHHHHHhhhCCceEE
Q 039853 90 -----------IHNTISPET-----------------------------------ASASDDNLNSLQVKLKSGLSRKKFQ 123 (206)
Q Consensus 90 -----------i~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~l~~kr~L 123 (206)
+...+.... .+....+ ...+..+.+.+++++++
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVE 295 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEE
Confidence 000000000 0000011 12455666666667777
Q ss_pred EEEcCCCCCCcccHHHHHhhcccCCCCcEEEE--eCCChHH-HHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 124 LASGDMWKDKYVDWTNQRVLFVAVASRRKVIV--TTRNQGV-TSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 124 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v-~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
++.|+.|..+...|..++..+....+...+++ ||++... .... .....+.+.+++.++.++++.+.+
T Consensus 296 ~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 296 FSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred eecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 77666654444556666666665555555666 6665331 1111 122367899999999999999864
No 35
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=8.2e-08 Score=83.50 Aligned_cols=160 Identities=12% Similarity=0.135 Sum_probs=94.9
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..++-| .-..++|++.. .+.|...+..+. -.+.+.++|++|+||||+|+.+++......
T Consensus 4 l~~kyRP~~~~divGq~~i--------~~~L~~~i~~~~------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~ 69 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHV--------KKLIINALKKNS------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVE 69 (472)
T ss_pred hHHHHCCCCHHHccCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCC
Confidence 3344444 55668898887 777777775443 235689999999999999998866542110
Q ss_pred ------HHhhhCC--C--C---CCCCCCCHHHHHHHHHhh-----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 90 ------IHNTISP--E--T---ASASDDNLNSLQVKLKSG-----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 90 ------i~~~~~~--~--~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
....+.. . . ........+.+. .+.+. +.+++-++|+|+++..+....+.+...+.......
T Consensus 70 pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 70 PCNECRACRSIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred CCcccHHHHHHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 0000000 0 0 001122233332 23222 23456799999998666666777777776544444
Q ss_pred EEEE-eCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 152 KVIV-TTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 152 ~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.+|+ ||....+.... .....+.+.+++.++....+.+.+
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence 4443 44333333322 233578999999999888887754
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.7e-07 Score=85.94 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=100.4
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..+.-| .-..++|.+.. ++.|.+++..+. -...+.++|++|+||||+|+.+++......
T Consensus 6 LaeKyRP~tFddIIGQe~I--------v~~LknaI~~~r------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~ 71 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHV--------LHALTNALTQQR------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT 71 (944)
T ss_pred HHHHhCCCCHHHhcCcHHH--------HHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC
Confidence 3445554 44678899999 888988886543 245678999999999999999886653210
Q ss_pred ----------HHhhhCC--C-CCCCCCCCHHHHHH---HHHh-hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 90 ----------IHNTISP--E-TASASDDNLNSLQV---KLKS-GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 90 ----------i~~~~~~--~-~~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
+...... . .........+.+.+ .+.. ...+++-++|+|+++..+...++.|+..+.......+
T Consensus 72 pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 72 PCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred CCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 1100000 0 00001122233322 2211 1235677999999998888888888888876555555
Q ss_pred EEE-eCCChHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 153 VIV-TTRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 153 Iii-TTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|+ ||....+... ......|++.+|+.++..+.+.+.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~i 190 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHI 190 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHH
Confidence 555 5554544422 222357999999999999888764
No 37
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=8.5e-08 Score=85.92 Aligned_cols=160 Identities=12% Similarity=0.108 Sum_probs=96.4
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..|..| .-.+++|++.. ++.|.+++.... -...+.++|+.|+||||+|+.+.+...-..
T Consensus 6 LarKYRP~tFddIIGQe~v--------v~~L~~ai~~~r------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~ 71 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHV--------VKALQNALDEGR------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGE 71 (709)
T ss_pred HHHHhCCCCHHHHcCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCC
Confidence 4445444 55578999999 999999886553 246789999999999999998866532110
Q ss_pred ------HHhhhCCCC-------CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 90 ------IHNTISPET-------ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 90 ------i~~~~~~~~-------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
....+.... ........+.+.+.+... ..+++-++|+|+++..+......|+..+......++
T Consensus 72 pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 72 PCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred CCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 011110000 001122333333333211 235667899999997666667777877765545555
Q ss_pred EEEeCCC-hHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 153 VIVTTRN-QGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 153 IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|++|.+ ..+... .+....+++.+++.++....+.+.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHH
Confidence 6655543 333222 122235788899999888877654
No 38
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.66 E-value=2e-07 Score=86.49 Aligned_cols=145 Identities=10% Similarity=0.051 Sum_probs=83.2
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------- 89 (206)
-.+++||+++ ++++++.|..... .-+.++|++|+|||++|..++.......
T Consensus 178 ~~~~igr~~e--------i~~~~~~L~r~~~-------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 178 LDPVIGREKE--------IERVIQILGRRTK-------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCcHHH--------HHHHHHHHccccc-------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3568999999 9999999976543 4567999999999999998877653211
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHhhh-CCceEEEEEcCCCCCC-------cccH-HHHHhhcccCCCCcEEEEeCCCh
Q 039853 90 IHNTISPETASASDDNLNSLQVKLKSGL-SRKKFQLASGDMWKDK-------YVDW-TNQRVLFVAVASRRKVIVTTRNQ 160 (206)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~-~~l~~~l~~~~~gs~IiiTTR~~ 160 (206)
+...+.... ...+.+...+.+.+.+ ..++.+|++|+++..- .... +.+++.+.. +. -++|-+|...
T Consensus 243 ~~~l~ag~~---~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~-l~~IgaTt~~ 317 (821)
T CHL00095 243 IGLLLAGTK---YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GE-LQCIGATTLD 317 (821)
T ss_pred HHHHhccCC---CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CC-cEEEEeCCHH
Confidence 111111111 1112222222232222 3467899999997321 1112 223333332 21 2344455444
Q ss_pred HHHHh-------cCCCCceeCCCCCHHHHHHHHhh
Q 039853 161 GVTSI-------MGTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 161 ~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
..... .....++.+...+.++...+++.
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12335678888898888888764
No 39
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.3e-07 Score=84.06 Aligned_cols=160 Identities=12% Similarity=0.082 Sum_probs=100.7
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH------
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN------ 88 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------ 88 (206)
+..|..+ .-.+++|.+.. ++.|.+++..+. -...+.++|..|+||||+|+.+.+...-.
T Consensus 6 LarKYRPqtFddVIGQe~v--------v~~L~~al~~gR------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~ 71 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHV--------VRALTHALEQQR------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG 71 (700)
T ss_pred HHHHhCCCcHHHHcCcHHH--------HHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc
Confidence 4445444 45568999999 999999886654 24678999999999999998876544210
Q ss_pred ---------H-HHhhhCCC----C---CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccC
Q 039853 89 ---------S-IHNTISPE----T---ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAV 147 (206)
Q Consensus 89 ---------~-i~~~~~~~----~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 147 (206)
+ -...+... . ........+++.+.+... ..++.-++|+|+++..+...++.|+..+..-
T Consensus 72 g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 72 GITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred cCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 0 01111000 0 001122344444433221 2355678999999988888888888888765
Q ss_pred CCCcE-EEEeCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhc
Q 039853 148 ASRRK-VIVTTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 148 ~~gs~-IiiTTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
..+.+ |++||....+..-+ .....+++..++.++..+.+.+.
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~I 195 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAI 195 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 45544 55566555554332 22257899999999988887754
No 40
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=4.6e-07 Score=79.92 Aligned_cols=159 Identities=12% Similarity=0.051 Sum_probs=97.5
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH------
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN------ 88 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------ 88 (206)
+..+.-| .-..++|.+.. ++.|...+.... -...+.++|++|+||||+|+.+++...-.
T Consensus 6 La~KyRP~~f~diiGq~~~--------v~~L~~~i~~~r------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~ 71 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHA--------LNSLVHALETQK------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAE 71 (546)
T ss_pred HHHHHCcCcHHHhcCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 3444444 45568899999 888888886543 34668899999999999999887543210
Q ss_pred ----H-HHhhhCCCC-------CCCCCCCHHH---HHHHHHh-hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 89 ----S-IHNTISPET-------ASASDDNLNS---LQVKLKS-GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 89 ----~-i~~~~~~~~-------~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
+ ....+.... ........++ +.+.+.. -..+++-++|+|+++..+...++.|+..+......+.
T Consensus 72 pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 72 PCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred CCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 0 000110000 0001122222 2222221 1235667999999998788888888888886655555
Q ss_pred EE-EeCCChHHHHh-cCCCCceeCCCCCHHHHHHHHhh
Q 039853 153 VI-VTTRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 153 Ii-iTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
+| +||....+... ......+++.+++.++..+.+.+
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHH
Confidence 54 45554444422 22235799999999998877765
No 41
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=1.3e-07 Score=82.76 Aligned_cols=149 Identities=14% Similarity=0.074 Sum_probs=87.9
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..++|++.. ++.+.+|+..... +...+.+.|+|++|+||||+|+.+++......+ .+ .. .+
T Consensus 12 ~l~dlvg~~~~--------~~~l~~~l~~~~~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~i--el--na--sd 74 (482)
T PRK04195 12 TLSDVVGNEKA--------KEQLREWIESWLK---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVI--EL--NA--SD 74 (482)
T ss_pred CHHHhcCCHHH--------HHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEE--EE--cc--cc
Confidence 44567899998 8999998865331 112678999999999999999998877632210 00 00 11
Q ss_pred CCCHHHHHHHHHhh-----hC-CceEEEEEcCCCCCCc----ccHHHHHhhcccCCCCcEEEEeCCC-hHHH--HhcCCC
Q 039853 103 DDNLNSLQVKLKSG-----LS-RKKFQLASGDMWKDKY----VDWTNQRVLFVAVASRRKVIVTTRN-QGVT--SIMGTM 169 (206)
Q Consensus 103 ~~~~~~~~~~l~~~-----l~-~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~--~~~~~~ 169 (206)
......+...+... +. .++.+||+|+++.... ..+..+...+. ..+. .+|+|+.+ .... ......
T Consensus 75 ~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-~~~~-~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 75 QRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK-KAKQ-PIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred cccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH-cCCC-CEEEeccCccccchhhHhccc
Confidence 11222222222221 12 2677999999985433 33555665554 2333 35555533 2221 111223
Q ss_pred CceeCCCCCHHHHHHHHhhcc
Q 039853 170 PAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 170 ~~~~l~~L~~~~a~~Lf~~~a 190 (206)
..+.+.+++.++....+.+.+
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHH
Confidence 568999999998888887654
No 42
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=3.6e-07 Score=79.03 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=97.9
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..+.-| .-..++|.+.. +..|..++....- ...+.++|++|+||||+|+.+++...-..
T Consensus 8 L~~KyRP~~f~dvVGQe~i--------v~~L~~~i~~~ri------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~ 73 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLA--------IGALQNALKSGKI------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE 73 (484)
T ss_pred hHHHhCCCCHHHHhChHHH--------HHHHHHHHHcCCC------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc
Confidence 3344444 45567898888 8888888865532 35789999999999999998876542210
Q ss_pred ----------HHhhhCCCCCC---CCCCCHHHHH---HHHHh-hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 90 ----------IHNTISPETAS---ASDDNLNSLQ---VKLKS-GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 90 ----------i~~~~~~~~~~---~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
+.......... ......+... +.+.. ...++.-++|+|+++..+.+.++.++..+........
T Consensus 74 pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~vi 153 (484)
T PRK14956 74 PCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIV 153 (484)
T ss_pred ccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceE
Confidence 21111111000 0111222222 22221 1234566899999998888889998888765444444
Q ss_pred EE-EeCCChHHHHh-cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 153 VI-VTTRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 153 Ii-iTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.| .||....+... ......|.+.+++.++..+.+.+.+
T Consensus 154 FILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 154 FILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred EEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 33 45554544322 2233569999999988888877653
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.63 E-value=4.8e-07 Score=82.64 Aligned_cols=157 Identities=12% Similarity=0.052 Sum_probs=90.0
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.+..+.||+++ +++|...|...-. +.....++.|+|.+|.|||+.++.+........
T Consensus 753 VPD~LPhREeE--------IeeLasfL~paIk--gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 753 VPKYLPCREKE--------IKEVHGFLESGIK--QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred CCCcCCChHHH--------HHHHHHHHHHHHh--cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 45678899999 8888887754321 112335778999999999999999976542110
Q ss_pred --------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC---CceEEEEEcCCCCCCcccHHHHHhhccc-CCCCc
Q 039853 90 --------------IHNTISPETASASDDNLNSLQVKLKSGLS---RKKFQLASGDMWKDKYVDWTNQRVLFVA-VASRR 151 (206)
Q Consensus 90 --------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs 151 (206)
|.+++..... ..........+.+...+. +...+||||+++......-+.|...+.. ...++
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~S 901 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINS 901 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCC
Confidence 5555533320 122233344445555442 2245899999985432222223322221 12355
Q ss_pred EEEE--eCCChH--------HHHhcCCCCceeCCCCCHHHHHHHHhhccC
Q 039853 152 KVIV--TTRNQG--------VTSIMGTMPAYELKKLVNDSCRLIFSQHPS 191 (206)
Q Consensus 152 ~Iii--TTR~~~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~af 191 (206)
+|++ +|.+.. +...++ ...+...|.+.++..+++..++-
T Consensus 902 KLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 902 KLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred eEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 5544 343212 111122 12467799999999999988763
No 44
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.61 E-value=1.6e-07 Score=80.03 Aligned_cols=151 Identities=12% Similarity=0.017 Sum_probs=82.5
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCC------CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHh
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDS------ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHN 92 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~ 92 (206)
++.|+++. +++|.+.+...-. .-+-..++-+.++|++|.|||++|+++++.....+ +..
T Consensus 132 di~Gl~~~--------~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 132 DIGGLEEQ--------IREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred HhCCcHHH--------HHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34567766 7777665532110 00123456799999999999999999987654332 221
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC-----------cccHHHHHhhc---cc--CCCCcEEEEe
Q 039853 93 TISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK-----------YVDWTNQRVLF---VA--VASRRKVIVT 156 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~~~gs~IiiT 156 (206)
... ......+...+...-...+.+|+||+++..- .+.+..+...+ .. ...+..||.|
T Consensus 204 ~~~-------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~a 276 (389)
T PRK03992 204 KFI-------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAA 276 (389)
T ss_pred hhc-------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEe
Confidence 111 0111122222222223457899999998420 11112222222 21 1234567767
Q ss_pred CCChHHHH--hcC---CCCceeCCCCCHHHHHHHHhhccC
Q 039853 157 TRNQGVTS--IMG---TMPAYELKKLVNDSCRLIFSQHPS 191 (206)
Q Consensus 157 TR~~~v~~--~~~---~~~~~~l~~L~~~~a~~Lf~~~af 191 (206)
|....... ..+ -...+.+++.+.++..++|+.+..
T Consensus 277 Tn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 277 TNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred cCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 76543221 111 124689999999999999998754
No 45
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=4.9e-07 Score=81.02 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=100.8
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..|.-| .-..++|.+.. ++.|.+.+.... -...+.++|..|+||||+|+.+++...-..
T Consensus 6 La~KyRP~~f~divGQe~v--------v~~L~~~l~~~r------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~ 71 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHV--------LTALANALDLGR------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITAT 71 (647)
T ss_pred HHHHhCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCC
Confidence 4445444 55668899998 888888886543 235678999999999999998876653211
Q ss_pred ------HHhhhCCCC-------CCCCCCCHHHHHHHHHh----hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 90 ------IHNTISPET-------ASASDDNLNSLQVKLKS----GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 90 ------i~~~~~~~~-------~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
....+.... ........++..+.+.. -..+++-++|+|+++..+...++.|+..+..-....+
T Consensus 72 pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 72 PCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred CCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 111221110 00011223333322211 1235667899999998888888888888876555554
Q ss_pred E-EEeCCChHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 153 V-IVTTRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 153 I-iiTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+ ++||....+... ......|++.+|+.++..+.+.+.
T Consensus 152 FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred EEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHH
Confidence 4 445555555432 222357999999999998888764
No 46
>PRK08727 hypothetical protein; Validated
Probab=98.60 E-value=4.9e-07 Score=71.80 Aligned_cols=121 Identities=14% Similarity=0.061 Sum_probs=69.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCC-cccHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDK-YVDWT 138 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~~~ 138 (206)
..+.|+|.+|+|||+|++++++...... ... .-.+.......+.+.+. .+.-+||+||++... ...|.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~------~~~---~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~ 112 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG------RSS---AYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDE 112 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC------CcE---EEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHH
Confidence 4599999999999999999877643221 000 00011112222222221 133589999998432 12333
Q ss_pred H-HHhhccc-CCCCcEEEEeCCChHH---------HHhcCCCCceeCCCCCHHHHHHHHhhccC
Q 039853 139 N-QRVLFVA-VASRRKVIVTTRNQGV---------TSIMGTMPAYELKKLVNDSCRLIFSQHPS 191 (206)
Q Consensus 139 ~-l~~~l~~-~~~gs~IiiTTR~~~v---------~~~~~~~~~~~l~~L~~~~a~~Lf~~~af 191 (206)
. +...+.. ..+|..||+||+...- ..-+.....+++++++.++-.+++.+.+.
T Consensus 113 ~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 113 VALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 2 2222221 1345669999985222 22222335789999999999999998653
No 47
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=4.3e-07 Score=77.64 Aligned_cols=157 Identities=10% Similarity=0.089 Sum_probs=95.3
Q ss_pred Hhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--------
Q 039853 18 KKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------- 88 (206)
Q Consensus 18 ~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------- 88 (206)
.+.-| .-..++|.+.. ++.|.+++.... -...+.++|++|+||||+|..+++...-.
T Consensus 8 ~k~RP~~~~eiiGq~~~--------~~~L~~~~~~~~------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~ 73 (397)
T PRK14955 8 RKYRPKKFADITAQEHI--------TRTIQNSLRMGR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADY 73 (397)
T ss_pred HhcCCCcHhhccChHHH--------HHHHHHHHHhCC------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccc
Confidence 34444 55568898888 888888885543 23568899999999999998876543110
Q ss_pred -----H----------HHhhhCCCC---CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcc
Q 039853 89 -----S----------IHNTISPET---ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFV 145 (206)
Q Consensus 89 -----~----------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 145 (206)
. +........ ........+++.+ +.+.+ .+++-++|+|+++..+...++.+...+.
T Consensus 74 ~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE 152 (397)
T PRK14955 74 LQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE 152 (397)
T ss_pred cccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh
Confidence 0 110000000 0001122344433 22333 3456689999999777778888888887
Q ss_pred cCCCCcEEEEeC-CChHHHHhcC-CCCceeCCCCCHHHHHHHHhhc
Q 039853 146 AVASRRKVIVTT-RNQGVTSIMG-TMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 146 ~~~~gs~IiiTT-R~~~v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
...+.+.+|++| +...+...+. ....+++.+++.++..+.+...
T Consensus 153 ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~ 198 (397)
T PRK14955 153 EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGI 198 (397)
T ss_pred cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666666655544 4444432221 1246889999998888777664
No 48
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.59 E-value=3.7e-07 Score=84.74 Aligned_cols=146 Identities=7% Similarity=0.065 Sum_probs=83.8
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---------H---
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------I--- 90 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i--- 90 (206)
.-..++||+.+ +.+++..|..... .-+.++|++|+|||+||+.++++..... +
T Consensus 185 ~ld~~iGr~~e--------i~~~i~~l~r~~~-------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 185 KIDPVLGRDDE--------IRQMIDILLRRRQ-------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCcccCCHHH--------HHHHHHHHhcCCc-------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45678999999 9999998876654 4567999999999999999887652111 0
Q ss_pred -HhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCCc-----ccHH---HHHhhcccCCCCc-EEEEeCC
Q 039853 91 -HNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDKY-----VDWT---NQRVLFVAVASRR-KVIVTTR 158 (206)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~-----~~~~---~l~~~l~~~~~gs-~IiiTTR 158 (206)
+..+.... ....+.+...+.+.+.+. +++.+|++|+++.... ...+ .+++.+. +|. ++|-+|.
T Consensus 250 ~l~~l~ag~--~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~---~G~l~~IgaTT 324 (852)
T TIGR03345 250 DLGLLQAGA--SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA---RGELRTIAATT 324 (852)
T ss_pred ehhhhhccc--ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh---CCCeEEEEecC
Confidence 00010000 011111122222222222 4689999999985321 1112 2334433 343 3444444
Q ss_pred ChHHHH-------hcCCCCceeCCCCCHHHHHHHHhh
Q 039853 159 NQGVTS-------IMGTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 159 ~~~v~~-------~~~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
...... ..+....+.+++++.++..++|+.
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence 332211 112335799999999999999753
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.59 E-value=4.1e-07 Score=71.06 Aligned_cols=157 Identities=17% Similarity=0.085 Sum_probs=82.8
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhh
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTI 94 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~ 94 (206)
+...+-| .-.+|+|++.. ++.+.-++..-.. ....+.-+.+||+||+||||||..+++...... ..+
T Consensus 14 l~~~lRP~~L~efiGQ~~l--------~~~l~i~i~aa~~--r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~--~~~ 81 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHL--------KGNLKILIRAAKK--RGEALDHMLFYGPPGLGKTTLARIIANELGVNF--KIT 81 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHH--------HHHHHHHHHHHHC--TTS---EEEEESSTTSSHHHHHHHHHHHCT--E--EEE
T ss_pred hHHhcCCCCHHHccCcHHH--------HhhhHHHHHHHHh--cCCCcceEEEECCCccchhHHHHHHHhccCCCe--Eec
Confidence 3344445 66779999888 6665444432111 123567899999999999999999887765542 011
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccC--------C-----------CCcEEEE
Q 039853 95 SPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAV--------A-----------SRRKVIV 155 (206)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~-----------~gs~Iii 155 (206)
. .+......++...+.. ++ ++-+|.+|.++..+...-+.+.+.+.++ + +-+-|=-
T Consensus 82 s----g~~i~k~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 82 S----GPAIEKAGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp E----CCC--SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred c----chhhhhHHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 1 1122233445444433 43 3457778999987777767666655432 1 1222334
Q ss_pred eCCChHHHHhcCCC-C-ceeCCCCCHHHHHHHHhhcc
Q 039853 156 TTRNQGVTSIMGTM-P-AYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 156 TTR~~~v~~~~~~~-~-~~~l~~L~~~~a~~Lf~~~a 190 (206)
|||...+..-.... . +.+++..+.++-.++..+.|
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 77775554433322 2 35899999999999998765
No 50
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.58 E-value=8.3e-07 Score=74.49 Aligned_cols=154 Identities=11% Similarity=0.073 Sum_probs=92.1
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-------------H
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------------S 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------~ 89 (206)
.-..++|++.. ++.|.+++.... -...+.++|++|+|||++|+.+.....-. +
T Consensus 12 ~~~~iig~~~~--------~~~l~~~~~~~~------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 12 TFEDVIGQEHI--------VQTLKNAIKNGR------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred cHhhccCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 44567899999 999998886543 34678999999999999998776543110 0
Q ss_pred --HHhhhCCCC---CCCCCCCHHH---HHHHHHh-hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCCh
Q 039853 90 --IHNTISPET---ASASDDNLNS---LQVKLKS-GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQ 160 (206)
Q Consensus 90 --i~~~~~~~~---~~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~ 160 (206)
+........ ........+. +.+.+.. -+.+++-++|+|+++..+...+..+...+......+.+|++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred HHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 111000000 0001112222 2222221 123456689999998656666777877776555566666666543
Q ss_pred H-HHH-hcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 161 G-VTS-IMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 161 ~-v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. +.. .......+++.+++.++..+.+...+
T Consensus 158 ~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 158 HKIPATILSRCQRFDFKRIPLEDIVERLKKIL 189 (355)
T ss_pred HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHH
Confidence 3 222 22223568899999999888887643
No 51
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.57 E-value=3.5e-07 Score=75.66 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=83.9
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..++|++.. .+.+..++.... -...+.++|++|+|||++|+.+++......+ .+. . ..
T Consensus 19 ~~~~~~~~~~~--------~~~l~~~~~~~~------~~~~lll~G~~G~GKT~la~~l~~~~~~~~~--~i~--~--~~ 78 (316)
T PHA02544 19 TIDECILPAAD--------KETFKSIVKKGR------IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL--FVN--G--SD 78 (316)
T ss_pred cHHHhcCcHHH--------HHHHHHHHhcCC------CCeEEEeeCcCCCCHHHHHHHHHHHhCccce--Eec--c--Cc
Confidence 33457888888 888888886432 3467888999999999999998775422110 000 0 01
Q ss_pred CCCHHHHHHHHHhhh-----CCceEEEEEcCCCCC-CcccHHHHHhhcccCCCCcEEEEeCCChH-HHH-hcCCCCceeC
Q 039853 103 DDNLNSLQVKLKSGL-----SRKKFQLASGDMWKD-KYVDWTNQRVLFVAVASRRKVIVTTRNQG-VTS-IMGTMPAYEL 174 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~-~~~~~~~~~l 174 (206)
...+.+...+..+. .+.+-++|+|+++.. ..+....+...+.....++.+|+||.... +.. .......+.+
T Consensus 79 -~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 79 -CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred -ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 11233323333222 234568999999855 22333445554555566778888886532 111 1122245777
Q ss_pred CCCCHHHHHHHHh
Q 039853 175 KKLVNDSCRLIFS 187 (206)
Q Consensus 175 ~~L~~~~a~~Lf~ 187 (206)
+..+.++..+++.
T Consensus 158 ~~p~~~~~~~il~ 170 (316)
T PHA02544 158 GVPTKEEQIEMMK 170 (316)
T ss_pred CCCCHHHHHHHHH
Confidence 7777777665543
No 52
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.57 E-value=7.2e-07 Score=70.92 Aligned_cols=119 Identities=11% Similarity=0.094 Sum_probs=67.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHH---HHHHHHHhhhCCceEEEEEcCCCCCC-cccH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLN---SLQVKLKSGLSRKKFQLASGDMWKDK-YVDW 137 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~ 137 (206)
+.+.|+|++|+|||+|++.+++...... ... .-.+.+ .....+.+.+.. .-+|++||++... ...|
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~------~~v---~y~~~~~~~~~~~~~~~~~~~-~dlliiDdi~~~~~~~~~ 115 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRG------RAV---GYVPLDKRAWFVPEVLEGMEQ-LSLVCIDNIECIAGDELW 115 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC------CeE---EEEEHHHHhhhhHHHHHHhhh-CCEEEEeChhhhcCCHHH
Confidence 5789999999999999998887543110 000 000000 011122222221 2478999997432 2344
Q ss_pred HHHH-hhcccC-CCC-cEEEEeCCChHH---------HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 138 TNQR-VLFVAV-ASR-RKVIVTTRNQGV---------TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 138 ~~l~-~~l~~~-~~g-s~IiiTTR~~~v---------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.... ..+... ..| .++|+||+.... ..-+....++++.+++.++-.+++.+.+
T Consensus 116 ~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 116 EMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 4322 222211 123 368999876432 2223334689999999999999988755
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.56 E-value=1.8e-06 Score=69.62 Aligned_cols=129 Identities=8% Similarity=-0.054 Sum_probs=66.8
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHh-----hhCCCC--CCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHN-----TISPET--ASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~-----~~~~~~--~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
+...-+.++|++|+||||+|+.+++.......+. .+.... ............+.+.+. ...+|++|+++.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a---~~~VL~IDE~~~ 116 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYS 116 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc---cCCEEEEechhh
Confidence 4556788999999999999999876532110000 000000 000000111222222222 235889999984
Q ss_pred CC--------cccHHHHHhhcccCCCCcEEEEeCCChHHHH-------hcCC-CCceeCCCCCHHHHHHHHhhcc
Q 039853 132 DK--------YVDWTNQRVLFVAVASRRKVIVTTRNQGVTS-------IMGT-MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 132 ~~--------~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~-------~~~~-~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.. .+..+.+...+........+++++....... .... ...+.+++++.++..+++.+.+
T Consensus 117 L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 117 LARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred hccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 32 1233445555544433334555554332211 1111 2358999999999999998765
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=7.6e-07 Score=77.56 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=95.9
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH-------------HH
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV-------------NS 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~ 89 (206)
.-.+++|.+.. ++.|.+.+..+. -...+.++|++|+||||+|+.++....- .+
T Consensus 11 ~f~dliGQe~v--------v~~L~~a~~~~r------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 11 SFKDLVGQDVL--------VRILRNAFTLNK------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CHHHhcCcHHH--------HHHHHHHHHcCC------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 44567898888 888887775543 2458999999999999999887653210 00
Q ss_pred --HHhhhCCCC---CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEE-eCCC
Q 039853 90 --IHNTISPET---ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIV-TTRN 159 (206)
Q Consensus 90 --i~~~~~~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii-TTR~ 159 (206)
+........ ...+....++..+.+... +.++.-++|+|+++..+...++.+...+..-.+.+++|+ ||..
T Consensus 77 ~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred HHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 211111110 001122334433322111 134566899999997777788888888876666665555 4444
Q ss_pred hHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 160 QGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 160 ~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
..+...+ .....+++.+++.++..+.+.+.+
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHH
Confidence 4544332 233578999999999888887654
No 55
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=7.3e-07 Score=79.70 Aligned_cols=160 Identities=12% Similarity=0.109 Sum_probs=97.7
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH-------
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV------- 87 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------- 87 (206)
+..|.-| .-.+++|.+.. ++.|.+++.... -...+.++|..|+||||+|+.+.+...-
T Consensus 6 la~KyRP~~f~dviGQe~v--------v~~L~~~l~~~r------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~ 71 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHV--------VQALTNALTQQR------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQG 71 (618)
T ss_pred HHHHHCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCccccc
Confidence 3344444 45568898888 888888886554 3467899999999999999888543310
Q ss_pred --------HH-HHhhhCCCC-------CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccC
Q 039853 88 --------NS-IHNTISPET-------ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAV 147 (206)
Q Consensus 88 --------~~-i~~~~~~~~-------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 147 (206)
.+ ....+.... ........++..+.+... ..++.-++|+|+++..+...++.++..+...
T Consensus 72 ~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 72 GITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred CCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 00 111111000 001122333333322211 1234558899999988888888888888765
Q ss_pred CCCcEEE-EeCCChHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 148 ASRRKVI-VTTRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 148 ~~gs~Ii-iTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
....++| +||....+... ......+++.+|+.++..+.+.+.
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHH
Confidence 5555554 45554444322 222357999999999988888764
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=4.8e-07 Score=75.97 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=97.1
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH--------H------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV--------N------ 88 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------~------ 88 (206)
....++|.+.. .+.+...+.... -...+.++|+.|+||||+|..+++..-- .
T Consensus 21 ~~~~l~Gh~~a--------~~~L~~a~~~gr------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 21 ENTRLFGHEEA--------EAFLAQAYREGK------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred chhhccCcHHH--------HHHHHHHHHcCC------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 56678999999 888888886554 3467999999999999999877554411 0
Q ss_pred --H-HHhhhC-----------CCCCC-----CCCCCHHHHHHHHHhhhC-----CceEEEEEcCCCCCCcccHHHHHhhc
Q 039853 89 --S-IHNTIS-----------PETAS-----ASDDNLNSLQVKLKSGLS-----RKKFQLASGDMWKDKYVDWTNQRVLF 144 (206)
Q Consensus 89 --~-i~~~~~-----------~~~~~-----~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l 144 (206)
+ ....+. ..... ......++.. .+.+++. +++-++|+|+++..+....+.++..+
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 0 111110 00000 0112234333 3444443 45678999999988888888888888
Q ss_pred ccCCCCcEE-EEeCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 145 VAVASRRKV-IVTTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 145 ~~~~~gs~I-iiTTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
........+ ++|++...+...+ .....+++.+++.++..+++.+..
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh
Confidence 765445544 4454443333222 223579999999999999998743
No 57
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.5e-06 Score=76.46 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=95.9
Q ss_pred Hhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--------
Q 039853 18 KKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------- 88 (206)
Q Consensus 18 ~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------- 88 (206)
.+.-| .-..++|.+.. ++.|.+++..+. -...+.++|++|+||||+|+.+++...-.
T Consensus 8 ~kyRP~~f~eivGQe~i--------~~~L~~~i~~~r------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14954 8 RKYRPSKFADITAQEHI--------THTIQNSLRMDR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVY 73 (620)
T ss_pred HHHCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccc
Confidence 34444 55568899988 888888886543 24568999999999999998776544110
Q ss_pred -----H------HHhhhCCCC-------CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhccc
Q 039853 89 -----S------IHNTISPET-------ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVA 146 (206)
Q Consensus 89 -----~------i~~~~~~~~-------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 146 (206)
. -...+.... ........+++.+.+... +.+++-++|+|+++..+...++.|...+..
T Consensus 74 ~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe 153 (620)
T PRK14954 74 LQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE 153 (620)
T ss_pred ccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 0 011110000 000112234444322222 234566889999997777778888888876
Q ss_pred CCCCcEEEE-eCCChHHHH-hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 147 VASRRKVIV-TTRNQGVTS-IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 147 ~~~gs~Iii-TTR~~~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
-...+.+|+ |++...+.. .......+++.+++.++....+.+.
T Consensus 154 Pp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 154 PPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMI 198 (620)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence 655555444 544444433 2333467999999999888777653
No 58
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=3e-06 Score=71.57 Aligned_cols=153 Identities=10% Similarity=0.024 Sum_probs=98.2
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH---------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV--------------- 87 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------- 87 (206)
....++|.+.. ++.|.+.+.... -...+.++|+.|+||+++|..+++..--
T Consensus 17 ~~~~iiGq~~~--------~~~L~~~~~~~r------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 17 ETTALFGHAAA--------EAALLDAYRSGR------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred chhhccChHHH--------HHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45678899998 888888886654 2467999999999999999766543310
Q ss_pred -----HH-HHhhh----CCCC----C---C-----CCCCCHHHHHHHHHhhhC-----CceEEEEEcCCCCCCcccHHHH
Q 039853 88 -----NS-IHNTI----SPET----A---S-----ASDDNLNSLQVKLKSGLS-----RKKFQLASGDMWKDKYVDWTNQ 140 (206)
Q Consensus 88 -----~~-i~~~~----~~~~----~---~-----~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l 140 (206)
.+ -.+.+ .... . . ......++.. .+.+.+. +.+-++|+|+++..+......+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHH
Confidence 00 00111 0000 0 0 0112233332 2334432 4567899999998888888888
Q ss_pred HhhcccCCCCcEEEEeCCCh-HHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 141 RVLFVAVASRRKVIVTTRNQ-GVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 141 ~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
...+..-..++.+|++|.+. .+...+ .....+.+.+++.++..+++....
T Consensus 162 LK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 162 LKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred HHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 88887666666666666554 333222 233579999999999999998763
No 59
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=1.6e-06 Score=73.83 Aligned_cols=155 Identities=8% Similarity=0.012 Sum_probs=93.6
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCC--C-CCCCeeEEEEEcCCCchHHHHHHHHhcChhH------------HH-
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSE--C-NDGGLSVTPVIGMGGSGNTTLALPVYNDKTV------------NS- 89 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~- 89 (206)
.++|.+.. ++.|.+++..+... . ...-...+.++|++|+|||++|+.++....- .+
T Consensus 6 ~IiGq~~~--------~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 6 DLVGQEAV--------VAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hccChHHH--------HHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 46788888 88888888765310 0 0113567999999999999999887543211 00
Q ss_pred -HHhhhCCCC----CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 90 -IHNTISPET----ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 90 -i~~~~~~~~----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
+........ ........+++.+ +.+.+ .+++-++++|+++..+....+.+...+....++..+|++|.+
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 111111000 0012233444333 22322 244558888999977777777788777766666656665544
Q ss_pred -hHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 160 -QGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 160 -~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
..+... ......+.+.+++.++..+.+...
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 444432 223357999999999999888743
No 60
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.50 E-value=1.2e-07 Score=67.94 Aligned_cols=89 Identities=21% Similarity=0.109 Sum_probs=50.8
Q ss_pred EEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCC-ceEEEEEcCCCCCCcc
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSR-KKFQLASGDMWKDKYV 135 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~ 135 (206)
|.|+|++|+|||++|+.+++...... +... ........+...+.+.-.. ++.+|++||++.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISS-------YAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTS-------STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccc-------cccccccccccccccccccccceeeeeccchhcccc
Confidence 57999999999999999888764322 1111 0111222233333332223 3799999999854333
Q ss_pred c-----------HHHHHhhcccCC---CCcEEEEeCCC
Q 039853 136 D-----------WTNQRVLFVAVA---SRRKVIVTTRN 159 (206)
Q Consensus 136 ~-----------~~~l~~~l~~~~---~gs~IiiTTR~ 159 (206)
. ...+...+.... ++..+|.||..
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccccccceeeecccccccccccceeEEeeCC
Confidence 3 344555554332 23456666655
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.8e-06 Score=75.88 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=96.8
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..|.-| .-.+++|.+.. ++.|.+++.... -...+.++|++|+||||+|+.+++...-..
T Consensus 6 l~~kyRP~~f~divGq~~v--------~~~L~~~~~~~~------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~ 71 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPV--------VRALSNALDQQY------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAN 71 (509)
T ss_pred HHHHHCCCCHHHhcCCHHH--------HHHHHHHHHhCC------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcc
Confidence 3444444 45568899999 999999986553 245789999999999999988776542110
Q ss_pred ------HHhhhCCCC-------CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 90 ------IHNTISPET-------ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 90 ------i~~~~~~~~-------~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
....+.... ........++..+.+ +.+ .++.-++|+|+++..+....+.++..+......+
T Consensus 72 pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~-~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 72 PCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELL-DNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred cCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHH-HHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 111110000 001123344433322 222 3456689999999888888888888887665666
Q ss_pred EEEE-eCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhh
Q 039853 152 KVIV-TTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 152 ~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
++|+ ||....+...+ .....+++.+++.++..+.+.+
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~ 189 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQH 189 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 5555 44444433222 2224688999998887665544
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.5e-06 Score=77.08 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=96.7
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH------
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN------ 88 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------ 88 (206)
+..+..| .-..++|++.. ++.+.+++.... -.+.+.++|++|+||||+|+.+++...-.
T Consensus 6 ~~~KyRP~~F~dIIGQe~i--------v~~L~~aI~~~r------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~ 71 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELI--------KKILVNAILNNK------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD 71 (605)
T ss_pred HHHHhCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 3444444 55678899999 889888886543 24689999999999999999876553110
Q ss_pred ----H-HHhhhCCCC-------CCCCCCCHHHHHHHHH---h-hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 89 ----S-IHNTISPET-------ASASDDNLNSLQVKLK---S-GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 89 ----~-i~~~~~~~~-------~~~~~~~~~~~~~~l~---~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
+ ....+.... ........+++.+.+. . -..+++-++|+|+++..+...+..|...+......+.
T Consensus 72 ~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tv 151 (605)
T PRK05896 72 CCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVV 151 (605)
T ss_pred CCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEE
Confidence 0 111111000 0001123333332221 1 1123445799999997777788888888775555555
Q ss_pred EEE-eCCChHHHH-hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 153 VIV-TTRNQGVTS-IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 153 Iii-TTR~~~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|+ |+....+.. .......+++.+++.++....+...
T Consensus 152 fIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~i 190 (605)
T PRK05896 152 FIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSI 190 (605)
T ss_pred EEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHH
Confidence 554 444444432 2223357899999999988877764
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.3e-06 Score=77.13 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=95.2
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..+..| .-.+++|.+.. ++.|.+++.... -...+.++|++|+||||+|+.+.....-..
T Consensus 6 l~~k~rP~~f~divGq~~v--------~~~L~~~i~~~~------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~ 71 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHV--------VRALTNALEQQR------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTAT 71 (527)
T ss_pred HHHHhCCCcHHHhcCcHHH--------HHHHHHHHHcCC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 3444444 44567899998 888888886544 235778999999999999998865542110
Q ss_pred ------HHhhhCCCC-------CCCCCCCHHHHHHHHHh----hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 90 ------IHNTISPET-------ASASDDNLNSLQVKLKS----GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 90 ------i~~~~~~~~-------~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
-...+.... ........+.+.+.+.. -..+++-++|+|+++..+....+.++..+......+.
T Consensus 72 pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 72 PCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred CCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 000000000 00112233333322211 1235667999999997777778888888876555555
Q ss_pred EEE-eCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhc
Q 039853 153 VIV-TTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 153 Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|+ ||..+.+...+ .....+++.+++.++..+.+.+.
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~i 190 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHI 190 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 555 44443333211 11246889999988888777653
No 64
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.46 E-value=1.6e-06 Score=80.62 Aligned_cols=157 Identities=8% Similarity=0.024 Sum_probs=85.4
Q ss_pred hHHHHHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-
Q 039853 12 SIEMLFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS- 89 (206)
Q Consensus 12 ~i~~~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~- 89 (206)
...++-.+.-+ .-..++||+.+ +.++++.|..... .-+.++|++|+|||+||..++.......
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~e--------i~~~i~iL~r~~~-------~n~lL~G~pGvGKT~l~~~la~~i~~~~v 228 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEE--------IRRTIQVLQRRTK-------NNPVLIGEPGVGKTAIVEGLAQRIINGEV 228 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHH--------HHHHHHHHhcCCc-------CceEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 33333333333 34568999999 9999998876543 4577999999999999998877652111
Q ss_pred -------------HHhhhCCCCCCCCCCCHHHHHHHHHhhh--CCceEEEEEcCCCCCCc--------ccHHHHHhhccc
Q 039853 90 -------------IHNTISPETASASDDNLNSLQVKLKSGL--SRKKFQLASGDMWKDKY--------VDWTNQRVLFVA 146 (206)
Q Consensus 90 -------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~--------~~~~~l~~~l~~ 146 (206)
+-..+.... ...+.+...+.+.+.+ .+.+.+|++|+++.... +.-+.+++.+.
T Consensus 229 p~~l~~~~~~~l~l~~l~ag~~---~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~- 304 (857)
T PRK10865 229 PEGLKGRRVLALDMGALVAGAK---YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA- 304 (857)
T ss_pred chhhCCCEEEEEehhhhhhccc---hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-
Confidence 111111011 1111222222222222 24689999999984311 11222333332
Q ss_pred CCCCc-EEEEeCCChHHHH-------hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 147 VASRR-KVIVTTRNQGVTS-------IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 147 ~~~gs-~IiiTTR~~~v~~-------~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|. ++|-+|....... ..+....+.+..-+.++...+++..
T Consensus 305 --~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 305 --RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred --cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 333 3343443333221 1122235667767888888888654
No 65
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.45 E-value=1.5e-06 Score=81.03 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=82.7
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.-..++||+.+ +.+++..|..... .-+.++|++|+|||+||..++.+.....
T Consensus 171 ~~~~~igr~~e--------i~~~~~~l~r~~~-------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 171 KLDPVIGRDEE--------IRRTIQVLSRRTK-------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCcCCCcHHH--------HHHHHHHHhcCCC-------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34568999999 9999998866543 4566899999999999998877652211
Q ss_pred -HHhhhCCCCCCCCCCCHHHHHHHHHhhh-C-CceEEEEEcCCCCCC----c----ccHHHHHhhcccCCCCc-EEEEeC
Q 039853 90 -IHNTISPETASASDDNLNSLQVKLKSGL-S-RKKFQLASGDMWKDK----Y----VDWTNQRVLFVAVASRR-KVIVTT 157 (206)
Q Consensus 90 -i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~----~----~~~~~l~~~l~~~~~gs-~IiiTT 157 (206)
+...+.... ...+.+.....+.+.+ + +++.+|++|+++... . +..+.+++.+ ..|. ++|-+|
T Consensus 236 ~~~~l~a~~~---~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaT 309 (852)
T TIGR03346 236 DMGALIAGAK---YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGAT 309 (852)
T ss_pred eHHHHhhcch---hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeC
Confidence 111110111 1112222222222222 2 468999999998431 0 1112233332 2333 334344
Q ss_pred CChHHHHh-------cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 158 RNQGVTSI-------MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 158 R~~~v~~~-------~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
........ .+....+.++..+.++...++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 43333221 122356889989999999988754
No 66
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.44 E-value=2e-07 Score=73.34 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=67.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 127 (206)
....+.|+|..|+|||.|.+++++...... +...+.... ...... .+++.++ .-=+|++|
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~---~~~~~~----~~~~~~~-~~DlL~iD 104 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADAL---RDGEIE----EFKDRLR-SADLLIID 104 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHH---HTTSHH----HHHHHHC-TSSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHH---Hcccch----hhhhhhh-cCCEEEEe
Confidence 344578999999999999999987753321 222211111 001112 2334444 23578899
Q ss_pred CCCCCCc-ccHHH-HHhhcccC-CCCcEEEEeCCChH---------HHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 128 DMWKDKY-VDWTN-QRVLFVAV-ASRRKVIVTTRNQG---------VTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 128 dv~~~~~-~~~~~-l~~~l~~~-~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|++.... ..|.. +...+... ..|.+||+|++... +..-+...-++++.+++.++..+++.+.|
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 9985422 22333 22222211 34668999985532 22222233478999999999999998876
No 67
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2e-06 Score=76.92 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=99.1
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..+.-| .-.+++|++.. ++.|.+++..+. -...+.++|+.|+||||+|+.+++...-..
T Consensus 14 la~KyRP~~f~dliGq~~~--------v~~L~~~~~~gr------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~ 79 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAM--------VRTLTNAFETGR------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG 79 (598)
T ss_pred HHhhhCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC
Confidence 3344434 55578999999 899999886554 245789999999999999998876542110
Q ss_pred ---------------HHhhhCCCC---CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhccc
Q 039853 90 ---------------IHNTISPET---ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVA 146 (206)
Q Consensus 90 ---------------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 146 (206)
|........ ........+++.+ +.+.+ .+++-++|+|+++..+....+.|...+..
T Consensus 80 ~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred CCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 111111000 0011223344333 22222 24556799999997777778888888876
Q ss_pred CCCCcEEEE-eCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 147 VASRRKVIV-TTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 147 ~~~gs~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
-...+++|+ |+....+...+ .....+++.+++.++....+.+.+
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 656666555 54444443322 223578999999999888887653
No 68
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2e-06 Score=72.79 Aligned_cols=156 Identities=10% Similarity=0.097 Sum_probs=92.1
Q ss_pred hhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------H
Q 039853 19 KLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------I 90 (206)
Q Consensus 19 ~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i 90 (206)
+..| .-..++|++.. .+.+.+++.... -.+.+.++|++|+|||++|+.+.+...... +
T Consensus 10 k~rP~~~~~iig~~~~--------~~~l~~~i~~~~------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 10 KYRPQTFDDVVGQSHI--------TNTLLNAIENNH------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHCCCcHHhcCCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4433 55567899998 888888886543 346899999999999999998765532100 0
Q ss_pred -HhhhCCCCCCCCCCCHHHHHHHHHh----hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeC-CChHHH-
Q 039853 91 -HNTISPETASASDDNLNSLQVKLKS----GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTT-RNQGVT- 163 (206)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~- 163 (206)
...+.... ......+...+.+.+ -+.+++-++++|+++..+...+..+...+......+.+|++| ....+.
T Consensus 76 ~~~~~~l~~--~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 76 SFNIFELDA--ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred CcceEEecc--ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 00000000 111222333332221 123455689999998655566777777665444455555544 332322
Q ss_pred HhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 164 SIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 164 ~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.......++++.+++.++....+...+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIA 180 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHH
Confidence 222223578999999999888887644
No 69
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.43 E-value=1.8e-06 Score=79.09 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=82.3
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------- 89 (206)
-..++||+.+ ++++++.|..... .-+.++|++|+|||+||+.+++......
T Consensus 185 ~~~liGR~~e--------i~~~i~iL~r~~~-------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 185 IDPLIGREKE--------LERAIQVLCRRRK-------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCcCcCCCHH--------HHHHHHHHhccCC-------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3568999999 9999998876543 3457899999999999999886531111
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHhhh-CCceEEEEEcCCCCC------C--cccHHH-HHhhcccCCCCc-EEEEeCC
Q 039853 90 IHNTISPETASASDDNLNSLQVKLKSGL-SRKKFQLASGDMWKD------K--YVDWTN-QRVLFVAVASRR-KVIVTTR 158 (206)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~------~--~~~~~~-l~~~l~~~~~gs-~IiiTTR 158 (206)
+...+.... ...+.+...+.+.+.+ +..+.+|++|+++.. + ..+... +++.+. .|. ++|-+|.
T Consensus 250 ~~~llaG~~---~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~---~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccc---hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh---CCCeEEEecCC
Confidence 000010000 0111222222232323 345789999999842 1 112222 233332 333 3344444
Q ss_pred ChHHHH-------hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 159 NQGVTS-------IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 159 ~~~v~~-------~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
...... ..+....+.+++.+.++..++++..
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 333321 1123357999999999999999854
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.43 E-value=1.3e-05 Score=61.36 Aligned_cols=128 Identities=10% Similarity=0.060 Sum_probs=78.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHH-------------H--HHhhhCCC----CCCCCCCCHHHHHHHHHhhh----
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVN-------------S--IHNTISPE----TASASDDNLNSLQVKLKSGL---- 117 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------~--i~~~~~~~----~~~~~~~~~~~~~~~l~~~l---- 117 (206)
...+.++|+.|+|||++|+.+.....-. . +...-... .........+...+.+ +.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~-~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELV-EFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHH-HHHccCc
Confidence 4689999999999999998876554211 0 10000000 0001112333333222 222
Q ss_pred -CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCCh-HHHHhc-CCCCceeCCCCCHHHHHHHHhhc
Q 039853 118 -SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQ-GVTSIM-GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 118 -~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.+.+-++|+|+++..+...++.+...+....+.+.+|++|++. .+...+ .....+.+.+++.++..+.+.+.
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 3456789999999777777888888887666666677666543 222221 22357999999999999998876
No 71
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.6e-06 Score=70.43 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=96.5
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------- 89 (206)
+..+.+|+.+ ++++...|..--. +..+.-+.|+|.+|.|||+.++.++.......
T Consensus 16 P~~l~~Re~e--------i~~l~~~l~~~~~---~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~ 84 (366)
T COG1474 16 PEELPHREEE--------INQLASFLAPALR---GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELR 84 (366)
T ss_pred cccccccHHH--------HHHHHHHHHHHhc---CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCC
Confidence 3447899999 8888877754321 12333499999999999999999988775542
Q ss_pred --------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCCcccHHHHHhhcccCCC-CcEE--EEe
Q 039853 90 --------IHNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDKYVDWTNQRVLFVAVAS-RRKV--IVT 156 (206)
Q Consensus 90 --------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~I--iiT 156 (206)
++++++... .......+..+.+.+.+. ++..++|||+++......-+-+...+..... .++| |..
T Consensus 85 t~~~i~~~i~~~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i 162 (366)
T COG1474 85 TPYQVLSKILNKLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAV 162 (366)
T ss_pred CHHHHHHHHHHHcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEE
Confidence 666665443 344556667777777775 4789999999985422211233333322222 3433 334
Q ss_pred CCChHHHHh--------cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 157 TRNQGVTSI--------MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 157 TR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+-+-.+... .+..+ +..+|-+.++-.+.+..++
T Consensus 163 ~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 163 SNDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYDILRERV 203 (366)
T ss_pred eccHHHHHHhhhhhhhccCcce-eeeCCCCHHHHHHHHHHHH
Confidence 444433322 22323 7788889999999988765
No 72
>PRK06620 hypothetical protein; Validated
Probab=98.42 E-value=9.2e-07 Score=69.33 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=64.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQR 141 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~ 141 (206)
+.+.|+|++|+|||+|++.+++..... ++. .. .. .+ +.++ ..-+|++||++..+...+-.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~----~~----~~-----~~---~~~~-~~d~lliDdi~~~~~~~lf~l~ 106 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAY-IIK----DI----FF-----NE---EILE-KYNAFIIEDIENWQEPALLHIF 106 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCE-Ecc----hh----hh-----ch---hHHh-cCCEEEEeccccchHHHHHHHH
Confidence 679999999999999999877664321 110 00 00 00 1112 2357888999832211222222
Q ss_pred hhcccCCCCcEEEEeCCChHH-------HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 142 VLFVAVASRRKVIVTTRNQGV-------TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 142 ~~l~~~~~gs~IiiTTR~~~v-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
..+. ..|..||+|++...- ..-+...-++++++++.++...++++.+
T Consensus 107 N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 107 NIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred HHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 2222 346689998874322 2222233479999999999888887764
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.6e-06 Score=80.01 Aligned_cols=157 Identities=10% Similarity=0.045 Sum_probs=98.5
Q ss_pred Hhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--------
Q 039853 18 KKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------- 88 (206)
Q Consensus 18 ~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------- 88 (206)
.|.-+ .-..++|++.. ++.|.+++.... -...+.++|..|+||||+|+.+.+...-.
T Consensus 7 ~KyRP~~f~eiiGqe~v--------~~~L~~~i~~~r------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 7 RRYRPATFAEVIGQEHV--------TEPLSTALDSGR------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHhCCCCHHHhcCcHHH--------HHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 44444 44568899998 888999886543 23578999999999999998886554210
Q ss_pred -----H--HHhhhCCCC-----CCCCCCCHHHHHHHHHhh-----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 89 -----S--IHNTISPET-----ASASDDNLNSLQVKLKSG-----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 89 -----~--i~~~~~~~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
+ +...-.... ........+++.+ +++. ..++.-++|||+++..+...++.|+..+..-...+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 0 110000000 0001123344433 2222 23556688999999888888899998888766665
Q ss_pred EEEE-eCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhc
Q 039853 152 KVIV-TTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 152 ~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.+|+ |+....+...+ .....|++..++.++..+.+.+.
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence 5554 54444444322 23357899999999888777664
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.1e-06 Score=74.74 Aligned_cols=153 Identities=8% Similarity=0.077 Sum_probs=93.8
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.-..++|.+.. ++.|.+.+.... -...+.++|+.|+||||+|+.+++...-..
T Consensus 14 sf~dIiGQe~v--------~~~L~~ai~~~r------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 14 TFAEVAGQETV--------KAILSRAAQENR------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CHHHhcCCHHH--------HHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 44567888887 888888776543 246888999999999999988876653210
Q ss_pred --HHhhhCCCC---CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeC-C
Q 039853 90 --IHNTISPET---ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTT-R 158 (206)
Q Consensus 90 --i~~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTT-R 158 (206)
+........ ........+.... +.+.+ .+++-++|+|+++..+...++.|...+........+|++| .
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 111100000 0001122333322 32222 3566799999999777777888888876544455555544 4
Q ss_pred ChHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 159 NQGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 159 ~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
...+...+ .....+++.+++.++....+...+
T Consensus 159 ~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHH
Confidence 34444222 223468999999999988887643
No 75
>PRK05642 DNA replication initiation factor; Validated
Probab=98.38 E-value=1.3e-06 Score=69.36 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHH---HHHHhhhCCceEEEEEcCCCCCC-ccc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQ---VKLKSGLSRKKFQLASGDMWKDK-YVD 136 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~kr~LlVlDdv~~~~-~~~ 136 (206)
...+.|+|.+|+|||.|++++++....+. .. .--.+.+.+. ..+.+.+.+- -+|++||+.... ...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~------~~---v~y~~~~~~~~~~~~~~~~~~~~-d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG------EP---AVYLPLAELLDRGPELLDNLEQY-ELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC------Cc---EEEeeHHHHHhhhHHHHHhhhhC-CEEEEechhhhcCChH
Confidence 36789999999999999999876532110 00 0001111111 2233333332 268899997432 234
Q ss_pred HHH-HHhhccc-CCCCcEEEEeCCChHHHHh---------cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 137 WTN-QRVLFVA-VASRRKVIVTTRNQGVTSI---------MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 137 ~~~-l~~~l~~-~~~gs~IiiTTR~~~v~~~---------~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|.. +...+.. ...|..+|+|++...-... +....++++.+++.++-.+++++++
T Consensus 115 ~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 115 WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 544 3333332 2346678888875332211 1122568999999999999998655
No 76
>PTZ00202 tuzin; Provisional
Probab=98.37 E-value=3.2e-06 Score=72.19 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=92.0
Q ss_pred hhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH----------H
Q 039853 19 KLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV----------N 88 (206)
Q Consensus 19 ~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~ 88 (206)
.+|+..+.|+||+.+ +..|...|...+. ..++++.|.|++|+|||||++.+...... .
T Consensus 256 ~lPa~~~~FVGReaE--------la~Lr~VL~~~d~----~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~e 323 (550)
T PTZ00202 256 SAPAVIRQFVSREAE--------ESWVRQVLRRLDT----AHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTE 323 (550)
T ss_pred CCCCCccCCCCcHHH--------HHHHHHHHhccCC----CCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHH
Confidence 356678899999999 9999888864332 24569999999999999999887755421 1
Q ss_pred H----HHhhhCCCCCCCCCCCHHHHHHHHHhhh-----C-CceEEEEEcCCCCCCcccHHHHH---hhcccCCCCcEEEE
Q 039853 89 S----IHNTISPETASASDDNLNSLQVKLKSGL-----S-RKKFQLASGDMWKDKYVDWTNQR---VLFVAVASRRKVIV 155 (206)
Q Consensus 89 ~----i~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~Iii 155 (206)
. ++..++... .....++.+.+.+.+ . +++.+||+-= . +-+.+.... -.|-+...-|+|++
T Consensus 324 ElLr~LL~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-r--eg~~l~rvyne~v~la~drr~ch~v~ 396 (550)
T PTZ00202 324 DTLRSVVKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKL-R--EGSSLQRVYNEVVALACDRRLCHVVI 396 (550)
T ss_pred HHHHHHHHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-c--CCCcHHHHHHHHHHHHccchhheeee
Confidence 1 777777533 122233333333333 2 5667777652 2 222333322 22333455677877
Q ss_pred eCCChHHHHhc---CCCCceeCCCCCHHHHHHHHhhc
Q 039853 156 TTRNQGVTSIM---GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 156 TTR~~~v~~~~---~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
---.+.+.... ..-..|-+++++.++|.++-...
T Consensus 397 evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 397 EVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred eehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 54433332211 11146889999999998876643
No 77
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.37 E-value=2.9e-06 Score=69.39 Aligned_cols=118 Identities=12% Similarity=-0.003 Sum_probs=66.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHHH--------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVNS--------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGD 128 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 128 (206)
-+.++|++|.|||++|+.++....... ++..+... ........+.+. ..-+|+||+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~-------~~~~~~~~~~~a---~~gvL~iDE 129 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGH-------TAPKTKEILKRA---MGGVLFIDE 129 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhccc-------chHHHHHHHHHc---cCcEEEEec
Confidence 688999999999999976654432110 22211111 111222222222 336889999
Q ss_pred CCCC---------CcccHHHHHhhcccCCCCcEEEEeCCChHHHHhc--C------CCCceeCCCCCHHHHHHHHhhcc
Q 039853 129 MWKD---------KYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIM--G------TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 129 v~~~---------~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~--~------~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
++.. ..+.+..+...+.....+.+||.++......... . ....+.+++++.++..+++...+
T Consensus 130 i~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 130 AYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred hhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 8732 1223445556565455555666666543222211 1 12468999999999999988764
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=7.7e-06 Score=72.89 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=95.4
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----------HH
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------IH 91 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------i~ 91 (206)
.-..++|++.. ++.|.+++.... -...+.++|+.|+||||+|+.++....-.. -.
T Consensus 11 ~f~eivGq~~i--------~~~L~~~i~~~r------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 11 TFAEVVGQEHV--------TEPLSSALDAGR------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred cHHHhcCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 44567899988 888999886543 245789999999999999988876542100 11
Q ss_pred hhhCC----CC-----CCCCCCCHHHHHHHHHhh-----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEE-e
Q 039853 92 NTISP----ET-----ASASDDNLNSLQVKLKSG-----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIV-T 156 (206)
Q Consensus 92 ~~~~~----~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii-T 156 (206)
..+.. .. ........++..+ +.+. ..+++-++|+|+++..+....+.|+..+........+|+ |
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRe-l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRE-LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHH-HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 11110 00 0011123333322 2221 134566899999998888888888888886655555444 5
Q ss_pred CCChHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 157 TRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 157 TR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
|....+... ......|++.+++.++..+.+.+.
T Consensus 156 te~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 156 TEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred CChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence 555554432 223357999999999888777653
No 79
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.36 E-value=4.7e-06 Score=65.75 Aligned_cols=117 Identities=17% Similarity=0.078 Sum_probs=64.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQ 140 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l 140 (206)
...+.|+|.+|+|||+||+.+++...... ... ...+.......+ ... ...-++++||++..+......+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~------~~~---~~i~~~~~~~~~-~~~-~~~~~liiDdi~~l~~~~~~~L 110 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGG------RNA---RYLDAASPLLAF-DFD-PEAELYAVDDVERLDDAQQIAL 110 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC------CcE---EEEehHHhHHHH-hhc-ccCCEEEEeChhhcCchHHHHH
Confidence 36789999999999999999887642111 000 000111111111 112 2334788999985544444445
Q ss_pred HhhcccC-CCCc-EEEEeCCChHHHH--------hcCCCCceeCCCCCHHHHHHHHhh
Q 039853 141 RVLFVAV-ASRR-KVIVTTRNQGVTS--------IMGTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 141 ~~~l~~~-~~gs-~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
...+... ..+. .+|+|++...... .+.....+++++++.++-..++.+
T Consensus 111 ~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 111 FNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 4444322 2333 3666666433211 122225789999999877777665
No 80
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8.8e-06 Score=72.91 Aligned_cols=160 Identities=9% Similarity=0.079 Sum_probs=96.2
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH-----H-
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV-----N- 88 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----~- 88 (206)
+..+.-+ .-..++|.+.. ++.|..++.... -...+.++|+.|+||||+|+.+++.... .
T Consensus 6 l~~kyRP~~~~eiiGq~~~--------~~~L~~~i~~~~------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~ 71 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHV--------VQTLRNAIAEGR------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG 71 (585)
T ss_pred HHHHhCCCCHHHhcCCHHH--------HHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 3344444 55578899998 888888886543 2357789999999999999988654310 0
Q ss_pred -----H-HHhhhCCCC-------CCCCCCCHHHHHHHHHhh-----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCC
Q 039853 89 -----S-IHNTISPET-------ASASDDNLNSLQVKLKSG-----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASR 150 (206)
Q Consensus 89 -----~-i~~~~~~~~-------~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 150 (206)
+ ....+.... ........+++.+ +.+. ..+++-++|+|+++..+.+.++.|...+......
T Consensus 72 ~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~ 150 (585)
T PRK14950 72 RPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 150 (585)
T ss_pred CCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC
Confidence 0 222221111 0001223333332 2222 2245678999999877777788888777765556
Q ss_pred cEEEEeCC-ChHHHHh-cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 151 RKVIVTTR-NQGVTSI-MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 151 s~IiiTTR-~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+.+|++|. ...+... ......+.+.+++..+....+.+.+
T Consensus 151 tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 151 AIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred eEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence 65655553 3333322 2223468888898888877776653
No 81
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=3.1e-06 Score=73.49 Aligned_cols=159 Identities=11% Similarity=0.086 Sum_probs=94.6
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH------
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN------ 88 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------ 88 (206)
+..+.-| .-.+++|.+.. ++.|.+++.... -...+.++|++|+||||+|+.+++...-.
T Consensus 7 ~~~kyRP~~~~diiGq~~~--------v~~L~~~i~~~~------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~ 72 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAV--------VAVLKNALRFNR------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQ 72 (451)
T ss_pred HHHHhCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCC
Confidence 3344444 55678899998 888888886543 24678899999999999998876543110
Q ss_pred -----H-HHhhhCCCC-------CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCC
Q 039853 89 -----S-IHNTISPET-------ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASR 150 (206)
Q Consensus 89 -----~-i~~~~~~~~-------~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 150 (206)
+ ....+.... ........+.+.. +.+.+ .+++-++|+|+++..+....+.|...+......
T Consensus 73 ~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 73 EPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred CCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 0 000010000 0001122233322 22222 256678999999866666777777777765555
Q ss_pred cEEEEeC-CChHHHH-hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 151 RKVIVTT-RNQGVTS-IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 151 s~IiiTT-R~~~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
..+|++| +...+.. .......+++.+++.++....+.+.
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALI 192 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHH
Confidence 5555555 3333322 2222357899999999988877764
No 82
>PRK08181 transposase; Validated
Probab=98.29 E-value=2.3e-06 Score=69.27 Aligned_cols=90 Identities=19% Similarity=0.101 Sum_probs=48.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHH-----H-----HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVN-----S-----IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-----~-----i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
.-+.++|++|+|||.||.++.+..... + ++..+.... .........+.+ . +.-|||+||+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~---~~~~~~~~l~~l----~-~~dLLIIDDlg~ 178 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR---RELQLESAIAKL----D-KFDLLILDDLAY 178 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH---hCCcHHHHHHHH----h-cCCEEEEecccc
Confidence 359999999999999999887644211 1 333332211 111222222222 1 335999999964
Q ss_pred CCcccHH--HHHhhcccC-CCCcEEEEeCCCh
Q 039853 132 DKYVDWT--NQRVLFVAV-ASRRKVIVTTRNQ 160 (206)
Q Consensus 132 ~~~~~~~--~l~~~l~~~-~~gs~IiiTTR~~ 160 (206)
.....|. .+...+... ..+ .+||||...
T Consensus 179 ~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 179 VTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 4333332 233333322 234 588888763
No 83
>CHL00181 cbbX CbbX; Provisional
Probab=98.28 E-value=1.1e-05 Score=66.10 Aligned_cols=119 Identities=12% Similarity=-0.023 Sum_probs=67.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH--------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS--------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 127 (206)
..+.++|++|+|||++|+.++....... ++....... .......+.+. ..-+|++|
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~-------~~~~~~~l~~a---~ggVLfID 129 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHT-------APKTKEVLKKA---MGGVLFID 129 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccc-------hHHHHHHHHHc---cCCEEEEE
Confidence 4588999999999999999866432110 222111111 11111222222 23589999
Q ss_pred CCCCC---------CcccHHHHHhhcccCCCCcEEEEeCCChHHHHhc--------CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 128 DMWKD---------KYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIM--------GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 128 dv~~~---------~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+++.. +.+....+...+.....+.+||.++......... +....+.+++++.++..+++.+.+
T Consensus 130 E~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 130 EAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 99732 1223344555555455556666776543332211 122468999999999999988764
No 84
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=9.6e-06 Score=71.42 Aligned_cols=153 Identities=10% Similarity=0.057 Sum_probs=95.2
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChh----HH---------H
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKT----VN---------S 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~---------~ 89 (206)
.-..++|.+.. .+.|...+.... -...+.++|+.|+||||+|+.+++..- .. +
T Consensus 12 ~fdeiiGqe~v--------~~~L~~~I~~gr------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 12 HFDELIGQESV--------SKTLSLALDNNR------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CHHHccCcHHH--------HHHHHHHHHcCC------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 44567898888 888888885443 346779999999999999987655431 00 0
Q ss_pred --HHhhhCCCC---CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCCh
Q 039853 90 --IHNTISPET---ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQ 160 (206)
Q Consensus 90 --i~~~~~~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~ 160 (206)
+........ ........+.+.+.+... ..+++-++|+|+++..+.+..+.++..+....+.+++|++|.+.
T Consensus 78 ~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred HHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 111110000 001112345555544321 12456689999999888888888888887666666666655442
Q ss_pred -HHHH-hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 161 -GVTS-IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 161 -~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.+.. .......+++.+++.++....+.+.
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~I 188 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTI 188 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHH
Confidence 2222 1122357899999999888877653
No 85
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.5e-05 Score=71.68 Aligned_cols=153 Identities=9% Similarity=0.031 Sum_probs=95.6
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-----H-------H
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-----S-------I 90 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----~-------i 90 (206)
.-..++|.+.. .+.|..++.... -...+.++|+.|+||||+|+.+.....-. . -
T Consensus 15 ~f~~viGq~~~--------~~~L~~~i~~~~------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 15 TFESVVGQEAL--------TTTLKNAIATNK------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CHHHhcCcHHH--------HHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 55568899998 889999886543 34678999999999999998765543100 0 0
Q ss_pred HhhhCCCC-------CCCCCCCHHHHHHHHHh----hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEE-eCC
Q 039853 91 HNTISPET-------ASASDDNLNSLQVKLKS----GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIV-TTR 158 (206)
Q Consensus 91 ~~~~~~~~-------~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii-TTR 158 (206)
...+.... ........+++...+.+ -+.+++-++|+|+++..+...++.|...+..-...+.+|+ ||+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00000000 00112223344333321 1234566889999998778888888888886656665554 545
Q ss_pred ChHHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 159 NQGVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 159 ~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
...+... .....++++.+++.++....+.+.
T Consensus 161 ~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~i 192 (614)
T PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYV 192 (614)
T ss_pred chhchHHHHhhhheeecCCCCHHHHHHHHHHH
Confidence 4444432 223357999999999988888754
No 86
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=6.7e-06 Score=71.24 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
..-+.|+|++|+|||+|++++++...... +...+.... .... .+.++..+. ..-+|++||++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l---~~~~----~~~f~~~~~-~~dvLiIDDiq 212 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAI---RSGE----MQRFRQFYR-NVDALFIEDIE 212 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHH---hcch----HHHHHHHcc-cCCEEEEcchh
Confidence 35688999999999999999987653211 111111000 0001 112333333 34588899998
Q ss_pred CCCcccH--HHHHhhccc-CCCCcEEEEeCCCh-HH--------HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 131 KDKYVDW--TNQRVLFVA-VASRRKVIVTTRNQ-GV--------TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 131 ~~~~~~~--~~l~~~l~~-~~~gs~IiiTTR~~-~v--------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
......+ +.+...+.. ...|..||+||... .- ..-+.....+.+.+++.++...++.+.+
T Consensus 213 ~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred hhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 5432222 223322211 12345688887542 21 1112223478999999999999998765
No 87
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=5e-06 Score=72.16 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGD 128 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 128 (206)
..-+.|+|..|+|||+|++++++...... +...+.... .. .....+.+++.++ ..-+||+||
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l--~~---~~~~~~~~~~~~~-~~dvLiIDD 214 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL--QK---THKEIEQFKNEIC-QNDVLIIDD 214 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH--HH---hhhHHHHHHHHhc-cCCEEEEec
Confidence 34689999999999999999887442211 222221111 00 0011223333333 244888999
Q ss_pred CCCCCc-ccH-HHHHhhccc-CCCCcEEEEeCCChH-HH--------HhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 129 MWKDKY-VDW-TNQRVLFVA-VASRRKVIVTTRNQG-VT--------SIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 129 v~~~~~-~~~-~~l~~~l~~-~~~gs~IiiTTR~~~-v~--------~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+..... ..+ +.+...+.. ...|..||+|+.... .. .-+...-++.+++++.++-.+++.+.+
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 975432 222 233333321 134456888876432 21 112223467899999999999998875
No 88
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.2e-05 Score=71.19 Aligned_cols=158 Identities=10% Similarity=0.102 Sum_probs=96.4
Q ss_pred HHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH------
Q 039853 17 FKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------ 89 (206)
Q Consensus 17 ~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------ 89 (206)
..+..| .-..++|.+.. ++.|.+++.... -.+.+.++|+.|+|||++|+.++...--..
T Consensus 9 ~~KyRP~~f~dIiGQe~~--------v~~L~~aI~~~r------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHI--------VQTLKNIIKSNK------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred HHHhCCCCHHHhcCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 344444 44568899998 888888886543 346788999999999999988765431100
Q ss_pred ---HHhh-hCCCC-----CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE-EE
Q 039853 90 ---IHNT-ISPET-----ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK-VI 154 (206)
Q Consensus 90 ---i~~~-~~~~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-Ii 154 (206)
-... .+... ........+++.+ +.+.+ .+++-++|+|+++..+...+..|+..+........ |+
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 0000 01000 0001112232222 22222 35667899999997777788888887775544544 44
Q ss_pred EeCCChHHHH-hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 155 VTTRNQGVTS-IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 155 iTTR~~~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|++...+.. .......+++.+++.++..+.+...
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHH
Confidence 4555555543 2333357999999999988877653
No 89
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.9e-05 Score=69.17 Aligned_cols=160 Identities=10% Similarity=-0.013 Sum_probs=98.1
Q ss_pred HHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH------
Q 039853 17 FKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------ 89 (206)
Q Consensus 17 ~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------ 89 (206)
..+.-| .-..++|.+.. ++.|..++.... -.+.+.++|+.|+||||+|+.+++......
T Consensus 7 ~~kyRP~~f~diiGqe~i--------v~~L~~~i~~~~------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p 72 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFV--------VETLKHSIESNK------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP 72 (563)
T ss_pred HHHhCCCCHHHccCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC
Confidence 344444 55568899998 889999886543 346799999999999999998876642110
Q ss_pred -----HHhhhCCC-C------CCCCCCCHHHHHHHH---H-hhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEE
Q 039853 90 -----IHNTISPE-T------ASASDDNLNSLQVKL---K-SGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKV 153 (206)
Q Consensus 90 -----i~~~~~~~-~------~~~~~~~~~~~~~~l---~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 153 (206)
-...+... . ........++..+.. . .-..+++-++|+|+++..+...++.|...+......+.+
T Consensus 73 C~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vf 152 (563)
T PRK06647 73 CGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVF 152 (563)
T ss_pred CccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEE
Confidence 00111000 0 001112233333221 1 112456668999999977777788888887765555555
Q ss_pred EEeC-CChHHHHh-cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 154 IVTT-RNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 154 iiTT-R~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|.+| ....+... ......+++.+++.++..+.+.+.+
T Consensus 153 I~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 153 IFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred EEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHH
Confidence 5544 43444322 2223468999999988888777654
No 90
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.9e-05 Score=67.25 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=90.8
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH----H------H-HH
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV----N------S-IH 91 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~------~-i~ 91 (206)
.-..++|.+.. .+.|.+++.... -...+.++|+.|+||||+|+.++....- . + -.
T Consensus 14 ~f~diiGq~~i--------~~~L~~~i~~~~------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 14 FFKEVIGQEIV--------VRILKNAVKLQR------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred cHHHccChHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 44567899998 888888886543 2457789999999999999887654321 0 0 00
Q ss_pred hhhCC-CC------CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEE-eCC
Q 039853 92 NTISP-ET------ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIV-TTR 158 (206)
Q Consensus 92 ~~~~~-~~------~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Iii-TTR 158 (206)
..+.. .. ........+... .+.+.. .+++-++|+|+++..+...++.+...+....+...+|+ ||+
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 00100 00 000112222222 222222 35667999999987666677777777765544554444 444
Q ss_pred ChHHHH-hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 159 NQGVTS-IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 159 ~~~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
...+.. .......+.+.+++.++....+.+.
T Consensus 159 ~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i 190 (486)
T PRK14953 159 YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRI 190 (486)
T ss_pred HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHH
Confidence 433332 2222357899999999888777764
No 91
>PRK08116 hypothetical protein; Validated
Probab=98.19 E-value=6.1e-06 Score=66.89 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=52.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
.-+.++|.+|+|||.||.++++....+. ++..+........... ...+.+.+.+- =||||||+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~----~~~~~~~l~~~-dlLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKED----ENEIIRSLVNA-DLLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcccccc----HHHHHHHhcCC-CEEEEecccC
Confidence 4689999999999999999988753222 3443322110001111 11233334433 3899999953
Q ss_pred CCcccHHH--HHhhccc-CCCCcEEEEeCCCh
Q 039853 132 DKYVDWTN--QRVLFVA-VASRRKVIVTTRNQ 160 (206)
Q Consensus 132 ~~~~~~~~--l~~~l~~-~~~gs~IiiTTR~~ 160 (206)
.....|.. +...+.. ...|..+|+||...
T Consensus 190 e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 34445544 3333321 23556689998753
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=9.1e-06 Score=72.63 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=95.2
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..+.-| .-..++|.+.. .+.|.+++.... -...+.++|+.|+||||+|+.+++...-..
T Consensus 6 l~~k~RP~~f~~iiGq~~v--------~~~L~~~i~~~~------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~ 71 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHV--------SRTLQNAIDTGR------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAE 71 (576)
T ss_pred HHHHhCCCCHHHccCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC
Confidence 3444444 45578899988 888888886543 246788999999999999988765532100
Q ss_pred ------HHhhhCCCC-------CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 90 ------IHNTISPET-------ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 90 ------i~~~~~~~~-------~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
....+.... ........++..+ +.+.+ .+++-++|+|+++..+....+.|...+......+
T Consensus 72 ~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~ 150 (576)
T PRK14965 72 PCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV 150 (576)
T ss_pred CCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence 111110000 0011122233222 22222 3455689999999777777888888887655555
Q ss_pred EEE-EeCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhh
Q 039853 152 KVI-VTTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 152 ~Ii-iTTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
.+| +||....+...+ .....+++.+++.++....+..
T Consensus 151 ~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 151 KFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRY 189 (576)
T ss_pred EEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHH
Confidence 554 455555554332 2234688888988887766654
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.5e-05 Score=70.28 Aligned_cols=158 Identities=11% Similarity=0.116 Sum_probs=93.6
Q ss_pred Hhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--------
Q 039853 18 KKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------- 88 (206)
Q Consensus 18 ~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------- 88 (206)
.+..+ .-..++|.+.. .+.|..++.... -...+.++|+.|+||||+|+.+++...-.
T Consensus 8 ~kyRP~~f~~liGq~~i--------~~~L~~~l~~~r------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14948 8 HKYRPQRFDELVGQEAI--------ATTLKNALISNR------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE 73 (620)
T ss_pred HHhCCCcHhhccChHHH--------HHHHHHHHHcCC------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC
Confidence 34434 34567888888 888888886543 23578999999999999999886654210
Q ss_pred ----H-HHhhhCCCC-------CCCCCCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcE
Q 039853 89 ----S-IHNTISPET-------ASASDDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRK 152 (206)
Q Consensus 89 ----~-i~~~~~~~~-------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 152 (206)
+ ....+.... ........+.+.+.+... +.+++-++|+|+++..+...+..|+..+........
T Consensus 74 ~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tv 153 (620)
T PRK14948 74 PCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVV 153 (620)
T ss_pred CCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeE
Confidence 0 111111000 001122333443333211 124566899999997777788888888875544554
Q ss_pred EEE-eCCChHHHH-hcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 153 VIV-TTRNQGVTS-IMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 153 Iii-TTR~~~v~~-~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+|+ |+....+.. .......+++..++.++....+.+.
T Consensus 154 fIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 154 FVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEI 192 (620)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHH
Confidence 444 444333332 2222346788888888877766653
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=5.8e-06 Score=73.58 Aligned_cols=121 Identities=9% Similarity=0.000 Sum_probs=69.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHH-------H-----HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVN-------S-----IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDM 129 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-------~-----i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 129 (206)
..+.|+|..|+|||.|++++++..... + ++..+.... ..... +.+++.+.+ .-+|+|||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al---~~~~~----~~f~~~y~~-~DLLlIDDI 386 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSI---RDGKG----DSFRRRYRE-MDILLVDDI 386 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHH---HhccH----HHHHHHhhc-CCEEEEehh
Confidence 348999999999999999988765321 1 232221111 00111 123333332 358899999
Q ss_pred CCCCc-ccHHH-HHhhccc-CCCCcEEEEeCCChH---------HHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 130 WKDKY-VDWTN-QRVLFVA-VASRRKVIVTTRNQG---------VTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 130 ~~~~~-~~~~~-l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+.... ..|.. |...+.. ...|..|||||+... +..-+...-++.|.+.+.+.-.+++.+++
T Consensus 387 q~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 387 QFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 85422 22322 2222221 133556888887521 22222233578999999999999998875
No 95
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.17 E-value=1.1e-05 Score=69.09 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=67.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGD 128 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 128 (206)
...+.|+|.+|+|||+|++++++...... +...+.... ...... .+.+.++. .-+|+|||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~---~~~~~~----~~~~~~~~-~dlLiiDD 207 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNAL---RNNKME----EFKEKYRS-VDLLLIDD 207 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHH---HcCCHH----HHHHHHHh-CCEEEEeh
Confidence 35689999999999999999887653221 211111110 001111 22223322 34889999
Q ss_pred CCCCCcc-cH-HHHHhhcccC-CCCcEEEEeCCC-hHHHH--------hcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 129 MWKDKYV-DW-TNQRVLFVAV-ASRRKVIVTTRN-QGVTS--------IMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 129 v~~~~~~-~~-~~l~~~l~~~-~~gs~IiiTTR~-~~v~~--------~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
++..... .+ ..+...+... ..|..+|+||.. +.-.. -+....++.+++.+.++-..++.+.+
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 9843222 11 2233333211 234567887754 22111 11122368999999999999998875
No 96
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.16 E-value=9.7e-06 Score=70.47 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGD 128 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 128 (206)
..-+.|+|.+|+|||+|++++++...... +...+.... ..... ..+.+.++ +.-+|++||
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~---~~~~~----~~~~~~~~-~~dlLiiDD 219 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNAL---RNNTM----EEFKEKYR-SVDVLLIDD 219 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH---HcCcH----HHHHHHHh-cCCEEEEeh
Confidence 35689999999999999999987754321 221111110 00111 12233333 244899999
Q ss_pred CCCCCccc--HHHHHhhccc-CCCCcEEEEeCCChH--H-------HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 129 MWKDKYVD--WTNQRVLFVA-VASRRKVIVTTRNQG--V-------TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 129 v~~~~~~~--~~~l~~~l~~-~~~gs~IiiTTR~~~--v-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
++...... ...+...+.. ...|..|++||.... + ..-+....++.+++.+.++-.+++++.+
T Consensus 220 i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 220 IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 97432211 1233332221 123445888776532 1 1112223478999999999999999876
No 97
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.15 E-value=3.9e-05 Score=70.55 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=88.0
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------ 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------ 89 (206)
...++|++.. ++.+.+.+...... .++....++.++|++|+|||+||+.++.......
T Consensus 453 ~~~v~GQ~~a--------i~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 453 KAKIFGQDEA--------IDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKH 524 (731)
T ss_pred hcceeCcHHH--------HHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcc
Confidence 4567888888 77777777532210 0122345789999999999999998876552111
Q ss_pred -HHhhhCCCCCCCCCCCHHHHHHHHHhhhCC-ceEEEEEcCCCCCCcccHHHHHhhcccC-----------CCCcEEEEe
Q 039853 90 -IHNTISPETASASDDNLNSLQVKLKSGLSR-KKFQLASGDMWKDKYVDWTNQRVLFVAV-----------ASRRKVIVT 156 (206)
Q Consensus 90 -i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiT 156 (206)
....++... .....+ ....+.+.++. ...+++||+++..+++.++.|...+..+ -..+.||+|
T Consensus 525 ~~~~lig~~~---gyvg~~-~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 525 TVSRLIGAPP---GYVGFE-QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred cHHHHhcCCC---CCcccc-hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 111111111 111111 01123333333 3469999999977788888877766543 123446667
Q ss_pred CCChH--H--------------------HHhcC------CCCceeCCCCCHHHHHHHHhhc
Q 039853 157 TRNQG--V--------------------TSIMG------TMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 157 TR~~~--v--------------------~~~~~------~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
|.... + ...+. -..++.+.+|+.++..+++...
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~ 661 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKF 661 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHH
Confidence 63310 0 11111 1247889999998888887653
No 98
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.14 E-value=2.7e-05 Score=58.39 Aligned_cols=130 Identities=17% Similarity=0.095 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------HHhhhCCCC----CCCC-
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--------------IHNTISPET----ASAS- 102 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------i~~~~~~~~----~~~~- 102 (206)
.+.|.+.+..+. -+..+.++|+.|+||+++|..+++..--.. +...-.... ....
T Consensus 6 ~~~L~~~~~~~~------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 6 IELLKNLIKSGR------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp HHHHHHHHHCTC--------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred HHHHHHHHHcCC------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 666666665543 356889999999999999987765431110 111111100 0011
Q ss_pred -CCCHHHHHHHHHhhhC-----CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH-HH-HhcCCCCceeC
Q 039853 103 -DDNLNSLQVKLKSGLS-----RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG-VT-SIMGTMPAYEL 174 (206)
Q Consensus 103 -~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~-~~~~~~~~~~l 174 (206)
....++.. .+.+.+. ++.-.+|+|+++..+.+.+..|+..+.....++.+|++|.+.. +. ........+++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRF 158 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEec
Confidence 33455555 4555443 3466899999998889999999999988888888888877644 33 33333345676
Q ss_pred CCCC
Q 039853 175 KKLV 178 (206)
Q Consensus 175 ~~L~ 178 (206)
.+|+
T Consensus 159 ~~ls 162 (162)
T PF13177_consen 159 RPLS 162 (162)
T ss_dssp ----
T ss_pred CCCC
Confidence 6654
No 99
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=4.3e-05 Score=68.10 Aligned_cols=160 Identities=11% Similarity=0.089 Sum_probs=95.4
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----- 89 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----- 89 (206)
+..+.-| .-..++|++.. .+.|.+++.... -.+.+.++|+.|.|||++|+.+.....-..
T Consensus 6 l~~k~rP~~f~~viGq~~v--------~~~L~~~i~~~~------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~ 71 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHI--------TKTLKNAIKQGK------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE 71 (559)
T ss_pred HHHHhCCCcHHhccCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 3444444 55678899999 889988887654 246788999999999999988764431100
Q ss_pred ------HHhhhCCCC-------CCCCCCCHHHHHHHHHhh-----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 90 ------IHNTISPET-------ASASDDNLNSLQVKLKSG-----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 90 ------i~~~~~~~~-------~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
....+.... ........+...+ +.+. ..++.-++|+|+++..+...+..|...+.......
T Consensus 72 pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ 150 (559)
T PRK05563 72 PCNECEICKAITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV 150 (559)
T ss_pred CCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe
Confidence 111111000 0001122332222 2222 23456788999999777778888887776544444
Q ss_pred EEE-EeCCChHHHHh-cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 152 KVI-VTTRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 152 ~Ii-iTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.+| .||....+... ......+++.+++.++....+...+
T Consensus 151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHH
Confidence 434 45554444332 2223468888999888877776543
No 100
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.12 E-value=2.3e-06 Score=65.15 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
..-+.++|.+|+|||.||.++.+....+. ++..+.... .........+.+. +--||||||+-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~---~~~~~~~~~~~l~-----~~dlLilDDlG 118 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR---SDGSYEELLKRLK-----RVDLLILDDLG 118 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH---CCTTHCHHHHHHH-----TSSCEEEETCT
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc---cccchhhhcCccc-----cccEecccccc
Confidence 35699999999999999998876653322 666665443 2222333333332 23688999987
Q ss_pred CCCcccHHH--HHhhccc-CCCCcEEEEeCCCh
Q 039853 131 KDKYVDWTN--QRVLFVA-VASRRKVIVTTRNQ 160 (206)
Q Consensus 131 ~~~~~~~~~--l~~~l~~-~~~gs~IiiTTR~~ 160 (206)
......|.. +...+.. ..++ .+||||...
T Consensus 119 ~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 119 YEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred eeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 443334432 2222211 1234 477788753
No 101
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.12 E-value=1.2e-05 Score=73.03 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------------HHhhhCCCC---
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--------------------IHNTISPET--- 98 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------i~~~~~~~~--- 98 (206)
..+|.+.|... .+.+.+.|..++|.|||||+..+........ ++..+....
T Consensus 24 R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~ 97 (894)
T COG2909 24 RPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTL 97 (894)
T ss_pred cHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccc
Confidence 44456666443 2679999999999999999988753111111 444444322
Q ss_pred --------CCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCCcccHHH-HHhhcccCCCCcEEEEeCCChHHHHhcC
Q 039853 99 --------ASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDKYVDWTN-QRVLFVAVASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 99 --------~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~IiiTTR~~~v~~~~~ 167 (206)
......+...+...+..-+. .++.++||||.+-.+....+. +...+.....+-.+++|||.+.-....+
T Consensus 98 ~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 98 GDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccc
Confidence 00112233334444444333 357899999988654444443 3333444467888999999865332211
Q ss_pred ---CCCceeCC----CCCHHHHHHHHhhcc
Q 039853 168 ---TMPAYELK----KLVNDSCRLIFSQHP 190 (206)
Q Consensus 168 ---~~~~~~l~----~L~~~~a~~Lf~~~a 190 (206)
....++++ .++.+|+.++|...-
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 11223332 478899999998763
No 102
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.11 E-value=2e-05 Score=62.45 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=57.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC-CcccHHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD-KYVDWTN 139 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~ 139 (206)
..-+.+||..|.|||+|++++.+....+. ++-+.... .+..+...+.+.++. ...||+|.+||+... +...+..
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~G-LRlIev~k--~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~ 126 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQG-LRLIEVSK--EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKA 126 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcC-ceEEEECH--HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHH
Confidence 35678899999999999999887765443 11111111 223344444444442 346999999998743 4455677
Q ss_pred HHhhcccC---CCCcEEEE-eCCChHH
Q 039853 140 QRVLFVAV---ASRRKVIV-TTRNQGV 162 (206)
Q Consensus 140 l~~~l~~~---~~gs~Iii-TTR~~~v 162 (206)
++..|..+ .+...+|. ||..+++
T Consensus 127 LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 127 LKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred HHHHhcCccccCCCcEEEEEecchhhc
Confidence 77666532 23333444 5544443
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=1.6e-05 Score=68.87 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=68.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGD 128 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 128 (206)
..-+.|+|.+|+|||+|++++++...... ++..+.... ...... .+.+.+....-+|++||
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~---~~~~~~----~f~~~~~~~~dvLlIDD 202 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSM---KEGKLN----EFREKYRKKVDVLLIDD 202 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH---hcccHH----HHHHHHHhcCCEEEEec
Confidence 34599999999999999999988653221 222221111 011111 23333333456899999
Q ss_pred CCCC-CcccH-HHHHhhccc-CCCCcEEEEeCC-ChHHHHh--------cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 129 MWKD-KYVDW-TNQRVLFVA-VASRRKVIVTTR-NQGVTSI--------MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 129 v~~~-~~~~~-~~l~~~l~~-~~~gs~IiiTTR-~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
++.. +...+ ..+...+.. ...|..||+||. .+.-... +...-++.+++.+.+.-..++++.+
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 9843 11111 223222221 123446888874 3322111 1222467899999999999998875
No 104
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=3.4e-05 Score=69.38 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=44.1
Q ss_pred Hhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 18 KKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 18 ~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
.+..| ....++|.++. ++.+..|+..... .....+++.|+|++|+||||+++.++......
T Consensus 76 eKyrP~~ldel~~~~~k--------i~~l~~~l~~~~~--~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 76 EKYKPETQHELAVHKKK--------IEEVETWLKAQVL--ENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred HHhCCCCHHHhcCcHHH--------HHHHHHHHHhccc--ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 34444 45567888888 8888888865432 12234689999999999999999998776443
No 105
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.10 E-value=1.5e-05 Score=68.02 Aligned_cols=123 Identities=14% Similarity=0.053 Sum_probs=69.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 132 (206)
.++-+.++|++|.|||+||+++++.....+ +..... ......+.+.+.......+.+|++|+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i 250 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSI 250 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhh
Confidence 467899999999999999999987654332 211111 111122233333333457899999998732
Q ss_pred C------c----cc----HHHHHhhccc--CCCCcEEEEeCCChHHH-H-hcC---CCCceeCCCCCHHHHHHHHhhc
Q 039853 133 K------Y----VD----WTNQRVLFVA--VASRRKVIVTTRNQGVT-S-IMG---TMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 133 ~------~----~~----~~~l~~~l~~--~~~gs~IiiTTR~~~v~-~-~~~---~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
- . .. +..+...+.. ...+..||.||...+.. . ..+ -...+.++..+.++..++|+.+
T Consensus 251 ~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 251 ATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred ccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHH
Confidence 0 0 01 1222232221 12355677777654332 1 222 2245788888888888888755
No 106
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.09 E-value=3.8e-05 Score=67.58 Aligned_cols=124 Identities=12% Similarity=0.018 Sum_probs=69.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 132 (206)
.++-+.++|++|.|||+||++++....... +..... ......+...+.......+++|++|+++..
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~-------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l 159 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAV 159 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh-------cccHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 345689999999999999999987653322 111111 112223334444444556789999999742
Q ss_pred C----------cccHHH----HHhhccc--CCCCcEEEEeCCChHH-HH-hcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 133 K----------YVDWTN----QRVLFVA--VASRRKVIVTTRNQGV-TS-IMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 133 ~----------~~~~~~----l~~~l~~--~~~gs~IiiTTR~~~v-~~-~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. ...+.. +...+.. ...+-.||.||..... -. ..+ -...+.++..+.++-.++|..+.
T Consensus 160 ~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 160 GRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred hhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence 1 011112 2222221 1233345556655331 11 111 22468888888888888887764
No 107
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.09 E-value=1.7e-05 Score=69.54 Aligned_cols=130 Identities=14% Similarity=0.022 Sum_probs=69.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH---------HHhhhCCCC-CCCCCCCHHHHHHHHHhhh-----CCceEEE
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------IHNTISPET-ASASDDNLNSLQVKLKSGL-----SRKKFQL 124 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i~~~~~~~~-~~~~~~~~~~~~~~l~~~l-----~~kr~Ll 124 (206)
.++-+.++|++|.|||++|+++++...... ++. +.... ...-..........+.+.. .++++++
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~II 293 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIV 293 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceE
Confidence 356799999999999999999988763321 110 00000 0000001111111221111 2468999
Q ss_pred EEcCCCCCC-------ccc-----HHHHHhhcccC--CCCcEEEEeCCChHHHH--hcCC---CCceeCCCCCHHHHHHH
Q 039853 125 ASGDMWKDK-------YVD-----WTNQRVLFVAV--ASRRKVIVTTRNQGVTS--IMGT---MPAYELKKLVNDSCRLI 185 (206)
Q Consensus 125 VlDdv~~~~-------~~~-----~~~l~~~l~~~--~~gs~IiiTTR~~~v~~--~~~~---~~~~~l~~L~~~~a~~L 185 (206)
+||+++..- ..+ +..+...+... ..+..||.||....... ..++ ...+.++..+.++..++
T Consensus 294 fIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~I 373 (512)
T TIGR03689 294 FFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADI 373 (512)
T ss_pred EEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHH
Confidence 999998420 111 22343333322 13444555665433221 1221 23589999999999999
Q ss_pred Hhhcc
Q 039853 186 FSQHP 190 (206)
Q Consensus 186 f~~~a 190 (206)
|.++.
T Consensus 374 l~~~l 378 (512)
T TIGR03689 374 FSKYL 378 (512)
T ss_pred HHHHh
Confidence 98874
No 108
>CHL00176 ftsH cell division protein; Validated
Probab=98.09 E-value=2.2e-05 Score=70.78 Aligned_cols=142 Identities=11% Similarity=0.022 Sum_probs=78.1
Q ss_pred HHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHH
Q 039853 42 EEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVK 112 (206)
Q Consensus 42 ~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~ 112 (206)
+.++++++...... .+...++-+.++|++|.|||+||++++......+ +..... ......+...
T Consensus 195 l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~-------g~~~~~vr~l 267 (638)
T CHL00176 195 FEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV-------GVGAARVRDL 267 (638)
T ss_pred HHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh-------hhhHHHHHHH
Confidence 55566655433210 0122356799999999999999999987653322 111110 1112233344
Q ss_pred HHhhhCCceEEEEEcCCCCCC----------ccc----HHHHHhhccc--CCCCcEEEEeCCChHHHH--hcCC---CCc
Q 039853 113 LKSGLSRKKFQLASGDMWKDK----------YVD----WTNQRVLFVA--VASRRKVIVTTRNQGVTS--IMGT---MPA 171 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~gs~IiiTTR~~~v~~--~~~~---~~~ 171 (206)
+.......+++|++|+++... ... +..+...+.. ...+-.||.||....... ..++ ...
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQ 347 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceE
Confidence 445556678999999997431 111 2222222221 233445666665543322 1121 246
Q ss_pred eeCCCCCHHHHHHHHhhcc
Q 039853 172 YELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 172 ~~l~~L~~~~a~~Lf~~~a 190 (206)
+.++..+.++-.++|+.++
T Consensus 348 I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHA 366 (638)
T ss_pred EEECCCCHHHHHHHHHHHH
Confidence 7888888888888888765
No 109
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.08 E-value=2.4e-05 Score=72.83 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=40.9
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
+++||+.+ ++.|...+..-.. +...++.+.|.+|||||+|+++|......+
T Consensus 1 ~l~GRe~e--------v~~Ll~~f~~v~~----g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETE--------LAQLLAAFDRVSK----GRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhH--------HHHHHHHHHHHhC----CCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 36899999 9998888865432 455799999999999999999997666433
No 110
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=3.3e-05 Score=64.47 Aligned_cols=142 Identities=12% Similarity=0.029 Sum_probs=86.0
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH-H---------H-HHhhhCCCC--------CCCC
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV-N---------S-IHNTISPET--------ASAS 102 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~---------~-i~~~~~~~~--------~~~~ 102 (206)
.+.|...+.... -.....++|+.|+|||++|..+.+..-- . + ....+.... ....
T Consensus 15 ~~~L~~~~~~~~------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~ 88 (329)
T PRK08058 15 VKMLQNSIAKNR------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQ 88 (329)
T ss_pred HHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccc
Confidence 666666664433 3578899999999999999877544310 0 0 000110000 0011
Q ss_pred CCCHHHHHHHHHhh----hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHHH-hcCCCCceeCCC
Q 039853 103 DDNLNSLQVKLKSG----LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVTS-IMGTMPAYELKK 176 (206)
Q Consensus 103 ~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~-~~~~~~~~~l~~ 176 (206)
....++..+.+... ..+.+-++|+|+++..+....+.++..+..-..++.+|++|.+ ..+.. .......+++.+
T Consensus 89 ~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~ 168 (329)
T PRK08058 89 SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRP 168 (329)
T ss_pred cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCC
Confidence 22334444332211 2345667999999977888888888888877777767666654 33332 222335799999
Q ss_pred CCHHHHHHHHhhc
Q 039853 177 LVNDSCRLIFSQH 189 (206)
Q Consensus 177 L~~~~a~~Lf~~~ 189 (206)
++.++..+.+...
T Consensus 169 ~~~~~~~~~L~~~ 181 (329)
T PRK08058 169 LPPESLIQRLQEE 181 (329)
T ss_pred CCHHHHHHHHHHc
Confidence 9999998888764
No 111
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.08 E-value=2.4e-05 Score=72.93 Aligned_cols=125 Identities=12% Similarity=0.052 Sum_probs=71.9
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--H--------HH
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN--S--------IH 91 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~--------i~ 91 (206)
...++|++.. ++.+.+.+...... .++....++.++|++|+|||.||+.++...... . +.
T Consensus 565 ~~~v~GQ~~A--------v~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 565 AERVIGQDHA--------LEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred cCeEcChHHH--------HHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 4467888888 88887777542110 022345589999999999999998765443110 0 11
Q ss_pred hh------hCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEE
Q 039853 92 NT------ISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVI 154 (206)
Q Consensus 92 ~~------~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~Ii 154 (206)
.. ++...--........+.+.+++ ....+|+||+++..+++.++.|...+..+. ..+.||
T Consensus 637 ~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 637 EAHTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred hhhhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 11 1111100000011223333332 345799999998777777887777665442 456677
Q ss_pred EeCCC
Q 039853 155 VTTRN 159 (206)
Q Consensus 155 iTTR~ 159 (206)
+||..
T Consensus 714 ~TSNl 718 (852)
T TIGR03345 714 LTSNA 718 (852)
T ss_pred EeCCC
Confidence 78654
No 112
>PRK12377 putative replication protein; Provisional
Probab=98.08 E-value=1.2e-05 Score=64.47 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=49.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..+.++|.+|+|||+||.++++....+. ++..+.... ....... .+.+.+ .+.-||||||+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~--~~~~~~~----~~l~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY--DNGQSGE----KFLQEL-CKVDLLVLDEIGI 174 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHH--hccchHH----HHHHHh-cCCCEEEEcCCCC
Confidence 5799999999999999999888764321 333222111 0000111 122222 2456999999953
Q ss_pred CCcccHHH--HHhhcccC-CCCcEEEEeCCC
Q 039853 132 DKYVDWTN--QRVLFVAV-ASRRKVIVTTRN 159 (206)
Q Consensus 132 ~~~~~~~~--l~~~l~~~-~~gs~IiiTTR~ 159 (206)
.....|.. +...+... .+.-.+||||..
T Consensus 175 ~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 175 QRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33344443 33333322 223347778764
No 113
>PRK06526 transposase; Provisional
Probab=98.08 E-value=5.1e-06 Score=66.80 Aligned_cols=91 Identities=15% Similarity=0.044 Sum_probs=48.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhH-----HH-----HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTV-----NS-----IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----~~-----i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
..-+.++|++|+|||+||.++...... .+ ++..+.... ... .....+... .+.-|||+||+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~---~~~---~~~~~l~~l--~~~dlLIIDD~g 169 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH---HAG---RLQAELVKL--GRYPLLIVDEVG 169 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH---hcC---cHHHHHHHh--ccCCEEEEcccc
Confidence 356899999999999999988655421 11 333332111 111 111222222 234589999997
Q ss_pred CCCcccHH--HHHhhccc-CCCCcEEEEeCCCh
Q 039853 131 KDKYVDWT--NQRVLFVA-VASRRKVIVTTRNQ 160 (206)
Q Consensus 131 ~~~~~~~~--~l~~~l~~-~~~gs~IiiTTR~~ 160 (206)
......+. .+...+.. ..+++ +|+||...
T Consensus 170 ~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 170 YIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 43222222 23333322 23455 88888763
No 114
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.05 E-value=5.4e-05 Score=61.17 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=75.5
Q ss_pred hhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------HHhhhCCCCCCCCC
Q 039853 37 DMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------IHNTISPETASASD 103 (206)
Q Consensus 37 ~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------i~~~~~~~~~~~~~ 103 (206)
.|+.-++++..++.... -+.+.|++|+|||+||+.++....... ++....... ..
T Consensus 6 ~~~~l~~~~l~~l~~g~---------~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~---~~ 73 (262)
T TIGR02640 6 AVKRVTSRALRYLKSGY---------PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYT---RK 73 (262)
T ss_pred HHHHHHHHHHHHHhcCC---------eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccc---hh
Confidence 45566777777776543 467899999999999999876331111 111110000 00
Q ss_pred CCHHHHH----------------HHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccC----------------CCCc
Q 039853 104 DNLNSLQ----------------VKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAV----------------ASRR 151 (206)
Q Consensus 104 ~~~~~~~----------------~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs 151 (206)
...+... ..+..... +...+++|+++..+.+.+..|...+... .++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~f 152 (262)
T TIGR02640 74 KVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEF 152 (262)
T ss_pred hHHHHHHHHhhhhhcccceeecCchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCC
Confidence 0000000 00111111 2358889999876677766666655321 1356
Q ss_pred EEEEeCCChHHH-------HhcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 152 KVIVTTRNQGVT-------SIMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 152 ~IiiTTR~~~v~-------~~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+||+|+...... ........+.+...+.++-.+++..+
T Consensus 153 rvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 153 RVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred EEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh
Confidence 788887753211 01111124667777777777777766
No 115
>PRK10536 hypothetical protein; Provisional
Probab=98.04 E-value=1.5e-05 Score=63.75 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=32.9
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+.+|... ...+..++... ..+.+.|.+|.|||+||.++..+
T Consensus 55 ~~i~p~n~~--------Q~~~l~al~~~---------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEA--------QAHYLKAIESK---------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHH--------HHHHHHHHhcC---------CeEEEECCCCCCHHHHHHHHHHH
Confidence 345567777 77788877442 48999999999999999876653
No 116
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.04 E-value=3.3e-05 Score=54.89 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
..+.|+|++|+||||+|+.++......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 578999999999999999988776543
No 117
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=5.3e-05 Score=70.75 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=68.7
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH----------H-
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------I- 90 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i- 90 (206)
...++|.+.. ++.+...+...... .++.....+.++|++|+|||+||+.+++...... +
T Consensus 567 ~~~viGQ~~a--------i~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEA--------VEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHH--------HHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 3457888888 77777766532210 0122335789999999999999998875431110 1
Q ss_pred ----HhhhCCCCCCCCCCCHHHHHHHHHhhhCCc-eEEEEEcCCCCCCcccHHHHHhhcccC-----------CCCcEEE
Q 039853 91 ----HNTISPETASASDDNLNSLQVKLKSGLSRK-KFQLASGDMWKDKYVDWTNQRVLFVAV-----------ASRRKVI 154 (206)
Q Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~Ii 154 (206)
...+.... +.....+. ...+.+.++.+ .-+|+||++...+...+..+...+..+ ...+.||
T Consensus 639 ~~~~~~~LiG~~--pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 639 EKHSVSRLVGAP--PGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred hhhhHHHHhCCC--Ccccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 11111111 01001000 01122222222 358999999877788888877766533 1233477
Q ss_pred EeCCC
Q 039853 155 VTTRN 159 (206)
Q Consensus 155 iTTR~ 159 (206)
+||..
T Consensus 716 ~TSN~ 720 (857)
T PRK10865 716 MTSNL 720 (857)
T ss_pred EeCCc
Confidence 78765
No 118
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.03 E-value=1.1e-05 Score=69.64 Aligned_cols=124 Identities=15% Similarity=0.045 Sum_probs=70.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 132 (206)
..+-+.++|++|.|||+||+++++.....+ +..... ......+...+.......+++++||+++..
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~-------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l 288 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYL-------GDGPKLVRELFRVAEENAPSIVFIDEIDAI 288 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhc-------chHHHHHHHHHHHHHhCCCcEEeHHHHHHH
Confidence 456788999999999999999988654332 111111 111122233333333456889999997631
Q ss_pred C--------c---c---cHHHHHhhccc--CCCCcEEEEeCCChHHHHh--cCC---CCceeCCCCCHHHHHHHHhhcc
Q 039853 133 K--------Y---V---DWTNQRVLFVA--VASRRKVIVTTRNQGVTSI--MGT---MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 133 ~--------~---~---~~~~l~~~l~~--~~~gs~IiiTTR~~~v~~~--~~~---~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
- . + .+..+...+.. ...+..||.||........ .++ ...+.++..+.++..++|..+.
T Consensus 289 ~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 289 GTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred hccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 0 0 0 01122222221 1235567777765443322 221 2468899999999999998764
No 119
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=3.3e-05 Score=64.41 Aligned_cols=129 Identities=8% Similarity=-0.027 Sum_probs=81.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHH-------------H--HHhhhCCCC--CC----CCCCCHHHHHHHHHhhh-
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVN-------------S--IHNTISPET--AS----ASDDNLNSLQVKLKSGL- 117 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------~--i~~~~~~~~--~~----~~~~~~~~~~~~l~~~l- 117 (206)
-...+.++|+.|+|||++|+.++...--. + +...-.... .. ......++..+ +.+.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~~~ 99 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE-LVSFVV 99 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-HHHHHh
Confidence 35689999999999999998776554110 0 111111000 00 01234455444 33333
Q ss_pred ----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCCh-HHHHh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 118 ----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQ-GVTSI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 118 ----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.+++-.+|+|+++..+....+.+...+..-..++.+|++|.+. .+... ......+.+.+++.+++.+.+...
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 2344456789999888888999998888766677777776653 33322 223357999999999999888765
No 120
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.01 E-value=1.6e-05 Score=63.94 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQV 111 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~ 111 (206)
...+.+++. +..-+.++|.+|+|||.||.++.+...... ++..+.... ........+..
T Consensus 95 ~~~~~~~~~---------~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~--~~~~~~~~l~~ 163 (254)
T COG1484 95 LASLVEFFE---------RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF--DEGRLEEKLLR 163 (254)
T ss_pred HHHHHHHhc---------cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH--hcCchHHHHHH
Confidence 555566664 235699999999999999999988876221 444444333 11111122222
Q ss_pred HHHhhhCCceEEEEEcCCCCCCcccHH
Q 039853 112 KLKSGLSRKKFQLASGDMWKDKYVDWT 138 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~~~~~~~~~ 138 (206)
.+. +-=||||||+--.....|.
T Consensus 164 ~l~-----~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 164 ELK-----KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred Hhh-----cCCEEEEecccCccCCHHH
Confidence 222 2358999998744444444
No 121
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.00 E-value=5.2e-05 Score=70.19 Aligned_cols=146 Identities=13% Similarity=0.054 Sum_probs=73.6
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---------HHhhhCCCCCCCCCCCHHHHHHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------IHNTISPETASASDDNLNSLQVK 112 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~~~ 112 (206)
++.|.+++...... .....+++.++|++|+|||++|+.+++.....+ -...+..............+.+.
T Consensus 329 k~~i~~~~~~~~~~-~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~ 407 (775)
T TIGR00763 329 KERILEYLAVQKLR-GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQG 407 (775)
T ss_pred HHHHHHHHHHHHhh-cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHH
Confidence 77777765422100 112335899999999999999999887763322 00111110100011112233333
Q ss_pred HHhhhCCceEEEEEcCCCCCCcc----cHHHHHhhcc--------cC-------CCCcEEEEeCCChH-HH-HhcCCCCc
Q 039853 113 LKSGLSRKKFQLASGDMWKDKYV----DWTNQRVLFV--------AV-------ASRRKVIVTTRNQG-VT-SIMGTMPA 171 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~--------~~-------~~gs~IiiTTR~~~-v~-~~~~~~~~ 171 (206)
+.... .++-+++||.++..... ....+...+. +. ..+..+|.||.... +. .......+
T Consensus 408 l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~v 486 (775)
T TIGR00763 408 LKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEV 486 (775)
T ss_pred HHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeE
Confidence 43332 23347889998854221 1122322221 11 12333344554422 11 12233357
Q ss_pred eeCCCCCHHHHHHHHhhc
Q 039853 172 YELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 172 ~~l~~L~~~~a~~Lf~~~ 189 (206)
+.+.+++.++-.+++.++
T Consensus 487 i~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 487 IELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EecCCCCHHHHHHHHHHH
Confidence 899999999888888664
No 122
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.00 E-value=8e-06 Score=67.43 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
.+-+.|+|..|+|||.||.++++....+. ++..+.... ...+.... + +.+. +--||||||+-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~---~~~~~~~~---l-~~l~-~~dlLiIDDiG 227 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSI---SDGSVKEK---I-DAVK-EAPVLMLDDIG 227 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHH---hcCcHHHH---H-HHhc-CCCEEEEecCC
Confidence 46799999999999999999988764221 444443222 11111222 2 2222 45689999997
Q ss_pred CCCcccHHH--HHhhc-ccC-CCCcEEEEeCCC
Q 039853 131 KDKYVDWTN--QRVLF-VAV-ASRRKVIVTTRN 159 (206)
Q Consensus 131 ~~~~~~~~~--l~~~l-~~~-~~gs~IiiTTR~ 159 (206)
......|.. +...+ ... ..+-..|+||..
T Consensus 228 ~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 228 AEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 656667764 44433 322 234458888865
No 123
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.9e-05 Score=66.57 Aligned_cols=132 Identities=19% Similarity=0.199 Sum_probs=79.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHH----HHHHHhhhCCceEEEEEcCCCCCCc
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSL----QVKLKSGLSRKKFQLASGDMWKDKY 134 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~kr~LlVlDdv~~~~~ 134 (206)
.....+.+.|++|+|||+||..++....+-+ ++-+.... .-..+.... .+.+.+..+..-..+|+||+. ..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPF-vKiiSpe~--miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiE--rL 610 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPF-VKIISPED--MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIE--RL 610 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCe-EEEeChHH--ccCccHHHHHHHHHHHHHHhhcCcceEEEEcchh--hh
Confidence 4677889999999999999998877665442 22222222 122222222 233344445566789999997 44
Q ss_pred ccHHH------------HHhhcccC-CCCcEEEE--eCCChHHHHhcCC----CCceeCCCCCH-HHHHHHHhhcc-CCC
Q 039853 135 VDWTN------------QRVLFVAV-ASRRKVIV--TTRNQGVTSIMGT----MPAYELKKLVN-DSCRLIFSQHP-SGT 193 (206)
Q Consensus 135 ~~~~~------------l~~~l~~~-~~gs~Iii--TTR~~~v~~~~~~----~~~~~l~~L~~-~~a~~Lf~~~a-f~~ 193 (206)
-+|.. ++-.+... .+|-+++| ||....+...|+- ...+.++.|+. ++..+.++..- |..
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd 690 (744)
T KOG0741|consen 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSD 690 (744)
T ss_pred hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCc
Confidence 44432 33333322 34445544 7777788777652 24688888876 77888777654 444
Q ss_pred CC
Q 039853 194 RE 195 (206)
Q Consensus 194 ~~ 195 (206)
.+
T Consensus 691 ~~ 692 (744)
T KOG0741|consen 691 DE 692 (744)
T ss_pred ch
Confidence 33
No 124
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.97 E-value=3.5e-05 Score=71.14 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCC---------CCCCCCCCCHHHHHHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISP---------ETASASDDNLNSLQVK 112 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~ 112 (206)
+++|.++|...... +.....++.++|++|+||||+|+.++......++--.++. ............+...
T Consensus 331 K~~i~~~l~~~~~~-~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~ 409 (784)
T PRK10787 331 KDRILEYLAVQSRV-NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQK 409 (784)
T ss_pred HHHHHHHHHHHHhc-ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHH
Confidence 88898887632110 1123458999999999999999988765432220000110 0000000111222233
Q ss_pred HHhhhCCceEEEEEcCCCCCCccc----HHHHHhhcccC---------------CCCcEEEEeCCChHHHHh-cCCCCce
Q 039853 113 LKSGLSRKKFQLASGDMWKDKYVD----WTNQRVLFVAV---------------ASRRKVIVTTRNQGVTSI-MGTMPAY 172 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~IiiTTR~~~v~~~-~~~~~~~ 172 (206)
+... ....-+++||.++..+... .+.+...+... -.+..+|.|+....+... .....++
T Consensus 410 l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii 488 (784)
T PRK10787 410 MAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVI 488 (784)
T ss_pred HHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeee
Confidence 3322 2234578899997543322 23444333211 123333445544332221 1233578
Q ss_pred eCCCCCHHHHHHHHhhcc
Q 039853 173 ELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 173 ~l~~L~~~~a~~Lf~~~a 190 (206)
++.+++.++-.++.+++.
T Consensus 489 ~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 489 RLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ecCCCCHHHHHHHHHHhh
Confidence 999999999988887765
No 125
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.96 E-value=7.1e-05 Score=64.05 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=73.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRV 142 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~ 142 (206)
++.|.|+-++|||||++.+........ +--..... ........+....+...-..++.+++||.|. ....|.....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~-iy~~~~d~-~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq--~v~~W~~~lk 114 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEI-IYINFDDL-RLDRIELLDLLRAYIELKEREKSYIFLDEIQ--NVPDWERALK 114 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcce-EEEEecch-hcchhhHHHHHHHHHHhhccCCceEEEeccc--CchhHHHHHH
Confidence 999999999999999965544432110 00000000 0111112222222222222377899999999 8899999998
Q ss_pred hcccCCCCcEEEEeCCChHHHHh------cCCCCceeCCCCCHHHHHH
Q 039853 143 LFVAVASRRKVIVTTRNQGVTSI------MGTMPAYELKKLVNDSCRL 184 (206)
Q Consensus 143 ~l~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~~a~~ 184 (206)
.+.+.++. +|++|+-+...... .+....+.+.||+-.|-..
T Consensus 115 ~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 115 YLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred HHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 88877776 88888777554322 2333578999999988865
No 126
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.95 E-value=3.4e-05 Score=65.59 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=71.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 127 (206)
....+.|||..|.|||.|++++.+...... +...+-... .+.-.+.+++.. .--++++|
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~-------~~~~~~~Fk~~y--~~dlllID 182 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKAL-------RDNEMEKFKEKY--SLDLLLID 182 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHH-------HhhhHHHHHHhh--ccCeeeec
Confidence 467899999999999999999987753322 111110000 001122344444 34488999
Q ss_pred CCCCCCc-ccHHH----HHhhcccCCCCcEEEEeCCChH---------HHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 128 DMWKDKY-VDWTN----QRVLFVAVASRRKVIVTTRNQG---------VTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 128 dv~~~~~-~~~~~----l~~~l~~~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|++.... +.|+. +...+.. .|-.||+|++... +..-+...-++.+.+.+.+.....+.+.+
T Consensus 183 Diq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 9985322 22222 2233332 3337999986522 22223333578999999999999998865
No 127
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.3e-05 Score=70.07 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=81.7
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCC-----CC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPET-----AS 100 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~-----~~ 100 (206)
+-+|-++. +++|++.|--..- ...-.-++++++|+||+|||+|++.++.....+++=-+++.-. .+
T Consensus 324 dHYGLekV--------KeRIlEyLAV~~l-~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 324 DHYGLEKV--------KERILEYLAVQKL-TKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred cccCchhH--------HHHHHHHHHHHHH-hccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 34566666 9999998842211 0112447999999999999999998876654433101111111 00
Q ss_pred CC----CCCHHHHHHHHHhhhCCceEEEEEcCCCCCCc----------------ccHHHHHhhcccC--CCCcEEEEeCC
Q 039853 101 AS----DDNLNSLQVKLKSGLSRKKFQLASGDMWKDKY----------------VDWTNQRVLFVAV--ASRRKVIVTTR 158 (206)
Q Consensus 101 ~~----~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR 158 (206)
.. ..-+..+.+.+++ -+-+.-+++||.++-.+. ++-..|.....+. .-...++|+|-
T Consensus 395 HRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred ccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 00 0111222222222 134567899998874321 1111122111111 11123555664
Q ss_pred Ch-H-H-HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 159 NQ-G-V-TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 159 ~~-~-v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|. + + +.......++++.+-+.++-.+.-+++-
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 42 1 1 2233445789999999999888877764
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=3.5e-05 Score=62.64 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=90.3
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----HHhhhCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-----IHNTISPE 97 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----i~~~~~~~ 97 (206)
.-..+.|.+.. +..|.+.+... ..+....+|++|-|||+-|.+++...--.. ++......
T Consensus 34 t~de~~gQe~v--------V~~L~~a~~~~-------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 34 TFDELAGQEHV--------VQVLKNALLRR-------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred cHHhhcchHHH--------HHHHHHHHhhc-------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 34456788888 88888888763 458999999999999998877665542211 22211111
Q ss_pred CCCC-----CCCCHHHHHHHHHhhhC--Cce-EEEEEcCCCCCCcccHHHHHhhcccCCCCcE-EEEeCCChHHHHhcC-
Q 039853 98 TASA-----SDDNLNSLQVKLKSGLS--RKK-FQLASGDMWKDKYVDWTNQRVLFVAVASRRK-VIVTTRNQGVTSIMG- 167 (206)
Q Consensus 98 ~~~~-----~~~~~~~~~~~l~~~l~--~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-IiiTTR~~~v~~~~~- 167 (206)
..+. ...+...+......... ..+ -.+|||+++....+.|..++..+.+.++.++ |+||+.-..+.....
T Consensus 99 erGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 99 ERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred cccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 1000 01111111111111111 123 3788999998889999999998887665554 455544333322211
Q ss_pred CCCceeCCCCCHHHHHHHHhhcc
Q 039853 168 TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 168 ~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
...-|+.++|.+++..+-++..|
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHH
Confidence 11358899999988877777654
No 129
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=9.2e-05 Score=67.48 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=69.7
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH----------H--
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN----------S-- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------~-- 89 (206)
...++|++.. ++.+.+.+...... +++....+....|+.|||||.||++++...--. .
T Consensus 490 ~~rViGQd~A--------V~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~ 561 (786)
T COG0542 490 KKRVIGQDEA--------VEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM 561 (786)
T ss_pred hcceeChHHH--------HHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH
Confidence 4467888888 77777777543321 244556788889999999999998876443210 0
Q ss_pred ----HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceE-EEEEcCCCCCCcccHHHHHhhcccC
Q 039853 90 ----IHNTISPETASASDDNLNSLQVKLKSGLSRKKF-QLASGDMWKDKYVDWTNQRVLFVAV 147 (206)
Q Consensus 90 ----i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 147 (206)
.-+-++... .-...++ --.|-+..+.++| .+.||.+..-+++-++-|...|.++
T Consensus 562 EkHsVSrLIGaPP---GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 562 EKHSVSRLIGAPP---GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHhCCCC---CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 222223222 1111111 2234555666767 7779999876788888888777654
No 130
>PRK09183 transposase/IS protein; Provisional
Probab=97.92 E-value=9e-06 Score=65.59 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=47.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..+.|+|++|+|||+||..+........ ++..+.... .... +...+...+ .+.-++|+||+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~---~~~~---~~~~~~~~~-~~~dlLiiDdlg~ 175 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQ---RQGR---YKTTLQRGV-MAPRLLIIDEIGY 175 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHH---HCCc---HHHHHHHHh-cCCCEEEEccccc
Confidence 4688999999999999998865432111 222221111 0001 112222222 3446999999974
Q ss_pred CCcccHH--HHHhhccc-CCCCcEEEEeCCC
Q 039853 132 DKYVDWT--NQRVLFVA-VASRRKVIVTTRN 159 (206)
Q Consensus 132 ~~~~~~~--~l~~~l~~-~~~gs~IiiTTR~ 159 (206)
.....+. .+...+.. ..+++ +|+||..
T Consensus 176 ~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 3333332 34443332 23455 8888876
No 131
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.4e-05 Score=67.94 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=50.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..++-|.+||++|.|||.||++++++..+-+ ++..+.. .+...+.+.+.+.-..-+|++++|+++.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG-------ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG-------ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc-------ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 4568899999999999999999999987765 4444433 3344555555566667899999999985
Q ss_pred C
Q 039853 132 D 132 (206)
Q Consensus 132 ~ 132 (206)
.
T Consensus 294 I 294 (802)
T KOG0733|consen 294 I 294 (802)
T ss_pred c
Confidence 4
No 132
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.91 E-value=2.9e-05 Score=60.31 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------------------------
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------------------------- 89 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------------------- 89 (206)
....++.|... .++.+.|++|.|||.||.+.+-+.-.+.
T Consensus 9 Q~~~~~al~~~---------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 9 QKFALDALLNN---------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp HHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred HHHHHHHHHhC---------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 56666767622 5899999999999999977654432111
Q ss_pred ---HHhhhCCCCCCCCCCCHHHHHHH------HHhhhCCc---eEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeC
Q 039853 90 ---IHNTISPETASASDDNLNSLQVK------LKSGLSRK---KFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTT 157 (206)
Q Consensus 90 ---i~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTT 157 (206)
+...+..-. .....+.+.+. -..+++++ ..++|+|.+.+.+..++..+ +.+.+.||+++++=
T Consensus 80 ~~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~G 153 (205)
T PF02562_consen 80 LRPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITG 153 (205)
T ss_dssp THHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE
T ss_pred HHHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEec
Confidence 111111110 11112222211 12344554 46999999987766666655 44466899999974
No 133
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=2.7e-05 Score=63.48 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=66.6
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------- 89 (206)
.+..+|.... .+.++.|.+++..+.. .+.+-+.|+|.+|.|||++++.++..+-...
T Consensus 33 ~~rWIgY~~A-----~~~L~~L~~Ll~~P~~----~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~ 103 (302)
T PF05621_consen 33 ADRWIGYPRA-----KEALDRLEELLEYPKR----HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQM 103 (302)
T ss_pred cCCeecCHHH-----HHHHHHHHHHHhCCcc----cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEec
Confidence 4555665544 1226666776665543 5677899999999999999999886552222
Q ss_pred ------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCC-ceEEEEEcCCCC
Q 039853 90 ------------IHNTISPETASASDDNLNSLQVKLKSGLSR-KKFQLASGDMWK 131 (206)
Q Consensus 90 ------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~ 131 (206)
|+..++... ........+.......|+. +--+||+|.+++
T Consensus 104 P~~p~~~~~Y~~IL~~lgaP~--~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 104 PPEPDERRFYSAILEALGAPY--RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred CCCCChHHHHHHHHHHhCccc--CCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 888887766 4445556666666666654 456899999985
No 134
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=7.4e-05 Score=68.07 Aligned_cols=146 Identities=8% Similarity=0.045 Sum_probs=89.8
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------- 89 (206)
-.+++||++| ++++++.|..... .--.++|.+|+|||++|.-++.+.-...
T Consensus 169 lDPvIGRd~E--------I~r~iqIL~RR~K-------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 169 LDPVIGRDEE--------IRRTIQILSRRTK-------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCcChHHH--------HHHHHHHHhccCC-------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 4468999999 9999999987765 1235689999999998876665542221
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHhhhC-CceEEEEEcCCCCC----C-----cccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 90 IHNTISPETASASDDNLNSLQVKLKSGLS-RKKFQLASGDMWKD----K-----YVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~----~-----~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
+..-+.... -..+.+...+.+.+.++ ..+..|.+|.++.. . .+.-.-+++.|.++.-. +|=.||-+
T Consensus 234 ~g~LvAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~-~IGATT~~ 309 (786)
T COG0542 234 LGSLVAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR-CIGATTLD 309 (786)
T ss_pred HHHHhcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE-EEEeccHH
Confidence 332232222 22344555555555553 45899999998753 1 22233345555533322 35556654
Q ss_pred hHHH------HhcCCCCceeCCCCCHHHHHHHHhh
Q 039853 160 QGVT------SIMGTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 160 ~~v~------~~~~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
+--. ..-+..+.+.+..-+.+++...++-
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 3221 1122346789999999999999864
No 135
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00017 Score=59.74 Aligned_cols=150 Identities=9% Similarity=0.062 Sum_probs=92.8
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--------H-HHhhhCC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN--------S-IHNTISP 96 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~-i~~~~~~ 96 (206)
.++|.+.. ++.+.+.+.... -.....++|+.|+||+++|..+++..--. . +...-.+
T Consensus 5 ~iiGq~~~--------~~~L~~~i~~~r------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 5 NLIGQPLA--------IELLTAAIKQNR------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred HhCCHHHH--------HHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 46788888 888888886553 24799999999999999987765443110 0 0000000
Q ss_pred C-----------C---------------CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcc
Q 039853 97 E-----------T---------------ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFV 145 (206)
Q Consensus 97 ~-----------~---------------~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 145 (206)
. . ........++. +.+.+.+ .+++-++|+|+++..+......++..+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE 149 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE 149 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 0 0 00001112222 2344443 3467789999998778888888888887
Q ss_pred cCCCCcEEEEeCCChHHHHhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 146 AVASRRKVIVTTRNQGVTSIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 146 ~~~~gs~IiiTTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.-.+..-|++|+....+...+ .....+++.+++.++..+.+.+..
T Consensus 150 EPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 150 EPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred CCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 555444444555444443322 333579999999999999998764
No 136
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.89 E-value=0.00011 Score=64.30 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=70.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC----
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD---- 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---- 132 (206)
.++-|.++|++|.|||.+|+++++......+ ...+.... -..+...+.+.+...-...+++|++|+++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~---vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~ 334 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI---VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNS 334 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc---cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccc
Confidence 4578999999999999999999887643320 01111111 1112223333333333357899999998731
Q ss_pred -C---ccc----HHHHHhhcccCCCCcEEEEeCCChHH-HHhc----CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 133 -K---YVD----WTNQRVLFVAVASRRKVIVTTRNQGV-TSIM----GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 133 -~---~~~----~~~l~~~l~~~~~gs~IiiTTR~~~v-~~~~----~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+ ... ...+...+.....+-.||.||.+... ...+ +-...+.++.-+.++-.++|+.+.
T Consensus 335 ~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 335 ESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL 405 (489)
T ss_pred cCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 0 001 11223333333334445557765432 1111 223567888888888888888764
No 137
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.89 E-value=6.5e-05 Score=70.20 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=71.8
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------ 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------ 89 (206)
...++|++.. ++.+.+.+...... .++....++.++|++|+|||++|+.+........
T Consensus 564 ~~~v~GQ~~a--------v~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 564 HERVVGQDEA--------VEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred hcccCCChHH--------HHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 3457888888 78877777643210 0122346788999999999999998876431110
Q ss_pred ---HHhhh-CCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccC-----------CCCcEEE
Q 039853 90 ---IHNTI-SPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAV-----------ASRRKVI 154 (206)
Q Consensus 90 ---i~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~Ii 154 (206)
....+ +....-........+.+.++. ....+++||+++..+++.+..|...+..+ -..+.||
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 11111 111100000011223333322 22358999999988888888888777543 1345577
Q ss_pred EeCCC
Q 039853 155 VTTRN 159 (206)
Q Consensus 155 iTTR~ 159 (206)
+||..
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 78765
No 138
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.88 E-value=6e-05 Score=62.70 Aligned_cols=36 Identities=6% Similarity=0.037 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 121 KFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 121 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
.-++|+|.+.+.++. +++..+.+.+.||||+.|--.
T Consensus 352 ~~FiIIDEaQNLTph---eikTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 352 DSFIIIDEAQNLTPH---ELKTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred cceEEEehhhccCHH---HHHHHHHhccCCCEEEEcCCH
Confidence 469999999865554 455666778999999988543
No 139
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.87 E-value=8.1e-05 Score=56.76 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=37.8
Q ss_pred HHHhhhCCceEEEEEcCCC-CC-CcccHHHHHhhcccCCCCcEEEEeCCChHHHHhcC
Q 039853 112 KLKSGLSRKKFQLASGDMW-KD-KYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~-~~-~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~ 167 (206)
.+.+.+-+++-+|+-|.-- |. ..-.|+-+.-.-.-+..|..|+++|.+..+...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3667777888899999432 22 33445544433334578999999999988877654
No 140
>PHA00729 NTP-binding motif containing protein
Probab=97.86 E-value=8.5e-05 Score=58.42 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH--HHhhh--CCCCCCCCCCCHHHHHHHHHhhhCCc--eEEEEEcCC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS--IHNTI--SPETASASDDNLNSLQVKLKSGLSRK--KFQLASGDM 129 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv 129 (206)
...+.|.|.+|+||||||..+.+...... +.... ........-.+.+.+...+.....+. .=|||+||+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~ 91 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDA 91 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 35789999999999999999887642111 00000 00000012345666777776655432 238999984
No 141
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.86 E-value=4.1e-05 Score=61.14 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=51.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
...+.++|.+|+|||+||.++++...... ++..+..... ....... .+.+.+. +.-|||+||+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~-~~~~~~~----~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS-NSETSEE----QLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh-hccccHH----HHHHHhc-cCCEEEEeCCC
Confidence 35789999999999999999888763321 3333322110 0111111 2333344 34588999997
Q ss_pred CCCcccHHH--HHhhccc-CCCCcEEEEeCCC
Q 039853 131 KDKYVDWTN--QRVLFVA-VASRRKVIVTTRN 159 (206)
Q Consensus 131 ~~~~~~~~~--l~~~l~~-~~~gs~IiiTTR~ 159 (206)
......|.. +...+.. ....-.+||||..
T Consensus 173 ~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 173 VQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 655555664 3233321 1223347777765
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.86 E-value=6.4e-05 Score=69.07 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=70.4
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------H----
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------I---- 90 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i---- 90 (206)
...++|.++. ++.|.+.+...... ..+.....+.++|++|+|||+||+.++....... +
T Consensus 457 ~~~ViGQ~~a--------i~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~ 528 (758)
T PRK11034 457 KMLVFGQDKA--------IEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH 528 (758)
T ss_pred cceEeCcHHH--------HHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccc
Confidence 4467898888 77777777532110 0122346789999999999999998876653221 1
Q ss_pred -HhhhCCCCCCCCCCCHHHHHHHHHhhhCC-ceEEEEEcCCCCCCcccHHHHHhhcccC----C-------CCcEEEEeC
Q 039853 91 -HNTISPETASASDDNLNSLQVKLKSGLSR-KKFQLASGDMWKDKYVDWTNQRVLFVAV----A-------SRRKVIVTT 157 (206)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~IiiTT 157 (206)
+..+.... +.....+ ....+.+.++. ...+++||+++..+.+.++.+...+..+ . .++-+|+||
T Consensus 529 ~~~~LiG~~--~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 529 TVSRLIGAP--PGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred cHHHHcCCC--CCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 11111111 0000000 00112233332 3469999999977777777777666533 1 344467777
Q ss_pred C
Q 039853 158 R 158 (206)
Q Consensus 158 R 158 (206)
.
T Consensus 606 N 606 (758)
T PRK11034 606 N 606 (758)
T ss_pred C
Confidence 5
No 143
>PRK08118 topology modulation protein; Reviewed
Probab=97.86 E-value=2.8e-05 Score=58.63 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=39.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-HHhhhC-CCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-IHNTIS-PETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-i~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
+.|.|+|++|+||||||+.+++...... -+..+. ... ....+.+...+.+.+.+.+..| |+|+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~--w~~~~~~~~~~~~~~~~~~~~w--VidG~~ 68 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN--WEGVPKEEQITVQNELVKEDEW--IIDGNY 68 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC--CcCCCHHHHHHHHHHHhcCCCE--EEeCCc
Confidence 3589999999999999999998865442 111111 111 1122333444555566666665 778865
No 144
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.85 E-value=0.00032 Score=58.78 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=87.0
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
..+.|.+|+.+ +..+..++..... .-++.+.|+|..|.|||.+.+.+.+......
T Consensus 4 l~~~v~~Re~q--------i~~L~~Llg~~~~----~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~ 71 (438)
T KOG2543|consen 4 LEPNVPCRESQ--------IRRLKSLLGNNSC----TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAI 71 (438)
T ss_pred cccCccchHHH--------HHHHHHHhCCCCc----ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHH
Confidence 45678899999 9999888765543 2456679999999999999999998874333
Q ss_pred ----HHhhhCCCCCCCCC-----CCHHHHHHHHHhh--h--CCceEEEEEcCCCCCCcccHHH-----HHhhcccCCCCc
Q 039853 90 ----IHNTISPETASASD-----DNLNSLQVKLKSG--L--SRKKFQLASGDMWKDKYVDWTN-----QRVLFVAVASRR 151 (206)
Q Consensus 90 ----i~~~~~~~~~~~~~-----~~~~~~~~~l~~~--l--~~kr~LlVlDdv~~~~~~~~~~-----l~~~l~~~~~gs 151 (206)
|+.++......... .........+.++ . +++.++|||||++ ...+.+. +...-.-.....
T Consensus 72 lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad--~lrD~~a~ll~~l~~L~el~~~~~ 149 (438)
T KOG2543|consen 72 LLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD--ALRDMDAILLQCLFRLYELLNEPT 149 (438)
T ss_pred HHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH--hhhccchHHHHHHHHHHHHhCCCc
Confidence 55555311100111 1222233333331 1 2468999999998 3332222 211111011122
Q ss_pred EEEEeCCChHHHHh---cCCCC--ceeCCCCCHHHHHHHHhhc
Q 039853 152 KVIVTTRNQGVTSI---MGTMP--AYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 152 ~IiiTTR~~~v~~~---~~~~~--~~~l~~L~~~~a~~Lf~~~ 189 (206)
.+|+++-...-... .+..+ ++..+.-+.++-..+|.+.
T Consensus 150 i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 150 IVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 34444433222111 23322 5677778889988888764
No 145
>PRK07261 topology modulation protein; Provisional
Probab=97.84 E-value=1.6e-05 Score=60.20 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=40.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHHH-HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVNS-IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
.|.|+|++|+||||||+.+........ -+..+.-.. .....+.+.....+...+.+.+ .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-NWQERDDDDMIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-ccccCCHHHHHHHHHHHHhCCC--EEEcCcc
Confidence 489999999999999998876543222 111111000 1123345667777777887766 5778765
No 146
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.83 E-value=4e-05 Score=63.84 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=49.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
.-+.++|.+|+|||+||.++++....+. ++..+.... ... . ...... .+.+. .-=||||||+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~--~~~-~-~~~~~~-~~~l~-~~DLLIIDDlG~ 257 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIR--FNN-D-KELEEV-YDLLI-NCDLLIIDDLGT 257 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHH--hcc-c-hhHHHH-HHHhc-cCCEEEEeccCC
Confidence 5699999999999999999887653222 333332111 000 0 011111 12222 235899999964
Q ss_pred CCcccHH--HHHhhcccC-CCCcEEEEeCCC
Q 039853 132 DKYVDWT--NQRVLFVAV-ASRRKVIVTTRN 159 (206)
Q Consensus 132 ~~~~~~~--~l~~~l~~~-~~gs~IiiTTR~ 159 (206)
.....|. .+...+... ..+..+||||..
T Consensus 258 e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 258 EKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3333333 333333322 234458888875
No 147
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.82 E-value=2e-05 Score=57.31 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=53.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQ 140 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l 140 (206)
.-|.|+|.+|+||+++|+.++....... ....+. ..... ..+.+.. +.--|+++|++..+.+....+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~-----~~~~~-----~~~l~~a--~~gtL~l~~i~~L~~~~Q~~L 89 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVID-----CASLP-----AELLEQA--KGGTLYLKNIDRLSPEAQRRL 89 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC-----HHCTC-----HHHHHHC--TTSEEEEECGCCS-HHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec-----hhhCc-----HHHHHHc--CCCEEEECChHHCCHHHHHHH
Confidence 4689999999999999998877653311 000000 00111 1122222 445677899998788888888
Q ss_pred HhhcccC-CCCcEEEEeCCC
Q 039853 141 RVLFVAV-ASRRKVIVTTRN 159 (206)
Q Consensus 141 ~~~l~~~-~~gs~IiiTTR~ 159 (206)
...+... ....++|.||..
T Consensus 90 ~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 90 LDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp HHHHHHCTTTTSEEEEEECC
T ss_pred HHHHHhcCCCCeEEEEEeCC
Confidence 8777644 567799998764
No 148
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.82 E-value=9e-05 Score=64.06 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|++|+||||||+.+.--+
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHccc
Confidence 478999999999999999885444
No 149
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.81 E-value=0.00032 Score=56.99 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=61.7
Q ss_pred CCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH----HHhhhCCCCCCCCCCCHHHHHHHHHhhhCC-----ceEEEEEc
Q 039853 57 NDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----IHNTISPETASASDDNLNSLQVKLKSGLSR-----KKFQLASG 127 (206)
Q Consensus 57 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----kr~LlVlD 127 (206)
++.++-+++.+|.+|.||.-.++.+++...... ++..+-.....+.....+.-+++++.++.+ +|-|+|+|
T Consensus 106 ~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFD 185 (344)
T KOG2170|consen 106 NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFD 185 (344)
T ss_pred CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEec
Confidence 346788999999999999999888877664333 333332222123445555566666666643 68999999
Q ss_pred CCCCCCcccHHHHHhhcc
Q 039853 128 DMWKDKYVDWTNQRVLFV 145 (206)
Q Consensus 128 dv~~~~~~~~~~l~~~l~ 145 (206)
+++...+.-++.+++.+.
T Consensus 186 E~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 186 EVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhhcCHhHHHHHhhhhc
Confidence 999777777788777665
No 150
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00045 Score=57.49 Aligned_cols=126 Identities=14% Similarity=0.030 Sum_probs=75.4
Q ss_pred CCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC-CceEEEEEcC
Q 039853 57 NDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLS-RKKFQLASGD 128 (206)
Q Consensus 57 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDd 128 (206)
+-..++=|.++|+||.|||-||++|+++-...+ +++..-.+. ..+...+.+.-+ ..++.|.+|.
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEG--------aRlVRelF~lArekaPsIIFiDE 252 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG--------ARLVRELFELAREKAPSIIFIDE 252 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccc--------hHHHHHHHHHHhhcCCeEEEEec
Confidence 345678899999999999999999999986555 555554444 334444444444 4589999998
Q ss_pred CCCC-----------Cccc---HHHHHhhcccC--CCCcEEEEeCCChHHHH--hcCCC---CceeCCCCCHHHHHHHHh
Q 039853 129 MWKD-----------KYVD---WTNQRVLFVAV--ASRRKVIVTTRNQGVTS--IMGTM---PAYELKKLVNDSCRLIFS 187 (206)
Q Consensus 129 v~~~-----------~~~~---~~~l~~~l~~~--~~gs~IiiTTR~~~v~~--~~~~~---~~~~l~~L~~~~a~~Lf~ 187 (206)
++.. +.+- .-+|+..+..+ ...-+||..|...++.. ..++. ..++++.-+.+--.++|+
T Consensus 253 IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 8742 1111 11233334322 34557888775544432 22332 456776444445556665
Q ss_pred hcc
Q 039853 188 QHP 190 (206)
Q Consensus 188 ~~a 190 (206)
-|+
T Consensus 333 IHt 335 (406)
T COG1222 333 IHT 335 (406)
T ss_pred HHh
Confidence 554
No 151
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.79 E-value=0.0001 Score=67.83 Aligned_cols=124 Identities=13% Similarity=0.062 Sum_probs=70.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 132 (206)
.++-+.++|++|.|||+||+++++.....+ ++.... ......+...+...-...+++|++|+++..
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v-------Gese~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV-------GESEKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc-------CcHHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 345689999999999999999988764433 222111 111222333333333456799999998632
Q ss_pred --------Ccc----cHHHHHhhcccC--CCCcEEEEeCCChHHHH--hcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 133 --------KYV----DWTNQRVLFVAV--ASRRKVIVTTRNQGVTS--IMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 133 --------~~~----~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~--~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+.. ...++...+... ..+-.||.||....... ..+ -...+.++..+.++-.++|+.+.
T Consensus 559 ~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 559 APARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred hccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 000 122233333321 23334555665544321 122 23567888888888888887653
No 152
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.79 E-value=1.5e-05 Score=56.40 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.78 E-value=0.00011 Score=68.54 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=70.3
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhH---HH---------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV---NS--------- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~--------- 89 (206)
...++|++.. ++.+.+.+...... ..+.....+.++|++|+|||+||+.+++..-. ..
T Consensus 508 ~~~v~GQ~~a--------i~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 508 HKRIIGQDEA--------VVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred cCcCcChHHH--------HHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcc
Confidence 3567888888 77777777532210 02223456789999999999999887654311 00
Q ss_pred ----HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCce-EEEEEcCCCCCCcccHHHHHhhcccC-----------CCCcEE
Q 039853 90 ----IHNTISPETASASDDNLNSLQVKLKSGLSRKK-FQLASGDMWKDKYVDWTNQRVLFVAV-----------ASRRKV 153 (206)
Q Consensus 90 ----i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~I 153 (206)
+..-++....-....... .+.+.++.++ .+++||+++..+++.++.|...+..+ ...+.+
T Consensus 580 ~~~~~~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 580 EKHTVSKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred ccccHHHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 111111110000001111 2334444443 58899999977888888887776543 245556
Q ss_pred EEeCCC
Q 039853 154 IVTTRN 159 (206)
Q Consensus 154 iiTTR~ 159 (206)
|+||..
T Consensus 656 I~Tsn~ 661 (821)
T CHL00095 656 IMTSNL 661 (821)
T ss_pred EEeCCc
Confidence 667654
No 154
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.77 E-value=8.2e-05 Score=68.53 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=66.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 132 (206)
..+-+.++|++|+|||+||+++++.....+ +.... .......+...+.........+|++|+++..
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l 283 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAI 283 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 346789999999999999999887653322 11111 1111223333444444556789999998632
Q ss_pred Cc-----------ccHHHHHhhcccC-CCCcEEEE-eCCChH-HHHhcC----CCCceeCCCCCHHHHHHHHhhc
Q 039853 133 KY-----------VDWTNQRVLFVAV-ASRRKVIV-TTRNQG-VTSIMG----TMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 133 ~~-----------~~~~~l~~~l~~~-~~gs~Iii-TTR~~~-v~~~~~----~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.. .....+...+... ..+..++| ||.... +..... -...+.+...+.++-.+++..+
T Consensus 284 ~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 284 APKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH 358 (733)
T ss_pred cccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH
Confidence 10 1122333333322 23334454 444322 211111 1235677777888877777754
No 155
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.76 E-value=7.8e-05 Score=66.12 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=34.1
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhc
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.++|+... ++.+...+.... ..-+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~--------i~~l~~al~~~~-------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEG--------IKALKAALCGPN-------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHH--------HHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHH
Confidence 58999988 788777664432 24578999999999999999875
No 156
>PRK06921 hypothetical protein; Provisional
Probab=97.74 E-value=6.3e-05 Score=60.92 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..-+.++|.+|+|||+||.++++...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 35799999999999999999887653
No 157
>PRK06696 uridine kinase; Validated
Probab=97.73 E-value=4.9e-05 Score=59.89 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=33.4
Q ss_pred HhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 40 KREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 40 ~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++|.+.+..... ..+.+|+|.|.+|+||||||+.+....
T Consensus 5 ~~~~~la~~~~~~~~----~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 5 QLIKELAEHILTLNL----TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHhCC----CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 347788888865322 367899999999999999999888765
No 158
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00092 Score=55.64 Aligned_cols=141 Identities=5% Similarity=-0.027 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH---H--H----------HHhhhCCCC--C---CC
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV---N--S----------IHNTISPET--A---SA 101 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~--~----------i~~~~~~~~--~---~~ 101 (206)
.+.|.+.+..+. -...+.++|+.|+||+++|..++...-- . . +...-.... . ..
T Consensus 11 ~~~l~~~~~~~r------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (325)
T PRK06871 11 YQQITQAFQQGL------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDN 84 (325)
T ss_pred HHHHHHHHHcCC------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccC
Confidence 556666665443 3468889999999999999877544310 0 0 111111000 0 01
Q ss_pred CCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHH-HhcCCCCceeC
Q 039853 102 SDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVT-SIMGTMPAYEL 174 (206)
Q Consensus 102 ~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~-~~~~~~~~~~l 174 (206)
.....++..+ +.+.+ .+++-.+|+|+++..+......++..+..-..++.+|++|.+ ..+. +.......+.+
T Consensus 85 ~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 85 KDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 2234444443 22332 355668889999988888888999888877777766666654 3444 32333357999
Q ss_pred CCCCHHHHHHHHhhc
Q 039853 175 KKLVNDSCRLIFSQH 189 (206)
Q Consensus 175 ~~L~~~~a~~Lf~~~ 189 (206)
.+++.++..+.+...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999888765
No 159
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.71 E-value=3.8e-05 Score=61.89 Aligned_cols=150 Identities=15% Similarity=0.063 Sum_probs=85.8
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..|+|+++. +++|.=++..... .+..+--+.++|+||.||||||.-+++...+.. ... ..+.
T Consensus 24 ~l~efiGQ~~v--------k~~L~ifI~AAk~--r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~-----k~t-sGp~ 87 (332)
T COG2255 24 TLDEFIGQEKV--------KEQLQIFIKAAKK--RGEALDHVLLFGPPGLGKTTLAHIIANELGVNL-----KIT-SGPA 87 (332)
T ss_pred cHHHhcChHHH--------HHHHHHHHHHHHh--cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe-----Eec-cccc
Confidence 45578999998 8887777754433 345677899999999999999999887764431 111 1123
Q ss_pred CCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhccc--------CCCCcE-----------EEEeCCChHHH
Q 039853 103 DDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVA--------VASRRK-----------VIVTTRNQGVT 163 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~-----------IiiTTR~~~v~ 163 (206)
.....++...+.. |+.. -.|.+|.++..+...-+-+.+.+.+ .+++++ |=-|||.-.+.
T Consensus 88 leK~gDlaaiLt~-Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt 165 (332)
T COG2255 88 LEKPGDLAAILTN-LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLT 165 (332)
T ss_pred ccChhhHHHHHhc-CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccccccc
Confidence 3334444444332 4333 3455688875544332222222211 122332 33478864433
Q ss_pred HhcCC--CCceeCCCCCHHHHHHHHhhcc
Q 039853 164 SIMGT--MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 164 ~~~~~--~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.-.+. .-+.+++--+.+|-.+...+.|
T Consensus 166 ~PLrdRFGi~~rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 166 NPLRDRFGIIQRLEFYTVEELEEIVKRSA 194 (332)
T ss_pred chhHHhcCCeeeeecCCHHHHHHHHHHHH
Confidence 22211 1246777778888888777765
No 160
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.70 E-value=2.6e-05 Score=65.26 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=39.2
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.++|.++. ++++++++...... .....+++.++|++|+||||||..+.+....
T Consensus 52 ~~~G~~~~--------i~~lv~~l~~~a~g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEA--------IERFVNYFKSAAQG-LEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHH--------HHHHHHHHHHHHhc-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46666666 99999988653320 1234588999999999999999998766643
No 161
>PRK06762 hypothetical protein; Provisional
Probab=97.69 E-value=0.0002 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999887654
No 162
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=5e-05 Score=67.97 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=77.5
Q ss_pred hHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCC-----CCCCCCCHHHHHHH
Q 039853 38 MKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPET-----ASASDDNLNSLQVK 112 (206)
Q Consensus 38 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~ 112 (206)
|++.+++|.+++--..- -++-+-++++.+|++|||||.+|+.++.....+++=-+++.-. .+....-....--+
T Consensus 416 m~dVKeRILEfiAV~kL-rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGk 494 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKL-RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGK 494 (906)
T ss_pred hHHHHHHHHHHHHHHhh-cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChH
Confidence 44449999998842211 0223568999999999999999998876654443111111111 00000011111123
Q ss_pred HHhhhC---CceEEEEEcCCCCC----------------CcccHHHHHhhcccC-CCCcEEEE-eCCC--hHH-HHhcCC
Q 039853 113 LKSGLS---RKKFQLASGDMWKD----------------KYVDWTNQRVLFVAV-ASRRKVIV-TTRN--QGV-TSIMGT 168 (206)
Q Consensus 113 l~~~l~---~kr~LlVlDdv~~~----------------~~~~~~~l~~~l~~~-~~gs~Iii-TTR~--~~v-~~~~~~ 168 (206)
+.++|+ -.+-|+.+|.++.. ++++-..|...+.+- --=|+|+. .|-| ..+ ......
T Consensus 495 iIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDR 574 (906)
T KOG2004|consen 495 IIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDR 574 (906)
T ss_pred HHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhh
Confidence 444443 34668888988742 112222222222211 11245544 3322 111 111223
Q ss_pred CCceeCCCCCHHHHHHHHhhcc
Q 039853 169 MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 169 ~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
..++++.+-..+|-.++-.++.
T Consensus 575 MEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 575 MEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheeeccCccHHHHHHHHHHhh
Confidence 4688999988888777766653
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.69 E-value=7.3e-05 Score=57.79 Aligned_cols=85 Identities=19% Similarity=0.107 Sum_probs=46.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCCCCCCCCCHHHHHHHHHhhh---------
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPETASASDDNLNSLQVKLKSGL--------- 117 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l--------- 117 (206)
+++.|.|.+|.|||+++..+........ +.+..+... ..+...+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a--------~Ti~~~l~~~~~~~~~~~~~ 90 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEA--------QTIHSFLYRIPNGDDEGRPE 90 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-E--------EEHHHHTTEECCEECCSSCC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcch--------hhHHHHHhcCCccccccccc
Confidence 6899999999999999888765543321 222211110 00111111110
Q ss_pred CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEe
Q 039853 118 SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVT 156 (206)
Q Consensus 118 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiT 156 (206)
..++-++|+|++...+...+..+....+. .|+++|+.
T Consensus 91 ~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp -TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred CCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 12335999999986666677777766653 46677765
No 164
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.67 E-value=9.8e-05 Score=62.00 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=44.0
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhh-----hCCceEEEEE
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSG-----LSRKKFQLAS 126 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVl 126 (206)
..+..+.|||++|.|||.+|++++....... +...... .....+.+.+... -+++.+.|++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG-------EsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG-------EPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC-------cHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 4678999999999999999999998876554 2222211 1222233333222 1457999999
Q ss_pred cCCCC
Q 039853 127 GDMWK 131 (206)
Q Consensus 127 Ddv~~ 131 (206)
|+++.
T Consensus 219 DEIDA 223 (413)
T PLN00020 219 NDLDA 223 (413)
T ss_pred ehhhh
Confidence 99873
No 165
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00083 Score=55.75 Aligned_cols=141 Identities=6% Similarity=-0.078 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH----HH----------HHhhhCCCC----CC--C
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV----NS----------IHNTISPET----AS--A 101 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~----------i~~~~~~~~----~~--~ 101 (206)
.+++.+.+..+. -...+.++|+.|+||+++|..++...-- .. +...-.... .. .
T Consensus 12 ~~~l~~~~~~~r------l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (319)
T PRK06090 12 WQNWKAGLDAGR------IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG 85 (319)
T ss_pred HHHHHHHHHcCC------cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC
Confidence 555666664443 3578999999999999999877543310 00 111111100 00 1
Q ss_pred CCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHH-HhcCCCCceeC
Q 039853 102 SDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVT-SIMGTMPAYEL 174 (206)
Q Consensus 102 ~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~-~~~~~~~~~~l 174 (206)
.....++..+ +.+.+ .+.+-.+|+|+++..+......++..+..-.+++..|++|.+ ..+. ++......+.+
T Consensus 86 ~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 86 KSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred CcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 2234444443 33333 234568889999988888889999888877777766666554 3443 33333357899
Q ss_pred CCCCHHHHHHHHhhc
Q 039853 175 KKLVNDSCRLIFSQH 189 (206)
Q Consensus 175 ~~L~~~~a~~Lf~~~ 189 (206)
.+++.++..+.+...
T Consensus 165 ~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 165 TPPSTAQAMQWLKGQ 179 (319)
T ss_pred CCCCHHHHHHHHHHc
Confidence 999999999888764
No 166
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00037 Score=59.33 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++.++|+.|+||||.+..++...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999887776544
No 167
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.66 E-value=9.2e-05 Score=63.76 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.+...|.... .+.++|++|+|||++|+.+++..
T Consensus 184 le~l~~~L~~~~---------~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 184 IETILKRLTIKK---------NIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred HHHHHHHHhcCC---------CEEEECCCCCCHHHHHHHHHHHh
Confidence 888888886543 58889999999999999887654
No 168
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=6.8e-05 Score=61.50 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=46.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceE-
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKF- 122 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~- 122 (206)
-++|.++|+||.|||+|+++++++..++. |-+++... .+-...+-+++.+.+.++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES-----gKlV~kmF~kI~ELv~d~~~l 251 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES-----GKLVAKMFQKIQELVEDRGNL 251 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh-----hhHHHHHHHHHHHHHhCCCcE
Confidence 58999999999999999999999886554 33333322 34455666777777777654
Q ss_pred -EEEEcCCC
Q 039853 123 -QLASGDMW 130 (206)
Q Consensus 123 -LlVlDdv~ 130 (206)
++.+|.|.
T Consensus 252 VfvLIDEVE 260 (423)
T KOG0744|consen 252 VFVLIDEVE 260 (423)
T ss_pred EEEEeHHHH
Confidence 44578876
No 169
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.64 E-value=0.00014 Score=52.72 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=43.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh-----hHHHHHhhhCCCCCCCCCCC--HH-----HHHHHHHhhhCCceEEEEEcCCC
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK-----TVNSIHNTISPETASASDDN--LN-----SLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~-----~~~~i~~~~~~~~~~~~~~~--~~-----~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
+|.++|++|+||||+|+.+.... ..+.+...+........... .. .+...+...+..... +|+|+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~vvd~~~ 79 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNS-VVVDNTN 79 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-E-EEEESS-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCC-ceeccCc
Confidence 58899999999999999987443 22225555544320011111 11 122334445544444 6667543
Q ss_pred CCCcccHHHHHhhcccCC
Q 039853 131 KDKYVDWTNQRVLFVAVA 148 (206)
Q Consensus 131 ~~~~~~~~~l~~~l~~~~ 148 (206)
. ....+..+...+...+
T Consensus 80 ~-~~~~r~~~~~~~~~~~ 96 (143)
T PF13671_consen 80 L-SREERARLRELARKHG 96 (143)
T ss_dssp --SHHHHHHHHHHHHHCT
T ss_pred C-CHHHHHHHHHHHHHcC
Confidence 1 4455555555554343
No 170
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.64 E-value=6.5e-05 Score=58.10 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++++.++|+.|+||||.+.+++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4799999999999999776665444
No 171
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0029 Score=53.08 Aligned_cols=71 Identities=3% Similarity=-0.065 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEe-CCChHHH-HhcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 119 RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVT-TRNQGVT-SIMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 119 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiT-TR~~~v~-~~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+++-.+|+|+++..+...+..++..+..-.+++.+|.+ ++...+. ++......+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 45568889999988899999999988877777755554 4544444 33333357999999999999888765
No 172
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00028 Score=59.99 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.++|+++|++|+||||++..++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45899999999999999988776543
No 173
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0011 Score=55.35 Aligned_cols=129 Identities=6% Similarity=-0.009 Sum_probs=76.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh-----HH---------H--HHhhhCCCC--CCC-----------CCCCHHHHH
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT-----VN---------S--IHNTISPET--ASA-----------SDDNLNSLQ 110 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~-----~~---------~--i~~~~~~~~--~~~-----------~~~~~~~~~ 110 (206)
-...+.++|+.|+|||++|..++...- .. + +...-.... ..+ .....++..
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 346899999999999999987755431 00 0 111000000 000 112344444
Q ss_pred HHHHhhhC-----CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH-HHHhc-CCCCceeCCCCCHHHHH
Q 039853 111 VKLKSGLS-----RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG-VTSIM-GTMPAYELKKLVNDSCR 183 (206)
Q Consensus 111 ~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~ 183 (206)
+ +.+.+. +++-.+|+|+++..+......+...+.....++.+|++|.+.. +...+ .....+.+.+++.++..
T Consensus 100 ~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 100 E-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred H-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 4 333332 3344556688887777777777777765555666777776643 33322 22357899999999998
Q ss_pred HHHhhc
Q 039853 184 LIFSQH 189 (206)
Q Consensus 184 ~Lf~~~ 189 (206)
+.+...
T Consensus 179 ~~L~~~ 184 (325)
T PRK08699 179 AYLRER 184 (325)
T ss_pred HHHHhc
Confidence 888664
No 174
>PHA02244 ATPase-like protein
Probab=97.61 E-value=0.00028 Score=59.43 Aligned_cols=103 Identities=9% Similarity=0.016 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----HHhhh---CCCCCCCCCCCHHHHHHHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-----IHNTI---SPETASASDDNLNSLQVKL 113 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----i~~~~---~~~~~~~~~~~~~~~~~~l 113 (206)
...+.+++.... -|.|+|++|+|||+||++++......+ +...+ +... ........ .+
T Consensus 109 ~~ri~r~l~~~~---------PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~-~~g~~~dg----pL 174 (383)
T PHA02244 109 TADIAKIVNANI---------PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFID-ANGKFHET----PF 174 (383)
T ss_pred HHHHHHHHhcCC---------CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccc-ccccccch----HH
Confidence 445555554433 378899999999999999887643222 11111 0000 00000001 12
Q ss_pred HhhhCCceEEEEEcCCCCCCcccHHHHHhhcc-----------cCCCCcEEEEeCCC
Q 039853 114 KSGLSRKKFQLASGDMWKDKYVDWTNQRVLFV-----------AVASRRKVIVTTRN 159 (206)
Q Consensus 114 ~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~-----------~~~~gs~IiiTTR~ 159 (206)
.+.+ .+-.+++||++...+.+....+...+. ...++.++|+|+..
T Consensus 175 l~A~-~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 175 YEAF-KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred HHHh-hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 2222 234689999998655555544444442 12356788888765
No 175
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00027 Score=62.80 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=74.2
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..++-|.++|+||.|||++|+++++.....+ ++......+ ...+.+-+.+.=.--.+++.||.++.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeS-------Er~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGES-------ERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCch-------HHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 4678999999999999999999999887665 333222222 23333333333334579999998873
Q ss_pred CCc-----------ccHHHHHhhcccCCCCcEEEE---eCCChHHHH-hcC---CCCceeCCCCCHHHHHHHHhhccC
Q 039853 132 DKY-----------VDWTNQRVLFVAVASRRKVIV---TTRNQGVTS-IMG---TMPAYELKKLVNDSCRLIFSQHPS 191 (206)
Q Consensus 132 ~~~-----------~~~~~l~~~l~~~~~gs~Iii---TTR~~~v~~-~~~---~~~~~~l~~L~~~~a~~Lf~~~af 191 (206)
... ..+.+++.-+........|+| |-|...+-. .++ -...+.++.=+.+--.++|+.++-
T Consensus 539 i~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 539 LAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred HhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 210 112334444433333334444 445444322 233 235677776677777888888763
No 176
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.00015 Score=63.45 Aligned_cols=158 Identities=9% Similarity=0.052 Sum_probs=98.4
Q ss_pred HHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-------
Q 039853 17 FKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN------- 88 (206)
Q Consensus 17 ~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------- 88 (206)
..+.-| .-.+++|.+.- ...|...+.... -.......|+-|+||||+|+.++....-.
T Consensus 7 ~rKyRP~~F~evvGQe~v--------~~~L~nal~~~r------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP 72 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHV--------VKTLSNALENGR------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP 72 (515)
T ss_pred HHHhCcccHHHhcccHHH--------HHHHHHHHHhCc------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc
Confidence 333333 44557899998 888888887654 34678899999999999998775433111
Q ss_pred ---H-HHhhhCCCCCCCC--------CCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 89 ---S-IHNTISPETASAS--------DDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 89 ---~-i~~~~~~~~~~~~--------~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
+ ..+.+.... ..+ ....++..+ +.+.. +++-=..|+|.|+..+...|..++..+..-...-
T Consensus 73 C~~C~~Ck~I~~g~-~~DviEiDaASn~gVddiR~-i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV 150 (515)
T COG2812 73 CGKCISCKEINEGS-LIDVIEIDAASNTGVDDIRE-IIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHV 150 (515)
T ss_pred chhhhhhHhhhcCC-cccchhhhhhhccChHHHHH-HHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCe
Confidence 1 222222221 011 112222222 33222 2344478899999999999999998887554444
Q ss_pred -EEEEeCCChHHHHh-cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 152 -KVIVTTRNQGVTSI-MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 152 -~IiiTTR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.|+.||-...+..- ....+.|.+..|+.++-...+..-+
T Consensus 151 ~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 151 KFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred EEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHH
Confidence 34556665555433 3344679999999998777776543
No 177
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00051 Score=57.05 Aligned_cols=141 Identities=9% Similarity=-0.001 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-------H----HHh-hhCCCC--C--CCC---
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------S----IHN-TISPET--A--SAS--- 102 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------~----i~~-~~~~~~--~--~~~--- 102 (206)
.+.+...+..+. -...+.++|+.|+||+++|..+++..--+ . .+. .-.... . .+.
T Consensus 13 ~~~l~~~~~~~r------l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~ 86 (319)
T PRK08769 13 YDQTVAALDAGR------LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTG 86 (319)
T ss_pred HHHHHHHHHcCC------cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccc
Confidence 556666664443 34689999999999999998775433100 0 111 100000 0 011
Q ss_pred -----CCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHHHh-cCCCC
Q 039853 103 -----DDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVTSI-MGTMP 170 (206)
Q Consensus 103 -----~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~-~~~~~ 170 (206)
....+++.+ +.+.+ .+++-++|+|+++..+...-..++..+..-..++.+|++|.+ ..+..- .....
T Consensus 87 ~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 87 DKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred ccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 112333332 22322 245678999999987888888888888777677766666654 444332 22335
Q ss_pred ceeCCCCCHHHHHHHHhhc
Q 039853 171 AYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 171 ~~~l~~L~~~~a~~Lf~~~ 189 (206)
.+.+.+++.+++.+.+...
T Consensus 166 ~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred EeeCCCcCHHHHHHHHHHc
Confidence 7899999999998888764
No 178
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00086 Score=56.11 Aligned_cols=141 Identities=9% Similarity=-0.006 Sum_probs=87.9
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH---H----------H--HHhhhCCCC----CCC-
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV---N----------S--IHNTISPET----ASA- 101 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~----------~--i~~~~~~~~----~~~- 101 (206)
-+++.+.+..+. -...+.++|+.|+||+++|..++...-- . + +........ ...
T Consensus 11 ~~~l~~~~~~~r------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (334)
T PRK07993 11 YEQLVGSYQAGR------GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG 84 (334)
T ss_pred HHHHHHHHHcCC------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc
Confidence 566677665543 3578999999999999999876544310 0 0 111111000 000
Q ss_pred -CCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHH-HhcCCCCcee
Q 039853 102 -SDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVT-SIMGTMPAYE 173 (206)
Q Consensus 102 -~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~-~~~~~~~~~~ 173 (206)
.....++..+ +.+.+ .+++-.+|+|+++..+......++..+.+-..++..|.+|.+ ..+. ++......+.
T Consensus 85 ~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~ 163 (334)
T PRK07993 85 KSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHY 163 (334)
T ss_pred cccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccccc
Confidence 1234444444 33333 356678999999988888888899888877667766666654 4444 3333335689
Q ss_pred CCCCCHHHHHHHHhhc
Q 039853 174 LKKLVNDSCRLIFSQH 189 (206)
Q Consensus 174 l~~L~~~~a~~Lf~~~ 189 (206)
+.+++.++..+.+...
T Consensus 164 ~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 164 LAPPPEQYALTWLSRE 179 (334)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999998888654
No 179
>PRK04296 thymidine kinase; Provisional
Probab=97.58 E-value=0.00025 Score=54.49 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=53.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH----HH--------------hhhCCCCCCCCCCCHHHHHHHHHhhhCCceEE
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS----IH--------------NTISPETASASDDNLNSLQVKLKSGLSRKKFQ 123 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----i~--------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 123 (206)
.++.|+|..|.||||+|..++.+..... ++ ..++.............+...+.+ ..++.-+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dv 81 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDC 81 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCE
Confidence 4788999999999999977766552222 11 111100000001123334444444 2334558
Q ss_pred EEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH
Q 039853 124 LASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG 161 (206)
Q Consensus 124 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~ 161 (206)
+|+|.+...+.++...+...+. ..|..|++|.++.+
T Consensus 82 viIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred EEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 9999997544443444444432 35778999988833
No 180
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.58 E-value=0.00034 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcChh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
+|.|.|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999877664
No 181
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00074 Score=61.44 Aligned_cols=146 Identities=11% Similarity=0.029 Sum_probs=88.1
Q ss_pred HHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHH
Q 039853 39 KKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSL 109 (206)
Q Consensus 39 ~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~ 109 (206)
+..+++++++|.++... .+..-++=+.++|+||.|||-||++++-...+-+ |++.+.... ....
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~-------asrv 392 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG-------ASRV 392 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc-------hHHH
Confidence 34488888888765421 2345678899999999999999999998887665 555554333 1222
Q ss_pred HHHHHhhhCCceEEEEEcCCCCCC---------------cccHHHHHhhcccCCCCcEEEE--eCCChHHHH--hcCC--
Q 039853 110 QVKLKSGLSRKKFQLASGDMWKDK---------------YVDWTNQRVLFVAVASRRKVIV--TTRNQGVTS--IMGT-- 168 (206)
Q Consensus 110 ~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~~--~~~~-- 168 (206)
.+.+...=...++++.+|.++... ...+.++..-+.....++.||+ +|+..++.. .+++
T Consensus 393 r~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGR 472 (774)
T KOG0731|consen 393 RDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGR 472 (774)
T ss_pred HHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCc
Confidence 222222323467899999887431 1124444444443333333333 565555432 2222
Q ss_pred -CCceeCCCCCHHHHHHHHhhccC
Q 039853 169 -MPAYELKKLVNDSCRLIFSQHPS 191 (206)
Q Consensus 169 -~~~~~l~~L~~~~a~~Lf~~~af 191 (206)
...+.++.-+.....++|..|+-
T Consensus 473 fdr~i~i~~p~~~~r~~i~~~h~~ 496 (774)
T KOG0731|consen 473 FDRQIQIDLPDVKGRASILKVHLR 496 (774)
T ss_pred cccceeccCCchhhhHHHHHHHhh
Confidence 24577777777788888887763
No 182
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.57 E-value=7e-05 Score=53.42 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=46.6
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH----HHhhhCCCCCCC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----IHNTISPETASA 101 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----i~~~~~~~~~~~ 101 (206)
.++|+.-. .+.+++.+..--...++.++-|++.+|.+|+|||.+++.+++..-.+. ++..+......+
T Consensus 26 ~l~GQhla--------~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP 97 (127)
T PF06309_consen 26 NLFGQHLA--------VEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFP 97 (127)
T ss_pred HccCcHHH--------HHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCC
Confidence 46777655 444444442211000346788999999999999998888777643322 222211111112
Q ss_pred CCCCHHHHHHHHHhhhC
Q 039853 102 SDDNLNSLQVKLKSGLS 118 (206)
Q Consensus 102 ~~~~~~~~~~~l~~~l~ 118 (206)
.......-.++|++++.
T Consensus 98 ~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 98 HNSNVDEYKEQLKSWIR 114 (127)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 33455555555655554
No 183
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.57 E-value=0.00013 Score=55.10 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=49.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH--HHhhhCCCCCCCCCCCHHHHHHHHHhhhC----------------CceEE
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS--IHNTISPETASASDDNLNSLQVKLKSGLS----------------RKKFQ 123 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~~l~----------------~kr~L 123 (206)
.-|.|+|..|.||+.+|+.+++...... ++ . -++...+.+.+...+.-.-+ -..=-
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi-~-----vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~Gt 96 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFI-S-----VNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGT 96 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EE-E-----EETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeE-E-----EehhhhhcchhhhhhhccccccccccccccCCceeeccceE
Confidence 4577999999999999999987643221 00 0 00111122222222221110 12336
Q ss_pred EEEcCCCCCCcccHHHHHhhcccC-----------CCCcEEEEeCCC
Q 039853 124 LASGDMWKDKYVDWTNQRVLFVAV-----------ASRRKVIVTTRN 159 (206)
Q Consensus 124 lVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiTTR~ 159 (206)
|+||+++..+......+...+... ....+||.||..
T Consensus 97 L~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 97 LFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred EeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 889999977777777776665432 124678887764
No 184
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.56 E-value=0.00069 Score=50.86 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=57.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH------------------------HHhhhCCCCCCCCCCCHHHH-HHHHHhh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS------------------------IHNTISPETASASDDNLNSL-QVKLKSG 116 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------------i~~~~~~~~~~~~~~~~~~~-~~~l~~~ 116 (206)
.+++|.|..|.|||||++.++....... +.+.+.... ....+..+. .-.+.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~--~~~LS~G~~~rv~lara 105 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPW--DDVLSGGEQQRLAFARL 105 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccC--CCCCCHHHHHHHHHHHH
Confidence 5899999999999999999877653322 111110000 111222222 2234556
Q ss_pred hCCceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHH
Q 039853 117 LSRKKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 117 l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~ 164 (206)
+-.++-++++|..-. .+......+...+... +..||++|.+.....
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 666778899997652 2444444454444433 356888888876554
No 185
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.56 E-value=0.00011 Score=57.81 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=60.4
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-.+++|.++. ++.+.-...+. ..+-+.|.|+||+||||-+..+++..--...-..+-.- ...+
T Consensus 25 ~l~dIVGNe~t--------v~rl~via~~g-------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL-NASd 88 (333)
T KOG0991|consen 25 VLQDIVGNEDT--------VERLSVIAKEG-------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL-NASD 88 (333)
T ss_pred HHHHhhCCHHH--------HHHHHHHHHcC-------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc-cCcc
Confidence 44567888888 77766655443 45789999999999999666555443211111111100 0124
Q ss_pred CCCHHHHHHHHHhhhC-------CceEEEEEcCCCCCCcccHHHHH
Q 039853 103 DDNLNSLQVKLKSGLS-------RKKFQLASGDMWKDKYVDWTNQR 141 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l~-------~kr~LlVlDdv~~~~~~~~~~l~ 141 (206)
....+-+..+++.+-+ ++.-.+|||.++.........++
T Consensus 89 eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlR 134 (333)
T KOG0991|consen 89 ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALR 134 (333)
T ss_pred ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHH
Confidence 4456666666654432 45568999999854444444444
No 186
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00052 Score=51.69 Aligned_cols=104 Identities=16% Similarity=0.052 Sum_probs=58.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------H--------HhhhCCCCCCCCC---------CCHHHHH-HHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------I--------HNTISPETASASD---------DNLNSLQ-VKLK 114 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i--------~~~~~~~~~~~~~---------~~~~~~~-~~l~ 114 (206)
.+++|.|..|.|||||.+.++.-..... + -..+.-....... .+..+.+ -.+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la 108 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA 108 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence 5899999999999999999876643221 1 0111100000000 1111111 1245
Q ss_pred hhhCCceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 115 SGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 115 ~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
..+-.++-++++|+... .+......+...+.....+..||++|.+......
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 56666788999998653 2344444444444333345678899988776654
No 187
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.54 E-value=0.00063 Score=51.55 Aligned_cols=103 Identities=16% Similarity=0.068 Sum_probs=58.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------H-------HhhhC--CCCCC----------CCCCCHHHHH-HH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------I-------HNTIS--PETAS----------ASDDNLNSLQ-VK 112 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i-------~~~~~--~~~~~----------~~~~~~~~~~-~~ 112 (206)
.+++|.|..|.|||||++.++....... + -..+. .+... ....+..+.+ -.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 5899999999999999999876543211 1 01110 00000 0111112222 23
Q ss_pred HHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHH
Q 039853 113 LKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~ 164 (206)
+.+.+-.++-++++|.... .+......+...+....++..||++|++.....
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 4556667788999998653 233344444444433334677899998877665
No 188
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.52 E-value=0.0004 Score=59.21 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=43.1
Q ss_pred eEEEEEcCCCCCC---cccHHHHH---hhcccCCCCcEEEEeCCChHHHH----hcC--CCCceeCCCCCHHHHHHHHhh
Q 039853 121 KFQLASGDMWKDK---YVDWTNQR---VLFVAVASRRKVIVTTRNQGVTS----IMG--TMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 121 r~LlVlDdv~~~~---~~~~~~l~---~~l~~~~~gs~IiiTTR~~~v~~----~~~--~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
+-++|+||+.... ...|+.+. ..+- ..+=.+||++|-+..... ... ..+.+.|...+++.|.++..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6789999987431 22233332 2222 233457888887744433 332 225688999999999999988
Q ss_pred cc
Q 039853 189 HP 190 (206)
Q Consensus 189 ~a 190 (206)
+.
T Consensus 228 ~L 229 (431)
T PF10443_consen 228 QL 229 (431)
T ss_pred Hh
Confidence 74
No 189
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00037 Score=60.14 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++.++|++|+||||++..++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999977665443
No 190
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.00018 Score=56.08 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCce
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPETASASDDNLNSLQVKLKSGLSRKK 121 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr 121 (206)
.++.+|+|.|.+|+||||+|+.++....... +.....-....+...+.+.+.+.|...+.+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999887775332 11111111123445566777777766666654
No 191
>PRK14527 adenylate kinase; Provisional
Probab=97.51 E-value=0.00036 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999887555
No 192
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.50 E-value=0.00045 Score=52.50 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=59.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------------------------HHhhhCCCC---CCCCCCCHHHHH-
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------------------------IHNTISPET---ASASDDNLNSLQ- 110 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------------------i~~~~~~~~---~~~~~~~~~~~~- 110 (206)
.+++|.|..|.|||||.+.++....... +++.++-.. ......+..+.+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 5899999999999999998876532111 122221111 001222222222
Q ss_pred HHHHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC-CC-CcEEEEeCCChHHHH
Q 039853 111 VKLKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV-AS-RRKVIVTTRNQGVTS 164 (206)
Q Consensus 111 ~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~IiiTTR~~~v~~ 164 (206)
-.+.+.+-..+-++++|+.-. .+......+...+... .. |..||++|.+.....
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 235566667788999998652 2444444554444432 22 667888988866543
No 193
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.50 E-value=0.00068 Score=53.35 Aligned_cols=56 Identities=7% Similarity=0.041 Sum_probs=35.2
Q ss_pred HHHhhhCCceEEEEEcCCC-CCCcccHHHHHhhcccC--CCCcEEEEeCCChHHHHhcC
Q 039853 112 KLKSGLSRKKFQLASGDMW-KDKYVDWTNQRVLFVAV--ASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~~ 167 (206)
.+.+.|-..+-+|+.|.-- +.+...-..+...+... ..|..||+.|.+..++..+.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3566666777889999632 22333333333333322 44778999999999998653
No 194
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.50 E-value=0.00011 Score=62.14 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=55.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
..++=+-|||..|.|||.|+-.+|+....+. ++..+...- ............+.+.+.++..||.||.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l--~~~~~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRL--HQLRGQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHH--HHHhCCCccHHHHHHHHHhcCCEEEEeeee
Confidence 4578899999999999999999998875522 333322111 000011112233445566777899999876
Q ss_pred CCCcccHHHHHhhcccC-CCCcEEEEeCCC
Q 039853 131 KDKYVDWTNQRVLFVAV-ASRRKVIVTTRN 159 (206)
Q Consensus 131 ~~~~~~~~~l~~~l~~~-~~gs~IiiTTR~ 159 (206)
-.+..+---+...|... ..|. +||+|-|
T Consensus 138 V~DiaDAmil~rLf~~l~~~gv-vlVaTSN 166 (362)
T PF03969_consen 138 VTDIADAMILKRLFEALFKRGV-VLVATSN 166 (362)
T ss_pred ccchhHHHHHHHHHHHHHHCCC-EEEecCC
Confidence 33444322222233221 4565 5555544
No 195
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.50 E-value=0.0013 Score=56.83 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..+.++.++|.+|+||||+|..++....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999988775543
No 196
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00027 Score=56.20 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
+-.++|.|.+|+|||+|...+......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 357899999999999999887765433
No 197
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.48 E-value=0.00034 Score=54.15 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=57.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCC--CCCCCCCHHHHHHHHHhhhCCceEEEEEc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPET--ASASDDNLNSLQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 127 (206)
.++.|+|+.|+||||++..+........ +...-.... ...-..+.....+.++..+....-.+++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 4789999999999999987665443211 110000000 00001122335556777777778899999
Q ss_pred CCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 128 DMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 128 dv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
.+. +.+.+....... ..|-.++.|+...++...
T Consensus 82 Eir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 82 EMR--DLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CCC--CHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 997 666555444332 245567888876655443
No 198
>PRK07667 uridine kinase; Provisional
Probab=97.47 E-value=0.00018 Score=55.37 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.|.+.+..... ...+|+|.|.+|+||||+|..+....
T Consensus 3 ~~~~~~~~~~~~~-----~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKE-----NRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCC-----CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666654433 45899999999999999999887654
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=97.47 E-value=0.0021 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
++.++.++|++|+||||++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999976666543
No 200
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0006 Score=53.50 Aligned_cols=50 Identities=12% Similarity=-0.071 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCCCCcccHHHH---Hhhccc-CCCCcEEEEeCCChHHHHhcCCCC
Q 039853 119 RKKFQLASGDMWKDKYVDWTNQ---RVLFVA-VASRRKVIVTTRNQGVTSIMGTMP 170 (206)
Q Consensus 119 ~kr~LlVlDdv~~~~~~~~~~l---~~~l~~-~~~gs~IiiTTR~~~v~~~~~~~~ 170 (206)
-++-|.|||..+ +--+.+.+ ...+.. ..+|+-+|+.|..+.++....+..
T Consensus 161 lePkl~ILDE~D--SGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 161 LEPKLAILDEPD--SGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred cCCCEEEecCCC--cCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 346799999888 44444433 333221 144667888899999888876543
No 201
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00021 Score=54.22 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
.|.|.|++|+||||+|+.+++.....+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 488999999999999999988764433
No 202
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.45 E-value=0.00052 Score=51.37 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=57.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---HHh--hh---------CCCCCCCCCCCHHHH-HHHHHhhhCCceEEEEE
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---IHN--TI---------SPETASASDDNLNSL-QVKLKSGLSRKKFQLAS 126 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~--~~---------~~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVl 126 (206)
.+++|.|..|.|||||.+.++....... .+. .+ .....-....+..+. .-.+.+.+-.++-++++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999876653322 000 00 000000000122222 22355566677889999
Q ss_pred cCCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChHHHH
Q 039853 127 GDMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 127 Ddv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~ 164 (206)
|+... .+......+...+... ..|..||++|++.....
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 98652 2444444454444322 34667888998876443
No 203
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.45 E-value=0.00039 Score=54.43 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.|.|.|++|+||||+|+.++..+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999988766543
No 204
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.44 E-value=0.00073 Score=61.40 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=68.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC-
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK- 133 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~- 133 (206)
+-+.++|++|.|||++|+.++......+ +..... ......+...+.......+++|++|+++...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~-------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV-------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh-------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhh
Confidence 4599999999999999999877654332 211111 1122333344444444568899999987431
Q ss_pred ---------cccHH----HHHhhcccC--CCCcEEEEeCCChHHHH--hcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 ---------YVDWT----NQRVLFVAV--ASRRKVIVTTRNQGVTS--IMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 ---------~~~~~----~l~~~l~~~--~~gs~IiiTTR~~~v~~--~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
...+. .+...+... ..+..+|.||...+... ..+ -...+.++..+.++-.++|..+.
T Consensus 259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred ccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 11122 222222211 23434444666554322 122 12457788778888888887664
No 205
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00067 Score=54.23 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=31.8
Q ss_pred HHhhhCCceEEEEEcCCCC----CCcccHHHHHhhcccCCCCcEEEEeCCChHHHH
Q 039853 113 LKSGLSRKKFQLASGDMWK----DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~ 164 (206)
+.+.|..+.=|++||.--. .+....-.+...+... |..||++|.+-....
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~ 203 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhH
Confidence 5677788889999996331 1233333344444433 888999999865443
No 206
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00073 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-+++|+|.+|+|||||++.+.--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 58999999999999999988643
No 207
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.42 E-value=0.0019 Score=53.47 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+..+..
T Consensus 5 a~~la~~I~~~~----~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 5 AKALAEIIKNPD----SDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHhccC----CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455666665543 1467899999999999999998887666544
No 208
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0012 Score=58.54 Aligned_cols=124 Identities=14% Similarity=0.030 Sum_probs=75.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 132 (206)
.+.-|.+||++|.|||-||+++++.....+ +++..-.++ ...+..-+.+.-..-+|.|.||.++..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGES-------ErAVR~vFqRAR~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGES-------ERAVRQVFQRARASAPCVIFFDEIDAL 616 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhH-------HHHHHHHHHHhhcCCCeEEEecchhhc
Confidence 357789999999999999999999987666 444433222 122223333333457999999998742
Q ss_pred -----Cccc------HHHHHhhccc--CCCCcEEEEeCCChHHH--HhcCC---CCceeCCCCCHHHHHHHHhhcc
Q 039853 133 -----KYVD------WTNQRVLFVA--VASRRKVIVTTRNQGVT--SIMGT---MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 133 -----~~~~------~~~l~~~l~~--~~~gs~IiiTTR~~~v~--~~~~~---~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+... ..+|+.-+.. ...|-.||-.|..+++- .+.++ .+.+-++.-+.+|-.++++...
T Consensus 617 ~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 617 VPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred CcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 1112 2334433332 24555566555444432 22233 2456677778888888888765
No 209
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.41 E-value=0.00065 Score=49.79 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=58.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---HHh---hhCCCCCCCCCCCHHHH-HHHHHhhhCCceEEEEEcCCCC-CC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---IHN---TISPETASASDDNLNSL-QVKLKSGLSRKKFQLASGDMWK-DK 133 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~---~~~~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~-~~ 133 (206)
.+++|.|..|.|||||++.+........ .+. .+.-. .+ .+..+. .-.+.+.+-.++-++++|+... .+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~---~~-lS~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYF---EQ-LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEE---cc-CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 5899999999999999999877654322 000 00000 01 222222 2235666667788899998652 34
Q ss_pred cccHHHHHhhcccCCCCcEEEEeCCChHHHH
Q 039853 134 YVDWTNQRVLFVAVASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 134 ~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~ 164 (206)
......+...+... +..||++|.+.....
T Consensus 103 ~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 103 LESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 45555555555433 246888888766554
No 210
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.41 E-value=0.00068 Score=51.16 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=57.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCCCCCC--C-------CCHHHHH-HHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPETASAS--D-------DNLNSLQ-VKLK 114 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~~~~~--~-------~~~~~~~-~~l~ 114 (206)
.+++|.|..|.|||||.+.++....... +...+.-...... . .+..+.+ -.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 5899999999999999998876543211 1111110000000 0 1112212 2245
Q ss_pred hhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChHHHH
Q 039853 115 SGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 115 ~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~ 164 (206)
..+-.++-++++|+... .+......+...+... ..|..||++|.+.....
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 55666777899998653 2444444444444322 24667888888877654
No 211
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.41 E-value=0.00028 Score=61.42 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=84.3
Q ss_pred hHHHHHHhhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH---
Q 039853 12 SIEMLFKKLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN--- 88 (206)
Q Consensus 12 ~i~~~~~~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--- 88 (206)
.+.++...+ ...++||++. ++.+...++.+.. |.|.|++|+|||+||+.+.......
T Consensus 10 ~i~~l~~~l---~~~i~gre~v--------I~lll~aalag~h---------VLL~GpPGTGKT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 10 RISRLSSAL---EKGLYERSHA--------IRLCLLAALSGES---------VFLLGPPGIAKSLIARRLKFAFQNARAF 69 (498)
T ss_pred HHHHHHHHH---hhhccCcHHH--------HHHHHHHHccCCC---------EEEECCCChhHHHHHHHHHHHhcccCcc
Confidence 344444443 4568999999 9999998887765 9999999999999999887643211
Q ss_pred -HHHhhhCCCCCCCCCCC---HHHH--HHHHHhhhCC---ceEEEEEcCCCCCCcccHHHHHhhcccCC--CC-------
Q 039853 89 -SIHNTISPETASASDDN---LNSL--QVKLKSGLSR---KKFQLASGDMWKDKYVDWTNQRVLFVAVA--SR------- 150 (206)
Q Consensus 89 -~i~~~~~~~~~~~~~~~---~~~~--~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~~--~g------- 150 (206)
++-..+. .. .+... .... ...+.....+ ..-++++|+++..+......+...+.... .|
T Consensus 70 ~~~~~~ft-tp--~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 70 EYLMTRFS-TP--EEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred eeeeeeec-Cc--HHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 0000000 00 00000 0000 0011111112 12289999999777777777776663211 11
Q ss_pred cEE-EEeCCChHHH------Hhc-CCCCceeCCCCCHH-HHHHHHhhc
Q 039853 151 RKV-IVTTRNQGVT------SIM-GTMPAYELKKLVND-SCRLIFSQH 189 (206)
Q Consensus 151 s~I-iiTTR~~~v~------~~~-~~~~~~~l~~L~~~-~a~~Lf~~~ 189 (206)
.++ +++| +.--. ..+ +-.-.+.+++++.+ +-.+++...
T Consensus 147 ~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 234 4455 42111 111 11125789999854 447787664
No 212
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.40 E-value=0.00013 Score=64.52 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=35.8
Q ss_pred eeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 27 LFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 27 ~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++|.++. +++|++.|...... ....-+++.++|++|+|||+||+.+..-.
T Consensus 78 ~yGlee~--------ieriv~~l~~Aa~g-l~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEA--------IEQIVSYFRHAAQG-LEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHH--------HHHHHHHHHHHHHh-cCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 5666666 99999988321110 11244799999999999999999886533
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00062 Score=56.18 Aligned_cols=134 Identities=13% Similarity=0.010 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCC---CCCCC
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPET---ASASD 103 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~---~~~~~ 103 (206)
...+..+...... ....+.++|++|+||||+|..+++..--.. +...-.... ...+.
T Consensus 10 ~~~l~~~~~~~~~-----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~ 84 (325)
T COG0470 10 VKRLLVQALESGR-----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDL 84 (325)
T ss_pred HHHHHHHHHhcCC-----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccccc
Confidence 7777777764432 334799999999999999988776552110 000000000 00111
Q ss_pred CC---HHHHHHHHHhhhC-----CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHHHhcC-CCCcee
Q 039853 104 DN---LNSLQVKLKSGLS-----RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVTSIMG-TMPAYE 173 (206)
Q Consensus 104 ~~---~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~~-~~~~~~ 173 (206)
.. ..+..+.+.+... ++.-++++|+++..+.+.-..+...+......+.+|++|.+ ..+..-+. ....++
T Consensus 85 ~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~ 164 (325)
T COG0470 85 RKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIR 164 (325)
T ss_pred CCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeee
Confidence 11 1222233333221 45678999999977777777788777777777778877763 33333222 223566
Q ss_pred CCCCCHH
Q 039853 174 LKKLVND 180 (206)
Q Consensus 174 l~~L~~~ 180 (206)
+.+.+..
T Consensus 165 f~~~~~~ 171 (325)
T COG0470 165 FKPPSRL 171 (325)
T ss_pred cCCchHH
Confidence 6664333
No 214
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.40 E-value=0.00026 Score=56.78 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
-..++|.|++|+|||||++.+|+....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 468999999999999999999987644
No 215
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.39 E-value=0.00012 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHhcCh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~ 85 (206)
|.|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998884
No 216
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00088 Score=58.95 Aligned_cols=129 Identities=10% Similarity=-0.048 Sum_probs=75.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC---
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD--- 132 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--- 132 (206)
..++.+.++|++|.|||.||+++++..+..+ ....+.... -......+.+.+....+...+.|.+|.++..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~---vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~ 350 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW---VGESEKNIRELFEKARKLAPSIIFIDEIDSLASG 350 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc---cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhcc
Confidence 4566999999999999999999999554443 111111111 1112233444444454578899999998742
Q ss_pred ---Cc-----ccHHHHHhhcccCCCCcE--EEEeCCChHHHH-h-cC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 133 ---KY-----VDWTNQRVLFVAVASRRK--VIVTTRNQGVTS-I-MG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 133 ---~~-----~~~~~l~~~l~~~~~gs~--IiiTTR~~~v~~-~-~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+. ....+++..+......+. ||-+|....... . .+ -...+.+++-+.++..+.|+.+.
T Consensus 351 r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 351 RGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHL 423 (494)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHh
Confidence 11 223344444432333333 344554433322 1 12 23478888889999999999875
No 217
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00097 Score=58.27 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCC----CCHHHHHHHHHh
Q 039853 42 EEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASD----DNLNSLQVKLKS 115 (206)
Q Consensus 42 ~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~ 115 (206)
+++|+++|..+..- -+..=++-|.++|+||.|||-||++++-...+.++. .-+.+. +. .....+.+.+..
T Consensus 316 LeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~-~sGSEF---dEm~VGvGArRVRdLF~a 391 (752)
T KOG0734|consen 316 LEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY-ASGSEF---DEMFVGVGARRVRDLFAA 391 (752)
T ss_pred HHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe-ccccch---hhhhhcccHHHHHHHHHH
Confidence 89999999765431 123346789999999999999999999888765411 001111 11 112222232333
Q ss_pred hhCCceEEEEEcCCCC
Q 039853 116 GLSRKKFQLASGDMWK 131 (206)
Q Consensus 116 ~l~~kr~LlVlDdv~~ 131 (206)
.=..-+|.|.+|.++.
T Consensus 392 Ak~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 392 AKARAPCIIFIDEIDA 407 (752)
T ss_pred HHhcCCeEEEEechhh
Confidence 3345689999998874
No 218
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.36 E-value=0.0015 Score=54.60 Aligned_cols=119 Identities=11% Similarity=0.057 Sum_probs=63.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH--HHhhhCCCCCCCCCCCHHHHHHHHHh---------------hh-CCceEE
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS--IHNTISPETASASDDNLNSLQVKLKS---------------GL-SRKKFQ 123 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~---------------~l-~~kr~L 123 (206)
.-|.|+|.+|+||+++|+.++....... ++ .+. +.......+...+.. .+ ....-.
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv-~vn-----c~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGt 96 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLV-KLN-----CAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGT 96 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeE-EEe-----CCCCChHHHHHHHhccccccccCcccccCCchhhCCCCE
Confidence 4589999999999999998875442111 00 000 111111111111110 01 112456
Q ss_pred EEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEEEeCCChH------------HHHhcCCCCceeCCCCC--
Q 039853 124 LASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVIVTTRNQG------------VTSIMGTMPAYELKKLV-- 178 (206)
Q Consensus 124 lVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTTR~~~------------v~~~~~~~~~~~l~~L~-- 178 (206)
|+||+++..+......+...+.... ...+||.||...- +...+ ....+.+++|.
T Consensus 97 L~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl-~~~~i~lPpLReR 175 (329)
T TIGR02974 97 LFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRL-AFDVITLPPLRER 175 (329)
T ss_pred EEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHh-cchhcCCCchhhh
Confidence 8999999777777777777664321 2347777774321 11111 12357888887
Q ss_pred HHHHHHHHh
Q 039853 179 NDSCRLIFS 187 (206)
Q Consensus 179 ~~~a~~Lf~ 187 (206)
.+|.-.|+.
T Consensus 176 ~eDI~~L~~ 184 (329)
T TIGR02974 176 QEDIMLLAE 184 (329)
T ss_pred hhhHHHHHH
Confidence 455554443
No 219
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0012 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...+++++|+.|+||||++..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998876644
No 220
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.35 E-value=0.00061 Score=60.91 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=60.7
Q ss_pred eEEEEEcCCCchHHH-HHHHHhcChhHHH-------------------HHhhh----CCCC----CCCCC----------
Q 039853 62 SVTPVIGMGGSGNTT-LALPVYNDKTVNS-------------------IHNTI----SPET----ASASD---------- 103 (206)
Q Consensus 62 ~vi~I~G~gGiGKTt-LA~~v~~~~~~~~-------------------i~~~~----~~~~----~~~~~---------- 103 (206)
.+|.|+|..|+|||| ||+.+|.+-..+. ....+ +... ...+.
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~Ikym 451 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYM 451 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEe
Confidence 699999999999998 8898887653332 12222 1110 00000
Q ss_pred CCHHHHHHHHHhhhCCceEEEEEcCCCCC--CcccHHHHHhhcccCCCCcEEEEeCCC---hHHHHhcCCCCceeCCC
Q 039853 104 DNLNSLQVKLKSGLSRKKFQLASGDMWKD--KYVDWTNQRVLFVAVASRRKVIVTTRN---QGVTSIMGTMPAYELKK 176 (206)
Q Consensus 104 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~IiiTTR~---~~v~~~~~~~~~~~l~~ 176 (206)
.+---+.+.|.+..-+|=..+|+|.+++- +.+.+--+..........-++||||-. ...+..++..+.+.+++
T Consensus 452 TDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 452 TDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred ccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeecC
Confidence 11222333344444445568999999842 222222222222223456799999765 44455555444444443
No 221
>PRK08233 hypothetical protein; Provisional
Probab=97.35 E-value=0.00017 Score=54.58 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+|+|.|.+|+||||||..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999988665
No 222
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.35 E-value=0.00054 Score=60.93 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=64.6
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--HHhhhCCCCCCCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--IHNTISPETASAS 102 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i~~~~~~~~~~~~ 102 (206)
..++|+... +.++.+.+..-.. ...-|.|+|.+|+|||++|+.+++...... ++ .+ ++.
T Consensus 196 ~~liG~s~~--------~~~~~~~~~~~a~-----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv-~i-----~c~ 256 (534)
T TIGR01817 196 DGIIGKSPA--------MRQVVDQARVVAR-----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFV-KV-----NCA 256 (534)
T ss_pred CceEECCHH--------HHHHHHHHHHHhC-----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeE-Ee-----ecC
Confidence 367898887 6665555543221 224578999999999999999886542111 00 00 011
Q ss_pred CCCHHHHHHHHHh---------------hh-CCceEEEEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEEE
Q 039853 103 DDNLNSLQVKLKS---------------GL-SRKKFQLASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVIV 155 (206)
Q Consensus 103 ~~~~~~~~~~l~~---------------~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~Iii 155 (206)
......+...+.. .+ ....-.|+||+++..+...+..+...+.... ...+||.
T Consensus 257 ~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 336 (534)
T TIGR01817 257 ALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVA 336 (534)
T ss_pred CCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEE
Confidence 1111111111100 01 1123468899999777777777777665331 1247777
Q ss_pred eCCC
Q 039853 156 TTRN 159 (206)
Q Consensus 156 TTR~ 159 (206)
||..
T Consensus 337 ~s~~ 340 (534)
T TIGR01817 337 ATNR 340 (534)
T ss_pred eCCC
Confidence 7643
No 223
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.35 E-value=0.00095 Score=61.04 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
..|+|+|..|+|||||++.+..-+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57999999999999999988665544
No 224
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.35 E-value=0.00097 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 225
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.33 E-value=0.00073 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.-+++.|.|.+|+|||+||.++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~ 47 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVY 47 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 568999999999999999988743
No 226
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.33 E-value=0.00025 Score=55.20 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+...+|+|+|++|+||||||+.++...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 227
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00061 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcChh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988753
No 228
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0013 Score=52.72 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=82.5
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------HHhhhCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--------IHNTISP 96 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------i~~~~~~ 96 (206)
.+++|+++. +.-..-|++.|..++. -....++-|..+|++|.|||.+|+++++..++-. |-..++.
T Consensus 121 ddViGqEeA-----K~kcrli~~yLenPe~-Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 121 DDVIGQEEA-----KRKCRLIMEYLENPER-FGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred hhhhchHHH-----HHHHHHHHHHhhChHH-hcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 356777665 1113445566644431 1234578999999999999999999999987655 2222221
Q ss_pred CCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC------------cccHHHHHhhccc--CCCCcEEEEeCCChHH
Q 039853 97 ETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK------------YVDWTNQRVLFVA--VASRRKVIVTTRNQGV 162 (206)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~IiiTTR~~~v 162 (206)
.. ....+...+.-+.-+|.+.+|.++..- .+..+.++.-+.. .+-|-.-|-.|.+...
T Consensus 195 ga--------r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 195 GA--------RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HH--------HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 11 222222222223468999999886421 1112223333331 2345444444555444
Q ss_pred HH-hcCCC--CceeCCCCCHHHHHHHHhhcc
Q 039853 163 TS-IMGTM--PAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 163 ~~-~~~~~--~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.. .+++. .-++..--++++-.+++..++
T Consensus 267 LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 267 LDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred cCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 32 22221 234555457888888888776
No 229
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.32 E-value=0.0002 Score=55.66 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999988765
No 230
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0019 Score=59.24 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++++|+.|+||||++.+++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999887776544
No 231
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.31 E-value=0.00082 Score=52.25 Aligned_cols=59 Identities=14% Similarity=-0.126 Sum_probs=34.6
Q ss_pred hhhCCceEEEEEcCCCC-CCcccHHHHHhhccc-CCCCcEEEEeCCChHHHHhcCCCCceeCCC
Q 039853 115 SGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVA-VASRRKVIVTTRNQGVTSIMGTMPAYELKK 176 (206)
Q Consensus 115 ~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~ 176 (206)
..+-.++-++++|+... .+......+...+.. ...|..||++|.+...... .+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 33444567999997652 244444455544442 2346678999988665443 45566654
No 232
>PRK13695 putative NTPase; Provisional
Probab=97.31 E-value=0.00047 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.|.|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999876553
No 233
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.0026 Score=50.36 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCC-CcccHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKD-KYVDWT 138 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~-~~~~~~ 138 (206)
--|.+||-.|.|||+|++++.+....+. ++-+.... .+..+... +.+.|+ .+||.|..||+..+ +.+.+.
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~~~g-lrLVEV~k--~dl~~Lp~----l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK 158 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYADEG-LRLVEVDK--EDLATLPD----LVELLRARPEKFILFCDDLSFEEGDDAYK 158 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHHHhcC-CeEEEEcH--HHHhhHHH----HHHHHhcCCceEEEEecCCCCCCCchHHH
Confidence 5689999999999999999887764432 00000000 11122222 344443 57999999999754 456677
Q ss_pred HHHhhcccC---CCCcEEEEeCCC
Q 039853 139 NQRVLFVAV---ASRRKVIVTTRN 159 (206)
Q Consensus 139 ~l~~~l~~~---~~gs~IiiTTR~ 159 (206)
.++..+..+ .+...++..|.|
T Consensus 159 ~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 159 ALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHHHhcCCcccCCCeEEEEEecC
Confidence 777777633 344445554444
No 234
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.30 E-value=0.00075 Score=61.80 Aligned_cols=118 Identities=10% Similarity=0.038 Sum_probs=63.9
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------H
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--------------I 90 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------i 90 (206)
..++|+... +..+.+.+..-.. ...-|.|+|.+|+|||++|+.++....... .
T Consensus 376 ~~liG~S~~--------~~~~~~~~~~~a~-----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 376 GEIIGRSEA--------MYSVLKQVEMVAQ-----SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred cceeecCHH--------HHHHHHHHHHHhC-----CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 358898877 5555444432211 224699999999999999999986542111 0
Q ss_pred -HhhhCCCCCCCCCCC-HHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEEEeC
Q 039853 91 -HNTISPETASASDDN-LNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVIVTT 157 (206)
Q Consensus 91 -~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTT 157 (206)
-..+..... ..... .......+ -....=.|+||+++..+......+...+.... .+.+||.||
T Consensus 443 ~~~~lfg~~~-~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t 518 (686)
T PRK15429 443 LESDLFGHER-GAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 518 (686)
T ss_pred hhhhhcCccc-ccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeC
Confidence 001110000 00000 00000111 11123468999999777777777777664321 245788877
Q ss_pred CC
Q 039853 158 RN 159 (206)
Q Consensus 158 R~ 159 (206)
..
T Consensus 519 ~~ 520 (686)
T PRK15429 519 NR 520 (686)
T ss_pred CC
Confidence 54
No 235
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.30 E-value=0.00066 Score=50.65 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=31.6
Q ss_pred HhhhCC-ceEEEEEcCCCC---CCcccHHHHHhhcccCCCCcEEEEeCCChH
Q 039853 114 KSGLSR-KKFQLASGDMWK---DKYVDWTNQRVLFVAVASRRKVIVTTRNQG 161 (206)
Q Consensus 114 ~~~l~~-kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~ 161 (206)
++.+.. .--|+|||.+-. ...-..+.+...+.....+..||+|.|+..
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 334433 445999998752 234455566666665667778999999854
No 236
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.30 E-value=0.003 Score=54.41 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=22.0
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+.+|.++|++|+||||+|..++...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999887776433
No 237
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.30 E-value=0.00021 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|.+|+||||||+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999886544
No 238
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.29 E-value=0.0005 Score=58.34 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
-....|+|++|+||||||+.+|+.....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 3567899999999999999999877543
No 239
>PRK14528 adenylate kinase; Provisional
Probab=97.29 E-value=0.00092 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.+.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999887654
No 240
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.29 E-value=0.0006 Score=61.39 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred CCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCC--------ceEEEEEcC
Q 039853 57 NDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSR--------KKFQLASGD 128 (206)
Q Consensus 57 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--------kr~LlVlDd 128 (206)
..+.-++..++|++|+||||||.-++.+....- +.- ...+......+.+++...+.. ++.-||+|.
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsV----vEI--NASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDE 395 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSV----VEI--NASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDE 395 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceE----EEe--cccccccHHHHHHHHHHHHhhccccccCCCcceEEEec
Confidence 345678999999999999999998776642210 000 112444555566666555543 455589999
Q ss_pred CC
Q 039853 129 MW 130 (206)
Q Consensus 129 v~ 130 (206)
++
T Consensus 396 ID 397 (877)
T KOG1969|consen 396 ID 397 (877)
T ss_pred cc
Confidence 87
No 241
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.29 E-value=0.0017 Score=57.50 Aligned_cols=61 Identities=7% Similarity=0.016 Sum_probs=40.1
Q ss_pred HHhhhCCceEEEEEcCCCCC-CcccHHHHHhhcccCCCCcEEEEeCCChHHHHhcCCCCceeCCC
Q 039853 113 LKSGLSRKKFQLASGDMWKD-KYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMGTMPAYELKK 176 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~ 176 (206)
+...+-.+.-+||||.--|+ +.+....+...|... +|+ ||+.|.++....... .+++.+.+
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhc-ceEEEEcC
Confidence 44555567789999987653 555555565555533 465 899999988877654 34555553
No 242
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.28 E-value=0.0031 Score=51.22 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH------------------HHhhhCCCC---CC
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------------IHNTISPET---AS 100 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------i~~~~~~~~---~~ 100 (206)
.+.+...|.... ...-++|+|.+|.|||||.+.++....... +...+..-. ..
T Consensus 98 ~~~~l~~l~~~~------~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 98 ADKLLPYLVRNN------RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHHhCC------CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccc
Confidence 455555555332 346899999999999999999876653221 222221111 00
Q ss_pred --CCCCCHHHHHHHHHhhhC-CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 101 --ASDDNLNSLQVKLKSGLS-RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 101 --~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
.+..+...-...+...+. ..+-++++|.+- ..+.+..+...+. .|..+|+||.+..+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 011111111112233332 467899999987 6666666665553 47789999998766544
No 243
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.0021 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+++++|+.|+||||++..++...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34799999999999999887776544
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0025 Score=50.35 Aligned_cols=50 Identities=8% Similarity=-0.061 Sum_probs=30.4
Q ss_pred hhCCceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 116 GLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 116 ~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
.+-.++-+++||+.-. .+......+...+....++..||++|++......
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3344566899998652 2444445555555433346678888888766554
No 245
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.28 E-value=0.00094 Score=50.45 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
...+|.+.|++|+||||+|+.++....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887654
No 246
>PTZ00301 uridine kinase; Provisional
Probab=97.27 E-value=0.0002 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.+|+|.|.+|+||||||+.+.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHH
Confidence 35799999999999999998776543
No 247
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.004 Score=52.84 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.++++++|+.|+||||++..++...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999987776543
No 248
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.26 E-value=0.00068 Score=51.56 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=57.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---HHhh--hCCCCCCCCCCCHHHH-HHHHHhhhCCceEEEEEcCCCC-CCc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNT--ISPETASASDDNLNSL-QVKLKSGLSRKKFQLASGDMWK-DKY 134 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~--~~~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~-~~~ 134 (206)
.+++|.|..|+|||||.+.+..-..... .+.. +.-...... .+..+. .-.+.+.+-.++-++++|..-. .+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 5899999999999999999877654332 1110 110000011 222222 2235566667788999998652 234
Q ss_pred ccHHHHHhhcccC-CC-CcEEEEeCCChHHHH
Q 039853 135 VDWTNQRVLFVAV-AS-RRKVIVTTRNQGVTS 164 (206)
Q Consensus 135 ~~~~~l~~~l~~~-~~-gs~IiiTTR~~~v~~ 164 (206)
.....+...+... .. +..||++|.+.....
T Consensus 105 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 4444444444322 12 256888888866554
No 249
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.24 E-value=0.0018 Score=52.98 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+++++|++|+||||++..++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999988776554
No 250
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.0021 Score=48.46 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=58.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------H-------HhhhC---CCCCCCCC--------CCHHHHHH-HH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------I-------HNTIS---PETASASD--------DNLNSLQV-KL 113 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i-------~~~~~---~~~~~~~~--------~~~~~~~~-~l 113 (206)
.+++|.|..|.|||||.+.++....... + -..+. ........ .+..+.+. .+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 5899999999999999999877543211 0 00010 00000001 11122222 35
Q ss_pred HhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChHHHHh
Q 039853 114 KSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 114 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~~ 165 (206)
...+-.++-++++|+... .+......+...+... ..|..||++|.+......
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 566667888999998652 2333444444444322 236779999988776553
No 251
>PF14516 AAA_35: AAA-like domain
Probab=97.23 E-value=0.0043 Score=51.89 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=38.0
Q ss_pred hhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 20 LAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 20 l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
++...+-.+.|... -+.+.+.|.... ..+.|.|+..+|||+|...+.+..+.
T Consensus 6 ~~~~~~~Yi~R~~~--------e~~~~~~i~~~G--------~~~~I~apRq~GKTSll~~l~~~l~~ 57 (331)
T PF14516_consen 6 LPLDSPFYIERPPA--------EQECYQEIVQPG--------SYIRIKAPRQMGKTSLLLRLLERLQQ 57 (331)
T ss_pred CCCCCCcccCchHH--------HHHHHHHHhcCC--------CEEEEECcccCCHHHHHHHHHHHHHH
Confidence 44555666788855 566666665544 48999999999999999888666543
No 252
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.23 E-value=0.00045 Score=59.23 Aligned_cols=26 Identities=35% Similarity=0.267 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
...+.++|++|+|||+||+.++....
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC
Confidence 35799999999999999999986654
No 253
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.23 E-value=0.00037 Score=55.20 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
..|.|.|++|+||||+|+.++..+...+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~ 34 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKH 34 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 3489999999999999999987764443
No 254
>PRK04132 replication factor C small subunit; Provisional
Probab=97.23 E-value=0.0022 Score=59.52 Aligned_cols=120 Identities=10% Similarity=0.013 Sum_probs=73.3
Q ss_pred CCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhC-----C-ceEEEEEcCCCCCCcccHHHHHh
Q 039853 69 MGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLS-----R-KKFQLASGDMWKDKYVDWTNQRV 142 (206)
Q Consensus 69 ~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~-kr~LlVlDdv~~~~~~~~~~l~~ 142 (206)
+.++||||+|.+++++.-.+..-..+-.- ...+....+.+.+.+.+... + +.-++|+|+++..+.+..+.|+.
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lEl-NASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk 652 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLEL-NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRR 652 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEE-eCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHH
Confidence 77899999999988775111000000000 01122345556555544332 1 34699999999888888888888
Q ss_pred hcccCCCCcEEEEeCCC-hHHHHhc-CCCCceeCCCCCHHHHHHHHhhc
Q 039853 143 LFVAVASRRKVIVTTRN-QGVTSIM-GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 143 ~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.+......+++|.+|.+ ..+.... .....+++.+++.++..+.+...
T Consensus 653 ~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 653 TMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred HhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHH
Confidence 88765556666555544 4333222 22357999999998888777654
No 255
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.22 E-value=0.0023 Score=50.61 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 118 SRKKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 118 ~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
-.++-++++|+... .+......+...+.....|..||++|.+......
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 34567999998653 2444444455444433346779999988777653
No 256
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.22 E-value=0.0024 Score=52.60 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|.|||||.+.+....
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887553
No 257
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.21 E-value=0.00025 Score=53.91 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999887443
No 258
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.20 E-value=0.0032 Score=49.28 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=54.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCCCCCC-CCCHHHHHHHHHhh--hCCc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPETASAS-DDNLNSLQVKLKSG--LSRK 120 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~~~~~-~~~~~~~~~~l~~~--l~~k 120 (206)
.+++.|+|+.|.|||||.+.+........ +...+.......+ ......-.+++... +..+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 48999999999999999887753221111 1122221110000 01111112222222 2367
Q ss_pred eEEEEEcCCCCC-CcccH----HHHHhhcccC-CCCcEEEEeCCChHHHHhc
Q 039853 121 KFQLASGDMWKD-KYVDW----TNQRVLFVAV-ASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 121 r~LlVlDdv~~~-~~~~~----~~l~~~l~~~-~~gs~IiiTTR~~~v~~~~ 166 (206)
+.|+++|..-.- +..+. ..+...+... ..+..+|++|.+.......
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 899999987631 22111 1222333322 2345799999998877654
No 259
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.20 E-value=0.00052 Score=54.29 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
....+++|.|++|+|||||++.+....+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999998876543
No 260
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.20 E-value=0.0017 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|.|||||++.++.-.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999886543
No 261
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.20 E-value=0.00042 Score=51.07 Aligned_cols=76 Identities=12% Similarity=-0.010 Sum_probs=40.9
Q ss_pred EEcCCCchHHHHHHHHhcChhHHH-----HHhhhCCCC-----------CCCCCCCHHHHHHHHHhhhCC--ceEEEEEc
Q 039853 66 VIGMGGSGNTTLALPVYNDKTVNS-----IHNTISPET-----------ASASDDNLNSLQVKLKSGLSR--KKFQLASG 127 (206)
Q Consensus 66 I~G~gGiGKTtLA~~v~~~~~~~~-----i~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~--kr~LlVlD 127 (206)
|.|+||+||||+|+.++.++...+ +++...... ........+.+.+.+...+.. ...-+|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 689999999999999988764322 222111000 001222334444555555543 24567899
Q ss_pred CCCCCCcccHHHHHh
Q 039853 128 DMWKDKYVDWTNQRV 142 (206)
Q Consensus 128 dv~~~~~~~~~~l~~ 142 (206)
++-. +..+...+..
T Consensus 81 GfPr-t~~Qa~~l~~ 94 (151)
T PF00406_consen 81 GFPR-TLEQAEALEE 94 (151)
T ss_dssp SB-S-SHHHHHHHHH
T ss_pred eccc-cHHHHHHHHH
Confidence 9864 4445555544
No 262
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.20 E-value=0.003 Score=49.14 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=55.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCCCCCCCCCHHHH---HHHHHhhh--C
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPETASASDDNLNSL---QVKLKSGL--S 118 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~~~~~~~~~~~~---~~~l~~~l--~ 118 (206)
..++.|.|+.|.||||+.+.++.-.-... +...+.... ......... ..++...+ .
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d--~~~~~~S~fs~e~~~~~~il~~~ 106 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDD--SMERNLSTFASEMSETAYILDYA 106 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCcc--ccchhhhHHHHHHHHHHHHHHhc
Confidence 37899999999999999887753331111 111111111 011111111 11222222 3
Q ss_pred CceEEEEEcCCCCC-Cccc----HHHHHhhcccCCCCcEEEEeCCChHHHHhcC
Q 039853 119 RKKFQLASGDMWKD-KYVD----WTNQRVLFVAVASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 119 ~kr~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~ 167 (206)
.++-|+++|....- +..+ ...+...+.. .|+.+|++|.+..++....
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 56889999987421 2222 1122333332 3778999999988887654
No 263
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.0021 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
+++|.|+.|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999988754
No 264
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.19 E-value=0.0016 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||.+.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988754
No 265
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.19 E-value=0.0015 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||++.++...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999987543
No 266
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.18 E-value=0.0022 Score=58.77 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|..|+|||||++.+..-+
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999886544
No 267
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.0017 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||++.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988654
No 268
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.17 E-value=0.0006 Score=55.34 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=19.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
+.|.|+|.||+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999998877543
No 269
>PRK06547 hypothetical protein; Provisional
Probab=97.17 E-value=0.00066 Score=51.39 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|+|.|.+|+||||+|+.+....
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999987654
No 270
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.17 E-value=0.0043 Score=55.80 Aligned_cols=119 Identities=17% Similarity=0.100 Sum_probs=71.5
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.+..+-+|+.+ ..+|.+++..--. ....-+.+-|.|.+|.|||..+..|.+......
T Consensus 394 vp~sLpcRe~E--------~~~I~~f~~~~i~--~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI 463 (767)
T KOG1514|consen 394 VPESLPCRENE--------FSEIEDFLRSFIS--DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI 463 (767)
T ss_pred ccccccchhHH--------HHHHHHHHHhhcC--CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE
Confidence 34456799999 8888887754322 112345899999999999999999988553211
Q ss_pred --------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC-----CceEEEEEcCCCCCCcccHHHHHhhccc-CCC
Q 039853 90 --------------IHNTISPETASASDDNLNSLQVKLKSGLS-----RKKFQLASGDMWKDKYVDWTNQRVLFVA-VAS 149 (206)
Q Consensus 90 --------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~ 149 (206)
|+.++.... .......+.+..++. .+.+++++|+++..=....+-+...|.+ ..+
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~ 538 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLK 538 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCC
Confidence 666665444 222333344444443 3568888898763211112333344432 367
Q ss_pred CcEEEEe
Q 039853 150 RRKVIVT 156 (206)
Q Consensus 150 gs~IiiT 156 (206)
+|+++|.
T Consensus 539 ~sKLvvi 545 (767)
T KOG1514|consen 539 NSKLVVI 545 (767)
T ss_pred CCceEEE
Confidence 7887764
No 271
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.17 E-value=0.0017 Score=50.29 Aligned_cols=103 Identities=11% Similarity=0.128 Sum_probs=53.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH----------------HHhhhCCCCC-CCCCCCHHHHHHHHHhhhCC----c
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS----------------IHNTISPETA-SASDDNLNSLQVKLKSGLSR----K 120 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------i~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~----k 120 (206)
++++|.|+.|.|||||.+.+........ ++..+..... .........-..++.+.+.. +
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 7999999999999999988864332111 0000000000 00000001111334444432 7
Q ss_pred eEEEEEcCCCC-CCcccHHHH----HhhcccCCCCcEEEEeCCChHHHHhc
Q 039853 121 KFQLASGDMWK-DKYVDWTNQ----RVLFVAVASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 121 r~LlVlDdv~~-~~~~~~~~l----~~~l~~~~~gs~IiiTTR~~~v~~~~ 166 (206)
+-++++|..-. .+......+ ...+. ..|..+|++|.+...+...
T Consensus 106 p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 106 PVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred CeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 88999998642 122222222 22222 3467899999997777654
No 272
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.16 E-value=0.0006 Score=56.90 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=33.1
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...++|+... +..+.+.+..-.. ...-|.|+|.+|+||+++|+.++..
T Consensus 5 ~~~liG~S~~--------~~~~~~~i~~~a~-----~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANS--------FLEVLEQVSRLAP-----LDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHH--------HHHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3457888777 5555555533221 2246889999999999999988754
No 273
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0013 Score=56.30 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...++.++|++|+||||++..++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999998776543
No 274
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.16 E-value=0.0023 Score=57.55 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|..|.|||||++.+..-+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 579999999999999999886554
No 275
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.16 E-value=0.0053 Score=50.93 Aligned_cols=167 Identities=21% Similarity=0.140 Sum_probs=89.8
Q ss_pred HHH-HHHhhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH-HH-
Q 039853 13 IEM-LFKKLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV-NS- 89 (206)
Q Consensus 13 i~~-~~~~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~- 89 (206)
|.+ +...+-.+-..++|-+++ ...+-.|+....- .++...+.|+|+.|.|||+|......+.+. ..
T Consensus 11 iqr~l~~rl~~~~~~l~g~~~~--------~~~l~~~lkqt~~---~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~ 79 (408)
T KOG2228|consen 11 IQRILRERLCGPHINLFGVQDE--------QKHLSELLKQTIL---HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN 79 (408)
T ss_pred HHHHHHHHhcCCCcceeehHHH--------HHHHHHHHHHHHH---hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe
Confidence 444 334444467778999998 7777777754321 123467899999999999987666555211 11
Q ss_pred -------------------HHhhhCCCC--CCCCCCCHHHHHHHHHhhhC------CceEEEEEcCCCCCCcccHHH-HH
Q 039853 90 -------------------IHNTISPET--ASASDDNLNSLQVKLKSGLS------RKKFQLASGDMWKDKYVDWTN-QR 141 (206)
Q Consensus 90 -------------------i~~~~~~~~--~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~-l~ 141 (206)
|..++..+. ......+..+....+...|+ +-++.+|+|.++-.-...-.. +.
T Consensus 80 ~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllY 159 (408)
T KOG2228|consen 80 FLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLY 159 (408)
T ss_pred EEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHH
Confidence 222221111 00111122222223333332 236889998876221111111 11
Q ss_pred hhc----ccCCCCcEEEEeCCChHHH-------HhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 142 VLF----VAVASRRKVIVTTRNQGVT-------SIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 142 ~~l----~~~~~gs~IiiTTR~~~v~-------~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
..| ....|=+-|-+|||..... .-+....++-++.++-++...++++..
T Consensus 160 nlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 160 NLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 112 1234556677899974432 223333366777888899999988764
No 276
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.16 E-value=0.0021 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..++|+|..|.|||||++.+..-..
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 5789999999999999998876553
No 277
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.0024 Score=54.94 Aligned_cols=153 Identities=14% Similarity=0.029 Sum_probs=89.1
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.+..+.||+.+ ++.+..|+...-. .+....+-|.|-+|.|||.+...++.+.....
T Consensus 148 ~p~~l~gRe~e--------~~~v~~F~~~hle---~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl 216 (529)
T KOG2227|consen 148 PPGTLKGRELE--------MDIVREFFSLHLE---LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL 216 (529)
T ss_pred CCCCccchHHH--------HHHHHHHHHhhhh---cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc
Confidence 45667899999 9999998865432 24567899999999999999988877663322
Q ss_pred ---------HHhhh-CCCCCCCCCCCHHHHHHHHHhhhCC--ceEEEEEcCCCCCCcccHHHHHhh--cccCCCCcEEEE
Q 039853 90 ---------IHNTI-SPETASASDDNLNSLQVKLKSGLSR--KKFQLASGDMWKDKYVDWTNQRVL--FVAVASRRKVIV 155 (206)
Q Consensus 90 ---------i~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~--l~~~~~gs~Iii 155 (206)
|...+ .... ... ...+.++.+...+.. .-+|+|+|.++......-..+... |+ .-+++++|+
T Consensus 217 ~~~~aiF~kI~~~~~q~~~--s~~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-~lp~sr~iL 292 (529)
T KOG2227|consen 217 TEASAIFKKIFSSLLQDLV--SPG-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-KLPNSRIIL 292 (529)
T ss_pred cchHHHHHHHHHHHHHHhc--CCc-hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-cCCcceeee
Confidence 33333 1111 111 114455556655544 368999998874311111111111 22 234555444
Q ss_pred e--CCC-----hHHHHhcC----CCCceeCCCCCHHHHHHHHhhcc
Q 039853 156 T--TRN-----QGVTSIMG----TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 156 T--TR~-----~~v~~~~~----~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. ... +.+..... ....+...|-+.++..++|..+.
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 2 111 11111111 12467888899999999998764
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00026 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
.-|.|.|+||+||||+++.+.+..+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 568999999999999999998777655
No 279
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.13 E-value=0.0033 Score=48.73 Aligned_cols=52 Identities=6% Similarity=-0.060 Sum_probs=31.3
Q ss_pred HhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 114 KSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 114 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
.+.+-.++-++++|+... .+......+...+.....|..+|++|.+......
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 344445567899998653 2444444555555433346778888888766543
No 280
>PRK02496 adk adenylate kinase; Provisional
Probab=97.13 E-value=0.0016 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.|.|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999887654
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=97.13 E-value=0.0026 Score=55.02 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..+.+|.++|.+|+||||+|..++....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999997766655443
No 282
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.12 E-value=0.0033 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|.|||||.+.++.-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999886543
No 283
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.002 Score=48.88 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=56.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------HH----------hhhC---CCCCCCCC----------CCHHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------IH----------NTIS---PETASASD----------DNLNSL 109 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i~----------~~~~---~~~~~~~~----------~~~~~~ 109 (206)
.+++|.|..|.|||||++.++....... +. ..+. ........ .+..+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~ 106 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQ 106 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHH
Confidence 5899999999999999999875543221 10 0010 00000000 111122
Q ss_pred H-HHHHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC-C-CCcEEEEeCCChHHHH
Q 039853 110 Q-VKLKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV-A-SRRKVIVTTRNQGVTS 164 (206)
Q Consensus 110 ~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~-~gs~IiiTTR~~~v~~ 164 (206)
+ -.+...+-.++-++++|.... .+......+...+... . .|..||++|.+.....
T Consensus 107 qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 107 QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2 224556667788999997642 2444444444444322 1 2567888888866654
No 284
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0021 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|+|||||++.++...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 285
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.12 E-value=0.00031 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
++.|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999986654
No 286
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.12 E-value=0.0022 Score=49.67 Aligned_cols=104 Identities=10% Similarity=0.084 Sum_probs=54.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-------------HHhhh----CCCCC-CCCCCCHHHHHHHHHhhh--CCce
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-------------IHNTI----SPETA-SASDDNLNSLQVKLKSGL--SRKK 121 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------i~~~~----~~~~~-~~~~~~~~~~~~~l~~~l--~~kr 121 (206)
.+++|.|..|.|||||.+.+....-... +..++ ..... .........-..++...+ ...+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 6999999999999999988873321111 11111 11110 000111111222233333 2478
Q ss_pred EEEEEcCCCC-CCcccHHHH----HhhcccCCCCcEEEEeCCChHHHHhcC
Q 039853 122 FQLASGDMWK-DKYVDWTNQ----RVLFVAVASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 122 ~LlVlDdv~~-~~~~~~~~l----~~~l~~~~~gs~IiiTTR~~~v~~~~~ 167 (206)
-++++|..-. .+...-..+ ...+. ..++.+|++|.+..+...+.
T Consensus 110 ~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 110 SLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLPE 158 (202)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHhh
Confidence 8999998752 122111112 22222 23667999999988877654
No 287
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.12 E-value=0.0024 Score=49.38 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=56.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh--hHHH-----------------HHh-hhC---CCCC-------------CCCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK--TVNS-----------------IHN-TIS---PETA-------------SASDDN 105 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~--~~~~-----------------i~~-~~~---~~~~-------------~~~~~~ 105 (206)
.+++|.|..|.|||||.+.+.... .... ... .+. .... .....+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS 106 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFS 106 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccCC
Confidence 599999999999999999887752 1111 000 010 0000 001111
Q ss_pred HHHHH-HHHHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChHHHH
Q 039853 106 LNSLQ-VKLKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 106 ~~~~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~ 164 (206)
..+.+ -.+...+-.++-++++|+.-. .+......+...+... ..|..||++|.+.....
T Consensus 107 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 12211 124455556778999998652 2444444444444322 23667888998877665
No 288
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.11 E-value=0.0019 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.+++|+|..|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.11 E-value=0.0022 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999886554
No 290
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.10 E-value=0.0027 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|+.|+|||||++.+..-+
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999886544
No 291
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.0032 Score=49.79 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=31.7
Q ss_pred HhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 114 KSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 114 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
...|-.++-+++||.... .+......+...+.....|..||++|++......
T Consensus 149 a~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 149 ARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 344445677999998653 2444444455544433336678888888776654
No 292
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.10 E-value=0.0063 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+.++.++|.+|+||||.|..++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999987665544
No 293
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.10 E-value=0.0024 Score=57.13 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|..|.|||||++.+....
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999885544
No 294
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.09 E-value=0.0044 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|..|.|||||++.++..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 69999999999999999988754
No 295
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.002 Score=47.69 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=58.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------HHh----hhCCCCCCCCCCCHHH-HHHHHHhhhCCceEEEEEc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------IHN----TISPETASASDDNLNS-LQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i~~----~~~~~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlD 127 (206)
.+++|.|..|.|||||.+.+........ +.. .......-..+.+..+ ..-.+...+....-++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5899999999999999999887654322 000 0000000000011122 2223555666678899999
Q ss_pred CCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChHHHHhc
Q 039853 128 DMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 128 dv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~~~ 166 (206)
.... .+......+...+... ..+..++++|.+.......
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 8763 2344444444443322 2256788898887766543
No 296
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.09 E-value=0.0023 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|+|||||++.++.-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988654
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0022 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+-.++.++|+.|+||||++.++....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999987776543
No 298
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.09 E-value=0.00091 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHhcChh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999876553
No 299
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.08 E-value=0.0034 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|.|||||.+.++.-.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887543
No 300
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.08 E-value=0.004 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||++.++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988654
No 301
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.07 E-value=0.0017 Score=49.60 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=55.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCC-CCCCCCCHHHHHHHHHhhhCC--ceE
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPET-ASASDDNLNSLQVKLKSGLSR--KKF 122 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~--kr~ 122 (206)
++.|.|..|.||||+.+.+........ ++..+.... ..........-..++...+.. ++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 467999999999999988873331111 111122111 000111222222345555544 789
Q ss_pred EEEEcCCCC-CCcccHHH----HHhhcccCCCCcEEEEeCCChHHHHhc
Q 039853 123 QLASGDMWK-DKYVDWTN----QRVLFVAVASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 123 LlVlDdv~~-~~~~~~~~----l~~~l~~~~~gs~IiiTTR~~~v~~~~ 166 (206)
|+++|..-. .+...-.. +...+.. ..++.+|++|.+..+...+
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 999998752 12221112 2222221 2367899999998877654
No 302
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.07 E-value=0.00042 Score=51.84 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
...|.|+|++|+||||+|+.++.....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999877643
No 303
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.06 E-value=0.0034 Score=47.72 Aligned_cols=104 Identities=21% Similarity=0.122 Sum_probs=57.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh---hH---------HH--------HHhhhCCCC----CCCCCCCHHHHH-HHHHh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK---TV---------NS--------IHNTISPET----ASASDDNLNSLQ-VKLKS 115 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~---~~---------~~--------i~~~~~~~~----~~~~~~~~~~~~-~~l~~ 115 (206)
-.+++|.|+.|+|||||.+.+..+. .. .. ++..++-.. ......+..+.+ -.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 3689999999999999998875211 00 00 333333211 001122222222 23445
Q ss_pred hhCCc--eEEEEEcCCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChHHHH
Q 039853 116 GLSRK--KFQLASGDMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 116 ~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~ 164 (206)
.+-.+ .-++++|..-. .+......+...+... ..|..||++|++.....
T Consensus 101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 55556 77888997652 2444444444444332 24667999999877654
No 304
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.003 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|+|||||++.++.-.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987654
No 305
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.06 E-value=0.0028 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.+....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887543
No 306
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0023 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|..|+|||||++.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999886443
No 307
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0021 Score=57.93 Aligned_cols=148 Identities=10% Similarity=-0.034 Sum_probs=83.5
Q ss_pred hhhHHhHHHHHHHHhCCCCC------CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCC
Q 039853 36 ADMKKREEGTVELILKDDSE------CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASAS 102 (206)
Q Consensus 36 ~~~~~~~~~l~~~l~~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~ 102 (206)
-+|.+.++.+.+.+..+... ++-.-..-|.++|++|.|||.||.+++.....++ ++...-..+
T Consensus 670 gg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaS---- 745 (952)
T KOG0735|consen 670 GGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGAS---- 745 (952)
T ss_pred ccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhccc----
Confidence 34555577777777655421 1223445789999999999999999988876665 554443332
Q ss_pred CCCHHHHHHHHHhhhCCceEEEEEcCCCCC-------Ccc----cHHHHHhhccc--CCCCcEEEE-eCCChHHHH-hcC
Q 039853 103 DDNLNSLQVKLKSGLSRKKFQLASGDMWKD-------KYV----DWTNQRVLFVA--VASRRKVIV-TTRNQGVTS-IMG 167 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~~~----~~~~l~~~l~~--~~~gs~Iii-TTR~~~v~~-~~~ 167 (206)
.+.....+.+.-.-++|.|.||.++.. +.. -..+++..+.. +-.|-.|+- |||..-+-. ..+
T Consensus 746 ---Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 746 ---EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred ---HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 233444444555568999999998742 111 23345555442 234544444 667533221 122
Q ss_pred CC---CceeCCCCCHHHHHHHHhhcc
Q 039853 168 TM---PAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 168 ~~---~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+. +.+--+.-++.+-.++|...+
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHh
Confidence 21 222223335566666665443
No 308
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.0051 Score=47.70 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=59.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCC--------CCCCCCCHH---HH-HHHHHhhh--CCceEEEEEc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPET--------ASASDDNLN---SL-QVKLKSGL--SRKKFQLASG 127 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~--------~~~~~~~~~---~~-~~~l~~~l--~~kr~LlVlD 127 (206)
+.|.+.|.||+||||+|+.++...+.+. .+.+.... .+......+ +. .+...+.+ .=+.+++|.|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i-~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~VIvD 80 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI-WRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYLVIVD 80 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh-hhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceEEEEe
Confidence 4688999999999999999887665442 11111100 000111001 00 01111111 1248999999
Q ss_pred CCCCCCcccHHHHHhhcc----cCCCCcEEEEeCCChHHHHhcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 128 DMWKDKYVDWTNQRVLFV----AVASRRKVIVTTRNQGVTSIMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 128 dv~~~~~~~~~~l~~~l~----~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
|.. -. ..++..|. .....-.||.+--..++..-.+ .-+=+|.+++--.+|..++
T Consensus 81 dtN--Yy---ksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN---~ergepip~Evl~qly~Rf 138 (261)
T COG4088 81 DTN--YY---KSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN---RERGEPIPEEVLRQLYDRF 138 (261)
T ss_pred ccc--HH---HHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh---ccCCCCCCHHHHHHHHHhh
Confidence 876 22 22322221 1223334665544455443332 2334566777777777664
No 309
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0026 Score=56.07 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+++|+|.+|+||||++..++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999998776643
No 310
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.04 E-value=0.0026 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|+|||||++.++...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999887654
No 311
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.0049 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|.|||||.+.+....
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999886543
No 312
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.03 E-value=0.003 Score=56.71 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
-..++|+|..|.|||||++.+...+.
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999998876553
No 313
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.03 E-value=0.0031 Score=50.63 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
-.+++|.|+.|+|||||.+.++.-.+.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 469999999999999999999875543
No 314
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.02 E-value=0.0033 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|..|+|||||++.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988644
No 315
>PRK14531 adenylate kinase; Provisional
Probab=97.02 E-value=0.002 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.|.|.|++|+||||+++.+...+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999988776543
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.02 E-value=0.0018 Score=52.62 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.+++.++|++|+||||++..++...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999887766444
No 317
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.02 E-value=0.0062 Score=47.82 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||++.++.-
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988654
No 318
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.02 E-value=0.0029 Score=48.14 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=56.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---------H---------HhhhCCCCCC------CCCCCHHH-H-------
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---------I---------HNTISPETAS------ASDDNLNS-L------- 109 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------i---------~~~~~~~~~~------~~~~~~~~-~------- 109 (206)
.+++|.|..|.|||||.+.++.-..... + -..+.-.... .......+ +
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS 106 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLS 106 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhcC
Confidence 5899999999999999999876543221 0 0011100000 00011111 1
Q ss_pred ----HH-HHHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChHHHH
Q 039853 110 ----QV-KLKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 110 ----~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~ 164 (206)
+. .+...+-.++-++++|+.-. .+......+...+... ..|..||++|++.....
T Consensus 107 ~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELL 168 (182)
T ss_pred HHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 11 24455556778999998652 2444444444444322 23667899998865443
No 319
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.01 E-value=0.0045 Score=55.66 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|..|.|||||++.+..-+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3688999999999999999886654
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.01 E-value=0.0036 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
-..++|+|..|.|||||++.+..-+.
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999998865543
No 321
>PRK14526 adenylate kinase; Provisional
Probab=97.01 E-value=0.0013 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHhcCh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.|+|++|+||||+|+.+....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999887554
No 322
>PRK04040 adenylate kinase; Provisional
Probab=97.01 E-value=0.00052 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999887765
No 323
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.00 E-value=0.0034 Score=48.79 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||++.++..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988654
No 324
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.00 E-value=0.00097 Score=56.75 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
..++|+|++|.|||||++.+++....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc
Confidence 56899999999999999999887543
No 325
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.00 E-value=0.0035 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|+|||||++.++.-.
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887653
No 326
>PRK10908 cell division protein FtsE; Provisional
Probab=97.00 E-value=0.0034 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|+|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988644
No 327
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.00 E-value=0.00053 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHhcCh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~ 85 (206)
|.|+|++|+|||+||+.++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999887655
No 328
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.99 E-value=0.00073 Score=52.61 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+.++|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 6789999999999999999988654
No 329
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.99 E-value=0.0053 Score=48.37 Aligned_cols=105 Identities=8% Similarity=0.008 Sum_probs=54.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCCCCCCCCCH---HHHHHHHHhhh--
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPETASASDDNL---NSLQVKLKSGL-- 117 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~~~~~~~~~---~~~~~~l~~~l-- 117 (206)
..+++.|.|+.|.||||+.+.+..-.-... ++..++... ....+. ..-..++...+
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d--~~~~~lS~~~~e~~~~a~il~~ 106 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASD--SQLKGVSTFMAEMLETAAILKS 106 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeecccc--chhcCcChHHHHHHHHHHHHHh
Confidence 457999999999999998887663211110 111111111 001111 11122233344
Q ss_pred CCceEEEEEcCCCCC-CcccHH----HHHhhcccCCCCcEEEEeCCChHHHHhcC
Q 039853 118 SRKKFQLASGDMWKD-KYVDWT----NQRVLFVAVASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 118 ~~kr~LlVlDdv~~~-~~~~~~----~l~~~l~~~~~gs~IiiTTR~~~v~~~~~ 167 (206)
-..+-|+++|..-.- +..+.. .+...+.. ..|+.+|++|....+...+.
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhh
Confidence 356889999988210 211111 11123322 34678999999877766543
No 330
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0025 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|..|.|||||.+.++.-.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999887543
No 331
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.99 E-value=0.0036 Score=48.76 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|+|||||++.++...
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987654
No 332
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.98 E-value=0.0035 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHhcChh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
|.|.|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999887653
No 333
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.98 E-value=0.0009 Score=50.64 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
...++++|+|..|+|||||++.+......
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 45679999999999999999988766543
No 334
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.98 E-value=0.0035 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||.+.++.-
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988644
No 335
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.98 E-value=0.0028 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||++.++...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987654
No 336
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0024 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||++.++.-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887543
No 337
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.97 E-value=0.0027 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||.+.++.-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988643
No 338
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.96 E-value=0.0032 Score=52.13 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=56.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhh-----CCCC-------CCCCCCCHHHHHHHHHhhhCCceEEEEE
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTI-----SPET-------ASASDDNLNSLQVKLKSGLSRKKFQLAS 126 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~-----~~~~-------~~~~~~~~~~~~~~l~~~l~~kr~LlVl 126 (206)
..+.|.|..|+|||||++.+........ .++.. .... ........-...+.+...|+...-.+++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~ 224 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIIL 224 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEE
Confidence 5899999999999999998886653322 11100 0000 0000111123445566777888888999
Q ss_pred cCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHH
Q 039853 127 GDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 127 Ddv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~ 164 (206)
|.+. +.+.+.. ...+..+..| ++.|+...+...
T Consensus 225 gE~r--~~e~~~~-l~a~~~g~~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 225 GELR--GDEAFDF-IRAVNTGHPG--SITTLHAGSPEE 257 (308)
T ss_pred eccC--CHHHHHH-HHHHhcCCCe--EEEEEeCCCHHH
Confidence 9998 6655543 3333322222 466766655443
No 339
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00093 Score=60.13 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=47.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH--HHhhhCCCCCCCCCCCHHHHHHHHHh----hhCCceEEEEEcCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS--IHNTISPETASASDDNLNSLQVKLKS----GLSRKKFQLASGDMWK 131 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~ 131 (206)
...-|.|.|+.|+|||+||+++++...... ...-+.... ......+..++.+.. ++...+-++||||++.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~--l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST--LDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh--ccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 456799999999999999999988775332 111112222 233445656655544 4566789999999974
No 340
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.96 E-value=0.0036 Score=54.76 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=33.9
Q ss_pred HHhhhCCceEEEEEcCCCCC-CcccHHHHHhhcccCCCCcEEEEeCCChHHHHhcCC
Q 039853 113 LKSGLSRKKFQLASGDMWKD-KYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMGT 168 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~ 168 (206)
|.+.|-.++-||.||+-.+. +.+.-.-+-..|.....+ .++|++|+++.....++
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhh
Confidence 56666678899999987632 332222233444433333 68999999887765543
No 341
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.95 E-value=0.0074 Score=50.16 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
...+..++... +-|.|.|.+|+|||++|+.++.....
T Consensus 54 ~~~vl~~l~~~---------~~ilL~G~pGtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 54 TKAICAGFAYD---------RRVMVQGYHGTGKSTHIEQIAARLNW 90 (327)
T ss_pred HHHHHHHHhcC---------CcEEEEeCCCChHHHHHHHHHHHHCC
Confidence 45566666443 35999999999999999998776543
No 342
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.94 E-value=0.004 Score=48.11 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|..|.|||||.+.++...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999998886543
No 343
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.94 E-value=0.0037 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||++.++...
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999887543
No 344
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.94 E-value=0.0014 Score=58.01 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=37.1
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....++|+... ++++.+.+..-.. ...-|.|+|..|+|||++|+.++...
T Consensus 185 ~~~~iig~s~~--------~~~~~~~i~~~a~-----~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPA--------MQQLKKEIEVVAA-----SDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHH--------HHHHHHHHHHHhC-----CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34568999888 6666666644332 33579999999999999999988654
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.93 E-value=0.00062 Score=51.49 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999887653
No 346
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.93 E-value=0.0039 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887653
No 347
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.93 E-value=0.0046 Score=56.85 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..++|+|..|+|||||++.+..-+.
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999999998865543
No 348
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.93 E-value=0.0044 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|..|.|||||.+.++.-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988654
No 349
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0065 Score=47.43 Aligned_cols=56 Identities=7% Similarity=-0.045 Sum_probs=35.0
Q ss_pred HHHhhhCCceEEEEEcCCCC-CCcccHHHHHhhccc-CCCCcEEEEeCCChHHHHhcC
Q 039853 112 KLKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVA-VASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~IiiTTR~~~v~~~~~ 167 (206)
.+.+.|.-++-++.||..-. .+++........+.. ...|-..++.|..-..+..+.
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 36777877888999998762 244444444433332 245667788888866666543
No 350
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.93 E-value=0.00078 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++++|+|++|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 351
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.92 E-value=0.0037 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999887543
No 352
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.004 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|+|||||++.++.-.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999886543
No 353
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.92 E-value=0.0017 Score=55.33 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHhhhCCceEEEEEcCCCCC-CcccHHHHHhhcccC--CCCcEEEEeCCChHHHHhcCCCC
Q 039853 112 KLKSGLSRKKFQLASGDMWKD-KYVDWTNQRVLFVAV--ASRRKVIVTTRNQGVTSIMGTMP 170 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~~~~~ 170 (206)
+|...+..+.-+++.|.+... +.-....+...+... ..|+.+++.|+.+++.....+..
T Consensus 517 KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred HHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 466777788889999987631 222333344444433 36888888888888887765543
No 354
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.92 E-value=0.00073 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999876643
No 355
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.003 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.|+|+|++|+|||||-+.++-=.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999886443
No 356
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0059 Score=51.98 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=53.4
Q ss_pred hhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-HHhhhCCCCCCCCCCCHHHHHHHHH
Q 039853 36 ADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-IHNTISPETASASDDNLNSLQVKLK 114 (206)
Q Consensus 36 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~ 114 (206)
-.++.|++.|...-..... +....+-|..+|+||.|||..|+.++.+.-.++ ++. +... .+-....-....++.
T Consensus 361 psLe~Rie~lA~aTaNTK~--h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mT--GGDV-APlG~qaVTkiH~lF 435 (630)
T KOG0742|consen 361 PSLEKRIEDLAIATANTKK--HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMT--GGDV-APLGAQAVTKIHKLF 435 (630)
T ss_pred HHHHHHHHHHHHHhccccc--ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhc--CCCc-cccchHHHHHHHHHH
Confidence 3455556665554444333 444578899999999999999999998876665 211 1111 011112223334556
Q ss_pred hhhC--CceEEEEEcCCC
Q 039853 115 SGLS--RKKFQLASGDMW 130 (206)
Q Consensus 115 ~~l~--~kr~LlVlDdv~ 130 (206)
+|-+ .+-.||.+|..+
T Consensus 436 DWakkS~rGLllFIDEAD 453 (630)
T KOG0742|consen 436 DWAKKSRRGLLLFIDEAD 453 (630)
T ss_pred HHHhhcccceEEEehhhH
Confidence 6654 345677788775
No 357
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.92 E-value=0.00056 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999886643
No 358
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.91 E-value=0.0075 Score=47.12 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-.+++|.|+.|.|||||++.++.-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 359
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.91 E-value=0.00014 Score=61.39 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=73.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH---------------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------------IHNTISPETASASDDNLNSLQVKLKSGLS 118 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 118 (206)
..+.+.++|.|||||||++-.+.. .+..+ +...++-.. .+-+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHHHh
Confidence 458999999999999999988777 33322 111121111 122334445667778
Q ss_pred CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHHhcCCCCceeCCCCCHH-HHHHHHhhcc
Q 039853 119 RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMGTMPAYELKKLVND-SCRLIFSQHP 190 (206)
Q Consensus 119 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~a 190 (206)
++|.++|+||..+. .+.-..+.-.+..+++.-.|+.|+|..-.. .+...+.+++|+.. ++.++|...+
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHH
Confidence 89999999997621 011111223344445555688888875433 23345778888755 6888876654
No 360
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0033 Score=50.55 Aligned_cols=107 Identities=9% Similarity=0.030 Sum_probs=60.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------------------HHhhhCCCC----CCCCCCCHHHHHH-
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------------------IHNTISPET----ASASDDNLNSLQV- 111 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------------i~~~~~~~~----~~~~~~~~~~~~~- 111 (206)
-.+++|+|.+|+|||||++.+..=..... ++..++... .-+..-+-.+.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 35899999999999999998854332111 555544222 1122223333333
Q ss_pred HHHhhhCCceEEEEEcCCCC-CCcccHHHHHhhccc--CCCCcEEEEeCCChHHHHhcC
Q 039853 112 KLKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVA--VASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~IiiTTR~~~v~~~~~ 167 (206)
-+.+.|.-+.-|+|.|..-. .+...-.++...+.+ ...|-..+..|.+-.+...+.
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 25677778889999997541 122222333322221 223445677777766666554
No 361
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.91 E-value=0.00062 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999887764
No 362
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.004 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|..|.|||||++.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987543
No 363
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0046 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+++|.|..|.|||||.+.++....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999876653
No 364
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.90 E-value=0.0052 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|.|||||.+.++.-.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987554
No 365
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.90 E-value=0.006 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..++|+|..|.|||||++.+...+.
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999876553
No 366
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.90 E-value=0.00079 Score=50.03 Aligned_cols=28 Identities=32% Similarity=0.269 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
..+|-|.|.+|+||||||+++..+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999988776543
No 367
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.90 E-value=0.0017 Score=46.95 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.++.+.|.-|.|||||++.++....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999876653
No 368
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.90 E-value=0.00041 Score=64.72 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHh----------------hhCCCCCCCCCCCHHHHHHHHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHN----------------TISPETASASDDNLNSLQVKLK 114 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~----------------~~~~~~~~~~~~~~~~~~~~l~ 114 (206)
..-+.|+|.+|.||||+.+.++-....+. .+. .+.... ..............
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~ 299 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEEL--FSQGIAKQLIEAHQ 299 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHH--hccCCcchhhHHHH
Confidence 45799999999999998876653332111 000 000000 00011111111224
Q ss_pred hhhCCceEEEEEcCCCCCCccc----HHHHHhhcccCCCCcEEEEeCCChHHHHhcCCCCceeCCCCCHHHH
Q 039853 115 SGLSRKKFQLASGDMWKDKYVD----WTNQRVLFVAVASRRKVIVTTRNQGVTSIMGTMPAYELKKLVNDSC 182 (206)
Q Consensus 115 ~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~~a 182 (206)
++++..++|+.+|+++...... ...+...++ .-+.+.+|+|+|.............+.+..+.++.-
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i 370 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQI 370 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhhhccchhhhHHHH
Confidence 6788899999999988532211 111222222 234778999999866655443333455555554433
No 369
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.89 E-value=0.00051 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhcCh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~ 85 (206)
|-|+|.+|+|||+||..++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999877664
No 370
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0041 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++.-.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887544
No 371
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0044 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 599999999999999999987543
No 372
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0045 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||++.++.-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988654
No 373
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.075 Score=43.83 Aligned_cols=139 Identities=9% Similarity=-0.086 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh---h-----HHH---HHhhhCCCCCCCCCCCHHHHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK---T-----VNS---IHNTISPETASASDDNLNSLQ 110 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~-----~~~---i~~~~~~~~~~~~~~~~~~~~ 110 (206)
++.+.+.+.... -.++..++|..|.||+++|..+.+.. . ... -...+... ......++..
T Consensus 5 ~~~l~~~i~~~~------l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i~vd~Ir 75 (299)
T PRK07132 5 IKFLDNSATQNK------ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDLSKSEFL 75 (299)
T ss_pred HHHHHHHHHhCC------CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcCCHHHHH
Confidence 455555554332 34788899999999999998765543 0 000 00000000 1223344444
Q ss_pred HHHHhh--hC---CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHHH-hcCCCCceeCCCCCHHHHH
Q 039853 111 VKLKSG--LS---RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVTS-IMGTMPAYELKKLVNDSCR 183 (206)
Q Consensus 111 ~~l~~~--l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~-~~~~~~~~~l~~L~~~~a~ 183 (206)
+..... .. +++-++|+|+++..+......++..+..-++++.+|++|.+ ..+.. .......+++.+++.++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 433322 12 47778999999876777788888888877777777765543 44432 2333467999999999998
Q ss_pred HHHhhc
Q 039853 184 LIFSQH 189 (206)
Q Consensus 184 ~Lf~~~ 189 (206)
+.+...
T Consensus 156 ~~l~~~ 161 (299)
T PRK07132 156 AKLLSK 161 (299)
T ss_pred HHHHHc
Confidence 877664
No 374
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.89 E-value=0.0019 Score=52.88 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHH
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPV 81 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v 81 (206)
..+.+|+|.|..|+||||+|+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999999755
No 375
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.00061 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
+|+|.|++|+||||+|+.++.+....+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~ 28 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL 28 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce
Confidence 689999999999999999988874433
No 376
>PRK00625 shikimate kinase; Provisional
Probab=96.88 E-value=0.00067 Score=51.41 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcChh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.|.|+|++|+||||+++.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999977654
No 377
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.87 E-value=0.0085 Score=45.30 Aligned_cols=55 Identities=5% Similarity=-0.024 Sum_probs=36.0
Q ss_pred HHHhhhCCceEEEEEcCCC-CC---CcccHHHHHhhcccCCCCcEEEEeCCChHHHHhcC
Q 039853 112 KLKSGLSRKKFQLASGDMW-KD---KYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMG 167 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~-~~---~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~ 167 (206)
.+.+.+...+-+|+-|.-- |. .-+...++...+. ...|+.+++.|.++.++.-|.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceEEEEeCCHHHHHhhh
Confidence 4667777788888888532 11 2223333443333 467888999999999988764
No 378
>PRK06217 hypothetical protein; Validated
Probab=96.86 E-value=0.00069 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.|.|.|.+|+||||||+++......
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999998877643
No 379
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.86 E-value=0.00046 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
-..++|.|.+|.|||+|++.+++....+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~ 96 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA 96 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc
Confidence 3578999999999999999988776543
No 380
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.86 E-value=0.0042 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.++++.|+.|.|||||.+.+..-.+
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999975553
No 381
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0034 Score=57.06 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCC-----CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHH
Q 039853 42 EEGTVELILKDDS-----ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSL 109 (206)
Q Consensus 42 ~~~l~~~l~~~~~-----~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~ 109 (206)
+..|.+-+.-+-. .++-.+.+=|.++|+||.|||-||++|+......+ +++.--.++ .+.+
T Consensus 681 K~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS-------E~NV 753 (953)
T KOG0736|consen 681 KTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS-------EENV 753 (953)
T ss_pred HHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch-------HHHH
Confidence 6666666532110 01223356789999999999999999998876554 554433332 2344
Q ss_pred HHHHHhhhCCceEEEEEcCCCC
Q 039853 110 QVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 110 ~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
.+-+.+.=...+|.|.||.++.
T Consensus 754 R~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 754 REVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHhhccCCeEEEeccccc
Confidence 4444444456899999999884
No 382
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.84 E-value=0.00066 Score=53.46 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|.+|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999998887554
No 383
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.84 E-value=0.0012 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...++.|.|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999887665
No 384
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.84 E-value=0.0045 Score=49.13 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999887543
No 385
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0052 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+++|.|+.|.|||||.+.++.-..
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCC
Confidence 5899999999999999999975543
No 386
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0056 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|+|||||.+.++...
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999887554
No 387
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.83 E-value=0.0046 Score=48.74 Aligned_cols=105 Identities=9% Similarity=0.004 Sum_probs=56.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh-hHHH------------HHhh----hCCCC-CCCCCCCHHHHHHHHHhhhC--Cc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK-TVNS------------IHNT----ISPET-ASASDDNLNSLQVKLKSGLS--RK 120 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~------------i~~~----~~~~~-~~~~~~~~~~~~~~l~~~l~--~k 120 (206)
.+++.|.|+.|.||||+.+.+.... ..+. +..+ ++... ..........-..++...++ .+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 4688999999999999988776522 1111 2212 22111 00011112222233444443 47
Q ss_pred eEEEEEcCCCCC-C-cc--c-HHHHHhhcccCCCCcEEEEeCCChHHHHhc
Q 039853 121 KFQLASGDMWKD-K-YV--D-WTNQRVLFVAVASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 121 r~LlVlDdv~~~-~-~~--~-~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~ 166 (206)
+.|+++|..-.- + .+ . ...+...+... .++.+|++|.+..++...
T Consensus 111 ~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 111 RSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 899999996421 1 11 1 11233334322 578899999998887654
No 388
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.83 E-value=0.00066 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
No 389
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.82 E-value=0.0048 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|.|||||.+.+..-.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999886544
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.82 E-value=0.0028 Score=52.67 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
....+++++|++|+||||++..++....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3568999999999999999887765553
No 391
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0089 Score=45.67 Aligned_cols=49 Identities=12% Similarity=-0.071 Sum_probs=30.7
Q ss_pred HHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcc-cCCCCcEEEEeCCChH
Q 039853 113 LKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFV-AVASRRKVIVTTRNQG 161 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~-~~~~gs~IiiTTR~~~ 161 (206)
+.+..-.++-|.|||.... .+...-..+...+. ....|..||.||..+.
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 4555567788999998652 23444444443333 3467778999997654
No 392
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.81 E-value=0.00071 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987764
No 393
>PRK05439 pantothenate kinase; Provisional
Probab=96.81 E-value=0.0027 Score=52.51 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=22.9
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 58 DGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 58 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+.+.+|+|.|.+|+||||+|+.+...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999877653
No 394
>PRK14529 adenylate kinase; Provisional
Probab=96.81 E-value=0.0039 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHhcChhHH
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
|.|.|++|+||||+|+.++..+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~ 27 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA 27 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Confidence 7889999999999998887666443
No 395
>PRK05973 replicative DNA helicase; Provisional
Probab=96.80 E-value=0.004 Score=49.53 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.-.++.|.|.+|+|||+||..+...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999776543
No 396
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.79 E-value=0.0075 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
-..++|+|..|.|||||++.+..-+.
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 36789999999999999998866553
No 397
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.79 E-value=0.0069 Score=47.06 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=32.6
Q ss_pred HHhhhCCceEEEEEcCCCC-CCcccHH-HHHhhcccCCC--CcEEEEeCCChHHHHh
Q 039853 113 LKSGLSRKKFQLASGDMWK-DKYVDWT-NQRVLFVAVAS--RRKVIVTTRNQGVTSI 165 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~-~~~~~~~-~l~~~l~~~~~--gs~IiiTTR~~~v~~~ 165 (206)
+.+.+..+.-++++|+... .+..... .+...+..... |..||++|.+......
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 3445566788999998763 2444444 45554443322 5578999988776643
No 398
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.79 E-value=0.004 Score=55.81 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|..|.|||||++.+...+
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 578999999999999999886544
No 399
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0038 Score=55.65 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=63.6
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISP 96 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~ 96 (206)
++.|.++. ++.+.+++++|..+... .+..-++-+.++|++|.|||.||++++....+-+ +++.+-.
T Consensus 151 DVAG~dEa-----keel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG 225 (596)
T COG0465 151 DVAGVDEA-----KEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 225 (596)
T ss_pred hhcCcHHH-----HHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence 34465554 22377888888765421 1224577899999999999999999998887665 5555433
Q ss_pred CCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 97 ETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
.. .....+.+.+..+.-+|.+++|.++.
T Consensus 226 vG-------AsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 226 VG-------ASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred CC-------cHHHHHHHHHhhccCCCeEEEehhhh
Confidence 32 23444555666666789999998874
No 400
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.78 E-value=0.0049 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|..|.|||||++.+....
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCC
Confidence 4689999999999999999885443
No 401
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.78 E-value=0.0011 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.+++|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999988765
No 402
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.78 E-value=0.0013 Score=50.38 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.+++.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999997764
No 403
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0059 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++.-.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987554
No 404
>PRK14530 adenylate kinase; Provisional
Probab=96.77 E-value=0.00089 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.|.|+|++|+||||+|+.++.....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998766644
No 405
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.77 E-value=0.0064 Score=47.87 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|..|.|||||++.++.-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988744
No 406
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.76 E-value=0.0029 Score=48.69 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=55.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh--hHHH---------H-----HhhhC---CCCCCCC---------------CCCHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK--TVNS---------I-----HNTIS---PETASAS---------------DDNLN 107 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~--~~~~---------i-----~~~~~---~~~~~~~---------------~~~~~ 107 (206)
.+++|.|..|.|||||.+.++.-. .... + ...+. ....... ..+..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G 115 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGG 115 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHH
Confidence 589999999999999999887754 3221 0 00011 0000000 01111
Q ss_pred HHH-HHHHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC-CCCcEEEEeCCChH
Q 039853 108 SLQ-VKLKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV-ASRRKVIVTTRNQG 161 (206)
Q Consensus 108 ~~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~ 161 (206)
+.+ -.+...+-.++-++++|+... .+......+...+... ..|..||++|.+..
T Consensus 116 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 116 ERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 111 124455555677999998653 2444444554444432 24677888888864
No 407
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.76 E-value=0.009 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.+++|.|+.|.|||||.+.+..-.
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999987654
No 408
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0014 Score=50.62 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+...++.|+|.+|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999887754
No 409
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.76 E-value=0.00082 Score=48.16 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=16.7
Q ss_pred EEEEcCCCchHHHHHHHHhcChh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
|.|+|.+|+|||++|+.++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 67999999999999998876553
No 410
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.75 E-value=0.005 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|+.|.|||||++.+....
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999886544
No 411
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.75 E-value=0.01 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|+.|.|||||++.+..-+
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3689999999999999999886554
No 412
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0036 Score=50.10 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=43.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..++-|.++|++|.|||.||++++++-...+ |++....+. +......++-.-.+-+.++.+|.++.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg-------prmvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG-------PRMVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC-------cHHHHHHHHHHhccCCcEEEeehhhh
Confidence 4568899999999999999999999876554 444443332 12222222222234577888898763
No 413
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.75 E-value=0.0011 Score=50.54 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|.+|+||||||..+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887664
No 414
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.74 E-value=0.0013 Score=50.95 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988775
No 415
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.74 E-value=0.0031 Score=53.28 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++++.+..-. +-..+.|+|.+|+|||||++.+++..
T Consensus 120 ~~RvID~l~PiG------kGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 120 SMRVVDLVAPIG------KGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred hHhhhhheeecC------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 556777775432 22467999999999999998876644
No 416
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.74 E-value=0.0036 Score=52.04 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=41.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCC---CCCCCCCHHHHHHHHHhhhC-Cc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPET---ASASDDNLNSLQVKLKSGLS-RK 120 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-~k 120 (206)
.-+++-|+|++|+||||||..++....... .++.++... ......+.++....+...++ +.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 557899999999999999987664432111 333332211 01122234555555544443 35
Q ss_pred eEEEEEcCCC
Q 039853 121 KFQLASGDMW 130 (206)
Q Consensus 121 r~LlVlDdv~ 130 (206)
.-++|+|.+.
T Consensus 134 ~~lIVIDSva 143 (325)
T cd00983 134 VDLIVVDSVA 143 (325)
T ss_pred CCEEEEcchH
Confidence 6699999875
No 417
>PRK13947 shikimate kinase; Provisional
Probab=96.74 E-value=0.001 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
-|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999998876543
No 418
>PLN02674 adenylate kinase
Probab=96.73 E-value=0.0055 Score=48.95 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
...|.|.|++|+||||+|+.++.++...+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 35688999999999999999988765433
No 419
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0072 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.+++|.|+.|.|||||.+.++...
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999987654
No 420
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.72 E-value=0.0078 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||++.+....
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999987543
No 421
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.72 E-value=0.00066 Score=55.19 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=28.2
Q ss_pred hHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 41 REEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 41 ~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
|...+++.++... +-+.++|++|+|||++++......
T Consensus 21 r~~~ll~~l~~~~--------~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 21 RYSYLLDLLLSNG--------RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHHHCT--------EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcC--------CcEEEECCCCCchhHHHHhhhccC
Confidence 3566677776654 467999999999999998866543
No 422
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.72 E-value=0.0047 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+++|.|+.|.|||||.+.++.-..
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999999975543
No 423
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.72 E-value=0.0028 Score=54.97 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+.+|.++|.+|+||||+|..++....
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999887753
No 424
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0053 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++...
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999887553
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.71 E-value=0.0047 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+.|.|..|+|||||++.+....
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999877654
No 426
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.71 E-value=0.0072 Score=51.35 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=17.5
Q ss_pred CeeEEEEEcCCCchHHH-HHHH
Q 039853 60 GLSVTPVIGMGGSGNTT-LALP 80 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTt-LA~~ 80 (206)
+.++++++|+.|+|||| ||+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKL 223 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKL 223 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHH
Confidence 36899999999999998 5543
No 427
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.71 E-value=0.0074 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+++|.|+.|.|||||.+.++.-..
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5899999999999999999876543
No 428
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.69 E-value=0.0036 Score=52.02 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=41.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCC---CCCCCCCHHHHHHHHHhhhC-Cc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPET---ASASDDNLNSLQVKLKSGLS-RK 120 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-~k 120 (206)
.-+++-|+|++|+||||||..++....... .++.++... ........++....+...++ +.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 557999999999999999977654432111 333332211 00122234445555544443 35
Q ss_pred eEEEEEcCCC
Q 039853 121 KFQLASGDMW 130 (206)
Q Consensus 121 r~LlVlDdv~ 130 (206)
.-++|+|.+.
T Consensus 134 ~~lIVIDSv~ 143 (321)
T TIGR02012 134 VDIIVVDSVA 143 (321)
T ss_pred CcEEEEcchh
Confidence 6799999876
No 429
>PLN02200 adenylate kinase family protein
Probab=96.69 E-value=0.0014 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+.+|.|.|++|+||||+|+.++....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999998876553
No 430
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.68 E-value=0.0061 Score=51.22 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=55.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHH--H----------HHhhhCCC-C-CCCCCCCHHHHHHHHHhhhCCceEEEEEc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVN--S----------IHNTISPE-T-ASASDDNLNSLQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~--~----------i~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 127 (206)
..+.|.|+.|+||||+.+.+....... . +...-... . ......+.....+.++..|+...=.+++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 689999999999999998876543211 1 11000000 0 00001112335566778888888999999
Q ss_pred CCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHH
Q 039853 128 DMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGV 162 (206)
Q Consensus 128 dv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v 162 (206)
.+. +.+.+...... ...|-.++.|....+.
T Consensus 203 Eir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 203 EMR--DLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCC--CHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 998 77666543332 2345446666555443
No 431
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.68 E-value=0.01 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|.|||||.+.+..-
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988654
No 432
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.68 E-value=0.00099 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhcCh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~ 85 (206)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999877654
No 433
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0064 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|.|||||.+.++.-.
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 589999999999999999987554
No 434
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.66 E-value=0.0013 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHhcCh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~ 85 (206)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987655
No 435
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.65 E-value=0.0015 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHhcChhH
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
|.|+|.+|+|||||.+.++.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999998876644
No 436
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.65 E-value=0.0014 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++|+|++|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998774
No 437
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.64 E-value=0.0088 Score=46.94 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=53.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-------------HHhhhCCCCCCCC--CCCHHHH---HHHHHhhhC--Cce
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-------------IHNTISPETASAS--DDNLNSL---QVKLKSGLS--RKK 121 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------i~~~~~~~~~~~~--~~~~~~~---~~~l~~~l~--~kr 121 (206)
.+++|.|+.|.||||+.+.+..-.-... +..++.......+ ....... ...+...+. .++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 7899999999999999988742110000 1112211110000 0011111 122344443 478
Q ss_pred EEEEEcCCCCC-Cccc----HHHHHhhcccCCCCcEEEEeCCChHHHHhc
Q 039853 122 FQLASGDMWKD-KYVD----WTNQRVLFVAVASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 122 ~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~ 166 (206)
-|+++|..-.- +..+ ...+...+... .++.+|++|.+..+....
T Consensus 111 ~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~ 159 (216)
T cd03284 111 SLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELE 159 (216)
T ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHh
Confidence 89999987210 2112 12233333322 367799999997766543
No 438
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.64 E-value=0.0051 Score=52.92 Aligned_cols=26 Identities=35% Similarity=0.261 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+-+.++|++|+|||+||+.++....
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999876543
No 439
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.64 E-value=0.013 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|..|.|||||++.++...
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999886654
No 440
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.63 E-value=0.0073 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|+|||||.+.++.-.
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987544
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0015 Score=49.01 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHh
Q 039853 63 VTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~ 82 (206)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998876
No 442
>PLN02348 phosphoribulokinase
Probab=96.63 E-value=0.0016 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.+.+|+|.|.+|+||||||+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887654
No 443
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.63 E-value=0.0069 Score=46.80 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=19.6
Q ss_pred eEEEEEcCCCchHHHHHHHHh
Q 039853 62 SVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~ 82 (206)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999998876
No 444
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0015 Score=50.54 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
..+|+|-|+=|+||||||+.+.++.....
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCce
Confidence 47899999999999999999998886443
No 445
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.61 E-value=0.0015 Score=47.75 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
++|.|+|..|+|||||++.+.+....
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~ 26 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR 26 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH
Confidence 48999999999999999998877643
No 446
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.61 E-value=0.0018 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997664
No 447
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.61 E-value=0.008 Score=48.65 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=46.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH-HH---HHh-----hhCC-CCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV-NS---IHN-----TISP-ETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~---i~~-----~~~~-~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..+.|.|..|+||||++..+...... .. .++ .+.. ..............+.++..|+...-.++++++.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR- 159 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR- 159 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC-
Confidence 58999999999999999877554421 11 000 0000 0000011111235566777888888889999998
Q ss_pred CCcccHHHHHhh
Q 039853 132 DKYVDWTNQRVL 143 (206)
Q Consensus 132 ~~~~~~~~l~~~ 143 (206)
+.+....+...
T Consensus 160 -~~e~a~~~~~a 170 (264)
T cd01129 160 -DAETAEIAVQA 170 (264)
T ss_pred -CHHHHHHHHHH
Confidence 66654444433
No 448
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.61 E-value=0.0075 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|..|.|||||++.++.-
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988744
No 449
>PRK13975 thymidylate kinase; Provisional
Probab=96.60 E-value=0.0016 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..|+|.|+.|+||||+|+.++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999887754
No 450
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.59 E-value=0.011 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
-..++|+|+.|.|||||++.+.....
T Consensus 368 G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 368 GDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999998866443
No 451
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.59 E-value=0.0097 Score=55.06 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=49.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-----------HHhhhCCCCCCCCCCCHHHHHHHHHhhh--CCceEEEEEcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-----------IHNTISPETASASDDNLNSLQVKLKSGL--SRKKFQLASGD 128 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDd 128 (206)
+++.|.|.+|.||||+++.+........ -...+.... .........+...+.... -.+.-|||+|+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~-g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE 447 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAES-GIESRTLASLEYAWANGRDLLSDKDVLVIDE 447 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhcc-CCceeeHHHHHhhhccCcccCCCCcEEEEEC
Confidence 5889999999999999988765443211 112221111 011122222211111100 12457999999
Q ss_pred CCCCCcccHHHHHhhcccCCCCcEEEEeC
Q 039853 129 MWKDKYVDWTNQRVLFVAVASRRKVIVTT 157 (206)
Q Consensus 129 v~~~~~~~~~~l~~~l~~~~~gs~IiiTT 157 (206)
+...+...+..+..... ..|++||+.=
T Consensus 448 asMv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 448 AGMVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred cccCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 87666555555544221 2567776653
No 452
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.59 E-value=0.0016 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999877654
No 453
>PLN02459 probable adenylate kinase
Probab=96.58 E-value=0.0027 Score=51.17 Aligned_cols=70 Identities=13% Similarity=-0.001 Sum_probs=40.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-----HHhh-hCCCC----------CCCCCCCHHHHHHHHHhhhCC----ce
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-----IHNT-ISPET----------ASASDDNLNSLQVKLKSGLSR----KK 121 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----i~~~-~~~~~----------~~~~~~~~~~~~~~l~~~l~~----kr 121 (206)
..+.|.|++|+||||+|+.+...+...+ +++. +.... ........+.....+.+.+.. .+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~ 109 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGE 109 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence 3477789999999999999887664433 2222 11110 011233344444555555532 34
Q ss_pred EEEEEcCCCC
Q 039853 122 FQLASGDMWK 131 (206)
Q Consensus 122 ~LlVlDdv~~ 131 (206)
.-+|||++-.
T Consensus 110 ~g~iLDGFPR 119 (261)
T PLN02459 110 SGFILDGFPR 119 (261)
T ss_pred ceEEEeCCCC
Confidence 5689999863
No 454
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.58 E-value=0.015 Score=43.59 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++.+.|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999988776543
No 455
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0096 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||.+.++...
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~ 49 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999886543
No 456
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.58 E-value=0.011 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|+|||||.+.++.-.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999887543
No 457
>PRK13949 shikimate kinase; Provisional
Probab=96.57 E-value=0.0015 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhH
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
-|.|+|++|+||||+++.++.....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999988876543
No 458
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.57 E-value=0.0013 Score=53.05 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 58 DGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 58 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
.+++.+|.++||+|+||||+.+.++.+...+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 35678899999999999999999987775544
No 459
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.57 E-value=0.0091 Score=54.94 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|+|..|+|||||++.+..-+
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999886554
No 460
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.018 Score=46.17 Aligned_cols=157 Identities=12% Similarity=0.034 Sum_probs=84.4
Q ss_pred HHHhhhccCCceeee-cccchhhhHHhHHHHHHHHhCCCC-C-----CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 16 LFKKLAAKGLQLFAR-QQQIQADMKKREEGTVELILKDDS-E-----CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 16 ~~~~l~~~~~~~~Gr-~~~~~~~~~~~~~~l~~~l~~~~~-~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
...+.|......+|+ ++. +++|.+.+.-+-. + -+-.+++-+.++|++|-|||-||++++++..-.
T Consensus 137 mVeKvPDStYeMiGgLd~Q--------IkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~ 208 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQ--------IKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 208 (404)
T ss_pred hhhhCCccHHHHhccHHHH--------HHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE
Confidence 445666666777775 444 5555554432211 0 133467889999999999999999999876433
Q ss_pred H-------HHhhhCCCCCCCCCCCHHHHHHHH-HhhhCCceEEEEEcCCCCCCc-----------ccHH---HHHhhccc
Q 039853 89 S-------IHNTISPETASASDDNLNSLQVKL-KSGLSRKKFQLASGDMWKDKY-----------VDWT---NQRVLFVA 146 (206)
Q Consensus 89 ~-------i~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~-----------~~~~---~l~~~l~~ 146 (206)
+ +++..-.+. ......+ .-.-..-+..+..|.++.... +... .++..+..
T Consensus 209 firvsgselvqk~igeg--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 209 FIRVSGSELVQKYIGEG--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred EEEechHHHHHHHhhhh--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 2 444443222 1111111 111133567888888874211 1111 13333332
Q ss_pred --CCCCcEEEEeCCChHHHH--hcCC---CCceeCCCCCHHHHHHHHhh
Q 039853 147 --VASRRKVIVTTRNQGVTS--IMGT---MPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 147 --~~~gs~IiiTTR~~~v~~--~~~~---~~~~~l~~L~~~~a~~Lf~~ 188 (206)
..+.-+||..|..-++.. ..++ ..-++.++-+.+.-.++++-
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 245667888765544432 1222 23466666666665666653
No 461
>PRK09354 recA recombinase A; Provisional
Probab=96.56 E-value=0.009 Score=50.16 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=42.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCC---CCCCCCCHHHHHHHHHhhhC-Cc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPET---ASASDDNLNSLQVKLKSGLS-RK 120 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-~k 120 (206)
.-+++-|+|++|+||||||..++....... .++.++... ........++....+...++ +.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~ 138 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGA 138 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 567999999999999999977654332111 333333211 00112234455555544443 35
Q ss_pred eEEEEEcCCCC
Q 039853 121 KFQLASGDMWK 131 (206)
Q Consensus 121 r~LlVlDdv~~ 131 (206)
.-++|+|.+..
T Consensus 139 ~~lIVIDSvaa 149 (349)
T PRK09354 139 VDLIVVDSVAA 149 (349)
T ss_pred CCEEEEeChhh
Confidence 66999998763
No 462
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.56 E-value=0.0049 Score=51.46 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=38.2
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
...++|+++. ...+...++.... +.+.|.+|+|||+||+.++......
T Consensus 23 ~~~~~g~~~~--------~~~~l~a~~~~~~---------vll~G~PG~gKT~la~~lA~~l~~~ 70 (329)
T COG0714 23 EKVVVGDEEV--------IELALLALLAGGH---------VLLEGPPGVGKTLLARALARALGLP 70 (329)
T ss_pred CCeeeccHHH--------HHHHHHHHHcCCC---------EEEECCCCccHHHHHHHHHHHhCCC
Confidence 3338898888 7777777777754 8999999999999999988776533
No 463
>PRK14532 adenylate kinase; Provisional
Probab=96.56 E-value=0.0016 Score=49.70 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHhcChh
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
|.|.|++|+||||+|+.++....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999986653
No 464
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.56 E-value=0.0023 Score=56.59 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
++++..||...-. .....+++.+.|++|+||||.++.+++....
T Consensus 28 v~eV~~wl~~~~~--~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 28 VEEVRSWLEEMFS--GSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred HHHHHHHHHHHhc--cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 8888888875432 2334679999999999999999988877644
No 465
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0082 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|..|.|||||.+.++.-
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999988643
No 466
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=96.55 E-value=0.0046 Score=48.35 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCC-CCcccHHHHHhhcccCCCCcEEEEeCCChHHHHhc
Q 039853 120 KKFQLASGDMWK-DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 120 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~ 166 (206)
..-+++|||++. .+......+...+....+++.+||||.++.+...+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455899999984 35555666666776666778999999998887654
No 467
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0039 Score=51.19 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=42.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCCCCCCCCCCCHHHHHHHHHhhhC-CceEEEEEcCCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISPETASASDDNLNSLQVKLKSGLS-RKKFQLASGDMWK 131 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~ 131 (206)
..+..+.|||++|-|||-+|+.++....+.++ ...+-.. .......+.....++-+ ..+|.+.+|+++.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k----yiGEsaRlIRemf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK----YIGESARLIRDMFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh----hcccHHHHHHHHHHHHhhhCceEEeehhhhh
Confidence 45789999999999999999999988766651 1111000 11122233332222332 3579999999874
No 468
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.54 E-value=0.0015 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHhcChhH
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
+.|.|.+|+|||||.+.++...+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999998877743
No 469
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.54 E-value=0.0018 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.|+|+|-||+||||+|..++...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 478999999999999876665444
No 470
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.54 E-value=0.015 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|.|||||.+.++.-.
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999887443
No 471
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0085 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
+.|+|+|+.|+||+||...+.....
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC
Confidence 6899999999999999988876553
No 472
>PRK13808 adenylate kinase; Provisional
Probab=96.53 E-value=0.007 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHhcChhH
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
|.|+|+||+||||++..+...+..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 788999999999999988766543
No 473
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.53 E-value=0.015 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|..|.|||||.+.++.-
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 58999999999999999988744
No 474
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.52 E-value=0.0033 Score=56.26 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=38.1
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+|..+.|.+. .+.|.+..-... ....+|.|+|++|+||||+|+.++....
T Consensus 367 ~pP~~f~rpeV--------~~iL~~~~~~r~-----~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 367 EIPEWFSFPEV--------VAELRRTYPPRH-----KQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred CCChhhcHHHH--------HHHHHHHhcccc-----CCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 56667888887 776666553332 2456899999999999999999987664
No 475
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.52 E-value=0.0049 Score=46.06 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++.|.++|.. ++++++|.+|+|||||...+....
T Consensus 26 ~~~l~~~l~~----------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG----------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT----------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC----------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 7888887732 589999999999999999988775
No 476
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.51 E-value=0.0096 Score=51.83 Aligned_cols=119 Identities=8% Similarity=0.026 Sum_probs=63.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH--HHhhhCCCCCCCCCCCHHHHHHHHHh---------------hh-CCceEE
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS--IHNTISPETASASDDNLNSLQVKLKS---------------GL-SRKKFQ 123 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~l~~---------------~l-~~kr~L 123 (206)
..+.|.|.+|.||+++|+.++....... ++ .+ ++.....+.+...+.. .+ ....-.
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~-~~-----~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFI-AL-----NMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeE-EE-----eCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 4678999999999999998876542111 00 00 0011111111111100 01 112345
Q ss_pred EEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEEEeCCChHH------------HHhcCCCCceeCCCCC--
Q 039853 124 LASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVIVTTRNQGV------------TSIMGTMPAYELKKLV-- 178 (206)
Q Consensus 124 lVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTTR~~~v------------~~~~~~~~~~~l~~L~-- 178 (206)
|+||+++..+...+..+...+..+. .+.+||.||...-- ...+ ....+.+++|.
T Consensus 232 l~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R 310 (463)
T TIGR01818 232 LFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRL-NVIRIHLPPLRER 310 (463)
T ss_pred EEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHh-CcceecCCCcccc
Confidence 8899999777777777776665331 24578887754321 1111 12357888987
Q ss_pred HHHHHHHHh
Q 039853 179 NDSCRLIFS 187 (206)
Q Consensus 179 ~~~a~~Lf~ 187 (206)
.+|--.|+.
T Consensus 311 ~~Di~~l~~ 319 (463)
T TIGR01818 311 REDIPRLAR 319 (463)
T ss_pred hhhHHHHHH
Confidence 555554443
No 477
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.51 E-value=0.011 Score=51.88 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=39.7
Q ss_pred cccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 31 QQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
.+++..|-++ ++++..||..-......-+.+++.|.|++|+||||-.+.++...-.+
T Consensus 81 ~eeLAVHkkK-I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 81 LEELAVHKKK-ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred HHHHhhhHHh-HHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 3446777777 88999999710000022366899999999999999888877665443
No 478
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.51 E-value=0.022 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|.|||||++.++...
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHccc
Confidence 589999999999999999886553
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=96.51 E-value=0.0019 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|.+|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998654
No 480
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.012 Score=54.72 Aligned_cols=112 Identities=11% Similarity=0.036 Sum_probs=65.9
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCC-CCeeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHh
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECND-GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHN 92 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~ 92 (206)
...++|+++. +..|.+.+........+ .....+.+.|+.|+|||.||++++.-.--.. +.+
T Consensus 561 ~~~V~gQ~eA--------v~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e 632 (898)
T KOG1051|consen 561 HERVIGQDEA--------VAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE 632 (898)
T ss_pred HhhccchHHH--------HHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh
Confidence 3457788888 88888887655431111 3567889999999999999988765441111 111
Q ss_pred --hhCCCCCCCCCCCHHHHHHHHHhhhCCceE-EEEEcCCCCCCcccHHHHHhhccc
Q 039853 93 --TISPETASASDDNLNSLQVKLKSGLSRKKF-QLASGDMWKDKYVDWTNQRVLFVA 146 (206)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 146 (206)
.+.... ...--.....+|.+.++.++| .+.||+++.-+......+...+.+
T Consensus 633 vskligsp---~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 VSKLIGSP---PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhhccCCC---cccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 111111 111112223356677777766 666899985555555555555544
No 481
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.48 E-value=0.017 Score=51.36 Aligned_cols=55 Identities=13% Similarity=-0.010 Sum_probs=34.9
Q ss_pred HHHhhhCCceEEEEEcCCCCC-CcccHHHHHhhcccCCCCcEEEEeCCChHHHHhcCC
Q 039853 112 KLKSGLSRKKFQLASGDMWKD-KYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSIMGT 168 (206)
Q Consensus 112 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~ 168 (206)
.|.+.|-.++=+|+||.--|+ +.+...-+...|. .-+| .+||.|.++.....+.+
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK-RYPG-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCC-cEEEEeCCHHHHHHHhh
Confidence 356666677889999976642 3333222334443 3346 69999999988876543
No 482
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0021 Score=48.42 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
+-|.++|+.|+||||+.+.+++.....+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4588999999999999999977664444
No 483
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.48 E-value=0.016 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.++...
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887654
No 484
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.012 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++++|++|.||||+|..+-+
T Consensus 495 e~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999976643
No 485
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.46 E-value=0.0023 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..|.|+|+.|.||||||+.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999987654
No 486
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.45 E-value=0.0022 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|.+.|.+|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999987655
No 487
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.45 E-value=0.0059 Score=54.20 Aligned_cols=47 Identities=21% Similarity=0.076 Sum_probs=31.8
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..++|.... +.++++.+..-.. ...-|.|+|..|.||+.+|++++..
T Consensus 204 ~~~ig~s~~--------~~~~~~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPK--------MRQVVEQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHH--------HHHHHHHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHh
Confidence 367888776 5555554432111 1134889999999999999997654
No 488
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0068 Score=49.61 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=56.7
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCC-C----CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHh
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDS-E----CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHN 92 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~-~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~ 92 (206)
.++.|-+.. ++.|.+...-+-. + .....-+-|.++|++|.||+.||++|+......+ ++.
T Consensus 133 sDVAGLE~A--------KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 133 SDVAGLEGA--------KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred hhhccchhH--------HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 344555555 7776665533211 0 0112467899999999999999999987765332 444
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHhhh-CCceEEEEEcCCCC
Q 039853 93 TISPETASASDDNLNSLQVKLKSGL-SRKKFQLASGDMWK 131 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 131 (206)
....++ +.+...|.+.- +.++.+|.+|.++.
T Consensus 205 KWmGES--------EkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 205 KWMGES--------EKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHhccH--------HHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 443333 44555554444 35788999998873
No 489
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.44 E-value=0.026 Score=56.39 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=26.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
.++-|.++|++|.|||.||++++.+..+-.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPF 1658 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPF 1658 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCce
Confidence 457899999999999999999999886655
No 490
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.44 E-value=0.0042 Score=49.77 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
...+++.+..... +..+|+|.|+||+|||||...+...++.+
T Consensus 15 ~~~ll~~l~~~~g-----~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTG-----RAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT------SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcC-----CceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 5556666655432 56899999999999999998877666543
No 491
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.43 E-value=0.0023 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|.|.|.+|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999997654
No 492
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.02 Score=49.02 Aligned_cols=51 Identities=27% Similarity=0.214 Sum_probs=33.6
Q ss_pred hhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 37 DMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 37 ~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.++-..++|++.|-....+ -....+.+|-.+|.-|.||||-|-.+++..+.
T Consensus 74 ~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 74 FIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 3344456677766542211 12356789999999999999988776655544
No 493
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.42 E-value=0.0033 Score=51.68 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+++++.|-||+||||+|..++.-.
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 466999999999999999876654443
No 494
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.42 E-value=0.0048 Score=55.11 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+..+|+|.|.+|+||||||+.+....
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 67899999999999999999987653
No 495
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.41 E-value=0.017 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|..|+|||||.+.++.-.
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 589999999999999999886443
No 496
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.41 E-value=0.012 Score=53.98 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
-..++|+|..|+|||||++.+..-+..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 368999999999999999988665543
No 497
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.41 E-value=0.0033 Score=43.70 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.9
Q ss_pred eEEEEEcCCCchHHHHHHHHh
Q 039853 62 SVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~ 82 (206)
..++|.|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999998754
No 498
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.41 E-value=0.002 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.|.++|.+|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999887654
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.003 Score=48.07 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..++|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999998887
No 500
>PRK13409 putative ATPase RIL; Provisional
Probab=96.41 E-value=0.012 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|..|+|||||++.++...
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987654
Done!