Query 039853
Match_columns 206
No_of_seqs 199 out of 1532
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 03:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 2.4E-26 8.2E-31 201.8 12.1 156 19-195 123-311 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 2.4E-23 8.3E-28 196.0 13.8 153 19-193 118-302 (1249)
3 1vt4_I APAF-1 related killer D 99.8 2.4E-21 8.3E-26 177.4 11.3 140 27-189 130-310 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 3.6E-21 1.2E-25 169.8 11.6 151 19-192 118-301 (591)
5 2chg_A Replication factor C sm 99.4 2.2E-12 7.7E-17 98.8 9.9 152 23-190 15-174 (226)
6 1njg_A DNA polymerase III subu 99.4 2.7E-12 9.2E-17 99.4 9.8 153 23-190 21-198 (250)
7 1w5s_A Origin recognition comp 99.4 1.7E-12 5.7E-17 109.1 8.9 155 24-189 21-227 (412)
8 2qby_B CDC6 homolog 3, cell di 99.3 1.2E-11 4E-16 103.0 11.1 155 24-189 19-209 (384)
9 1sxj_B Activator 1 37 kDa subu 99.3 1.7E-11 5.9E-16 99.5 10.5 151 23-190 19-179 (323)
10 2qen_A Walker-type ATPase; unk 99.3 1.9E-11 6.5E-16 100.2 9.3 149 23-189 10-215 (350)
11 2v1u_A Cell division control p 99.2 2.6E-11 8.9E-16 100.7 9.1 155 23-189 17-213 (387)
12 2qby_A CDC6 homolog 1, cell di 99.2 1.8E-11 6.3E-16 101.5 7.7 154 24-189 19-209 (386)
13 1fnn_A CDC6P, cell division co 99.2 6.9E-11 2.4E-15 98.4 10.3 157 24-190 16-206 (389)
14 2fna_A Conserved hypothetical 99.2 3.8E-11 1.3E-15 98.6 7.2 147 23-189 11-221 (357)
15 1iqp_A RFCS; clamp loader, ext 99.1 1.4E-10 4.7E-15 94.4 6.7 152 23-190 23-182 (327)
16 1jbk_A CLPB protein; beta barr 99.1 4.2E-10 1.4E-14 84.0 8.5 141 23-186 20-194 (195)
17 2chq_A Replication factor C sm 99.0 6.9E-10 2.4E-14 89.9 6.0 151 24-190 16-174 (319)
18 1jr3_A DNA polymerase III subu 98.9 1.9E-09 6.5E-14 89.3 8.2 154 23-190 14-191 (373)
19 1sxj_D Activator 1 41 kDa subu 98.8 9.2E-09 3.1E-13 84.5 9.0 152 23-190 35-205 (353)
20 3te6_A Regulatory protein SIR3 98.8 5.2E-09 1.8E-13 85.5 6.9 161 14-190 9-211 (318)
21 3h4m_A Proteasome-activating n 98.8 4.9E-09 1.7E-13 83.9 6.3 156 25-191 17-202 (285)
22 3syl_A Protein CBBX; photosynt 98.8 2.5E-08 8.7E-13 80.6 8.7 162 12-190 21-217 (309)
23 3pvs_A Replication-associated 98.7 4.6E-08 1.6E-12 83.6 10.1 152 16-190 16-178 (447)
24 1sxj_E Activator 1 40 kDa subu 98.7 4.8E-08 1.6E-12 80.4 8.7 152 24-190 13-206 (354)
25 2p65_A Hypothetical protein PF 98.7 1.5E-08 5.1E-13 75.3 5.2 48 23-85 20-67 (187)
26 3u61_B DNA polymerase accessor 98.7 2.8E-08 9.5E-13 81.0 7.1 136 23-182 24-170 (324)
27 3pfi_A Holliday junction ATP-d 98.7 8.2E-09 2.8E-13 84.6 3.9 157 16-190 19-197 (338)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.7 1.9E-08 6.5E-13 79.2 5.7 131 60-190 38-190 (262)
29 1hqc_A RUVB; extended AAA-ATPa 98.6 5.5E-08 1.9E-12 79.0 7.4 151 23-190 10-181 (324)
30 1sxj_C Activator 1 40 kDa subu 98.6 1.1E-07 3.6E-12 78.2 8.8 148 24-190 24-182 (340)
31 1d2n_A N-ethylmaleimide-sensit 98.6 9.1E-08 3.1E-12 76.1 6.9 156 25-188 33-210 (272)
32 2z4s_A Chromosomal replication 98.6 1.1E-07 3.7E-12 81.1 7.8 123 61-190 130-276 (440)
33 3bos_A Putative DNA replicatio 98.6 3.8E-08 1.3E-12 76.1 4.6 133 42-190 40-187 (242)
34 3eie_A Vacuolar protein sortin 98.5 4.3E-07 1.5E-11 74.1 10.1 150 25-191 18-198 (322)
35 1sxj_A Activator 1 95 kDa subu 98.5 6E-07 2.1E-11 78.0 11.4 153 23-190 37-222 (516)
36 1a5t_A Delta prime, HOLB; zinc 98.5 3.1E-06 1E-10 69.5 15.0 144 40-190 9-180 (334)
37 3ec2_A DNA replication protein 98.5 8.3E-08 2.8E-12 71.6 4.9 106 42-159 23-142 (180)
38 3n70_A Transport activator; si 98.5 1E-07 3.6E-12 68.8 4.9 112 26-159 2-115 (145)
39 3uk6_A RUVB-like 2; hexameric 98.5 3.1E-07 1.1E-11 75.9 8.2 69 121-190 190-272 (368)
40 1l8q_A Chromosomal replication 98.5 1.7E-07 5.9E-12 76.4 6.3 122 60-190 36-179 (324)
41 2qp9_X Vacuolar protein sortin 98.5 4.9E-07 1.7E-11 74.9 9.0 150 24-190 50-230 (355)
42 3d8b_A Fidgetin-like protein 1 98.5 2.3E-07 7.9E-12 76.9 6.8 154 25-190 84-264 (357)
43 1qvr_A CLPB protein; coiled co 98.5 2.7E-07 9.2E-12 84.7 7.8 149 23-188 168-343 (854)
44 4fcw_A Chaperone protein CLPB; 98.4 4.2E-07 1.4E-11 73.3 7.5 153 26-189 18-228 (311)
45 3cf0_A Transitional endoplasmi 98.4 7.2E-07 2.5E-11 72.2 8.7 124 60-190 48-199 (301)
46 1r6b_X CLPA protein; AAA+, N-t 98.4 6E-07 2.1E-11 81.3 8.7 150 24-189 185-361 (758)
47 2gno_A DNA polymerase III, gam 98.4 2.1E-06 7.1E-11 69.8 10.2 137 42-190 6-152 (305)
48 2w58_A DNAI, primosome compone 98.4 3.8E-07 1.3E-11 69.1 5.0 41 42-85 38-78 (202)
49 1ofh_A ATP-dependent HSL prote 98.4 9.8E-07 3.3E-11 70.9 7.6 154 25-188 15-213 (310)
50 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.1E-06 7.1E-11 70.2 9.5 131 60-190 44-192 (322)
51 3b9p_A CG5977-PA, isoform A; A 98.3 7.4E-07 2.5E-11 71.6 6.4 154 24-189 20-201 (297)
52 3vfd_A Spastin; ATPase, microt 98.3 1.1E-06 3.6E-11 73.7 7.4 158 25-190 115-295 (389)
53 3co5_A Putative two-component 98.3 3.2E-07 1.1E-11 66.1 3.5 109 25-158 4-114 (143)
54 3hu3_A Transitional endoplasmi 98.3 7E-07 2.4E-11 77.1 5.7 151 25-190 204-385 (489)
55 3pxg_A Negative regulator of g 98.3 4.9E-07 1.7E-11 77.7 4.3 143 24-190 179-338 (468)
56 2r62_A Cell division protease 98.2 1.7E-07 5.7E-12 74.3 0.7 122 62-190 45-196 (268)
57 2bjv_A PSP operon transcriptio 98.2 6.3E-07 2.2E-11 70.9 4.1 47 26-85 7-53 (265)
58 2r44_A Uncharacterized protein 98.2 1.1E-05 3.7E-10 65.8 10.7 152 16-190 17-198 (331)
59 2zan_A Vacuolar protein sortin 98.2 8.6E-06 2.9E-10 69.4 9.8 151 25-190 134-314 (444)
60 3pxi_A Negative regulator of g 98.1 2.5E-06 8.6E-11 77.3 6.3 143 24-190 179-338 (758)
61 4b4t_J 26S protease regulatory 98.1 5.1E-06 1.7E-10 69.8 7.5 128 60-190 181-332 (405)
62 1ojl_A Transcriptional regulat 98.1 2.6E-06 8.9E-11 69.1 5.6 46 26-84 3-48 (304)
63 1lv7_A FTSH; alpha/beta domain 98.1 4.9E-06 1.7E-10 65.4 6.6 128 61-190 45-195 (257)
64 3t15_A Ribulose bisphosphate c 98.1 6.8E-06 2.3E-10 66.2 7.2 28 59-86 34-61 (293)
65 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 2.5E-05 8.5E-10 67.5 10.0 55 11-85 11-65 (500)
66 4b4t_L 26S protease subunit RP 98.0 1.4E-05 4.9E-10 67.8 8.2 129 59-190 213-365 (437)
67 3cf2_A TER ATPase, transitiona 98.0 2.1E-05 7.2E-10 71.5 9.7 125 59-190 236-385 (806)
68 4b4t_H 26S protease regulatory 98.0 7.4E-06 2.5E-10 69.8 6.3 128 60-190 242-393 (467)
69 2ce7_A Cell division protein F 98.0 6.4E-06 2.2E-10 70.8 5.8 126 62-190 50-199 (476)
70 3pxi_A Negative regulator of g 98.0 8.5E-06 2.9E-10 73.8 6.8 149 26-189 492-674 (758)
71 2kjq_A DNAA-related protein; s 98.0 1.6E-06 5.4E-11 63.0 0.9 86 62-159 37-124 (149)
72 1r6b_X CLPA protein; AAA+, N-t 97.9 6.3E-06 2.1E-10 74.7 4.9 156 26-189 459-665 (758)
73 4b4t_K 26S protease regulatory 97.9 1E-05 3.5E-10 68.5 5.6 71 60-130 205-275 (428)
74 1in4_A RUVB, holliday junction 97.8 5.5E-05 1.9E-09 61.9 8.3 149 24-190 24-193 (334)
75 4b4t_M 26S protease regulatory 97.8 6.6E-06 2.2E-10 69.8 2.7 128 59-189 213-364 (434)
76 1qvr_A CLPB protein; coiled co 97.8 3.6E-05 1.2E-09 70.7 7.7 123 26-159 559-710 (854)
77 2qgz_A Helicase loader, putati 97.8 1.2E-05 4.1E-10 65.3 3.7 41 42-86 137-177 (308)
78 1um8_A ATP-dependent CLP prote 97.8 6.3E-05 2.2E-09 62.4 7.8 25 61-85 72-96 (376)
79 3m6a_A ATP-dependent protease 97.7 8.4E-05 2.9E-09 64.9 7.9 129 60-189 107-265 (543)
80 4b4t_I 26S protease regulatory 97.7 3.9E-05 1.3E-09 64.8 4.9 129 59-190 214-366 (437)
81 1ypw_A Transitional endoplasmi 97.6 0.0001 3.6E-09 67.2 7.6 155 25-190 204-385 (806)
82 2x8a_A Nuclear valosin-contain 97.6 8.6E-05 2.9E-09 59.2 5.7 123 64-190 47-191 (274)
83 1iy2_A ATP-dependent metallopr 97.6 0.00019 6.7E-09 56.9 7.3 120 64-190 76-223 (278)
84 2b8t_A Thymidine kinase; deoxy 97.5 0.00012 4.3E-09 56.6 5.6 96 61-159 12-125 (223)
85 1ixz_A ATP-dependent metallopr 97.5 0.00013 4.5E-09 57.0 5.8 120 64-190 52-199 (254)
86 2c9o_A RUVB-like 1; hexameric 97.5 1.9E-05 6.6E-10 67.4 1.0 92 25-130 37-136 (456)
87 3sr0_A Adenylate kinase; phosp 97.5 0.00012 4.1E-09 55.9 5.0 76 63-143 2-96 (206)
88 2dhr_A FTSH; AAA+ protein, hex 97.5 0.0002 6.8E-09 61.9 6.8 125 62-190 65-214 (499)
89 1g5t_A COB(I)alamin adenosyltr 97.5 7E-05 2.4E-09 56.7 3.3 50 112-161 111-164 (196)
90 2p5t_B PEZT; postsegregational 97.4 0.00016 5.3E-09 56.8 5.3 46 38-85 11-56 (253)
91 1gvn_B Zeta; postsegregational 97.4 0.00021 7.3E-09 57.3 6.0 42 41-84 15-56 (287)
92 3umf_A Adenylate kinase; rossm 97.4 0.00016 5.6E-09 55.7 5.0 28 59-86 27-54 (217)
93 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00014 4.9E-09 59.2 4.4 69 62-131 124-193 (331)
94 1rz3_A Hypothetical protein rb 97.4 0.00018 6.1E-09 54.4 4.6 40 41-84 6-45 (201)
95 3c8u_A Fructokinase; YP_612366 97.4 0.00018 6.1E-09 54.7 4.6 40 42-86 8-47 (208)
96 3e70_C DPA, signal recognition 97.3 0.0014 4.9E-08 53.5 9.8 27 59-85 127-153 (328)
97 3jvv_A Twitching mobility prot 97.3 0.00043 1.5E-08 57.3 6.5 98 62-164 124-235 (356)
98 2orw_A Thymidine kinase; TMTK, 97.2 6.8E-05 2.3E-09 56.2 0.7 94 62-159 4-112 (184)
99 3lw7_A Adenylate kinase relate 97.2 0.00018 6.1E-09 52.3 3.0 20 62-81 2-21 (179)
100 1odf_A YGR205W, hypothetical 3 97.2 0.00057 1.9E-08 54.9 6.0 28 59-86 29-56 (290)
101 1qhx_A CPT, protein (chloramph 97.2 0.00018 6E-09 52.9 2.8 23 62-84 4-26 (178)
102 1ly1_A Polynucleotide kinase; 97.2 0.00021 7.1E-09 52.5 3.1 22 62-83 3-24 (181)
103 3cf2_A TER ATPase, transitiona 97.2 0.00056 1.9E-08 62.2 6.4 125 59-190 509-661 (806)
104 3kb2_A SPBC2 prophage-derived 97.1 0.00022 7.4E-09 52.0 2.8 23 62-84 2-24 (173)
105 1zp6_A Hypothetical protein AT 97.1 0.0003 1E-08 52.3 3.6 25 61-85 9-33 (191)
106 3tui_C Methionine import ATP-b 97.1 0.0014 4.6E-08 54.4 7.5 53 113-165 174-229 (366)
107 3hws_A ATP-dependent CLP prote 97.1 0.00034 1.2E-08 57.7 3.6 51 27-85 17-75 (363)
108 2ixe_A Antigen peptide transpo 97.1 0.0024 8.2E-08 50.7 8.4 51 115-165 169-222 (271)
109 3asz_A Uridine kinase; cytidin 97.0 0.00037 1.3E-08 52.7 3.5 26 60-85 5-30 (211)
110 3vaa_A Shikimate kinase, SK; s 97.0 0.00035 1.2E-08 52.6 3.2 24 61-84 25-48 (199)
111 1u0j_A DNA replication protein 97.0 0.0027 9.1E-08 50.3 8.3 25 60-84 103-127 (267)
112 2rhm_A Putative kinase; P-loop 97.0 0.00043 1.5E-08 51.4 3.6 25 60-84 4-28 (193)
113 1kgd_A CASK, peripheral plasma 97.0 0.0004 1.4E-08 51.5 3.4 24 61-84 5-28 (180)
114 1knq_A Gluconate kinase; ALFA/ 97.0 0.00054 1.8E-08 50.2 4.0 25 60-84 7-31 (175)
115 1nks_A Adenylate kinase; therm 97.0 0.0003 1E-08 52.1 2.6 25 62-86 2-26 (194)
116 3uie_A Adenylyl-sulfate kinase 97.0 0.00047 1.6E-08 51.9 3.7 25 61-85 25-49 (200)
117 3trf_A Shikimate kinase, SK; a 97.0 0.00035 1.2E-08 51.7 2.9 25 61-85 5-29 (185)
118 4eun_A Thermoresistant glucoki 97.0 0.00042 1.4E-08 52.2 3.2 25 60-84 28-52 (200)
119 1kag_A SKI, shikimate kinase I 97.0 0.00033 1.1E-08 51.2 2.5 23 62-84 5-27 (173)
120 3tau_A Guanylate kinase, GMP k 97.0 0.00045 1.5E-08 52.5 3.3 25 61-85 8-32 (208)
121 1qf9_A UMP/CMP kinase, protein 97.0 0.00057 1.9E-08 50.6 3.8 25 60-84 5-29 (194)
122 1ukz_A Uridylate kinase; trans 97.0 0.00054 1.9E-08 51.5 3.6 28 58-85 12-39 (203)
123 3nh6_A ATP-binding cassette SU 97.0 0.00068 2.3E-08 54.9 4.4 24 62-85 81-104 (306)
124 3t61_A Gluconokinase; PSI-biol 97.0 0.00035 1.2E-08 52.6 2.6 24 61-84 18-41 (202)
125 1uf9_A TT1252 protein; P-loop, 96.9 0.00056 1.9E-08 51.2 3.4 25 60-84 7-31 (203)
126 1kht_A Adenylate kinase; phosp 96.9 0.00045 1.5E-08 51.1 2.8 24 62-85 4-27 (192)
127 1tev_A UMP-CMP kinase; ploop, 96.9 0.00051 1.7E-08 50.9 3.1 24 61-84 3-26 (196)
128 2cdn_A Adenylate kinase; phosp 96.9 0.00058 2E-08 51.3 3.4 26 59-84 18-43 (201)
129 3fvq_A Fe(3+) IONS import ATP- 96.9 0.0028 9.5E-08 52.4 7.8 23 62-84 31-53 (359)
130 2c95_A Adenylate kinase 1; tra 96.9 0.00044 1.5E-08 51.5 2.6 25 61-85 9-33 (196)
131 1y63_A LMAJ004144AAA protein; 96.9 0.00062 2.1E-08 50.6 3.4 25 60-84 9-33 (184)
132 2ze6_A Isopentenyl transferase 96.9 0.00043 1.5E-08 54.3 2.7 24 62-85 2-25 (253)
133 1z47_A CYSA, putative ABC-tran 96.9 0.0022 7.6E-08 52.9 7.0 23 62-84 42-64 (355)
134 3iij_A Coilin-interacting nucl 96.9 0.00038 1.3E-08 51.3 2.2 25 61-85 11-35 (180)
135 1jr3_D DNA polymerase III, del 96.9 0.0043 1.5E-07 50.5 8.5 126 61-189 18-154 (343)
136 3rlf_A Maltose/maltodextrin im 96.9 0.0014 4.8E-08 54.6 5.6 24 62-85 30-53 (381)
137 3tr0_A Guanylate kinase, GMP k 96.9 0.00067 2.3E-08 50.9 3.4 23 62-84 8-30 (205)
138 2qt1_A Nicotinamide riboside k 96.8 0.00082 2.8E-08 50.7 3.8 26 60-85 20-45 (207)
139 2hf9_A Probable hydrogenase ni 96.8 0.0014 4.7E-08 49.9 5.1 25 60-84 37-61 (226)
140 2j41_A Guanylate kinase; GMP, 96.8 0.00071 2.4E-08 50.8 3.4 25 61-85 6-30 (207)
141 3fwy_A Light-independent proto 96.8 0.00069 2.4E-08 55.0 3.5 24 59-82 46-69 (314)
142 2yyz_A Sugar ABC transporter, 96.8 0.0024 8.1E-08 52.8 6.8 24 62-85 30-53 (359)
143 4gp7_A Metallophosphoesterase; 96.8 0.00065 2.2E-08 50.0 3.1 21 61-81 9-29 (171)
144 2qor_A Guanylate kinase; phosp 96.8 0.00047 1.6E-08 52.1 2.4 26 60-85 11-36 (204)
145 1uj2_A Uridine-cytidine kinase 96.8 0.00066 2.3E-08 53.1 3.2 27 59-85 20-46 (252)
146 1via_A Shikimate kinase; struc 96.8 0.00039 1.3E-08 51.1 1.8 24 62-85 5-28 (175)
147 2bdt_A BH3686; alpha-beta prot 96.8 0.00074 2.5E-08 50.2 3.4 22 62-83 3-24 (189)
148 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00073 2.5E-08 53.2 3.5 24 61-84 4-27 (260)
149 2plr_A DTMP kinase, probable t 96.8 0.00058 2E-08 51.4 2.8 24 62-85 5-28 (213)
150 3a00_A Guanylate kinase, GMP k 96.8 0.00057 1.9E-08 50.9 2.6 23 62-84 2-24 (186)
151 2bwj_A Adenylate kinase 5; pho 96.8 0.00064 2.2E-08 50.7 2.8 24 62-85 13-36 (199)
152 2it1_A 362AA long hypothetical 96.8 0.0024 8.4E-08 52.8 6.4 23 62-84 30-52 (362)
153 2jaq_A Deoxyguanosine kinase; 96.8 0.00067 2.3E-08 50.7 2.8 23 63-85 2-24 (205)
154 2iyv_A Shikimate kinase, SK; t 96.8 0.00049 1.7E-08 50.9 2.0 24 62-85 3-26 (184)
155 2px0_A Flagellar biosynthesis 96.8 0.0035 1.2E-07 50.4 7.2 27 60-86 104-130 (296)
156 2vli_A Antibiotic resistance p 96.8 0.00045 1.6E-08 50.9 1.7 25 60-84 4-28 (183)
157 2yvu_A Probable adenylyl-sulfa 96.7 0.0011 3.9E-08 49.1 3.9 27 60-86 12-38 (186)
158 3cm0_A Adenylate kinase; ATP-b 96.7 0.00099 3.4E-08 49.2 3.6 23 61-83 4-26 (186)
159 1v43_A Sugar-binding transport 96.7 0.0027 9.1E-08 52.8 6.5 23 62-84 38-60 (372)
160 3kl4_A SRP54, signal recogniti 96.7 0.013 4.5E-07 49.6 10.8 26 60-85 96-121 (433)
161 1zuh_A Shikimate kinase; alpha 96.7 0.00076 2.6E-08 49.1 2.8 26 60-85 6-31 (168)
162 2bbw_A Adenylate kinase 4, AK4 96.7 0.00085 2.9E-08 52.2 3.2 22 61-82 27-48 (246)
163 1aky_A Adenylate kinase; ATP:A 96.7 0.00067 2.3E-08 51.8 2.6 25 61-85 4-28 (220)
164 1cke_A CK, MSSA, protein (cyti 96.7 0.00085 2.9E-08 51.2 3.1 24 62-85 6-29 (227)
165 2ewv_A Twitching motility prot 96.7 0.0013 4.6E-08 54.6 4.5 97 61-162 136-246 (372)
166 3tqc_A Pantothenate kinase; bi 96.7 0.0013 4.4E-08 53.6 4.3 39 42-83 76-114 (321)
167 1jjv_A Dephospho-COA kinase; P 96.7 0.001 3.4E-08 50.2 3.4 22 62-83 3-24 (206)
168 1ypw_A Transitional endoplasmi 96.7 8.5E-05 2.9E-09 67.8 -3.1 131 60-190 510-661 (806)
169 1e6c_A Shikimate kinase; phosp 96.7 0.00065 2.2E-08 49.5 2.2 24 62-85 3-26 (173)
170 2if2_A Dephospho-COA kinase; a 96.7 0.00092 3.1E-08 50.2 3.1 22 62-83 2-23 (204)
171 1nn5_A Similar to deoxythymidy 96.7 0.00092 3.1E-08 50.4 3.1 24 61-84 9-32 (215)
172 2wwf_A Thymidilate kinase, put 96.7 0.001 3.4E-08 50.2 3.2 26 60-85 9-34 (212)
173 3tlx_A Adenylate kinase 2; str 96.7 0.0013 4.4E-08 51.2 3.9 26 60-85 28-53 (243)
174 1ye8_A Protein THEP1, hypothet 96.7 0.001 3.4E-08 49.5 3.1 23 63-85 2-24 (178)
175 3hr8_A Protein RECA; alpha and 96.7 0.002 6.8E-08 53.2 5.1 72 60-131 60-150 (356)
176 2wsm_A Hydrogenase expression/ 96.7 0.0017 5.9E-08 49.2 4.5 25 60-84 29-53 (221)
177 3ney_A 55 kDa erythrocyte memb 96.7 0.0013 4.3E-08 49.9 3.6 25 60-84 18-42 (197)
178 1lvg_A Guanylate kinase, GMP k 96.6 0.00084 2.9E-08 50.6 2.5 22 62-83 5-26 (198)
179 2pbr_A DTMP kinase, thymidylat 96.6 0.00099 3.4E-08 49.3 2.9 23 63-85 2-24 (195)
180 2v54_A DTMP kinase, thymidylat 96.6 0.0011 3.9E-08 49.6 3.2 24 62-85 5-28 (204)
181 1zd8_A GTP:AMP phosphotransfer 96.6 0.0011 3.7E-08 50.9 3.1 24 61-84 7-30 (227)
182 2pt5_A Shikimate kinase, SK; a 96.6 0.001 3.5E-08 48.2 2.8 23 63-85 2-24 (168)
183 1g8p_A Magnesium-chelatase 38 96.6 0.00047 1.6E-08 56.1 1.0 46 25-85 24-69 (350)
184 3fb4_A Adenylate kinase; psych 96.6 0.00088 3E-08 50.8 2.5 23 63-85 2-24 (216)
185 3be4_A Adenylate kinase; malar 96.6 0.00077 2.6E-08 51.4 2.1 25 61-85 5-29 (217)
186 1zak_A Adenylate kinase; ATP:A 96.6 0.00076 2.6E-08 51.5 2.1 25 61-85 5-29 (222)
187 1ex7_A Guanylate kinase; subst 96.6 0.00093 3.2E-08 50.1 2.5 23 62-84 2-24 (186)
188 2f6r_A COA synthase, bifunctio 96.6 0.0014 4.9E-08 52.2 3.7 24 59-82 73-96 (281)
189 3aez_A Pantothenate kinase; tr 96.6 0.0015 5E-08 53.0 3.8 26 59-84 88-113 (312)
190 1xjc_A MOBB protein homolog; s 96.6 0.00097 3.3E-08 49.3 2.5 27 60-86 3-29 (169)
191 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0028 9.6E-08 52.3 5.3 30 60-89 23-52 (359)
192 1gtv_A TMK, thymidylate kinase 96.5 0.00054 1.9E-08 51.8 0.9 23 63-85 2-24 (214)
193 2pez_A Bifunctional 3'-phospho 96.5 0.0016 5.6E-08 47.9 3.5 26 60-85 4-29 (179)
194 2jeo_A Uridine-cytidine kinase 96.5 0.0016 5.5E-08 50.6 3.6 25 60-84 24-48 (245)
195 1znw_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 49.6 3.2 23 61-83 20-42 (207)
196 3dl0_A Adenylate kinase; phosp 96.5 0.001 3.4E-08 50.5 2.4 23 63-85 2-24 (216)
197 3upu_A ATP-dependent DNA helic 96.5 0.0077 2.6E-07 51.2 8.0 24 62-85 46-69 (459)
198 1zu4_A FTSY; GTPase, signal re 96.5 0.0041 1.4E-07 50.6 6.0 28 59-86 103-130 (320)
199 1rj9_A FTSY, signal recognitio 96.5 0.0017 5.7E-08 52.5 3.6 24 60-83 101-124 (304)
200 2z0h_A DTMP kinase, thymidylat 96.5 0.0014 4.7E-08 48.7 2.9 23 63-85 2-24 (197)
201 3b5x_A Lipid A export ATP-bind 96.5 0.0074 2.5E-07 53.0 7.8 24 62-85 370-393 (582)
202 4e22_A Cytidylate kinase; P-lo 96.5 0.0017 5.8E-08 50.8 3.3 24 61-84 27-50 (252)
203 3zvl_A Bifunctional polynucleo 96.5 0.0018 6.1E-08 54.6 3.7 63 59-130 256-318 (416)
204 3p32_A Probable GTPase RV1496/ 96.5 0.004 1.4E-07 51.2 5.7 38 42-84 65-102 (355)
205 4a74_A DNA repair and recombin 96.5 0.0018 6.2E-08 49.3 3.3 23 61-83 25-47 (231)
206 1m7g_A Adenylylsulfate kinase; 96.5 0.0018 6.3E-08 49.0 3.4 26 61-86 25-50 (211)
207 1z6g_A Guanylate kinase; struc 96.4 0.0014 4.8E-08 50.1 2.7 22 62-83 24-45 (218)
208 1vht_A Dephospho-COA kinase; s 96.4 0.0023 7.7E-08 48.7 3.6 23 61-83 4-26 (218)
209 2ehv_A Hypothetical protein PH 96.4 0.0018 6.3E-08 49.9 3.1 22 61-82 30-51 (251)
210 2og2_A Putative signal recogni 96.4 0.015 5E-07 48.1 8.7 27 59-85 155-181 (359)
211 3a8t_A Adenylate isopentenyltr 96.4 0.0023 8E-08 52.4 3.8 26 61-86 40-65 (339)
212 2grj_A Dephospho-COA kinase; T 96.4 0.0023 7.7E-08 48.2 3.5 25 60-84 11-35 (192)
213 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0024 8.3E-08 52.1 3.9 97 62-163 172-278 (330)
214 3e1s_A Exodeoxyribonuclease V, 96.4 0.0046 1.6E-07 54.3 5.9 24 62-85 205-228 (574)
215 1s96_A Guanylate kinase, GMP k 96.4 0.002 6.9E-08 49.5 3.2 25 61-85 16-40 (219)
216 1ak2_A Adenylate kinase isoenz 96.4 0.0017 5.7E-08 50.1 2.7 26 60-85 15-40 (233)
217 1xp8_A RECA protein, recombina 96.4 0.0048 1.6E-07 51.1 5.6 71 61-131 74-163 (366)
218 2cvh_A DNA repair and recombin 96.4 0.0033 1.1E-07 47.4 4.3 23 61-83 20-42 (220)
219 2ged_A SR-beta, signal recogni 96.4 0.003 1E-07 46.5 4.0 27 59-85 46-72 (193)
220 1sq5_A Pantothenate kinase; P- 96.3 0.0025 8.6E-08 51.4 3.8 25 60-84 79-103 (308)
221 3k1j_A LON protease, ATP-depen 96.3 0.0024 8.2E-08 56.4 3.8 43 26-85 42-84 (604)
222 3qf4_A ABC transporter, ATP-bi 96.3 0.0038 1.3E-07 54.9 5.0 24 62-85 370-393 (587)
223 1yrb_A ATP(GTP)binding protein 96.3 0.003 1E-07 49.2 3.9 25 59-83 12-36 (262)
224 2f1r_A Molybdopterin-guanine d 96.3 0.0016 5.4E-08 48.2 2.2 26 62-87 3-28 (171)
225 1tue_A Replication protein E1; 96.3 0.0035 1.2E-07 47.8 4.1 25 61-85 58-82 (212)
226 1ltq_A Polynucleotide kinase; 96.3 0.0021 7.2E-08 51.3 3.1 22 62-83 3-24 (301)
227 1e4v_A Adenylate kinase; trans 96.3 0.0017 6E-08 49.2 2.5 23 63-85 2-24 (214)
228 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0068 2.3E-07 51.8 6.2 25 62-86 152-176 (473)
229 3dm5_A SRP54, signal recogniti 96.3 0.0078 2.7E-07 51.1 6.5 24 60-83 99-122 (443)
230 3lnc_A Guanylate kinase, GMP k 96.3 0.0015 5E-08 50.3 1.9 21 62-82 28-48 (231)
231 2xb4_A Adenylate kinase; ATP-b 96.3 0.0018 6.2E-08 49.6 2.4 22 63-84 2-23 (223)
232 3ake_A Cytidylate kinase; CMP 96.3 0.0025 8.6E-08 47.7 3.2 23 63-85 4-26 (208)
233 1htw_A HI0065; nucleotide-bind 96.3 0.0032 1.1E-07 45.8 3.6 23 62-84 34-56 (158)
234 3r20_A Cytidylate kinase; stru 96.2 0.0019 6.6E-08 50.1 2.4 25 61-85 9-33 (233)
235 2xxa_A Signal recognition part 96.2 0.0078 2.7E-07 51.0 6.4 44 42-85 79-124 (433)
236 3gmt_A Adenylate kinase; ssgci 96.2 0.0025 8.4E-08 49.4 3.0 25 61-85 8-32 (230)
237 3exa_A TRNA delta(2)-isopenten 96.2 0.0028 9.5E-08 51.4 3.4 25 61-85 3-27 (322)
238 1vma_A Cell division protein F 96.2 0.0035 1.2E-07 50.7 3.9 27 59-85 102-128 (306)
239 3b9q_A Chloroplast SRP recepto 96.2 0.0031 1.1E-07 50.8 3.6 27 59-85 98-124 (302)
240 3bh0_A DNAB-like replicative h 96.2 0.0076 2.6E-07 48.7 5.9 24 61-84 68-91 (315)
241 3d3q_A TRNA delta(2)-isopenten 96.2 0.0026 9E-08 52.1 3.1 24 62-85 8-31 (340)
242 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0028 9.7E-08 48.1 3.1 24 62-85 24-47 (235)
243 2wji_A Ferrous iron transport 96.2 0.0043 1.5E-07 44.8 3.8 23 62-84 4-26 (165)
244 1xx6_A Thymidine kinase; NESG, 96.1 0.0034 1.2E-07 47.2 3.3 93 61-160 8-118 (191)
245 2wjg_A FEOB, ferrous iron tran 96.1 0.0054 1.8E-07 44.9 4.4 25 60-84 6-30 (188)
246 2onk_A Molybdate/tungstate ABC 96.1 0.0033 1.1E-07 49.0 3.3 24 62-85 25-48 (240)
247 1svm_A Large T antigen; AAA+ f 96.1 0.0065 2.2E-07 50.5 5.3 24 60-83 168-191 (377)
248 3j16_B RLI1P; ribosome recycli 96.1 0.014 4.9E-07 51.5 7.7 54 113-166 478-534 (608)
249 1g41_A Heat shock protein HSLU 96.1 0.0037 1.3E-07 53.1 3.8 51 26-84 16-73 (444)
250 3tif_A Uncharacterized ABC tra 96.1 0.003 1E-07 49.0 3.1 22 62-83 32-53 (235)
251 2zej_A Dardarin, leucine-rich 96.1 0.003 1E-07 46.5 2.9 22 63-84 4-25 (184)
252 1zj6_A ADP-ribosylation factor 96.1 0.0079 2.7E-07 44.1 5.2 25 61-85 16-40 (187)
253 2i3b_A HCR-ntpase, human cance 96.1 0.0026 9E-08 47.7 2.6 24 63-86 3-26 (189)
254 3foz_A TRNA delta(2)-isopenten 96.1 0.0036 1.2E-07 50.7 3.5 26 60-85 9-34 (316)
255 3end_A Light-independent proto 96.1 0.0036 1.2E-07 50.1 3.5 27 59-85 39-65 (307)
256 1n0w_A DNA repair protein RAD5 96.1 0.0033 1.1E-07 48.2 3.1 23 61-83 24-46 (243)
257 2pcj_A ABC transporter, lipopr 96.1 0.0031 1.1E-07 48.5 3.0 22 62-83 31-52 (224)
258 3crm_A TRNA delta(2)-isopenten 96.1 0.0031 1.1E-07 51.4 3.0 24 62-85 6-29 (323)
259 1np6_A Molybdopterin-guanine d 96.1 0.0035 1.2E-07 46.4 3.1 25 61-85 6-30 (174)
260 3nwj_A ATSK2; P loop, shikimat 96.1 0.0026 8.9E-08 49.9 2.5 23 62-84 49-71 (250)
261 2dyk_A GTP-binding protein; GT 96.1 0.004 1.4E-07 44.2 3.2 24 62-85 2-25 (161)
262 3qf4_B Uncharacterized ABC tra 96.1 0.0072 2.5E-07 53.3 5.4 25 61-85 381-405 (598)
263 4a82_A Cystic fibrosis transme 96.0 0.0033 1.1E-07 55.2 3.2 24 62-85 368-391 (578)
264 2qmh_A HPR kinase/phosphorylas 96.0 0.0038 1.3E-07 47.3 3.1 24 62-85 35-58 (205)
265 2j37_W Signal recognition part 96.0 0.011 3.7E-07 51.1 6.3 25 59-83 99-123 (504)
266 1a7j_A Phosphoribulokinase; tr 96.0 0.0015 5.2E-08 52.3 0.9 25 60-84 4-28 (290)
267 2cbz_A Multidrug resistance-as 96.0 0.0038 1.3E-07 48.5 3.1 24 62-85 32-55 (237)
268 1oix_A RAS-related protein RAB 96.0 0.0046 1.6E-07 45.9 3.5 26 60-85 28-53 (191)
269 1fzq_A ADP-ribosylation factor 96.0 0.0071 2.4E-07 44.3 4.4 25 60-84 15-39 (181)
270 1b0u_A Histidine permease; ABC 96.0 0.0039 1.3E-07 49.2 3.0 21 62-82 33-53 (262)
271 3gfo_A Cobalt import ATP-bindi 96.0 0.0039 1.3E-07 49.6 3.0 22 62-83 35-56 (275)
272 3ice_A Transcription terminati 96.0 0.0017 5.7E-08 54.3 0.8 23 62-84 175-197 (422)
273 2yhs_A FTSY, cell division pro 96.0 0.014 4.7E-07 50.2 6.5 27 59-85 291-317 (503)
274 1svi_A GTP-binding protein YSX 96.0 0.0058 2E-07 45.0 3.8 26 60-85 22-47 (195)
275 2lkc_A Translation initiation 95.9 0.0061 2.1E-07 44.1 3.8 25 60-84 7-31 (178)
276 1nlf_A Regulatory protein REPA 95.9 0.0041 1.4E-07 49.2 3.0 22 62-83 31-52 (279)
277 4eaq_A DTMP kinase, thymidylat 95.9 0.0048 1.6E-07 47.6 3.3 27 60-86 25-51 (229)
278 4g1u_C Hemin import ATP-bindin 95.9 0.0042 1.4E-07 49.2 3.0 23 62-84 38-60 (266)
279 1cr0_A DNA primase/helicase; R 95.9 0.0043 1.5E-07 49.4 3.1 23 62-84 36-58 (296)
280 1q3t_A Cytidylate kinase; nucl 95.9 0.0049 1.7E-07 47.5 3.4 26 59-84 14-39 (236)
281 1g6h_A High-affinity branched- 95.9 0.0043 1.5E-07 48.8 3.1 22 62-83 34-55 (257)
282 2f9l_A RAB11B, member RAS onco 95.9 0.004 1.4E-07 46.4 2.8 24 61-84 5-28 (199)
283 1ji0_A ABC transporter; ATP bi 95.9 0.0044 1.5E-07 48.2 3.1 23 62-84 33-55 (240)
284 2ce2_X GTPase HRAS; signaling 95.9 0.0043 1.5E-07 44.0 2.8 22 63-84 5-26 (166)
285 2vp4_A Deoxynucleoside kinase; 95.9 0.0046 1.6E-07 47.6 3.1 26 59-84 18-43 (230)
286 3f9v_A Minichromosome maintena 95.9 0.0021 7.1E-08 56.7 1.2 54 24-85 294-351 (595)
287 2nzj_A GTP-binding protein REM 95.9 0.0071 2.4E-07 43.5 4.0 25 61-85 4-28 (175)
288 2ocp_A DGK, deoxyguanosine kin 95.9 0.0048 1.7E-07 47.7 3.2 25 61-85 2-26 (241)
289 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0048 1.6E-07 48.3 3.2 23 62-84 30-52 (250)
290 3b85_A Phosphate starvation-in 95.9 0.0032 1.1E-07 47.9 2.1 23 62-84 23-45 (208)
291 1mv5_A LMRA, multidrug resista 95.9 0.005 1.7E-07 47.9 3.2 24 62-85 29-52 (243)
292 2olj_A Amino acid ABC transpor 95.9 0.0046 1.6E-07 48.8 3.0 22 62-83 51-72 (263)
293 1z2a_A RAS-related protein RAB 95.9 0.006 2.1E-07 43.5 3.5 25 60-84 4-28 (168)
294 3io5_A Recombination and repai 95.9 0.013 4.5E-07 47.6 5.7 70 63-132 30-123 (333)
295 2ff7_A Alpha-hemolysin translo 95.9 0.0048 1.6E-07 48.2 3.1 23 62-84 36-58 (247)
296 2dr3_A UPF0273 protein PH0284; 95.8 0.0049 1.7E-07 47.3 3.1 22 62-83 24-45 (247)
297 3pqc_A Probable GTP-binding pr 95.8 0.0067 2.3E-07 44.5 3.7 26 60-85 22-47 (195)
298 2pze_A Cystic fibrosis transme 95.8 0.0049 1.7E-07 47.6 3.0 53 113-165 141-195 (229)
299 4f4c_A Multidrug resistance pr 95.8 0.024 8.1E-07 54.5 8.3 24 62-85 445-468 (1321)
300 1cp2_A CP2, nitrogenase iron p 95.8 0.0055 1.9E-07 48.0 3.3 24 62-85 2-25 (269)
301 2zu0_C Probable ATP-dependent 95.8 0.0051 1.7E-07 48.6 3.1 23 62-84 47-69 (267)
302 2fn4_A P23, RAS-related protei 95.8 0.0072 2.5E-07 43.7 3.8 26 59-84 7-32 (181)
303 1p5z_B DCK, deoxycytidine kina 95.8 0.0037 1.3E-07 49.0 2.3 26 60-85 23-48 (263)
304 1moz_A ARL1, ADP-ribosylation 95.8 0.0067 2.3E-07 44.1 3.6 26 60-85 17-42 (183)
305 2ghi_A Transport protein; mult 95.8 0.005 1.7E-07 48.5 3.1 23 62-84 47-69 (260)
306 1sgw_A Putative ABC transporte 95.8 0.0041 1.4E-07 47.6 2.5 23 62-84 36-58 (214)
307 1vpl_A ABC transporter, ATP-bi 95.8 0.0051 1.8E-07 48.4 3.0 23 62-84 42-64 (256)
308 2afh_E Nitrogenase iron protei 95.8 0.006 2E-07 48.4 3.5 25 61-85 2-26 (289)
309 3q72_A GTP-binding protein RAD 95.8 0.0052 1.8E-07 43.9 2.9 23 63-85 4-26 (166)
310 2eyu_A Twitching motility prot 95.8 0.0066 2.3E-07 47.8 3.6 97 62-163 26-136 (261)
311 3thx_A DNA mismatch repair pro 95.8 0.0099 3.4E-07 55.0 5.2 106 60-166 661-791 (934)
312 2j9r_A Thymidine kinase; TK1, 95.7 0.017 5.9E-07 44.1 5.7 92 61-159 28-137 (214)
313 2p67_A LAO/AO transport system 95.7 0.0092 3.2E-07 48.8 4.5 24 60-83 55-78 (341)
314 2yz2_A Putative ABC transporte 95.7 0.0056 1.9E-07 48.4 3.1 23 62-84 34-56 (266)
315 1nrj_B SR-beta, signal recogni 95.7 0.0064 2.2E-07 45.8 3.3 26 60-85 11-36 (218)
316 2qi9_C Vitamin B12 import ATP- 95.7 0.0057 1.9E-07 47.9 3.0 23 62-84 27-49 (249)
317 3t5g_A GTP-binding protein RHE 95.7 0.006 2.1E-07 44.4 3.0 25 60-84 5-29 (181)
318 3con_A GTPase NRAS; structural 95.7 0.0054 1.9E-07 45.0 2.8 25 61-85 21-45 (190)
319 2ihy_A ABC transporter, ATP-bi 95.7 0.0057 1.9E-07 48.7 3.0 23 62-84 48-70 (279)
320 2gj8_A MNME, tRNA modification 95.7 0.0065 2.2E-07 44.3 3.1 24 62-85 5-28 (172)
321 2v9p_A Replication protein E1; 95.7 0.0064 2.2E-07 49.1 3.3 24 61-84 126-149 (305)
322 4f4c_A Multidrug resistance pr 95.7 0.021 7.3E-07 54.8 7.4 26 62-87 1106-1131(1321)
323 2erx_A GTP-binding protein DI- 95.7 0.0066 2.2E-07 43.4 3.1 23 62-84 4-26 (172)
324 2nq2_C Hypothetical ABC transp 95.7 0.0059 2E-07 47.9 3.0 24 62-85 32-55 (253)
325 1m7b_A RND3/RHOE small GTP-bin 95.7 0.0075 2.6E-07 44.2 3.4 25 60-84 6-30 (184)
326 1ls1_A Signal recognition part 95.7 0.0071 2.4E-07 48.5 3.5 27 60-86 97-123 (295)
327 4bas_A ADP-ribosylation factor 95.7 0.0078 2.7E-07 44.4 3.6 29 57-85 13-41 (199)
328 1u8z_A RAS-related protein RAL 95.7 0.0059 2E-07 43.4 2.8 25 61-85 4-28 (168)
329 2iwr_A Centaurin gamma 1; ANK 95.7 0.0082 2.8E-07 43.5 3.5 25 60-84 6-30 (178)
330 1ky3_A GTP-binding protein YPT 95.7 0.0079 2.7E-07 43.5 3.5 26 60-85 7-32 (182)
331 1j8m_F SRP54, signal recogniti 95.7 0.012 4.2E-07 47.2 4.8 25 61-85 98-122 (297)
332 2hxs_A RAB-26, RAS-related pro 95.6 0.01 3.5E-07 42.8 4.0 26 60-85 5-30 (178)
333 3def_A T7I23.11 protein; chlor 95.6 0.02 6.9E-07 44.8 6.0 26 60-85 35-60 (262)
334 1kao_A RAP2A; GTP-binding prot 95.6 0.0063 2.2E-07 43.2 2.8 23 62-84 4-26 (167)
335 3q85_A GTP-binding protein REM 95.6 0.01 3.4E-07 42.5 3.8 23 62-84 3-25 (169)
336 2cxx_A Probable GTP-binding pr 95.6 0.0071 2.4E-07 44.2 3.1 23 63-85 3-25 (190)
337 1c1y_A RAS-related protein RAP 95.6 0.0065 2.2E-07 43.3 2.8 23 62-84 4-26 (167)
338 2axn_A 6-phosphofructo-2-kinas 95.6 0.0068 2.3E-07 52.5 3.4 26 60-85 34-59 (520)
339 1h65_A Chloroplast outer envel 95.6 0.021 7.2E-07 44.8 6.0 26 60-85 38-63 (270)
340 1ek0_A Protein (GTP-binding pr 95.6 0.0066 2.2E-07 43.3 2.8 24 62-85 4-27 (170)
341 1z0j_A RAB-22, RAS-related pro 95.6 0.0067 2.3E-07 43.4 2.8 25 61-85 6-30 (170)
342 3sop_A Neuronal-specific septi 95.6 0.0072 2.5E-07 47.9 3.1 24 62-85 3-26 (270)
343 3eph_A TRNA isopentenyltransfe 95.6 0.0058 2E-07 51.2 2.6 24 62-85 3-26 (409)
344 1pzn_A RAD51, DNA repair and r 95.6 0.0077 2.6E-07 49.5 3.3 24 60-83 130-153 (349)
345 1f6b_A SAR1; gtpases, N-termin 95.6 0.0088 3E-07 44.6 3.4 24 62-85 26-49 (198)
346 3clv_A RAB5 protein, putative; 95.5 0.011 3.8E-07 43.4 3.9 25 60-84 6-30 (208)
347 2v3c_C SRP54, signal recogniti 95.5 0.0044 1.5E-07 52.5 1.8 27 60-86 98-124 (432)
348 3tw8_B RAS-related protein RAB 95.5 0.0094 3.2E-07 43.0 3.5 26 60-85 8-33 (181)
349 1ewq_A DNA mismatch repair pro 95.5 0.011 3.7E-07 53.7 4.4 102 62-165 577-703 (765)
350 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0073 2.5E-07 43.6 2.8 26 60-85 6-31 (177)
351 2qu8_A Putative nucleolar GTP- 95.5 0.011 3.7E-07 45.1 3.8 26 60-85 28-53 (228)
352 1r2q_A RAS-related protein RAB 95.5 0.0076 2.6E-07 43.0 2.8 24 61-84 6-29 (170)
353 3kta_A Chromosome segregation 95.5 0.0086 2.9E-07 43.9 3.1 22 62-83 27-48 (182)
354 1pui_A ENGB, probable GTP-bind 95.5 0.0067 2.3E-07 45.4 2.6 26 60-85 25-50 (210)
355 2pjz_A Hypothetical protein ST 95.5 0.0078 2.7E-07 47.5 3.0 23 62-84 31-53 (263)
356 1z08_A RAS-related protein RAB 95.5 0.0091 3.1E-07 42.7 3.2 25 60-84 5-29 (170)
357 3kkq_A RAS-related protein M-R 95.5 0.012 4.2E-07 42.7 3.9 25 60-84 17-41 (183)
358 3iev_A GTP-binding protein ERA 95.5 0.01 3.6E-07 47.7 3.8 29 57-85 6-34 (308)
359 3cph_A RAS-related protein SEC 95.5 0.0092 3.1E-07 44.6 3.2 25 60-84 19-43 (213)
360 1z0f_A RAB14, member RAS oncog 95.5 0.011 3.6E-07 42.7 3.5 26 60-85 14-39 (179)
361 2bov_A RAla, RAS-related prote 95.5 0.012 4E-07 43.7 3.8 26 60-85 13-38 (206)
362 3t1o_A Gliding protein MGLA; G 95.5 0.0078 2.7E-07 44.2 2.8 26 60-85 13-38 (198)
363 1r8s_A ADP-ribosylation factor 95.4 0.0077 2.6E-07 42.9 2.6 21 63-83 2-22 (164)
364 1upt_A ARL1, ADP-ribosylation 95.4 0.011 3.8E-07 42.3 3.5 25 60-84 6-30 (171)
365 2r8r_A Sensor protein; KDPD, P 95.4 0.012 4.1E-07 45.4 3.8 24 62-85 7-30 (228)
366 1g16_A RAS-related protein SEC 95.4 0.011 3.7E-07 42.2 3.4 25 61-85 3-27 (170)
367 3cbq_A GTP-binding protein REM 95.4 0.0094 3.2E-07 44.3 3.1 24 60-83 22-45 (195)
368 1m2o_B GTP-binding protein SAR 95.4 0.0082 2.8E-07 44.4 2.8 23 62-84 24-46 (190)
369 3c5c_A RAS-like protein 12; GD 95.4 0.011 3.8E-07 43.5 3.5 26 60-85 20-45 (187)
370 3lxx_A GTPase IMAP family memb 95.4 0.012 4.2E-07 45.2 3.8 27 59-85 27-53 (239)
371 2www_A Methylmalonic aciduria 95.4 0.011 3.7E-07 48.6 3.7 24 60-83 73-96 (349)
372 2cjw_A GTP-binding protein GEM 95.4 0.0089 3E-07 44.4 2.9 23 61-83 6-28 (192)
373 2aka_B Dynamin-1; fusion prote 95.4 0.031 1.1E-06 44.2 6.3 44 40-84 6-49 (299)
374 1nij_A Hypothetical protein YJ 95.4 0.0084 2.9E-07 48.6 3.0 25 60-84 3-27 (318)
375 2bme_A RAB4A, RAS-related prot 95.4 0.0086 2.9E-07 43.6 2.8 26 60-85 9-34 (186)
376 3oes_A GTPase rhebl1; small GT 95.4 0.011 3.9E-07 43.9 3.4 26 60-85 23-48 (201)
377 2y8e_A RAB-protein 6, GH09086P 95.4 0.0087 3E-07 43.1 2.8 23 62-84 15-37 (179)
378 4akg_A Glutathione S-transfera 95.4 0.12 4.2E-06 52.8 11.6 132 41-189 1255-1430(2695)
379 1lw7_A Transcriptional regulat 95.4 0.0099 3.4E-07 49.0 3.4 24 61-84 170-193 (365)
380 3bc1_A RAS-related protein RAB 95.4 0.012 4E-07 43.0 3.5 25 60-84 10-34 (195)
381 3bwd_D RAC-like GTP-binding pr 95.4 0.01 3.5E-07 43.0 3.1 25 61-85 8-32 (182)
382 2a9k_A RAS-related protein RAL 95.4 0.012 4.1E-07 42.7 3.5 26 60-85 17-42 (187)
383 3ld9_A DTMP kinase, thymidylat 95.3 0.0097 3.3E-07 45.8 3.0 29 59-87 19-47 (223)
384 2zts_A Putative uncharacterize 95.3 0.0098 3.3E-07 45.6 3.1 24 61-84 30-53 (251)
385 2h92_A Cytidylate kinase; ross 95.3 0.0072 2.5E-07 45.7 2.3 23 62-84 4-26 (219)
386 1zbd_A Rabphilin-3A; G protein 95.3 0.01 3.6E-07 44.0 3.1 26 60-85 7-32 (203)
387 1tq4_A IIGP1, interferon-induc 95.3 0.01 3.5E-07 49.9 3.4 25 61-85 69-93 (413)
388 2bbs_A Cystic fibrosis transme 95.3 0.0095 3.3E-07 47.7 3.0 24 62-85 65-88 (290)
389 1bif_A 6-phosphofructo-2-kinas 95.3 0.0096 3.3E-07 50.8 3.2 26 60-85 38-63 (469)
390 3ihw_A Centg3; RAS, centaurin, 95.3 0.015 5E-07 42.8 3.9 25 60-84 19-43 (184)
391 1jwy_B Dynamin A GTPase domain 95.3 0.026 8.8E-07 45.1 5.6 42 42-85 7-48 (315)
392 2qm8_A GTPase/ATPase; G protei 95.3 0.019 6.5E-07 46.9 4.8 24 60-83 54-77 (337)
393 1ega_A Protein (GTP-binding pr 95.3 0.013 4.3E-07 47.1 3.7 25 60-84 7-31 (301)
394 3llu_A RAS-related GTP-binding 95.3 0.012 4.1E-07 43.6 3.3 26 60-85 19-44 (196)
395 4dhe_A Probable GTP-binding pr 95.3 0.0095 3.3E-07 44.9 2.8 26 60-85 28-53 (223)
396 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.014 4.7E-07 42.4 3.6 24 61-84 5-28 (186)
397 2oil_A CATX-8, RAS-related pro 95.3 0.014 4.8E-07 42.9 3.6 25 60-84 24-48 (193)
398 1vg8_A RAS-related protein RAB 95.3 0.013 4.4E-07 43.5 3.5 26 60-85 7-32 (207)
399 2zr9_A Protein RECA, recombina 95.2 0.01 3.4E-07 48.9 3.0 72 60-131 60-150 (349)
400 1ksh_A ARF-like protein 2; sma 95.2 0.014 4.9E-07 42.5 3.6 26 60-85 17-42 (186)
401 3vkw_A Replicase large subunit 95.2 0.04 1.4E-06 46.7 6.7 26 58-83 158-183 (446)
402 2fh5_B SR-beta, signal recogni 95.2 0.011 3.7E-07 44.3 3.0 26 60-85 6-31 (214)
403 4dsu_A GTPase KRAS, isoform 2B 95.2 0.013 4.3E-07 42.7 3.2 25 61-85 4-28 (189)
404 2q3h_A RAS homolog gene family 95.2 0.012 4E-07 43.7 3.0 26 60-85 19-44 (201)
405 2efe_B Small GTP-binding prote 95.2 0.013 4.3E-07 42.5 3.2 26 60-85 11-36 (181)
406 1gwn_A RHO-related GTP-binding 95.2 0.01 3.6E-07 44.6 2.8 25 60-84 27-51 (205)
407 2atv_A RERG, RAS-like estrogen 95.2 0.014 4.6E-07 43.2 3.4 24 61-84 28-51 (196)
408 1g8f_A Sulfate adenylyltransfe 95.2 0.0078 2.7E-07 52.0 2.2 26 60-85 394-419 (511)
409 2yv5_A YJEQ protein; hydrolase 95.2 0.018 6.1E-07 46.3 4.3 23 62-85 166-188 (302)
410 2b6h_A ADP-ribosylation factor 95.2 0.016 5.5E-07 42.8 3.7 25 61-85 29-53 (192)
411 2fg5_A RAB-22B, RAS-related pr 95.2 0.011 3.7E-07 43.7 2.7 26 60-85 22-47 (192)
412 4a1f_A DNAB helicase, replicat 95.2 0.039 1.3E-06 45.1 6.3 46 26-85 25-70 (338)
413 2ew1_A RAS-related protein RAB 95.2 0.011 3.7E-07 44.4 2.8 25 60-84 25-49 (201)
414 2j0v_A RAC-like GTP-binding pr 95.2 0.018 6E-07 43.1 4.0 25 60-84 8-32 (212)
415 3g5u_A MCG1178, multidrug resi 95.1 0.019 6.6E-07 55.0 5.0 24 62-85 417-440 (1284)
416 2o52_A RAS-related protein RAB 95.1 0.012 4.2E-07 43.8 3.0 26 60-85 24-49 (200)
417 3reg_A RHO-like small GTPase; 95.1 0.011 3.9E-07 43.5 2.8 26 60-85 22-47 (194)
418 1z06_A RAS-related protein RAB 95.1 0.015 5.1E-07 42.7 3.5 25 60-84 19-43 (189)
419 4gzl_A RAS-related C3 botulinu 95.1 0.014 4.9E-07 43.6 3.4 24 61-84 30-53 (204)
420 4dkx_A RAS-related protein RAB 95.1 0.011 3.8E-07 45.1 2.8 22 63-84 15-36 (216)
421 3thx_B DNA mismatch repair pro 95.1 0.034 1.2E-06 51.4 6.4 23 60-82 672-694 (918)
422 3kjh_A CO dehydrogenase/acetyl 95.1 0.011 3.8E-07 45.3 2.8 21 64-84 3-23 (254)
423 2g6b_A RAS-related protein RAB 95.1 0.017 5.7E-07 41.7 3.6 26 60-85 9-34 (180)
424 2fz4_A DNA repair protein RAD2 95.1 0.02 7E-07 44.2 4.2 21 64-84 111-131 (237)
425 2g3y_A GTP-binding protein GEM 95.1 0.019 6.4E-07 43.6 4.0 24 60-83 36-59 (211)
426 3fdi_A Uncharacterized protein 95.1 0.01 3.5E-07 44.8 2.4 26 61-86 6-31 (201)
427 2j1l_A RHO-related GTP-binding 95.1 0.013 4.4E-07 44.2 3.0 26 60-85 33-58 (214)
428 2p5s_A RAS and EF-hand domain 95.1 0.014 4.9E-07 43.2 3.2 26 60-85 27-52 (199)
429 1v5w_A DMC1, meiotic recombina 95.1 0.024 8.1E-07 46.4 4.8 24 60-83 121-144 (343)
430 3k53_A Ferrous iron transport 95.1 0.016 5.5E-07 45.5 3.7 25 61-85 3-27 (271)
431 1x3s_A RAS-related protein RAB 95.1 0.012 4.1E-07 43.1 2.8 25 61-85 15-39 (195)
432 4edh_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 44.8 2.9 26 61-86 6-31 (213)
433 3d31_A Sulfate/molybdate ABC t 95.0 0.011 3.9E-07 48.5 2.8 23 62-84 27-49 (348)
434 3l0o_A Transcription terminati 95.0 0.005 1.7E-07 51.4 0.6 38 42-85 162-199 (427)
435 1g29_1 MALK, maltose transport 95.0 0.013 4.6E-07 48.6 3.2 22 62-83 30-51 (372)
436 3g5u_A MCG1178, multidrug resi 95.0 0.013 4.6E-07 56.0 3.5 24 62-85 1060-1083(1284)
437 2il1_A RAB12; G-protein, GDP, 95.0 0.017 5.9E-07 42.6 3.5 26 60-85 25-50 (192)
438 2h17_A ADP-ribosylation factor 95.0 0.016 5.5E-07 42.2 3.3 26 60-85 20-45 (181)
439 2h57_A ADP-ribosylation factor 95.0 0.012 4E-07 43.3 2.5 26 60-85 20-45 (190)
440 1zcb_A G alpha I/13; GTP-bindi 95.0 0.016 5.5E-07 47.9 3.6 37 43-81 17-53 (362)
441 1x6v_B Bifunctional 3'-phospho 95.0 0.015 5.2E-07 51.4 3.6 26 60-85 51-76 (630)
442 3dz8_A RAS-related protein RAB 95.0 0.014 4.7E-07 43.0 2.9 24 61-84 23-46 (191)
443 2gf9_A RAS-related protein RAB 95.0 0.018 6E-07 42.3 3.5 26 60-85 21-46 (189)
444 3cr8_A Sulfate adenylyltranfer 95.0 0.012 4.2E-07 51.3 2.9 25 61-85 369-393 (552)
445 2bcg_Y Protein YP2, GTP-bindin 95.0 0.013 4.4E-07 43.6 2.7 26 60-85 7-32 (206)
446 3tqf_A HPR(Ser) kinase; transf 95.0 0.016 5.6E-07 42.8 3.2 23 62-84 17-39 (181)
447 1zd9_A ADP-ribosylation factor 95.0 0.017 5.9E-07 42.4 3.4 25 60-84 21-45 (188)
448 3lda_A DNA repair protein RAD5 95.0 0.013 4.6E-07 49.0 3.0 22 61-82 178-199 (400)
449 3tkl_A RAS-related protein RAB 95.0 0.018 6.2E-07 42.2 3.5 26 60-85 15-40 (196)
450 2xtp_A GTPase IMAP family memb 95.0 0.018 6.3E-07 44.7 3.7 26 60-85 21-46 (260)
451 2qnr_A Septin-2, protein NEDD5 95.0 0.012 4E-07 47.3 2.6 22 63-84 20-41 (301)
452 3fkq_A NTRC-like two-domain pr 94.9 0.019 6.6E-07 47.4 3.9 28 58-85 140-168 (373)
453 2a5j_A RAS-related protein RAB 94.9 0.019 6.4E-07 42.3 3.5 26 60-85 20-45 (191)
454 1m8p_A Sulfate adenylyltransfe 94.9 0.016 5.6E-07 50.8 3.6 27 60-86 395-421 (573)
455 1u94_A RECA protein, recombina 94.9 0.014 4.8E-07 48.1 3.0 25 61-85 63-87 (356)
456 2ffh_A Protein (FFH); SRP54, s 94.9 0.016 5.6E-07 48.9 3.5 26 60-85 97-122 (425)
457 1oxx_K GLCV, glucose, ABC tran 94.9 0.011 3.6E-07 48.8 2.2 22 62-83 32-53 (353)
458 2gza_A Type IV secretion syste 94.9 0.012 4.1E-07 48.5 2.6 26 62-87 176-201 (361)
459 3ez2_A Plasmid partition prote 94.9 0.055 1.9E-06 44.9 6.7 26 59-84 106-132 (398)
460 3io3_A DEHA2D07832P; chaperone 94.9 0.018 6.1E-07 47.3 3.6 26 60-85 17-42 (348)
461 2atx_A Small GTP binding prote 94.9 0.014 4.8E-07 42.9 2.7 25 60-84 17-41 (194)
462 3dzd_A Transcriptional regulat 94.9 0.12 4.2E-06 42.6 8.6 22 63-84 154-175 (368)
463 2r6a_A DNAB helicase, replicat 94.9 0.051 1.7E-06 46.1 6.5 26 61-86 203-228 (454)
464 4dzz_A Plasmid partitioning pr 94.9 0.015 5.3E-07 43.2 2.9 25 62-86 2-27 (206)
465 2gf0_A GTP-binding protein DI- 94.9 0.021 7.1E-07 42.0 3.6 25 60-84 7-31 (199)
466 2f7s_A C25KG, RAS-related prot 94.9 0.017 5.7E-07 43.4 3.1 25 60-84 24-48 (217)
467 2fv8_A H6, RHO-related GTP-bin 94.9 0.015 5E-07 43.5 2.7 25 61-85 25-49 (207)
468 1mky_A Probable GTP-binding pr 94.9 0.045 1.5E-06 46.2 6.0 26 60-85 179-204 (439)
469 2fu5_C RAS-related protein RAB 94.9 0.0088 3E-07 43.5 1.5 26 60-85 7-32 (183)
470 1c9k_A COBU, adenosylcobinamid 94.8 0.016 5.4E-07 43.1 2.8 21 64-84 2-22 (180)
471 2e87_A Hypothetical protein PH 94.8 0.05 1.7E-06 44.6 6.1 27 59-85 165-191 (357)
472 2gco_A H9, RHO-related GTP-bin 94.8 0.015 5.3E-07 43.2 2.8 25 61-85 25-49 (201)
473 1wf3_A GTP-binding protein; GT 94.8 0.023 7.8E-07 45.6 3.9 26 60-85 6-31 (301)
474 2i1q_A DNA repair and recombin 94.8 0.018 6.2E-07 46.5 3.3 24 60-83 97-120 (322)
475 3lv8_A DTMP kinase, thymidylat 94.8 0.014 4.8E-07 45.3 2.6 27 60-86 26-52 (236)
476 3gd7_A Fusion complex of cysti 94.8 0.017 5.7E-07 48.3 3.1 22 62-83 48-69 (390)
477 1u0l_A Probable GTPase ENGC; p 94.8 0.027 9.2E-07 45.2 4.3 24 62-85 170-193 (301)
478 2z43_A DNA repair and recombin 94.8 0.016 5.6E-07 46.9 3.0 23 61-83 107-129 (324)
479 2q6t_A DNAB replication FORK h 94.7 0.05 1.7E-06 46.0 6.1 25 61-85 200-224 (444)
480 1p9r_A General secretion pathw 94.7 0.032 1.1E-06 47.0 4.8 24 62-85 168-191 (418)
481 3q3j_B RHO-related GTP-binding 94.7 0.017 5.7E-07 43.6 2.8 24 61-84 27-50 (214)
482 3bgw_A DNAB-like replicative h 94.7 0.049 1.7E-06 46.2 5.9 25 61-85 197-221 (444)
483 2hup_A RAS-related protein RAB 94.7 0.022 7.4E-07 42.5 3.4 26 60-85 28-53 (201)
484 3v9p_A DTMP kinase, thymidylat 94.6 0.012 4.2E-07 45.4 1.8 28 61-88 25-52 (227)
485 2rcn_A Probable GTPase ENGC; Y 94.6 0.02 6.9E-07 47.2 3.1 24 62-85 216-239 (358)
486 3ch4_B Pmkase, phosphomevalona 94.6 0.027 9.2E-07 42.6 3.6 24 60-83 10-33 (202)
487 3k9g_A PF-32 protein; ssgcid, 94.6 0.02 6.9E-07 44.7 3.1 27 59-85 25-52 (267)
488 2x77_A ADP-ribosylation factor 94.6 0.021 7.2E-07 41.8 3.0 25 61-85 22-46 (189)
489 3iqw_A Tail-anchored protein t 94.6 0.024 8.2E-07 46.3 3.5 25 60-84 15-39 (334)
490 3b1v_A Ferrous iron uptake tra 94.5 0.027 9.1E-07 44.6 3.6 24 61-84 3-26 (272)
491 3a1s_A Iron(II) transport prot 94.5 0.027 9.3E-07 44.1 3.6 26 60-85 4-29 (258)
492 3ug7_A Arsenical pump-driving 94.5 0.037 1.3E-06 45.4 4.5 26 60-85 25-50 (349)
493 2obl_A ESCN; ATPase, hydrolase 94.5 0.02 6.8E-07 47.0 2.8 24 62-85 72-95 (347)
494 3ea0_A ATPase, para family; al 94.5 0.027 9.3E-07 43.1 3.5 26 60-85 3-29 (245)
495 3lxw_A GTPase IMAP family memb 94.4 0.032 1.1E-06 43.3 3.8 26 60-85 20-45 (247)
496 3hdt_A Putative kinase; struct 94.4 0.023 7.7E-07 43.7 2.9 25 61-85 14-38 (223)
497 3iby_A Ferrous iron transport 94.4 0.026 8.8E-07 44.2 3.3 24 62-85 2-25 (256)
498 3cpj_B GTP-binding protein YPT 94.4 0.022 7.4E-07 43.2 2.7 26 60-85 12-37 (223)
499 2qtf_A Protein HFLX, GTP-bindi 94.4 0.025 8.6E-07 46.7 3.3 26 60-85 178-203 (364)
500 3tmk_A Thymidylate kinase; pho 94.4 0.021 7.3E-07 43.6 2.6 25 61-85 5-29 (216)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.93 E-value=2.4e-26 Score=201.75 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=117.1
Q ss_pred hhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhc--ChhHH--------
Q 039853 19 KLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYN--DKTVN-------- 88 (206)
Q Consensus 19 ~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~-------- 88 (206)
.+|..+.. |||+.+ +++|.++|..... +..++|+|+|+||+||||||+.+|+ +.+..
T Consensus 123 ~~p~~~~~-~GR~~~--------~~~l~~~L~~~~~----~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~w 189 (549)
T 2a5y_B 123 NVPKQMTC-YIREYH--------VDRVIKKLDEMCD----LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW 189 (549)
T ss_dssp TCBCCCCS-CCCHHH--------HHHHHHHHHHHTT----SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEE
T ss_pred CCCCCCcc-CCchHH--------HHHHHHHHhcccC----CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEE
Confidence 34443333 599999 9999999975522 3579999999999999999999996 22111
Q ss_pred ------------H----HHhhhCCCC-----CCCCCCCHHHHHHHHHhhhCCc-eEEEEEcCCCCCCcccHHHHHhhccc
Q 039853 89 ------------S----IHNTISPET-----ASASDDNLNSLQVKLKSGLSRK-KFQLASGDMWKDKYVDWTNQRVLFVA 146 (206)
Q Consensus 89 ------------~----i~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~ 146 (206)
. ++.+++... ......+...+...+++.|.++ ||||||||+| +.+.+ . ++
T Consensus 190 v~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~--~~~~~-~----~~- 261 (549)
T 2a5y_B 190 LKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV--QEETI-R----WA- 261 (549)
T ss_dssp EECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC--CHHHH-H----HH-
T ss_pred EEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC--Cchhh-c----cc-
Confidence 1 566665432 1122335667889999999996 9999999999 65544 1 22
Q ss_pred CCCCcEEEEeCCChHHHHhcCCC-CceeCCCCCHHHHHHHHhhccCCCCC
Q 039853 147 VASRRKVIVTTRNQGVTSIMGTM-PAYELKKLVNDSCRLIFSQHPSGTRE 195 (206)
Q Consensus 147 ~~~gs~IiiTTR~~~v~~~~~~~-~~~~l~~L~~~~a~~Lf~~~af~~~~ 195 (206)
..+||+||||||+..++..++.. .+|+|++|+.++||+||.++||+...
T Consensus 262 ~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 311 (549)
T 2a5y_B 262 QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV 311 (549)
T ss_dssp HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-
T ss_pred ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC
Confidence 12799999999999999887633 57999999999999999999998753
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=2.4e-23 Score=195.97 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=119.6
Q ss_pred hhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---------
Q 039853 19 KLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--------- 89 (206)
Q Consensus 19 ~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------- 89 (206)
.+|+..+.|+||+++ +++|.++|..... ..++|+|+|+||+||||||+++|++.+...
T Consensus 118 ~~p~~~~~~vgR~~~--------~~~l~~~l~~~~~-----~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~ 184 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKL--------VHAIQQKLWKLNG-----EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHW 184 (1249)
T ss_dssp TCCCCCSSCCCCHHH--------HHHHHHHHHTTTT-----SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEE
T ss_pred CCCCCCceeccHHHH--------HHHHHHHHhhccC-----CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEE
Confidence 456677889999999 9999999976543 679999999999999999999998853311
Q ss_pred -----------------HHhhhCCCC--CCCCCCCHHHHHHHHHhhhCCc--eEEEEEcCCCCCCcccHHHHHhhcccCC
Q 039853 90 -----------------IHNTISPET--ASASDDNLNSLQVKLKSGLSRK--KFQLASGDMWKDKYVDWTNQRVLFVAVA 148 (206)
Q Consensus 90 -----------------i~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~ 148 (206)
++..+.... ......+.+.+.+.++..+.++ ||||||||+| +...|.. .+
T Consensus 185 v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~--~~~~~~~-------~~ 255 (1249)
T 3sfz_A 185 VSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKA-------FD 255 (1249)
T ss_dssp EECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC--CHHHHTT-------TC
T ss_pred EEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC--CHHHHHh-------hc
Confidence 333333322 1123456788889999999877 9999999999 6655443 25
Q ss_pred CCcEEEEeCCChHHHHh-cCCCCceeCCC-CCHHHHHHHHhhccCCC
Q 039853 149 SRRKVIVTTRNQGVTSI-MGTMPAYELKK-LVNDSCRLIFSQHPSGT 193 (206)
Q Consensus 149 ~gs~IiiTTR~~~v~~~-~~~~~~~~l~~-L~~~~a~~Lf~~~af~~ 193 (206)
+||+||||||++.++.. ....+.+.+.+ |+.++|++||...++..
T Consensus 256 ~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~ 302 (1249)
T 3sfz_A 256 NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK 302 (1249)
T ss_dssp SSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC
T ss_pred CCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC
Confidence 79999999999998854 34557899996 99999999999988544
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.85 E-value=2.4e-21 Score=177.39 Aligned_cols=140 Identities=20% Similarity=0.219 Sum_probs=101.0
Q ss_pred eeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------
Q 039853 27 LFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------------- 89 (206)
Q Consensus 27 ~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------- 89 (206)
.+||+.+ +++|.++|...+ ..++|+|+|+||+||||||+.+|++.++..
T Consensus 130 ~VGRe~e--------LeeL~elL~~~d------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 130 NVSRLQP--------YLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp CCCCHHH--------HHHHHHHHHHCC------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred CCCcHHH--------HHHHHHHHhccC------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 3999999 999999997532 368999999999999999999997543221
Q ss_pred ------HHh---hhCCCCC-CCC-----CCCHHHHHHHHHhhh---CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCc
Q 039853 90 ------IHN---TISPETA-SAS-----DDNLNSLQVKLKSGL---SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRR 151 (206)
Q Consensus 90 ------i~~---~~~~~~~-~~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 151 (206)
++. .+..... ... ..+.+.+.+.+++.| .++|+||||||+| +.+.|..+ + +||
T Consensus 196 ~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw--d~eqLe~f----~---pGS 266 (1221)
T 1vt4_I 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAF----N---LSC 266 (1221)
T ss_dssp HHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC--CHHHHHHH----H---SSC
T ss_pred HHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC--hHHHHHhh----C---CCe
Confidence 222 2211110 000 012344566677765 6899999999999 77777654 2 689
Q ss_pred EEEEeCCChHHHHhcCCCCceeCC------CCCHHHHHHHHhhc
Q 039853 152 KVIVTTRNQGVTSIMGTMPAYELK------KLVNDSCRLIFSQH 189 (206)
Q Consensus 152 ~IiiTTR~~~v~~~~~~~~~~~l~------~L~~~~a~~Lf~~~ 189 (206)
+||||||++.++..+.....|.++ +|+.++|++||+++
T Consensus 267 RILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp CEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred EEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 999999999988644333356666 89999999999988
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=169.75 Aligned_cols=151 Identities=18% Similarity=0.263 Sum_probs=111.6
Q ss_pred hhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH-HH--------
Q 039853 19 KLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV-NS-------- 89 (206)
Q Consensus 19 ~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~-------- 89 (206)
.+|+.++.|+||+.+ ++.|.++|..... ..++|+|+|+||+||||||..++++.+. ..
T Consensus 118 ~~P~~~~~~vGR~~~--------l~~L~~~L~~~~~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~w 184 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKL--------VNAIQQKLSKLKG-----EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW 184 (591)
T ss_dssp TCCCCCSSCCCCHHH--------HHHHHHHHTTSTT-----SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEE
T ss_pred CCCCCCCeecccHHH--------HHHHHHHHhcccC-----CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEE
Confidence 556778889999999 9999999975432 5689999999999999999999987643 11
Q ss_pred -----------------HHhhhCCCC--CCCCCCCHHHHHHHHHhhhCC--ceEEEEEcCCCCCCcccHHHHHhhcccCC
Q 039853 90 -----------------IHNTISPET--ASASDDNLNSLQVKLKSGLSR--KKFQLASGDMWKDKYVDWTNQRVLFVAVA 148 (206)
Q Consensus 90 -----------------i~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 148 (206)
++..+.... ......+...+...+...+.+ +++||||||+| +...+. .+ +
T Consensus 185 v~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~--~~~~l~----~l---~ 255 (591)
T 1z6t_A 185 VSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLK----AF---D 255 (591)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC--CHHHHH----TT---C
T ss_pred EECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC--CHHHHH----Hh---c
Confidence 122232111 012345667777888888865 78999999999 544332 22 5
Q ss_pred CCcEEEEeCCChHHHHhcCCCCceeC---CCCCHHHHHHHHhhccCC
Q 039853 149 SRRKVIVTTRNQGVTSIMGTMPAYEL---KKLVNDSCRLIFSQHPSG 192 (206)
Q Consensus 149 ~gs~IiiTTR~~~v~~~~~~~~~~~l---~~L~~~~a~~Lf~~~af~ 192 (206)
+|++||||||+..++..+.. ..+++ ++|+.+++++||...++.
T Consensus 256 ~~~~ilvTsR~~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 256 SQCQILLTTRDKSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp SSCEEEEEESCGGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred CCCeEEEECCCcHHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCC
Confidence 78999999999988765432 34444 589999999999998865
No 5
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.38 E-value=2.2e-12 Score=98.77 Aligned_cols=152 Identities=8% Similarity=0.032 Sum_probs=99.8
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..++||+.. ++.+.+++..... +.+.|+|++|+|||+||+.+++.......-..+.... ...
T Consensus 15 ~~~~~~g~~~~--------~~~l~~~l~~~~~-------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~-~~~ 78 (226)
T 2chg_A 15 TLDEVVGQDEV--------IQRLKGYVERKNI-------PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASD 78 (226)
T ss_dssp SGGGCCSCHHH--------HHHHHHHHHTTCC-------CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE-TTC
T ss_pred CHHHHcCcHHH--------HHHHHHHHhCCCC-------CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec-ccc
Confidence 34568999999 9999998866532 3499999999999999999876542211000000000 012
Q ss_pred CCCHHHHHHHHHhhh------CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHH--HHhcCCCCceeC
Q 039853 103 DDNLNSLQVKLKSGL------SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGV--TSIMGTMPAYEL 174 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v--~~~~~~~~~~~l 174 (206)
..........+.... ..++.+|++||++..+...+..+...+.....+..+|+||+.... .........+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 79 ERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred ccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 223344444444433 257889999999966666677777777666677788888876431 111222247899
Q ss_pred CCCCHHHHHHHHhhcc
Q 039853 175 KKLVNDSCRLIFSQHP 190 (206)
Q Consensus 175 ~~L~~~~a~~Lf~~~a 190 (206)
.+++.++..+++.+.+
T Consensus 159 ~~~~~~~~~~~l~~~~ 174 (226)
T 2chg_A 159 KPVPKEAMKKRLLEIC 174 (226)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 6
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=2.7e-12 Score=99.42 Aligned_cols=153 Identities=10% Similarity=0.054 Sum_probs=99.5
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
....++||+.. ++.|..++.... ..+.+.|+|++|+|||+||+.+++......
T Consensus 21 ~~~~~~g~~~~--------~~~l~~~l~~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 21 TFADVVGQEHV--------LTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp SGGGCCSCHHH--------HHHHHHHHHHTC------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred cHHHHhCcHHH--------HHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 34568999999 999999886543 235899999999999999999876543211
Q ss_pred --HHhhhCCCC---CCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 90 --IHNTISPET---ASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 90 --i~~~~~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
+........ ............. +.+.+ .+++.+||+||++..+...+..+...+.....+..+|+||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHH-HHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHhccCCcceEEecCcccccHHHHHH-HHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 110000000 0001112222323 33332 346789999999866677788888777766667788888865
Q ss_pred hH-HH-HhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 160 QG-VT-SIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 160 ~~-v~-~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.. +. ........+.+++++.++..+++...+
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHH
Confidence 43 21 112223579999999999999998765
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.36 E-value=1.7e-12 Score=109.12 Aligned_cols=155 Identities=14% Similarity=0.006 Sum_probs=95.1
Q ss_pred CCceeeecccchhhhHHhHHHHHHHH-hCCCCCCC-CCCeeEEEE--EcCCCchHHHHHHHHhcChhHH-------H---
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELI-LKDDSECN-DGGLSVTPV--IGMGGSGNTTLALPVYNDKTVN-------S--- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l-~~~~~~~~-~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~-------~--- 89 (206)
+..|+||+.+ ++.|.+++ ..... + ......+.| +|++|+|||+||+.+++..... .
T Consensus 21 p~~l~gR~~e--------l~~l~~~l~~~~~~--~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 21 PPELRVRRGE--------AEALARIYLNRLLS--GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp CSSCSSSCHH--------HHHHHHHHHHHHHT--SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCChHHH--------HHHHHHHHhHHHhc--CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 4679999999 88888887 32110 0 012356666 9999999999999988765321 0
Q ss_pred ----------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCC------cccHHHHHhhcc
Q 039853 90 ----------------IHNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDK------YVDWTNQRVLFV 145 (206)
Q Consensus 90 ----------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~ 145 (206)
++..++.... ....+...+...+.+.+. +++++||+||++... .+.+..+...+.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQ-VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHE 169 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCC-CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHH
Confidence 4444443320 112344556666666664 679999999998431 133333333333
Q ss_pred cC---C--CCcEEEEeCCChHHHHh--------cCC-CCceeCCCCCHHHHHHHHhhc
Q 039853 146 AV---A--SRRKVIVTTRNQGVTSI--------MGT-MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 146 ~~---~--~gs~IiiTTR~~~v~~~--------~~~-~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.. + ....+|+||+...+... ... ...+.+++|+.++.+++|...
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHH
Confidence 22 2 33457778875543211 111 123899999999999999754
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=1.2e-11 Score=103.04 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--------H------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN--------S------ 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~------ 89 (206)
+..++||+.+ ++.+.+++..... ....+.+.|+|++|+|||+||+.+++..... .
T Consensus 19 p~~l~gr~~~--------~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 19 FKEIPFREDI--------LRDAAIAIRYFVK---NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp CSSCTTCHHH--------HHHHHHHHHHHHT---TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCCCChHHH--------HHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 3679999999 8888877754211 1234689999999999999999998754111 1
Q ss_pred ---------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHH-HhhcccCCCCcEE
Q 039853 90 ---------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQ-RVLFVAVASRRKV 153 (206)
Q Consensus 90 ---------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~I 153 (206)
++..+..............+...+.+.+..++.+||||+++......+... ...+.....+..+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~i 167 (384)
T 2qby_B 88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISV 167 (384)
T ss_dssp EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEE
T ss_pred ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEE
Confidence 233331111011223345566777777877666999999984322211222 2222222267788
Q ss_pred EEeCCChHHH-----Hh-cCCCCceeCCCCCHHHHHHHHhhc
Q 039853 154 IVTTRNQGVT-----SI-MGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 154 iiTTR~~~v~-----~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
|+||+..... .. ......+.+++++.++..++|...
T Consensus 168 I~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 168 IMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp EEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 8888865321 11 111237999999999999999986
No 9
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=1.7e-11 Score=99.53 Aligned_cols=151 Identities=9% Similarity=0.049 Sum_probs=99.9
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-HHhhhCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-IHNTISPETASA 101 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-i~~~~~~~~~~~ 101 (206)
.-..++||+.. ++.|.+++..... +.+.++|++|+|||++|+.+++...... -...+.... .
T Consensus 19 ~~~~~~g~~~~--------~~~l~~~l~~~~~-------~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~ 81 (323)
T 1sxj_B 19 VLSDIVGNKET--------IDRLQQIAKDGNM-------PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA--S 81 (323)
T ss_dssp SGGGCCSCTHH--------HHHHHHHHHSCCC-------CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT--T
T ss_pred CHHHHHCCHHH--------HHHHHHHHHcCCC-------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC--c
Confidence 34568999999 9999999865542 3389999999999999999887642211 001111111 1
Q ss_pred CCCCHHHHHHHHHhhh-------CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH-H-HHhcCCCCce
Q 039853 102 SDDNLNSLQVKLKSGL-------SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG-V-TSIMGTMPAY 172 (206)
Q Consensus 102 ~~~~~~~~~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v-~~~~~~~~~~ 172 (206)
+....+.+.+.+.... .+++.++|+|+++..+...+..+...+.....++.+|+||+... + .........+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 82 DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 2223444444444332 44688999999996666667777777766666778888776532 1 1122223479
Q ss_pred eCCCCCHHHHHHHHhhcc
Q 039853 173 ELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 173 ~l~~L~~~~a~~Lf~~~a 190 (206)
++.+++.++..+++...+
T Consensus 162 ~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.25 E-value=1.9e-11 Score=100.19 Aligned_cols=149 Identities=16% Similarity=0.204 Sum_probs=93.9
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh--------hHH------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK--------TVN------ 88 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~--------~~~------ 88 (206)
.+..|+||+.+ ++.|.+++... +++.|+|++|+|||+|++.+++.. ...
T Consensus 10 ~~~~~~gR~~e--------l~~L~~~l~~~---------~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEE--------SRKLEESLENY---------PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHH--------HHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHH--------HHHHHHHHhcC---------CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCC
Confidence 45679999999 99999988532 589999999999999999886541 111
Q ss_pred ---H----HHhhhCC---------------C-CCCCCCCCHHHHHHHHHhhhCC-ceEEEEEcCCCCCCc-------ccH
Q 039853 89 ---S----IHNTISP---------------E-TASASDDNLNSLQVKLKSGLSR-KKFQLASGDMWKDKY-------VDW 137 (206)
Q Consensus 89 ---~----i~~~~~~---------------~-~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~ 137 (206)
. +...+.. . .......+...+.+.+.+.... ++.+||+||++..+. ..+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 1 2232221 0 0000123455555556555543 389999999984321 223
Q ss_pred HHHHhhcccCCCCcEEEEeCCChHH-HHh----------cCC-CCceeCCCCCHHHHHHHHhhc
Q 039853 138 TNQRVLFVAVASRRKVIVTTRNQGV-TSI----------MGT-MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 138 ~~l~~~l~~~~~gs~IiiTTR~~~v-~~~----------~~~-~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
..+...+.. .++.++|+|++.... ... .+. ...+++.+|+.+++.+++...
T Consensus 153 ~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 153 ALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence 333333322 257789999887653 221 111 136899999999999999764
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.23 E-value=2.6e-11 Score=100.71 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=95.3
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH------H-------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN------S------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------~------- 89 (206)
.+..++||+.+ ++.+..++...-. ....+.+.|+|++|+|||+||+.+++..... .
T Consensus 17 ~p~~~~gr~~~--------~~~l~~~l~~~~~---~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 17 VPDVLPHREAE--------LRRLAEVLAPALR---GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCSCCTTCHHH--------HHHHHHTTGGGTS---SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCHHHH--------HHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 34679999999 9999998854211 1245689999999999999999998765221 1
Q ss_pred -------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCCcc--cHHHHHhhcc--cC---
Q 039853 90 -------------IHNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDKYV--DWTNQRVLFV--AV--- 147 (206)
Q Consensus 90 -------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~--~~~~l~~~l~--~~--- 147 (206)
++..++... .....+...+...+.+.+. +++.+|+||+++..... ..+.+...+. ..
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRV-PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCC-CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred CCcCCCHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC
Confidence 444443322 0122335555666666663 46889999999843222 2223322222 11
Q ss_pred CCCcEEEEeCCChHHH-----HhcCC-C-CceeCCCCCHHHHHHHHhhc
Q 039853 148 ASRRKVIVTTRNQGVT-----SIMGT-M-PAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 148 ~~gs~IiiTTR~~~v~-----~~~~~-~-~~~~l~~L~~~~a~~Lf~~~ 189 (206)
..+..+|.||+..... ..... . ..+.+++++.++..++|...
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 3455677777654221 11111 1 36899999999999999876
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=1.8e-11 Score=101.51 Aligned_cols=154 Identities=9% Similarity=0.031 Sum_probs=94.6
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH---H-----------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN---S----------- 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~----------- 89 (206)
+..|+||+.+ ++.|.+++..... ......+.|+|++|+||||||+.+++..... .
T Consensus 19 p~~~~gr~~e--------~~~l~~~l~~~~~---~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 19 PDELPHREDQ--------IRKIASILAPLYR---EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CSCCTTCHHH--------HHHHHHSSGGGGG---TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCChHHH--------HHHHHHHHHHHHc---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 4679999999 9999988864210 1245689999999999999999988754221 1
Q ss_pred -----HHhh----hCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCC----cccHHHHHhhccc-CCCCcEE
Q 039853 90 -----IHNT----ISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDK----YVDWTNQRVLFVA-VASRRKV 153 (206)
Q Consensus 90 -----i~~~----~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~I 153 (206)
++.. ++... .....+.....+.+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+
T Consensus 88 ~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKV-PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISF 166 (386)
T ss_dssp CSHHHHHHHHTTTTSCCC-CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEE
T ss_pred CCHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEE
Confidence 2222 22111 0112234555556666554 458999999997321 3334444443322 2234556
Q ss_pred EEeCCChHHHHhcC------C-CCceeCCCCCHHHHHHHHhhc
Q 039853 154 IVTTRNQGVTSIMG------T-MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 154 iiTTR~~~v~~~~~------~-~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
|+||+.......+. . ...+.+++++.++..++|...
T Consensus 167 I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 167 IGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp EEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH
T ss_pred EEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH
Confidence 77777654322111 1 136999999999999999875
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=6.9e-11 Score=98.36 Aligned_cols=157 Identities=13% Similarity=0.024 Sum_probs=100.1
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH--H------------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN--S------------ 89 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~------------ 89 (206)
+..++||+.+ ++.+..++...... ..+..+.+.|+|++|+||||||+.+++..... .
T Consensus 16 p~~l~gr~~~--------~~~l~~~l~~~~~~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQ--------LQQLDILLGNWLRN-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHH--------HHHHHHHHHHHHHS-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHH--------HHHHHHHHHHHHcC-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 3679999999 88888887542100 01123489999999999999999887654221 0
Q ss_pred -------HHhhhCCCCCCCCCCCHHHHHHHHHhhhC--CceEEEEEcCCCCCCcccHHHHHhhcccCC----CCcEEEEe
Q 039853 90 -------IHNTISPETASASDDNLNSLQVKLKSGLS--RKKFQLASGDMWKDKYVDWTNQRVLFVAVA----SRRKVIVT 156 (206)
Q Consensus 90 -------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~IiiT 156 (206)
++..++... .........+.+.+...+. +++.+|+||+++..+...+..+...+.... .+..+|++
T Consensus 87 ~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPF-PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHHHHHHHTTCCC-CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHHHHHHHhCccC-CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 334443222 0122345555566655553 568899999998665566666655553221 36677777
Q ss_pred CCChHHHHhcC-------CCCceeCCCCCHHHHHHHHhhcc
Q 039853 157 TRNQGVTSIMG-------TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 157 TR~~~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|+......... ....+.+++++.++..+++...+
T Consensus 166 ~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 166 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp ESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred ECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 77654433221 11369999999999999998753
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=3.8e-11 Score=98.59 Aligned_cols=147 Identities=13% Similarity=0.175 Sum_probs=89.6
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChh----------H-----
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKT----------V----- 87 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----------~----- 87 (206)
.+..|+||+.+ ++.|.+ +.. +++.|+|++|+|||+|++.+++... .
T Consensus 11 ~~~~~~gR~~e--------l~~L~~-l~~----------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 11 NRKDFFDREKE--------IEKLKG-LRA----------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp SGGGSCCCHHH--------HHHHHH-TCS----------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CHHHhcChHHH--------HHHHHH-hcC----------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 45679999999 998888 621 4899999999999999988865321 0
Q ss_pred ---HH----HHhhhC-------------CCC-----CC---------CCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC
Q 039853 88 ---NS----IHNTIS-------------PET-----AS---------ASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK 133 (206)
Q Consensus 88 ---~~----i~~~~~-------------~~~-----~~---------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 133 (206)
.. +.+.+. ... .. ........+.+.+.+.-. ++++||+||++..+
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELV 150 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhh
Confidence 11 111110 000 00 012234455555544333 48999999998532
Q ss_pred ---cccHHHHHhhcccCCCCcEEEEeCCChHHHH-h---------c-CC-CCceeCCCCCHHHHHHHHhhc
Q 039853 134 ---YVDWTNQRVLFVAVASRRKVIVTTRNQGVTS-I---------M-GT-MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 134 ---~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~-~---------~-~~-~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
...|..+...+....++.++|+|++...... . . +. ...+++.+|+.+++.+++...
T Consensus 151 ~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~ 221 (357)
T 2fna_A 151 KLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRG 221 (357)
T ss_dssp GCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHH
Confidence 1223333333322234678999998865322 1 1 11 246899999999999999864
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=1.4e-10 Score=94.36 Aligned_cols=152 Identities=10% Similarity=0.054 Sum_probs=95.8
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..++|++.. ++.+..++..... +.+.++|++|+|||++|+.+++..........+..-. ..+
T Consensus 23 ~~~~~~g~~~~--------~~~l~~~l~~~~~-------~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~ 86 (327)
T 1iqp_A 23 RLDDIVGQEHI--------VKRLKHYVKTGSM-------PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASD 86 (327)
T ss_dssp STTTCCSCHHH--------HHHHHHHHHHTCC-------CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTC
T ss_pred CHHHhhCCHHH--------HHHHHHHHHcCCC-------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccc
Confidence 34568999999 9999988865532 3499999999999999999887642111000000000 001
Q ss_pred CCCHHHHHHHHHhh-----hC-CceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHH--HHhcCCCCceeC
Q 039853 103 DDNLNSLQVKLKSG-----LS-RKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGV--TSIMGTMPAYEL 174 (206)
Q Consensus 103 ~~~~~~~~~~l~~~-----l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v--~~~~~~~~~~~l 174 (206)
....+.....+... +. +++.++|+|+++..+...+..+...+.....++++|+||....- .........+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 87 ERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred cCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 00111122222221 11 56889999999976667777787777766677788888765431 111111236899
Q ss_pred CCCCHHHHHHHHhhcc
Q 039853 175 KKLVNDSCRLIFSQHP 190 (206)
Q Consensus 175 ~~L~~~~a~~Lf~~~a 190 (206)
.+++.++..+++...+
T Consensus 167 ~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIA 182 (327)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999888654
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.08 E-value=4.2e-10 Score=84.00 Aligned_cols=141 Identities=10% Similarity=0.064 Sum_probs=82.1
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-------H------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------S------ 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------~------ 89 (206)
.-..++||+++ ++.+.+++.... .+.+.|+|++|+|||+||+.+++..... .
T Consensus 20 ~~~~~~g~~~~--------~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 20 KLDPVIGRDEE--------IRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp CSCCCCSCHHH--------HHHHHHHHTSSS-------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred cccccccchHH--------HHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 45668999999 999999986543 3568899999999999999887764221 0
Q ss_pred -HHhhhCCCCCCCCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCC--------cccHHHHHhhcccCCCCcEEEE
Q 039853 90 -IHNTISPETASASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDK--------YVDWTNQRVLFVAVASRRKVIV 155 (206)
Q Consensus 90 -i~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~Iii 155 (206)
....+.. ..........+...+ .+++.+|++|+++... ......+...+. .+ +..+|.
T Consensus 85 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~-~~~~i~ 156 (195)
T 1jbk_A 85 DMGALVAG------AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RG-ELHCVG 156 (195)
T ss_dssp CHHHHHTT------TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TT-SCCEEE
T ss_pred eHHHHhcc------CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cC-CeEEEE
Confidence 1111110 111122222222222 3567899999998542 122333333332 33 334666
Q ss_pred eCCChHHHH-------hcCCCCceeCCCCCHHHHHHHH
Q 039853 156 TTRNQGVTS-------IMGTMPAYELKKLVNDSCRLIF 186 (206)
Q Consensus 156 TTR~~~v~~-------~~~~~~~~~l~~L~~~~a~~Lf 186 (206)
||....... .......+.+.+++.++..+++
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 665544221 1122235889999888877654
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.96 E-value=6.9e-10 Score=89.85 Aligned_cols=151 Identities=7% Similarity=0.018 Sum_probs=93.0
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH---HHHHhhhCCCCCC
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV---NSIHNTISPETAS 100 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~i~~~~~~~~~~ 100 (206)
-..++|++.. ++.+.+++.... .+.+.++|++|+|||++|+.+++.... ..-.-.+.... .
T Consensus 16 ~~~~~g~~~~--------~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~ 79 (319)
T 2chq_A 16 LDEVVGQDEV--------IQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-E 79 (319)
T ss_dssp GGGSCSCHHH--------HHHHHTTTTTTC-------CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS-T
T ss_pred HHHHhCCHHH--------HHHHHHHHhCCC-------CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc-c
Confidence 3458899998 888888775432 233899999999999999988776411 11011111111 0
Q ss_pred CCCCCHHHHHHHHHhh--h-CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH-H-HHhcCCCCceeCC
Q 039853 101 ASDDNLNSLQVKLKSG--L-SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG-V-TSIMGTMPAYELK 175 (206)
Q Consensus 101 ~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v-~~~~~~~~~~~l~ 175 (206)
............+... + .+++.++|+|+++..+......+...+.....++.+|+||.... + .........+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~ 159 (319)
T 2chq_A 80 RGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (319)
T ss_dssp TCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECC
T ss_pred cChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEec
Confidence 0111122222222211 2 25688999999986666666777777765566777777775533 1 1222223479999
Q ss_pred CCCHHHHHHHHhhcc
Q 039853 176 KLVNDSCRLIFSQHP 190 (206)
Q Consensus 176 ~L~~~~a~~Lf~~~a 190 (206)
+++.++..+++...+
T Consensus 160 ~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 160 PVPKEAMKKRLLEIC 174 (319)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887654
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.94 E-value=1.9e-09 Score=89.27 Aligned_cols=154 Identities=9% Similarity=0.042 Sum_probs=95.3
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------------
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS------------- 89 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------- 89 (206)
.-..++||+.. ++.+..++.... ....+.|+|++|+|||++|+.+++......
T Consensus 14 ~~~~~vg~~~~--------~~~L~~~l~~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 14 TFADVVGQEHV--------LTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp STTTSCSCHHH--------HHHHHHHHHHTC------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred chhhccCcHHH--------HHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 34568999999 999998886543 235789999999999999998875442110
Q ss_pred --HHhhhCCC-----C-CCCCCCCHHHHHHHHHhh-hCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCCh
Q 039853 90 --IHNTISPE-----T-ASASDDNLNSLQVKLKSG-LSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQ 160 (206)
Q Consensus 90 --i~~~~~~~-----~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~ 160 (206)
+....... . ..........+.+.+... ..+++.++|+|+++..+...+..+...+.....+..+|++|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 11000000 0 001112223332222111 13467899999998767777777877776555666667666543
Q ss_pred H-H-HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 161 G-V-TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 161 ~-v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. + .........+++.+++.++..+++.+.+
T Consensus 160 ~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 2 2 1222223578999999999999887643
No 19
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=9.2e-09 Score=84.50 Aligned_cols=152 Identities=8% Similarity=0.004 Sum_probs=92.9
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHh-hhCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHN-TISPETASA 101 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~-~~~~~~~~~ 101 (206)
.-..++|++.. ++.+..++..... ..+.++|++|+|||++|+.+++......... .+.... ..
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~-------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~~ 98 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANL-------PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-AS 98 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTC-------CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-SS
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCC-------CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-cc
Confidence 34568999999 9999998865532 2389999999999999999887753221000 000000 01
Q ss_pred CCCCHHHHHHHHHhhh----------------CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH-HH-
Q 039853 102 SDDNLNSLQVKLKSGL----------------SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG-VT- 163 (206)
Q Consensus 102 ~~~~~~~~~~~l~~~l----------------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~- 163 (206)
+......+.+.+..+. ..++-++++|+++..+......+...+.......++|++|.... +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 99 DERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178 (353)
T ss_dssp SCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcc
Confidence 1122333322222211 13456999999986666666777777765555666777664432 11
Q ss_pred HhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 164 SIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 164 ~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
........+.+.+++.++....+...+
T Consensus 179 ~l~sR~~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 179 PLASQCSKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp HHHHHSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhccCceEEeCCCCHHHHHHHHHHHH
Confidence 111112368999999999998888754
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.83 E-value=5.2e-09 Score=85.53 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=92.6
Q ss_pred HHHHHhhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH------
Q 039853 14 EMLFKKLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV------ 87 (206)
Q Consensus 14 ~~~~~~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------ 87 (206)
++.++.-......+.||+++ .++|...|...- ..+..+.+.|+|++|.|||++++.+++....
T Consensus 9 ~~~l~~~~~~~~~L~~Re~E--------~~~i~~~L~~~i---~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~ 77 (318)
T 3te6_A 9 EESIRESLQKRELLKSQVED--------FTRIFLPIYDSL---MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKE 77 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH---HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTS
T ss_pred hhhhhhccCCccccCCHHHH--------HHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 33444433334447899999 888877765421 1124578899999999999999999876631
Q ss_pred ----HH-----------------HHhhhCCCCCCCCCCCHHHHHHHHHhh--hCCceEEEEEcCCCCCCcccHHHHHhhc
Q 039853 88 ----NS-----------------IHNTISPETASASDDNLNSLQVKLKSG--LSRKKFQLASGDMWKDKYVDWTNQRVLF 144 (206)
Q Consensus 88 ----~~-----------------i~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l 144 (206)
.. +++++..... ........+...+... -.+++++++||.++... ..+.+...+
T Consensus 78 ~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~-~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~ 154 (318)
T 3te6_A 78 LPIFDYIHIDALELAGMDALYEKIWFAISKENL-CGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFE 154 (318)
T ss_dssp SCCEEEEEEETTCCC--HHHHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHH
T ss_pred CCceEEEEEeccccCCHHHHHHHHHHHhcCCCC-CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHH
Confidence 11 5666644330 1122333344433332 24568999999998543 333333333
Q ss_pred c----cCCCCcEEEEeCCCh---H--H----HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 145 V----AVASRRKVIVTTRNQ---G--V----TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 145 ~----~~~~gs~IiiTTR~~---~--v----~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. ..++.+ ||.++... . + ...+. ...+.+.+++.++-.+++.+++
T Consensus 155 ~~~~~~~s~~~-vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 155 KWISSKNSKLS-IICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHCSSCCEE-EEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hcccccCCcEE-EEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 2 122222 33333321 1 1 11111 1368999999999999888764
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=4.9e-09 Score=83.88 Aligned_cols=156 Identities=11% Similarity=-0.001 Sum_probs=84.0
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCC------CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSE------CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTIS 95 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~ 95 (206)
..++|.+.. ++.|.+.+...... .+....+-+.|+|++|+|||+||+++++...... -...+.
T Consensus 17 ~~i~G~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 17 EDIGGLEKQ--------MQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp GGSCSCHHH--------HHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred HHhcCHHHH--------HHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 457788888 77777766331000 0001345799999999999999999876653221 001111
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC-----------CcccHHHH---Hhhcc--cCCCCcEEEEeCCC
Q 039853 96 PETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD-----------KYVDWTNQ---RVLFV--AVASRRKVIVTTRN 159 (206)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l---~~~l~--~~~~gs~IiiTTR~ 159 (206)
... ...........+.......+.+|+||+++.. +......+ ...+. ....+..||.||..
T Consensus 89 ~~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~ 165 (285)
T 3h4m_A 89 KKF---IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp CCS---TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred Hhc---cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 111 0111122222233333446689999999732 11111222 22222 12345567777765
Q ss_pred hHHHH--hcC---CCCceeCCCCCHHHHHHHHhhccC
Q 039853 160 QGVTS--IMG---TMPAYELKKLVNDSCRLIFSQHPS 191 (206)
Q Consensus 160 ~~v~~--~~~---~~~~~~l~~L~~~~a~~Lf~~~af 191 (206)
..... ... -...+.++..+.++..++|..++.
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 42211 111 123689999999999999987753
No 22
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.76 E-value=2.5e-08 Score=80.55 Aligned_cols=162 Identities=10% Similarity=0.010 Sum_probs=90.3
Q ss_pred hHHHHHHhhhccCCceeeecccchhhhHHhHHHHHHHHhCCC--------CCCCCCCeeEEEEEcCCCchHHHHHHHHhc
Q 039853 12 SIEMLFKKLAAKGLQLFARQQQIQADMKKREEGTVELILKDD--------SECNDGGLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 12 ~i~~~~~~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.++++...+.. .++|.+.. ++.|.+++.... ..........+.|+|++|+|||+||+.+++
T Consensus 21 ~~~~~~~~l~~---~i~G~~~~--------~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 21 GAKEVLEELDR---ELIGLKPV--------KDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp THHHHHHHHHH---HSSSCHHH--------HHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHH---HccChHHH--------HHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34444444432 47898888 666665443110 000122446799999999999999998776
Q ss_pred ChhHHH------H----HhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC---------CcccHHHHHhhc
Q 039853 84 DKTVNS------I----HNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD---------KYVDWTNQRVLF 144 (206)
Q Consensus 84 ~~~~~~------i----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l 144 (206)
...... + ...+.... ...........+... +..+|++|+++.. +...+..+...+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l 163 (309)
T 3syl_A 90 LLHRLGYVRKGHLVSVTRDDLVGQY---IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM 163 (309)
T ss_dssp HHHHTTSSSSCCEEEECGGGTCCSS---TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHH
T ss_pred HHHhcCCcCCCcEEEEcHHHhhhhc---ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHH
Confidence 653211 0 00000000 011112222222222 3469999999843 344455666666
Q ss_pred ccCCCCcEEEEeCCChHHHHhc--C------CCCceeCCCCCHHHHHHHHhhcc
Q 039853 145 VAVASRRKVIVTTRNQGVTSIM--G------TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 145 ~~~~~gs~IiiTTR~~~v~~~~--~------~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.....+..+|.||......... . ....+.+++++.++..+++...+
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 164 ENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp HHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 6565666777777643221110 1 11468999999999999987654
No 23
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.74 E-value=4.6e-08 Score=83.58 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=89.3
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhH---HHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHH
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKRE---EGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIH 91 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~ 91 (206)
+..++.+ .-..++|++.. + ..|...+.... .+.+.|+|++|+||||||+.+++.....+
T Consensus 16 la~r~rP~~l~~ivGq~~~--------~~~~~~L~~~i~~~~-------~~~vLL~GppGtGKTtlAr~ia~~~~~~f-- 78 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHL--------LAAGKPLPRAIEAGH-------LHSMILWGPPGTGKTTLAEVIARYANADV-- 78 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHH--------HSTTSHHHHHHHHTC-------CCEEEEECSTTSSHHHHHHHHHHHTTCEE--
T ss_pred hHHHhCCCCHHHhCCcHHH--------HhchHHHHHHHHcCC-------CcEEEEECCCCCcHHHHHHHHHHHhCCCe--
Confidence 4444444 44568898877 6 66777775543 36899999999999999999876542211
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHh----hhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHH---HH
Q 039853 92 NTISPETASASDDNLNSLQVKLKS----GLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGV---TS 164 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v---~~ 164 (206)
.... ........+...+.. ...+++.+|++|+++..+....+.+...+.. +.-.-|..||.+... ..
T Consensus 79 ---~~l~--a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 79 ---ERIS--AVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp ---EEEE--TTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHH
T ss_pred ---EEEE--eccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHH
Confidence 0000 111222322222211 2245788999999997766667777776664 222223336666431 22
Q ss_pred hcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 165 IMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 165 ~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
......++.+.+++.++...++.+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHH
Confidence 22233578999999999999988754
No 24
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=4.8e-08 Score=80.40 Aligned_cols=152 Identities=10% Similarity=-0.003 Sum_probs=88.3
Q ss_pred CCceeeecccchhhhHHhHHHHHHHH-hCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh-hHHH---HH-------
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELI-LKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK-TVNS---IH------- 91 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~---i~------- 91 (206)
-..++|++.. .+.+.+++ .... ... +.|+|++|+||||+|+.++... .... .+
T Consensus 13 ~~~~vg~~~~--------~~~l~~~~~~~~~------~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 13 LNALSHNEEL--------TNFLKSLSDQPRD------LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp GGGCCSCHHH--------HHHHHTTTTCTTC------CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred HHHhcCCHHH--------HHHHHHHHhhCCC------CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 3557888888 77777776 3322 234 8999999999999998876632 1000 00
Q ss_pred -----hhhC---C------CCCCCCCCCHHHHHHHHHhhh--------------CCceEEEEEcCCCCCCcccHHHHHhh
Q 039853 92 -----NTIS---P------ETASASDDNLNSLQVKLKSGL--------------SRKKFQLASGDMWKDKYVDWTNQRVL 143 (206)
Q Consensus 92 -----~~~~---~------~~~~~~~~~~~~~~~~l~~~l--------------~~kr~LlVlDdv~~~~~~~~~~l~~~ 143 (206)
..+. . ..............+.+.... ..++-++|+|+++..+......+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp --------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred cccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHH
Confidence 0000 0 000000111112223333222 22556999999997666667777777
Q ss_pred cccCCCCcEEEEeCCCh-HH-HHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 144 FVAVASRRKVIVTTRNQ-GV-TSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 144 l~~~~~gs~IiiTTR~~-~v-~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+.....+..+|++|.+. .+ .........+++.+++.++..+.+...+
T Consensus 158 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 158 MEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp HHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 76555677777777652 22 1222223578999999999999988654
No 25
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.70 E-value=1.5e-08 Score=75.27 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=39.4
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.-..++||+.+ ++.+.+.+.... .+.+.|+|++|+|||+||+.+++..
T Consensus 20 ~~~~~~g~~~~--------~~~l~~~l~~~~-------~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 20 KLDPVIGRDTE--------IRRAIQILSRRT-------KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CSCCCCSCHHH--------HHHHHHHHTSSS-------SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccchhhcchHH--------HHHHHHHHhCCC-------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999 999999886543 3567899999999999999887654
No 26
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.69 E-value=2.8e-08 Score=81.02 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=86.4
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..++|++.. ++.+.+++.... ....+.+.|++|+|||++|+.+++...... ..-. ..
T Consensus 24 ~~~~ivg~~~~--------~~~l~~~l~~~~------~~~~~L~~G~~G~GKT~la~~la~~l~~~~-----~~i~--~~ 82 (324)
T 3u61_B 24 TIDECILPAFD--------KETFKSITSKGK------IPHIILHSPSPGTGKTTVAKALCHDVNADM-----MFVN--GS 82 (324)
T ss_dssp STTTSCCCHHH--------HHHHHHHHHTTC------CCSEEEECSSTTSSHHHHHHHHHHHTTEEE-----EEEE--TT
T ss_pred CHHHHhCcHHH--------HHHHHHHHHcCC------CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE-----EEEc--cc
Confidence 44568999998 999999887543 236788888999999999999876542111 0000 11
Q ss_pred CCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCC-cccHHHHHhhcccCCCCcEEEEeCCChH-----HHHhcCCCCc
Q 039853 103 DDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDK-YVDWTNQRVLFVAVASRRKVIVTTRNQG-----VTSIMGTMPA 171 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IiiTTR~~~-----v~~~~~~~~~ 171 (206)
......+.+.+.+.. .+++.++++|+++..+ .+....+...+.....+..+|+||.... +... ...
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~ 159 (324)
T 3u61_B 83 DCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRV 159 (324)
T ss_dssp TCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEE
T ss_pred ccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcE
Confidence 222444444444333 2367899999999655 5556666665554445567777776533 1121 146
Q ss_pred eeCCCCCHHHH
Q 039853 172 YELKKLVNDSC 182 (206)
Q Consensus 172 ~~l~~L~~~~a 182 (206)
+++++++.++-
T Consensus 160 i~~~~~~~~e~ 170 (324)
T 3u61_B 160 ITFGQPTDEDK 170 (324)
T ss_dssp EECCCCCHHHH
T ss_pred EEeCCCCHHHH
Confidence 89999998774
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.69 E-value=8.2e-09 Score=84.62 Aligned_cols=157 Identities=13% Similarity=0.030 Sum_probs=89.2
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhh
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTI 94 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~ 94 (206)
+..++.+ .-..++|++.. ++.+..++..... .......+.|+|++|+|||+||+.+++.....++ .+
T Consensus 19 ~~~~~~p~~~~~iiG~~~~--------~~~l~~~l~~~~~--~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~--~~ 86 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESI--------KKNLNVFIAAAKK--RNECLDHILFSGPAGLGKTTLANIISYEMSANIK--TT 86 (338)
T ss_dssp ----CCCCSGGGCCSCHHH--------HHHHHHHHHHHHH--TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE--EE
T ss_pred hhhccCCCCHHHhCChHHH--------HHHHHHHHHHHHh--cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE--Ee
Confidence 3444444 44568999998 8877777754211 0123456899999999999999998655322110 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCC------------------CCcEEEEe
Q 039853 95 SPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVA------------------SRRKVIVT 156 (206)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~IiiT 156 (206)
.. ............+.. ..+..+|+||+++.........+...+.... ++..+|.+
T Consensus 87 ~~----~~~~~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 87 AA----PMIEKSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp EG----GGCCSHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred cc----hhccchhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 00 011122333333332 2356789999999666666666665554321 12345555
Q ss_pred CCC-hHHHH-hc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 157 TRN-QGVTS-IM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 157 TR~-~~v~~-~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
|.. ..+.. .. +....+.+.+++.++..+++.+.+
T Consensus 161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAA 197 (338)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHH
Confidence 443 22211 11 222478999999999999887654
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=79.24 Aligned_cols=131 Identities=15% Similarity=0.059 Sum_probs=66.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC------
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK------ 133 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------ 133 (206)
..+-+.|+|++|+|||+||+.+++......+.-................+...+.........+|++|+++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~ 117 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT 117 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC----------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcccccc
Confidence 34668899999999999999988754322100000000000011111222233333333457899999998431
Q ss_pred ------cc---cHHHHHhhcccC--CCCcEEEEeCCChHH-H-HhcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 ------YV---DWTNQRVLFVAV--ASRRKVIVTTRNQGV-T-SIMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 ------~~---~~~~l~~~l~~~--~~gs~IiiTTR~~~v-~-~~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.. .+..+...+... ..+..||.||..... . .... -...+.++..+.++..++|..++
T Consensus 118 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 118 MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190 (262)
T ss_dssp ---------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred ccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 11 122333333221 234455556654332 1 1111 12467888999999988887654
No 29
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.64 E-value=5.5e-08 Score=79.01 Aligned_cols=151 Identities=13% Similarity=0.034 Sum_probs=86.3
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCC
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASAS 102 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~ 102 (206)
.-..++|++.. ++.+..++..... .......+.|+|++|+|||+||+.+++......+ .+. . ..
T Consensus 10 ~~~~~ig~~~~--------~~~l~~~l~~~~~--~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~--~~~--~--~~ 73 (324)
T 1hqc_A 10 TLDEYIGQERL--------KQKLRVYLEAAKA--RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR--VTS--G--PA 73 (324)
T ss_dssp STTTCCSCHHH--------HHHHHHHHHHHHH--HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE--EEC--T--TT
T ss_pred cHHHhhCHHHH--------HHHHHHHHHHHHc--cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE--EEe--c--cc
Confidence 44568999888 7777776642110 0012357899999999999999998765421100 000 0 11
Q ss_pred CCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCC------------------CCcEEEEeCC-ChHHH
Q 039853 103 DDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVA------------------SRRKVIVTTR-NQGVT 163 (206)
Q Consensus 103 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~IiiTTR-~~~v~ 163 (206)
......+...+...+ .+..+|++|+++.........+...+.... ++..+|.+|. ...+.
T Consensus 74 ~~~~~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~ 152 (324)
T 1hqc_A 74 IEKPGDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152 (324)
T ss_dssp CCSHHHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCS
T ss_pred cCChHHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCC
Confidence 222333333332212 356789999998655555555554443221 2344555554 32221
Q ss_pred Hhc-CC-CCceeCCCCCHHHHHHHHhhcc
Q 039853 164 SIM-GT-MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 164 ~~~-~~-~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
... .. ...+.+.+++.++..+++...+
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~~~~ 181 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVMRDA 181 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHHHHH
Confidence 111 11 2478999999999999988764
No 30
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.1e-07 Score=78.24 Aligned_cols=148 Identities=7% Similarity=0.071 Sum_probs=90.7
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhCCCCCC
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTISPETAS 100 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~~~~~~ 100 (206)
-..++|++.. ++.|..++..... +.+.++|++|+||||+|+.++....... .+..+..
T Consensus 24 ~~~~~g~~~~--------~~~L~~~i~~g~~-------~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---- 84 (340)
T 1sxj_C 24 LDEVYGQNEV--------ITTVRKFVDEGKL-------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---- 84 (340)
T ss_dssp GGGCCSCHHH--------HHHHHHHHHTTCC-------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT----
T ss_pred HHHhcCcHHH--------HHHHHHHHhcCCC-------ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC----
Confidence 3457788777 8888887765432 2389999999999999998876642111 1111111
Q ss_pred CCCCCHHHHHHHHHhhh------CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH-H-HHhcCCCCce
Q 039853 101 ASDDNLNSLQVKLKSGL------SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG-V-TSIMGTMPAY 172 (206)
Q Consensus 101 ~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v-~~~~~~~~~~ 172 (206)
.+....+...+.+.... .+.+-++|+|+++..+....+.+...+......+.++++|.... + .........+
T Consensus 85 ~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 85 SDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp TSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 11223444443333222 23477899999986666667777776665556666776665432 1 1111222468
Q ss_pred eCCCCCHHHHHHHHhhcc
Q 039853 173 ELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 173 ~l~~L~~~~a~~Lf~~~a 190 (206)
.+.+++.++..+.+...+
T Consensus 165 ~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVL 182 (340)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred eccCCCHHHHHHHHHHHH
Confidence 899999988888776543
No 31
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.58 E-value=9.1e-08 Score=76.13 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=79.6
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDD 104 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~ 104 (206)
..++|+...++..+ +..+.+.+.+.... ....+.+.|+|++|+|||+||+++++.....+ +.-..... ....
T Consensus 33 ~~~i~~~~~~~~i~-~~~~~l~~~l~~~~----~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~-~~i~~~~~--~~g~ 104 (272)
T 1d2n_A 33 NGIIKWGDPVTRVL-DDGELLVQQTKNSD----RTPLVSVLLEGPPHSGKTALAAKIAEESNFPF-IKICSPDK--MIGF 104 (272)
T ss_dssp TCCCCCSHHHHHHH-HHHHHHHHHHHHCS----SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE-EEEECGGG--CTTC
T ss_pred cCCCCccHHHHHHH-HHHHHHHHHHhccC----CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE-EEEeCHHH--hcCC
Confidence 35677776622222 11223444443221 13567899999999999999999877532211 00000000 0111
Q ss_pred CH----HHHHHHHHhhhCCceEEEEEcCCCCC----------CcccHHHHHhhccc---CCCCcEEEEeCCChHHHHh--
Q 039853 105 NL----NSLQVKLKSGLSRKKFQLASGDMWKD----------KYVDWTNQRVLFVA---VASRRKVIVTTRNQGVTSI-- 165 (206)
Q Consensus 105 ~~----~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~IiiTTR~~~v~~~-- 165 (206)
.. ..+...+......+..+|++|+++.. ....+..+...+.. ......||.||........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 105 SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 11 22233333344467889999998632 11112223333321 2223345667766544332
Q ss_pred -cCC-CCceeCCCCCH-HHHHHHHhh
Q 039853 166 -MGT-MPAYELKKLVN-DSCRLIFSQ 188 (206)
Q Consensus 166 -~~~-~~~~~l~~L~~-~~a~~Lf~~ 188 (206)
.+. ...+.+++++. ++...++..
T Consensus 185 l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 185 MLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp CTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhcccceEEcCCCccHHHHHHHHHHh
Confidence 111 24688999988 666666654
No 32
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.58 E-value=1.1e-07 Score=81.12 Aligned_cols=123 Identities=14% Similarity=0.037 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGD 128 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 128 (206)
...+.|+|++|+||||||+.+++.....+ +...+.... .... ...+...+..+..+|++|+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~vL~IDE 202 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSM---KEGK----LNEFREKYRKKVDILLIDD 202 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHH---HTTC----HHHHHHHHTTTCSEEEEEC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHH---Hccc----HHHHHHHhcCCCCEEEEeC
Confidence 56799999999999999999887553220 111110000 0000 1122333333567999999
Q ss_pred CCCCCc--ccHHHHHhhccc-CCCCcEEEEeCCCh---------HHHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 129 MWKDKY--VDWTNQRVLFVA-VASRRKVIVTTRNQ---------GVTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 129 v~~~~~--~~~~~l~~~l~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
++.... .....+...+.. ...|..||+||.+. .+..-+....++.+++++.++..+++.+.+
T Consensus 203 i~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 985432 233344444322 23566788888752 222222222468899999999999998765
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.58 E-value=3.8e-08 Score=76.13 Aligned_cols=133 Identities=15% Similarity=0.030 Sum_probs=71.2
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhC--C
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLS--R 119 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~ 119 (206)
++.+..++... ..+.+.|+|++|+|||+||+.+++...... ... ...+.......+.+.+. .
T Consensus 40 ~~~l~~~~~~~-------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~ 103 (242)
T 3bos_A 40 IGALKSAASGD-------GVQAIYLWGPVKSGRTHLIHAACARANELE------RRS---FYIPLGIHASISTALLEGLE 103 (242)
T ss_dssp HHHHHHHHHTC-------SCSEEEEECSTTSSHHHHHHHHHHHHHHTT------CCE---EEEEGGGGGGSCGGGGTTGG
T ss_pred HHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHHHHHcC------CeE---EEEEHHHHHHHHHHHHHhcc
Confidence 55566655433 236899999999999999999876653221 000 00000000000111111 3
Q ss_pred ceEEEEEcCCCCCCccc--HHHHHhhcccC-CCCc-EEEEeCCChH---------HHHhcCCCCceeCCCCCHHHHHHHH
Q 039853 120 KKFQLASGDMWKDKYVD--WTNQRVLFVAV-ASRR-KVIVTTRNQG---------VTSIMGTMPAYELKKLVNDSCRLIF 186 (206)
Q Consensus 120 kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs-~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf 186 (206)
++.+|++||++...... ...+...+... ..+. ++|+||+... +...+.....+.+.+++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 46789999998543333 33343332211 1222 3677665321 1111111146899999999999999
Q ss_pred hhcc
Q 039853 187 SQHP 190 (206)
Q Consensus 187 ~~~a 190 (206)
...+
T Consensus 184 ~~~~ 187 (242)
T 3bos_A 184 QRRA 187 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.54 E-value=4.3e-07 Score=74.15 Aligned_cols=150 Identities=11% Similarity=-0.055 Sum_probs=82.6
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCC---CC--CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHh
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKD---DS--ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHN 92 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~---~~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~ 92 (206)
.+++|.+.. ++.|.+.+... .. .......+-+.|+|++|+|||+||+++++.....+ +..
T Consensus 18 ~di~G~~~~--------~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 18 EDVAGLEGA--------KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp GGSCSCHHH--------HHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred HHhcChHHH--------HHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 456787777 77777766210 00 00122356799999999999999999987643221 221
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcc-----------cHHHHHhhcc---cCCCCcEEEEeCC
Q 039853 93 TISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYV-----------DWTNQRVLFV---AVASRRKVIVTTR 158 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~IiiTTR 158 (206)
.... .....+...+...-..++.+|+||+++..... ....+...+. ....+..||.||.
T Consensus 90 ~~~g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 90 KWMG-------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp TTGG-------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred cccc-------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 1110 11111222222222346689999999843110 1233333332 2334555555665
Q ss_pred ChHH-----HHhcCCCCceeCCCCCHHHHHHHHhhccC
Q 039853 159 NQGV-----TSIMGTMPAYELKKLVNDSCRLIFSQHPS 191 (206)
Q Consensus 159 ~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~af 191 (206)
.... .. +-...+.++..+.++-.++|..++-
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhc
Confidence 4321 22 2224578888899999999987653
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=6e-07 Score=77.96 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=85.3
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCC---------C-CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHh
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDD---------S-ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHN 92 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~---------~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~ 92 (206)
.-..++|++.. ++.|.+|+.... . ..+.+..+.+.|+|++|+|||++|+.+++......+
T Consensus 37 ~~~dliG~~~~--------~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i-- 106 (516)
T 1sxj_A 37 NLQQVCGNKGS--------VMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL-- 106 (516)
T ss_dssp SGGGCCSCHHH--------HHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE--
T ss_pred CHHHhcCCHHH--------HHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE--
Confidence 34568999999 999999886511 0 001123578999999999999999998765421110
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHh------------------hhCCceEEEEEcCCCCCCcc---cHHHHHhhcccCCCCc
Q 039853 93 TISPETASASDDNLNSLQVKLKS------------------GLSRKKFQLASGDMWKDKYV---DWTNQRVLFVAVASRR 151 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~------------------~l~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs 151 (206)
.+.. .+..........+.. ....++.+|++|+++..... .+..+...+... ...
T Consensus 107 ~in~----s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-~~~ 181 (516)
T 1sxj_A 107 EQNA----SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-STP 181 (516)
T ss_dssp EECT----TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-SSC
T ss_pred EEeC----CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-CCC
Confidence 0000 001111111111110 11256789999999854332 234555544432 233
Q ss_pred EEEEeCCC--hHHHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 152 KVIVTTRN--QGVTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 152 ~IiiTTR~--~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.|++++.. ..+.........+.+.+++.++..+++...+
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 34444432 2222222223468999999999988887654
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.53 E-value=3.1e-06 Score=69.46 Aligned_cols=144 Identities=9% Similarity=0.004 Sum_probs=88.6
Q ss_pred HhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHH-------------H--HHhhhCCCC--CC--
Q 039853 40 KREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVN-------------S--IHNTISPET--AS-- 100 (206)
Q Consensus 40 ~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------~--i~~~~~~~~--~~-- 100 (206)
+..+.+.+.+..+. -.+.+.++|++|+|||++|+.+++..... + +...-.... ..
T Consensus 9 ~~~~~l~~~i~~~~------~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 9 PDFEKLVASYQAGR------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHTTC------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHcCC------cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 33666777665443 34689999999999999998876543110 0 111000000 00
Q ss_pred --CCCCCHHHHHHHHHhhh-----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChH-H-HHhcCCCCc
Q 039853 101 --ASDDNLNSLQVKLKSGL-----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQG-V-TSIMGTMPA 171 (206)
Q Consensus 101 --~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v-~~~~~~~~~ 171 (206)
......+...+ +.+.+ .+++-++|+|+++..+....+.+...+.....++.+|++|.+.. + .........
T Consensus 83 ~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~ 161 (334)
T 1a5t_A 83 KGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRL 161 (334)
T ss_dssp TTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhccee
Confidence 12234444443 33333 34678999999997777777778887776566666666665532 2 222233357
Q ss_pred eeCCCCCHHHHHHHHhhcc
Q 039853 172 YELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 172 ~~l~~L~~~~a~~Lf~~~a 190 (206)
+++.+++.++..+.+....
T Consensus 162 ~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC
T ss_pred eeCCCCCHHHHHHHHHHhc
Confidence 9999999999999888764
No 37
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.52 E-value=8.3e-08 Score=71.62 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-----------HHhhhCCCCCCCCCCCHHHHH
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------IHNTISPETASASDDNLNSLQ 110 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~~ 110 (206)
.+.+.+++.+-.. .....+.|+|++|+||||||+.+++...... ++..+.... .........
T Consensus 23 ~~~~~~~~~~~~~----~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 95 (180)
T 3ec2_A 23 LLTIRVFVHNFNP----EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLM---DEGKDTKFL 95 (180)
T ss_dssp HHHHHHHHHSCCG----GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHH---HHTCCSHHH
T ss_pred HHHHHHHHHhccc----cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHh---cCchHHHHH
Confidence 5555555533221 2346899999999999999999877653211 221111000 000000111
Q ss_pred HHHHhhhCCceEEEEEcCCCCCCcccHH--HHHhhcccC-CCCcEEEEeCCC
Q 039853 111 VKLKSGLSRKKFQLASGDMWKDKYVDWT--NQRVLFVAV-ASRRKVIVTTRN 159 (206)
Q Consensus 111 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IiiTTR~ 159 (206)
+.+. +.-+||||+++....+.|. .+...+... ..|..+|+||..
T Consensus 96 ~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 96 KTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1111 4568999999743333443 233333222 256678888864
No 38
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.51 E-value=1e-07 Score=68.82 Aligned_cols=112 Identities=10% Similarity=-0.107 Sum_probs=64.0
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--HHhhhCCCCCCCCC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--IHNTISPETASASD 103 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i~~~~~~~~~~~~~ 103 (206)
.++|+... ++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++...... ++-...... ..
T Consensus 2 ~iiG~s~~--------~~~~~~~~~~~a~-----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~---~~ 65 (145)
T 3n70_A 2 ELIGRSEW--------INQYRRRLQQLSE-----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD---NA 65 (145)
T ss_dssp --CCSSHH--------HHHHHHHHHHHTT-----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTT---TS
T ss_pred CceeCCHH--------HHHHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCC---cc
Confidence 46777777 6666666543221 123478999999999999999987642211 211111111 11
Q ss_pred CCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 104 DNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 104 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
... ...+... +...|++|+++..+......+...+.......++|.||..
T Consensus 66 ~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 111 1112111 2357899999977777777777766544445567776653
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.50 E-value=3.1e-07 Score=75.87 Aligned_cols=69 Identities=7% Similarity=0.052 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCC-C------------hHH-HHhcCCCCceeCCCCCHHHHHHHH
Q 039853 121 KFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTR-N------------QGV-TSIMGTMPAYELKKLVNDSCRLIF 186 (206)
Q Consensus 121 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR-~------------~~v-~~~~~~~~~~~l~~L~~~~a~~Lf 186 (206)
+.+|++|+++..+...+..+...+...... .++++|. . ..+ .........+.+++++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 359999999977667777777666544433 3444332 1 001 111122245899999999999999
Q ss_pred hhcc
Q 039853 187 SQHP 190 (206)
Q Consensus 187 ~~~a 190 (206)
...+
T Consensus 269 ~~~~ 272 (368)
T 3uk6_A 269 RIRC 272 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.49 E-value=1.7e-07 Score=76.36 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=66.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDM 129 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 129 (206)
....+.|+|++|+|||+||+.+++...... +...+.... ...... .+...+. +..+|++|++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~-~~~vL~iDEi 107 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHL---KKGTIN----EFRNMYK-SVDLLLLDDV 107 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHH---HHTCHH----HHHHHHH-TCSEEEEECG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH---HcCcHH----HHHHHhc-CCCEEEEcCc
Confidence 346789999999999999999887552211 111110000 000111 1111221 3579999999
Q ss_pred CCCCc--ccHHHHHhhccc-CCCCcEEEEeCCCh---------HHHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 130 WKDKY--VDWTNQRVLFVA-VASRRKVIVTTRNQ---------GVTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 130 ~~~~~--~~~~~l~~~l~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+.... .....+...+.. ...|..||+||.+. .+..-+.....+.+++ +.++..+++...+
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHH
Confidence 85433 222333333321 12455677776532 1222222224689999 9999999888765
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.48 E-value=4.9e-07 Score=74.94 Aligned_cols=150 Identities=11% Similarity=-0.051 Sum_probs=82.1
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCC----CC-CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HH
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKD----DS-ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IH 91 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~----~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~ 91 (206)
-.+++|.+.. ++.|.+.+... .. .......+-+.|+|++|+|||+||+++++.....+ +.
T Consensus 50 ~~di~G~~~~--------~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 50 WEDVAGLEGA--------KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp GGGSCCGGGH--------HHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred HHHhCCHHHH--------HHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3457788887 77777766311 00 00112345688999999999999999987653222 22
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcc-----------cHHHHHhhccc---CCCCcEEEEeC
Q 039853 92 NTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYV-----------DWTNQRVLFVA---VASRRKVIVTT 157 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~IiiTT 157 (206)
.... ......+...+...-..++.+|+||+++..... ....+...+.. ...+..||.||
T Consensus 122 ~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at 194 (355)
T 2qp9_X 122 SKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGAT 194 (355)
T ss_dssp SCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_pred hhhc-------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeec
Confidence 2111 111222222222233356789999999843211 12233333321 23344455566
Q ss_pred CChH-----HHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 158 RNQG-----VTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 158 R~~~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.... +.. +-...+.+...+.++-.++|..+.
T Consensus 195 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 195 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp SCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHH
Confidence 5432 222 233467888889998888888764
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.47 E-value=2.3e-07 Score=76.92 Aligned_cols=154 Identities=9% Similarity=-0.022 Sum_probs=78.6
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhC----CCCC-CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILK----DDSE-CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISP 96 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~----~~~~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~ 96 (206)
..++|++.. ++.|.+.+.. .... ......+.+.|+|++|+|||+||+++++.....++ ...+..
T Consensus 84 ~~i~G~~~~--------~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 84 EDIAGVEFA--------KATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp GGSCSCHHH--------HHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred HHhCChHHH--------HHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 457888887 7777766532 1100 00123568999999999999999998765422210 001110
Q ss_pred CCCCCCCCCHHHHHHHH-HhhhCCceEEEEEcCCCCCCc-----------ccHHHHHhhcccC----CCCcEEEEeCCCh
Q 039853 97 ETASASDDNLNSLQVKL-KSGLSRKKFQLASGDMWKDKY-----------VDWTNQRVLFVAV----ASRRKVIVTTRNQ 160 (206)
Q Consensus 97 ~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~~gs~IiiTTR~~ 160 (206)
.. ..........+ ...-..++.+|+||+++.... ..+..+...+... ..+..||.||...
T Consensus 156 ~~----~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 156 KW----VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp SS----TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred cc----cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 00 01111222222 222234678999999862210 1122333333311 2233445455442
Q ss_pred -HHHH-hc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 161 -GVTS-IM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 161 -~v~~-~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.+.. .. +....+.+...+.++..+++...+
T Consensus 232 ~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 232 QEIDEAARRRLVKRLYIPLPEASARKQIVINLM 264 (357)
T ss_dssp GGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred hhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH
Confidence 2211 11 222367888888888888887654
No 43
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.47 E-value=2.7e-07 Score=84.74 Aligned_cols=149 Identities=8% Similarity=0.055 Sum_probs=78.2
Q ss_pred cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHh-----hh
Q 039853 23 KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHN-----TI 94 (206)
Q Consensus 23 ~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~-----~~ 94 (206)
.-..++||+.+ ++.+++.|..... .-+.++|++|+|||+||+.+++...... .+. .+
T Consensus 168 ~ld~viGr~~~--------i~~l~~~l~~~~~-------~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 168 KLDPVIGRDEE--------IRRVIQILLRRTK-------NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp CSCCCCSCHHH--------HHHHHHHHHCSSC-------CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCcccCCcHHH--------HHHHHHHHhcCCC-------CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 34568999999 9999998866443 4578999999999999999887652210 000 00
Q ss_pred CCCCC---CCCCCCHHHHHHHHHhhh-C-CceEEEEEcCCCCCC--------cccHHHHHhhcccCCCCcEEEEeCCChH
Q 039853 95 SPETA---SASDDNLNSLQVKLKSGL-S-RKKFQLASGDMWKDK--------YVDWTNQRVLFVAVASRRKVIVTTRNQG 161 (206)
Q Consensus 95 ~~~~~---~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IiiTTR~~~ 161 (206)
..... .....+.......+.+.+ . +++.+|++|+++... .+....++..+.. + +..+|.+|....
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I~at~~~~ 310 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGATTLDE 310 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEEEEECHHH
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEEEecCchH
Confidence 00000 000111222222222222 2 367899999998432 1112224444432 2 223444444332
Q ss_pred HHH------hcCCCCceeCCCCCHHHHHHHHhh
Q 039853 162 VTS------IMGTMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 162 v~~------~~~~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
... .......+.+++++.++..+++..
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRG 343 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHh
Confidence 211 112224689999999999998864
No 44
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.44 E-value=4.2e-07 Score=73.30 Aligned_cols=153 Identities=10% Similarity=0.090 Sum_probs=83.6
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCC--CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--------------
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDS--ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------------- 89 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------- 89 (206)
.++|+... ++.+...+..... .........+.++|++|+|||++|+.++.......
T Consensus 18 ~i~G~~~~--------~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 18 RVVGQDEA--------IRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TCCSCHHH--------HHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hcCCHHHH--------HHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 47898888 7777666644210 00112345899999999999999998876542111
Q ss_pred --HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEEEe
Q 039853 90 --IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVIVT 156 (206)
Q Consensus 90 --i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiT 156 (206)
....++.............+...+.. ....+++||+++..+...+..+...+.... +.+.+|.|
T Consensus 90 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~t 166 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMT 166 (311)
T ss_dssp THHHHHHCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEE
T ss_pred ccHHHhcCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEe
Confidence 11111111100000000122222221 234689999998777767777766654321 24446666
Q ss_pred CCCh---------------HH--------H-----HhcCC-CCceeCCCCCHHHHHHHHhhc
Q 039853 157 TRNQ---------------GV--------T-----SIMGT-MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 157 TR~~---------------~v--------~-----~~~~~-~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
|... .+ . ..... ...+.+.+++.++...++...
T Consensus 167 tn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 167 SNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp ESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred cccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 6551 10 1 11112 246778889988888887653
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.44 E-value=7.2e-07 Score=72.16 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=70.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD 132 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 132 (206)
..+.+.|+|++|+|||+||+++++.....+ +........ ...+...+.......+.++++|+++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l 120 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES-------EANVREIFDKARQAAPCVLFFDELDSI 120 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch-------HHHHHHHHHHHHhcCCeEEEEEChHHH
Confidence 346899999999999999999987643211 332221111 112223333333446789999999731
Q ss_pred C--------------cccHHHHHhhcccC--CCCcEEEEeCCChH-HHH-hcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 133 K--------------YVDWTNQRVLFVAV--ASRRKVIVTTRNQG-VTS-IMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 133 ~--------------~~~~~~l~~~l~~~--~~gs~IiiTTR~~~-v~~-~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. ......+...+... ..+..||.||.... +.. ..+ -...+.++..+.++-.++|..+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp HHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred hhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 0 01123444444321 23445666665443 211 122 22468899899988888887654
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.42 E-value=6e-07 Score=81.32 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=83.0
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhh--h---C
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNT--I---S 95 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~--~---~ 95 (206)
-..++||+.+ ++.+.+.|..... .-+.|+|.+|+|||++|+.+++...... .+.. + .
T Consensus 185 ~d~~iGr~~~--------i~~l~~~l~~~~~-------~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 185 IDPLIGREKE--------LERAIQVLCRRRK-------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp SCCCCSCHHH--------HHHHHHHHTSSSS-------CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCccCCHHH--------HHHHHHHHhccCC-------CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3468899999 9999998865433 5578999999999999999887542111 0000 0 0
Q ss_pred CCC--C-CCCCCCHHHHHHHHHhhh-CCceEEEEEcCCCCCC--------cccHHHHHhhcccCCCCcEEEEeCCChHHH
Q 039853 96 PET--A-SASDDNLNSLQVKLKSGL-SRKKFQLASGDMWKDK--------YVDWTNQRVLFVAVASRRKVIVTTRNQGVT 163 (206)
Q Consensus 96 ~~~--~-~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~ 163 (206)
... . .............+.+.+ ..++.+|++|+++... ......+...+... .+..+|.+|......
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFS 328 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHh
Confidence 000 0 011122333333333333 3457899999998430 11112222222222 233455555544332
Q ss_pred HhcC-------CCCceeCCCCCHHHHHHHHhhc
Q 039853 164 SIMG-------TMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 164 ~~~~-------~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
.... ....+.+++.+.++..+++...
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 1111 1135889999999988888653
No 47
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=2.1e-06 Score=69.76 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=87.8
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChh---HHH-HHhhhCCCCCCCCCCCHHHHHHHHHhhh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKT---VNS-IHNTISPETASASDDNLNSLQVKLKSGL 117 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~l 117 (206)
++.|.+.+.... .+.+.++|++|.|||++|..+.+... ..+ -+..+... ......+...+ +.+..
T Consensus 6 ~~~L~~~i~~~~-------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~ir~-li~~~ 74 (305)
T 2gno_A 6 LETLKRIIEKSE-------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDIRT-IKDFL 74 (305)
T ss_dssp HHHHHHHHHTCS-------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHHHH-HHHHH
T ss_pred HHHHHHHHHCCC-------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHHHH-HHHHH
Confidence 666777665442 47999999999999999998875310 000 00001100 11234444444 33333
Q ss_pred -----CCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC-hHHHHhcCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 118 -----SRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN-QGVTSIMGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 118 -----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.+++-++|+|+++..+....+.++..+....+.+.+|++|.+ ..+...+... .+++.+++.++..+.+.+..
T Consensus 75 ~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 75 NYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred hhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 245678999999987778888888888766667766666544 3333333333 89999999999999987764
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=3.8e-07 Score=69.12 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++.+.+++..... ......+.|+|++|+|||+||+.+++..
T Consensus 38 ~~~~~~~~~~~~~---~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 38 IRFAERFVAEYEP---GKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHHHHHHHHHCCS---SCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh---ccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5566666654432 1122688999999999999999988755
No 49
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.35 E-value=9.8e-07 Score=70.91 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=79.4
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCC--C-CC----CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHH---Hhhh
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKD--D-SE----CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTI 94 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~--~-~~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~ 94 (206)
..++|++.. ++.+...+... . .. ........+.++|++|+|||++|+.+++......+ ...+
T Consensus 15 ~~i~G~~~~--------~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 15 QHIIGQADA--------KRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp TTCCSCHHH--------HHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred hhcCChHHH--------HHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 347899988 77777766431 0 00 00012356889999999999999998765422110 0001
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhh----C--CceEEEEEcCCCCCCccc------------HHHHHhhcccC---------
Q 039853 95 SPETASASDDNLNSLQVKLKSGL----S--RKKFQLASGDMWKDKYVD------------WTNQRVLFVAV--------- 147 (206)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~l----~--~kr~LlVlDdv~~~~~~~------------~~~l~~~l~~~--------- 147 (206)
.... ....+.......+.... . +.+.+|+||+++...... ...+...+...
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 87 TEVG--YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp SSCC--SGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred ccCC--ccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 1000 00011112222222211 1 236799999998544333 44454444321
Q ss_pred -CCCcEEEEeC----CCh-HH-HHhcC-CCCceeCCCCCHHHHHHHHhh
Q 039853 148 -ASRRKVIVTT----RNQ-GV-TSIMG-TMPAYELKKLVNDSCRLIFSQ 188 (206)
Q Consensus 148 -~~gs~IiiTT----R~~-~v-~~~~~-~~~~~~l~~L~~~~a~~Lf~~ 188 (206)
..+..+|.|+ ... .+ ..... -...+.+++++.++..+++..
T Consensus 165 ~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 1234445453 121 11 11111 123589999999999998885
No 50
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.35 E-value=2.1e-06 Score=70.20 Aligned_cols=131 Identities=12% Similarity=-0.039 Sum_probs=67.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh-hHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC-----
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK-TVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK----- 133 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----- 133 (206)
..+-+.|+|++|+|||+||+++++.. ...++.-....-...........+...+...-..++.+|++|+++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~ 123 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc
Confidence 34789999999999999999988754 111100000000000011122223333333334567899999998431
Q ss_pred --ccc----HHHHHhhccc---CCCCcEEEEeCCChH-HHH-h-cCCCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 --YVD----WTNQRVLFVA---VASRRKVIVTTRNQG-VTS-I-MGTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 --~~~----~~~l~~~l~~---~~~gs~IiiTTR~~~-v~~-~-~~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
... ...+...+.. ...+..||.||.... +.. . -+-...+.++..+.++..++|..+.
T Consensus 124 ~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 124 NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH
Confidence 011 1223333322 123444444554321 111 1 1223467888888888888887764
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.33 E-value=7.4e-07 Score=71.56 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=77.5
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCC----C-CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCC
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDD----S-ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPET 98 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~----~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~ 98 (206)
-..++|++.. ++.|.+++.... . .......+.+.|+|++|+|||+||+.++......++ .+....
T Consensus 20 ~~~i~G~~~~--------~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~--~i~~~~ 89 (297)
T 3b9p_A 20 WTDIAGQDVA--------KQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL--NISAAS 89 (297)
T ss_dssp GGGSCCCHHH--------HHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE--EEESTT
T ss_pred HHHhCChHHH--------HHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE--EeeHHH
Confidence 3467888888 777777663210 0 000113468999999999999999998765432110 000000
Q ss_pred -CCCCCCCHHHHHHH-HHhhhCCceEEEEEcCCCCCCcc-----------cHHHHHhhc---ccC--CCCcEEEEeCCCh
Q 039853 99 -ASASDDNLNSLQVK-LKSGLSRKKFQLASGDMWKDKYV-----------DWTNQRVLF---VAV--ASRRKVIVTTRNQ 160 (206)
Q Consensus 99 -~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l---~~~--~~gs~IiiTTR~~ 160 (206)
.............. +......++.+|++|+++..... ....+...+ +.. +.+..||.||...
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 00011122222222 22233356789999999743111 111222222 211 1234455566543
Q ss_pred H-----HHHhcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 161 G-----VTSIMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 161 ~-----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
. +..- ....+.+...+.++...++..+
T Consensus 170 ~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 170 QELDEAALRR--FTKRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp GGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHH
T ss_pred hhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHH
Confidence 2 2221 2245677777777777777654
No 52
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=73.66 Aligned_cols=158 Identities=9% Similarity=0.021 Sum_probs=77.4
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhC----CCC-CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILK----DDS-ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETA 99 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~----~~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~ 99 (206)
..++|++.. ++.|.+++.. ... .......+-+.|+|++|+|||+||+++++.....++.-.......
T Consensus 115 ~~iiG~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 115 DDIAGQDLA--------KQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp GGSCSCHHH--------HHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred HHhCCHHHH--------HHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 357888887 7777776622 110 000113468999999999999999998765432210000000000
Q ss_pred CCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC-----------cccHHHHHhhcc---cC-CCCcEEEEeCCCh-HHH
Q 039853 100 SASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK-----------YVDWTNQRVLFV---AV-ASRRKVIVTTRNQ-GVT 163 (206)
Q Consensus 100 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~---~~-~~gs~IiiTTR~~-~v~ 163 (206)
.........+...+...-.....+|+||+++... ......+...+. .. .....||.||... .+.
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 0001112222222222223456799999997320 011112222222 11 2233444455432 221
Q ss_pred H-hc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 164 S-IM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 164 ~-~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. .. +....+.+...+.++..+++...+
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHH
Confidence 1 11 222357888889999988887664
No 53
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.31 E-value=3.2e-07 Score=66.09 Aligned_cols=109 Identities=15% Similarity=0.045 Sum_probs=59.7
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDD 104 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~ 104 (206)
..++|+... ++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++... . -+. .+..
T Consensus 4 ~~~iG~s~~--------~~~l~~~~~~~~~-----~~~~vll~G~~GtGKt~lA~~i~~~~~-~----~~~-----~~~~ 60 (143)
T 3co5_A 4 FDKLGNSAA--------IQEMNREVEAAAK-----RTSPVFLTGEAGSPFETVARYFHKNGT-P----WVS-----PARV 60 (143)
T ss_dssp ----CCCHH--------HHHHHHHHHHHHT-----CSSCEEEEEETTCCHHHHHGGGCCTTS-C----EEC-----CSST
T ss_pred cCceeCCHH--------HHHHHHHHHHHhC-----CCCcEEEECCCCccHHHHHHHHHHhCC-C----eEE-----echh
Confidence 346788777 5555555532111 113478999999999999999887653 0 000 0111
Q ss_pred CHH-HHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccC-CCCcEEEEeCC
Q 039853 105 NLN-SLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAV-ASRRKVIVTTR 158 (206)
Q Consensus 105 ~~~-~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IiiTTR 158 (206)
... .....+.+.. +.-.+++|+++..+.+....+...+... ..+.++|.||.
T Consensus 61 ~~~~~~~~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 61 EYLIDMPMELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp THHHHCHHHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred hCChHhhhhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 111 1111122221 2357889999976666666666655543 34456777664
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.29 E-value=7e-07 Score=77.07 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=83.7
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCC--C----CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HH
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDS--E----CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IH 91 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~--~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~ 91 (206)
..++|.+.. +++|.+++..... . .+....+-+.|+|++|.|||+||+++++.....+ +.
T Consensus 204 ~~i~G~~~~--------~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 204 DDIGGCRKQ--------LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp GGCCSCHHH--------HHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred HHcCCHHHH--------HHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 357788887 7777666542100 0 0011345799999999999999999876542221 22
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCc-----------ccHHHHHhhcccC--CCCcEEEEeCC
Q 039853 92 NTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKY-----------VDWTNQRVLFVAV--ASRRKVIVTTR 158 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~IiiTTR 158 (206)
..+. ......+...+.....+++.+|+||+++.... .....|...+... ..+..||.||.
T Consensus 276 ~~~~-------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn 348 (489)
T 3hu3_A 276 SKLA-------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (489)
T ss_dssp TSCT-------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEES
T ss_pred hhhc-------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecC
Confidence 1111 11122333344444456678999999852111 1223344444322 23344555655
Q ss_pred ChH-HHHhc----CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 159 NQG-VTSIM----GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 159 ~~~-v~~~~----~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
... +.... .-...+.+...+.++-.++|..++
T Consensus 349 ~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp CGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred CccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 432 22211 112368899999999999998775
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.28 E-value=4.9e-07 Score=77.66 Aligned_cols=143 Identities=11% Similarity=0.067 Sum_probs=76.4
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH----------HHhh
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS----------IHNT 93 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------i~~~ 93 (206)
-..++||+.+ ++.+...|..... .-+.|+|++|+|||+||+.+++...... +.-.
T Consensus 179 ld~iiGr~~~--------i~~l~~~l~r~~~-------~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 179 LDPVIGRSKE--------IQRVIEVLSRRTK-------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCCCCCCHHH--------HHHHHHHHHCSSS-------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCccCcHHH--------HHHHHHHHhccCC-------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3468999999 9999998866433 4568999999999999998876641100 0000
Q ss_pred hCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHH-------hc
Q 039853 94 ISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTS-------IM 166 (206)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~-------~~ 166 (206)
+.....+..... +...+...-..++.+|++| . +.+....++..+.. + ..++|.+|....... ..
T Consensus 244 ~~~~~~g~~e~~---~~~~~~~~~~~~~~iLfiD--~--~~~a~~~L~~~L~~-g-~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 244 MGTKYRGEFEDR---LKKVMDEIRQAGNIILFID--A--AIDASNILKPSLAR-G-ELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ---------CTT---HHHHHHHHHTCCCCEEEEC--C----------CCCTTS-S-SCEEEEECCTTTTHHHHTTCSHHH
T ss_pred CCccccchHHHH---HHHHHHHHHhcCCeEEEEe--C--chhHHHHHHHhhcC-C-CEEEEecCCHHHHHHHhhcCHHHH
Confidence 000000000011 1222222223567889999 2 33333344444432 1 234554444332111 11
Q ss_pred CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 167 GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 167 ~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
....++.+++.+.++..+++...+
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 122468999999999999998654
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.25 E-value=1.7e-07 Score=74.26 Aligned_cols=122 Identities=12% Similarity=0.045 Sum_probs=63.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKY 134 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~ 134 (206)
+-+.|+|++|+|||+||+.+++...... +........ ......+ +.........+|++|+++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~---~~~a~~~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG----ASRVRDL---FETAKKQAPSIIFIDEIDAIGK 117 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSC----SSSSSTT---HHHHHHSCSCEEEESCGGGTTC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchH----HHHHHHH---HHHHHhcCCeEEEEeChhhhcc
Confidence 3478999999999999999887543221 111110000 0111111 1222223568999999974321
Q ss_pred c---------------cHHHHHhhcccC---CCCcEEEEeCCChHH-H-HhcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 135 V---------------DWTNQRVLFVAV---ASRRKVIVTTRNQGV-T-SIMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 135 ~---------------~~~~l~~~l~~~---~~gs~IiiTTR~~~v-~-~~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. .+..+...+... .....||.||..... . .... -...+.++..+.++-.+++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 118 SRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp ----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1 122333333211 122346666655432 1 1111 12457888888888888887654
No 57
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.25 E-value=6.3e-07 Score=70.89 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=31.6
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++|+... +..+.+.+..-.. ....+.|+|.+|+|||+||+.+++..
T Consensus 7 ~~ig~~~~--------~~~~~~~~~~~~~-----~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANS--------FLEVLEQVSHLAP-----LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHH--------HHHHHHHHHHHTT-----SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHH--------HHHHHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 46788777 6666655543221 12457899999999999999988664
No 58
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.20 E-value=1.1e-05 Score=65.77 Aligned_cols=152 Identities=9% Similarity=-0.027 Sum_probs=84.4
Q ss_pred HHHhhhc-cCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhh
Q 039853 16 LFKKLAA-KGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTI 94 (206)
Q Consensus 16 ~~~~l~~-~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~ 94 (206)
.+.++.+ ....++|++.. ++.+...+.... -+.++|++|+|||+||+.+++....... .+
T Consensus 17 ~~~~~~~~~~~~i~g~~~~--------~~~l~~~l~~~~---------~vll~G~pGtGKT~la~~la~~~~~~~~--~i 77 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYM--------INRLLIGICTGG---------HILLEGVPGLAKTLSVNTLAKTMDLDFH--RI 77 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHH--------HHHHHHHHHHTC---------CEEEESCCCHHHHHHHHHHHHHTTCCEE--EE
T ss_pred HHHHHHHHhccceeCcHHH--------HHHHHHHHHcCC---------eEEEECCCCCcHHHHHHHHHHHhCCCeE--EE
Confidence 3334433 45678999998 888888876643 4889999999999999988664321100 00
Q ss_pred CCCCCCCCCCCHHHHHHHH-Hh-----h-hC-C--ceEEEEEcCCCCCCcccHHHHHhhccc-----------CCCCcEE
Q 039853 95 SPETASASDDNLNSLQVKL-KS-----G-LS-R--KKFQLASGDMWKDKYVDWTNQRVLFVA-----------VASRRKV 153 (206)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l-~~-----~-l~-~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~I 153 (206)
.. ........+.... .. + +. + ...++++|+++..+......+...+.. ......|
T Consensus 78 ~~----~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 78 QF----TPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EC----CTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ec----CCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 00 0001111111000 00 0 00 0 125899999986666666555544432 1234445
Q ss_pred EEeCCChH------H-HHhcCCCC-ceeCCCCCHHHHHHHHhhcc
Q 039853 154 IVTTRNQG------V-TSIMGTMP-AYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 154 iiTTR~~~------v-~~~~~~~~-~~~l~~L~~~~a~~Lf~~~a 190 (206)
+.|+.... + ........ .+.+++.+.++-.+++.+.+
T Consensus 154 iat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHH
T ss_pred EEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcc
Confidence 55555221 1 11111222 48899999999999988764
No 59
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.17 E-value=8.6e-06 Score=69.42 Aligned_cols=151 Identities=13% Similarity=-0.001 Sum_probs=78.0
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhC----CCC-CCCCCCeeEEEEEcCCCchHHHHHHHHhcCh-hHHH-------HH
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILK----DDS-ECNDGGLSVTPVIGMGGSGNTTLALPVYNDK-TVNS-------IH 91 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~----~~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~-------i~ 91 (206)
.+++|.+.. ++.|.+.+.. ... .......+-+.|+|++|+|||+||+++++.. ...+ +.
T Consensus 134 ~di~G~~~~--------k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 134 SDVAGLEGA--------KEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp GGSCSCHHH--------HHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred HHhcCHHHH--------HHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 346677776 7777766521 110 0001234789999999999999999988754 2111 11
Q ss_pred hhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCc-------c----cHHHHHhhccc---CCCCcEEEEeC
Q 039853 92 NTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKY-------V----DWTNQRVLFVA---VASRRKVIVTT 157 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~---~~~gs~IiiTT 157 (206)
...... .......+ +...-...+.+|+||+++.... . ....+...+.. ...+..||.||
T Consensus 206 ~~~~g~----~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~at 278 (444)
T 2zan_A 206 SKWLGE----SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278 (444)
T ss_dssp ----------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEE
T ss_pred hhhcch----HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecC
Confidence 111110 11112222 2222234678999999984311 1 11223333322 12344555566
Q ss_pred CChHH-H-Hhc-CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 158 RNQGV-T-SIM-GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 158 R~~~v-~-~~~-~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
..... . ... +....+.++..+.++...+|..+.
T Consensus 279 n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 279 NIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp SCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH
Confidence 54321 1 111 222467788888888888887764
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.15 E-value=2.5e-06 Score=77.31 Aligned_cols=143 Identities=11% Similarity=0.052 Sum_probs=77.8
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHh-------h
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHN-------T 93 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~-------~ 93 (206)
-..++||+.+ ++.+...|..... .-+.++|++|+|||++|+.+++...... .+. .
T Consensus 179 ld~iiG~~~~--------i~~l~~~l~~~~~-------~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 179 LDPVIGRSKE--------IQRVIEVLSRRTK-------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCCCCCCHHH--------HHHHHHHHHCSSS-------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCccCchHH--------HHHHHHHHhCCCC-------CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 3468999999 9999999876443 4478999999999999998876641100 000 0
Q ss_pred hCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHHh-------c
Q 039853 94 ISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTSI-------M 166 (206)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~-------~ 166 (206)
++... .......+...+......++.+|++| . ..+....++..+. ....++|.+|........ .
T Consensus 244 ~g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD--~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 244 MGTKY---RGEFEDRLKKVMDEIRQAGNIILFID--A--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ccccc---cchHHHHHHHHHHHHHhcCCEEEEEc--C--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 00000 00001122223333334678899999 2 3333333444443 123345555544332111 1
Q ss_pred CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 167 GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 167 ~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+....+.++..+.++..+++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998543
No 61
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=5.1e-06 Score=69.75 Aligned_cols=128 Identities=11% Similarity=0.022 Sum_probs=70.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC---
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK--- 133 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--- 133 (206)
.++-+.++|+||.|||.||+++++.....++ ...+.... -......+.+.+...-...+++|.+|+++..-
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~---vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R 257 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY---IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR 257 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS---TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSC
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc---cchHHHHHHHHHHHHHHhCCceEeeecchhhccCC
Confidence 4577999999999999999999887644331 01111111 11112222232333334568999999998431
Q ss_pred -----cc------cHHHHHhhccc--CCCCcEEEEeCCChHH-HH-hc---CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 -----YV------DWTNQRVLFVA--VASRRKVIVTTRNQGV-TS-IM---GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 -----~~------~~~~l~~~l~~--~~~gs~IiiTTR~~~v-~~-~~---~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.. ....++..+.. ...+-.||.||..... -. .. +-...+.++.-+.+.-.++|+.+.
T Consensus 258 ~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 258 VEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp SCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 00 12223333332 2334345556644322 11 12 223578888888888888887654
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.14 E-value=2.6e-06 Score=69.06 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=32.9
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.++|+... +..+.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 3 ~iig~s~~--------~~~~~~~~~~~a~-----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSSPA--------MQHLLNEIAMVAP-----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCSHH--------HHHHHHHHHHHCS-----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECCHH--------HHHHHHHHHHHhC-----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 46788777 6666665543221 2245789999999999999998763
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=4.9e-06 Score=65.40 Aligned_cols=128 Identities=13% Similarity=0.007 Sum_probs=65.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCC--CCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCc----
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPET--ASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKY---- 134 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---- 134 (206)
.+-+.|+|++|+||||||+.+++......+ .+.... ..........+...+.........++++|+++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~ 122 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF--TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEE--EECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCST
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEE--EEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCC
Confidence 345889999999999999998765421110 011110 000112233344444444455678999999852111
Q ss_pred ----------ccHHHHHhhccc--CCCCcEEEEeCCChH-HHHh-cC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 135 ----------VDWTNQRVLFVA--VASRRKVIVTTRNQG-VTSI-MG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 135 ----------~~~~~l~~~l~~--~~~gs~IiiTTR~~~-v~~~-~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.....+...+.. ...+..||.||.... +... .. -...+.+...+.++-.+++..+.
T Consensus 123 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 123 GLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 112223322221 123445566665433 2111 11 12357777778777777776543
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.09 E-value=6.8e-06 Score=66.19 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..++.+.++|++|+|||+||+++++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999887653
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.03 E-value=2.5e-05 Score=67.54 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=42.4
Q ss_pred hhHHHHHHhhhccCCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 11 VSIEMLFKKLAAKGLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 11 ~~i~~~~~~l~~~~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.+..+...+. ..++|++.. ++.+...+.... -+.|+|++|+|||+||+.+++..
T Consensus 11 ~~~~~l~~~l~---~~ivGq~~~--------i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 11 ERISRLSSSLE---KGLYERSHA--------IRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHH---TTCSSCHHH--------HHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHH---hhhHHHHHH--------HHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHHH
Confidence 34455555544 558999999 888888776654 58999999999999999988754
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.4e-05 Score=67.82 Aligned_cols=129 Identities=13% Similarity=0.033 Sum_probs=70.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHHHH---hhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC--
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIH---NTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK-- 133 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-- 133 (206)
..++-|.++|+||.|||.||+++++.....++. ..+.... .......+...+...-...+++|++|+++..-
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~---~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~ 289 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY---IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGR 289 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS---SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc---chHHHHHHHHHHHHHHhcCCceeeeecccccccc
Confidence 356889999999999999999998876543311 0111111 11111222222333334578999999998420
Q ss_pred ----c---c-----cHHHHHhhccc--CCCCcEEEEeCCChHHH-Hh-cCC---CCceeCCCCCHHHHHHHHhhcc
Q 039853 134 ----Y---V-----DWTNQRVLFVA--VASRRKVIVTTRNQGVT-SI-MGT---MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 ----~---~-----~~~~l~~~l~~--~~~gs~IiiTTR~~~v~-~~-~~~---~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
. + .+..++..+.. ...+..||.||...... .. .++ ...+.++.-+.+.-.++|+.+.
T Consensus 290 R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 290 RFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp CSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 0 0 12234444432 22344566666544322 11 222 1357787777777777777553
No 67
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.02 E-value=2.1e-05 Score=71.49 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=72.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..++-|.++|++|.|||+||+++++...... ++... .......+.+.+.......+++|++|+++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~-------~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC-------TTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc-------chHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 4567899999999999999999998874433 22221 111223344444455566789999999974
Q ss_pred CC-------cc----cHHHHHhhcccC--CCCcEEEEeCCCh-HHHHhcC----CCCceeCCCCCHHHHHHHHhhcc
Q 039853 132 DK-------YV----DWTNQRVLFVAV--ASRRKVIVTTRNQ-GVTSIMG----TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 132 ~~-------~~----~~~~l~~~l~~~--~~gs~IiiTTR~~-~v~~~~~----~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.- .+ ...++...+... ..+-.||.||... .+-..+. -...+.++..+.++-.++|+.+.
T Consensus 309 l~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 309 IAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred cccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 31 01 122233333222 1233344455443 3322221 12467888888888888887664
No 68
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=7.4e-06 Score=69.78 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=69.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC---
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK--- 133 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--- 133 (206)
.++-|.++|++|.|||.||+++++.....++ ...+.... -......+...+...-...+++|++|+++..-
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~---vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R 318 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY---VGEGARMVRELFEMARTKKACIIFFDEIDAVGGAR 318 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS---SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCC
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc---CCHHHHHHHHHHHHHHhcCCceEeecccccccccc
Confidence 5688999999999999999999877644331 01111111 11112222333333334578999999998431
Q ss_pred ---cc--------cHHHHHhhcccC--CCCcEEEEeCCChH-HHH-hcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 ---YV--------DWTNQRVLFVAV--ASRRKVIVTTRNQG-VTS-IMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 ---~~--------~~~~l~~~l~~~--~~gs~IiiTTR~~~-v~~-~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.. ....++..+... ..+-.||.||.... +-. ..+ -...+.++..+.++-.++|+.+.
T Consensus 319 ~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 319 FDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp SSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred cCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 00 112233333322 23334455664432 211 122 23467888888888888887654
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.01 E-value=6.4e-06 Score=70.79 Aligned_cols=126 Identities=10% Similarity=0.009 Sum_probs=67.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCc----
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKY---- 134 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---- 134 (206)
+-+.|+|++|.|||+||++++......++ ...+.... ...........+.......+++|+||+++....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~---~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF---VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC---TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH---hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 45889999999999999999875432210 00000000 001112233334444456789999999974311
Q ss_pred ----------ccHHHHHhhccc--CCCCcEEEEeCCChHHHH--hcCC---CCceeCCCCCHHHHHHHHhhcc
Q 039853 135 ----------VDWTNQRVLFVA--VASRRKVIVTTRNQGVTS--IMGT---MPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 135 ----------~~~~~l~~~l~~--~~~gs~IiiTTR~~~v~~--~~~~---~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
..+..+...+.. ...+..||.||....... ..++ ...+.++..+.++-.++|..++
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 122333333321 123445666666544321 2221 1367888888777777776554
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.00 E-value=8.5e-06 Score=73.85 Aligned_cols=149 Identities=9% Similarity=0.038 Sum_probs=82.0
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH--H----HhhhCCC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS--I----HNTISPE 97 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--i----~~~~~~~ 97 (206)
.++|++.. ++.+...+...... .+......+.++|++|+|||++|+.+++...... + ...+...
T Consensus 492 ~viGq~~a--------~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 492 RVIGQDEA--------VVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp TSCSCHHH--------HHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred cCcChHHH--------HHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 46677776 66666666432210 0122334799999999999999999876641110 0 0111111
Q ss_pred CCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccC-----------CCCcEEEEeCCC-----hH
Q 039853 98 TASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAV-----------ASRRKVIVTTRN-----QG 161 (206)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IiiTTR~-----~~ 161 (206)
. ......+...++. .....|+||+++..+.+.+..+...+..+ .....||.||.. ..
T Consensus 564 ~----~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 564 H----STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp C----CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred c----ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 1 1111222222222 23458999999877777777777666542 234578888863 11
Q ss_pred ----HHHhc-----CC-CCceeCCCCCHHHHHHHHhhc
Q 039853 162 ----VTSIM-----GT-MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 162 ----v~~~~-----~~-~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+...+ +. ..++.+.+|+.++..+++...
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11111 11 247899999999888877653
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.95 E-value=1.6e-06 Score=63.03 Aligned_cols=86 Identities=15% Similarity=0.026 Sum_probs=45.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQR 141 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~ 141 (206)
..+.|+|++|+|||||++.++........ ..+.-.. .+.... . +..+.-+||+|++.......-..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~-~~~~~~~--~~~~~~--------~-~~~~~~lLilDE~~~~~~~~~~~l~ 104 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGK-NAAYIDA--ASMPLT--------D-AAFEAEYLAVDQVEKLGNEEQALLF 104 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTC-CEEEEET--TTSCCC--------G-GGGGCSEEEEESTTCCCSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCC-cEEEEcH--HHhhHH--------H-HHhCCCEEEEeCccccChHHHHHHH
Confidence 58999999999999999998775432100 0000000 000000 1 1234568999999854333333333
Q ss_pred hhcccC-CCCc-EEEEeCCC
Q 039853 142 VLFVAV-ASRR-KVIVTTRN 159 (206)
Q Consensus 142 ~~l~~~-~~gs-~IiiTTR~ 159 (206)
..+... ..|. .+|+||+.
T Consensus 105 ~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 105 SIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHcCCcEEEEECCC
Confidence 333211 2233 48888874
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.95 E-value=6.3e-06 Score=74.66 Aligned_cols=156 Identities=10% Similarity=0.050 Sum_probs=81.7
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCCC---
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISPE--- 97 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~~--- 97 (206)
.++|++.. ++.+...+...... ..+.....+.++|++|+|||++|+.+++......+ ...+...
T Consensus 459 ~v~g~~~~--------~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKA--------IEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHH--------HHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHH--------HHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 45676666 66665555321110 01223457999999999999999998765421110 0001000
Q ss_pred -CC-CCCCCCHHH-HHHHHHhhhC-CceEEEEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEEEeCCChH-
Q 039853 98 -TA-SASDDNLNS-LQVKLKSGLS-RKKFQLASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVIVTTRNQG- 161 (206)
Q Consensus 98 -~~-~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiTTR~~~- 161 (206)
.. +........ ....+...++ .....|+||+++..+.+.+..+...+..+. ....||.||....
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~ 610 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchh
Confidence 00 000001110 0011222222 335789999998766776777766655321 2345677765310
Q ss_pred ---------------------HH-----HhcCC-CCceeCCCCCHHHHHHHHhhc
Q 039853 162 ---------------------VT-----SIMGT-MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 162 ---------------------v~-----~~~~~-~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+. ..... ...+.+.+|+.++...++...
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~ 665 (758)
T 1r6b_X 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_dssp -----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHH
Confidence 11 11111 246899999999888877654
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1e-05 Score=68.53 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=40.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
.++-+.++|+||.|||.||+++++.....++.-....-....-......+...+...-...++++++|+++
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 56789999999999999999998776443210000000000011112223333333334568999999986
No 74
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.84 E-value=5.5e-05 Score=61.90 Aligned_cols=149 Identities=13% Similarity=0.019 Sum_probs=76.3
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCC
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASD 103 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~ 103 (206)
-..++|++.. ++.+...+..... .......+.++|++|+||||||+.++...... +.... ....
T Consensus 24 l~~~~g~~~~--------~~~l~~~i~~~~~--~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-----~~~~s-g~~~ 87 (334)
T 1in4_A 24 LDEFIGQENV--------KKKLSLALEAAKM--RGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-----IHVTS-GPVL 87 (334)
T ss_dssp GGGCCSCHHH--------HHHHHHHHHHHHH--HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-----EEEEE-TTTC
T ss_pred HHHccCcHHH--------HHHHHHHHHHHHh--cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEe-chHh
Confidence 3457787766 6665555532100 01133579999999999999999977653110 00000 0111
Q ss_pred CCHHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCC--------C----------CcEE-EEeCCChHHHH
Q 039853 104 DNLNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVA--------S----------RRKV-IVTTRNQGVTS 164 (206)
Q Consensus 104 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~----------gs~I-iiTTR~~~v~~ 164 (206)
.....+...+ ..+. ++.++++|+++.......+.+...+.... . ...+ -.|++...+..
T Consensus 88 ~~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~ 165 (334)
T 1in4_A 88 VKQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS 165 (334)
T ss_dssp CSHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCH
T ss_pred cCHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCH
Confidence 2222332222 2232 34577789887544433444433222111 0 1112 23555433322
Q ss_pred hcC--CCCceeCCCCCHHHHHHHHhhcc
Q 039853 165 IMG--TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 165 ~~~--~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
... ..-.+.+++.+.++-.+++.+.+
T Consensus 166 ~l~sR~~l~~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 166 PLRSRFGIILELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 111 11257899999999999998764
No 75
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=6.6e-06 Score=69.83 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=67.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHHH---HhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCC---
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNSI---HNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKD--- 132 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--- 132 (206)
..++-|.++|+||.|||.||+++++.....++ ...+.... .......+...+...-...+++|++|+++..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~---vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~ 289 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY---IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 289 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC---SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCC
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc---cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhc
Confidence 35688999999999999999999877644320 01111111 1111111222222222346899999998731
Q ss_pred --Ccc-----c----HHHHHhhcccC--CCCcEEEEeCCChHHH-Hh-cCC---CCceeCCCCCHHHHHHHHhhc
Q 039853 133 --KYV-----D----WTNQRVLFVAV--ASRRKVIVTTRNQGVT-SI-MGT---MPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 133 --~~~-----~----~~~l~~~l~~~--~~gs~IiiTTR~~~v~-~~-~~~---~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+.. . ...++..+... ..+-.||.||...... .. .++ ...+.++.-+.+.-.++|+.+
T Consensus 290 R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (434)
T 4b4t_M 290 RFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIH 364 (434)
T ss_dssp CSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred cCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHH
Confidence 000 1 12233333322 2233455577554332 11 122 135788877888878887654
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.82 E-value=3.6e-05 Score=70.70 Aligned_cols=123 Identities=10% Similarity=0.037 Sum_probs=65.2
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCC--CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH---HH-----------
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDS--ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV---NS----------- 89 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~----------- 89 (206)
.++|++.. ++.+...+..... ..++.....+.|+|++|+|||++|+.+++.... ..
T Consensus 559 ~viG~~~a--------~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 559 RVVGQDEA--------IRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HSCSCHHH--------HHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred ccCCcHHH--------HHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 46777777 6666665543211 001223458999999999999999998765421 11
Q ss_pred -HHhhhCCCCCCCCCCC-HHHHHHHHHhhhCCceEEEEEcCCCCCCcccHHHHHhhcccCC-----------CCcEEEEe
Q 039853 90 -IHNTISPETASASDDN-LNSLQVKLKSGLSRKKFQLASGDMWKDKYVDWTNQRVLFVAVA-----------SRRKVIVT 156 (206)
Q Consensus 90 -i~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IiiT 156 (206)
....+.......-..+ ...+...+.. ....+|+||+++..+.+.+..|...+..+. ++..||+|
T Consensus 631 ~~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp GGGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred hHHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0011100000000000 0112222222 224689999998777777777777665331 34457777
Q ss_pred CCC
Q 039853 157 TRN 159 (206)
Q Consensus 157 TR~ 159 (206)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 77
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.80 E-value=1.2e-05 Score=65.27 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
++.+.+++..... .....+.|+|++|+|||+||.++++...
T Consensus 137 ~~~~~~~i~~~~~----~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 137 FSAILDFVEQYPS----AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHCSC----SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455566654321 1236789999999999999999887554
No 78
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.77 E-value=6.3e-05 Score=62.38 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999987654
No 79
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.71 E-value=8.4e-05 Score=64.90 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=62.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHh--hhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHN--TISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
....+.++|++|+||||||+.++......+ +.. .+..................+... ....-+++||+++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a-~~~~~vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA-GKLNPVFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT-CSSSEEEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh-hccCCEEEEhhhh
Confidence 346899999999999999999876542221 000 000000000000001111122222 2233488899998
Q ss_pred CCCcc----cHHHHHhhcccCC---------------CCcEEEEeCCChH-HH-HhcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 131 KDKYV----DWTNQRVLFVAVA---------------SRRKVIVTTRNQG-VT-SIMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 131 ~~~~~----~~~~l~~~l~~~~---------------~gs~IiiTTR~~~-v~-~~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
..... ....+...+.... ....+|.||.... +. .......++.+.+++.++-.+++.++
T Consensus 186 ~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 186 KMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp SCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHT
T ss_pred hhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHH
Confidence 54332 1233333332111 2345566665422 11 11111146899999999988888765
No 80
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=3.9e-05 Score=64.78 Aligned_cols=129 Identities=12% Similarity=0.004 Sum_probs=68.6
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHHHH---hhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC--
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIH---NTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK-- 133 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-- 133 (206)
..++-|.++|++|.|||.||+++++.....++. ..+.... -......+...+...-...+++|.+|+++..-
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~---vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~ 290 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY---LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS---SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCC
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc---CchHHHHHHHHHHHHHhcCCcEEEEehhhhhccc
Confidence 356889999999999999999998776543310 0111111 11111222222222224568999999987420
Q ss_pred --------cc----cHHHHHhhccc--CCCCcEEEEeCCChHHH-Hh-cCCC---CceeCCCCCHHHHHHHHhhcc
Q 039853 134 --------YV----DWTNQRVLFVA--VASRRKVIVTTRNQGVT-SI-MGTM---PAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 --------~~----~~~~l~~~l~~--~~~gs~IiiTTR~~~v~-~~-~~~~---~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.. .+..++..+.. ...+-.||.||...... .. .++. ..+.++.-+.+.-.++|+.+.
T Consensus 291 R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 291 RYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp CSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 00 12223333332 22344455566543332 22 2222 346777777777788887654
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.63 E-value=0.0001 Score=67.23 Aligned_cols=155 Identities=10% Similarity=-0.012 Sum_probs=77.6
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhC----CCC--CCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILK----DDS--ECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTIS 95 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~----~~~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~ 95 (206)
.+++|.+.. +++|.+++.. ... .-.-.....+.|+|++|+||||||+.++......+ -...+.
T Consensus 204 ~di~G~~~~--------~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 204 DDVGGCRKQ--------LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp GGCCSCSGG--------GGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHS
T ss_pred HHhCChHHH--------HHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhh
Confidence 346777777 6665555532 110 00112346799999999999999999987653221 000111
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCCc------c-----cHHHHHhhcccC--CCCcEEEEeCCChH-
Q 039853 96 PETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDKY------V-----DWTNQRVLFVAV--ASRRKVIVTTRNQG- 161 (206)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs~IiiTTR~~~- 161 (206)
... .......+...+.........++++|+++..-. . ....+...+... ..+..+|.||....
T Consensus 276 ~~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 276 SKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 111 111112222233333334578999999863211 1 112232222211 22334555555432
Q ss_pred HHHhcC----CCCceeCCCCCHHHHHHHHhhcc
Q 039853 162 VTSIMG----TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 162 v~~~~~----~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+..... -...+.+...+.++-.+++..++
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 211111 11346777788888888887654
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.59 E-value=8.6e-05 Score=59.17 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=64.9
Q ss_pred EEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhh----CCceEEEEEcCCCCCC------
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGL----SRKKFQLASGDMWKDK------ 133 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~------ 133 (206)
+.|+|++|.||||||+.++.......+ .+.... ............+...+ ...++++++|+++..-
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i--~i~g~~--l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~ 122 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFI--SVKGPE--LLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR 122 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEE--EEETTT--TCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEE--EEEcHH--HHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC
Confidence 999999999999999998765432110 000111 11111122222222222 2357899999997421
Q ss_pred -----cccHHHHHhhcccC--CCCcEEEEeCCChHHHH--hc---CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 -----YVDWTNQRVLFVAV--ASRRKVIVTTRNQGVTS--IM---GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 -----~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~--~~---~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
......+...+..+ .....++.+|....+.. .. +-...+.++..+.++-.++|+.+.
T Consensus 123 ~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 123 ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp ----CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 01122333334322 22333444666554321 11 222467888888888888887654
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.55 E-value=0.00019 Score=56.91 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=61.6
Q ss_pred EEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC---
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK--- 133 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--- 133 (206)
+.|+|++|+||||||+.++....... +..... ......+...+...-.....++++|+++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV-------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT-------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh-------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccc
Confidence 89999999999999999876543111 111110 0001111222222223456899999985210
Q ss_pred -------cccH----HHHHhhcccCCCC--cEEEEeCCChHHHH--hc---CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 -------YVDW----TNQRVLFVAVASR--RKVIVTTRNQGVTS--IM---GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 -------~~~~----~~l~~~l~~~~~g--s~IiiTTR~~~v~~--~~---~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
...+ ..+...+..+... ..++.+|....... .. .-...+.++..+.++-.+++..++
T Consensus 149 ~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp -------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred ccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1111 2233333322222 23333555433211 11 223468888888888888887654
No 84
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.52 E-value=0.00012 Score=56.56 Aligned_cols=96 Identities=8% Similarity=-0.022 Sum_probs=55.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH----HHh---------hhCCC----CCCCCCCCHHHHHHHHHhhhCCce-E
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS----IHN---------TISPE----TASASDDNLNSLQVKLKSGLSRKK-F 122 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----i~~---------~~~~~----~~~~~~~~~~~~~~~l~~~l~~kr-~ 122 (206)
-.++.++|..|+||||++..+..+..... +++ ++... ...........+.+.+.+.+.+.+ -
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 36899999999999999977766654332 110 11000 000001123345555665554444 4
Q ss_pred EEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 123 QLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 123 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
++++|.+...+.+.++.+.. +.+ .|-.||+|-+.
T Consensus 92 vViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 92 VIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLD 125 (223)
T ss_dssp EEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCS
T ss_pred EEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecc
Confidence 99999998655555444433 332 26789999883
No 85
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.52 E-value=0.00013 Score=57.00 Aligned_cols=120 Identities=11% Similarity=0.043 Sum_probs=62.0
Q ss_pred EEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC---
Q 039853 64 TPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK--- 133 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--- 133 (206)
+.|+|++|+||||||+.++....... +..... ......+...+...-.....++++|+++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~ 124 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV-------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCT-------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHh-------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhccc
Confidence 89999999999999999876543111 111100 0001112222222222356899999985210
Q ss_pred -------ccc----HHHHHhhcccCCC--CcEEEEeCCChHHHH-h-cC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 -------YVD----WTNQRVLFVAVAS--RRKVIVTTRNQGVTS-I-MG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 -------~~~----~~~l~~~l~~~~~--gs~IiiTTR~~~v~~-~-~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
... ...+...+..+.. ...++.+|....... . .. -...+.++..+.++-.+++..++
T Consensus 125 ~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp -------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 011 1233333332222 223344555544321 1 11 22367888888888888887654
No 86
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.51 E-value=1.9e-05 Score=67.42 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=50.8
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhH--HH---HHhhhCCCCC
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTV--NS---IHNTISPETA 99 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~---i~~~~~~~~~ 99 (206)
..++|++.. .+.+..+++++..... ..+-+.++|++|+|||+||+++++.... .+ -...+...
T Consensus 37 ~~iiG~~~~-----~~~l~~~~~~~~~~~~-----~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~-- 104 (456)
T 2c9o_A 37 SGLVGQENA-----REACGVIVELIKSKKM-----AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST-- 104 (456)
T ss_dssp TTEESCHHH-----HHHHHHHHHHHHTTCC-----TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS--
T ss_pred hhccCHHHH-----HHHHHHHHHHHHhCCC-----CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH--
Confidence 457777766 1112344444444332 3356899999999999999998876531 11 00011111
Q ss_pred CCCCCCHHHHHHHHHhh---hCCceEEEEEcCCC
Q 039853 100 SASDDNLNSLQVKLKSG---LSRKKFQLASGDMW 130 (206)
Q Consensus 100 ~~~~~~~~~~~~~l~~~---l~~kr~LlVlDdv~ 130 (206)
.....+.+.+.+... -...+++|++|+++
T Consensus 105 --~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 105 --EIKKTEVLMENFRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp --SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEE
T ss_pred --hhhhhHHHHHHHHHHHhhhhcCCcEEEEechh
Confidence 111222333444443 23457899999986
No 87
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.49 E-value=0.00012 Score=55.91 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=45.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHHH-----HHhh--------------hCCCCCCCCCCCHHHHHHHHHhhhCCceEE
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVNS-----IHNT--------------ISPETASASDDNLNSLQVKLKSGLSRKKFQ 123 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~~-----i~~~--------------~~~~~~~~~~~~~~~~~~~l~~~l~~kr~L 123 (206)
+|.|.|+||+||+|.|+.++.++...+ +++. .... ......+.....+.+.+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~---G~lvpd~iv~~lv~~~l~~~~~- 77 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMER---GELVPDDLIIALIEEVFPKHGN- 77 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHH---TCCCCHHHHHHHHHHHCCSSSC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhc---CCcCCHHHHHHHHHHhhccCCc-
Confidence 578999999999999999887663222 2221 1111 1233445556667777765544
Q ss_pred EEEcCCCCCCcccHHHHHhh
Q 039853 124 LASGDMWKDKYVDWTNQRVL 143 (206)
Q Consensus 124 lVlDdv~~~~~~~~~~l~~~ 143 (206)
+|||++-. +..+...+...
T Consensus 78 ~ilDGfPR-t~~Qa~~l~~~ 96 (206)
T 3sr0_A 78 VIFDGFPR-TVKQAEALDEM 96 (206)
T ss_dssp EEEESCCC-SHHHHHHHHHH
T ss_pred eEecCCch-hHHHHHHHHhh
Confidence 67899863 34444444333
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.47 E-value=0.0002 Score=61.85 Aligned_cols=125 Identities=12% Similarity=0.050 Sum_probs=66.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCC----ceEEEEEcCCCCCCc---
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSR----KKFQLASGDMWKDKY--- 134 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~~~~--- 134 (206)
+-+.|+|++|.|||+||++++......++. +.... ............+...+.. ..+++++|+++....
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~--i~g~~--~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~ 140 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFIT--ASGSD--FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 140 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEE--EEGGG--GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE--EehhH--HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhc
Confidence 349999999999999999988654321100 00000 0011112223334444433 358999999964311
Q ss_pred -------cc----HHHHHhhcccCC--CCcEEEEeCCChHHHH--hcC---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 135 -------VD----WTNQRVLFVAVA--SRRKVIVTTRNQGVTS--IMG---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 135 -------~~----~~~l~~~l~~~~--~gs~IiiTTR~~~v~~--~~~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
+. +..+...+.... .+..++.+|....... ..+ -...+.++..+.++-.++|..++
T Consensus 141 ~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 141 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp SSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 11 223333343222 2334455666554421 111 12467888888888888887664
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.46 E-value=7e-05 Score=56.72 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=32.0
Q ss_pred HHHhhhCCc-eEEEEEcCCCC---CCcccHHHHHhhcccCCCCcEEEEeCCChH
Q 039853 112 KLKSGLSRK-KFQLASGDMWK---DKYVDWTNQRVLFVAVASRRKVIVTTRNQG 161 (206)
Q Consensus 112 ~l~~~l~~k-r~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~ 161 (206)
..++.+.+. --|||||++.. ...-..+.+...+........||+|+|+..
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 345555554 44999998731 133445556666665556678999999854
No 90
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.44 E-value=0.00016 Score=56.82 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=33.1
Q ss_pred hHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 38 MKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 38 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+...+.+...++.... ......+|.|.|++|+||||+|+.+....
T Consensus 11 ~~~~~~~~~~~~~~~~~--~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKK--SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHHHTTCC--CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCC--cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34445666666665543 34556899999999999999999886543
No 91
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.43 E-value=0.00021 Score=57.25 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=30.5
Q ss_pred hHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 41 REEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 41 ~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~--~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK--AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC--CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc--CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35555555555443 3445689999999999999999988643
No 92
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.42 E-value=0.00016 Score=55.67 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+.++|.|.|+||+||+|.|+.++.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4678999999999999999998887653
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.37 E-value=0.00014 Score=59.22 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=41.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHHHHhhh-CCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTI-SPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
+++.|+|++|+|||+||..++.......+.-.+ ..+.......+.+...+.+.+.+...+ ++|+|++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccc
Confidence 567899999999999998887641000011111 000000112456666666666666555 999999874
No 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.36 E-value=0.00018 Score=54.39 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=30.8
Q ss_pred hHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 41 REEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 41 ~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.++.|.+.+..... ....+++|.|.+|+|||||++.+...
T Consensus 6 ~~~~l~~~~~~~~~----~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 6 RIDFLCKTILAIKT----AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHTSCC----SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36777777765432 35579999999999999999987654
No 95
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.36 E-value=0.00018 Score=54.66 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.++|.+.+.... +...+++|.|++|+|||||++.+.....
T Consensus 8 ~~~~~~~~~~~~-----~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQ-----PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTC-----CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 555666554331 2457999999999999999988876544
No 96
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.31 E-value=0.0014 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.243 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+...+++|+|+.|+||||++..++...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998876543
No 97
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.30 E-value=0.00043 Score=57.25 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=61.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---HH------hhhCCCC-----CCCCCCCHHHHHHHHHhhhCCceEEEEEc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---IH------NTISPET-----ASASDDNLNSLQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~------~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 127 (206)
.+++|+|+.|+|||||.+.+........ ++ ....... ......+.....+.+...|...+-+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 4999999999999999998876654431 00 0000000 00001111234557888899999999999
Q ss_pred CCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHHH
Q 039853 128 DMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVTS 164 (206)
Q Consensus 128 dv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~ 164 (206)
.+. +.+.+..+..... .|..||+||.......
T Consensus 204 Ep~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 204 EMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred CCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 998 6666665554432 3556888888766543
No 98
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.21 E-value=6.8e-05 Score=56.20 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=48.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH----HH----h-hhCCCC-CCCC-----CCCHHHHHHHHHhhhCCceEEEEE
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS----IH----N-TISPET-ASAS-----DDNLNSLQVKLKSGLSRKKFQLAS 126 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----i~----~-~~~~~~-~~~~-----~~~~~~~~~~l~~~l~~kr~LlVl 126 (206)
.++.|+|+.|+||||++..++.+..... ++ . ..+... .... ...... ...+.+.+.++.-++++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~-~~~~~~~~~~~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIER-PEEMRKYIEEDTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESS-GGGGGGGCCTTEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECC-HHHHHHHhcCCCCEEEE
Confidence 4789999999999999866554432211 00 0 000000 0000 000000 11233334445669999
Q ss_pred cCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 127 GDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 127 Ddv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
|.+...+.+.++.+..... . |..|++|.+.
T Consensus 83 DE~Q~~~~~~~~~l~~l~~-~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLD-R--GIDVFCAGLD 112 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHH-T--TCEEEEEEES
T ss_pred ECcccCCHHHHHHHHHHHH-C--CCCEEEEeec
Confidence 9998655554444433333 2 6678887664
No 99
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00018 Score=52.31 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=18.7
Q ss_pred eEEEEEcCCCchHHHHHHHH
Q 039853 62 SVTPVIGMGGSGNTTLALPV 81 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v 81 (206)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999988
No 100
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.19 E-value=0.00057 Score=54.92 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
....+|+|.|.+|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999987765543
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00018 Score=52.94 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998764
No 102
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.18 E-value=0.00021 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999886
No 103
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.18 E-value=0.00056 Score=62.23 Aligned_cols=125 Identities=12% Similarity=0.009 Sum_probs=65.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHH-------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNS-------IHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
...+-+.++|++|.|||.||+++++.....+ ++...... ....+.+.+...-+..++.|++|+++.
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGe-------se~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE-------SEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSS-------CHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccch-------HHHHHHHHHHHHHHcCCceeechhhhH
Confidence 3456789999999999999999998875443 33332222 223344444444456789999999874
Q ss_pred CC------c----c----cHHHHHhhcccCCCC-cEEEE-eCCC-hHHH-Hhc---CCCCceeCCCCCHHHHHHHHhhcc
Q 039853 132 DK------Y----V----DWTNQRVLFVAVASR-RKVIV-TTRN-QGVT-SIM---GTMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 132 ~~------~----~----~~~~l~~~l~~~~~g-s~Iii-TTR~-~~v~-~~~---~~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
.- . . ...+|+..+...... ..++| ||.. ..+- ... +-...+.++.-+.++-.++|+.+.
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred HhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 20 0 0 123344444322222 22333 4533 2221 111 223567777666666667776553
No 104
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00022 Score=51.96 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999987655
No 105
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.0003 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++|+|++|+|||||++.+....
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3689999999999999999997753
No 106
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.09 E-value=0.0014 Score=54.39 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=32.3
Q ss_pred HHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC--CCCcEEEEeCCChHHHHh
Q 039853 113 LKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV--ASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~ 165 (206)
+.+.|-.++-+|++|..-. .+...-..+...+... ..|..||++|.+-..+..
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 5566667788999997652 2333333344333322 236779999998776654
No 107
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.07 E-value=0.00034 Score=57.72 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=34.3
Q ss_pred eeeecccchhhhHHhHHHHHHHHh-------CCCC-CCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 27 LFARQQQIQADMKKREEGTVELIL-------KDDS-ECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 27 ~~Gr~~~~~~~~~~~~~~l~~~l~-------~~~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++|.+.. ++.+...+. .... .........+.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~--------~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQA--------KKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHH--------HHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHH--------HHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6888887 777666662 0000 0011234678999999999999999987654
No 108
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.05 E-value=0.0024 Score=50.68 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=31.1
Q ss_pred hhhCCceEEEEEcCCCC-CCcccHHHHHhhcccCC--CCcEEEEeCCChHHHHh
Q 039853 115 SGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAVA--SRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 115 ~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~--~gs~IiiTTR~~~v~~~ 165 (206)
+.|-.++-+|+||..-. .+...-..+...+.... .|..||++|.+......
T Consensus 169 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~ 222 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence 33444567999998652 24444444555554432 37779999998776653
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.05 E-value=0.00037 Score=52.72 Aligned_cols=26 Identities=31% Similarity=0.224 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+++|.|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999876643
No 110
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.00035 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...|.|+|++|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998754
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.03 E-value=0.0027 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....+.++|++|.|||.+|.++++.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999987763
No 112
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.03 E-value=0.00043 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988654
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.0004 Score=51.47 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-++++|+|++|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999987653
No 114
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.02 E-value=0.00054 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+++|+|++|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3478999999999999999987653
No 115
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.0003 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..|.|.|++|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999998876543
No 116
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00047 Score=51.91 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+|+|+|++|+||||||+.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999887655
No 117
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.00 E-value=0.00035 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999987653
No 118
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.98 E-value=0.00042 Score=52.18 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+++|.|++|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988654
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.98 E-value=0.00033 Score=51.23 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+|+|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 120
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.97 E-value=0.00045 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++|+|++|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999987664
No 121
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00057 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+|+|.|++|+||||+|+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988654
No 122
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.96 E-value=0.00054 Score=51.48 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 58 DGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 58 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.....+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999998887543
No 123
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.95 E-value=0.00068 Score=54.89 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||++.+..-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 589999999999999999886544
No 124
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.95 E-value=0.00035 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 125
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.92 E-value=0.00056 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5679999999999999999988764
No 126
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.91 E-value=0.00045 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999887644
No 127
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00051 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988654
No 128
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.91 E-value=0.00058 Score=51.32 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.....|.|.|++|+||||+|+.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988654
No 129
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.91 E-value=0.0028 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|+|||||.+.++.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999988643
No 130
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.89 E-value=0.00044 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999887543
No 131
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.89 E-value=0.00062 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....|.|+|++|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988765
No 132
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.89 E-value=0.00043 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999987543
No 133
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.89 E-value=0.0022 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|+|||||.+.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988643
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.88 E-value=0.00038 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999887543
No 135
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.86 E-value=0.0043 Score=50.55 Aligned_cols=126 Identities=6% Similarity=-0.111 Sum_probs=79.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHHHHh-hhCCCCCCCCCCCHHHHHHHHHh-hhCCceEEEEEcCCCC-CCcccH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNSIHN-TISPETASASDDNLNSLQVKLKS-GLSRKKFQLASGDMWK-DKYVDW 137 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~-~~~~~~ 137 (206)
.+++.++|..|.||++.+..+........+-. ... .. ....+...+.+.+.. -+.+++-++|+|+++. .+...+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~ 94 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SI--DPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAIN 94 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-EC--CTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-Ee--cCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHH
Confidence 47999999999999999988766442110000 000 01 123456666655432 3456677889999986 567788
Q ss_pred HHHHhhcccCCCCcEEEEeCCC-------hHHHHhc-CCCCceeCCCCCHHHHHHHHhhc
Q 039853 138 TNQRVLFVAVASRRKVIVTTRN-------QGVTSIM-GTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 138 ~~l~~~l~~~~~gs~IiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
+.+...+....+++.+|+++.. ..+...+ ....+++..+++.++....+.+.
T Consensus 95 ~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 95 EQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp HHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 8888888766667777665432 2333333 33357888899888777666554
No 136
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.86 E-value=0.0014 Score=54.60 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.++.-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 589999999999999999986544
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.85 E-value=0.00067 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999887643
No 138
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.85 E-value=0.00082 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|+|.|.+|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988764
No 139
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.84 E-value=0.0014 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999877654
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.84 E-value=0.00071 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999886654
No 141
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.83 E-value=0.00069 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=19.6
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~ 82 (206)
.+.++|+|.|-|||||||.|..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHH
Confidence 356899999999999999776553
No 142
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.83 E-value=0.0024 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|+.|+|||||.+.++.-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 589999999999999999886443
No 143
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.83 E-value=0.00065 Score=49.96 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCchHHHHHHHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPV 81 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v 81 (206)
-.+++|+|++|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999953
No 144
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.00047 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999876543
No 145
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.82 E-value=0.00066 Score=53.07 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....+|+|.|++|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999886643
No 146
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.82 E-value=0.00039 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999987654
No 147
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.82 E-value=0.00074 Score=50.16 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|.|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999998874
No 148
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.82 E-value=0.00073 Score=53.16 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 149
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.00058 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..|+|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999887643
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.80 E-value=0.00057 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
++++|.|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999987643
No 151
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.78 E-value=0.00064 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|+|.|++|+||||+|+.+....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999998887643
No 152
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.0024 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999988644
No 153
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.00067 Score=50.70 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999887643
No 154
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00049 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999887643
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.76 E-value=0.0035 Score=50.36 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
...+++++|.+|+||||++..++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999987765443
No 156
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.75 E-value=0.00045 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=16.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988643
No 157
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.75 E-value=0.0011 Score=49.06 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
...+|.|.|++|+||||+++.++....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999998876543
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.75 E-value=0.00099 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...|+|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 159
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.75 E-value=0.0027 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|+|||||.+.++.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 58999999999999999988643
No 160
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.74 E-value=0.013 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...++.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988776433
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.74 E-value=0.00076 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|.|.|++|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999887653
No 162
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.73 E-value=0.00085 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~ 82 (206)
..+++|+|++|+|||||++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999988
No 163
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.73 E-value=0.00067 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999887643
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.00085 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|+|+|++|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999887644
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.72 E-value=0.0013 Score=54.56 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=56.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHH-H--H--Hhh-----hCCCCC-CCC---CCCHHHHHHHHHhhhCCceEEEEE
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVN-S--I--HNT-----ISPETA-SAS---DDNLNSLQVKLKSGLSRKKFQLAS 126 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--i--~~~-----~~~~~~-~~~---~~~~~~~~~~l~~~l~~kr~LlVl 126 (206)
-.+++|+|+.|+|||||++.+....... . + ... +..... ..+ ..+...+...+...|...+-++++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ill 215 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 215 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEE
Confidence 3689999999999999999887655443 1 1 000 000000 000 001123345677777777889999
Q ss_pred cCCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHH
Q 039853 127 GDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGV 162 (206)
Q Consensus 127 Ddv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v 162 (206)
|.+. +.+.+....... ..|..|+.|+....+
T Consensus 216 dE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 216 GEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp SCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred CCCC--CHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 9987 555444433322 346668888876543
No 166
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.72 E-value=0.0013 Score=53.63 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhc
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
+..+...++... ....+.+++|.|..|+||||||+.+..
T Consensus 76 l~~~~~~~l~~~---~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 76 LQQATYQFLGKP---EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHTCC---CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccC---CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444555555443 234678999999999999999987754
No 167
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.72 E-value=0.001 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=20.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 168
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.71 E-value=8.5e-05 Score=67.81 Aligned_cols=131 Identities=11% Similarity=-0.066 Sum_probs=62.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCCCCC------
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMWKDK------ 133 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------ 133 (206)
....+.++|++|+|||+||+.++......++.-....-....-......+...+...-....+++++|+++...
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~ 589 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCC
Confidence 34568999999999999999988665322100000000000001111222222222222245789999986310
Q ss_pred --------cccHHHHHhhcccC--CCCcEEEEeCCCh-HHHHhc-C---CCCceeCCCCCHHHHHHHHhhcc
Q 039853 134 --------YVDWTNQRVLFVAV--ASRRKVIVTTRNQ-GVTSIM-G---TMPAYELKKLVNDSCRLIFSQHP 190 (206)
Q Consensus 134 --------~~~~~~l~~~l~~~--~~gs~IiiTTR~~-~v~~~~-~---~~~~~~l~~L~~~~a~~Lf~~~a 190 (206)
......+...+... ..+..||.||... .+-... + -...+.++..+.++-.++|+.+.
T Consensus 590 ~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 590 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred CCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 00123333333322 2233344455432 222111 1 12356777778888888888764
No 169
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.70 E-value=0.00065 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999887653
No 170
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.70 E-value=0.00092 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998765
No 171
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.70 E-value=0.00092 Score=50.45 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988754
No 172
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.68 E-value=0.001 Score=50.19 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999887643
No 173
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.68 E-value=0.0013 Score=51.24 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|.|++|+||||+|+.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999887543
No 174
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.67 E-value=0.001 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999998886554
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.66 E-value=0.002 Score=53.24 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=43.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCC---CCCCCCCHHHHHHHHHhhhC-Cc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPET---ASASDDNLNSLQVKLKSGLS-RK 120 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-~k 120 (206)
.-+++.|.|++|+||||||..++....... .++.++... ......+.++....+...++ .+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 347999999999999999988775542211 333333221 00122344555555544443 45
Q ss_pred eEEEEEcCCCC
Q 039853 121 KFQLASGDMWK 131 (206)
Q Consensus 121 r~LlVlDdv~~ 131 (206)
.-++|+|.+..
T Consensus 140 ~dlvVIDSi~~ 150 (356)
T 3hr8_A 140 VDLIVVDSVAA 150 (356)
T ss_dssp CSEEEEECTTT
T ss_pred CCeEEehHhhh
Confidence 56899998763
No 176
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.66 E-value=0.0017 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..++++|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999877654
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.66 E-value=0.0013 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..++++|+|++|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999987654
No 178
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.64 E-value=0.00084 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
+.++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988764
No 179
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.64 E-value=0.00099 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887643
No 180
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.63 E-value=0.0011 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..|+|.|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999887764
No 181
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.63 E-value=0.0011 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 182
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.63 E-value=0.001 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887643
No 183
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.62 E-value=0.00047 Score=56.11 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=31.6
Q ss_pred CceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 25 LQLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 25 ~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|++.. ++.+...+..... .-+.|+|++|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~--------~~~l~~~~~~~~~-------~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDM--------KLALLLTAVDPGI-------GGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHH--------HHHHHHHHHCGGG-------CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHH--------HHHHHHHhhCCCC-------ceEEEECCCCccHHHHHHHHHHhC
Confidence 347787766 5554444433221 239999999999999999987643
No 184
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.61 E-value=0.00088 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999886543
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.61 E-value=0.00077 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999886654
No 186
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.61 E-value=0.00076 Score=51.54 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999887554
No 187
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.60 E-value=0.00093 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
|.|+|+|++|+|||||++.+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999987654
No 188
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.60 E-value=0.0014 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~ 82 (206)
....+|+|.|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999886
No 189
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.60 E-value=0.0015 Score=53.03 Aligned_cols=26 Identities=19% Similarity=-0.008 Sum_probs=22.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....+++|.|..|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35679999999999999999887653
No 190
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.59 E-value=0.00097 Score=49.25 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..+++.|.|..|+|||||+..+....+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 457999999999999999988776543
No 191
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.56 E-value=0.0028 Score=52.26 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS 89 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 89 (206)
....+.|+|++|+||||+++.++......+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 456799999999999999999887765544
No 192
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.55 E-value=0.00054 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999886544
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.54 E-value=0.0016 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|+|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999887643
No 194
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.54 E-value=0.0016 Score=50.62 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999887653
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.54 E-value=0.0014 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999988754
No 196
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.54 E-value=0.001 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999886543
No 197
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.52 E-value=0.0077 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.+.|.|.+|.|||+++..+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999998766543
No 198
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.52 E-value=0.0041 Score=50.59 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
....+++|+|.+|+||||++..++....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999987765543
No 199
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.51 E-value=0.0017 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...+++|+|++|+|||||+..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999987763
No 200
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.50 E-value=0.0014 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887654
No 201
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.48 E-value=0.0074 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|.|||||++.+..-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999886544
No 202
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.47 E-value=0.0017 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+|+|.|+.|+||||+++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999843
No 203
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.47 E-value=0.0018 Score=54.60 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=37.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceEEEEEcCCC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPETASASDDNLNSLQVKLKSGLSRKKFQLASGDMW 130 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 130 (206)
....+|.|+|++|+||||+|+.+..+..... + .. ........+...+...+...+. +|+|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~----i--~~--D~~~~~~~~~~~~~~~l~~g~~-vIiD~~~ 318 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH----V--NR--DTLGSWQRCVSSCQAALRQGKR-VVIDNTN 318 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEE----C--CG--GGSCSHHHHHHHHHHHHHTTCC-EEEESCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEE----E--cc--chHHHHHHHHHHHHHHHhcCCc-EEEeCCC
Confidence 4568999999999999999999876542110 0 00 1112234445555555544333 5688764
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.46 E-value=0.004 Score=51.24 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+.+.+.... +...+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~-----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS-----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC-----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc-----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 444455554332 25689999999999999999877543
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.45 E-value=0.0018 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
-.+++|+|++|+|||||++.++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999988754
No 206
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.45 E-value=0.0018 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..+|.|.|++|+||||+|+.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999998876544
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.44 E-value=0.0014 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999988764
No 208
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.40 E-value=0.0023 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.40 E-value=0.0018 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~ 82 (206)
-.+++|.|++|+|||||++.++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3689999999999999998776
No 210
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.015 Score=48.09 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....+++|+|+.|+||||++..++...
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 356799999999999999998876544
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.39 E-value=0.0023 Score=52.35 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.++|+|+|+.|+||||||..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999988764
No 212
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.39 E-value=0.0023 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999988765
No 213
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.39 E-value=0.0024 Score=52.12 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=54.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHHH---HHhhhCCCCC--CCCC---C--CHHHHHHHHHhhhCCceEEEEEcCCCC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVNS---IHNTISPETA--SASD---D--NLNSLQVKLKSGLSRKKFQLASGDMWK 131 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---i~~~~~~~~~--~~~~---~--~~~~~~~~l~~~l~~kr~LlVlDdv~~ 131 (206)
..++|+|..|+|||||++.+..-..... .+........ .... . .-......+...|..++-++++|.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~- 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR- 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC-
Confidence 4799999999999999999877654332 1110000000 0000 0 11223345667777888899999987
Q ss_pred CCcccHHHHHhhcccCCCCcEEEEeCCChHHH
Q 039853 132 DKYVDWTNQRVLFVAVASRRKVIVTTRNQGVT 163 (206)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~ 163 (206)
+.+.++.+. .+..+ +..+|+||......
T Consensus 251 -~~e~~~~l~-~~~~g--~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 251 -SSEAYDFYN-VLCSG--HKGTLTTLHAGSSE 278 (330)
T ss_dssp -STHHHHHHH-HHHTT--CCCEEEEEECSSHH
T ss_pred -hHHHHHHHH-HHhcC--CCEEEEEEcccHHH
Confidence 555554333 33322 22367776654443
No 214
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.39 E-value=0.0046 Score=54.28 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+++.|.|.+|.||||++..+....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999998876543
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.38 E-value=0.002 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3699999999999999999876543
No 216
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.37 E-value=0.0017 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|.|.|++|+||||+|+.+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999887654
No 217
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.36 E-value=0.0048 Score=51.12 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=42.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCCC---CCCCCCHHHHHHHHHhhhCC-ce
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPETA---SASDDNLNSLQVKLKSGLSR-KK 121 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~-kr 121 (206)
-+++.|.|.+|+|||+||..++....... ....++.... .....+.+++.+.+....+. ..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 36889999999999999987765432111 2333322110 01123455555656555543 45
Q ss_pred EEEEEcCCCC
Q 039853 122 FQLASGDMWK 131 (206)
Q Consensus 122 ~LlVlDdv~~ 131 (206)
-+||+|.+..
T Consensus 154 ~lVVIDsl~~ 163 (366)
T 1xp8_A 154 DVVVVDSVAA 163 (366)
T ss_dssp SEEEEECTTT
T ss_pred CEEEEeChHH
Confidence 6999998764
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.36 E-value=0.0033 Score=47.42 Aligned_cols=23 Identities=43% Similarity=0.290 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
-.++.|.|.+|+||||||..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988764
No 219
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.003 Score=46.55 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.....|+|+|.+|+|||||...+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999998887654
No 220
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.35 E-value=0.0025 Score=51.42 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...+++|.|..|+|||||++.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999877653
No 221
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.33 E-value=0.0024 Score=56.36 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=33.3
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++|.+.. ++.+...+... ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~--------l~~l~~~i~~g---------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHA--------VEVIKTAANQK---------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHH--------HHHHHHHHHTT---------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhh--------HhhccccccCC---------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46777777 77766666544 369999999999999999987654
No 222
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.31 E-value=0.0038 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|+.|+|||||++.+..-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999886544
No 223
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.31 E-value=0.003 Score=49.22 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhc
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568899999999999999988763
No 224
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0016 Score=48.17 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.+++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999887765543
No 225
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.31 E-value=0.0035 Score=47.80 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+.|+|++|.|||++|..+++..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999998876653
No 226
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.31 E-value=0.0021 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 227
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.30 E-value=0.0017 Score=49.22 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999886643
No 228
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.28 E-value=0.0068 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..++|+|.+|+|||||+..+.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 3689999999999999997766543
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.28 E-value=0.0078 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999877764
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.28 E-value=0.0015 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=15.7
Q ss_pred eEEEEEcCCCchHHHHHHHHh
Q 039853 62 SVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~ 82 (206)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999887
No 231
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.28 E-value=0.0018 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988654
No 232
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.27 E-value=0.0025 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+|+|.|..|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999887643
No 233
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.27 E-value=0.0032 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|.|||||.+.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999986543
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.24 E-value=0.0019 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999887543
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.24 E-value=0.0078 Score=50.99 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSE--CNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.|.++|...... .....+++|.++|.+|+||||++..++...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666432210 012457899999999999999987776444
No 236
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.24 E-value=0.0025 Score=49.42 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...++|.|++|+||||+|+.+....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999886654
No 237
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.23 E-value=0.0028 Score=51.45 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++|+|.|+.|+|||+||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999987665
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.21 E-value=0.0035 Score=50.70 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....+++|+|.+|+||||++..++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456899999999999999998776544
No 239
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.20 E-value=0.0031 Score=50.83 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....+++|+|+.|+||||+++.++...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876544
No 240
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.20 E-value=0.0076 Score=48.75 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-.++.|.|.+|+||||||..++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999777643
No 241
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.19 E-value=0.0026 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+|+|.|++|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999887654
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.18 E-value=0.0028 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|.|.+|+|||||+..++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999998887443
No 243
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.16 E-value=0.0043 Score=44.77 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999988764
No 244
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.15 E-value=0.0034 Score=47.19 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=52.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceE
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKF 122 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 122 (206)
-.+..++|..|.||||.+....++...+. +...++.........+.. .+.+.+.++--
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~~~~d 83 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFEEDTE 83 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSST----HHHHHCCTTCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHH----HHHHHHhccCC
Confidence 36999999999999998877766654332 111111000000001111 23334443334
Q ss_pred EEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCCh
Q 039853 123 QLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQ 160 (206)
Q Consensus 123 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~ 160 (206)
+|++|.+...+.+.++.+....+ .|..||+|.++.
T Consensus 84 vViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 84 VIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 89999987666666655544333 266899988753
No 245
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.0054 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 246
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.14 E-value=0.0033 Score=48.99 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999886543
No 247
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.14 E-value=0.0065 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.145 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...+++|+|++|.|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446999999999999999998875
No 248
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.014 Score=51.50 Aligned_cols=54 Identities=2% Similarity=-0.098 Sum_probs=32.0
Q ss_pred HHhhhCCceEEEEEcCCCC-CCcccHHHHHhhcccC--CCCcEEEEeCCChHHHHhc
Q 039853 113 LKSGLSRKKFQLASGDMWK-DKYVDWTNQRVLFVAV--ASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~ 166 (206)
+.+.|..++-+|+||.--. .+...-..+...+... ..|..||++|.+...+..+
T Consensus 478 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 5677778888999997542 1332223333333221 2356788899887766543
No 249
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.14 E-value=0.0037 Score=53.11 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=32.5
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCC-------CCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKD-------DSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.++|.++. ++.|...+... .........+-+.++|++|+|||++|+.++..
T Consensus 16 ~IvGqe~a--------k~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 16 HIIGQADA--------KRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TCCSCHHH--------HHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCHHHH--------HHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 47787777 66665555221 00000113456899999999999999987643
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.13 E-value=0.003 Score=48.99 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998854
No 251
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.13 E-value=0.003 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998874
No 252
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0079 Score=44.11 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...|+|+|.+|+|||||...+....
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999887543
No 253
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.0026 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcChh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999988876543
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.11 E-value=0.0036 Score=50.65 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++++|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999887554
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.10 E-value=0.0036 Score=50.15 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...++|+|+|-||+||||+|..++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 456899999999999999987765544
No 256
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.10 E-value=0.0033 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
-.++.|+|++|+|||||+..++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 36999999999999999987765
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.10 E-value=0.0031 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998854
No 258
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.10 E-value=0.0031 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++|.|+|++|+||||||..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999887654
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.09 E-value=0.0035 Score=46.40 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++++|.|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999998877653
No 260
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.09 E-value=0.0026 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..|+|+|++|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998763
No 261
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.06 E-value=0.004 Score=44.24 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+-|+++|.+|+|||||...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999998887654
No 262
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.05 E-value=0.0072 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.+++|+|+.|.|||||++.+..-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3689999999999999999886544
No 263
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.04 E-value=0.0033 Score=55.16 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|+.|.|||||++.+..-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 589999999999999998886544
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.04 E-value=0.0038 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.|.|.|++|+||||||..+..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999987765
No 265
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.04 E-value=0.011 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=20.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhc
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
..+++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987773
No 266
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.03 E-value=0.0015 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=18.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999887654
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.01 E-value=0.0038 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999886554
No 268
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.00 E-value=0.0046 Score=45.86 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....++|+|.+|+|||||.+.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35688999999999999999887543
No 269
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.99 E-value=0.0071 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999988765
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.97 E-value=0.0039 Score=49.18 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.4
Q ss_pred eEEEEEcCCCchHHHHHHHHh
Q 039853 62 SVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~ 82 (206)
.+++|+|+.|+|||||.+.++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999885
No 271
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.97 E-value=0.0039 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998854
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.95 E-value=0.0017 Score=54.32 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..++|+|.+|+|||||++.+.+.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHH
Confidence 58999999999999999877654
No 273
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.95 E-value=0.014 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....+++|+|..|+|||||++.++...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 356799999999999999998876544
No 274
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.95 E-value=0.0058 Score=45.03 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999888764
No 275
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.94 E-value=0.0061 Score=44.09 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999888654
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.93 E-value=0.0041 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.++.|+|.+|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999987663
No 277
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.93 E-value=0.0048 Score=47.62 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
....|+|.|++|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999998876643
No 278
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.92 E-value=0.0042 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998653
No 279
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.92 E-value=0.0043 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|.+|+|||||+..++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999876543
No 280
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.92 E-value=0.0049 Score=47.48 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999988764
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.92 E-value=0.0043 Score=48.76 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998854
No 282
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.91 E-value=0.004 Score=46.38 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...++|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988765
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.91 E-value=0.0044 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988644
No 284
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.90 E-value=0.0043 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-|+++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999888654
No 285
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.90 E-value=0.0046 Score=47.55 Aligned_cols=26 Identities=23% Similarity=0.029 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....+|+|.|..|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999987764
No 286
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.0021 Score=56.71 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=34.9
Q ss_pred CCceeeecccchhhhHHhHHHHHHHHhCCCCC----CCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 24 GLQLFARQQQIQADMKKREEGTVELILKDDSE----CNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 24 ~~~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.++|++.. ++.+.-.+...... .......-+.++|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~v--------k~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWEL--------KEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHH--------HHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHH--------HHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4567888877 66665555443210 000011158999999999999999988765
No 287
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.89 E-value=0.0071 Score=43.52 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.--|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4578999999999999999887664
No 288
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.88 E-value=0.0048 Score=47.66 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999887654
No 289
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.88 E-value=0.0048 Score=48.29 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988874
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.88 E-value=0.0032 Score=47.95 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988755
No 291
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.87 E-value=0.005 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999986544
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.87 E-value=0.0046 Score=48.84 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999998854
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.86 E-value=0.006 Score=43.53 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||||...+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999887654
No 294
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.86 E-value=0.013 Score=47.63 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=40.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcChhHH--H---------------HHhhhCCCC---CCCCCCCHHHH-HHHHHhh--h-C
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDKTVN--S---------------IHNTISPET---ASASDDNLNSL-QVKLKSG--L-S 118 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~~~~--~---------------i~~~~~~~~---~~~~~~~~~~~-~~~l~~~--l-~ 118 (206)
++-|.|++|+||||||..++...... . .++.++... ......+.++. .+.+... + .
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 68999999999999997765544332 1 444444322 00112244444 3322222 3 3
Q ss_pred CceEEEEEcCCCCC
Q 039853 119 RKKFQLASGDMWKD 132 (206)
Q Consensus 119 ~kr~LlVlDdv~~~ 132 (206)
.+.-|+|+|-+...
T Consensus 110 ~~~~lvVIDSI~aL 123 (333)
T 3io5_A 110 GEKVVVFIDSLGNL 123 (333)
T ss_dssp TCCEEEEEECSTTC
T ss_pred cCceEEEEeccccc
Confidence 46789999988743
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.86 E-value=0.0048 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988644
No 296
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.0049 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.++.|.|.+|+||||||..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999876653
No 297
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.85 E-value=0.0067 Score=44.50 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 45678999999999999999887664
No 298
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.85 E-value=0.0049 Score=47.59 Aligned_cols=53 Identities=6% Similarity=-0.076 Sum_probs=32.0
Q ss_pred HHhhhCCceEEEEEcCCCC-CCcccHHHHHhh-cccCCCCcEEEEeCCChHHHHh
Q 039853 113 LKSGLSRKKFQLASGDMWK-DKYVDWTNQRVL-FVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 113 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~-l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
+.+.|-.++-+++||..-. .+...-..+... +.....|..||++|.+......
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 3344445567999998652 244444445553 2333346679999998776654
No 299
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.85 E-value=0.024 Score=54.50 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|+.|+|||||++.+...+
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 589999999999999999887654
No 300
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.83 E-value=0.0055 Score=47.96 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++|+|.|.||+||||+|..++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578889999999999987665443
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.82 E-value=0.0051 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988764
No 302
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.82 E-value=0.0072 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35568999999999999999888755
No 303
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.82 E-value=0.0037 Score=49.00 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+...|+|.|..|+||||+|+.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999887764
No 304
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0067 Score=44.13 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~ 42 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGE 42 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34688999999999999999887543
No 305
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.81 E-value=0.005 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988654
No 306
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.81 E-value=0.0041 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988644
No 307
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.80 E-value=0.0051 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988654
No 308
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.79 E-value=0.006 Score=48.42 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.++|+|.|.||+||||+|..++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH
Confidence 3678889999999999987776544
No 309
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.79 E-value=0.0052 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-|+|+|.+|+|||||...+....
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58899999999999999887554
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.78 E-value=0.0066 Score=47.83 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhHH-H--H-H-----hhhCCCCC--CCC---CCCHHHHHHHHHhhhCCceEEEEEc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTVN-S--I-H-----NTISPETA--SAS---DDNLNSLQVKLKSGLSRKKFQLASG 127 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--i-~-----~~~~~~~~--~~~---~~~~~~~~~~l~~~l~~kr~LlVlD 127 (206)
.+++|+|+.|+|||||.+.+....... . + + ..+..... ... ..+...+...+...|..++-++++|
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 689999999999999999887655443 2 0 0 00000000 000 0011223455666666677789999
Q ss_pred CCCCCCcccHHHHHhhcccCCCCcEEEEeCCChHHH
Q 039853 128 DMWKDKYVDWTNQRVLFVAVASRRKVIVTTRNQGVT 163 (206)
Q Consensus 128 dv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~ 163 (206)
... +.+....+.... ..|..|++||.+....
T Consensus 106 Ep~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 106 EMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 886 544444433322 2466788888775543
No 311
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.76 E-value=0.0099 Score=55.02 Aligned_cols=106 Identities=9% Similarity=0.009 Sum_probs=54.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH-----------------HHhhhCCCCCCCCC-CCHHHHHHHHHhhh--CC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS-----------------IHNTISPETASASD-DNLNSLQVKLKSGL--SR 119 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------i~~~~~~~~~~~~~-~~~~~~~~~l~~~l--~~ 119 (206)
.-.+++|.|+.|.||||+.+.+.--.-... ++..++........ .....-..++...+ ..
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~ 740 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSAT 740 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhcc
Confidence 347899999999999999988731110000 11111111100000 01111122233344 56
Q ss_pred ceEEEEEcCCCC-CCcccHHH----HHhhcccCCCCcEEEEeCCChHHHHhc
Q 039853 120 KKFQLASGDMWK-DKYVDWTN----QRVLFVAVASRRKVIVTTRNQGVTSIM 166 (206)
Q Consensus 120 kr~LlVlDdv~~-~~~~~~~~----l~~~l~~~~~gs~IiiTTR~~~v~~~~ 166 (206)
++-|++||..-. .+...-.. +...+.. ..|+.+|++|.+..+...+
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA 791 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence 778999998753 12222222 2233321 2478899999997776543
No 312
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.75 E-value=0.017 Score=44.11 Aligned_cols=92 Identities=10% Similarity=-0.059 Sum_probs=51.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHHH------------------HHhhhCCCCCCCCCCCHHHHHHHHHhhhCCceE
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVNS------------------IHNTISPETASASDDNLNSLQVKLKSGLSRKKF 122 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~ 122 (206)
-.+..++|.-|.||||.+.....+..... +...++.........+. ..+.+.+.++--
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~----~~~~~~~~~~~d 103 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS----KDIFKHITEEMD 103 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSG----GGGGGGCCSSCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCH----HHHHHHHhcCCC
Confidence 46889999999999998877665554332 22222111100000011 122333333334
Q ss_pred EEEEcCCCCCCcccHHHHHhhcccCCCCcEEEEeCCC
Q 039853 123 QLASGDMWKDKYVDWTNQRVLFVAVASRRKVIVTTRN 159 (206)
Q Consensus 123 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IiiTTR~ 159 (206)
++++|.+...+.+.++.+....+ .|-.||+|-++
T Consensus 104 vViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 104 VIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp EEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred EEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 99999998766677755444333 36689999884
No 313
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.74 E-value=0.0092 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
+..+++|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 558999999999999999988754
No 314
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.74 E-value=0.0056 Score=48.35 Aligned_cols=23 Identities=35% Similarity=0.276 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999988543
No 315
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.74 E-value=0.0064 Score=45.80 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|.|+|.+|+|||||...+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999998877654
No 316
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.73 E-value=0.0057 Score=47.90 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999988654
No 317
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.73 E-value=0.006 Score=44.35 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....|+|+|.+|+|||||...+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4568899999999999999888743
No 318
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.73 E-value=0.0054 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.--|+++|.+|+|||||+..+....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3578899999999999998887543
No 319
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.72 E-value=0.0057 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.266 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999988643
No 320
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.72 E-value=0.0065 Score=44.26 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999887653
No 321
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.71 E-value=0.0064 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-.+++|+|+.|.|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 368999999999999999887643
No 322
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.71 E-value=0.021 Score=54.80 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
..|+|+|..|+|||||++.++.-+..
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCccC
Confidence 47899999999999999998765543
No 323
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0066 Score=43.44 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999888764
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.70 E-value=0.0059 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999887543
No 325
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.70 E-value=0.0075 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999887654
No 326
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.69 E-value=0.0071 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
...+++++|.+|+||||++..++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567999999999999999988765543
No 327
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.69 E-value=0.0078 Score=44.38 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 57 NDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 57 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.......|+|+|.+|+|||||...+....
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567789999999999999999887665
No 328
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.69 E-value=0.0059 Score=43.44 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..-|+++|.+|+|||||...+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999998886543
No 329
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.67 E-value=0.0082 Score=43.48 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+++|.+|+|||+|...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999887654
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.66 E-value=0.0079 Score=43.49 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999998876543
No 331
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.66 E-value=0.012 Score=47.22 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++++|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998776444
No 332
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.65 E-value=0.01 Score=42.83 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCc
Confidence 44578999999999999999887654
No 333
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.65 E-value=0.02 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999998887654
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.63 E-value=0.0063 Score=43.23 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999887644
No 335
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.62 E-value=0.01 Score=42.51 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=19.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
--|+|+|.+|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999988644
No 336
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.62 E-value=0.0071 Score=44.21 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCh
Q 039853 63 VTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-|+|+|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 57899999999999998887653
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.62 E-value=0.0065 Score=43.32 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
--|+|+|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999888654
No 338
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.61 E-value=0.0068 Score=52.54 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|.++|++|.||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999886543
No 339
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.61 E-value=0.021 Score=44.83 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+++|.+|+|||||...++...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999998887654
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.61 E-value=0.0066 Score=43.35 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
--|+++|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999998876543
No 341
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.58 E-value=0.0067 Score=43.36 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.--|+|+|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999998876554
No 342
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.58 E-value=0.0072 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.++|+|..|+|||||.+.++...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999887654
No 343
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.56 E-value=0.0058 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999887554
No 344
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.56 E-value=0.0077 Score=49.50 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.-.++.|+|++|+|||||+..++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999977653
No 345
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.55 E-value=0.0088 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..|+++|.+|+|||||...+....
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~ 49 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDR 49 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999887653
No 346
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.54 E-value=0.011 Score=43.44 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999888755
No 347
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.54 E-value=0.0044 Score=52.52 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
.+.+|+|+|.+|+||||++..++....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999988776543
No 348
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.0094 Score=43.04 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999887654
No 349
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.52 E-value=0.011 Score=53.68 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=53.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH-HH------------HHhhhC----CCCCCCCCCCHH-HHHHHHHhhh--CCce
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV-NS------------IHNTIS----PETASASDDNLN-SLQVKLKSGL--SRKK 121 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~------------i~~~~~----~~~~~~~~~~~~-~~~~~l~~~l--~~kr 121 (206)
.+++|.|+.|.|||||.+.+..-... +. ++.++. ....-....+.. .-...+...+ ..++
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p 656 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATEN 656 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCC
Confidence 68999999999999999877543210 00 111110 000000001111 1111234445 6678
Q ss_pred EEEEEcCCCCC-Cc-c--cH-HHHHhhcccCCCCcEEEEeCCChHHHHh
Q 039853 122 FQLASGDMWKD-KY-V--DW-TNQRVLFVAVASRRKVIVTTRNQGVTSI 165 (206)
Q Consensus 122 ~LlVlDdv~~~-~~-~--~~-~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 165 (206)
-|++||..-.- +. + .. ..+...+.. .|+.+|++|.+......
T Consensus 657 ~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 657 SLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTAL 703 (765)
T ss_dssp EEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTC
T ss_pred CEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHh
Confidence 99999987210 21 1 11 123344443 57789999999877654
No 350
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.51 E-value=0.0073 Score=43.59 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 44678999999999999998886543
No 351
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.51 E-value=0.011 Score=45.07 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55789999999999999999887653
No 352
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.50 E-value=0.0076 Score=43.00 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999887754
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.49 E-value=0.0086 Score=43.92 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+.+|+|..|.|||||+.+++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999988643
No 354
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.49 E-value=0.0067 Score=45.36 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....++|+|.+|+|||||.+.+....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999887654
No 355
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.49 E-value=0.0078 Score=47.51 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988644
No 356
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.49 E-value=0.0091 Score=42.72 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999887654
No 357
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.47 E-value=0.012 Score=42.71 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999888754
No 358
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.46 E-value=0.01 Score=47.72 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=24.2
Q ss_pred CCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 57 NDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 57 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+++....|+|+|.+|+|||||...+....
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45677899999999999999998887653
No 359
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.46 E-value=0.0092 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999887644
No 360
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.46 E-value=0.011 Score=42.67 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45679999999999999998886543
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.46 E-value=0.012 Score=43.69 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 45678999999999999998876543
No 362
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.45 E-value=0.0078 Score=44.17 Aligned_cols=26 Identities=27% Similarity=0.055 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||.+.+....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 34578999999999999997776543
No 363
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.44 E-value=0.0077 Score=42.89 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 039853 63 VTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~ 83 (206)
-|+++|.+|+|||+|...+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999988754
No 364
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.44 E-value=0.011 Score=42.30 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999888644
No 365
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.43 E-value=0.012 Score=45.42 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=19.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.|.+.|.||+||||+|..+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 458889999999999987776554
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.42 E-value=0.011 Score=42.22 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.--|+|+|.+|+|||||...+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999998876543
No 367
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.41 E-value=0.0094 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...-|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456889999999999999998853
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.41 E-value=0.0082 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..|+++|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999888754
No 369
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.40 E-value=0.011 Score=43.53 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||+|...+....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 44578999999999999998876543
No 370
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.40 E-value=0.012 Score=45.21 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.....|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 355789999999999999999887654
No 371
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.39 E-value=0.011 Score=48.60 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 372
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.39 E-value=0.0089 Score=44.36 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.--|+|+|.+|+|||+|...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999988763
No 373
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.39 E-value=0.031 Score=44.19 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=30.5
Q ss_pred HhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 40 KREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 40 ~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
+..+++.+.|..... ........|+|+|.+|+|||||..++...
T Consensus 6 ~~~~~l~~~l~~~~~-~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 6 PLVNRLQDAFSAIGQ-NADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHHHTTSCC-CTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCC-CCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 335666666644321 01235678999999999999999888754
No 374
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.39 E-value=0.0084 Score=48.55 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..++++|.|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999888743
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.37 E-value=0.0086 Score=43.64 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678999999999999998886543
No 376
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.37 E-value=0.011 Score=43.90 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45678999999999999998887543
No 377
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.37 E-value=0.0087 Score=43.13 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999887643
No 378
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.37 E-value=0.12 Score=52.80 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcChhHHHHHhhhCCCC----CCCCCCCHHHHHHHHHhh
Q 039853 41 REEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDKTVNSIHNTISPET----ASASDDNLNSLQVKLKSG 116 (206)
Q Consensus 41 ~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~l~~~ 116 (206)
|...+++.++.... -+.++|++|.|||++|+. ++....... ......+...++..+...
T Consensus 1255 R~~~ll~~~l~~~~--------~vLL~GPpGtGKT~la~~---------~l~~~~~~~~~~infsa~ts~~~~~~~i~~~ 1317 (2695)
T 4akg_A 1255 KHEKIFYDLLNSKR--------GIILCGPPGSGKTMIMNN---------ALRNSSLYDVVGINFSKDTTTEHILSALHRH 1317 (2695)
T ss_dssp HHHHHHHHHHHHTC--------EEEEECSTTSSHHHHHHH---------HHHSCSSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC--------eEEEECCCCCCHHHHHHH---------HHhcCCCCceEEEEeecCCCHHHHHHHHHHH
Q ss_pred h---------------CCceEEEEEcCCCCCCcc------cHHHHHhhcccCC------------CCcEEEEeCCChH--
Q 039853 117 L---------------SRKKFQLASGDMWKDKYV------DWTNQRVLFVAVA------------SRRKVIVTTRNQG-- 161 (206)
Q Consensus 117 l---------------~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~IiiTTR~~~-- 161 (206)
+ .++++++.+||++....+ ..+.++..+..++ .+..+|-++....
T Consensus 1318 ~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~g 1397 (2695)
T 4akg_A 1318 TNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDP 1397 (2695)
T ss_dssp BCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTST
T ss_pred hhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccC
Q ss_pred -----HHHhcCCCCceeCCCCCHHHHHHHHhhc
Q 039853 162 -----VTSIMGTMPAYELKKLVNDSCRLIFSQH 189 (206)
Q Consensus 162 -----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 189 (206)
-....+...++.++..+.++-..+|...
T Consensus 1398 GR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~i 1430 (2695)
T 4akg_A 1398 GRIPMSERFTRHAAILYLGYPSGKSLSQIYEIY 1430 (2695)
T ss_dssp TCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHH
T ss_pred CCccCChhhhheeeEEEeCCCCHHHHHHHHHHH
No 379
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.36 E-value=0.0099 Score=48.98 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...++|+|..|+|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999877543
No 380
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.36 E-value=0.012 Score=42.99 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999888754
No 381
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.35 E-value=0.01 Score=42.99 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.--|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999998887543
No 382
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.35 E-value=0.012 Score=42.72 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC
Confidence 34678999999999999998887543
No 383
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.34 E-value=0.0097 Score=45.83 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
.....|++.|..|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999988776543
No 384
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.34 E-value=0.0098 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-.++.|.|.+|+|||+||..++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999776543
No 385
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.33 E-value=0.0072 Score=45.74 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999888664
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.32 E-value=0.01 Score=44.00 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999998887654
No 387
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.32 E-value=0.01 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++|+|..|+|||||.+.+....
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3699999999999999999987743
No 388
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.32 E-value=0.0095 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.++.-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999886554
No 389
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.31 E-value=0.0096 Score=50.83 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999887653
No 390
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.31 E-value=0.015 Score=42.79 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999776544
No 391
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.31 E-value=0.026 Score=45.12 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+++|.+.+..-.. .......|+|+|.+|+|||||..++....
T Consensus 7 ~~~l~~~~~~~~~--~~~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 7 INKLQDVFNTLGS--DPLDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp HHHHHHHTTTSSS--CTTCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCC--CCCCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 5556665532221 12356789999999999999998886553
No 392
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.30 E-value=0.019 Score=46.91 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...+++|+|.+|+|||||...+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988864
No 393
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.30 E-value=0.013 Score=47.10 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999888765
No 394
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.28 E-value=0.012 Score=43.62 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||+|...+.+..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999998877754
No 395
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.28 E-value=0.0095 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999988764
No 396
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.26 E-value=0.014 Score=42.41 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.--|+++|.+|+|||||...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999887644
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.25 E-value=0.014 Score=42.93 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4567899999999999999887654
No 398
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.25 E-value=0.013 Score=43.52 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45678999999999999998876543
No 399
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.25 E-value=0.01 Score=48.86 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=41.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChhHHH---------------HHhhhCCCCC---CCCCCCHHHHHHHHHhhhC-Cc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKTVNS---------------IHNTISPETA---SASDDNLNSLQVKLKSGLS-RK 120 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------i~~~~~~~~~---~~~~~~~~~~~~~l~~~l~-~k 120 (206)
.-+++.|.|.+|+||||||..++....... ....++.... .....+.++..+.+..... .+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 346899999999999999988765432211 2333321110 0112234455444444443 35
Q ss_pred eEEEEEcCCCC
Q 039853 121 KFQLASGDMWK 131 (206)
Q Consensus 121 r~LlVlDdv~~ 131 (206)
.-++|+|.+..
T Consensus 140 ~~lIVIDsl~~ 150 (349)
T 2zr9_A 140 LDIIVIDSVAA 150 (349)
T ss_dssp CSEEEEECGGG
T ss_pred CCEEEEcChHh
Confidence 67999998763
No 400
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.24 E-value=0.014 Score=42.54 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999887654
No 401
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.23 E-value=0.04 Score=46.69 Aligned_cols=26 Identities=31% Similarity=0.288 Sum_probs=22.7
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHhc
Q 039853 58 DGGLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 58 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35778999999999999999988775
No 402
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.22 E-value=0.011 Score=44.34 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999998887543
No 403
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.21 E-value=0.013 Score=42.74 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.--|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999998887543
No 404
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.20 E-value=0.012 Score=43.67 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578899999999999999887654
No 405
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.20 E-value=0.013 Score=42.46 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999998876543
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.19 E-value=0.01 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999888754
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.18 E-value=0.014 Score=43.22 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..-|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999888654
No 408
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.17 E-value=0.0078 Score=52.03 Aligned_cols=26 Identities=4% Similarity=-0.171 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|.+.|++|+||||+|+.+....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHHH
Confidence 34789999999999999999876654
No 409
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.17 E-value=0.018 Score=46.27 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++++|++|+|||||.+.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 589999999999999999877 44
No 410
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.17 E-value=0.016 Score=42.83 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..-|+|+|.+|+|||||...+....
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCC
Confidence 4679999999999999999886543
No 411
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.011 Score=43.69 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578999999999999998886543
No 412
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.16 E-value=0.039 Score=45.14 Aligned_cols=46 Identities=9% Similarity=-0.092 Sum_probs=31.1
Q ss_pred ceeeecccchhhhHHhHHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 26 QLFARQQQIQADMKKREEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 26 ~~~Gr~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+.|-... ...|-+.+..-. .-.++.|.|.+|+||||||..++...
T Consensus 25 ~~~gi~TG--------~~~LD~~~gGl~------~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 25 EVTGIPTG--------FVQLDNYTSGFN------KGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CCCSBCCS--------CHHHHHHHCSBC------TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcCcccCC--------ChHHHHHhcCCC------CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44565666 555555553211 23689999999999999998776553
No 413
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.011 Score=44.36 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999887654
No 414
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.15 E-value=0.018 Score=43.09 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||+|...+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999887644
No 415
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.15 E-value=0.019 Score=54.97 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|..|.|||||++.+..-.
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999886544
No 416
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.14 E-value=0.012 Score=43.78 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678999999999999999887654
No 417
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.14 E-value=0.011 Score=43.53 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 44678999999999999998887654
No 418
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.13 E-value=0.015 Score=42.65 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999887644
No 419
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.12 E-value=0.014 Score=43.58 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.--|+|+|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999877654
No 420
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.12 E-value=0.011 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-|+|+|.+|+|||+|...+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999877644
No 421
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.12 E-value=0.034 Score=51.35 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~ 82 (206)
.-.+++|.|+.|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 45799999999999999998764
No 422
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.11 E-value=0.011 Score=45.32 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=16.9
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 039853 64 TPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~ 84 (206)
|+|.|.||+||||+|..++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~ 23 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKI 23 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 566999999999998766543
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.017 Score=41.75 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45578999999999999998876543
No 424
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.09 E-value=0.02 Score=44.16 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 039853 64 TPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~ 84 (206)
+.|+|+.|.|||.+|..+...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 788999999999998766543
No 425
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.019 Score=43.60 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...-|+|+|.+|+|||+|...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999988864
No 426
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.08 E-value=0.01 Score=44.82 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
..+|+|.|+.|+||||+|+.++....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999877653
No 427
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.08 E-value=0.013 Score=44.20 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999887654
No 428
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.08 E-value=0.014 Score=43.25 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45789999999999999998886543
No 429
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.07 E-value=0.024 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.-.++.|+|.+|+|||+||..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999977654
No 430
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.07 E-value=0.016 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3679999999999999999887653
No 431
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.07 E-value=0.012 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..-|+|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999998886543
No 432
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.07 E-value=0.012 Score=44.84 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
-..|++.|+.|+||||+++.+.....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998876553
No 433
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.05 E-value=0.011 Score=48.51 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+++|.|+.|+|||||.+.++.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 58999999999999999988643
No 434
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.04 E-value=0.005 Score=51.43 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 42 EEGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 42 ~~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
--+.++.+..-. +-..++|+|.+|+|||+|+..+.+..
T Consensus 162 GiraID~l~Pig------rGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 162 STRLIDLFAPIG------KGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHHSCCB------TTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cchhhhhccccc------CCceEEEecCCCCChhHHHHHHHHHH
Confidence 345566665432 23578999999999999998887654
No 435
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.03 E-value=0.013 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999998864
No 436
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.01 E-value=0.013 Score=56.03 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||++.++.-.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 579999999999999999997654
No 437
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.00 E-value=0.017 Score=42.58 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999987654
No 438
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.00 E-value=0.016 Score=42.21 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999887653
No 439
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.99 E-value=0.012 Score=43.29 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999887664
No 440
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.99 E-value=0.016 Score=47.88 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCCCCCCeeEEEEEcCCCchHHHHHHHH
Q 039853 43 EGTVELILKDDSECNDGGLSVTPVIGMGGSGNTTLALPV 81 (206)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v 81 (206)
++|.+.|..+.. ...+..-|.|.|.||+||||+++.+
T Consensus 17 ~~Id~~l~~~~~--~~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 17 KMIDRNLREDGE--RSARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp ----------------CCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHhHH--HhcCccEEEEECCCCCcHHHHHHHH
Confidence 334444444332 2234567899999999999999764
No 441
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.99 E-value=0.015 Score=51.44 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+|.|.|++|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999887654
No 442
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.014 Score=42.98 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456899999999999999887643
No 443
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.98 E-value=0.018 Score=42.26 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678999999999999998876543
No 444
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.97 E-value=0.012 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.+++|+|+.|+|||||++.++...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhh
Confidence 3689999999999999999887654
No 445
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.97 E-value=0.013 Score=43.63 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999998876543
No 446
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.97 E-value=0.016 Score=42.84 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcC
Q 039853 62 SVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
+-+.|.|.+|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57899999999999999887654
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.97 E-value=0.017 Score=42.37 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999888654
No 448
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.96 E-value=0.013 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVY 82 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~ 82 (206)
-.++.|+|.+|+|||||+..++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 4699999999999999998553
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.96 E-value=0.018 Score=42.24 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45678999999999999998887543
No 450
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.96 E-value=0.018 Score=44.73 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999998886543
No 451
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.96 E-value=0.012 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
-|+|+|.+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999997654
No 452
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.94 E-value=0.019 Score=47.40 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=21.9
Q ss_pred CCCeeEEEEEc-CCCchHHHHHHHHhcCh
Q 039853 58 DGGLSVTPVIG-MGGSGNTTLALPVYNDK 85 (206)
Q Consensus 58 ~~~~~vi~I~G-~gGiGKTtLA~~v~~~~ 85 (206)
....++|+|+| .||+||||+|..++...
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHH
Confidence 45678898885 99999999987765443
No 453
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.94 E-value=0.019 Score=42.26 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568999999999999998887543
No 454
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.94 E-value=0.016 Score=50.78 Aligned_cols=27 Identities=15% Similarity=0.023 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
...+|.|.|++|+||||+|+.+.....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999998876643
No 455
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.94 E-value=0.014 Score=48.12 Aligned_cols=25 Identities=32% Similarity=0.386 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-+++.|.|.+|+||||||..++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998776543
No 456
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.93 E-value=0.016 Score=48.89 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...+++++|.+|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999988776544
No 457
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.92 E-value=0.011 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998864
No 458
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.92 E-value=0.012 Score=48.52 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhcChhH
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDKTV 87 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 87 (206)
..++|+|+.|+|||||++.+......
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 48999999999999999998876543
No 459
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.91 E-value=0.055 Score=44.92 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=19.7
Q ss_pred CCeeEEEEE-cCCCchHHHHHHHHhcC
Q 039853 59 GGLSVTPVI-GMGGSGNTTLALPVYND 84 (206)
Q Consensus 59 ~~~~vi~I~-G~gGiGKTtLA~~v~~~ 84 (206)
...++|+|+ |.||+||||+|..++..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 456788777 79999999987665543
No 460
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.91 E-value=0.018 Score=47.33 Aligned_cols=26 Identities=35% Similarity=0.285 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++.+.|.||+||||+|..++...
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 45899999999999999887665443
No 461
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.014 Score=42.93 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||+|...+...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999888755
No 462
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.89 E-value=0.12 Score=42.57 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 039853 63 VTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 63 vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.+.|.|.+|.||+++|+.++..
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred hheEEeCCCchHHHHHHHHHHh
Confidence 4779999999999999988654
No 463
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.89 E-value=0.051 Score=46.09 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
-.++.|.|.+|+||||||..++....
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999987765543
No 464
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.88 E-value=0.015 Score=43.23 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.5
Q ss_pred eEEEEE-cCCCchHHHHHHHHhcChh
Q 039853 62 SVTPVI-GMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 62 ~vi~I~-G~gGiGKTtLA~~v~~~~~ 86 (206)
++|+|+ +.||+||||+|..++....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la 27 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS 27 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 577787 6899999999977765543
No 465
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.021 Score=42.02 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999887653
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.88 E-value=0.017 Score=43.40 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999988764
No 467
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.015 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999998887654
No 468
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.86 E-value=0.045 Score=46.21 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....++|+|.+|+|||||...+....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999987664
No 469
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.85 E-value=0.0088 Score=43.53 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=11.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEEECCCCC-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 35678999999999999998877543
No 470
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.82 E-value=0.016 Score=43.11 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 039853 64 TPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 64 i~I~G~gGiGKTtLA~~v~~~ 84 (206)
+.|+|.+|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999988755
No 471
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.81 E-value=0.05 Score=44.57 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.....++++|.+|+|||||...+....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999887654
No 472
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.81 E-value=0.015 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..-|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999998876543
No 473
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.81 E-value=0.023 Score=45.64 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+...|+|+|.+|+|||||...+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999998887553
No 474
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.80 E-value=0.018 Score=46.46 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.-.++.|+|.+|+|||+||..++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999977653
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.79 E-value=0.014 Score=45.28 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcChh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDKT 86 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 86 (206)
....|+|.|+.|+||||+++.+.....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999998876553
No 476
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.79 E-value=0.017 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHhc
Q 039853 62 SVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
.+++|+|+.|+|||||.+.++.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999998874
No 477
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.78 E-value=0.027 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|++|+|||||.+.+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 589999999999999999887654
No 478
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.78 E-value=0.016 Score=46.91 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHhc
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
-.++.|+|.+|+|||+||..++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHH
Confidence 46999999999999999977654
No 479
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.74 E-value=0.05 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.++.|.|.+|+|||+||..++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998776554
No 480
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.73 E-value=0.032 Score=47.02 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|+.|+|||||.+.+....
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999998876543
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.72 E-value=0.017 Score=43.62 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
.--|+|+|.+|+|||+|...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999887654
No 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.71 E-value=0.049 Score=46.18 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-.++.|.|.+|+|||+||..++.+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHH
Confidence 4689999999999999998776554
No 483
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.70 E-value=0.022 Score=42.45 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
...-|+|+|.+|+|||||...+....
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 45678999999999999998886544
No 484
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.62 E-value=0.012 Score=45.39 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcChhHH
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDKTVN 88 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 88 (206)
-..|+|.|+.|+||||+++.+++.....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999988776443
No 485
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.60 E-value=0.02 Score=47.23 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|.+|+|||||...+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 489999999999999999877654
No 486
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.60 E-value=0.027 Score=42.63 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhc
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYN 83 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~ 83 (206)
...+|+|+|++|+||+++|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999977654
No 487
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.59 E-value=0.02 Score=44.67 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=19.7
Q ss_pred CCeeEEEEE-cCCCchHHHHHHHHhcCh
Q 039853 59 GGLSVTPVI-GMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 59 ~~~~vi~I~-G~gGiGKTtLA~~v~~~~ 85 (206)
...++|+|+ +.||+||||+|..++...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence 356788875 689999999987665444
No 488
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.59 E-value=0.021 Score=41.80 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..-|+|+|.+|+|||||...+....
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~ 46 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGD 46 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3679999999999999999886543
No 489
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.57 E-value=0.024 Score=46.30 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcC
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
..+++.+.|.||+||||+|..++..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~ 39 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQ 39 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHH
Confidence 3478889999999999988766533
No 490
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.51 E-value=0.027 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcC
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYND 84 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~ 84 (206)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999998764
No 491
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.49 E-value=0.027 Score=44.09 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
....|+++|.+|+|||||...+....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC
Confidence 34678999999999999999887643
No 492
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.48 E-value=0.037 Score=45.35 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+++...|.||+||||+|..++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 44677777999999999987765443
No 493
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.47 E-value=0.02 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
.+++|+|..|+|||||.+.+....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999998886554
No 494
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.46 E-value=0.027 Score=43.11 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=19.0
Q ss_pred CeeEEEEE-cCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVI-GMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~-G~gGiGKTtLA~~v~~~~ 85 (206)
..++|+|+ +.||+||||+|..++...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l 29 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL 29 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH
Confidence 34677777 478999999887665443
No 495
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.44 E-value=0.032 Score=43.34 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..-.|+|+|.+|+|||||...+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 44678999999999999998887654
No 496
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.43 E-value=0.023 Score=43.72 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..+|+|.|+.|+||||+|+.++...
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3699999999999999999887654
No 497
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.42 E-value=0.026 Score=44.20 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhcCh
Q 039853 62 SVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 62 ~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.|+++|.+|+|||||...+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999887653
No 498
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.022 Score=43.17 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
..--|+|+|.+|+|||||...+....
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 44678999999999999998876543
No 499
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.39 E-value=0.025 Score=46.72 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 60 GLSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 60 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
+.++|+|+|.+|+|||||...+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46679999999999999999988765
No 500
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.36 E-value=0.021 Score=43.64 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHhcCh
Q 039853 61 LSVTPVIGMGGSGNTTLALPVYNDK 85 (206)
Q Consensus 61 ~~vi~I~G~gGiGKTtLA~~v~~~~ 85 (206)
-..|++.|+.|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999877654
Done!