Query 039855
Match_columns 198
No_of_seqs 126 out of 841
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0m_A Cysteine desulfuration 100.0 8.1E-53 2.8E-57 338.3 13.8 133 59-198 7-140 (141)
2 1ni7_A ER75, hypothetical prot 100.0 6.3E-52 2.2E-56 337.9 8.8 139 49-197 7-146 (155)
3 1wlo_A SUFE protein; structura 100.0 1.7E-50 5.7E-55 323.0 10.1 130 58-197 2-132 (136)
4 3lvl_A NIFU-like protein; prot 93.1 2.2 7.5E-05 32.7 12.1 69 102-182 34-106 (129)
5 4eb5_C NIFU protein (NIFU-1); 92.1 2.9 9.8E-05 33.3 11.9 91 81-182 5-101 (153)
6 2qq4_A Iron-sulfur cluster bio 86.2 6.7 0.00023 30.2 9.7 82 77-160 6-94 (138)
7 2z7e_A ISCU protein, NIFU-like 84.7 11 0.00037 30.0 10.4 102 80-192 7-120 (157)
8 1su0_B NIFU like protein ISCU; 77.0 23 0.00077 28.0 9.8 83 77-160 8-95 (159)
9 1xjs_A NIFU-like protein; SR17 62.0 22 0.00076 27.6 6.6 82 77-160 9-96 (147)
10 4dzt_A Aqualysin-1, aqualysin- 34.0 24 0.00082 29.1 2.8 34 122-155 216-250 (276)
11 1to2_E Subtilisin BPN'; serine 33.4 30 0.001 28.8 3.3 33 122-154 215-248 (281)
12 1sh7_A Extracellular subtilisi 30.5 29 0.001 29.0 2.8 33 122-154 214-247 (284)
13 2b6n_A Proteinase K; S binding 29.1 32 0.0011 28.5 2.8 33 122-154 218-251 (278)
14 1r0r_E Subtilisin carlsberg; h 28.7 34 0.0012 28.3 2.8 33 122-154 214-247 (274)
15 2ixt_A 36KDA protease; serine 28.5 34 0.0012 28.5 2.8 34 122-155 244-278 (310)
16 3hjr_A Extracellular serine pr 26.7 35 0.0012 31.3 2.8 31 124-154 332-363 (600)
17 2x8j_A Intracellular subtilisi 25.4 85 0.0029 26.6 4.8 35 120-154 242-282 (327)
18 2iy9_A SUBA; toxin, shiga, pla 25.1 41 0.0014 28.6 2.7 33 122-154 266-299 (347)
19 3mxn_A RECQ-mediated genome in 24.9 1.3E+02 0.0045 24.0 5.5 61 107-195 56-117 (157)
20 4h6w_A N-terminal cyanobactin 24.0 56 0.0019 27.0 3.3 33 122-154 218-255 (306)
21 1gci_A Subtilisin; hydrolase, 23.8 46 0.0016 27.5 2.8 32 123-154 210-242 (269)
22 3f7m_A Alkaline serine proteas 23.2 38 0.0013 27.9 2.1 32 122-154 219-251 (279)
23 3zxy_A Subtilisin-like protein 22.9 61 0.0021 26.6 3.3 34 121-154 204-242 (282)
24 1p8j_A Furin precursor; prohor 21.8 50 0.0017 29.5 2.8 33 123-155 256-289 (471)
25 3t41_A Epidermin leader peptid 21.5 52 0.0018 29.1 2.8 33 122-154 401-435 (471)
26 2dk7_A Transcription elongatio 20.9 71 0.0024 22.5 2.8 23 100-126 14-36 (73)
27 4h08_A Putative hydrolase; GDS 20.8 38 0.0013 25.5 1.5 24 121-147 22-45 (200)
28 2gjv_A Putative cytoplasmic pr 20.6 80 0.0027 25.8 3.4 28 100-127 117-147 (175)
29 3lpc_A APRB2; protease, subtil 20.1 69 0.0024 26.9 3.2 31 124-154 272-307 (340)
No 1
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=100.00 E-value=8.1e-53 Score=338.33 Aligned_cols=133 Identities=17% Similarity=0.370 Sum_probs=128.6
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCccccccccccCCcccceeeEEEEccCCeEEEEEeCChhhHHHHHH
Q 039855 59 STKLQLLVSEFDSLTEPIDRVKRLLDYAAVLPGLDESGRVQAKKVAGCATQVWLEVVMDERGRMRFRADSDSEISKGFCS 138 (198)
Q Consensus 59 ~~~l~~iie~F~~l~dwe~Ry~~LI~lgk~Lp~lpe~~rt~~n~V~GCqS~VWL~~~~~~dg~v~F~aDSDA~IvKGLlA 138 (198)
++++++|+++|+.++||++||+|||+|||+||+|||++|+++|+|+||||+|||.++.++||+++|+|||||.|||||+|
T Consensus 7 ~~~~~~ii~~F~~~~~we~Ry~~LI~lgk~Lp~lpe~~k~~~~~V~GCqS~VWl~~~~~~~g~l~f~adSDA~IvkGl~a 86 (141)
T 3g0m_A 7 LPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQNTIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKGLMA 86 (141)
T ss_dssp SCCHHHHHHHHHTCCSHHHHHHHHHHHHHTSCCCCGGGCSGGGBCCSSSSCEEEEEEECTTSBEEEEEEESSHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCHHHcCccCcCCCCccCeeEEEEEcCCCEEEEEecCccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999987789999999999999999999
Q ss_pred HHHHHhcCCChHHHhcCCh-hHHHhcCccccccccCCCCCCcchHHHHHHHHHHHHHHhcC
Q 039855 139 CLIMVLDGAEPEEVLGFKT-EDLTEMNVGVGVSHVGIKAGASRVNTWQNVLLAMQKRTRCL 198 (198)
Q Consensus 139 LLl~~lnG~tpeEIl~~d~-~~l~~lgL~~~Ls~~~~~~SpsR~NGl~ail~~ikk~a~~l 198 (198)
||+.+|||+||+||+++|+ +|+.++||.+|| ||+|.|||.||+++||++|+++
T Consensus 87 lL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~L-------SpsR~nGl~am~~~ik~~a~~~ 140 (141)
T 3g0m_A 87 VVFILYHQMTAQDIVHFDVRPWFEKMALAQHL-------TPSRSQGLEAMIRAIRAKAATL 140 (141)
T ss_dssp HHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGS-------CHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCHHHHHhCCHHHHHHHcCchhhc-------CchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 788999999999 9999999999999999999875
No 2
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=100.00 E-value=6.3e-52 Score=337.94 Aligned_cols=139 Identities=27% Similarity=0.435 Sum_probs=131.7
Q ss_pred CCCCCCcCCchHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCccccccccccCCcccceeeEEEEccCCeEEEEEeC
Q 039855 49 ERNPEPIATTSTKLQLLVSEFDSLTEPIDRVKRLLDYAAVLPGLDESGRVQAKKVAGCATQVWLEVVMDERGRMRFRADS 128 (198)
Q Consensus 49 ~~~p~~~~~~~~~l~~iie~F~~l~dwe~Ry~~LI~lgk~Lp~lpe~~rt~~n~V~GCqS~VWL~~~~~~dg~v~F~aDS 128 (198)
.++|++ .+.++++|+++|+.++||++||+|||+|||+||+|||++|+++|+|+||||+|||.++.++||+++|.|||
T Consensus 7 ~~~~~~---~~~~~~~iv~~F~~~~dwedRy~~LI~lgk~Lp~lpe~~k~~~~~V~GCqS~VWl~~~~~~dg~l~F~adS 83 (155)
T 1ni7_A 7 AGHPFG---TTVTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDS 83 (155)
T ss_dssp CCCCTT---SSSCHHHHHHHHTTCCSHHHHHHHHHHHHHHSCCCCHHHHHHSEEECSSSSCEEEECCCCSSSCCCCEEEE
T ss_pred CCCCCC---CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCChHHcCccCcCCCCccCeeEEEEEcCCCEEEEeeCC
Confidence 557777 55689999999999999999999999999999999999999999999999999999876568999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCChHHHhcCChh-HHHhcCccccccccCCCCCCcchHHHHHHHHHHHHHHhc
Q 039855 129 DSEISKGFCSCLIMVLDGAEPEEVLGFKTE-DLTEMNVGVGVSHVGIKAGASRVNTWQNVLLAMQKRTRC 197 (198)
Q Consensus 129 DA~IvKGLlALLl~~lnG~tpeEIl~~d~~-~l~~lgL~~~Ls~~~~~~SpsR~NGl~ail~~ikk~a~~ 197 (198)
||.|||||+|||+.+|||+||+||+++|++ |+.++||.+|| ||+|.|||.||+++||++|++
T Consensus 84 DA~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~L-------SpsR~NGl~am~~~ik~~a~~ 146 (155)
T 1ni7_A 84 EGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQL-------SASRSQGLNALSEAIIAATKQ 146 (155)
T ss_dssp SSHHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSS-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhc-------CchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 88999999999 999999999999999999975
No 3
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=100.00 E-value=1.7e-50 Score=323.03 Aligned_cols=130 Identities=24% Similarity=0.313 Sum_probs=125.0
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHhcCCCCCCccccccccccCCcccceeeEEEEccCC-eEEEEEeCChhhHHHH
Q 039855 58 TSTKLQLLVSEFDSLTEPIDRVKRLLDYAAVLPGLDESGRVQAKKVAGCATQVWLEVVMDERG-RMRFRADSDSEISKGF 136 (198)
Q Consensus 58 ~~~~l~~iie~F~~l~dwe~Ry~~LI~lgk~Lp~lpe~~rt~~n~V~GCqS~VWL~~~~~~dg-~v~F~aDSDA~IvKGL 136 (198)
+++++++|+++|+.+ +|++||+|||+|||+||+|||++ ++|+|+||||+|||.++.+++| +++|.|||||.|||||
T Consensus 2 ~~~~~~~ii~~F~~~-~~e~Ry~~LI~lgk~Lp~lpe~~--~~~~V~GCqS~VWl~~~~~~~g~~l~f~~dSDA~IvkGl 78 (136)
T 1wlo_A 2 VPPKLKQALELFKSL-PKELRSQVLLEYAAKVPPPPPGV--ELERVHECQTPFFVHADVEGGKVRLYFHVPDEAPTVKAF 78 (136)
T ss_dssp CCHHHHHHHHHHHHS-CHHHHHHHHHHHHHTCCCCCSSC--CCEECTTSSSCCEEEEEEETTEEEEEEECSSCCHHHHHH
T ss_pred ccHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCChhh--hhccCCCCccCeEEEEEEeCCceEEEEecCCccHHHHHH
Confidence 568999999999999 99999999999999999999999 9999999999999999876666 8999999999999999
Q ss_pred HHHHHHHhcCCChHHHhcCChhHHHhcCccccccccCCCCCCcchHHHHHHHHHHHHHHhc
Q 039855 137 CSCLIMVLDGAEPEEVLGFKTEDLTEMNVGVGVSHVGIKAGASRVNTWQNVLLAMQKRTRC 197 (198)
Q Consensus 137 lALLl~~lnG~tpeEIl~~d~~~l~~lgL~~~Ls~~~~~~SpsR~NGl~ail~~ikk~a~~ 197 (198)
+|||+.+|||+||+||+++|++|+.++||.+|| ||+|.|||.||+++||++|++
T Consensus 79 ~alL~~~~~G~tp~eIl~~d~~~~~~lGL~~~L-------SpsR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 79 AGLLREGLEGESPEAVLEVPPGFYRGYGLEEFF-------TPLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp HHHHHHTTTTCCTTTTTSSCTTTTTTTTSHHHH-------THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHhCCHHHHHHcCchhhc-------CchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999999 999999999999999999975
No 4
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=93.07 E-value=2.2 Score=32.73 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=52.2
Q ss_pred ccCCcccceeeEEEEccCCe---EEEEEeCChhhHHHHHHHHHHHhcCCChHHHhcCChhHH-HhcCccccccccCCCCC
Q 039855 102 KVAGCATQVWLEVVMDERGR---MRFRADSDSEISKGFCSCLIMVLDGAEPEEVLGFKTEDL-TEMNVGVGVSHVGIKAG 177 (198)
Q Consensus 102 ~V~GCqS~VWL~~~~~~dg~---v~F~aDSDA~IvKGLlALLl~~lnG~tpeEIl~~d~~~l-~~lgL~~~Ls~~~~~~S 177 (198)
.-+-|-..|-|.+.++++|+ +.|.++.= .|...-.+++.+.+-|+|.+|++.+..+.+ ..|| | .
T Consensus 34 ~np~CGD~i~l~l~v~~~~~I~d~~f~~~GC-ais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~----l-------~ 101 (129)
T 3lvl_A 34 GAPACGDVMKLQIKVNDEGIIEDARFKTYGC-GSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE----L-------P 101 (129)
T ss_dssp ECTTTCCEEEEEEEECSSSCEEEEEEEEESC-HHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHT----C-------C
T ss_pred cCCCCCCEEEEEEEECCCCeEEEEEEEecCC-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----C-------C
Confidence 34579999988888864465 44544433 566778999999999999999999998776 4554 5 7
Q ss_pred CcchH
Q 039855 178 ASRVN 182 (198)
Q Consensus 178 psR~N 182 (198)
|.|..
T Consensus 102 p~r~~ 106 (129)
T 3lvl_A 102 PVKIH 106 (129)
T ss_dssp GGGGH
T ss_pred ccchh
Confidence 88876
No 5
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=92.10 E-value=2.9 Score=33.33 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHhcCCCC---CCccccccccccCCcccceeeEEEEccCCe-EEEEEeCCh-hhHHHHHHHHHHHhcCCChHHHhcC
Q 039855 81 RLLDYAAVLPG---LDESGRVQAKKVAGCATQVWLEVVMDERGR-MRFRADSDS-EISKGFCSCLIMVLDGAEPEEVLGF 155 (198)
Q Consensus 81 ~LI~lgk~Lp~---lpe~~rt~~n~V~GCqS~VWL~~~~~~dg~-v~F~aDSDA-~IvKGLlALLl~~lnG~tpeEIl~~ 155 (198)
.|+++.++-.. +++...+....-+-|-..|-|.+.++ +|+ ..+..+... .|...=.+++.+.+-|+|.+|++.+
T Consensus 5 ~Ildh~~nPrn~G~l~~~d~~~~~~nP~CGD~i~l~lkv~-d~~I~D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i 83 (153)
T 4eb5_C 5 KVFDHFQNPRNVGKIEDADGVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKI 83 (153)
T ss_dssp HHHHHHHSCSSBSCCSSCSEEEEEECTTTCCEEEEEEEES-SSBEEEEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTC
T ss_pred HHHHHHhCCCCCCCCCCCCeEEEeCCCCCCCEEEEEEEec-CCeEEEEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 45666655443 44333344445567999998888885 565 233334443 5667779999999999999999999
Q ss_pred ChhHHH-hcCccccccccCCCCCCcchH
Q 039855 156 KTEDLT-EMNVGVGVSHVGIKAGASRVN 182 (198)
Q Consensus 156 d~~~l~-~lgL~~~Ls~~~~~~SpsR~N 182 (198)
..+++. .|| .| .|.|..
T Consensus 84 ~~~~i~~~L~---gl-------pp~Ri~ 101 (153)
T 4eb5_C 84 TRDAVAEALG---GL-------PKQKMH 101 (153)
T ss_dssp CHHHHHHHHT---CC-------CTTSHH
T ss_pred hHHHHHHHhc---CC-------CcchhH
Confidence 887764 442 24 789976
No 6
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=86.16 E-value=6.7 Score=30.25 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=57.5
Q ss_pred HHHH-HHHHHhcCCCC---CCccccccccccCCcccceeeEEEEccCCe---EEEEEeCChhhHHHHHHHHHHHhcCCCh
Q 039855 77 DRVK-RLLDYAAVLPG---LDESGRVQAKKVAGCATQVWLEVVMDERGR---MRFRADSDSEISKGFCSCLIMVLDGAEP 149 (198)
Q Consensus 77 ~Ry~-~LI~lgk~Lp~---lpe~~rt~~n~V~GCqS~VWL~~~~~~dg~---v~F~aDSDA~IvKGLlALLl~~lnG~tp 149 (198)
+-|+ .++++.++... +++...+....-.-|-..|-|.+.++ +|+ +.|.++.= .|...=.+++.+.+-|+|.
T Consensus 6 ~lY~~~Ildh~~nP~n~G~l~~~~~~~~~~np~CGD~i~l~l~v~-~~~I~d~~f~~~GC-ais~ASaS~~te~i~Gkt~ 83 (138)
T 2qq4_A 6 ELYREILLDHYQSPRNFGVLPQATKQAGGMNPSCGDQVEVMVLLE-GDTIADIRFQGQGC-AISTASASLMTEAVKGKKV 83 (138)
T ss_dssp HHHHHHHHHHHHSCTTBSCCTTCSEEEEEECTTTCCEEEEEEEEE-TTEEEEEEEEEECC-HHHHHHHHHHHHHHTTSBH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCeEEeeCCCCCCCEEEEEEEEC-CCEEEEEEEEecCC-HHHHHHHHHHHHHHcCCcH
Confidence 4454 45777776654 33333333445577999999988885 676 34444432 6777789999999999999
Q ss_pred HHHhcCChhHH
Q 039855 150 EEVLGFKTEDL 160 (198)
Q Consensus 150 eEIl~~d~~~l 160 (198)
+|++.+...|.
T Consensus 84 ~ea~~i~~~~~ 94 (138)
T 2qq4_A 84 AEALELSRKFQ 94 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887664
No 7
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=84.74 E-value=11 Score=29.98 Aligned_cols=102 Identities=15% Similarity=0.285 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCCC---CccccccccccCCcccceeeEEEEc-cCCe---EEEEEeCChhhHHHHHHHHHHHhcCCChHHH
Q 039855 80 KRLLDYAAVLPGL---DESGRVQAKKVAGCATQVWLEVVMD-ERGR---MRFRADSDSEISKGFCSCLIMVLDGAEPEEV 152 (198)
Q Consensus 80 ~~LI~lgk~Lp~l---pe~~rt~~n~V~GCqS~VWL~~~~~-~dg~---v~F~aDSDA~IvKGLlALLl~~lnG~tpeEI 152 (198)
+.|+++.++.... ++...+....-.-|-..|-|.+.++ ++|+ +.|.++.= .|...-.+++.+.+-|+|.+|+
T Consensus 7 e~Ildh~~nPrn~G~l~~~d~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GC-ais~ASaS~mte~v~Gkt~~EA 85 (157)
T 2z7e_A 7 EKVLDHFLNPRNVGVLEDANGVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGC-GSAIAVSSMLTEMVKGKPIQYA 85 (157)
T ss_dssp HHHHHHHHSCSSBSCCTTCSEEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESC-TTHHHHHHHHHHHHTTSBHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCeEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCC-HHHHHHHHHHHHHHcCCcHHHH
Confidence 3467777765543 3323333334467999999999885 4675 44554432 5667779999999999999999
Q ss_pred hcCChhHHH-hcCccccccccCCCCCCcchH----HHHHHHHHHH
Q 039855 153 LGFKTEDLT-EMNVGVGVSHVGIKAGASRVN----TWQNVLLAMQ 192 (198)
Q Consensus 153 l~~d~~~l~-~lgL~~~Ls~~~~~~SpsR~N----Gl~ail~~ik 192 (198)
+.+..+.+. .|| .| .|.|.. +|.++-+.|.
T Consensus 86 ~~i~~~~i~e~Lg---~l-------~p~R~~Ca~La~~Al~~Al~ 120 (157)
T 2z7e_A 86 LNLTYKDIFEELG---GL-------PPQKIHCTNLGLETLHVAIK 120 (157)
T ss_dssp HHCCHHHHHHHHT---CC-------CCSSCCTTCCHHHHHHHHHH
T ss_pred HHHHhccHHHHhc---cc-------CcchhHhHHHHHHHHHHHHH
Confidence 999887663 453 13 566654 4445544443
No 8
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=77.05 E-value=23 Score=27.96 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=57.4
Q ss_pred HHHH-HHHHHhcCCCCCCc--cccccccccCCcccceeeEEEEccCCeE-EEEEeCCh-hhHHHHHHHHHHHhcCCChHH
Q 039855 77 DRVK-RLLDYAAVLPGLDE--SGRVQAKKVAGCATQVWLEVVMDERGRM-RFRADSDS-EISKGFCSCLIMVLDGAEPEE 151 (198)
Q Consensus 77 ~Ry~-~LI~lgk~Lp~lpe--~~rt~~n~V~GCqS~VWL~~~~~~dg~v-~F~aDSDA-~IvKGLlALLl~~lnG~tpeE 151 (198)
+-|+ .|+++.++...... ...+....-.-|-..|-|.+.++ +|++ .+..+... .|...=.+++.+.+-|+|.+|
T Consensus 8 ~lY~~~Ildh~~nP~n~G~l~~~~~~~~~np~CGD~i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~E 86 (159)
T 1su0_B 8 HLYMAVVADHSKRPHHHGQLDGVEAVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIGKSKEE 86 (159)
T ss_dssp HHHHHHHHHHHHSCSSBSCCTTCCCEEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEeecCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHH
Confidence 4454 46788877654332 22333334678999999999886 6652 34444444 677778999999999999999
Q ss_pred HhcCChhHH
Q 039855 152 VLGFKTEDL 160 (198)
Q Consensus 152 Il~~d~~~l 160 (198)
++.+...|.
T Consensus 87 a~~i~~~f~ 95 (159)
T 1su0_B 87 ALALADIFS 95 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999866543
No 9
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=62.00 E-value=22 Score=27.56 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=58.4
Q ss_pred HHHH-HHHHHhcCCCCCCc--cccccccccCCcccceeeEEEEccCCe---EEEEEeCChhhHHHHHHHHHHHhcCCChH
Q 039855 77 DRVK-RLLDYAAVLPGLDE--SGRVQAKKVAGCATQVWLEVVMDERGR---MRFRADSDSEISKGFCSCLIMVLDGAEPE 150 (198)
Q Consensus 77 ~Ry~-~LI~lgk~Lp~lpe--~~rt~~n~V~GCqS~VWL~~~~~~dg~---v~F~aDSDA~IvKGLlALLl~~lnG~tpe 150 (198)
+-|+ .|+++.++.....+ ...+....-.-|-..|-|.+.++ +|+ +.|.++.= .|...=.+++.+.+-|+|.+
T Consensus 9 ~lY~~~Ildh~~nP~n~G~l~~~~~~~~~np~CGD~i~l~lkv~-~~~I~d~~f~~~GC-ais~ASaS~mte~v~Gkt~~ 86 (147)
T 1xjs_A 9 TLYRQVIMDHYKNPRNKGVLNDSIVVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGC-SISMASASMMTQAIKGKDIE 86 (147)
T ss_dssp HHHHHHHHHHHHSCCCCCCCCSSEEEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESS-HHHHHHHHHHHHHHTTSBHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEeecCCCCCCEEEEEEEEC-CCeEEEEEEEecCC-HHHHHHHHHHHHHHcCCcHH
Confidence 4565 46888887665443 22233334578999999988885 665 55555433 67777899999999999999
Q ss_pred HHhcCChhHH
Q 039855 151 EVLGFKTEDL 160 (198)
Q Consensus 151 EIl~~d~~~l 160 (198)
|++.+...|.
T Consensus 87 Ea~~i~~~~~ 96 (147)
T 1xjs_A 87 TALSMSKIFS 96 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876653
No 10
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}
Probab=33.99 E-value=24 Score=29.07 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=27.8
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhcC
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLGF 155 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~~ 155 (198)
..+.+.|= +++|-|++|++++.+-..+++||.+.
T Consensus 216 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~ 250 (276)
T 4dzt_A 216 QTLNGTSMATPHVAGVAALYLEQNPSATPASVASA 250 (276)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred EEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 34445555 39999999999999999999999873
No 11
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Probab=33.37 E-value=30 Score=28.76 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=27.2
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
..+.+.|= +++|-|++|+++..+-+.+++||.+
T Consensus 215 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~ 248 (281)
T 1to2_E 215 GAYNGTSMASPHVAGAAALILSKHPNWTNTQVRS 248 (281)
T ss_dssp EEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred EecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34556665 4999999999999999999999875
No 12
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=30.54 E-value=29 Score=29.00 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.1
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
..+.+.|= +++|-|++|++++.+-+.+++||.+
T Consensus 214 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~ 247 (284)
T 1sh7_A 214 KTISGTSMATPHVAGVAALYLQENNGLTPLQLTG 247 (284)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred EEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 34445554 4999999999999999999999876
No 13
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}
Probab=29.12 E-value=32 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=27.1
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
..+.+.|= +++|-|++|+++..+-..+++||.+
T Consensus 218 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~ 251 (278)
T 2b6n_A 218 NTISGTSMASPHVAGVAALYLDENPNLSPAQVTN 251 (278)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34455554 4999999999999999999999876
No 14
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Probab=28.71 E-value=34 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=26.8
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
..+.+.|= +++|-|++|+++..+-..+++||.+
T Consensus 214 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~ 247 (274)
T 1r0r_E 214 ATLNGTSMASPHVAGAAALILSKHPNLSASQVRN 247 (274)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 34445555 4999999999999999999999875
No 15
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Probab=28.48 E-value=34 Score=28.53 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=27.3
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhcC
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLGF 155 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~~ 155 (198)
..+.+.|= +++|-|++|+|+..+-..+++||.++
T Consensus 244 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~ 278 (310)
T 2ixt_A 244 NTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSN 278 (310)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred EeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34445554 49999999999999999999998763
No 16
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=26.65 E-value=35 Score=31.29 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=25.9
Q ss_pred EEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 124 FRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 124 F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
+.+.|= +++|-|++||++++.-+.|++||..
T Consensus 332 ~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~ 363 (600)
T 3hjr_A 332 MNGTSSATPSTSGAMALLMSAYPDLSVRDLRD 363 (600)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHCCCCCHHHHHH
Confidence 334444 4999999999999999999999965
No 17
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Probab=25.37 E-value=85 Score=26.64 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=28.2
Q ss_pred CeEEEEEeCCh-hhHHHHHHHHHHH-----hcCCChHHHhc
Q 039855 120 GRMRFRADSDS-EISKGFCSCLIMV-----LDGAEPEEVLG 154 (198)
Q Consensus 120 g~v~F~aDSDA-~IvKGLlALLl~~-----lnG~tpeEIl~ 154 (198)
+-..+.+.|=| ++|-|++|+++.. .-..+++||.+
T Consensus 242 ~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~ 282 (327)
T 2x8j_A 242 GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYA 282 (327)
T ss_dssp CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHH
Confidence 33566677764 9999999999999 77889988865
No 18
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Probab=25.06 E-value=41 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=27.5
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
..+.+.|= +++|-|++|+++..+-+.+++||.+
T Consensus 266 ~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~ 299 (347)
T 2iy9_A 266 GTGSGTSEATAIVSGVLAAMTSCNPRATATELKR 299 (347)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred EeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 44555565 4999999999999999999999876
No 19
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=24.93 E-value=1.3e+02 Score=23.96 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=43.9
Q ss_pred cccee-eEEEEccCCeEEEEEeCChhhHHHHHHHHHHHhcCCChHHHhcCChhHHHhcCccccccccCCCCCCcchHHHH
Q 039855 107 ATQVW-LEVVMDERGRMRFRADSDSEISKGFCSCLIMVLDGAEPEEVLGFKTEDLTEMNVGVGVSHVGIKAGASRVNTWQ 185 (198)
Q Consensus 107 qS~VW-L~~~~~~dg~v~F~aDSDA~IvKGLlALLl~~lnG~tpeEIl~~d~~~l~~lgL~~~Ls~~~~~~SpsR~NGl~ 185 (198)
+...| |.+..+ ||.-+..+|=++.|.-+++ |.+|+|..+..- .|.+.+.+.
T Consensus 56 ~~~~W~l~a~Is-DGS~~LdV~f~~~VLt~lI--------GfS~~E~~~lkk-------------------dp~~~~~l~ 107 (157)
T 3mxn_A 56 SGGIWSITAKVS-DGTAYLDVDFVDEILTSLI--------GFSVPEMKQSKK-------------------DPLQYQKFL 107 (157)
T ss_dssp GGGSCBCEEEEE-CSSCEEEEEECHHHHHHHH--------SCCHHHHHHHTT-------------------SHHHHHHHH
T ss_pred cCCEEEEEEEEe-CCceeEEEEeeHHHHHhhh--------CCCHHHHHHHhh-------------------CHHHHHHHH
Confidence 55667 667765 8988899999998887776 789998755321 456666677
Q ss_pred HHHHHHHHHH
Q 039855 186 NVLLAMQKRT 195 (198)
Q Consensus 186 ail~~ikk~a 195 (198)
.++.+-|+..
T Consensus 108 e~L~~~Q~~L 117 (157)
T 3mxn_A 108 EGLQKCQRDL 117 (157)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 20
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}
Probab=24.03 E-value=56 Score=27.00 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.9
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHh----cCCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVL----DGAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~l----nG~tpeEIl~ 154 (198)
..+.+.|= +++|-|.+|||+..+ ...+|+||.+
T Consensus 218 ~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~ 255 (306)
T 4h6w_A 218 IRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKN 255 (306)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred eccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 44555665 389999999999876 5678888865
No 21
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*
Probab=23.81 E-value=46 Score=27.47 Aligned_cols=32 Identities=6% Similarity=-0.059 Sum_probs=26.2
Q ss_pred EEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 123 RFRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 123 ~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
.+.+.|= +++|-|++|+++..+-..+++||.+
T Consensus 210 ~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~ 242 (269)
T 1gci_A 210 SLNGTSMATPHVAGAAALVKQKNPSWSNVQIRN 242 (269)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred EcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445554 4999999999999999999999865
No 22
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A
Probab=23.16 E-value=38 Score=27.85 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=25.9
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLDGAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~ 154 (198)
..+.+.|= +++|-|++|+|+..+-. +++||.+
T Consensus 219 ~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~ 251 (279)
T 3f7m_A 219 NTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCG 251 (279)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHH
T ss_pred EEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34455554 49999999999999988 9999876
No 23
>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A
Probab=22.95 E-value=61 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=25.2
Q ss_pred eEEEEEeCCh-hhHHHHHHHHHHHh----cCCChHHHhc
Q 039855 121 RMRFRADSDS-EISKGFCSCLIMVL----DGAEPEEVLG 154 (198)
Q Consensus 121 ~v~F~aDSDA-~IvKGLlALLl~~l----nG~tpeEIl~ 154 (198)
...+.+.|=| ++|-|.+|+|+..+ ...+|+||.+
T Consensus 204 ~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~ 242 (282)
T 3zxy_A 204 TERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQ 242 (282)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred eeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHH
Confidence 3445566654 99999999999987 4467888764
No 24
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1
Probab=21.79 E-value=50 Score=29.54 Aligned_cols=33 Identities=6% Similarity=0.073 Sum_probs=27.0
Q ss_pred EEEEeCC-hhhHHHHHHHHHHHhcCCChHHHhcC
Q 039855 123 RFRADSD-SEISKGFCSCLIMVLDGAEPEEVLGF 155 (198)
Q Consensus 123 ~F~aDSD-A~IvKGLlALLl~~lnG~tpeEIl~~ 155 (198)
.+.+.|= +++|-|++||+++.+-+.+++||.++
T Consensus 256 ~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~ 289 (471)
T 1p8j_A 256 SHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 289 (471)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred cCCCcccccchhhhHHHHHHhhCCCCCHHHHHHH
Confidence 3445554 49999999999999999999998753
No 25
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=21.54 E-value=52 Score=29.10 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=27.0
Q ss_pred EEEEEeCC-hhhHHHHHHHHHHHhc-CCChHHHhc
Q 039855 122 MRFRADSD-SEISKGFCSCLIMVLD-GAEPEEVLG 154 (198)
Q Consensus 122 v~F~aDSD-A~IvKGLlALLl~~ln-G~tpeEIl~ 154 (198)
..+.+.|= +++|-|++|+|++.+. ..+|++|.+
T Consensus 401 ~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~ 435 (471)
T 3t41_A 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIE 435 (471)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred EeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 45555665 4999999999999998 799999875
No 26
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.86 E-value=71 Score=22.51 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.0
Q ss_pred ccccCCcccceeeEEEEccCCeEEEEE
Q 039855 100 AKKVAGCATQVWLEVVMDERGRMRFRA 126 (198)
Q Consensus 100 ~n~V~GCqS~VWL~~~~~~dg~v~F~a 126 (198)
.+-|.|| .|..+.- .|||++|+-
T Consensus 14 ~~pipgt---~W~~v~T-~dGR~fyyN 36 (73)
T 2dk7_A 14 TAPIPGT---PWCVVWT-GDERVFFYN 36 (73)
T ss_dssp EEECSSS---SCEEEEE-SSSCEEEEE
T ss_pred CCCCCCC---CcEEEEC-CCCCEEEec
Confidence 4679998 6998874 699988764
No 27
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=20.84 E-value=38 Score=25.48 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.4
Q ss_pred eEEEEEeCChhhHHHHHHHHHHHhcCC
Q 039855 121 RMRFRADSDSEISKGFCSCLIMVLDGA 147 (198)
Q Consensus 121 ~v~F~aDSDA~IvKGLlALLl~~lnG~ 147 (198)
++.|.||| ||.|..+.+.+.|.+.
T Consensus 22 rVl~iGDS---it~G~~~~l~~~l~~~ 45 (200)
T 4h08_A 22 HVLLIGNS---ITRGYYGKVEAALKEK 45 (200)
T ss_dssp EEEEEESH---HHHHHHHHHHHHTTTT
T ss_pred eEEEEchh---HHhhhHHHHHHHhccC
Confidence 68899998 8899999888888654
No 28
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=20.56 E-value=80 Score=25.75 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=19.9
Q ss_pred ccccCCcccceeeEEEE---ccCCeEEEEEe
Q 039855 100 AKKVAGCATQVWLEVVM---DERGRMRFRAD 127 (198)
Q Consensus 100 ~n~V~GCqS~VWL~~~~---~~dg~v~F~aD 127 (198)
-.+..||..++|+.-+. +++|.++|..|
T Consensus 117 Gf~ppdC~r~~~Lv~E~F~ge~~G~WqY~l~ 147 (175)
T 2gjv_A 117 GIELPDCDRPLWLESEKYIGDAANFCRYALD 147 (175)
T ss_dssp TCCCTTCSSCCEEEEEEEEECGGGCEEEEEE
T ss_pred CccCCCCCCcceehhhhhccccCCeEEEEEE
Confidence 46788999999997654 23577776644
No 29
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Probab=20.08 E-value=69 Score=26.92 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=24.3
Q ss_pred EEEeCC-hhhHHHHHHHHHHHh----cCCChHHHhc
Q 039855 124 FRADSD-SEISKGFCSCLIMVL----DGAEPEEVLG 154 (198)
Q Consensus 124 F~aDSD-A~IvKGLlALLl~~l----nG~tpeEIl~ 154 (198)
+.+.|= +++|-|++||++..+ -..+++||.+
T Consensus 272 ~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~ 307 (340)
T 3lpc_A 272 MAGTSMATPHVSGVAALVISAANSVNKNLTPAELKD 307 (340)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred cccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHH
Confidence 334444 499999999999994 5889998866
Done!