Query 039857
Match_columns 285
No_of_seqs 176 out of 232
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 72.7 3.6 0.00012 35.6 4.4 53 151-206 332-384 (394)
2 3oy2_A Glycosyltransferase B73 71.5 3.6 0.00012 36.3 4.2 57 151-211 344-400 (413)
3 2iw1_A Lipopolysaccharide core 69.0 5.8 0.0002 34.0 4.9 47 151-198 325-371 (374)
4 2jjm_A Glycosyl transferase, g 68.8 6.4 0.00022 34.6 5.2 46 151-196 338-383 (394)
5 2x6q_A Trehalose-synthase TRET 60.2 9.2 0.00031 33.8 4.5 45 151-195 367-411 (416)
6 2gek_A Phosphatidylinositol ma 60.2 9.3 0.00032 33.2 4.5 53 151-207 337-389 (406)
7 3c48_A Predicted glycosyltrans 59.6 14 0.00048 32.7 5.6 49 151-203 379-427 (438)
8 2r60_A Glycosyl transferase, g 52.4 19 0.00065 32.9 5.4 52 151-205 412-463 (499)
9 3qhp_A Type 1 capsular polysac 49.3 16 0.00055 27.8 3.8 36 151-187 128-163 (166)
10 3e1k_B Lactose regulatory prot 38.5 6.9 0.00024 23.6 0.1 13 180-192 6-18 (22)
11 2dt7_B Splicing factor 3 subun 37.2 20 0.00067 27.5 2.5 36 165-200 37-85 (85)
12 4dgw_B PRE-mRNA-splicing facto 36.5 16 0.00055 31.0 2.1 38 167-205 15-64 (152)
13 2bfw_A GLGA glycogen synthase; 35.4 41 0.0014 26.2 4.3 30 151-180 168-198 (200)
14 3fro_A GLGA glycogen synthase; 33.2 23 0.00077 30.9 2.6 49 151-203 383-432 (439)
15 4esw_A Pyrimidine biosynthesis 30.6 26 0.00091 30.8 2.6 22 152-173 226-247 (342)
16 3s28_A Sucrose synthase 1; gly 28.3 59 0.002 33.7 5.0 50 151-200 718-771 (816)
17 3hn0_A Nitrate transport prote 27.3 38 0.0013 29.4 3.0 19 154-172 204-222 (283)
18 1u34_A CRFR2B, corticotropin r 26.5 41 0.0014 27.4 2.8 16 42-57 65-80 (119)
19 2i6e_A Hypothetical protein; N 24.1 1.3E+02 0.0045 26.6 6.0 20 151-170 221-240 (301)
20 3bts_E Regulatory protein GAL4 23.6 16 0.00054 22.8 -0.1 13 180-192 4-16 (26)
21 2l27_A Seven transmembrane hel 22.5 80 0.0027 23.8 3.6 17 42-58 39-55 (84)
22 2nxo_A Hypothetical protein SC 20.3 62 0.0021 27.9 2.9 21 151-171 209-229 (291)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=72.70 E-value=3.6 Score=35.56 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=41.9
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcccCC
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLLRYQP 206 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLlkykP 206 (285)
.+|.++|...-++++..++++++|.+++.++++.+.+.. .+++-|.++++-+.
T Consensus 332 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 332 DKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGE---RLTNILQSEPRKLA 384 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHH---HHHHHHHSCCC---
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHhccCcc
Confidence 789999999999999999999999999999888777665 55555666665443
No 2
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=71.47 E-value=3.6 Score=36.31 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=41.7
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcccCCCcCCC
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLLRYQPTIPPK 211 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLlkykP~vp~~ 211 (285)
.+|.++| ..-++++..++++++|++++.++.+.+.+.. .+++-|.+++.-+..-.+|
T Consensus 344 ~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~---~~~~~~~~~~~~~~~~~~g 400 (413)
T 3oy2_A 344 DDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISS---DIIDFFNSLLRVESRETPG 400 (413)
T ss_dssp HHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHH---HHHHHHHHHTC--------
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHhhcCCCCCC
Confidence 6899999 8888999999999999999988888877766 5566666777766554444
No 3
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=69.03 E-value=5.8 Score=34.03 Aligned_cols=47 Identities=4% Similarity=0.055 Sum_probs=40.3
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHY 198 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EY 198 (285)
.+|.++|...-++++..++++++|++++.++ +.+.+..-+..+|++|
T Consensus 325 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 325 EQLNEVLRKALTQSPLRMAWAENARHYADTQ-DLYSLPEKAADIITGG 371 (374)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999765 7778877777777654
No 4
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=68.75 E-value=6.4 Score=34.57 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=39.2
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLN 196 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~ 196 (285)
++|.++|...-++++..++++++|++++.++.+.+.+..-+..+++
T Consensus 338 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 383 (394)
T 2jjm_A 338 TGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYY 383 (394)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999988887765554444
No 5
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=60.22 E-value=9.2 Score=33.82 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=37.9
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLL 195 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL 195 (285)
.+|.++|.-.-++++..++++++|.+++.++.+.+.+..-+..|+
T Consensus 367 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 411 (416)
T 2x6q_A 367 NEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDIL 411 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 689999999999999999999999999998988777766444443
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=60.15 E-value=9.3 Score=33.16 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=42.5
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcccCCC
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLLRYQPT 207 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLlkykP~ 207 (285)
.+|.++|...-++++..++++++|++++. +.+.+.+.. .++.-|.+++.-++.
T Consensus 337 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~s~~~~~~---~~~~~~~~~~~~~~~ 389 (406)
T 2gek_A 337 DGMAAALIGILEDDQLRAGYVARASERVH-RYDWSVVSA---QIMRVYETVSGAGIK 389 (406)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GGBHHHHHH---HHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hCCHHHHHH---HHHHHHHHHHhhccc
Confidence 78999999999999999999999999997 777666655 555556667766554
No 7
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=59.56 E-value=14 Score=32.71 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=38.5
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcc
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLLR 203 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLlk 203 (285)
.+|.++|.-.-++++..++++++|.+++.+ .+.+.+.. .++.-|.+++.
T Consensus 379 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~---~~~~~~~~~~~ 427 (438)
T 3c48_A 379 HAWADALATLLDDDETRIRMGEDAVEHART-FSWAATAA---QLSSLYNDAIA 427 (438)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHH---HHHHHHHHHhh
Confidence 689999999999999999999999999977 76666655 44445555543
No 8
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=52.42 E-value=19 Score=32.89 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=41.5
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcccC
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLLRYQ 205 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLlkyk 205 (285)
.+|.++|...-++++..++++++|++++.++.+.+.+..-+ ++-|.+++.-+
T Consensus 412 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~---~~~y~~~~~~~ 463 (499)
T 2r60_A 412 EDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGY---LEVIQEIADRK 463 (499)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHH---HHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH---HHHHHHHHhhh
Confidence 67999999999999999999999999999988888776644 44455555443
No 9
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=49.29 E-value=16 Score=27.84 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=29.1
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcch
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNV 187 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~V 187 (285)
.+|.++|...-++++..++++++|++++ ++.+.+.+
T Consensus 128 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~s~~~~ 163 (166)
T 3qhp_A 128 KDLSAKIDWWLENKLERERMQNEYAKSA-LNYTLENS 163 (166)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHC----
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHCChhhh
Confidence 6799999999999999999999999998 66766554
No 10
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=38.53 E-value=6.9 Score=23.55 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=10.7
Q ss_pred HhcCCcchHHHHH
Q 039857 180 EELKLDNVYDYMF 192 (285)
Q Consensus 180 e~L~md~VycYm~ 192 (285)
+--.||+||.|.|
T Consensus 6 ntttmddvynylf 18 (22)
T 3e1k_B 6 NTTTMDDVYNYIF 18 (26)
T ss_pred ccccHHHHHHHhc
Confidence 4567999999987
No 11
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=37.15 E-value=20 Score=27.54 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHH------------HhcCCc-chHHHHHHHHHHHHh
Q 039857 165 ETAQGLGKAASKFVQ------------EELKLD-NVYDYMFHLLNHYSK 200 (285)
Q Consensus 165 ~eAq~Ia~~G~~Fi~------------e~L~md-~VycYm~hLL~EYAK 200 (285)
.-|+=||++|.+|.. +.|+.. ..+.|+.+|+.+|+|
T Consensus 37 ~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~Y~~ 85 (85)
T 2dt7_B 37 LTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 85 (85)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHHHhC
Confidence 347888888887752 345665 467999999999975
No 12
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=36.55 E-value=16 Score=31.01 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHH-----------HhcCCcc-hHHHHHHHHHHHHhhcccC
Q 039857 167 AQGLGKAASKFVQ-----------EELKLDN-VYDYMFHLLNHYSKLLRYQ 205 (285)
Q Consensus 167 Aq~Ia~~G~~Fi~-----------e~L~md~-VycYm~hLL~EYAKLlkyk 205 (285)
|+=+|++|. |+. +.|++.+ .+.|..+|+.+|+++|+..
T Consensus 15 A~FvArnG~-F~~~L~~re~npqF~FL~p~h~l~~~F~~lv~qY~~vl~~~ 64 (152)
T 4dgw_B 15 ARYYAKDKS-IVEQMISKDGEARLNFMNSSHPLHKTFTDFVAQYKRVYSFT 64 (152)
T ss_dssp HHHHTTTSS-HHHHHHHHTCCTTSGGGSTTSTTHHHHHHHHHHHHHHTTST
T ss_pred HHHheecCH-HHHHHHHhccCcccccCCCCCccHHHHHHHHHHHHHHHCcc
Confidence 666777777 764 3455655 7899999999999999543
No 13
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=35.45 E-value=41 Score=26.24 Aligned_cols=30 Identities=7% Similarity=-0.059 Sum_probs=27.8
Q ss_pred ccHHHHHHHhhh-cHHHHHHHHHHHHHHHHH
Q 039857 151 RSIKFAVDWGNN-HTETAQGLGKAASKFVQE 180 (285)
Q Consensus 151 ~dIk~aV~Wgn~-hd~eAq~Ia~~G~~Fi~e 180 (285)
.+|.++|...-+ ++++.++++++|++++.+
T Consensus 168 ~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 168 GELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 689999999999 999999999999999876
No 14
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=33.17 E-value=23 Score=30.88 Aligned_cols=49 Identities=6% Similarity=0.062 Sum_probs=38.9
Q ss_pred ccHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcc
Q 039857 151 RSIKFAVDWGNN-HTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLLR 203 (285)
Q Consensus 151 ~dIk~aV~Wgn~-hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLlk 203 (285)
.+|.++|...-+ +++..++++++|.+++ ++.+.+.+.. .+++-|.+++.
T Consensus 383 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~---~~~~~~~~~~~ 432 (439)
T 3fro_A 383 GELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAE---RYVKAYTGSID 432 (439)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHH---HHHHHHHTCSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHH---HHHHHHHHHHH
Confidence 689999998877 8999999999999999 6777666554 55566666654
No 15
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=30.64 E-value=26 Score=30.75 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=18.2
Q ss_pred cHHHHHHHhhhcHHHHHHHHHH
Q 039857 152 SIKFAVDWGNNHTETAQGLGKA 173 (285)
Q Consensus 152 dIk~aV~Wgn~hd~eAq~Ia~~ 173 (285)
-+..+++|+++||++|-+|-..
T Consensus 226 A~~ka~~~~~~nP~eA~~i~~~ 247 (342)
T 4esw_A 226 AIKRATDYMLAHPREAWAEYGN 247 (342)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHH
Confidence 3678999999999998887644
No 16
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=28.25 E-value=59 Score=33.71 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=41.1
Q ss_pred ccHHHHHHHhh----hcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Q 039857 151 RSIKFAVDWGN----NHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSK 200 (285)
Q Consensus 151 ~dIk~aV~Wgn----~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAK 200 (285)
.+|.++|..+- ++++..++++++|.+++.++.+.+.+..=+..|.+.|..
T Consensus 718 e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~ 771 (816)
T 3s28_A 718 DQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGF 771 (816)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhH
Confidence 56778885554 899999999999999999999998888877777666653
No 17
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=27.27 E-value=38 Score=29.36 Aligned_cols=19 Identities=0% Similarity=-0.198 Sum_probs=16.0
Q ss_pred HHHHHHhhhcHHHHHHHHH
Q 039857 154 KFAVDWGNNHTETAQGLGK 172 (285)
Q Consensus 154 k~aV~Wgn~hd~eAq~Ia~ 172 (285)
..+++|+++|+++|.+|..
T Consensus 204 ~~a~~~~~~np~ea~~~~~ 222 (283)
T 3hn0_A 204 RASCQKAVRYPKETIHSLE 222 (283)
T ss_dssp HHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHH
Confidence 6788999999999888764
No 18
>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and loops, signaling protein; NMR {Mus musculus} SCOP: g.76.1.1 PDB: 2jnd_A* 2jnc_A
Probab=26.49 E-value=41 Score=27.38 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=12.9
Q ss_pred CCCCCCCCcchhhhcc
Q 039857 42 PAPSTCPDYFRWIHKD 57 (285)
Q Consensus 42 ~~~~~CP~yf~wi~~d 57 (285)
.....||+||.||+-|
T Consensus 65 ~v~~pCP~~~~~~~~~ 80 (119)
T 1u34_A 65 LVERPCPEYFNGIKYN 80 (119)
T ss_dssp BCCCCSSCTTSSSCCC
T ss_pred EEEecCccccCCcccC
Confidence 4567899999998766
No 19
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=24.10 E-value=1.3e+02 Score=26.59 Aligned_cols=20 Identities=15% Similarity=0.141 Sum_probs=15.9
Q ss_pred ccHHHHHHHhhhcHHHHHHH
Q 039857 151 RSIKFAVDWGNNHTETAQGL 170 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~I 170 (285)
+.+..+++|+++|++++-++
T Consensus 221 ~~l~~a~~~~~~~~~e~~~~ 240 (301)
T 2i6e_A 221 QAMREARRRGIGHLAEVSQR 240 (301)
T ss_dssp HHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHH
Confidence 45788999999999885444
No 20
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=23.61 E-value=16 Score=22.78 Aligned_cols=13 Identities=38% Similarity=1.032 Sum_probs=10.3
Q ss_pred HhcCCcchHHHHH
Q 039857 180 EELKLDNVYDYMF 192 (285)
Q Consensus 180 e~L~md~VycYm~ 192 (285)
+--.||+||.|.|
T Consensus 4 NTTTMDDvyNylF 16 (26)
T 3bts_E 4 NTTTMDDVYNYLF 16 (26)
T ss_pred ccccHHHHHHHhc
Confidence 3457999999987
No 21
>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=22.49 E-value=80 Score=23.82 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=13.2
Q ss_pred CCCCCCCCcchhhhccc
Q 039857 42 PAPSTCPDYFRWIHKDL 58 (285)
Q Consensus 42 ~~~~~CP~yf~wi~~dl 58 (285)
.....||+||.++..|.
T Consensus 39 ~v~~~CP~~~~~~~~~~ 55 (84)
T 2l27_A 39 LVVRPCPAFFYGVRYNT 55 (84)
T ss_dssp CCBCCCCSSBTTBCCCC
T ss_pred EEEecCchhhcCcccCc
Confidence 44678999999987653
No 22
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=20.28 E-value=62 Score=27.86 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=17.1
Q ss_pred ccHHHHHHHhhhcHHHHHHHH
Q 039857 151 RSIKFAVDWGNNHTETAQGLG 171 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia 171 (285)
+.+.++++|+++|+++|-+|.
T Consensus 209 ~a~~~a~~~~~~~p~ea~~~~ 229 (291)
T 2nxo_A 209 EAFLASRNLSLEEVEKVAEQA 229 (291)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHH
Confidence 447789999999999987654
Done!