Query 039857
Match_columns 285
No_of_seqs 176 out of 232
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 03:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039857.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039857hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nxoa1 c.94.1.1 (A:5-281) Hyp 57.3 6.2 0.00045 31.7 4.9 21 152-172 204-224 (277)
2 d2dt7b1 a.217.1.1 (B:134-217) 40.6 9.6 0.0007 27.2 3.1 34 167-200 38-84 (84)
3 d2iw1a1 c.87.1.8 (A:2-371) Lip 37.0 33 0.0024 26.4 6.1 36 151-187 324-359 (370)
4 d1u34a_ g.76.1.1 (A:) Corticot 33.9 18 0.0013 27.7 3.9 33 23-57 45-80 (119)
5 d2bisa1 c.87.1.8 (A:1-437) Gly 33.8 10 0.00074 31.0 2.6 48 151-202 381-429 (437)
6 d2i6ea1 c.94.1.1 (A:16-287) Hy 29.5 29 0.0021 28.5 4.8 43 150-205 205-247 (272)
7 d2r5fa1 c.124.1.8 (A:59-316) T 29.3 11 0.00079 31.2 2.0 105 165-275 33-146 (258)
8 d2dt6a1 a.217.1.1 (A:48-110) S 28.8 27 0.002 23.4 3.7 37 165-201 8-57 (63)
9 d1vz0a1 a.4.14.1 (A:116-208) P 25.0 11 0.00082 27.2 1.1 43 152-195 11-53 (93)
10 d1uqta_ c.87.1.6 (A:) Trehalos 19.3 89 0.0065 27.1 6.3 46 151-200 406-452 (456)
No 1
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=57.32 E-value=6.2 Score=31.67 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=17.7
Q ss_pred cHHHHHHHhhhcHHHHHHHHH
Q 039857 152 SIKFAVDWGNNHTETAQGLGK 172 (285)
Q Consensus 152 dIk~aV~Wgn~hd~eAq~Ia~ 172 (285)
-+.+|++|+++|+++|.+|..
T Consensus 204 a~~~a~~~~~~~p~ea~~~~a 224 (277)
T d2nxoa1 204 AFLASRNLSLEEVEKVAEQAA 224 (277)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHH
Confidence 367899999999999988754
No 2
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.63 E-value=9.6 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHH------------HhcCCcch-HHHHHHHHHHHHh
Q 039857 167 AQGLGKAASKFVQ------------EELKLDNV-YDYMFHLLNHYSK 200 (285)
Q Consensus 167 Aq~Ia~~G~~Fi~------------e~L~md~V-ycYm~hLL~EYAK 200 (285)
|+=||++|..|-. ..|++++- +-|+.+||.+|+|
T Consensus 38 A~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 38 AQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 6666666666532 23555544 7888899999975
No 3
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=36.96 E-value=33 Score=26.41 Aligned_cols=36 Identities=6% Similarity=0.081 Sum_probs=29.6
Q ss_pred ccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcch
Q 039857 151 RSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNV 187 (285)
Q Consensus 151 ~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~V 187 (285)
.+|.++|.-.-++++..++++++|++++.+ .....+
T Consensus 324 ~~la~~i~~ll~d~~~~~~~~~~ar~~~~~-~~~~~~ 359 (370)
T d2iw1a1 324 EQLNEVLRKALTQSPLRMAWAENARHYADT-QDLYSL 359 (370)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-SCCSCH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-hChhHH
Confidence 689999998889999999999999999954 343333
No 4
>d1u34a_ g.76.1.1 (A:) Corticotropin releasing factor receptor 2, CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.87 E-value=18 Score=27.65 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCCcchhhhcc
Q 039857 23 TNPGTYP---TSYTTKDEDHNGPAPSTCPDYFRWIHKD 57 (285)
Q Consensus 23 tcp~~~~---~~~~~~~~~~~~~~~~~CP~yf~wi~~d 57 (285)
-||++.- +=.|...+.. .....||+||.+|..|
T Consensus 45 ~C~~twD~i~~CWP~T~aG~--~v~~pCP~~~~g~~~~ 80 (119)
T d1u34a_ 45 YCNTTLDQIGTCWPQSAPGA--LVERPCPEYFNGIKYN 80 (119)
T ss_dssp CCCCBCCSSSCCBCCCCTTC--BCCCCSSCTTSSSCCC
T ss_pred CCCCcCCCCcccCCCCCCCC--EEEecCChhhcccccc
Confidence 3877621 2244232322 4466799999999866
No 5
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=33.84 E-value=10 Score=30.97 Aligned_cols=48 Identities=6% Similarity=0.039 Sum_probs=37.8
Q ss_pred ccHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhc
Q 039857 151 RSIKFAVDWGN-NHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLL 202 (285)
Q Consensus 151 ~dIk~aV~Wgn-~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLl 202 (285)
.+|.++|...- .+++..++++++|.+++ ++++.+.+.. .+++=|.+++
T Consensus 381 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~a~---~~~~iY~~~i 429 (437)
T d2bisa1 381 GELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAE---RYVKAYTGSI 429 (437)
T ss_dssp HHHHHHHHHHHTTTTSCTHHHHHHHHHHH-HHSCHHHHHH---HHHHHHHTCS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHH---HHHHHHHHHH
Confidence 57888897765 47788999999999998 4688888765 6666687776
No 6
>d2i6ea1 c.94.1.1 (A:16-287) Hypothetical protein DR0370 {Deinococcus radiodurans [TaxId: 1299]}
Probab=29.46 E-value=29 Score=28.49 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=27.9
Q ss_pred cccHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcccC
Q 039857 150 CRSIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSKLLRYQ 205 (285)
Q Consensus 150 c~dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAKLlkyk 205 (285)
.+.++++++||.+|++++- +.+ .+.+.++. .++.+|=+.++|.
T Consensus 205 ~~~l~~S~~~a~~~~~e~~---~~~----~~~~~l~~------~~i~~Y~~~i~y~ 247 (272)
T d2i6ea1 205 LQAMREARRRGIGHLAEVS---QRH----AEKLGLPE------RVVQHYLWNFRYH 247 (272)
T ss_dssp HHHHHHHHHHHHHTHHHHH---HHH----HHTTTCCH------HHHHHHHHTCBCS
T ss_pred HHHHHHHHHHHHhCHHHHH---HHH----HHHcCCCH------HHHHHHHHhCeeC
Confidence 4678999999999998863 222 23444442 4566666667774
No 7
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]}
Probab=29.26 E-value=11 Score=31.23 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHhhcccCCCcCCC--cccccccccc---CCcchHHHhHHhhhhc
Q 039857 165 ETAQGLGKAASKFVQEELKLDNVYDY--MFHLLNHYSKLLRYQPTIPPK--ADEYCAETLG---CPEEGLARKFMEESFV 237 (285)
Q Consensus 165 ~eAq~Ia~~G~~Fi~e~L~md~VycY--m~hLL~EYAKLlkykP~vp~~--a~Evc~esm~---C~~~g~~r~fm~eS~v 237 (285)
...+.+|+.|-+|+.+.|+..++.-- |-+-|..+++.|..+|....+ .+.+...... -..+...+.|-+
T Consensus 33 ~~~~~v~~~aA~~L~~~l~~~~~igv~~wG~Tl~~~~~~l~~~~~~~~~~~vV~l~G~~~~~~~~~~~~i~~~lA~---- 108 (258)
T d2r5fa1 33 SIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLAT---- 108 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhcccCCEEEEEccChHHHHHHHHhccccccCCCceEEecCCCCCCCCCcCHHHHHHHHHH----
Confidence 34578999999999999999888875 789999999998777654333 3333221110 001122222222
Q ss_pred cCCCCCCCCCCCCC--CChhHHHHHHHhhhhHHHHHHHHH
Q 039857 238 KSPKETSPCTLPPP--YDPISLHDVLWGEKKSVLQVESWT 275 (285)
Q Consensus 238 ~~p~~~~PC~~ppp--~~~~~l~~~~~rk~~~~~qVe~we 275 (285)
--...+-.||.| .+..++++.+.+...+.+-.+.|+
T Consensus 109 --~~~~~~~~l~aP~~~~s~~~~~~l~~~~~i~~vl~~~~ 146 (258)
T d2r5fa1 109 --LLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHRFD 146 (258)
T ss_dssp --HHTSCEECCCCC----------CCHHHHHHHHHHHHTT
T ss_pred --HcCCceEeccCccccCCHHHHHHHHhChhHHHHHHHHh
Confidence 112334457878 377888888888888887777775
No 8
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.75 E-value=27 Score=23.39 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHH------------HhcCCcc-hHHHHHHHHHHHHhh
Q 039857 165 ETAQGLGKAASKFVQ------------EELKLDN-VYDYMFHLLNHYSKL 201 (285)
Q Consensus 165 ~eAq~Ia~~G~~Fi~------------e~L~md~-VycYm~hLL~EYAKL 201 (285)
.-|+=||++|..|.. ..|.+++ -+.|+..+|.+|.+-
T Consensus 8 ~tA~fVak~G~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g 57 (63)
T d2dt6a1 8 KTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEG 57 (63)
T ss_dssp HHHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHHHHHhccCCCcCcCCCCCCCCcHHHHHHHHHHHcC
Confidence 467888888887742 3466665 459999999999764
No 9
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=24.98 E-value=11 Score=27.15 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=31.0
Q ss_pred cHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 039857 152 SIKFAVDWGNNHTETAQGLGKAASKFVQEELKLDNVYDYMFHLL 195 (285)
Q Consensus 152 dIk~aV~Wgn~hd~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL 195 (285)
.++..+++|.+|++.|+.||+ ...+|.+.|+.-..-.-....|
T Consensus 11 a~~~L~e~g~t~~~iA~~~Gk-s~~~V~~~LrLl~L~~~v~~~l 53 (93)
T d1vz0a1 11 GYQALLEMGLTQEEVARRVGK-ARSTVANALRLLQLPPEALEAL 53 (93)
T ss_dssp HHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 356668999999999999998 5778877776555444444443
No 10
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}
Probab=19.33 E-value=89 Score=27.11 Aligned_cols=46 Identities=4% Similarity=0.062 Sum_probs=36.7
Q ss_pred ccHHHHHHHhhhc-HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Q 039857 151 RSIKFAVDWGNNH-TETAQGLGKAASKFVQEELKLDNVYDYMFHLLNHYSK 200 (285)
Q Consensus 151 ~dIk~aV~Wgn~h-d~eAq~Ia~~G~~Fi~e~L~md~VycYm~hLL~EYAK 200 (285)
.++-+||..+-+. +++.++.+++++++|.++ +|.....+.|....+
T Consensus 406 ~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~~----~~~~W~~~fl~~l~~ 452 (456)
T d1uqta_ 406 DEVAAALDRALTMSLAERISRHAEMLDVIVKN----DINHWQECFISDLKQ 452 (456)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHh
Confidence 6799999999885 578899999999999875 566655677776654
Done!