BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039858
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 158 TLGVDPNFTNHLSIWWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSNKQEKYFTYSV 217
L DPN H+ W + S + LW+ F SG +F Y +++E SV
Sbjct: 2 ALRRDPNLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHC-----LFYYKDSREE-----SV 51
Query: 218 KGNVTLFPRLRIMADGILATHNGKERLIEGYPVCRNASSDFKTITALSG 266
G+V L P I DG A + +P R T+ L G
Sbjct: 52 LGSV-LLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRG 99
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 37 ETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDS 96
+ DK +W N T D L++ S DGNL + +PI S+ G N + +LQ
Sbjct: 35 DVDKPIWATN--TGGLDRRCHLSMQS-DGNLVVYSPRNNPIWASNTGGENGNYVCVLQKD 91
Query: 97 GNLVL 101
N+V+
Sbjct: 92 RNVVI 96
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 48 NTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVL 101
NT I SG + +DGN + + G + S N I ILQD GN+++
Sbjct: 44 NTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWASHSTRGSGNYILILQDDGNVII 97
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 69 ILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVLQEANHDGSTRRVLWQS 117
+L++ G P+ S+ G G+ L ++GNLV+ + + RV+WQ+
Sbjct: 33 VLYDSGKPVWASNTGGLGSGCRLTLHNNGNLVIYD-----QSNRVIWQT 76
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 95 DSGNLVLQEANHDGSTRRV-LWQSFDYPTDTFLPGMK 130
DSG ++ AN DG+ R+V LWQS + P L M+
Sbjct: 177 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 213
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 37 ETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDS 96
+ DK +W N T S L++ + DGNL + + PI S+ G N + ILQ
Sbjct: 35 DVDKPIWATN--TGGLSRSCFLSMQT-DGNLVVYNPSNKPIWASNTGGQNGNYVCILQKD 91
Query: 97 GNLVL 101
N+V+
Sbjct: 92 RNVVI 96
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 95 DSGNLVLQEANHDGSTRRV-LWQSFDYPTDTFLPGMK 130
DSG ++ AN DG+ R+V LWQS + P L M+
Sbjct: 134 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 170
>pdb|2GZ6|A Chain A, Crystal Structure Of Anabaena Sp. Ch1
N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
pdb|2GZ6|B Chain B, Crystal Structure Of Anabaena Sp. Ch1
N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
Length = 388
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 37 ETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDS 96
+TDK +W+ NR F + ++ + LKI NG +A GN A+ +
Sbjct: 47 DTDKFIWLQNRQVWTFSMLCN-QLEKRENWLKIARNGAKFLAQHGRDDEGNWYFALTRGG 105
Query: 97 GNLV 100
LV
Sbjct: 106 EPLV 109
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 172 WWRGEFHSNIGLWRNGIFDSSGDSTISDFIFSYTSN 207
WWRG ++ +G + + GDS + D + S S+
Sbjct: 52 WWRGSYNGQVGWFPSNYVTEEGDSPLGDHVGSGPSS 87
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 42 VWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVL 101
VW +N T I G + +DGN + G + S N + +LQ+ GN+V+
Sbjct: 40 VWASN--TGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVI 97
Query: 102 QEAN 105
++
Sbjct: 98 YRSD 101
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 42 VWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIPGAGNNTIAILQDSGNLVL 101
VW +N T I G + +DGN + G + S N + +LQ+ GN+V+
Sbjct: 40 VWASN--TGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVI 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,771,118
Number of Sequences: 62578
Number of extensions: 531631
Number of successful extensions: 1096
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 26
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)