Query 039858
Match_columns 351
No_of_seqs 161 out of 1327
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 8.9E-30 1.9E-34 210.6 3.4 108 39-153 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 9.7E-24 2.1E-28 174.9 13.6 106 1-121 10-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.7E-22 3.6E-27 166.9 13.0 104 1-120 10-114 (114)
4 PF08276 PAN_2: PAN-like domai 99.6 2.4E-16 5.2E-21 117.7 5.9 65 251-322 1-66 (66)
5 cd01098 PAN_AP_plant Plant PAN 99.4 4E-13 8.7E-18 104.0 7.2 80 249-339 3-84 (84)
6 cd00129 PAN_APPLE PAN/APPLE-li 99.4 1.2E-12 2.5E-17 101.4 6.2 69 255-338 8-80 (80)
7 PF00954 S_locus_glycop: S-loc 99.3 6E-12 1.3E-16 103.2 6.9 57 179-236 1-58 (110)
8 smart00473 PAN_AP divergent su 98.6 2.1E-07 4.6E-12 70.2 7.8 71 256-337 4-77 (78)
9 smart00108 B_lectin Bulb-type 98.4 1.4E-06 3.1E-11 71.6 8.8 86 57-181 23-111 (114)
10 cd00028 B_lectin Bulb-type man 98.3 6.5E-06 1.4E-10 68.0 9.6 81 64-182 30-113 (116)
11 PF01453 B_lectin: D-mannose b 98.0 7.9E-05 1.7E-09 61.5 11.0 94 5-122 18-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.6 8.6E-05 1.9E-09 56.1 4.3 49 260-315 8-57 (73)
13 PF00024 PAN_1: PAN domain Thi 93.4 0.077 1.7E-06 39.6 3.0 54 257-317 3-58 (79)
14 smart00223 APPLE APPLE domain. 90.1 0.52 1.1E-05 36.3 4.3 50 262-315 7-57 (79)
15 PF14295 PAN_4: PAN domain; PD 87.1 0.44 9.5E-06 32.5 1.9 22 281-302 16-37 (51)
16 PF08277 PAN_3: PAN-like domai 86.5 2.5 5.4E-05 31.0 5.9 31 281-315 20-50 (71)
17 smart00605 CW CW domain. 84.9 4.2 9.2E-05 31.9 6.8 53 281-340 22-76 (94)
18 cd01099 PAN_AP_HGF Subfamily o 82.4 2.7 5.9E-05 32.0 4.6 33 281-315 25-59 (80)
19 KOG4649 PQQ (pyrrolo-quinoline 76.9 9.6 0.00021 36.2 7.1 46 35-81 165-214 (354)
20 cd05845 Ig2_L1-CAM_like Second 43.1 41 0.00088 26.7 4.1 34 36-71 31-64 (95)
21 PF12690 BsuPI: Intracellular 37.6 1.3E+02 0.0029 23.0 6.1 28 123-160 54-81 (82)
22 PF01436 NHL: NHL repeat; Int 30.3 91 0.002 18.5 3.3 16 58-74 7-22 (28)
23 PRK11138 outer membrane biogen 27.2 2.1E+02 0.0046 28.1 7.2 74 38-117 43-146 (394)
24 TIGR03300 assembly_YfgL outer 26.9 2.7E+02 0.0059 26.9 7.8 72 39-116 40-130 (377)
25 KOG0640 mRNA cleavage stimulat 26.0 6.4E+02 0.014 24.8 10.0 70 43-116 252-333 (430)
26 PF07354 Sp38: Zona-pellucida- 25.8 96 0.0021 29.4 4.1 36 35-72 9-44 (271)
27 PF14269 Arylsulfotran_2: Aryl 24.1 6.4E+02 0.014 24.1 9.7 81 24-116 166-295 (299)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.95 E-value=8.9e-30 Score=210.57 Aligned_cols=108 Identities=44% Similarity=0.743 Sum_probs=79.1
Q ss_pred CcEEEEeCCCCCCcCC--CcEEEEEcCCCcEEEeeCCCCCeeeec-cCCCC--CceEEEEecCCCeEEEecccCCCCcee
Q 039858 39 DKLVWIANRNTPIFDT--SGSLTIDSNDGNLKILHNGGDPIAVSS-IPGAG--NNTIAILQDSGNLVLQEANHDGSTRRV 113 (351)
Q Consensus 39 ~~~vW~Anr~~pv~~~--~~~l~l~~~~G~L~l~~~~g~~~vWst-~~~~~--~~~~a~LldsGNlVl~~~~~~~~~~~~ 113 (351)
++|||+|||+.|+... ..+|+|+. ||+|+|++..+ ..+|++ .+.+. ....|+|+|+|||||++. .+. +
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~-dGnLvl~~~~~-~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~----~~~-~ 74 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQS-DGNLVLYDSNG-SVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS----SGN-V 74 (114)
T ss_dssp --------TTEEEEECETTEEEEEET-TSEEEEEETTT-EEEEE--S-TTSS-SSEEEEEETTSEEEEEET----TSE-E
T ss_pred cccccccccccccccccccccceECC-CCeEEEEcCCC-CEEEEecccCCccccCeEEEEeCCCCEEEEee----cce-E
Confidence 6899999999999542 37899999 99999999998 889999 65443 478999999999999995 456 9
Q ss_pred eeeecCCCCcccCCCceEeeeecCCCceEEEEeccCCCCC
Q 039858 114 LWQSFDYPTDTFLPGMKLGINLEADKKWFLQSWITEESPA 153 (351)
Q Consensus 114 lWqSFd~PtDTlLpgq~l~~~~~tg~~~~L~Sw~s~~d~s 153 (351)
|||||||||||+||+|+|+.+..+|.+..|+||++.+|||
T Consensus 75 lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 75 LWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999999999999877776666799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.91 E-value=9.7e-24 Score=174.86 Aligned_cols=106 Identities=42% Similarity=0.708 Sum_probs=89.9
Q ss_pred CccCCCeeEEEeecCCCCCceEEEEEEecCCCCCCCCCCcEEEEeCCCCCCcCCCcEEEEEcCCCcEEEeeCCCCCeeee
Q 039858 1 MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVS 80 (351)
Q Consensus 1 l~S~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~vW~Anr~~pv~~~~~~l~l~~~~G~L~l~~~~g~~~vWs 80 (351)
|+|+++.|++|||.+......+++|||. ..+ .++||.||++.|. ...++|.|+. +|+|+|.|.+| .++|+
T Consensus 10 l~s~~~~f~~G~~~~~~q~~dgnlv~~~------~~~-~~~vW~snt~~~~-~~~~~l~l~~-dGnLvl~~~~g-~~vW~ 79 (116)
T cd00028 10 LVSSGSLFELGFFKLIMQSRDYNLILYK------GSS-RTVVWVANRDNPS-GSSCTLTLQS-DGNLVIYDGSG-TVVWS 79 (116)
T ss_pred EEeCCCcEEEecccCCCCCCeEEEEEEe------CCC-CeEEEECCCCCCC-CCCEEEEEec-CCCeEEEcCCC-cEEEE
Confidence 5799999999999986532388999998 555 7899999999984 3567899999 99999999988 89999
Q ss_pred ccCCC-CCceEEEEecCCCeEEEecccCCCCceeeeeecCCC
Q 039858 81 SIPGA-GNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYP 121 (351)
Q Consensus 81 t~~~~-~~~~~a~LldsGNlVl~~~~~~~~~~~~lWqSFd~P 121 (351)
+.+.. .....|+|+|+|||||++. .+. +||||||||
T Consensus 80 S~~~~~~~~~~~~L~ddGnlvl~~~----~~~-~~W~Sf~~P 116 (116)
T cd00028 80 SNTTRVNGNYVLVLLDDGNLVLYDS----DGN-FLWQSFDYP 116 (116)
T ss_pred ecccCCCCceEEEEeCCCCEEEECC----CCC-EEEcCCCCC
Confidence 96543 4567899999999999985 356 999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.89 E-value=1.7e-22 Score=166.93 Aligned_cols=104 Identities=42% Similarity=0.718 Sum_probs=89.1
Q ss_pred CccCCCeeEEEeecCCCCCceEEEEEEecCCCCCCCCCCcEEEEeCCCCCCcCCCcEEEEEcCCCcEEEeeCCCCCeeee
Q 039858 1 MVSANQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVS 80 (351)
Q Consensus 1 l~S~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~vW~Anr~~pv~~~~~~l~l~~~~G~L~l~~~~g~~~vWs 80 (351)
|+|+++.|++|||.+.. ...+++|||. ..+ .++||+||++.|+.. .+.|.|++ +|+|+|.+.+| .++|+
T Consensus 10 l~s~~~~f~~G~~~~~~-q~dgnlV~~~------~~~-~~~vW~snt~~~~~~-~~~l~l~~-dGnLvl~~~~g-~~vW~ 78 (114)
T smart00108 10 LVSGNSLFELGFFTLIM-QNDYNLILYK------SSS-RTVVWVANRDNPVSD-SCTLTLQS-DGNLVLYDGDG-RVVWS 78 (114)
T ss_pred EecCCCcEeeeccccCC-CCCEEEEEEE------CCC-CcEEEECCCCCCCCC-CEEEEEeC-CCCEEEEeCCC-CEEEE
Confidence 57999999999999864 4678899998 555 789999999999864 37899999 99999999988 89999
Q ss_pred ccCC-CCCceEEEEecCCCeEEEecccCCCCceeeeeecCC
Q 039858 81 SIPG-AGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDY 120 (351)
Q Consensus 81 t~~~-~~~~~~a~LldsGNlVl~~~~~~~~~~~~lWqSFd~ 120 (351)
+.+. ......|+|+|+|||||++. .++ +|||||||
T Consensus 79 S~t~~~~~~~~~~L~ddGnlvl~~~----~~~-~~W~Sf~~ 114 (114)
T smart00108 79 SNTTGANGNYVLVLLDDGNLVIYDS----DGN-FLWQSFDY 114 (114)
T ss_pred ecccCCCCceEEEEeCCCCEEEECC----CCC-EEeCCCCC
Confidence 9654 45567899999999999985 456 99999997
No 4
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.64 E-value=2.4e-16 Score=117.69 Aligned_cols=65 Identities=28% Similarity=0.633 Sum_probs=53.0
Q ss_pred ccCCCCceEEecccccCCCCCcceeecCCC-CChHHHHHHhccCCceEEEeccCCCCCCceEEecCCCceeee
Q 039858 251 CRNASSDFKTITALSGDISNDGFTFKESDN-MTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDA 322 (351)
Q Consensus 251 C~~~~d~F~~~~~v~~~p~~~~~~~~~~~~-~s~~~C~~~CL~nCSC~Ay~y~~~~~g~gC~lw~~~l~~~n~ 322 (351)
|+. +|+|+++++| ++|+++.... .. .++++|++.||+||||+||+|.+..++++|++|+++| +|+
T Consensus 1 C~~-~d~F~~l~~~-~~p~~~~~~~---~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L--~d~ 66 (66)
T PF08276_consen 1 CGS-GDGFLKLPNM-KLPDFDNAIV---DSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDL--VDL 66 (66)
T ss_pred CcC-CCEEEEECCe-eCCCCcceee---ecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEe--ecC
Confidence 533 6899999999 9999876554 23 8999999999999999999996311456699999999 874
No 5
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.42 E-value=4e-13 Score=103.97 Aligned_cols=80 Identities=23% Similarity=0.471 Sum_probs=60.2
Q ss_pred CCccCC--CCceEEecccccCCCCCcceeecCCCCChHHHHHHhccCCceEEEeccCCCCCCceEEecCCCceeeeeecC
Q 039858 249 PVCRNA--SSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTGCQIWSEGTNFTDAVFAN 326 (351)
Q Consensus 249 ~~C~~~--~d~F~~~~~v~~~p~~~~~~~~~~~~~s~~~C~~~CL~nCSC~Ay~y~~~~~g~gC~lw~~~l~~~n~~~~~ 326 (351)
+.|... .+.|++++++ ++|++.... ...++++|++.||+||+|+||+|. .++.+|++|...+ .+.+...
T Consensus 3 ~~C~~~~~~~~f~~~~~~-~~~~~~~~~----~~~s~~~C~~~Cl~nCsC~a~~~~--~~~~~C~~~~~~~--~~~~~~~ 73 (84)
T cd01098 3 LNCGGDGSTDGFLKLPDV-KLPDNASAI----TAISLEECREACLSNCSCTAYAYN--NGSGGCLLWNGLL--NNLRSLS 73 (84)
T ss_pred cccCCCCCCCEEEEeCCe-eCCCchhhh----ccCCHHHHHHHHhcCCCcceeeec--CCCCeEEEEecee--cceEeec
Confidence 357552 2689999999 999775431 127899999999999999999996 1344599998877 7776331
Q ss_pred CCCCCceEEEEEe
Q 039858 327 PVFTYRLIYIRET 339 (351)
Q Consensus 327 ~~~~~~~~ylrv~ 339 (351)
..+.++||||+
T Consensus 74 --~~~~~~yiKv~ 84 (84)
T cd01098 74 --SGGGTLYLRLA 84 (84)
T ss_pred --CCCcEEEEEeC
Confidence 34689999985
No 6
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.36 E-value=1.2e-12 Score=101.38 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=55.8
Q ss_pred CCceEEecccccCCCCCcceeecCCCCChHHHHHHhcc---CCceEEEeccCCCCCCceEEecCCCceeeee-ecCCCCC
Q 039858 255 SSDFKTITALSGDISNDGFTFKESDNMTINDCQLACQK---NCSCIAFASPNENNKTGCQIWSEGTNFTDAV-FANPVFT 330 (351)
Q Consensus 255 ~d~F~~~~~v~~~p~~~~~~~~~~~~~s~~~C~~~CL~---nCSC~Ay~y~~~~~g~gC~lw~~~l~~~n~~-~~~~~~~ 330 (351)
...|+++.++ ++|++.. .++++|+++|++ ||||+||+|.+ .+.||++|+++|. +|++ +. ..
T Consensus 8 ~g~fl~~~~~-klpd~~~--------~s~~eC~~~Cl~~~~nCsC~Aya~~~--~~~gC~~W~~~l~-~d~~~~~---~~ 72 (80)
T cd00129 8 AGTTLIKIAL-KIKTTKA--------NTADECANRCEKNGLPFSCKAFVFAK--ARKQCLWFPFNSM-SGVRKEF---SH 72 (80)
T ss_pred CCeEEEeecc-cCCcccc--------cCHHHHHHHHhcCCCCCCceeeeccC--CCCCeEEecCcch-hhHHhcc---CC
Confidence 4689999999 9998643 579999999999 99999999962 3457999999773 5566 54 56
Q ss_pred CceEEEEE
Q 039858 331 YRLIYIRE 338 (351)
Q Consensus 331 ~~~~ylrv 338 (351)
+.++|+|.
T Consensus 73 g~~Ly~r~ 80 (80)
T cd00129 73 GFDLYENK 80 (80)
T ss_pred CceeEeEC
Confidence 89999983
No 7
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.29 E-value=6e-12 Score=103.23 Aligned_cols=57 Identities=30% Similarity=0.550 Sum_probs=53.1
Q ss_pred EEecccCCCeeeecCCC-CccccEEEEEecCCeeEEEEEecCCCCeeeEEEEccCccEE
Q 039858 179 SNIGLWRNGIFDSSGDS-TISDFIFSYTSNKQEKYFTYSVKGNVTLFPRLRIMADGILA 236 (351)
Q Consensus 179 W~~g~w~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~Ld~dG~l~ 236 (351)
||+|+|+|..|+++|+| ....+.+.|+.+++|.+|+|.+.+. +.++|++||.+|+++
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~-s~~~r~~ld~~G~l~ 58 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNS-SVLSRLVLDSDGQLQ 58 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCC-ceEEEEEEeeeeEEE
Confidence 89999999999999999 6677888999999999999999887 889999999999998
No 8
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.59 E-value=2.1e-07 Score=70.21 Aligned_cols=71 Identities=24% Similarity=0.469 Sum_probs=52.5
Q ss_pred CceEEecccccCCCCCcceeecCCCCChHHHHHHhcc-CCceEEEeccCCCCCCceEEec-CCCceeeee-ecCCCCCCc
Q 039858 256 SDFKTITALSGDISNDGFTFKESDNMTINDCQLACQK-NCSCIAFASPNENNKTGCQIWS-EGTNFTDAV-FANPVFTYR 332 (351)
Q Consensus 256 d~F~~~~~v~~~p~~~~~~~~~~~~~s~~~C~~~CL~-nCSC~Ay~y~~~~~g~gC~lw~-~~l~~~n~~-~~~~~~~~~ 332 (351)
..|..++++ .+++...... ...++++|++.|++ +|+|.||.|. ..+.+|.+|. +.+ .+.+ .. ..+.
T Consensus 4 ~~f~~~~~~-~l~~~~~~~~---~~~s~~~C~~~C~~~~~~C~s~~y~--~~~~~C~l~~~~~~--~~~~~~~---~~~~ 72 (78)
T smart00473 4 DCFVRLPNT-KLPGFSRIVI---SVASLEECASKCLNSNCSCRSFTYN--NGTKGCLLWSESSL--GDARLFP---SGGV 72 (78)
T ss_pred ceeEEecCc-cCCCCcceeE---cCCCHHHHHHHhCCCCCceEEEEEc--CCCCEEEEeeCCcc--ccceecc---cCCc
Confidence 569999999 8885543322 22689999999999 9999999995 1234599998 556 6766 33 5566
Q ss_pred eEEEE
Q 039858 333 LIYIR 337 (351)
Q Consensus 333 ~~ylr 337 (351)
++|.|
T Consensus 73 ~~y~~ 77 (78)
T smart00473 73 DLYEK 77 (78)
T ss_pred eeEEe
Confidence 77776
No 9
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.41 E-value=1.4e-06 Score=71.64 Aligned_cols=86 Identities=24% Similarity=0.332 Sum_probs=59.7
Q ss_pred EEEEEcCCCcEEEeeCCCCCeeeeccCC--CCCceEEEEecCCCeEEEecccCCCCceeeeeecCCCCcccCCCceEeee
Q 039858 57 SLTIDSNDGNLKILHNGGDPIAVSSIPG--AGNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGIN 134 (351)
Q Consensus 57 ~l~l~~~~G~L~l~~~~g~~~vWst~~~--~~~~~~a~LldsGNlVl~~~~~~~~~~~~lWqSFd~PtDTlLpgq~l~~~ 134 (351)
++.+.. ||+||+.+...+.+||++.+. ......++|+++|||||++. .+. +||+|-..
T Consensus 23 ~~~~q~-dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~----~g~-~vW~S~t~-------------- 82 (114)
T smart00108 23 TLIMQN-DYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDG----DGR-VVWSSNTT-------------- 82 (114)
T ss_pred ccCCCC-CEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeC----CCC-EEEEeccc--------------
Confidence 345567 999999987522789998542 22236789999999999985 356 89997211
Q ss_pred ecCCCceEEEEeccCCCCCCceeEEeecCCCceeEEEec-CCeeEEEe
Q 039858 135 LEADKKWFLQSWITEESPAQGSFTLGVDPNFTNHLSIWW-RGEFHSNI 181 (351)
Q Consensus 135 ~~tg~~~~L~Sw~s~~d~s~G~f~l~~~~~~~~~l~~~~-~~~~yW~~ 181 (351)
...+.|.+.|+++|+.+ +++ ...+.|.+
T Consensus 83 -----------------~~~~~~~~~L~ddGnlv--l~~~~~~~~W~S 111 (114)
T smart00108 83 -----------------GANGNYVLVLLDDGNLV--IYDSDGNFLWQS 111 (114)
T ss_pred -----------------CCCCceEEEEeCCCCEE--EECCCCCEEeCC
Confidence 12456888999999854 454 34678865
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.27 E-value=6.5e-06 Score=67.95 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=57.5
Q ss_pred CCcEEEeeCCCCCeeeeccCCC--CCceEEEEecCCCeEEEecccCCCCceeeeeecCCCCcccCCCceEeeeecCCCce
Q 039858 64 DGNLKILHNGGDPIAVSSIPGA--GNNTIAILQDSGNLVLQEANHDGSTRRVLWQSFDYPTDTFLPGMKLGINLEADKKW 141 (351)
Q Consensus 64 ~G~L~l~~~~g~~~vWst~~~~--~~~~~a~LldsGNlVl~~~~~~~~~~~~lWqSFd~PtDTlLpgq~l~~~~~tg~~~ 141 (351)
+|+|++.+...+.+||++.+.. .....+.|+++|||||++. ++. +||+|-..
T Consensus 30 dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~----~g~-~vW~S~~~--------------------- 83 (116)
T cd00028 30 DYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDG----SGT-VVWSSNTT--------------------- 83 (116)
T ss_pred eEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcC----CCc-EEEEeccc---------------------
Confidence 7999998764227899995532 3456789999999999985 346 89997321
Q ss_pred EEEEeccCCCCCCceeEEeecCCCceeEEEec-CCeeEEEec
Q 039858 142 FLQSWITEESPAQGSFTLGVDPNFTNHLSIWW-RGEFHSNIG 182 (351)
Q Consensus 142 ~L~Sw~s~~d~s~G~f~l~~~~~~~~~l~~~~-~~~~yW~~g 182 (351)
...+.+.+.|+++|+..+ ++ ...+.|.+.
T Consensus 84 ----------~~~~~~~~~L~ddGnlvl--~~~~~~~~W~Sf 113 (116)
T cd00028 84 ----------RVNGNYVLVLLDDGNLVL--YDSDGNFLWQSF 113 (116)
T ss_pred ----------CCCCceEEEEeCCCCEEE--ECCCCCEEEcCC
Confidence 024568889999998544 43 356788764
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.01 E-value=7.9e-05 Score=61.49 Aligned_cols=94 Identities=20% Similarity=0.330 Sum_probs=60.8
Q ss_pred CCeeEEEeecCCCCCceEEEEEEecCCCCCCCCCCcEEEEe-CCCCCCcCCCcEEEEEcCCCcEEEeeCCCCCeeeeccC
Q 039858 5 NQRFRLGFFNPPSTTTHYLAISYVKPHELGDDETDKLVWIA-NRNTPIFDTSGSLTIDSNDGNLKILHNGGDPIAVSSIP 83 (351)
Q Consensus 5 ~g~F~lGF~~~~~~~~~~lgIw~~~~~~~~~~~~~~~vW~A-nr~~pv~~~~~~l~l~~~~G~L~l~~~~g~~~vWst~~ 83 (351)
+|.+.|-|...++ | +.|. ...+++|.. +...... ....++|.+ +|||||+|..+ .++|++..
T Consensus 18 s~~~~L~l~~dGn-----L-vl~~--------~~~~~iWss~~t~~~~~-~~~~~~L~~-~GNlvl~d~~~-~~lW~Sf~ 80 (114)
T PF01453_consen 18 SGNYTLILQSDGN-----L-VLYD--------SNGSVIWSSNNTSGRGN-SGCYLVLQD-DGNLVLYDSSG-NVLWQSFD 80 (114)
T ss_dssp ETTEEEEEETTSE-----E-EEEE--------TTTEEEEE--S-TTSS--SSEEEEEET-TSEEEEEETTS-EEEEESTT
T ss_pred cccccceECCCCe-----E-EEEc--------CCCCEEEEecccCCccc-cCeEEEEeC-CCCEEEEeecc-eEEEeecC
Confidence 3678888876543 1 2344 235679999 4343321 356899999 99999999888 99999932
Q ss_pred CCCCceEEEEec--CCCeEEEecccCCCCceeeeeecCCCC
Q 039858 84 GAGNNTIAILQD--SGNLVLQEANHDGSTRRVLWQSFDYPT 122 (351)
Q Consensus 84 ~~~~~~~a~Lld--sGNlVl~~~~~~~~~~~~lWqSFd~Pt 122 (351)
....+.+.+++ .||++ +.. ... ++|.|-+.|+
T Consensus 81 -~ptdt~L~~q~l~~~~~~-~~~----~~~-~sw~s~~dps 114 (114)
T PF01453_consen 81 -YPTDTLLPGQKLGDGNVT-GKN----DSL-TSWSSNTDPS 114 (114)
T ss_dssp -SSS-EEEEEET--TSEEE-EES----TSS-EEEESS----
T ss_pred -CCccEEEeccCcccCCCc-ccc----ceE-EeECCCCCCC
Confidence 23457778887 88888 542 235 8999988774
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.59 E-value=8.6e-05 Score=56.14 Aligned_cols=49 Identities=24% Similarity=0.349 Sum_probs=34.6
Q ss_pred EecccccCCCCCcceeecCCCCChHHHHHHhccCCceEEEeccCCCCCCc-eEEecC
Q 039858 260 TITALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENNKTG-CQIWSE 315 (351)
Q Consensus 260 ~~~~v~~~p~~~~~~~~~~~~~s~~~C~~~CL~nCSC~Ay~y~~~~~g~g-C~lw~~ 315 (351)
.++++ .++..+.... ...+.++|++.|+.+|+|.||.|. .+.+ |+++..
T Consensus 8 ~~~~~-~~~g~d~~~~---~~~s~~~Cq~~C~~~~~C~afT~~---~~~~~C~lk~~ 57 (73)
T cd01100 8 QGSNV-DFRGGDLSTV---FASSAEQCQAACTADPGCLAFTYN---TKSKKCFLKSS 57 (73)
T ss_pred ccCCC-ccccCCccee---ecCCHHHHHHHcCCCCCceEEEEE---CCCCeEEcccC
Confidence 34566 6665544322 125889999999999999999995 3344 999754
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=93.42 E-value=0.077 Score=39.56 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=37.7
Q ss_pred ceEEecccccCCCCCcceeecCCCCChHHHHHHhccCCc-eEEEeccCCCCCCc-eEEecCCC
Q 039858 257 DFKTITALSGDISNDGFTFKESDNMTINDCQLACQKNCS-CIAFASPNENNKTG-CQIWSEGT 317 (351)
Q Consensus 257 ~F~~~~~v~~~p~~~~~~~~~~~~~s~~~C~~~CL~nCS-C~Ay~y~~~~~g~g-C~lw~~~l 317 (351)
.|..+++. .+........ ...++++|.+.|+.+=. |.+|.|. ...+ |.|.....
T Consensus 3 ~f~~~~~~-~l~~~~~~~~---~v~s~~~C~~~C~~~~~~C~s~~y~---~~~~~C~L~~~~~ 58 (79)
T PF00024_consen 3 AFERIPGY-RLSGHSIKEI---NVPSLEECAQLCLNEPRRCKSFNYD---PSSKTCYLSSSDR 58 (79)
T ss_dssp TEEEEEEE-EEESCEEEEE---EESSHHHHHHHHHHSTT-ESEEEEE---TTTTEEEEECSSS
T ss_pred CeEEECCE-EEeCCcceEE---cCCCHHHHHhhcCcCcccCCeEEEE---CCCCEEEEcCCCC
Confidence 47777777 6655322211 11589999999999999 9999996 3344 99976543
No 14
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=90.09 E-value=0.52 Score=36.26 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=33.3
Q ss_pred cccccCCCCCcceeecCCCCChHHHHHHhccCCceEEEeccCCCC-CCceEEecC
Q 039858 262 TALSGDISNDGFTFKESDNMTINDCQLACQKNCSCIAFASPNENN-KTGCQIWSE 315 (351)
Q Consensus 262 ~~v~~~p~~~~~~~~~~~~~s~~~C~~~CL~nCSC~Ay~y~~~~~-g~gC~lw~~ 315 (351)
+++ ++...+.... ...+.++|++.|..+=.|.+|.|..++. ...|+++..
T Consensus 7 ~~~-df~G~Dl~~~---~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 7 KNV-DFRGSDINTV---YVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred cCc-cccCceeeee---ecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 455 5555444332 2268999999999999999999963111 115999743
No 15
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=87.14 E-value=0.44 Score=32.46 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=17.1
Q ss_pred CChHHHHHHhccCCceEEEecc
Q 039858 281 MTINDCQLACQKNCSCIAFASP 302 (351)
Q Consensus 281 ~s~~~C~~~CL~nCSC~Ay~y~ 302 (351)
.+.++|++.|..+=.|.+|.|.
T Consensus 16 ~s~~~C~~~C~~~~~C~~~~~~ 37 (51)
T PF14295_consen 16 SSPEECQAACAADPGCQAFTFN 37 (51)
T ss_dssp --HHHHHHHHHTSTT--EEEEE
T ss_pred CCHHHHHHHccCCCCCCEEEEE
Confidence 5899999999999999999996
No 16
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=86.51 E-value=2.5 Score=31.05 Aligned_cols=31 Identities=16% Similarity=0.493 Sum_probs=26.0
Q ss_pred CChHHHHHHhccCCceEEEeccCCCCCCceEEecC
Q 039858 281 MTINDCQLACQKNCSCIAFASPNENNKTGCQIWSE 315 (351)
Q Consensus 281 ~s~~~C~~~CL~nCSC~Ay~y~~~~~g~gC~lw~~ 315 (351)
.+.++|-+.|..+=.|.+..+ +...|.++.-
T Consensus 20 ~sw~~Cv~~C~~~~~C~la~~----~~~~C~~y~~ 50 (71)
T PF08277_consen 20 TSWDDCVQKCYNDENCVLAYF----DSGKCYLYNY 50 (71)
T ss_pred CCHHHHhHHhCCCCEEEEEEe----CCCCEEEEEc
Confidence 678999999999999999888 3445998753
No 17
>smart00605 CW CW domain.
Probab=84.87 E-value=4.2 Score=31.86 Aligned_cols=53 Identities=11% Similarity=0.348 Sum_probs=37.0
Q ss_pred CChHHHHHHhccCCceEEEeccCCCCCCceEEec-CCCceeeee-ecCCCCCCceEEEEEec
Q 039858 281 MTINDCQLACQKNCSCIAFASPNENNKTGCQIWS-EGTNFTDAV-FANPVFTYRLIYIRETT 340 (351)
Q Consensus 281 ~s~~~C~~~CL~nCSC~Ay~y~~~~~g~gC~lw~-~~l~~~n~~-~~~~~~~~~~~ylrv~~ 340 (351)
.+.++|.+.|..+..|+.+... ....|.++. +.+ ..++ .. ...+..+=+|+..
T Consensus 22 ~sw~~Ci~~C~~~~~Cvlay~~---~~~~C~~f~~~~~--~~v~~~~--~~~~~~VAfK~~~ 76 (94)
T smart00605 22 LSWDECIQKCYEDSNCVLAYGN---SSETCYLFSYGTV--LTVKKLS--SSSGKKVAFKVST 76 (94)
T ss_pred CCHHHHHHHHhCCCceEEEecC---CCCceEEEEcCCe--EEEEEcc--CCCCcEEEEEEeC
Confidence 6789999999999999987652 224598864 344 5565 32 1456678888754
No 18
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=82.44 E-value=2.7 Score=32.04 Aligned_cols=33 Identities=18% Similarity=0.539 Sum_probs=25.6
Q ss_pred CChHHHHHHhcc--CCceEEEeccCCCCCCceEEecC
Q 039858 281 MTINDCQLACQK--NCSCIAFASPNENNKTGCQIWSE 315 (351)
Q Consensus 281 ~s~~~C~~~CL~--nCSC~Ay~y~~~~~g~gC~lw~~ 315 (351)
.++++|.+.|++ +=.|.+|.|.. ....|.|-..
T Consensus 25 ~s~~~C~~~C~~~~~f~CrSf~y~~--~~~~C~L~~~ 59 (80)
T cd01099 25 ASLEECLRKCLEETEFTCRSFNYNY--KSKECILSDE 59 (80)
T ss_pred CCHHHHHHHhCCCCCceEeEEEEEc--CCCEEEEeCC
Confidence 689999999999 89999999851 2223988543
No 19
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.86 E-value=9.6 Score=36.20 Aligned_cols=46 Identities=26% Similarity=0.428 Sum_probs=35.5
Q ss_pred CCCCCcEEEEeCCCCCCcCC----CcEEEEEcCCCcEEEeeCCCCCeeeec
Q 039858 35 DDETDKLVWIANRNTPIFDT----SGSLTIDSNDGNLKILHNGGDPIAVSS 81 (351)
Q Consensus 35 ~~~~~~~vW~Anr~~pv~~~----~~~l~l~~~~G~L~l~~~~g~~~vWst 81 (351)
+..+.+..|.|.|..|+..+ +....++.+||+|.-.++.| +.||.-
T Consensus 165 ~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG-~qvwr~ 214 (354)
T KOG4649|consen 165 NPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG-RQVWRP 214 (354)
T ss_pred CCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC-cEEEee
Confidence 34456889999999999865 23455554599999999999 999975
No 20
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.11 E-value=41 Score=26.66 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=22.2
Q ss_pred CCCCcEEEEeCCCCCCcCCCcEEEEEcCCCcEEEee
Q 039858 36 DETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILH 71 (351)
Q Consensus 36 ~~~~~~vW~Anr~~pv~~~~~~l~l~~~~G~L~l~~ 71 (351)
.|..++.|+-+....+. ...++.+.. +|+|.+.+
T Consensus 31 ~P~P~i~W~~~~~~~i~-~~~Ri~~~~-~GnL~fs~ 64 (95)
T cd05845 31 AVPLRIYWMNSDLLHIT-QDERVSMGQ-NGNLYFAN 64 (95)
T ss_pred CCCCEEEEECCCCcccc-ccccEEECC-CceEEEEE
Confidence 46678889855444444 345777777 78887754
No 21
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=37.63 E-value=1.3e+02 Score=23.00 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=13.0
Q ss_pred cccCCCceEeeeecCCCceEEEEeccCCCCCCceeEEe
Q 039858 123 DTFLPGMKLGINLEADKKWFLQSWITEESPAQGSFTLG 160 (351)
Q Consensus 123 DTlLpgq~l~~~~~tg~~~~L~Sw~s~~d~s~G~f~l~ 160 (351)
-+|-||..+.+. ..|.... .++|.|+++
T Consensus 54 ~~l~pGe~~~~~---------~~~~~~~-~~~G~Y~~~ 81 (82)
T PF12690_consen 54 ETLEPGESLTYE---------ETWDLKD-LSPGEYTLE 81 (82)
T ss_dssp EEE-TT-EEEEE---------EEESS-----SEEEEEE
T ss_pred EEECCCCEEEEE---------EEECCCC-CCCceEEEe
Confidence 345566666543 2343322 228999875
No 22
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=30.30 E-value=91 Score=18.53 Aligned_cols=16 Identities=38% Similarity=0.800 Sum_probs=10.8
Q ss_pred EEEEcCCCcEEEeeCCC
Q 039858 58 LTIDSNDGNLKILHNGG 74 (351)
Q Consensus 58 l~l~~~~G~L~l~~~~g 74 (351)
+.+.+ +|+|++.|...
T Consensus 7 vav~~-~g~i~VaD~~n 22 (28)
T PF01436_consen 7 VAVDS-DGNIYVADSGN 22 (28)
T ss_dssp EEEET-TSEEEEEECCC
T ss_pred EEEeC-CCCEEEEECCC
Confidence 56666 77777777654
No 23
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=27.23 E-value=2.1e+02 Score=28.05 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=41.0
Q ss_pred CCcEEEEeCCC----------CCCcCCCcEEEEEcCCCcEEEeeC-CCCCeeeeccCCC--------------CC-----
Q 039858 38 TDKLVWIANRN----------TPIFDTSGSLTIDSNDGNLKILHN-GGDPIAVSSIPGA--------------GN----- 87 (351)
Q Consensus 38 ~~~~vW~Anr~----------~pv~~~~~~l~l~~~~G~L~l~~~-~g~~~vWst~~~~--------------~~----- 87 (351)
...++|..+-. .|+... +++.+...+|.|+=.|. +| .++|+..... ..
T Consensus 43 ~~~~~W~~~~g~g~~~~~~~~sPvv~~-~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~ 120 (394)
T PRK11138 43 TPTTVWSTSVGDGVGDYYSRLHPAVAY-NKVYAADRAGLVKALDADTG-KEIWSVDLSEKDGWFSKNKSALLSGGVTVAG 120 (394)
T ss_pred CcceeeEEEcCCCCccceeeeccEEEC-CEEEEECCCCeEEEEECCCC-cEeeEEcCCCcccccccccccccccccEEEC
Confidence 44568886522 344432 35555432687777775 57 8999873211 00
Q ss_pred ceEEEEecCCCeEEEecccCCCCceeeeee
Q 039858 88 NTIAILQDSGNLVLQEANHDGSTRRVLWQS 117 (351)
Q Consensus 88 ~~~a~LldsGNlVl~~~~~~~~~~~~lWqS 117 (351)
..+..--.+|+|+-.|. .+++ .+|+-
T Consensus 121 ~~v~v~~~~g~l~ald~---~tG~-~~W~~ 146 (394)
T PRK11138 121 GKVYIGSEKGQVYALNA---EDGE-VAWQT 146 (394)
T ss_pred CEEEEEcCCCEEEEEEC---CCCC-Ccccc
Confidence 01112235677777774 3566 89963
No 24
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=26.85 E-value=2.7e+02 Score=26.88 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=40.3
Q ss_pred CcEEEEeCCCCC----------CcCCCcEEEEEcCCCcEEEee-CCCCCeeeeccCCC--CC------ceEEEEecCCCe
Q 039858 39 DKLVWIANRNTP----------IFDTSGSLTIDSNDGNLKILH-NGGDPIAVSSIPGA--GN------NTIAILQDSGNL 99 (351)
Q Consensus 39 ~~~vW~Anr~~p----------v~~~~~~l~l~~~~G~L~l~~-~~g~~~vWst~~~~--~~------~~~a~LldsGNl 99 (351)
..++|..+-..+ +.. ...+.+...+|.|+-.| .+| .++|+..... .. ..+..-..+|+|
T Consensus 40 ~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l 117 (377)
T TIGR03300 40 VDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVGADGGLVFVGTEKGEV 117 (377)
T ss_pred ceeeeEEEcCCCcCccccccceEEE-CCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceEEcCCEEEEEcCCCEE
Confidence 457888764333 222 23555554268888888 577 8999863211 11 111122346677
Q ss_pred EEEecccCCCCceeeee
Q 039858 100 VLQEANHDGSTRRVLWQ 116 (351)
Q Consensus 100 Vl~~~~~~~~~~~~lWq 116 (351)
+-.|. .+++ ++|+
T Consensus 118 ~ald~---~tG~-~~W~ 130 (377)
T TIGR03300 118 IALDA---EDGK-ELWR 130 (377)
T ss_pred EEEEC---CCCc-Eeee
Confidence 76763 3566 8997
No 25
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=25.96 E-value=6.4e+02 Score=24.80 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=46.5
Q ss_pred EEeCCCCCCcCCCcEEEEEcCCCcEEEeeC-CCCCeeeecc------C-----CCCCceEEEEecCCCeEEEecccCCCC
Q 039858 43 WIANRNTPIFDTSGSLTIDSNDGNLKILHN-GGDPIAVSSI------P-----GAGNNTIAILQDSGNLVLQEANHDGST 110 (351)
Q Consensus 43 W~Anr~~pv~~~~~~l~l~~~~G~L~l~~~-~g~~~vWst~------~-----~~~~~~~a~LldsGNlVl~~~~~~~~~ 110 (351)
=.||.+..+.+.-..+.-+. .|+|+++.+ +|.--+|... + .++.+.+|+...+|..+|... ..+-
T Consensus 252 vsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--~DS~ 328 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--KDST 328 (430)
T ss_pred eecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC--Ccce
Confidence 35676665554334577777 899999865 4523478641 1 245578899999999999875 2233
Q ss_pred ceeeee
Q 039858 111 RRVLWQ 116 (351)
Q Consensus 111 ~~~lWq 116 (351)
. .||+
T Consensus 329 v-kLWE 333 (430)
T KOG0640|consen 329 V-KLWE 333 (430)
T ss_pred e-eeee
Confidence 4 5897
No 26
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=25.84 E-value=96 Score=29.42 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCCCCcEEEEeCCCCCCcCCCcEEEEEcCCCcEEEeeC
Q 039858 35 DDETDKLVWIANRNTPIFDTSGSLTIDSNDGNLKILHN 72 (351)
Q Consensus 35 ~~~~~~~vW~Anr~~pv~~~~~~l~l~~~~G~L~l~~~ 72 (351)
.+.+++..|+...+.++.+. +.+.|++ .|.|++.+=
T Consensus 9 E~iDP~y~W~GP~g~~l~gn-~~~nIT~-TG~L~~~~F 44 (271)
T PF07354_consen 9 ELIDPTYLWTGPNGKPLSGN-SYVNITE-TGKLMFKNF 44 (271)
T ss_pred ccCCCceEEECCCCcccCCC-CeEEEcc-CceEEeecc
Confidence 34466778988888888754 5788888 888888653
No 27
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=24.12 E-value=6.4e+02 Score=24.11 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCCCCcEEEEeCCC--------------------CCCcCCCcEEEEEcCC------------CcEEEee
Q 039858 24 AISYVKPHELGDDETDKLVWIANRN--------------------TPIFDTSGSLTIDSND------------GNLKILH 71 (351)
Q Consensus 24 gIw~~~~~~~~~~~~~~~vW~Anr~--------------------~pv~~~~~~l~l~~~~------------G~L~l~~ 71 (351)
.|++. .-....|+|..... .+-.+...+|.|.+ + |.++-.|
T Consensus 166 ~i~~I------~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD-N~~~~~~~~~~s~~~v~~ld 238 (299)
T PF14269_consen 166 TIYKI------DPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD-NANSDFNGTEPSRGLVLELD 238 (299)
T ss_pred EEEEE------ECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc-CCCCCCCCCcCCCceEEEEE
Q ss_pred CCCCCeeeec--c-----CCCCCceEEEEecCCCeEE----------EecccCCCCceeeee
Q 039858 72 NGGDPIAVSS--I-----PGAGNNTIAILQDSGNLVL----------QEANHDGSTRRVLWQ 116 (351)
Q Consensus 72 ~~g~~~vWst--~-----~~~~~~~~a~LldsGNlVl----------~~~~~~~~~~~~lWq 116 (351)
...+++.|-. . ........+++|.+||..| .+. +++ +||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~----~G~-vv~~ 295 (299)
T PF14269_consen 239 PETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTP----DGE-VVWE 295 (299)
T ss_pred CCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECC----CCC-EEEE
Done!