BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039859
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YNS|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1 And Its
Complex With A Substrate Analog
Length = 261
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 100 VEKHLSATHETAGTKGDIKILQSQVEDDLKQGVAGAVPIPPSDAGK----EEVIAALVAN 155
V+++L E + D+ +L+ Q E+D + GAVPIP + +++I A+V N
Sbjct: 39 VKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LDGAVPIPAASGNGVDDLQQMIQAVVDN 96
Query: 156 VDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSS 213
V + DRK TALKQLQGH+WR F + ++ E F DV A+ KW G K SS
Sbjct: 97 VCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSS 154
>pdb|1ZS9|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1
Length = 261
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 100 VEKHLSATHETAGTKGDIKILQSQVEDDLKQGVAGAVPIPPSDAGK----EEVIAALVAN 155
V+++L E + D+ +L+ Q E+D + GAVPIP + ++ I A+V N
Sbjct: 39 VKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LDGAVPIPAASGNGVDDLQQXIQAVVDN 96
Query: 156 VDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSS 213
V DRK TALKQLQGH WR F + + E F DV A+ KW G K SS
Sbjct: 97 VCWQXSLDRKTTALKQLQGHXWRAAFTAGRXKAEFFADVVPAVRKWREAGXKVYIYSS 154
>pdb|2G80|A Chain A, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|B Chain B, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|C Chain C, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|D Chain D, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
Length = 253
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 152 LVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEK 200
L A++ ++ D K LKQLQG++W G+ES +++ V+ D + +++
Sbjct: 88 LQAHILELVAKDVKDPILKQLQGYVWAHGYESGQIKAPVYADAIDFIKR 136
>pdb|4EIV|A Chain A, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
pdb|4EIV|B Chain B, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
A Putative Deoxyribose-Phosphate Aldolase From
Toxoplasma Gondii Me49
Length = 297
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 50 TMINLMSKEFQIKAYPKTTAVLVPNHVWRAGEVISRQLNGLTSASADSNKVEKHLSATHE 109
+ I L+ E + PKT V++ + G++ISR AD + L ATH
Sbjct: 135 SRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHA 194
Query: 110 TAGT 113
T T
Sbjct: 195 TMFT 198
>pdb|3QYQ|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
pdb|3QYQ|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of A Putative
Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
Me49
Length = 293
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 50 TMINLMSKEFQIKAYPKTTAVLVPNHVWRAGEVISRQLNGLTSASADSNKVEKHLSATHE 109
+ I L+ E + PKT V++ + G++ISR AD + L ATH
Sbjct: 136 SRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHA 195
Query: 110 TAGT 113
T T
Sbjct: 196 TMFT 199
>pdb|2BVJ|A Chain A, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
pdb|2BVJ|B Chain B, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
pdb|2C6H|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2C6H|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2C7X|A Chain A, Crystal Structure Of Narbomycin-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CA0|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CA0|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CD8|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CD8|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
Length = 436
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 4 ENTCVLSGDGTILSL------PSRKPYPHKPTYETSNAGAGIHGHGIEYFLVTMINLMSK 57
+ T + +GD ++ L P R P PH+ AG GHGI + + + +
Sbjct: 325 DGTVIPAGDTVLVVLADAHRTPERFPDPHRFDIRRDTAGHLAFGHGIHFCIGAPLARLEA 384
Query: 58 EFQIKA 63
++A
Sbjct: 385 RIAVRA 390
>pdb|2WHW|A Chain A, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WHW|B Chain B, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WI9|A Chain A, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WI9|B Chain B, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
Length = 436
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 4 ENTCVLSGDGTILSL------PSRKPYPHKPTYETSNAGAGIHGHGIEYFLVTMINLMSK 57
+ T + +GD ++ L P R P PH+ AG GHGI + + + +
Sbjct: 325 DGTVIPAGDTVLVVLADAHRTPERFPDPHRFDIRRDTAGHLAFGHGIHFCIGAPLARLEA 384
Query: 58 EFQIKA 63
++A
Sbjct: 385 RIAVRA 390
>pdb|2VZ7|A Chain A, Crystal Structure Of The Yc-17-Bound Pikc D50n Mutant
pdb|2VZ7|B Chain B, Crystal Structure Of The Yc-17-Bound Pikc D50n Mutant
pdb|2VZM|A Chain A, Crystal Structure Of The Narbomycin-Bound Pikc D50n Mutant
pdb|2VZM|B Chain B, Crystal Structure Of The Narbomycin-Bound Pikc D50n Mutant
Length = 436
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 4 ENTCVLSGDGTILSL------PSRKPYPHKPTYETSNAGAGIHGHGIEYFLVTMINLMSK 57
+ T + +GD ++ L P R P PH+ AG GHGI + + + +
Sbjct: 325 DGTVIPAGDTVLVVLADAHRTPERFPDPHRFDIRRDTAGHLAFGHGIHFCIGAPLARLEA 384
Query: 58 EFQIKA 63
++A
Sbjct: 385 RIAVRA 390
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 224 SYFLSKEIDVYFGLIYRFGLDAI--ISVQPGNGPLPESRGFKTINSFAG 270
+++L K ID F +DAI I +PG LP +G K + SFAG
Sbjct: 186 NWWLDKGIDG-------FRIDAISHIKKKPGLPDLPNPKGLKYVPSFAG 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,254,759
Number of Sequences: 62578
Number of extensions: 333625
Number of successful extensions: 546
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 11
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)