Query 039859
Match_columns 271
No_of_seqs 278 out of 830
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4229 Predicted enolase-phos 100.0 1.8E-45 3.9E-50 315.2 14.7 169 82-269 6-224 (229)
2 KOG2630 Enolase-phosphatase E- 100.0 4.7E-43 1E-47 309.2 14.5 187 82-271 10-248 (254)
3 TIGR01691 enolase-ppase 2,3-di 100.0 8.3E-39 1.8E-43 285.1 16.0 166 82-271 3-220 (220)
4 KOG2631 Class II aldolase/addu 99.8 4.7E-20 1E-24 160.9 5.4 80 1-81 64-200 (238)
5 PRK06755 hypothetical protein; 99.7 1.1E-17 2.4E-22 148.3 6.8 80 1-80 54-177 (209)
6 PRK06754 mtnB methylthioribulo 99.6 1.4E-15 3E-20 134.6 5.9 80 1-80 54-178 (208)
7 PRK06833 L-fuculose phosphate 99.5 3.5E-15 7.6E-20 132.4 4.4 79 1-80 52-165 (214)
8 PRK08087 L-fuculose phosphate 99.5 1E-14 2.2E-19 129.5 3.4 78 1-80 50-163 (215)
9 TIGR03328 salvage_mtnB methylt 99.5 4.6E-14 9.9E-19 123.4 6.5 79 1-80 42-169 (193)
10 PRK05874 L-fuculose-phosphate 99.5 2.8E-14 6E-19 127.2 5.2 80 1-80 52-168 (217)
11 PRK08193 araD L-ribulose-5-pho 99.5 4.2E-14 9.1E-19 127.0 5.1 52 1-53 51-107 (231)
12 PRK07490 hypothetical protein; 99.4 5.9E-14 1.3E-18 127.2 4.7 80 1-80 58-175 (245)
13 cd00398 Aldolase_II Class II A 99.4 1.2E-13 2.7E-18 121.8 6.5 78 1-80 49-165 (209)
14 PRK08660 L-fuculose phosphate 99.4 5.7E-14 1.2E-18 121.5 4.2 78 1-80 45-155 (181)
15 PRK08333 L-fuculose phosphate 99.4 9.3E-14 2E-18 120.4 5.5 78 1-80 48-161 (184)
16 TIGR01449 PGP_bact 2-phosphogl 99.4 6.6E-13 1.4E-17 115.1 10.1 96 176-271 71-209 (213)
17 PRK06557 L-ribulose-5-phosphat 99.4 8.6E-14 1.9E-18 123.9 4.4 79 1-80 57-173 (221)
18 PRK06357 hypothetical protein; 99.4 8E-14 1.7E-18 124.2 4.1 51 1-52 58-114 (216)
19 TIGR01086 fucA L-fuculose phos 99.4 6.4E-14 1.4E-18 124.3 3.4 78 1-80 49-162 (214)
20 PRK13288 pyrophosphatase PpaX; 99.4 4.4E-13 9.5E-18 117.1 8.6 96 176-271 68-206 (214)
21 PRK08130 putative aldolase; Va 99.4 9.3E-14 2E-18 123.1 4.2 78 1-80 51-168 (213)
22 COG0546 Gph Predicted phosphat 99.4 6.6E-13 1.4E-17 117.5 9.4 85 187-271 87-213 (220)
23 PLN03243 haloacid dehalogenase 99.4 1.1E-12 2.5E-17 119.5 11.0 172 71-271 14-230 (260)
24 PRK09220 methylthioribulose-1- 99.4 2.3E-13 4.9E-18 120.1 6.1 52 1-53 51-107 (204)
25 PRK05834 hypothetical protein; 99.4 1.4E-13 3E-18 120.8 4.7 77 1-80 51-166 (194)
26 PRK06661 hypothetical protein; 99.4 1.1E-13 2.3E-18 124.5 3.9 80 1-80 49-166 (231)
27 PRK13213 araD L-ribulose-5-pho 99.4 1.9E-13 4.1E-18 123.1 4.6 52 1-53 51-108 (231)
28 PRK06486 hypothetical protein; 99.4 1.2E-13 2.7E-18 126.3 3.5 79 1-80 74-191 (262)
29 PLN02770 haloacid dehalogenase 99.4 2.1E-12 4.6E-17 116.3 11.4 85 186-270 105-230 (248)
30 PRK12348 sgaE L-ribulose-5-pho 99.4 1.7E-13 3.6E-18 123.0 4.0 52 1-53 50-106 (228)
31 PRK12347 sgbE L-ribulose-5-pho 99.4 3.3E-13 7.1E-18 121.4 5.6 52 1-53 51-108 (231)
32 PRK07090 class II aldolase/add 99.4 2.4E-13 5.1E-18 124.3 4.5 79 1-80 77-192 (260)
33 COG0235 AraD Ribulose-5-phosph 99.4 5.3E-14 1.2E-18 125.4 0.1 52 1-53 54-110 (219)
34 PRK13145 araD L-ribulose-5-pho 99.4 2.8E-13 6E-18 122.1 4.1 52 1-53 52-108 (234)
35 TIGR01428 HAD_type_II 2-haloal 99.4 1E-11 2.2E-16 107.1 13.6 68 188-255 91-198 (198)
36 PRK10826 2-deoxyglucose-6-phos 99.4 4.8E-12 1E-16 111.3 10.9 87 185-271 88-215 (222)
37 PRK07044 aldolase II superfami 99.4 5E-13 1.1E-17 121.6 4.4 80 1-80 64-180 (252)
38 TIGR00760 araD L-ribulose-5-ph 99.4 4.4E-13 9.6E-18 120.5 4.0 52 1-53 51-108 (231)
39 TIGR02253 CTE7 HAD superfamily 99.4 1.2E-11 2.5E-16 108.0 12.9 85 187-271 92-220 (221)
40 PF00596 Aldolase_II: Class II 99.3 6.1E-13 1.3E-17 114.5 3.7 80 1-80 44-165 (184)
41 PRK06208 hypothetical protein; 99.3 5.7E-13 1.2E-17 122.7 3.2 78 1-80 90-206 (274)
42 PRK13226 phosphoglycolate phos 99.3 6.6E-12 1.4E-16 111.5 9.0 85 187-271 93-220 (229)
43 PRK11587 putative phosphatase; 99.3 3.2E-11 7E-16 106.0 13.0 86 185-271 79-203 (218)
44 PLN02575 haloacid dehalogenase 99.3 1.6E-11 3.5E-16 117.7 10.9 95 176-271 202-337 (381)
45 TIGR01454 AHBA_synth_RP 3-amin 99.3 2.7E-11 5.9E-16 105.1 11.1 86 186-271 72-199 (205)
46 PRK13222 phosphoglycolate phos 99.3 7.1E-11 1.5E-15 103.1 12.7 96 176-271 79-217 (226)
47 PRK13223 phosphoglycolate phos 99.3 2.9E-11 6.2E-16 110.7 10.3 96 176-271 88-225 (272)
48 TIGR01422 phosphonatase phosph 99.3 1.3E-11 2.8E-16 110.7 8.0 67 185-251 95-203 (253)
49 PF13419 HAD_2: Haloacid dehal 99.2 3.1E-11 6.7E-16 99.4 8.8 65 184-248 72-176 (176)
50 PRK03634 rhamnulose-1-phosphat 99.2 5.8E-12 1.3E-16 116.0 4.7 79 2-80 85-220 (274)
51 PLN02940 riboflavin kinase 99.2 4.6E-11 1E-15 114.6 10.8 85 187-271 91-216 (382)
52 PRK13225 phosphoglycolate phos 99.2 4.6E-11 1E-15 109.8 8.6 96 176-271 129-263 (273)
53 TIGR02624 rhamnu_1P_ald rhamnu 99.2 1.1E-11 2.4E-16 114.0 3.9 77 3-80 86-218 (270)
54 PRK09449 dUMP phosphatase; Pro 99.2 5.2E-10 1.1E-14 98.1 14.2 83 188-271 94-218 (224)
55 PRK13478 phosphonoacetaldehyde 99.2 6.1E-11 1.3E-15 107.6 8.4 76 177-252 88-206 (267)
56 PRK06698 bifunctional 5'-methy 99.2 2.3E-10 4.9E-15 111.9 12.6 85 187-271 328-449 (459)
57 PRK10748 flavin mononucleotide 99.2 5.9E-10 1.3E-14 99.7 14.0 84 187-271 111-234 (238)
58 TIGR03351 PhnX-like phosphonat 99.2 2.7E-10 6E-15 99.6 11.3 84 187-270 85-214 (220)
59 TIGR02254 YjjG/YfnB HAD superf 99.1 7.7E-10 1.7E-14 96.3 12.6 84 187-271 95-220 (224)
60 TIGR01990 bPGM beta-phosphoglu 99.1 1.6E-09 3.4E-14 91.8 11.3 61 188-248 86-184 (185)
61 TIGR02252 DREG-2 REG-2-like, H 99.0 4.3E-09 9.4E-14 90.9 13.1 60 188-247 104-203 (203)
62 PRK10563 6-phosphogluconate ph 99.0 9.6E-10 2.1E-14 96.3 7.5 62 186-250 85-187 (221)
63 PRK14988 GMP/IMP nucleotidase; 99.0 1.8E-09 3.9E-14 96.0 8.4 65 186-250 90-194 (224)
64 COG1011 Predicted hydrolase (H 99.0 9.2E-09 2E-13 89.8 12.2 83 187-270 97-221 (229)
65 PLN02779 haloacid dehalogenase 99.0 1.3E-08 2.9E-13 93.9 13.7 84 188-271 143-268 (286)
66 TIGR02009 PGMB-YQAB-SF beta-ph 98.9 5.5E-09 1.2E-13 88.4 10.2 62 187-248 86-185 (185)
67 TIGR01509 HAD-SF-IA-v3 haloaci 98.9 6.4E-09 1.4E-13 87.4 9.7 61 188-248 84-183 (183)
68 TIGR02247 HAD-1A3-hyp Epoxide 98.9 6.9E-09 1.5E-13 90.3 9.5 65 187-251 92-198 (211)
69 PRK09456 ?-D-glucose-1-phospha 98.9 6.1E-09 1.3E-13 90.3 8.6 64 188-251 83-187 (199)
70 PLN02919 haloacid dehalogenase 98.9 2.6E-08 5.7E-13 106.6 13.7 84 188-271 160-285 (1057)
71 PLN02811 hydrolase 98.8 2E-08 4.3E-13 88.5 8.7 85 187-271 76-206 (220)
72 COG0637 Predicted phosphatase/ 98.7 1.3E-07 2.7E-12 84.2 12.3 74 177-250 74-187 (221)
73 PRK10725 fructose-1-P/6-phosph 98.7 1.7E-07 3.7E-12 79.7 12.4 60 188-249 87-186 (188)
74 TIGR01993 Pyr-5-nucltdase pyri 98.6 1.2E-07 2.6E-12 80.8 8.3 59 187-248 82-184 (184)
75 PHA02597 30.2 hypothetical pro 98.6 6.2E-08 1.3E-12 83.5 6.5 81 186-271 71-194 (197)
76 PRK08324 short chain dehydroge 98.6 2.6E-08 5.7E-13 102.0 4.3 79 1-81 69-199 (681)
77 TIGR00213 GmhB_yaeD D,D-heptos 98.6 1.1E-07 2.4E-12 81.3 6.0 90 181-271 18-174 (176)
78 PRK06769 hypothetical protein; 98.5 9E-08 2E-12 82.0 4.5 84 187-270 26-166 (173)
79 TIGR01548 HAD-SF-IA-hyp1 haloa 98.5 2.3E-06 5.1E-11 73.9 11.6 30 187-216 104-133 (197)
80 TIGR01549 HAD-SF-IA-v1 haloaci 98.4 9.5E-07 2E-11 72.9 8.5 30 187-216 62-91 (154)
81 PLN02954 phosphoserine phospha 98.3 1.8E-06 3.9E-11 75.7 8.2 29 188-216 83-111 (224)
82 PRK08942 D,D-heptose 1,7-bisph 98.3 8.1E-07 1.8E-11 76.0 4.8 89 181-270 21-171 (181)
83 TIGR02632 RhaD_aldol-ADH rhamn 98.3 1.1E-06 2.3E-11 90.3 6.2 79 1-81 55-187 (676)
84 TIGR01656 Histidinol-ppas hist 98.1 2.9E-06 6.4E-11 70.5 5.0 28 188-215 26-53 (147)
85 TIGR01662 HAD-SF-IIIA HAD-supe 98.1 3.8E-06 8.2E-11 67.9 4.6 70 181-250 17-132 (132)
86 TIGR00338 serB phosphoserine p 98.0 3.1E-05 6.7E-10 67.5 9.1 29 188-216 84-112 (219)
87 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.0 6.6E-05 1.4E-09 64.1 10.1 29 188-216 79-107 (201)
88 PRK11590 hypothetical protein; 97.9 4.1E-05 8.8E-10 67.3 8.6 38 176-216 85-123 (211)
89 PRK11009 aphA acid phosphatase 97.9 3.7E-05 7.9E-10 69.7 8.2 78 183-260 108-225 (237)
90 TIGR01685 MDP-1 magnesium-depe 97.9 9.5E-06 2.1E-10 70.2 4.2 66 185-250 41-158 (174)
91 PRK09552 mtnX 2-hydroxy-3-keto 97.9 3.1E-05 6.7E-10 68.2 7.5 29 188-216 73-101 (219)
92 TIGR01261 hisB_Nterm histidino 97.9 1.4E-05 2.9E-10 68.1 4.9 30 186-215 26-55 (161)
93 TIGR01668 YqeG_hyp_ppase HAD s 97.9 2E-05 4.3E-10 67.3 5.5 65 188-252 42-139 (170)
94 TIGR01493 HAD-SF-IA-v2 Haloaci 97.9 1.8E-05 3.8E-10 66.6 4.8 23 187-216 88-110 (175)
95 TIGR01672 AphA HAD superfamily 97.8 8.5E-05 1.8E-09 67.3 7.8 78 183-260 108-225 (237)
96 PRK13582 thrH phosphoserine ph 97.7 8E-05 1.7E-09 64.2 6.5 29 187-216 66-94 (205)
97 TIGR03333 salvage_mtnX 2-hydro 97.6 0.00014 3.1E-09 63.8 7.2 30 187-216 68-97 (214)
98 KOG2914 Predicted haloacid-hal 97.6 0.0018 3.9E-08 58.2 13.8 65 186-250 89-197 (222)
99 PRK05446 imidazole glycerol-ph 97.5 0.00017 3.7E-09 69.0 5.7 32 183-214 24-55 (354)
100 PHA02530 pseT polynucleotide k 97.4 0.00027 5.9E-09 64.8 5.7 66 185-250 183-297 (300)
101 PRK11133 serB phosphoserine ph 97.3 0.0017 3.8E-08 61.3 10.3 29 188-216 180-208 (322)
102 TIGR01489 DKMTPPase-SF 2,3-dik 97.2 0.002 4.2E-08 54.2 8.8 29 188-216 71-99 (188)
103 TIGR01488 HAD-SF-IB Haloacid D 97.2 0.0018 4E-08 54.1 8.1 29 188-216 72-100 (177)
104 TIGR01545 YfhB_g-proteo haloac 97.0 0.003 6.6E-08 55.8 7.9 38 176-216 84-122 (210)
105 TIGR01452 PGP_euk phosphoglyco 96.9 0.00069 1.5E-08 62.1 3.2 81 190-271 144-279 (279)
106 KOG3085 Predicted hydrolase (H 96.8 0.001 2.2E-08 60.4 3.6 69 186-254 110-218 (237)
107 smart00577 CPDc catalytic doma 96.8 0.0011 2.4E-08 55.2 3.5 31 185-216 41-71 (148)
108 PF06941 NT5C: 5' nucleotidase 96.7 0.0075 1.6E-07 52.1 8.3 92 176-270 59-180 (191)
109 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.7 0.001 2.2E-08 60.5 3.0 82 190-271 121-250 (257)
110 cd01427 HAD_like Haloacid deha 96.7 0.0032 7E-08 48.8 5.2 32 185-216 20-51 (139)
111 COG0241 HisB Histidinol phosph 96.5 0.0071 1.5E-07 52.8 6.5 34 187-220 29-65 (181)
112 TIGR01490 HAD-SF-IB-hyp1 HAD-s 96.4 0.024 5.1E-07 48.6 9.4 31 186-216 84-114 (202)
113 KOG3109 Haloacid dehalogenase- 96.1 0.028 6E-07 50.7 7.8 62 189-252 100-208 (244)
114 TIGR01664 DNA-3'-Pase DNA 3'-p 95.9 0.0079 1.7E-07 51.3 3.7 27 190-216 43-69 (166)
115 TIGR02244 HAD-IG-Ncltidse HAD 95.9 0.018 3.8E-07 55.1 6.2 34 183-216 178-211 (343)
116 COG0560 SerB Phosphoserine pho 95.7 0.037 8E-07 49.2 7.0 29 188-216 76-104 (212)
117 TIGR01686 FkbH FkbH-like domai 95.6 0.0089 1.9E-07 56.0 3.1 30 187-216 29-58 (320)
118 PF13344 Hydrolase_6: Haloacid 95.0 0.029 6.4E-07 44.0 3.7 29 188-216 13-41 (101)
119 TIGR02726 phenyl_P_delta pheny 95.0 0.025 5.5E-07 48.6 3.6 54 195-248 40-124 (169)
120 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.0 0.029 6.2E-07 50.2 4.1 29 188-216 23-51 (242)
121 TIGR01681 HAD-SF-IIIC HAD-supe 95.0 0.015 3.3E-07 47.3 2.1 28 189-216 29-57 (128)
122 TIGR01670 YrbI-phosphatas 3-de 94.9 0.024 5.2E-07 47.5 3.3 51 197-248 36-117 (154)
123 TIGR01512 ATPase-IB2_Cd heavy 94.6 0.023 4.9E-07 57.1 2.6 59 185-243 358-446 (536)
124 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.6 0.033 7.2E-07 49.8 3.4 58 191-249 140-241 (242)
125 TIGR02137 HSK-PSP phosphoserin 94.4 0.033 7.1E-07 49.1 3.1 80 188-270 67-190 (203)
126 TIGR01457 HAD-SF-IIA-hyp2 HAD- 94.4 0.047 1E-06 49.3 4.0 83 187-271 119-249 (249)
127 TIGR01544 HAD-SF-IE haloacid d 94.3 0.14 3.1E-06 47.5 7.2 30 187-216 119-148 (277)
128 TIGR01525 ATPase-IB_hvy heavy 94.3 0.033 7.2E-07 56.1 3.2 58 186-243 381-468 (556)
129 KOG3699 Cytoskeletal protein A 94.2 0.058 1.2E-06 54.5 4.6 79 2-81 93-210 (598)
130 PF12689 Acid_PPase: Acid Phos 93.9 0.11 2.3E-06 45.0 5.1 34 183-216 39-72 (169)
131 COG2179 Predicted hydrolase of 93.7 0.078 1.7E-06 45.9 3.8 60 190-249 47-138 (175)
132 PHA03398 viral phosphatase sup 93.6 0.063 1.4E-06 50.4 3.3 26 191-216 150-175 (303)
133 PF06888 Put_Phosphatase: Puta 93.6 0.15 3.3E-06 46.2 5.7 30 187-216 69-100 (234)
134 TIGR01684 viral_ppase viral ph 92.7 0.1 2.2E-06 49.1 3.3 64 153-216 99-173 (301)
135 COG3347 Uncharacterized conser 92.0 0.12 2.7E-06 49.8 3.0 60 20-80 110-199 (404)
136 PRK09484 3-deoxy-D-manno-octul 91.7 0.19 4.1E-06 43.2 3.6 51 196-246 55-136 (183)
137 TIGR01663 PNK-3'Pase polynucle 91.5 0.2 4.2E-06 50.6 3.9 27 190-216 198-224 (526)
138 TIGR02251 HIF-SF_euk Dullard-l 91.4 0.18 3.8E-06 42.8 3.0 31 185-216 38-68 (162)
139 COG0647 NagD Predicted sugar p 91.3 0.073 1.6E-06 49.3 0.6 45 164-216 7-51 (269)
140 KOG3040 Predicted sugar phosph 91.0 0.21 4.5E-06 45.0 3.1 40 169-216 11-50 (262)
141 PRK08238 hypothetical protein; 90.6 0.51 1.1E-05 47.1 5.8 60 189-249 72-165 (479)
142 PF08645 PNK3P: Polynucleotide 90.3 0.25 5.5E-06 41.9 2.9 26 190-215 30-55 (159)
143 TIGR02250 FCP1_euk FCP1-like p 89.8 0.3 6.5E-06 41.4 3.0 32 184-216 53-84 (156)
144 TIGR01511 ATPase-IB1_Cu copper 89.6 0.26 5.7E-06 49.9 3.0 58 187-244 403-488 (562)
145 COG5663 Uncharacterized conser 89.2 1.9 4E-05 37.7 7.4 63 193-256 76-169 (194)
146 PLN02645 phosphoglycolate phos 88.8 0.19 4.2E-06 46.9 1.2 39 232-270 255-302 (311)
147 PF00702 Hydrolase: haloacid d 88.6 0.35 7.5E-06 41.1 2.6 34 183-216 121-154 (215)
148 PF13242 Hydrolase_like: HAD-h 88.2 0.53 1.1E-05 34.4 3.0 39 232-271 29-75 (75)
149 PTZ00445 p36-lilke protein; Pr 88.1 1.2 2.6E-05 40.1 5.7 30 185-214 71-100 (219)
150 COG4996 Predicted phosphatase 87.4 0.51 1.1E-05 39.6 2.7 44 183-226 35-95 (164)
151 PLN02645 phosphoglycolate phos 87.0 0.73 1.6E-05 43.0 3.9 42 167-216 30-71 (311)
152 COG4359 Uncharacterized conser 86.9 1.7 3.7E-05 38.5 5.9 29 188-216 72-100 (220)
153 TIGR01458 HAD-SF-IIA-hyp3 HAD- 86.1 0.97 2.1E-05 41.0 4.1 27 190-216 22-48 (257)
154 TIGR01452 PGP_euk phosphoglyco 84.8 1.1 2.4E-05 40.9 3.9 29 188-216 17-45 (279)
155 PRK10671 copA copper exporting 84.2 1.2 2.5E-05 47.3 4.3 58 186-243 647-733 (834)
156 TIGR01533 lipo_e_P4 5'-nucleot 83.0 2 4.4E-05 39.6 4.8 39 176-216 107-145 (266)
157 KOG1615 Phosphoserine phosphat 81.3 2.7 5.9E-05 37.5 4.7 47 170-216 69-115 (227)
158 TIGR01457 HAD-SF-IIA-hyp2 HAD- 79.8 2.2 4.7E-05 38.4 3.8 27 189-215 17-43 (249)
159 PRK10444 UMP phosphatase; Prov 79.4 2.3 5.1E-05 38.5 3.9 28 189-216 17-44 (248)
160 smart00775 LNS2 LNS2 domain. T 78.1 0.82 1.8E-05 38.6 0.4 40 82-122 1-41 (157)
161 TIGR01460 HAD-SF-IIA Haloacid 73.4 4.5 9.7E-05 36.1 4.0 29 188-216 13-41 (236)
162 PF05152 DUF705: Protein of un 73.4 3.1 6.8E-05 39.0 3.0 27 190-216 143-169 (297)
163 PF12710 HAD: haloacid dehalog 72.3 2.7 5.9E-05 35.1 2.2 25 192-216 92-116 (192)
164 PRK13762 tRNA-modifying enzyme 72.2 12 0.00025 35.5 6.6 28 189-216 142-169 (322)
165 PF08235 LNS2: LNS2 (Lipin/Ned 67.4 3.5 7.7E-05 35.2 1.8 41 82-122 1-41 (157)
166 COG0731 Fe-S oxidoreductases [ 64.0 9 0.0002 36.1 4.0 34 183-216 86-120 (296)
167 KOG2882 p-Nitrophenyl phosphat 62.2 8.7 0.00019 36.3 3.5 44 165-216 22-65 (306)
168 PF05761 5_nucleotid: 5' nucle 62.1 6.3 0.00014 39.1 2.8 43 174-216 168-210 (448)
169 KOG4549 Magnesium-dependent ph 61.1 9.1 0.0002 32.0 3.0 30 187-216 42-71 (144)
170 COG3700 AphA Acid phosphatase 59.3 33 0.00071 30.5 6.3 84 176-260 101-225 (237)
171 TIGR03365 Bsubt_queE 7-cyano-7 57.2 9.8 0.00021 34.2 2.9 27 190-216 85-111 (238)
172 smart00775 LNS2 LNS2 domain. T 54.0 14 0.00031 31.0 3.3 28 189-216 27-54 (157)
173 TIGR01522 ATPase-IIA2_Ca golgi 53.7 12 0.00025 40.2 3.2 29 188-216 527-555 (884)
174 PRK00192 mannosyl-3-phosphogly 53.4 13 0.00027 33.7 3.0 28 189-216 21-48 (273)
175 PRK11033 zntA zinc/cadmium/mer 51.9 14 0.00031 38.8 3.4 31 186-216 565-595 (741)
176 TIGR02495 NrdG2 anaerobic ribo 49.3 20 0.00043 30.4 3.4 28 189-216 74-101 (191)
177 PRK10444 UMP phosphatase; Prov 47.9 13 0.00028 33.6 2.2 40 232-271 199-245 (248)
178 PF03031 NIF: NLI interacting 47.8 16 0.00034 30.1 2.5 32 184-216 31-62 (159)
179 smart00812 Alpha_L_fucos Alpha 47.7 50 0.0011 32.1 6.3 56 193-248 82-147 (384)
180 TIGR01675 plant-AP plant acid 47.2 18 0.0004 32.7 3.0 39 176-216 109-147 (229)
181 cd06589 GH31 The enzymes of gl 45.4 19 0.00042 32.6 2.9 32 185-216 59-90 (265)
182 COG0602 NrdG Organic radical a 45.2 22 0.00048 31.6 3.2 27 190-216 84-110 (212)
183 TIGR01456 CECR5 HAD-superfamil 45.2 17 0.00038 34.0 2.6 38 232-270 271-315 (321)
184 PF09419 PGP_phosphatase: Mito 44.3 22 0.00047 30.7 2.9 29 187-215 57-87 (168)
185 TIGR03470 HpnH hopanoid biosyn 44.2 23 0.0005 33.2 3.3 29 188-216 83-111 (318)
186 TIGR02826 RNR_activ_nrdG3 anae 43.9 16 0.00034 30.7 1.9 27 189-215 72-98 (147)
187 TIGR01689 EcbF-BcbF capsule bi 42.7 22 0.00047 29.2 2.5 29 188-216 23-51 (126)
188 TIGR02461 osmo_MPG_phos mannos 42.7 29 0.00063 30.7 3.6 28 189-216 15-42 (225)
189 TIGR01116 ATPase-IIA1_Ca sarco 41.5 25 0.00055 37.9 3.5 29 188-216 536-564 (917)
190 PRK12702 mannosyl-3-phosphogly 41.3 26 0.00057 33.1 3.1 28 189-216 18-45 (302)
191 COG4817 DNA-binding ferritin-l 40.2 13 0.00028 29.9 0.8 43 166-209 30-72 (111)
192 COG4087 Soluble P-type ATPase 40.0 21 0.00046 30.1 2.1 28 188-216 29-56 (152)
193 TIGR01487 SPP-like sucrose-pho 38.4 32 0.00068 29.7 3.0 28 189-216 18-45 (215)
194 PF05240 APOBEC_C: APOBEC-like 37.9 22 0.00048 25.2 1.6 21 192-212 2-22 (55)
195 TIGR02463 MPGP_rel mannosyl-3- 37.6 37 0.0008 29.3 3.3 26 191-216 18-43 (221)
196 TIGR01484 HAD-SF-IIB HAD-super 37.5 32 0.00069 29.2 2.9 28 189-216 17-44 (204)
197 TIGR01456 CECR5 HAD-superfamil 36.9 29 0.00062 32.5 2.7 29 188-216 15-47 (321)
198 PRK10076 pyruvate formate lyas 36.8 29 0.00063 30.8 2.6 27 190-216 51-78 (213)
199 PF03767 Acid_phosphat_B: HAD 36.8 38 0.00081 30.3 3.3 38 177-216 105-142 (229)
200 PLN03017 trehalose-phosphatase 36.7 15 0.00032 35.7 0.7 19 76-94 107-126 (366)
201 cd06600 GH31_MGAM-like This fa 36.5 37 0.0008 31.8 3.3 31 184-214 56-86 (317)
202 TIGR00099 Cof-subfamily Cof su 35.3 41 0.0009 29.7 3.4 28 189-216 16-43 (256)
203 cd06592 GH31_glucosidase_KIAA1 34.5 40 0.00087 31.3 3.2 31 186-216 64-94 (303)
204 TIGR02109 PQQ_syn_pqqE coenzym 34.3 46 0.00099 31.3 3.6 27 190-216 66-92 (358)
205 COG5083 SMP2 Uncharacterized p 33.8 32 0.00069 34.4 2.5 40 76-115 370-410 (580)
206 cd06602 GH31_MGAM_SI_GAA This 33.1 38 0.00083 32.1 2.9 35 180-214 52-88 (339)
207 PRK05301 pyrroloquinoline quin 32.6 44 0.00096 31.7 3.3 28 189-216 74-101 (378)
208 PLN02580 trehalose-phosphatase 32.2 19 0.00041 35.1 0.7 19 76-94 115-134 (384)
209 TIGR00190 thiC thiamine biosyn 31.8 36 0.00077 33.5 2.5 76 181-257 150-270 (423)
210 KOG2116 Protein involved in pl 31.5 1E+02 0.0022 32.4 5.7 47 71-117 518-567 (738)
211 TIGR01482 SPP-subfamily Sucros 31.4 50 0.0011 28.3 3.1 27 190-216 16-42 (225)
212 cd06604 GH31_glucosidase_II_Ma 31.3 51 0.0011 31.1 3.4 34 180-213 52-85 (339)
213 PF08282 Hydrolase_3: haloacid 31.0 46 0.001 28.3 2.8 27 190-216 16-42 (254)
214 PF11848 DUF3368: Domain of un 30.9 61 0.0013 21.8 2.8 26 178-208 10-35 (48)
215 PLN02151 trehalose-phosphatase 30.6 21 0.00046 34.4 0.7 19 76-94 94-113 (354)
216 PRK01158 phosphoglycolate phos 30.1 50 0.0011 28.5 2.9 27 190-216 21-47 (230)
217 cd06593 GH31_xylosidase_YicI Y 29.8 51 0.0011 30.4 3.1 28 186-213 60-87 (308)
218 cd06603 GH31_GANC_GANAB_alpha 29.2 58 0.0013 30.7 3.4 33 181-213 53-85 (339)
219 PF13779 DUF4175: Domain of un 29.0 1.7E+02 0.0036 31.6 7.0 90 83-173 458-564 (820)
220 PRK13352 thiamine biosynthesis 29.0 43 0.00094 33.1 2.5 75 182-257 154-273 (431)
221 PRK11145 pflA pyruvate formate 28.9 45 0.00097 29.6 2.5 27 190-216 83-110 (246)
222 cd06597 GH31_transferase_CtsY 28.4 66 0.0014 30.5 3.6 25 189-213 82-106 (340)
223 cd06601 GH31_lyase_GLase GLase 28.1 69 0.0015 30.4 3.7 35 179-213 51-85 (332)
224 TIGR00685 T6PP trehalose-phosp 27.7 26 0.00056 31.2 0.7 16 79-94 2-18 (244)
225 TIGR01460 HAD-SF-IIA Haloacid 27.4 47 0.001 29.5 2.4 19 232-250 214-235 (236)
226 KOG0361 Chaperonin complex com 26.9 58 0.0012 32.2 2.9 44 78-121 62-129 (543)
227 TIGR03278 methan_mark_10 putat 26.8 52 0.0011 32.3 2.7 34 183-216 80-114 (404)
228 PRK10530 pyridoxal phosphate ( 26.8 63 0.0014 28.5 3.1 28 189-216 20-47 (272)
229 PF01055 Glyco_hydro_31: Glyco 26.2 49 0.0011 32.1 2.4 40 177-216 68-107 (441)
230 PF10365 DUF2436: Domain of un 26.2 42 0.00091 28.4 1.6 24 66-89 24-50 (161)
231 COG0263 ProB Glutamate 5-kinas 26.0 37 0.0008 32.9 1.4 25 192-216 31-55 (369)
232 cd06594 GH31_glucosidase_YihQ 25.9 72 0.0016 29.9 3.4 32 185-216 64-95 (317)
233 cd05014 SIS_Kpsf KpsF-like pro 25.8 72 0.0016 24.8 2.9 26 191-216 60-85 (128)
234 TIGR02302 aProt_lowcomp conser 25.3 2.1E+02 0.0046 31.0 7.0 89 88-176 495-600 (851)
235 cd06595 GH31_xylosidase_XylS-l 25.1 79 0.0017 29.2 3.5 34 181-214 63-96 (292)
236 TIGR01680 Veg_Stor_Prot vegeta 24.7 77 0.0017 29.6 3.2 30 187-216 143-172 (275)
237 cd06591 GH31_xylosidase_XylS X 24.7 85 0.0018 29.4 3.6 29 185-213 59-87 (319)
238 COG3769 Predicted hydrolase (H 24.5 53 0.0012 30.1 2.1 24 193-216 27-50 (274)
239 cd06167 LabA_like LabA_like pr 24.3 87 0.0019 25.2 3.2 24 191-214 109-132 (149)
240 cd06416 GH25_Lys1-like Lys-1 i 24.1 78 0.0017 27.2 3.1 27 194-220 112-140 (196)
241 KOG2470 Similar to IMP-GMP spe 24.0 56 0.0012 31.9 2.3 25 192-216 243-267 (510)
242 PF05822 UMPH-1: Pyrimidine 5' 23.9 3.9E+02 0.0085 24.5 7.7 29 187-215 88-116 (246)
243 cd06599 GH31_glycosidase_Aec37 23.9 95 0.0021 29.0 3.8 31 185-215 66-96 (317)
244 TIGR01647 ATPase-IIIA_H plasma 23.7 67 0.0015 33.9 3.0 30 187-216 440-469 (755)
245 PRK03669 mannosyl-3-phosphogly 23.2 80 0.0017 28.4 3.0 27 190-216 25-51 (271)
246 cd06598 GH31_transferase_CtsZ 23.0 90 0.002 29.1 3.4 33 183-215 61-93 (317)
247 PF00390 malic: Malic enzyme, 22.8 45 0.00098 29.3 1.3 24 193-216 54-77 (182)
248 PRK15126 thiamin pyrimidine py 22.6 77 0.0017 28.3 2.8 27 190-216 20-46 (272)
249 PRK10658 putative alpha-glucos 22.5 88 0.0019 32.7 3.5 41 176-216 307-349 (665)
250 cd06414 GH25_LytC-like The Lyt 22.3 67 0.0015 27.6 2.3 25 192-216 113-137 (191)
251 TIGR02668 moaA_archaeal probab 22.2 94 0.002 28.4 3.3 29 188-216 67-96 (302)
252 PRK13402 gamma-glutamyl kinase 21.7 58 0.0013 31.5 1.9 31 186-216 24-54 (368)
253 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.7 94 0.002 24.1 2.8 25 191-215 59-83 (126)
254 cd04256 AAK_P5CS_ProBA AAK_P5C 21.6 90 0.0019 28.9 3.1 24 193-216 35-58 (284)
255 TIGR01494 ATPase_P-type ATPase 21.4 1E+02 0.0022 30.5 3.6 30 187-216 345-374 (499)
256 TIGR01517 ATPase-IIB_Ca plasma 21.2 90 0.0019 33.8 3.4 28 189-216 579-606 (941)
257 KOG2134 Polynucleotide kinase 21.0 62 0.0013 31.8 1.9 29 188-216 103-131 (422)
258 PRK10513 sugar phosphate phosp 20.8 97 0.0021 27.5 3.1 27 190-216 21-47 (270)
259 PLN03079 Uncharacterized prote 20.5 95 0.002 24.3 2.5 47 101-170 35-81 (91)
260 cd05017 SIS_PGI_PMI_1 The memb 20.4 1E+02 0.0022 24.1 2.8 25 191-215 56-80 (119)
261 TIGR02494 PFLE_PFLC glycyl-rad 20.4 75 0.0016 29.0 2.3 27 190-216 138-165 (295)
262 TIGR01657 P-ATPase-V P-type AT 20.3 95 0.0021 34.1 3.4 30 187-216 654-683 (1054)
263 TIGR02493 PFLA pyruvate format 20.2 82 0.0018 27.5 2.4 27 189-215 77-104 (235)
264 PF13394 Fer4_14: 4Fe-4S singl 20.1 31 0.00067 26.7 -0.3 25 192-216 65-91 (119)
No 1
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=100.00 E-value=1.8e-45 Score=315.22 Aligned_cols=169 Identities=30% Similarity=0.460 Sum_probs=151.8
Q ss_pred cceecccCcch-HHH--------HHHHHHHHHhhccCCcchHHHHHHHHHhhHHHhhcccCCCCCCCCCCCchHHHHHHH
Q 039859 82 VISRQLNGLTS-ASA--------DSNKVEKHLSATHETAGTKGDIKILQSQVEDDLKQGVAGAVPIPPSDAGKEEVIAAL 152 (271)
Q Consensus 82 vil~DiEGTt~-is~--------~~~~l~~~l~~~~~~~e~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
.||+||||||| ||| +++++++|+++||++++++.++++++.+. +... +. |++
T Consensus 6 aiLlDIEGTv~~iSFVkdvlFPYa~~~lp~fv~e~~e~~~v~~~v~~v~~e~--------------g~~~-s~----E~l 66 (229)
T COG4229 6 AILLDIEGTVSPISFVKDVLFPYAARKLPDFVRENTEDSEVKKIVDEVLSEF--------------GIAN-SE----EAL 66 (229)
T ss_pred hheeeccccccchhHHHhhhhHHHHHHhHHHHHhhccCChhhHHHHHHHHHh--------------Cccc-hH----HHH
Confidence 38999999999 996 99999999999999999999998888753 2211 12 556
Q ss_pred HHHHHHhhhhccchhhHHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC----------------
Q 039859 153 VANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS---------------- 216 (271)
Q Consensus 153 ~~~v~~~i~~DrK~~~LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---------------- 216 (271)
++.+..|+++|+|+|+||+|||+||.+||++|++++|+|||+.++|++|+++|+++|||||||+
T Consensus 67 va~~~~wiaed~K~t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~ 146 (229)
T COG4229 67 VALLLEWIAEDSKDTPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLN 146 (229)
T ss_pred HHHHHHHHhcccccchHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHH
Confidence 6666678999999999999999999999999999999999999999999999999999999999
Q ss_pred ----Cccc-------cccccc-----cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCC
Q 039859 217 ----TFIS-------LAASYF-----LS-KEI------DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFA 269 (271)
Q Consensus 217 ----~yFD-------~~~sy~-----l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~ 269 (271)
|||| |.+||. ++ +|. |++.|+ |+.+||+|.+++||||.|.++...+.++.||+
T Consensus 147 ~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 147 SLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred hhhcceeeccccccccchhHHHHHHhcCCCchheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 8999 889997 55 554 999999 99999999999999999998877899999997
No 2
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-43 Score=309.25 Aligned_cols=187 Identities=33% Similarity=0.458 Sum_probs=174.6
Q ss_pred cceecccCcch-HHH--------HHHHHHHHHhhccCCcchHHHHHHHHHhhHHHhhcccCCCCCCCCCCCchHHHHHHH
Q 039859 82 VISRQLNGLTS-ASA--------DSNKVEKHLSATHETAGTKGDIKILQSQVEDDLKQGVAGAVPIPPSDAGKEEVIAAL 152 (271)
Q Consensus 82 vil~DiEGTt~-is~--------~~~~l~~~l~~~~~~~e~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
++|+||||||| |+| |+.++++||+++|++++++++++++|++.+++. .++.+++||+.+.++.+..+.
T Consensus 10 ~~llDIegttt~isfVkd~LFpya~~nV~~~v~~~~~~~~~~~iv~~l~~~~~e~~-~~~~~~v~i~~~~~~~e~~v~-- 86 (254)
T KOG2630|consen 10 ELLLDIEGTTTSISFVKDVLFPYAKENVEELVQEPYETKIGQEIVSELRQRPEEQL-GSTNNIVPITDVTAAEEADVH-- 86 (254)
T ss_pred hheEeEEeeecchHHHHHhhhHHHHHHHHHHhcCccccchHHHHHHHHhhhHHHHh-ccccCcccccccchhhhhhhH--
Confidence 68999999999 996 999999999999999999999999999998888 778899999998888877777
Q ss_pred HHHHHHhhhhccchhhHHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC----------------
Q 039859 153 VANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS---------------- 216 (271)
Q Consensus 153 ~~~v~~~i~~DrK~~~LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---------------- 216 (271)
+++|+++++.|+|.|+||+|||+||++||++|++++++||||.+++++|+.+|+++|||||||+
T Consensus 87 v~~v~~~~~~d~k~t~~K~lQg~iw~~gy~sg~lk~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~ 166 (254)
T KOG2630|consen 87 VANVEKLISFDEKRTILKQLQGRIWAAGYESGELKAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLR 166 (254)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHhhcccccccccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----Cccc-------cccccc-----cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCC--ceeeCCCC
Q 039859 217 ----TFIS-------LAASYF-----LS-KEI------DVYFGL--IYRFGLDAIISVQPGNGPLPESRG--FKTINSFA 269 (271)
Q Consensus 217 ----~yFD-------~~~sy~-----l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~--~~~i~sf~ 269 (271)
+||| +.+||. |+ +|. |++.|+ |+.||+++.++.||||+|+++... +.++.||+
T Consensus 167 ~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~ 246 (254)
T KOG2630|consen 167 KYISGYFDTTIGLKVESQSYKKIGHLIGKSPREILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFE 246 (254)
T ss_pred HHhhhhhhccccceehhHHHHHHHHHhCCChhheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccch
Confidence 9999 889997 45 554 999999 999999999999999999987765 99999998
Q ss_pred CC
Q 039859 270 GI 271 (271)
Q Consensus 270 el 271 (271)
.|
T Consensus 247 ~l 248 (254)
T KOG2630|consen 247 IL 248 (254)
T ss_pred hh
Confidence 65
No 3
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=100.00 E-value=8.3e-39 Score=285.07 Aligned_cols=166 Identities=30% Similarity=0.465 Sum_probs=139.7
Q ss_pred cceecccCcch-HHH--------HHHHHHHHHhhccCCcchHHHHHHHHHhhHHHhhcccCCCCCCCCCCCchHHHHHHH
Q 039859 82 VISRQLNGLTS-ASA--------DSNKVEKHLSATHETAGTKGDIKILQSQVEDDLKQGVAGAVPIPPSDAGKEEVIAAL 152 (271)
Q Consensus 82 vil~DiEGTt~-is~--------~~~~l~~~l~~~~~~~e~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
.+||||||||| ||| ++++|++||++||+++ .++++++.. +.+.. +.+
T Consensus 3 ~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~----~~~~~~~~~--------------~~~~~------~~~ 58 (220)
T TIGR01691 3 NVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYEST----IVENLRELG--------------KTPEE------LIL 58 (220)
T ss_pred EEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCH----HHHHHHHhc--------------cCCcH------HHH
Confidence 58999999999 996 9999999999999987 455555421 11221 456
Q ss_pred HHHHHHhhhhccchhhHHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC----------------
Q 039859 153 VANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS---------------- 216 (271)
Q Consensus 153 ~~~v~~~i~~DrK~~~LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---------------- 216 (271)
+++|+.||++|||+|+||+|||++|+++|.+|.+++++||||.++|++|+++|++++|+||+++
T Consensus 59 ~~~~~~~~~~d~k~~~lk~lqg~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~ 138 (220)
T TIGR01691 59 LRKLHAEMDKDRKATPLKTLQGLIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT 138 (220)
T ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh
Confidence 7778889999999999999999999999999999999999999999999999999999999986
Q ss_pred ----Cccc-------cccccc-----cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCCCCCCC--CCceeeCCCC
Q 039859 217 ----TFIS-------LAASYF-----LS-KEI------DVYFGL--IYRFGLDAIISVQPGNGPLPES--RGFKTINSFA 269 (271)
Q Consensus 217 ----~yFD-------~~~sy~-----l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~~~~~~--~~~~~i~sf~ 269 (271)
+||| ++.+|. ++ +|+ |+..|+ |++|||+++++.|+||.++++. ..|++|+||+
T Consensus 139 ~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~ 218 (220)
T TIGR01691 139 PYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLN 218 (220)
T ss_pred hhcceEEEeCcccCCCHHHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCcc
Confidence 2344 555665 44 665 999999 9999999999999999866543 2499999998
Q ss_pred CC
Q 039859 270 GI 271 (271)
Q Consensus 270 el 271 (271)
++
T Consensus 219 ~~ 220 (220)
T TIGR01691 219 AV 220 (220)
T ss_pred cC
Confidence 75
No 4
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4.7e-20 Score=160.87 Aligned_cols=80 Identities=39% Similarity=0.611 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCCccCCCC----CCCCCCcc----cccccCCcEEEeccchHHHHHHHHHhCCceEEE-----------
Q 039859 1 MEPENTCVLSGDGTILSLPS----RKPYPHKP----TYETSNAGAGIHGHGIEYFLVTMINLMSKEFQI----------- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~----~~ps~~~~----iYr~~~agAVlHtHS~~at~~s~~~~~~~~~~~----------- 61 (271)
|+|||+||+|++++.++.|+ .+||..+| +|+.|+|+|||||||+.|+++|+++++ .+|++
T Consensus 64 m~peDlfv~~~~~~~~~~P~~~k~~k~s~CtpLF~~~y~~r~AgAvIHTHS~~Avl~t~L~~~-~~F~ith~EmIKgI~~ 142 (238)
T KOG2631|consen 64 MQPEDLFVMDLNTEYISVPKPSKKLKPSQCTPLFMAAYTMRDAGAVIHTHSQAAVLATLLFPS-DEFRITHQEMIKGIPK 142 (238)
T ss_pred CCccceEEEecCCceeccCCCcCCCCccccHHHHHHHHHhcCCceEEEeccHHHHHHHhhccc-ceeEeehHHHHhcCCC
Confidence 78999999999998888665 36778888 999999999999999999999999984 47887
Q ss_pred -----------------------------------eecCCccEEEeeCc---cccccc
Q 039859 62 -----------------------------------KAYPKTTAVLVPNH---VWRAGE 81 (271)
Q Consensus 62 -----------------------------------~~~p~~~avLir~H---~WG~~~ 81 (271)
+.||+++||||||| +||.+|
T Consensus 143 ~~~g~~~~y~D~L~vPIIeNt~~E~~L~D~l~~aie~YP~tcAVLVR~HGvyvWG~TW 200 (238)
T KOG2631|consen 143 GNSGGYLPYFDTLVVPIIENTPSESDLKDSLKKAIELYPDTCAVLVRRHGVYVWGPTW 200 (238)
T ss_pred CCCCccccccceEEEeeecCCchHHHHHHHHHHHHHhCCcceEEEEecCcEEEecCcH
Confidence 78999999999999 999996
No 5
>PRK06755 hypothetical protein; Validated
Probab=99.71 E-value=1.1e-17 Score=148.35 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=65.9
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccccCCcEEEeccchHHHHHHHHHhCC---------------c----
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYETSNAGAGIHGHGIEYFLVTMINLMS---------------K---- 57 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~~~agAVlHtHS~~at~~s~~~~~~---------------~---- 57 (271)
|+|+||++||++|+++..+..+||+|++ |||.++++|||||||++||++|+++... .
T Consensus 54 L~~eDiv~vd~~g~~~~~~~~kPSsE~~~H~~IY~~~~~~AVvHtHs~~at~ls~~~~~~~~i~~~~~e~~~~~g~~~~~ 133 (209)
T PRK06755 54 FSEEDFIVVNCMCEPVFENEEKPAAESFMHADIYKKSSAECILQVQTVDSHLISELYGEEGEVTFDKRSVERVFGKEGIT 133 (209)
T ss_pred CCcccEEEEeCCCCCccCCCCCcCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHhhccCCcccccchHHHHHhcccCCC
Confidence 6899999999999988433358999987 9998899999999999999999884110 1
Q ss_pred --eEEE----------------eecCCccEEEeeCc---ccccc
Q 039859 58 --EFQI----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 58 --~~~~----------------~~~p~~~avLir~H---~WG~~ 80 (271)
.+++ +..++.+||||+|| +||+|
T Consensus 134 ~~~IPiv~~~~~~~~~la~~~~~~~~~~~avLl~~HGv~~~G~~ 177 (209)
T PRK06755 134 EMTIPIVEDEKKFADLLENNVPNFIEGGGVVLVHNYGMIVWGKT 177 (209)
T ss_pred ceEEEEEeCCCchhHHHHHHHHhhccCCCEEEEcCCCeEEEcCC
Confidence 2444 45578899999999 99999
No 6
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=99.59 E-value=1.4e-15 Score=134.56 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=65.1
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccccCCcEEEeccchHHHHHHHHHhC-------C-------------
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYETSNAGAGIHGHGIEYFLVTMINLM-------S------------- 56 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~~~agAVlHtHS~~at~~s~~~~~-------~------------- 56 (271)
|+|+||++||++|++++++..+||+|++ +||.+|++|||||||+|+|++|++... .
T Consensus 54 l~~~div~vd~~g~~~~~~~~kPSsE~~lH~~iY~~pdv~aViHtH~~~at~~s~~~~~~~~~~~~~~e~~~~~~~~~~~ 133 (208)
T PRK06754 54 TTPEDFLLVDHDGKPVEETELKPSAETLLHTHIYNNTNAGCVLHVHTVDNNVISELYGDDGAVTFQGQEIIKALGIWEEN 133 (208)
T ss_pred CCHHHEEEEcCCCCCCCCCCCCCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHhhcCCCCeeeecChhhhhccCccccC
Confidence 6899999999999999865468999877 999999999999999999999977410 0
Q ss_pred --ceEEE---------------eec-CCccEEEeeCc---ccccc
Q 039859 57 --KEFQI---------------KAY-PKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 57 --~~~~~---------------~~~-p~~~avLir~H---~WG~~ 80 (271)
..+++ ++. ++.+|+||+|| +||+|
T Consensus 134 ~~~~vpv~~~~~~~~eLa~~v~~~l~~~~~avLl~nHG~v~~G~~ 178 (208)
T PRK06754 134 AEIHIPIIENHADIPTLAEEFAKHIQGDSGAVLIRNHGITVWGRD 178 (208)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHHhccCCcEEEECCCceEEEeCC
Confidence 01333 333 37899999999 99999
No 7
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=99.54 E-value=3.5e-15 Score=132.40 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=65.1
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC-----------CceEEE---
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM-----------SKEFQI--- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~-----------~~~~~~--- 61 (271)
|+|+||++||++|++++++ .+||+|++ |||. ||++||+|+||+|+|++|.+... +..+.+
T Consensus 52 l~~~div~vd~~g~~i~g~-~~ps~E~~lH~~iy~~rpdv~aVvH~H~~~a~a~s~~~~~lp~~~~~~~~~~~~i~~~~y 130 (214)
T PRK06833 52 IKPEDIVIMDLDGKVVEGE-RKPSSELDMHLIFYRNREDINAIVHTHSPYATTLACLGWELPAVHYLIAVAGPNVRCAEY 130 (214)
T ss_pred CCHHHEEEEcCCCCCcCCC-CCCCccHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHcCCCCCcchhHHHHHCCCeeeccC
Confidence 6899999999999999876 47888877 9995 69999999999999998876411 112333
Q ss_pred -------------eecCCccEEEeeCc---ccccc
Q 039859 62 -------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 -------------~~~p~~~avLir~H---~WG~~ 80 (271)
++.++.++|||+|| +||+|
T Consensus 131 ~~~gs~~la~~v~~~l~~~~~vll~nHGv~~~G~~ 165 (214)
T PRK06833 131 ATFGTKELAENAFEAMEDRRAVLLANHGLLAGANN 165 (214)
T ss_pred CCCChHHHHHHHHHHhCcCCEEEECCCCCEEEeCC
Confidence 44577899999999 99999
No 8
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=99.49 E-value=1e-14 Score=129.55 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=63.6
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC------------CceEEE--
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM------------SKEFQI-- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~------------~~~~~~-- 61 (271)
|+|+||++||++|+++++. +||+|++ |||. ||++||+||||+|+|++|.+... ...+.+
T Consensus 50 l~~~di~~vd~~G~~~~g~--~ps~E~~lH~~iy~~rpdv~aViH~H~~~~~a~s~~~~~ip~~~~~~~~~~~~~v~~~~ 127 (215)
T PRK08087 50 LTESHIVFVDGNGKHEEGK--LPSSEWRFHMAAYQTRPDANAVVHNHAVHCTAVSILNRPIPAIHYMIAAAGGNSIPCAP 127 (215)
T ss_pred CCHHHEEEECCCCCCCCCC--CCChhHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcCCCCCcHHHHHHHHcCCCceeec
Confidence 6899999999999999876 7888877 9995 69999999999999999876411 011332
Q ss_pred --------------eecCCccEEEeeCc---ccccc
Q 039859 62 --------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 --------------~~~p~~~avLir~H---~WG~~ 80 (271)
++..+.+++||+|| +||+|
T Consensus 128 y~~~gs~~la~~~~~~l~~~~~vLl~nHGv~~~G~~ 163 (215)
T PRK08087 128 YATFGTRELSEHVALALKNRKATLLQHHGLIACEVN 163 (215)
T ss_pred CCCCCCHHHHHHHHHHhCcCCEEEecCCCCEEEcCC
Confidence 44567799999999 99999
No 9
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=99.48 E-value=4.6e-14 Score=123.41 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=63.8
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC----------------C---
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM----------------S--- 56 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~----------------~--- 56 (271)
|+|+||++||++|++++++ .+||+|++ |||. ||++||+|+||+|+|++|.+... +
T Consensus 42 l~~~di~~v~~~g~~~~g~-~~ps~e~~~H~~iy~~~pdv~aVvH~H~~~a~a~s~~~~~~~~~~~~~~~~~~~~~g~~~ 120 (193)
T TIGR03328 42 LTPEDFLVVDLQGKPVSGG-LKPSAETLLHTQLYRLTPGAGAVLHTHSVEATVLSRLYPSNGAFELEGYEMLKALPGITT 120 (193)
T ss_pred CCcceEEEEcCCCCCCCCC-CCCCcHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHhhcccCCeeeccchhhhhhhCCCcC
Confidence 6899999999999999876 47888876 9996 69999999999999999976421 0
Q ss_pred --c--eEEE------------------eecCCccEEEeeCc---ccccc
Q 039859 57 --K--EFQI------------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 57 --~--~~~~------------------~~~p~~~avLir~H---~WG~~ 80 (271)
. .+++ +.+|+++++||+|| +||+|
T Consensus 121 ~~~~~~vp~~~~~~gs~ela~~~~~~l~~~~~~~avll~nHGv~~~G~~ 169 (193)
T TIGR03328 121 HEDKLTIPIFENTQDIARLADSVAPYLEAYPDVPGVLIRGHGLYAWGRD 169 (193)
T ss_pred CCCceEEeeecCCCChHHHHHHHHHHHhcCCCCCEEEEcCCcceEEcCC
Confidence 0 1222 22367899999999 99999
No 10
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=99.48 E-value=2.8e-14 Score=127.21 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=64.9
Q ss_pred CCCCceEEEeCCCCccCCC-CCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC------------CceEEE-
Q 039859 1 MEPENTCVLSGDGTILSLP-SRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM------------SKEFQI- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~-~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~------------~~~~~~- 61 (271)
|+|+||++||++|++++++ ..+||+|++ |||. +|++||+||||+++|++|..... +..+.+
T Consensus 52 l~~~Div~vd~~G~~i~~~~~~kPssE~~~H~~iY~~rpdv~aViHtH~~~a~a~s~~~~~l~~~~~~~~~~~~~~v~~~ 131 (217)
T PRK05874 52 MLLHDLVLVDAGGAVLHAKDGRSPSTELNLHLACYRAFDDIGSVIHSHPVWATMFAVAHEPIPACIDEFAIYCGGDVRCT 131 (217)
T ss_pred CCHHHEEEEcCCCCEecCCCCCCCchhHHHHHHHHHhCCCCCEEEECCcHHHHHHHHcCCCCCcchhHHHHHcCCceeee
Confidence 6899999999999999742 358998877 9995 69999999999999999876411 112443
Q ss_pred ---------------eecCCccEEEeeCc---ccccc
Q 039859 62 ---------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 ---------------~~~p~~~avLir~H---~WG~~ 80 (271)
++..+.++|||+|| +||+|
T Consensus 132 ~y~~~gs~ela~~v~~~l~~~~~vlL~nHGv~~~G~~ 168 (217)
T PRK05874 132 EYAASGTPEVGRNAVRALEGRAAALIANHGLVAVGPR 168 (217)
T ss_pred cCCCCCcHHHHHHHHHHhCcCCEEEEcCCCCeEecCC
Confidence 55567899999999 99999
No 11
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=99.47 E-value=4.2e-14 Score=127.03 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=46.7
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~ 53 (271)
|+|+||++||++|++++++ .+||+|++ |||. ||++||+||||+++|++|.+.
T Consensus 51 l~~~Div~vd~dG~~~~g~-~kPSsE~~~H~~IYr~rpdv~AVvHtHsp~ata~s~~~ 107 (231)
T PRK08193 51 MTAEDMVVVDLEGNVVEGK-LKPSSDTPTHLVLYKAFPEIGGIVHTHSRHATAWAQAG 107 (231)
T ss_pred CChHHEEEECCCCCCCCCC-CCcCccHHHHHHHHHhCCCCcEEEecCcHHHHHHHhcC
Confidence 6899999999999999976 58998876 9995 699999999999999998864
No 12
>PRK07490 hypothetical protein; Provisional
Probab=99.45 E-value=5.9e-14 Score=127.18 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=62.7
Q ss_pred CCCCceEEEeCCC-CccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC-C-----------ceEEE-
Q 039859 1 MEPENTCVLSGDG-TILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM-S-----------KEFQI- 61 (271)
Q Consensus 1 l~peD~~vvD~~G-~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~-~-----------~~~~~- 61 (271)
|+|+||++||++| ++++++..+||+|++ |||. ||++||+||||+|+|++|.+... - ..+.+
T Consensus 58 l~~~div~vd~dg~~~~~g~~~~psse~~lH~~iYr~rpdv~aVvHtH~~~ata~s~~~~~~lp~~~~~~~~~~g~v~~~ 137 (245)
T PRK07490 58 IRASDLLLLDADDPSTAERPDVPDATAWAIHGQIHRRLPHARCVMHVHSVYATALACLADPTLPPIDQNTARFFNRVAVD 137 (245)
T ss_pred CcHHHeEEEcCCCCcccCCCCCCCcHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHhcCCCCCCccHHHHHHcCCeeec
Confidence 6899999999999 567766444677765 9996 69999999999999999887421 0 11222
Q ss_pred ----------------eecCCccEEEeeCc---ccccc
Q 039859 62 ----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 ----------------~~~p~~~avLir~H---~WG~~ 80 (271)
+...+.+++||+|| +||+|
T Consensus 138 ~~y~~~~~~ela~~v~~~l~~~~avlL~nHG~v~~G~~ 175 (245)
T PRK07490 138 TLYGGMALEEEGERLAGLLGDKRRLLMGNHGVLVTGDT 175 (245)
T ss_pred cCCCCcCcHHHHHHHHHHhCcCCEEEECCCCcEEecCC
Confidence 34467899999999 99999
No 13
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=99.44 E-value=1.2e-13 Score=121.81 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=63.2
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHh-C------------CceEEE-
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINL-M------------SKEFQI- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~-~------------~~~~~~- 61 (271)
|+|+||++||++|+++++. +||+|++ |||. ||++||+||||+|+|++|.... . ...+.+
T Consensus 49 l~~~dlv~vd~~g~~~~g~--~ps~E~~lH~~iy~~rpdv~aViHtH~~~~~a~s~~~~~~~p~~~~~~~~~~~~~ip~~ 126 (209)
T cd00398 49 MTASDLVVVDAQGKVVEGK--KPSSETPLHLALYRARPDIGCIVHTHSTHATAVSQLKEGLIPAGHTACAVYFTGDIPCT 126 (209)
T ss_pred CCHhhEEEEcCCCCCcCCC--CCCccHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHhCCCCCCcchHHHHHHcCCCeeec
Confidence 6899999999999999853 7888877 9996 6999999999999999986542 0 112333
Q ss_pred -----------------eecCCccEEEeeCc---ccccc
Q 039859 62 -----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 -----------------~~~p~~~avLir~H---~WG~~ 80 (271)
+..++.+++||+|| +||+|
T Consensus 127 ~~~~~~~~~~~la~~~~~~l~~~~~vll~nHG~~~~G~~ 165 (209)
T cd00398 127 PYMTPETGEDEIGTQRALGFPNSKAVLLRNHGLFAWGPT 165 (209)
T ss_pred CCcCCCccHHHHHHHHhcCCCcCCEEEEcCCCCeEecCC
Confidence 23468899999999 99999
No 14
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=99.44 E-value=5.7e-14 Score=121.49 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=63.3
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccccCCcEEEeccchHHHHHHHHHhC-----------CceEEE----
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYETSNAGAGIHGHGIEYFLVTMINLM-----------SKEFQI---- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~~~agAVlHtHS~~at~~s~~~~~-----------~~~~~~---- 61 (271)
|+|+||++||++|+... + .+||+|++ |||++|++||+|+||+|+|++|..... ...+++
T Consensus 45 l~~~dlv~vd~~g~~~~-~-~~ps~E~~lH~~iy~~~dv~aVvH~H~~~~~a~s~~~~~l~~~~~~~~~~~~~ipv~~~~ 122 (181)
T PRK08660 45 ITEGDVIEVGIDDDGSV-D-PLASSETPVHRAIYRRTSAKAIVHAHPPYAVALSLLEDEIVPLDSEGLYFLGTIPVVGGD 122 (181)
T ss_pred CChhHEEEEcCCCCccC-C-CCCCccHHHHHHHHcCCCCCEEEEeCChHHHHHHHcCCCCCCcCHHHHHhcCCEeEEeCC
Confidence 68999999999999763 3 48999887 999889999999999999999976410 012333
Q ss_pred -----------eecCCccEEEeeCc---ccccc
Q 039859 62 -----------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 -----------~~~p~~~avLir~H---~WG~~ 80 (271)
++..+.+++||+|| +||+|
T Consensus 123 ~~~~~la~~v~~~l~~~~~vll~nHG~~~~G~~ 155 (181)
T PRK08660 123 IGSGELAENVARALSEHKGVVVRGHGTFAIGKT 155 (181)
T ss_pred CCCHHHHHHHHHHHhhCCEEEEcCCCceEeCCC
Confidence 44567799999999 99999
No 15
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=99.44 E-value=9.3e-14 Score=120.45 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHH-H---h----C----CceEEE--
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMI-N---L----M----SKEFQI-- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~-~---~----~----~~~~~~-- 61 (271)
|+|+|++++|++|+++++. +||+|++ |||. ||++||+|+||+++|++|.+ . + . ...+++
T Consensus 48 l~~~di~~vd~~g~~~~g~--~Ps~e~~lH~~iyr~rpdv~aViHtH~~~a~a~s~~~~~~~p~~~~~~~~~~~~v~v~~ 125 (184)
T PRK08333 48 LTREQVAVIDLNGNQLSSV--RPSSEYRLHLAVYRNRPDVRAIAHLHPPYSIVASTLLEEELPIITPEAELYLKKIPILP 125 (184)
T ss_pred CCHHHEEEECCCCCCCCCC--CCChhHHHHHHHHHhCCCCCEEEeCCcHHHHHHHHHcCCCCCCccHHHHHhCCCEeeec
Confidence 6899999999999999864 7888776 9996 69999999999999999932 1 0 0 012443
Q ss_pred --------------eecCCccEEEeeCc---ccccc
Q 039859 62 --------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 --------------~~~p~~~avLir~H---~WG~~ 80 (271)
++..+.+++|++|| +||+|
T Consensus 126 ~~~~g~~~la~~~~~~l~~~~~vll~nHGv~~~G~~ 161 (184)
T PRK08333 126 FRPAGSVELAEQVAEAMKEYDAVIMERHGIVTVGRS 161 (184)
T ss_pred CCCCCcHHHHHHHHHHhccCCEEEEcCCCCEEEcCC
Confidence 44466799999999 99999
No 16
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.43 E-value=6.6e-13 Score=115.10 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=69.6
Q ss_pred HHHHhhh-cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc--
Q 039859 176 IWRTGFE-SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF-- 226 (271)
Q Consensus 176 iw~~~y~-~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~-- 226 (271)
.|.+.|. ...-...+|||+.++|+.|+++|++++|+||++. +||| .+..|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~ 150 (213)
T TIGR01449 71 LFDRHYEEVAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLA 150 (213)
T ss_pred HHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHH
Confidence 4555666 3333578999999999999999999999999976 6787 111222
Q ss_pred ---cC-CCC------CCHHHH--HHHhCCeEEEEeCC-CCC-CCCCCCCceeeCCCCCC
Q 039859 227 ---LS-KEI------DVYFGL--IYRFGLDAIISVQP-GNG-PLPESRGFKTINSFAGI 271 (271)
Q Consensus 227 ---l~-~p~------D~~~d~--A~~AG~~t~~v~R~-gn~-~~~~~~~~~~i~sf~el 271 (271)
++ +|+ |+..|+ |++||++++++.|. ++. ++....+..+++++.+|
T Consensus 151 ~~~~~~~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 151 AERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred HHHcCCChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 33 554 999999 99999999999883 222 33333467788887653
No 17
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=99.43 E-value=8.6e-14 Score=123.93 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=64.8
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC------------CceEEE--
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM------------SKEFQI-- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~------------~~~~~~-- 61 (271)
|+++||++||++|++++++ .+||+|+. |||. ||++||+||||+++|+++.+... ...+.+
T Consensus 57 l~~~div~vd~~G~~~~g~-~~ps~E~~lH~~iy~~~pdv~aVvH~H~~~~~a~a~~~~~~p~~~~~~~~~~~~~ip~~~ 135 (221)
T PRK06557 57 LTPEDMVVVDLDGNVVEGD-LKPSSDTASHLYVYRHMPDVGGVVHTHSTYATAWAARGEPIPCVLTAMADEFGGPIPVGP 135 (221)
T ss_pred CCHHHEEEEcCCCCCcCCC-CCCCccHHHHHHHHHhCCCCCEEEeeCcHHHHHHHHhCCCCChhHHHHHHHhCCCeeccC
Confidence 6899999999999999875 47888876 9995 79999999999999998875310 123443
Q ss_pred --------------eec--CCccEEEeeCc---ccccc
Q 039859 62 --------------KAY--PKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 --------------~~~--p~~~avLir~H---~WG~~ 80 (271)
+.. ++.+++||+|| +||+|
T Consensus 136 y~~~g~~ela~~i~~~l~~~~~~~vll~nHG~~~~G~~ 173 (221)
T PRK06557 136 FALIGDEAIGKGIVETLKGGRSPAVLMQNHGVFTIGKD 173 (221)
T ss_pred CcCCCcHHHHHHHHHHhCcCCCCEEEECCCCceEEcCC
Confidence 444 78899999999 99999
No 18
>PRK06357 hypothetical protein; Provisional
Probab=99.43 E-value=8e-14 Score=124.18 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=45.2
Q ss_pred CCCCceEEEe-CCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHH
Q 039859 1 MEPENTCVLS-GDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMI 52 (271)
Q Consensus 1 l~peD~~vvD-~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~ 52 (271)
|+|+||++|| .+|++++++ .+||+|++ |||. ||++||+||||+|+|+++..
T Consensus 58 lt~~Div~vd~~~g~~~~g~-~kPSsE~~lH~~IY~~rpdv~aVvH~H~~~ata~a~~ 114 (216)
T PRK06357 58 LSPYQILVVDLNTGEVIEGV-GRVTREINMHEAAYVANPKIKCVYHSHAKESMFWATL 114 (216)
T ss_pred CCHHHEEEEecCCCeEcCCC-CCCChhHHHHHHHHHhCCCCCEEEecCcHHHHHHHHc
Confidence 6899999999 589999876 48998877 9995 79999999999999998765
No 19
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=99.43 E-value=6.4e-14 Score=124.32 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=62.4
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC------------CceEEE--
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM------------SKEFQI-- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~------------~~~~~~-- 61 (271)
|+|+||++||++|+++++. +||+|++ +|+. |+++||||+||+++++++.+... ++.+.+
T Consensus 49 l~~~div~vd~~G~~~~g~--kpsse~~~H~~iy~~rpdv~avvH~H~~~~~~~~~~~~~lp~~~~~~~~~~~~~i~~v~ 126 (214)
T TIGR01086 49 KLTESIVYVIDGGGKEEEK--LPSSEWWFHLMAYYQRRPDNAVVHNHHIVCATASILLKRIPAIHYMVAASGGGNIPCVP 126 (214)
T ss_pred CCHHHEEEEcCCCCCCCCC--CCChhHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHcCCCCCcchHHHHHhcCCCccccC
Confidence 6899999999999999874 8988876 8985 79999999999999998866411 111332
Q ss_pred --------------eecCCccEEEeeCc---ccccc
Q 039859 62 --------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 --------------~~~p~~~avLir~H---~WG~~ 80 (271)
+...+.++|||+|| +||+|
T Consensus 127 y~~~gs~~la~~v~~~~~~~~~vLL~nHG~~~~G~~ 162 (214)
T TIGR01086 127 YATFGSTKLASEVVAGILKSKAILLLHHGLIIACEN 162 (214)
T ss_pred CCCCChHHHHHHHHHHhhhCCEEehhcCCCEEecCC
Confidence 33345789999999 99999
No 20
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.42 E-value=4.4e-13 Score=117.12 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=68.9
Q ss_pred HHHHhhh-cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc--
Q 039859 176 IWRTGFE-SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF-- 226 (271)
Q Consensus 176 iw~~~y~-~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~-- 226 (271)
.|++.|. .......+|||+.++|+.|+++|++++|+||++. .||+ .+..|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~ 147 (214)
T PRK13288 68 TYREFNHEHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKA 147 (214)
T ss_pred HHHHHHHHhhhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHH
Confidence 3555555 3334578999999999999999999999999977 7787 112222
Q ss_pred ---cC-CCC------CCHHHH--HHHhCCeEEEEeCCC-CC-CCCCCCCceeeCCCCCC
Q 039859 227 ---LS-KEI------DVYFGL--IYRFGLDAIISVQPG-NG-PLPESRGFKTINSFAGI 271 (271)
Q Consensus 227 ---l~-~p~------D~~~d~--A~~AG~~t~~v~R~g-n~-~~~~~~~~~~i~sf~el 271 (271)
++ +|+ |++.|+ |++||+++++|.|.. +. .+....+..+++++.|+
T Consensus 148 ~~~~~~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l 206 (214)
T PRK13288 148 LELLGAKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDL 206 (214)
T ss_pred HHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHH
Confidence 33 554 999999 999999999999842 22 22223456678887653
No 21
>PRK08130 putative aldolase; Validated
Probab=99.42 E-value=9.3e-14 Score=123.15 Aligned_cols=78 Identities=26% Similarity=0.431 Sum_probs=63.5
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHh--------C-C-------ceE
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINL--------M-S-------KEF 59 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~--------~-~-------~~~ 59 (271)
|+|+||++||++|+++++. +||+|++ |||. +|++||+||||+|+|++|.+.. . . +.+
T Consensus 51 l~~~div~vd~~g~~~~g~--~ps~E~~~H~~iy~~rpdv~avvH~H~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~g~i 128 (213)
T PRK08130 51 LDPARLSKVDADGNWLSGD--KPSKEVPLHRAIYRNNPECGAVVHLHSTHLTALSCLGGLDPTNVLPPFTPYYVMRVGHV 128 (213)
T ss_pred CCHhHEEEECCCCCCCCCC--CCChhHHHHHHHHHhCCCCCEEEECCcHHHHHHHhcCccccccCCCCCChhhhhccCcc
Confidence 6899999999999999865 7888877 9996 6999999999999999998631 0 0 012
Q ss_pred EE----------------eecCCccEEEeeCc---ccccc
Q 039859 60 QI----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 60 ~~----------------~~~p~~~avLir~H---~WG~~ 80 (271)
.+ ++..+..++||+|| +||+|
T Consensus 129 ~v~~y~~~g~~~la~~~~~~l~~~~~vll~nHGvi~~G~s 168 (213)
T PRK08130 129 PLIPYYRPGDPAIAEALAGLAARYRAVLLANHGPVVWGSS 168 (213)
T ss_pred ceECCCCCChHHHHHHHHHHhccCCEEEEcCCCCeeeCCC
Confidence 22 44577899999999 99999
No 22
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.42 E-value=6.6e-13 Score=117.53 Aligned_cols=85 Identities=21% Similarity=0.172 Sum_probs=66.3
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-----------cccccc-------cC-CCC---
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-----------LAASYF-------LS-KEI--- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-----------~~~sy~-------l~-~p~--- 231 (271)
.+.+|||+.++|++|+++|++++|+||++. .||+ .|.+.. ++ .|+
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 478999999999999999999999999988 8887 111111 23 554
Q ss_pred ---CCHHHH--HHHhCCeEEEEeCCCC-C-CCCCCCCceeeCCCCCC
Q 039859 232 ---DVYFGL--IYRFGLDAIISVQPGN-G-PLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ---D~~~d~--A~~AG~~t~~v~R~gn-~-~~~~~~~~~~i~sf~el 271 (271)
|+..|+ |++||+.+++|.|..+ . ++....++.+++++.||
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el 213 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAEL 213 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHH
Confidence 999999 9999999999999543 2 34445578898888764
No 23
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.42 E-value=1.1e-12 Score=119.52 Aligned_cols=172 Identities=10% Similarity=-0.006 Sum_probs=99.0
Q ss_pred EeeCccccccc-cceecccCcch-H-H-HHHHHHHHHHhhccCCcchHHHHHHHHHhhHHHhhcccCCCCCCCCCCCchH
Q 039859 71 LVPNHVWRAGE-VISRQLNGLTS-A-S-ADSNKVEKHLSATHETAGTKGDIKILQSQVEDDLKQGVAGAVPIPPSDAGKE 146 (271)
Q Consensus 71 Lir~H~WG~~~-vil~DiEGTt~-i-s-~~~~~l~~~l~~~~~~~e~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (271)
|+|.|-.|+++ .++||+|||+. . . +....+..++++.--.......+ +.. +|.+..
T Consensus 14 ~~~~~~~~~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~---~~~--------------~G~~~~--- 73 (260)
T PLN03243 14 LLRQHRLGCGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLL---KRA--------------EGMKNE--- 73 (260)
T ss_pred HHHHHHhcCCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHH---HHh--------------cCCCHH---
Confidence 67888888888 68999999999 5 3 33444445544322111111111 110 133221
Q ss_pred HHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHhhh-cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC---------
Q 039859 147 EVIAALVANVDAMIKADRKITALKQLQGHIWRTGFE-SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS--------- 216 (271)
Q Consensus 147 ~~~~~~~~~v~~~i~~DrK~~~LK~LQG~iw~~~y~-~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------- 216 (271)
+.+.. ++..+.....++.++- .++..|. ...-...+|||+.++|+.|+++|++++|+||++.
T Consensus 74 ---~~~~~----l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~ 145 (260)
T PLN03243 74 ---QAISE----VLCWSRDFLQMKRLAI-RKEDLYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEA 145 (260)
T ss_pred ---HHHHH----HhccCCCHHHHHHHHH-HHHHHHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHH
Confidence 11111 1111111111233332 2444443 1122467899999999999999999999999987
Q ss_pred ----Cccc-------------cccccc-----cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceee
Q 039859 217 ----TFIS-------------LAASYF-----LS-KEI------DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTI 265 (271)
Q Consensus 217 ----~yFD-------------~~~sy~-----l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i 265 (271)
+||| ++..|. ++ .|+ |+..|+ |++|||+++++...+... ....+..++
T Consensus 146 ~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g~~~~~-~l~~ad~vi 224 (260)
T PLN03243 146 VGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAGKHPVY-ELSAGDLVV 224 (260)
T ss_pred cCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHcCCEEEEEecCCchh-hhccCCEEe
Confidence 7888 112222 33 554 999999 999999999886332221 112346678
Q ss_pred CCCCCC
Q 039859 266 NSFAGI 271 (271)
Q Consensus 266 ~sf~el 271 (271)
.++.+|
T Consensus 225 ~~~~el 230 (260)
T PLN03243 225 RRLDDL 230 (260)
T ss_pred CCHHHH
Confidence 887654
No 24
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=99.41 E-value=2.3e-13 Score=120.13 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=45.9
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~ 53 (271)
|+|+||++||++|++++++ .+||+|+. |||. +|++||+||||+++|++|++.
T Consensus 51 l~~~di~~vd~~g~~~~~~-~~Ps~E~~lH~~iy~~rpdv~aViH~H~~~~~a~s~~~ 107 (204)
T PRK09220 51 LTAEDFLQVDIAGNAVPSG-RKPSAETLLHTQLYRLFPEIGAVLHTHSVNATVLSRVE 107 (204)
T ss_pred CChhhEEEEcCCCCCCCCC-CCcChhHHHHHHHHHhCCCCcEEEecCcHHHHHHHhhc
Confidence 6899999999999999865 47888876 9995 699999999999999999753
No 25
>PRK05834 hypothetical protein; Provisional
Probab=99.41 E-value=1.4e-13 Score=120.77 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=59.9
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhC-----------CceEEE---
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLM-----------SKEFQI--- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~-----------~~~~~~--- 61 (271)
|+|+||++| ++|+..++. +||+|++ |||. +|++||+||||+|+|++|++... .+++++
T Consensus 51 l~~ediv~v-~~g~~~~~~--kPSsE~~~H~~IY~~rpdv~AVvHtHs~~ata~s~~~~~i~~~~~~~~~~~g~ipv~~~ 127 (194)
T PRK05834 51 LDENSLIVL-YDKKDYRWK--EASIDSPIHASIYKNISEAKFIAYAMPPYTTAYSLRHNKILPRDYFGYRSLGEISIYDP 127 (194)
T ss_pred CCHHHeEEE-eCCCccCCC--CCCccHHHHHHHHhcCCCCCEEEEeCCHHHHHHHhcCCCcCccChhHHhhCCeeeecCc
Confidence 689999999 999887643 8998877 9996 69999999999999999987410 012343
Q ss_pred ---------------eecCC--ccEEEeeCc---ccccc
Q 039859 62 ---------------KAYPK--TTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 ---------------~~~p~--~~avLir~H---~WG~~ 80 (271)
++..+ .+|+||+|| +||+|
T Consensus 128 ~~~~~~~~~la~~v~~~l~~~~~~avLL~nHGvv~~G~~ 166 (194)
T PRK05834 128 KDFDDWYERADTEILRYLQEKNKNFVVIKGYGVYAYARD 166 (194)
T ss_pred cccchHHHhHHHHHHHHHhhcCCCEEEEcCCcceEECCC
Confidence 12233 349999999 99999
No 26
>PRK06661 hypothetical protein; Provisional
Probab=99.41 E-value=1.1e-13 Score=124.47 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCCCceEEEeCCCCccCCCCC-CCCCC----cccccc-cCCcEEEeccchHHHHHHHHHhCC-----------ceEEE--
Q 039859 1 MEPENTCVLSGDGTILSLPSR-KPYPH----KPTYET-SNAGAGIHGHGIEYFLVTMINLMS-----------KEFQI-- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~-~ps~~----~~iYr~-~~agAVlHtHS~~at~~s~~~~~~-----------~~~~~-- 61 (271)
|+|+||++||++|++++++.. .|+++ ..|||. ||++||+|+||+|+|++|.+..+. ..+.+
T Consensus 49 l~~~div~vd~dG~~~~g~~~~~~sse~~lH~~IY~~rpdv~aVvH~H~~~a~a~s~~~~~~~p~~~~~~~~~~~i~~~~ 128 (231)
T PRK06661 49 VTTENLLKVSLDGQILEGEEYQYNKTGYFIHGSIYKTRPDISAIFHYHTPASIAVSALKCGLLPISQWALHFYDRISYHN 128 (231)
T ss_pred CcHHHeEEECCCCCCcCCCCCCCChhHHHHHHHHHHcCCCCCEEEEECChHHHHHHhcCCCCCCccHhHHHHcCCceecC
Confidence 689999999999999987532 24444 449995 699999999999999999874210 11221
Q ss_pred ----------------eecCCccEEEeeCc---ccccc
Q 039859 62 ----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 ----------------~~~p~~~avLir~H---~WG~~ 80 (271)
++..+.+++||+|| +||+|
T Consensus 129 ~~~~~~~~~~~~~~~a~~l~~~~avll~nHG~v~~G~s 166 (231)
T PRK06661 129 YNSLALDADKQSSRLVNDLKQNYVMLLRNHGAITCGKT 166 (231)
T ss_pred CCccccCchhHHHHHHHHhCCCCEEEECCCCCeEecCC
Confidence 34467899999999 99999
No 27
>PRK13213 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=99.40 E-value=1.9e-13 Score=123.05 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=46.6
Q ss_pred CCCCceEEEeCC-CCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSGD-GTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~~-G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~ 53 (271)
|+|+||++||++ |++++++ .+||+|++ |||. +|++|||||||+|+|+++...
T Consensus 51 l~~~div~vd~~~g~~~~g~-~kPSsE~~lH~~iY~~rpdv~AViHtHs~~at~~a~~~ 108 (231)
T PRK13213 51 MSVNDMVVVDLATGKVVEGD-KKPSSDTDTHLVLYRAFAEIGGIVHTHSRHATIWAQAG 108 (231)
T ss_pred CCHHHEEEEEcCCCCCcCCC-CCcCccHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHcC
Confidence 689999999995 9999987 58999887 9995 699999999999999988764
No 28
>PRK06486 hypothetical protein; Provisional
Probab=99.40 E-value=1.2e-13 Score=126.32 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=60.9
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCC-C----cccccc-cCCcEEEeccchHHHHHHHHHh-C-----------CceEEE-
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYP-H----KPTYET-SNAGAGIHGHGIEYFLVTMINL-M-----------SKEFQI- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~-~----~~iYr~-~~agAVlHtHS~~at~~s~~~~-~-----------~~~~~~- 61 (271)
|+|+||++||++|++++++ .+||+ + ..|||. +|++|||||||+|+|++|++.. . ...+.+
T Consensus 74 lt~eDlv~vd~dG~~veg~-~kPs~~e~~lH~~IYr~rpDv~aVvHtHs~~a~a~s~~~~~~l~~~~~~~~~~~g~i~~~ 152 (262)
T PRK06486 74 ITASDLLICDFDGNVLAGR-GEPEATAFFIHARIHRAIPRAKAAFHTHMPYATALSLTEGRPLTTLGQTALKFYGRTAVD 152 (262)
T ss_pred CcHHHeEEECCCCCCcCCC-CCCChhHHHHHHHHHHhCCCCCEEEEeCChHHhhhhhcCCCCCCcccHHHHHHCCCeeec
Confidence 6899999999999999876 36763 3 349996 6999999999999999998731 0 011221
Q ss_pred -----------------eecCCccEEEeeCc---ccccc
Q 039859 62 -----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 -----------------~~~p~~~avLir~H---~WG~~ 80 (271)
++..+.+++||+|| +||+|
T Consensus 153 ~~~~~~~~s~ela~~va~al~~~~avLL~nHG~v~~G~~ 191 (262)
T PRK06486 153 EDYNGLALDAAEGDRIARAMGDADIVFLKNHGVMVCGPR 191 (262)
T ss_pred cCCCCccCchhHHHHHHHHhCcCCEEEECCCCCeEecCC
Confidence 22345789999999 99999
No 29
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=2.1e-12 Score=116.25 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=65.3
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------c-------ccccc-----cC-CCC--
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------L-------AASYF-----LS-KEI-- 231 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~-------~~sy~-----l~-~p~-- 231 (271)
...++|||+.++|++|+++|++++|+||++. .||| + +..|. ++ .|+
T Consensus 105 ~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 184 (248)
T PLN02770 105 EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHT 184 (248)
T ss_pred hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHE
Confidence 3568999999999999999999999999987 7888 1 11222 33 555
Q ss_pred ----CCHHHH--HHHhCCeEEEEeCCCCC-CCCCCCCceeeCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQPGNG-PLPESRGFKTINSFAG 270 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R~gn~-~~~~~~~~~~i~sf~e 270 (271)
|+..|+ |++||++++++.+.... .+....++.+++++.|
T Consensus 185 l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e 230 (248)
T PLN02770 185 FVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYED 230 (248)
T ss_pred EEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchh
Confidence 999999 99999999999874322 2223346788888876
No 30
>PRK12348 sgaE L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=99.40 E-value=1.7e-13 Score=123.00 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=46.6
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~ 53 (271)
|+|+||++||++|++++++ .+||+|++ |||. +|++|||||||+|+|+++.+.
T Consensus 50 l~~~dlv~vd~dG~~ieg~-~kpssE~~lH~~IYr~rpdv~aVvHtH~p~ata~a~~~ 106 (228)
T PRK12348 50 MKADDMVVVDMSGKVVEGE-YRPSSDTATHLELYRRYPSLGGIVHTHSTHATAWAQAG 106 (228)
T ss_pred CCHHHEEEECCCCCCCCCC-CCCCccHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcC
Confidence 6899999999999999976 58998877 9996 699999999999999988764
No 31
>PRK12347 sgbE L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=99.39 E-value=3.3e-13 Score=121.39 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=46.2
Q ss_pred CCCCceEEEeC-CCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSG-DGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~-~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~ 53 (271)
|+|+||+++|+ +|++++++ .+||+|++ |||. +|++||+||||+|+|+++.+.
T Consensus 51 l~~~div~vd~~~G~~i~g~-~kpS~E~~lH~~iYr~rpdv~aViHtHs~~ata~a~~~ 108 (231)
T PRK12347 51 MTADDMVVVEIASGKVVEGS-KKPSSDTPTHLALYRRYPEIGGIVHTHSRHATIWSQAG 108 (231)
T ss_pred CCHHHEEEEEcCCCcCCCCC-CCcCccHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcC
Confidence 68999999999 99999876 47888877 9995 699999999999999988763
No 32
>PRK07090 class II aldolase/adducin domain protein; Provisional
Probab=99.39 E-value=2.4e-13 Score=124.33 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=63.7
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHHhCCc-------eE---------
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMINLMSK-------EF--------- 59 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~~~~~-------~~--------- 59 (271)
|+|+||++||++|+++++. .+||+|.+ |||. ||++||+||||+|+|++|.+...-. .+
T Consensus 77 lt~~Div~vd~dG~~v~G~-~kPs~E~~lH~~IYr~rPDv~AVvHtH~p~ata~s~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (260)
T PRK07090 77 ITASNLLLVDEDLNVLDGE-GMPNPANRFHSWIYRARPDVNCIIHTHPPHVAALSMLEVPLVVSHMDTCPLYDDCAFLKD 155 (260)
T ss_pred CCHHHeEEECCCCCCCCCC-CCCChhHHHHHHHHHhCCCCCEEEEeCCHHHHHHHhcCCCCCccchhHHhhccceeeccC
Confidence 6899999999999999876 47888766 9995 7999999999999999998742110 00
Q ss_pred -E-E-----------eecCCccEEEeeCc---ccccc
Q 039859 60 -Q-I-----------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 60 -~-~-----------~~~p~~~avLir~H---~WG~~ 80 (271)
. + ++..+..++|++|| +||+|
T Consensus 156 ~~~ip~~~~~a~~va~~l~~~~avLL~nHGvi~~G~~ 192 (260)
T PRK07090 156 WPGVPVGNEEGEIISAALGDKRAILLSHHGQLVAGKS 192 (260)
T ss_pred cCCcCCChHHHHHHHHHhccCCEEEECCCCCeEEcCC
Confidence 0 0 44567789999999 99999
No 33
>COG0235 AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism]
Probab=99.39 E-value=5.3e-14 Score=125.43 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=47.8
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----ccc-ccCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYE-TSNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr-~~~agAVlHtHS~~at~~s~~~ 53 (271)
|+++||++||++|++++++ .+||++++ +|| ++|++||+||||+++|++|++.
T Consensus 54 lt~~dlv~vd~~G~~~~g~-~~pSse~~~H~~iY~~rpd~~aVvHtHs~~a~als~~~ 110 (219)
T COG0235 54 LTADDLVVVDLDGEVVEGG-KKPSSETPIHLAIYRARPDAGAVVHTHSPYATALSTLG 110 (219)
T ss_pred CcHHHeEEEeCCCcEecCC-CCCchhHHHHHHHHHhCCCCCEEEecCcHHHHHHHHhc
Confidence 6899999999999999983 58999988 999 5799999999999999999986
No 34
>PRK13145 araD L-ribulose-5-phosphate 4-epimerase; Provisional
Probab=99.37 E-value=2.8e-13 Score=122.06 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=46.7
Q ss_pred CCCCceEEEeCCCCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~ 53 (271)
|+|+||++||++|++++++ .+||+|++ |||. +|++||+||||+++|+++.+.
T Consensus 52 l~~~div~vd~~G~~~eG~-~kPSsE~~lH~~IY~~rpdv~AVvHtH~~~ata~a~~~ 108 (234)
T PRK13145 52 LTPENMVVTDLDGNVVEGD-LNPSSDLPTHVELYKAWPEVGGIVHTHSTEAVGWAQAG 108 (234)
T ss_pred CCHHHEEEECCCCCCcCCC-CCccccHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHcC
Confidence 6899999999999999976 58998877 9995 699999999999999988764
No 35
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.37 E-value=1e-11 Score=107.06 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=56.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------c-------ccccc-----cC-CCC----
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------L-------AASYF-----LS-KEI---- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~-------~~sy~-----l~-~p~---- 231 (271)
..+|||+.++|++|+++|++++|+||++. .||| + +..|. ++ +|+
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~ 170 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLF 170 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 46899999999999999999999999987 5788 1 22222 34 565
Q ss_pred --CCHHHH--HHHhCCeEEEEeCCCCCC
Q 039859 232 --DVYFGL--IYRFGLDAIISVQPGNGP 255 (271)
Q Consensus 232 --D~~~d~--A~~AG~~t~~v~R~gn~~ 255 (271)
|+..|+ |+++||+++++.|+|+.|
T Consensus 171 vgD~~~Di~~A~~~G~~~i~v~r~~~~~ 198 (198)
T TIGR01428 171 VASNPWDLGGAKKFGFKTAWVNRPGEPP 198 (198)
T ss_pred EeCCHHHHHHHHHCCCcEEEecCCCCCc
Confidence 999999 999999999999988753
No 36
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.36 E-value=4.8e-12 Score=111.33 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=66.2
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc-----cC-CCC-
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF-----LS-KEI- 231 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~-----l~-~p~- 231 (271)
....++|||+.++|+.|+++|++++|+||++. +||+ .+..|. ++ +|+
T Consensus 88 ~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 167 (222)
T PRK10826 88 EETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLT 167 (222)
T ss_pred hcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 34578999999999999999999999999976 6888 112232 33 554
Q ss_pred -----CCHHHH--HHHhCCeEEEEeCCCCCCCC-CCCCceeeCCCCCC
Q 039859 232 -----DVYFGL--IYRFGLDAIISVQPGNGPLP-ESRGFKTINSFAGI 271 (271)
Q Consensus 232 -----D~~~d~--A~~AG~~t~~v~R~gn~~~~-~~~~~~~i~sf~el 271 (271)
|+..|+ |++||++++++.++.+.... ....+.+++||.||
T Consensus 168 ~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl 215 (222)
T PRK10826 168 CVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTEL 215 (222)
T ss_pred eEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHH
Confidence 999999 99999999999997654211 12357788888764
No 37
>PRK07044 aldolase II superfamily protein; Provisional
Probab=99.35 E-value=5e-13 Score=121.55 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=60.1
Q ss_pred CCCCceEEEeCCCCccCCCC-CCCC----CCcccccc-cCCcEEEeccchHHHHHHHHHhCC-----------ceEEE--
Q 039859 1 MEPENTCVLSGDGTILSLPS-RKPY----PHKPTYET-SNAGAGIHGHGIEYFLVTMINLMS-----------KEFQI-- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~-~~ps----~~~~iYr~-~~agAVlHtHS~~at~~s~~~~~~-----------~~~~~-- 61 (271)
|+|+||++||++|+++++.. .+++ .|..||+. ||++|||||||+|+|++|.+..+. +.+.+
T Consensus 64 l~~~div~vd~~g~~veg~~~~~~pse~~lH~~iY~~rpdv~aViHtH~~~a~a~s~~~~~~~p~~~~~~~~~g~i~~~~ 143 (252)
T PRK07044 64 ITASNLVKIDLDGNVVDDSPYPVNPAGFTIHSAIHAARPDAHCVMHTHTTAGVAVSAQRDGLLPLSQHALQFYGRLAYHD 143 (252)
T ss_pred cCHHHeEEECCCCCCcCCCCCCCChHHhHHHHHHHHhCCCCcEEEEECCHHHHHHHHhCCCCCcchHhHHHHcCCceeeC
Confidence 68999999999999998642 1222 34449995 699999999999999998764110 11222
Q ss_pred ---------------eecCCccEEEeeCc---ccccc
Q 039859 62 ---------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 ---------------~~~p~~~avLir~H---~WG~~ 80 (271)
+...+.++|||+|| +||+|
T Consensus 144 y~~~~~~~e~~~~va~~l~~~~avLL~nHGvi~~G~~ 180 (252)
T PRK07044 144 YEGIALDLDEGERLVADLGDKPAMLLRNHGLLTVGRT 180 (252)
T ss_pred CCCCcCCHHHHHHHHHHhccCCEEEECCCCceEecCC
Confidence 23456789999999 99999
No 38
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=99.35 E-value=4.4e-13 Score=120.46 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=46.4
Q ss_pred CCCCceEEEeCC-CCccCCCCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHHH
Q 039859 1 MEPENTCVLSGD-GTILSLPSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMIN 53 (271)
Q Consensus 1 l~peD~~vvD~~-G~~l~~~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~~ 53 (271)
|+|+||++||++ |+++++. .+||+|.+ |||. ||++||+||||+|+|++|.+.
T Consensus 51 l~~~div~vdl~~G~~i~g~-~kpS~E~~lH~~IYr~rpdv~aVvHtH~p~ata~a~~~ 108 (231)
T TIGR00760 51 MTADDMVVVDLETGNVVEGS-KKPSSDTPTHLALYRAFPSIGGIVHTHSRHATIWAQAG 108 (231)
T ss_pred CCHHHEEEEcCcCCccCCCC-CCCCccHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcC
Confidence 689999999999 9999976 47988877 9996 699999999999999988763
No 39
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.35 E-value=1.2e-11 Score=108.02 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=63.9
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc-----cC-CCC---
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF-----LS-KEI--- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~-----l~-~p~--- 231 (271)
..++|||+.++|+.|+++|++++|+||++. .||| ++..|. ++ +|+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence 468999999999999999999999999975 7888 122232 34 554
Q ss_pred ---CCH-HHH--HHHhCCeEEEEeCCCCCC--CC-CCCCceeeCCCCCC
Q 039859 232 ---DVY-FGL--IYRFGLDAIISVQPGNGP--LP-ESRGFKTINSFAGI 271 (271)
Q Consensus 232 ---D~~-~d~--A~~AG~~t~~v~R~gn~~--~~-~~~~~~~i~sf~el 271 (271)
|++ .|+ |++||++++++.++.... .. ...+..++.++.||
T Consensus 172 ~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred EECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 998 798 999999999998854321 11 12356788888775
No 40
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=99.34 E-value=6.1e-13 Score=114.55 Aligned_cols=80 Identities=30% Similarity=0.460 Sum_probs=62.4
Q ss_pred CCCCceEEEeCC-CCccCC--CCCCCCCCcc----cccc-cCCcEEEeccchHHHHHHHH-Hh-------------CCce
Q 039859 1 MEPENTCVLSGD-GTILSL--PSRKPYPHKP----TYET-SNAGAGIHGHGIEYFLVTMI-NL-------------MSKE 58 (271)
Q Consensus 1 l~peD~~vvD~~-G~~l~~--~~~~ps~~~~----iYr~-~~agAVlHtHS~~at~~s~~-~~-------------~~~~ 58 (271)
|+|+||++||++ |+++++ +..+||+|+. |||. ||++||+|+||++++++|.+ .. .+..
T Consensus 44 l~~~d~~~v~~~~g~~l~g~~~~~~ps~e~~lH~~iy~~rpdv~aViH~H~~~~~a~s~~~~~~l~~~~~~~~~~~~~~~ 123 (184)
T PF00596_consen 44 LTPEDIVVVDLDDGNILEGDEGGGKPSSETPLHAAIYRARPDVNAVIHTHPPYATALSCLAGEPLPPITQEAARFYFGGE 123 (184)
T ss_dssp CTGGGEEEEETTTSEEEEESTTSSCBCTTHHHHHHHHHHCTTSSEEEEE--HHHHHHHTSSTCCCCSSSHHHHHTHTSSC
T ss_pred CChhhceEEeccccceeeccCCCCCCCHhHHHHhHHHcCCCCCCEEEecChHHHHhHHhhhhcccccchhhHHhhhcCcc
Confidence 689999999999 999964 2357888877 9996 69999999999999999976 21 0123
Q ss_pred EEE----------------eecC-CccEEEeeCc---ccccc
Q 039859 59 FQI----------------KAYP-KTTAVLVPNH---VWRAG 80 (271)
Q Consensus 59 ~~~----------------~~~p-~~~avLir~H---~WG~~ 80 (271)
+.+ +... +..++||+|| +||+|
T Consensus 124 v~~~~~~~~~~~~l~~~i~~~l~~~~~~vll~nHG~~~~G~s 165 (184)
T PF00596_consen 124 VPVVPYAPPGSEELAEAIAEALGEDRKAVLLRNHGVVVWGKS 165 (184)
T ss_dssp EEEE-THSTTCHHHHHHHHHHHTCTSSEEEETTTEEEEEESS
T ss_pred ceeeccccccchhhhhhhhhhhcCCceEEeecCCceEEEeCC
Confidence 554 3344 8899999999 99999
No 41
>PRK06208 hypothetical protein; Provisional
Probab=99.33 E-value=5.7e-13 Score=122.68 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCCCceEEEeCCCCccCCCCCCCC------CCcccccc-cCCcEEEeccchHHHHHHHHHhC-----------CceEEE-
Q 039859 1 MEPENTCVLSGDGTILSLPSRKPY------PHKPTYET-SNAGAGIHGHGIEYFLVTMINLM-----------SKEFQI- 61 (271)
Q Consensus 1 l~peD~~vvD~~G~~l~~~~~~ps------~~~~iYr~-~~agAVlHtHS~~at~~s~~~~~-----------~~~~~~- 61 (271)
|+|+||++||++|+++++. +|+ +|..|||. +|++|||||||+|+|++|.+... .+.+.+
T Consensus 90 lt~eDiv~vd~dG~~v~G~--~ps~~sE~~lH~~IYr~rpDv~AViHtHpp~ata~s~~~~~l~~i~~~~~~~~~~ip~~ 167 (274)
T PRK06208 90 IKVSDLLLVDHDGEVVEGD--RPLNRAAFAIHSAIHEARPDVVAAAHTHSTYGKAWSTLGRPLDPITQDACAFYEDHALF 167 (274)
T ss_pred CcHHHeEEECCCCCCcCCC--CCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHhCCCCChhhHHHHHHcCCceec
Confidence 6899999999999999876 443 33449995 69999999999999998876410 011222
Q ss_pred -----------------eecCCccEEEeeCc---ccccc
Q 039859 62 -----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 62 -----------------~~~p~~~avLir~H---~WG~~ 80 (271)
++..+.+++||+|| +||+|
T Consensus 168 ~~~~g~~~s~ela~~va~~l~~~~avLL~NHGvv~~G~t 206 (274)
T PRK06208 168 DDFTGVVVDTSEGRRIAAALGTHKAVILQNHGLLTVGPS 206 (274)
T ss_pred cCCCCccCchHHHHHHHHHhccCCEEEECCCCceEeeCC
Confidence 33456689999999 99999
No 42
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.31 E-value=6.6e-12 Score=111.55 Aligned_cols=85 Identities=9% Similarity=0.030 Sum_probs=63.3
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-----c-c-------cccc-----cC-CCC---
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-----L-A-------ASYF-----LS-KEI--- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-----~-~-------~sy~-----l~-~p~--- 231 (271)
..++|||+.++|++|+++|++++|+||++. .||| + . ..|. ++ +|+
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l 172 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV 172 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 468999999999999999999999999986 6777 1 1 1122 34 565
Q ss_pred ---CCHHHH--HHHhCCeEEEEeCCCC-CC--CCCCCCceeeCCCCCC
Q 039859 232 ---DVYFGL--IYRFGLDAIISVQPGN-GP--LPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ---D~~~d~--A~~AG~~t~~v~R~gn-~~--~~~~~~~~~i~sf~el 271 (271)
|+..|+ |++||+++++|.|... .+ +....++.+++++.||
T Consensus 173 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 173 YVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred EeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 999999 9999999999988322 21 1123467788887654
No 43
>PRK11587 putative phosphatase; Provisional
Probab=99.31 E-value=3.2e-11 Score=106.01 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=63.9
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC------------Cccc-------------cccccc-----cC-CCC--
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS------------TFIS-------------LAASYF-----LS-KEI-- 231 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~------------~yFD-------------~~~sy~-----l~-~p~-- 231 (271)
.-...+|||+.++|+.|+++|++++|+||++. .+|+ ++..|. ++ .|+
T Consensus 79 ~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~ 158 (218)
T PRK11587 79 TEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC 158 (218)
T ss_pred hcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence 34567999999999999999999999999986 4555 222222 34 565
Q ss_pred ----CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
|+..|+ |++|||+++++.+..+. .....+..+++++.||
T Consensus 159 l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el 203 (218)
T PRK11587 159 VVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQL 203 (218)
T ss_pred EEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhhe
Confidence 999999 99999999999774322 1222356788888775
No 44
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.29 E-value=1.6e-11 Score=117.71 Aligned_cols=95 Identities=6% Similarity=-0.069 Sum_probs=68.0
Q ss_pred HHHHhhh-cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------c-------ccccc--
Q 039859 176 IWRTGFE-SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------L-------AASYF-- 226 (271)
Q Consensus 176 iw~~~y~-~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~-------~~sy~-- 226 (271)
.|++.|. ...-...+|||+.++|+.|+++|++++|+||+++ .||| + +..|.
T Consensus 202 ~~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A 281 (381)
T PLN02575 202 RKEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYA 281 (381)
T ss_pred HHHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHH
Confidence 3555665 2223467999999999999999999999999987 7888 1 12222
Q ss_pred ---cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 227 ---LS-KEI------DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 227 ---l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
++ .|+ |+..|+ |++|||++++|.+. ........+..+|++|.||
T Consensus 282 ~~~lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~-~~~~~l~~Ad~iI~s~~EL 337 (381)
T PLN02575 282 AQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASK-HPIYELGAADLVVRRLDEL 337 (381)
T ss_pred HHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCC-CChhHhcCCCEEECCHHHH
Confidence 34 565 999999 99999999999763 2211112246678888764
No 45
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.28 E-value=2.7e-11 Score=105.12 Aligned_cols=86 Identities=19% Similarity=0.149 Sum_probs=64.4
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------cccccc------------cC-CCC--
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------LAASYF------------LS-KEI-- 231 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~~~sy~------------l~-~p~-- 231 (271)
-..++|||+.++|++|+++|++++|+||++. +||| +...++ ++ .|+
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 151 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDA 151 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhhe
Confidence 3578999999999999999999999999976 6777 111111 23 555
Q ss_pred ----CCHHHH--HHHhCCeEEEEeC-CCCC-CCCCCCCceeeCCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQ-PGNG-PLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R-~gn~-~~~~~~~~~~i~sf~el 271 (271)
|+..|+ |+++||+++++.| +++. .+....+..+++++.+|
T Consensus 152 l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l 199 (205)
T TIGR01454 152 VMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSL 199 (205)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHH
Confidence 999999 9999999999998 3433 33334466777877653
No 46
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.26 E-value=7.1e-11 Score=103.11 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=68.6
Q ss_pred HHHHhhhc-CcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc---c----------ccccc--
Q 039859 176 IWRTGFES-NELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS---L----------AASYF-- 226 (271)
Q Consensus 176 iw~~~y~~-g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD---~----------~~sy~-- 226 (271)
.|.+.|.. -.....++||+.++|+.|+++|++++|+||+.. .||+ . +..|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~ 158 (226)
T PRK13222 79 LFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLA 158 (226)
T ss_pred HHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHH
Confidence 45566663 223478999999999999999999999999986 5677 1 11122
Q ss_pred ---cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCC--CCCCCCCceeeCCCCCC
Q 039859 227 ---LS-KEI------DVYFGL--IYRFGLDAIISVQPGNG--PLPESRGFKTINSFAGI 271 (271)
Q Consensus 227 ---l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~--~~~~~~~~~~i~sf~el 271 (271)
++ +|+ |+..|+ |+++|+++++|.+..+. ++....+..+++++.+|
T Consensus 159 ~~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l 217 (226)
T PRK13222 159 CEKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAEL 217 (226)
T ss_pred HHHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHH
Confidence 23 444 999999 99999999999985432 22223456788887653
No 47
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.26 E-value=2.9e-11 Score=110.68 Aligned_cols=96 Identities=11% Similarity=0.161 Sum_probs=70.9
Q ss_pred HHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc---
Q 039859 176 IWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF--- 226 (271)
Q Consensus 176 iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~--- 226 (271)
.|++.|........+||++.++|+.|+++|++++|+||++. .||+ .+..|.
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~ 167 (272)
T PRK13223 88 LFMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVM 167 (272)
T ss_pred HHHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHH
Confidence 56777776555678999999999999999999999999976 5677 111122
Q ss_pred --cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCC--CCCCCCCceeeCCCCCC
Q 039859 227 --LS-KEI------DVYFGL--IYRFGLDAIISVQPGNG--PLPESRGFKTINSFAGI 271 (271)
Q Consensus 227 --l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~--~~~~~~~~~~i~sf~el 271 (271)
++ .|+ |+..|+ |++|||++++|.+..+. ++....+..+++++.+|
T Consensus 168 ~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el 225 (272)
T PRK13223 168 KMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRAL 225 (272)
T ss_pred HHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHH
Confidence 23 554 999999 99999999999883332 33333467788877653
No 48
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.26 E-value=1.3e-11 Score=110.71 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=54.2
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Ccc-c-------------cccccc-----cC-C-C
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFI-S-------------LAASYF-----LS-K-E 230 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yF-D-------------~~~sy~-----l~-~-p 230 (271)
.-...+|||+.++|+.|+++|++++|+||++. +|| | .+..|. ++ . |
T Consensus 95 ~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~ 174 (253)
T TIGR01422 95 AEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDV 174 (253)
T ss_pred HhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCc
Confidence 34578999999999999999999999999986 675 6 112222 34 3 6
Q ss_pred C------CCHHHH--HHHhCCeEEEEeCC
Q 039859 231 I------DVYFGL--IYRFGLDAIISVQP 251 (271)
Q Consensus 231 ~------D~~~d~--A~~AG~~t~~v~R~ 251 (271)
+ |++.|+ |++|||.+++|.+.
T Consensus 175 ~~~l~IGDs~~Di~aA~~aGi~~i~v~~g 203 (253)
T TIGR01422 175 AACVKVGDTVPDIEEGRNAGMWTVGLILS 203 (253)
T ss_pred hheEEECCcHHHHHHHHHCCCeEEEEecC
Confidence 5 999999 99999999999873
No 49
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.24 E-value=3.1e-11 Score=99.39 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=53.0
Q ss_pred CcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------cc-------cccc-----cC-CCC
Q 039859 184 NELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------LA-------ASYF-----LS-KEI 231 (271)
Q Consensus 184 g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~~-------~sy~-----l~-~p~ 231 (271)
......+|||+.++|++|+++|++++|+||++. +||| +. ..|. ++ .|+
T Consensus 72 ~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 72 LESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp HHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 346788999999999999999999999999987 6888 11 2222 23 555
Q ss_pred ------CCHHHH--HHHhCCeEEEE
Q 039859 232 ------DVYFGL--IYRFGLDAIIS 248 (271)
Q Consensus 232 ------D~~~d~--A~~AG~~t~~v 248 (271)
|+..|+ |+++||++++|
T Consensus 152 ~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 152 EILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 999999 99999999986
No 50
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=99.24 E-value=5.8e-12 Score=116.03 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCC-c--eEEEeCCCCccC---C--CCCCCCCCcc----cc----c--ccCCcEEEeccchHHHHHHHHHh---------
Q 039859 2 EPE-N--TCVLSGDGTILS---L--PSRKPYPHKP----TY----E--TSNAGAGIHGHGIEYFLVTMINL--------- 54 (271)
Q Consensus 2 ~pe-D--~~vvD~~G~~l~---~--~~~~ps~~~~----iY----r--~~~agAVlHtHS~~at~~s~~~~--------- 54 (271)
+|+ | +++||++|++++ + +..+||+|++ || | +++++||+||||+|+|++|.+..
T Consensus 85 ~p~dd~~lv~vd~~G~~~~~~~g~~~~~kPSsE~~lH~~IY~~~~~~~rpdv~AVvHtHs~~atals~~~~l~~~~~~~~ 164 (274)
T PRK03634 85 DPAANLGVIRIDSDGAGYHILWGLTNGGKPTSELPAHLMSHIARLKATNGKDRVIMHCHATNLIALTYVLELDEAVFTRT 164 (274)
T ss_pred CchhcCCEEEEcCCCCEeeeeccCCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEecCchHHHHHHCcCCcChHhhhhh
Confidence 565 4 778999998753 2 2358998877 99 3 46999999999999999997642
Q ss_pred ---C--------CceEEE----------------eecCCccEEEeeCc---ccccc
Q 039859 55 ---M--------SKEFQI----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 55 ---~--------~~~~~~----------------~~~p~~~avLir~H---~WG~~ 80 (271)
. .+.+.+ ++..+.++||++|| +||+|
T Consensus 165 ~~~~~~e~~~~~~~~i~vvpy~~pgs~eLa~~v~~~l~~~~avLL~nHGvv~~G~~ 220 (274)
T PRK03634 165 LWEMSTECLVVFPDGVGIVPWMVPGTDEIGQATAEKMQKHDLVLWPKHGVFGSGPT 220 (274)
T ss_pred hhhcCccceeEeCCceeEecCCCCCCHHHHHHHHHHhccCCEEEEcCCCCeEecCC
Confidence 0 011333 44567789999999 99999
No 51
>PLN02940 riboflavin kinase
Probab=99.23 E-value=4.6e-11 Score=114.61 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=63.8
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC--------------Cccc-------------cccccc-----cC-CCC--
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS--------------TFIS-------------LAASYF-----LS-KEI-- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------------~yFD-------------~~~sy~-----l~-~p~-- 231 (271)
...+|||+.++|++|+++|++++|+||++. .||| ++..|. ++ +|+
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 567999999999999999999999999977 6777 112222 34 555
Q ss_pred ----CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
|+..|+ |++|||++++|.+..........+..+++|+.|+
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el 216 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDL 216 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHc
Confidence 999999 9999999999988433222223356678887764
No 52
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.20 E-value=4.6e-11 Score=109.76 Aligned_cols=96 Identities=14% Similarity=-0.002 Sum_probs=69.3
Q ss_pred HHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------cc----cccc-----c
Q 039859 176 IWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------LA----ASYF-----L 227 (271)
Q Consensus 176 iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~~----~sy~-----l 227 (271)
.|++.|....-...+|||+.++|+.|+++|++++|+||++. .||+ +. ..|. +
T Consensus 129 ~~~~~~~~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~ 208 (273)
T PRK13225 129 RVQRQLGDCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVARE 208 (273)
T ss_pred HHHHHHHhhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHh
Confidence 34444554344568999999999999999999999999987 6787 11 1111 2
Q ss_pred C-CCC------CCHHHH--HHHhCCeEEEEeCCCCCC--CCCCCCceeeCCCCCC
Q 039859 228 S-KEI------DVYFGL--IYRFGLDAIISVQPGNGP--LPESRGFKTINSFAGI 271 (271)
Q Consensus 228 ~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~~--~~~~~~~~~i~sf~el 271 (271)
+ .|+ |+..|+ |++|||.+++|.+..+.. +....++.+++++.+|
T Consensus 209 ~~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL 263 (273)
T PRK13225 209 GWQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDL 263 (273)
T ss_pred CcChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHH
Confidence 3 555 999999 999999999998843332 2233467788887653
No 53
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=99.19 E-value=1.1e-11 Score=113.96 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCce--EEEeCCCCccC------CCCCCCCCCcc--------cccc-cCCcEEEeccchHHHHHHHHHhCC---------
Q 039859 3 PENT--CVLSGDGTILS------LPSRKPYPHKP--------TYET-SNAGAGIHGHGIEYFLVTMINLMS--------- 56 (271)
Q Consensus 3 peD~--~vvD~~G~~l~------~~~~~ps~~~~--------iYr~-~~agAVlHtHS~~at~~s~~~~~~--------- 56 (271)
++|+ +++|++|++++ ++ .+||+|++ +|+. +|++||+||||+|+|++|.+....
T Consensus 86 ~~d~~iv~vd~~G~~~~~~~~~~~g-~kPSsE~~mH~~v~~~iy~~rpd~~AVvHtHp~~ata~s~~~~~~~~~~~~~l~ 164 (270)
T TIGR02624 86 AENLGILRVSEDGASVHLLWGLTDG-GVPTSELPAHFMSHIARLKVDPENRVIMHCHATNLIAMTFTHELDEAVFTRTLW 164 (270)
T ss_pred hhceeEEEECCCCCEEEeeccccCC-CCcChHHHHHHHHHHHHHHhCCCCCEEEccCcHHHHHHHccCcccchhcccccc
Confidence 4685 56899999997 33 48999877 3775 699999999999999999864210
Q ss_pred -----------ceEEE----------------eecCCccEEEeeCc---ccccc
Q 039859 57 -----------KEFQI----------------KAYPKTTAVLVPNH---VWRAG 80 (271)
Q Consensus 57 -----------~~~~~----------------~~~p~~~avLir~H---~WG~~ 80 (271)
+.+.+ ++..+.++|||+|| +||+|
T Consensus 165 ~~~~e~~~~~~~~i~vvp~~~pGs~eLA~~v~~~l~~~~avLL~nHGvva~G~~ 218 (270)
T TIGR02624 165 QMCTECLVVFPDGVGIIPWMVPGTNEIGEATAEKMKEHRLVLWPHHGIFGAGPS 218 (270)
T ss_pred ccccchhheeCCccccccCcCCCCHHHHHHHHHHhccCCEEEEcCCCCeEecCC
Confidence 01222 44456789999999 99999
No 54
>PRK09449 dUMP phosphatase; Provisional
Probab=99.19 E-value=5.2e-10 Score=98.07 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=61.8
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------c-------ccccc-----cC--CCC---
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------L-------AASYF-----LS--KEI--- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~-------~~sy~-----l~--~p~--- 231 (271)
..+|||+.++|++|+ +|++++|+||++. .||| + +..|. ++ +|+
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 569999999999999 6899999999976 6888 1 12222 34 334
Q ss_pred ---CCH-HHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 232 ---DVY-FGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ---D~~-~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
|+. .|+ |++|||+++++.|.|..+.....++.+++++.||
T Consensus 173 ~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el 218 (224)
T PRK09449 173 MVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSEL 218 (224)
T ss_pred EEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHH
Confidence 997 598 9999999999987654333223457788887664
No 55
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.18 E-value=6.1e-11 Score=107.57 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=57.0
Q ss_pred HHHhhh-cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Ccc-c-------------cccccc--
Q 039859 177 WRTGFE-SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFI-S-------------LAASYF-- 226 (271)
Q Consensus 177 w~~~y~-~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yF-D-------------~~~sy~-- 226 (271)
|++.|. ...-...+|||+.++|+.|+++|++++|+||++. +|| | ++..|.
T Consensus 88 ~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a 167 (267)
T PRK13478 88 FEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKN 167 (267)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHH
Confidence 444443 2334568999999999999999999999999977 564 6 112222
Q ss_pred ---cC-C-CC------CCHHHH--HHHhCCeEEEEeCCC
Q 039859 227 ---LS-K-EI------DVYFGL--IYRFGLDAIISVQPG 252 (271)
Q Consensus 227 ---l~-~-p~------D~~~d~--A~~AG~~t~~v~R~g 252 (271)
++ . |+ |++.|+ |++||+++++|.+.+
T Consensus 168 ~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~ 206 (267)
T PRK13478 168 AIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSG 206 (267)
T ss_pred HHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCc
Confidence 34 3 45 999999 999999999999844
No 56
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.18 E-value=2.3e-10 Score=111.90 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=62.9
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------cccc------cc--cC--CCC------
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------LAAS------YF--LS--KEI------ 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~~~s------y~--l~--~p~------ 231 (271)
..++|||+.+.|+.|+++|++++|+||++. .||| +... |. +. .|+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VG 407 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVG 407 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEe
Confidence 468999999999999999999999999988 6788 1111 11 22 454
Q ss_pred CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 232 DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
|++.|+ |++|||.++++.|..........++.+++++.||
T Consensus 408 Ds~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el 449 (459)
T PRK06698 408 DRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLEL 449 (459)
T ss_pred CCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHH
Confidence 999999 9999999999988432211112356778887653
No 57
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.17 E-value=5.9e-10 Score=99.69 Aligned_cols=84 Identities=11% Similarity=0.017 Sum_probs=62.7
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC--------Cccc------cccccc------------cC-CCC------CC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS--------TFIS------LAASYF------------LS-KEI------DV 233 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------~yFD------~~~sy~------------l~-~p~------D~ 233 (271)
...+|||+.++|++|++. ++++|+|||+. .||| +...++ ++ +|+ |+
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~ 189 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQPELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDD 189 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCchHHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCC
Confidence 368999999999999975 99999999976 7888 222222 34 565 99
Q ss_pred -HHHH--HHHhCCeEEEEeCCCCCC---CCC-CCCceeeCCCCCC
Q 039859 234 -YFGL--IYRFGLDAIISVQPGNGP---LPE-SRGFKTINSFAGI 271 (271)
Q Consensus 234 -~~d~--A~~AG~~t~~v~R~gn~~---~~~-~~~~~~i~sf~el 271 (271)
..|+ |++|||+++|+.|.+... .+. ..++.+|+++.||
T Consensus 190 ~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el 234 (238)
T PRK10748 190 LTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASL 234 (238)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHH
Confidence 5999 999999999999965331 111 2367788888764
No 58
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.16 E-value=2.7e-10 Score=99.58 Aligned_cols=84 Identities=15% Similarity=0.062 Sum_probs=61.1
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC---------------Cccc------cccccc------------cC-C-CC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS---------------TFIS------LAASYF------------LS-K-EI 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---------------~yFD------~~~sy~------------l~-~-p~ 231 (271)
..++|||+.++|+.|+++|++++|+||++. .||+ +....+ ++ . |+
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 468999999999999999999999999987 4677 211121 33 4 55
Q ss_pred ------CCHHHH--HHHhCCeE-EEEeCCCCC--CCCCCCCceeeCCCCC
Q 039859 232 ------DVYFGL--IYRFGLDA-IISVQPGNG--PLPESRGFKTINSFAG 270 (271)
Q Consensus 232 ------D~~~d~--A~~AG~~t-~~v~R~gn~--~~~~~~~~~~i~sf~e 270 (271)
|+..|+ |++|||.+ +++.+..+. .+....+..+++++.+
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~ 214 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVAD 214 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHH
Confidence 999999 99999999 777664322 2222335667777655
No 59
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.13 E-value=7.7e-10 Score=96.26 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=64.1
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------ccc-------ccc-----c-C-CCC--
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------LAA-------SYF-----L-S-KEI-- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~~~-------sy~-----l-~-~p~-- 231 (271)
...+|||+.++|++|+++ ++++|+||++. .||| +.. .|. + + .|+
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 173 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEV 173 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchhe
Confidence 357999999999999999 99999999977 7888 211 222 5 5 565
Q ss_pred ----CCH-HHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 232 ----DVY-FGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ----D~~-~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
|++ .|+ |+++||+++++.|.+..+.....+..+++++.||
T Consensus 174 v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el 220 (224)
T TIGR02254 174 LMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEEL 220 (224)
T ss_pred EEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHH
Confidence 997 698 9999999999998655433333456778887654
No 60
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.06 E-value=1.6e-09 Score=91.76 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=49.4
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC-----------Cccc-------------cccccc-----cC-CCC------
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS-----------TFIS-------------LAASYF-----LS-KEI------ 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-----------~yFD-------------~~~sy~-----l~-~p~------ 231 (271)
..+|||+.++|++|+++|++++|+||+.. .||| ++..|. ++ +|+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vg 165 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKNAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIE 165 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 57999999999999999999999998754 7788 122222 23 454
Q ss_pred CCHHHH--HHHhCCeEEEE
Q 039859 232 DVYFGL--IYRFGLDAIIS 248 (271)
Q Consensus 232 D~~~d~--A~~AG~~t~~v 248 (271)
|++.|+ |+++||++++|
T Consensus 166 D~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 166 DAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred cCHHHHHHHHHcCCEEEec
Confidence 999999 99999999987
No 61
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.04 E-value=4.3e-09 Score=90.90 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=48.1
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC------------Cccc-------------cccccc-----cC-CCC-----
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS------------TFIS-------------LAASYF-----LS-KEI----- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~------------~yFD-------------~~~sy~-----l~-~p~----- 231 (271)
..+|||+.++|+.|+++|++++|+||++. .||| ++..|. ++ +|+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 47999999999999999999999999866 6888 111122 33 555
Q ss_pred -CCH-HHH--HHHhCCeEEE
Q 039859 232 -DVY-FGL--IYRFGLDAII 247 (271)
Q Consensus 232 -D~~-~d~--A~~AG~~t~~ 247 (271)
|+. .|+ |++|||+++|
T Consensus 184 gD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CCCchHHHHHHHHcCCeeeC
Confidence 997 788 9999999985
No 62
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.00 E-value=9.6e-10 Score=96.34 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=48.4
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------ccc-------ccc-----cC-CCC-
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------LAA-------SYF-----LS-KEI- 231 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------~~~-------sy~-----l~-~p~- 231 (271)
-...+|||+.++|+.| +++++|+||++. .||+ +.. .|. ++ +|+
T Consensus 85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 161 (221)
T PRK10563 85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVEN 161 (221)
T ss_pred ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 3478999999999999 489999999986 7785 111 121 23 554
Q ss_pred -----CCHHHH--HHHhCCeEEEEeC
Q 039859 232 -----DVYFGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 232 -----D~~~d~--A~~AG~~t~~v~R 250 (271)
|++.|+ |++|||+++++..
T Consensus 162 ~l~igDs~~di~aA~~aG~~~i~~~~ 187 (221)
T PRK10563 162 CILVDDSSAGAQSGIAAGMEVFYFCA 187 (221)
T ss_pred eEEEeCcHhhHHHHHHCCCEEEEECC
Confidence 999999 9999999998865
No 63
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.97 E-value=1.8e-09 Score=96.01 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=51.7
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc-----cC-CCC--
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF-----LS-KEI-- 231 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~-----l~-~p~-- 231 (271)
-...+|||+.+.|+.|+++|++++|+||+++ .||| ++..|. ++ +|+
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 3468999999999999999999999999987 7787 122232 34 565
Q ss_pred ----CCHHHH--HHHhCCeEEEEeC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R 250 (271)
|++.++ |++|||++++...
T Consensus 170 l~igDs~~di~aA~~aG~~~~~~v~ 194 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGIRYCLGVT 194 (224)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEEEe
Confidence 999999 9999999765444
No 64
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.96 E-value=9.2e-09 Score=89.77 Aligned_cols=83 Identities=13% Similarity=0.015 Sum_probs=61.0
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc-----cC-CCC---
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF-----LS-KEI--- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~-----l~-~p~--- 231 (271)
..+.||++.++|++++.+ ++++|+|||.. +||| ++..|. ++ +|+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 578999999999999999 99999999865 8888 333333 34 565
Q ss_pred ---CCHHHH---HHHhCCeEEEEeCCCCCC-CCCCCCceeeCCCCC
Q 039859 232 ---DVYFGL---IYRFGLDAIISVQPGNGP-LPESRGFKTINSFAG 270 (271)
Q Consensus 232 ---D~~~d~---A~~AG~~t~~v~R~gn~~-~~~~~~~~~i~sf~e 270 (271)
|+...+ |+++||++||+.|.+... .....++..++++.+
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~ 221 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAE 221 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHH
Confidence 766655 999999999999976432 011235666666654
No 65
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=1.3e-08 Score=93.88 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=60.4
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc---------------cccccc-----cC-CCC--
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS---------------LAASYF-----LS-KEI-- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD---------------~~~sy~-----l~-~p~-- 231 (271)
..+|||+.++|+.|+++|++++|+||++. .||+ ++..|. ++ +|+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 222 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC 222 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence 47999999999999999999999999987 2333 111111 23 554
Q ss_pred ----CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
|+..|+ |++|||++++|......+..-..++.++.++.++
T Consensus 223 l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l 268 (286)
T PLN02779 223 VVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDV 268 (286)
T ss_pred EEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhc
Confidence 999999 9999999999977322211112357788888764
No 66
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.95 E-value=5.5e-09 Score=88.41 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=49.5
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-----------Cccc-------------cccccc-----cC-CCC-----
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-----------TFIS-------------LAASYF-----LS-KEI----- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-----------~yFD-------------~~~sy~-----l~-~p~----- 231 (271)
..++|||+.++|+.|+++|++++|+||+.. .||| .+..|. ++ +|+
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~I 165 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSSKNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVF 165 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCchhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 378999999999999999999999999843 6787 111222 23 554
Q ss_pred -CCHHHH--HHHhCCeEEEE
Q 039859 232 -DVYFGL--IYRFGLDAIIS 248 (271)
Q Consensus 232 -D~~~d~--A~~AG~~t~~v 248 (271)
|+..|+ |+++|+++++|
T Consensus 166 gD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 166 EDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred eCcHhhHHHHHHCCCeEeeC
Confidence 999999 99999999875
No 67
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.93 E-value=6.4e-09 Score=87.41 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=49.9
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC------------Cccc-------------cccccc-----cC-CCC-----
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS------------TFIS-------------LAASYF-----LS-KEI----- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~------------~yFD-------------~~~sy~-----l~-~p~----- 231 (271)
.++|||+.++|++|+++|++++|+||++. .||| ++..|. ++ +|+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDHAVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 68999999999999999999999999974 6677 122232 33 565
Q ss_pred -CCHHHH--HHHhCCeEEEE
Q 039859 232 -DVYFGL--IYRFGLDAIIS 248 (271)
Q Consensus 232 -D~~~d~--A~~AG~~t~~v 248 (271)
|++.|+ |+++|+++++|
T Consensus 164 gD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 164 DDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred cCCHHHHHHHHHcCCEEEeC
Confidence 999999 99999999975
No 68
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.91 E-value=6.9e-09 Score=90.28 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.2
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC---------------Cccc-------------cccccc-----cC-CCC-
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS---------------TFIS-------------LAASYF-----LS-KEI- 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---------------~yFD-------------~~~sy~-----l~-~p~- 231 (271)
...+|||+.++|++|+++|++++|+||++. .||| ++..|. ++ +|+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 567999999999999999999999999853 5677 112222 33 554
Q ss_pred -----CCHHHH--HHHhCCeEEEEeCC
Q 039859 232 -----DVYFGL--IYRFGLDAIISVQP 251 (271)
Q Consensus 232 -----D~~~d~--A~~AG~~t~~v~R~ 251 (271)
|+..|+ |+++||+++++.++
T Consensus 172 ~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 172 CVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred eEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 999999 99999999999874
No 69
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.89 E-value=6.1e-09 Score=90.30 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=51.7
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC--------------Cccc-------------cccccc-----cC-CCC---
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS--------------TFIS-------------LAASYF-----LS-KEI--- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------------~yFD-------------~~~sy~-----l~-~p~--- 231 (271)
..+|||+.++|++|+++|++++|+||++. .||| ++..|. ++ +|+
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 35899999999999999999999999964 5676 222332 34 565
Q ss_pred ---CCHHHH--HHHhCCeEEEEeCC
Q 039859 232 ---DVYFGL--IYRFGLDAIISVQP 251 (271)
Q Consensus 232 ---D~~~d~--A~~AG~~t~~v~R~ 251 (271)
|++.++ |+++||+++++..+
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecCC
Confidence 999998 99999999998764
No 70
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=2.6e-08 Score=106.62 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=64.0
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC--------------Cccc-------------cccccc-----cC-CCC---
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS--------------TFIS-------------LAASYF-----LS-KEI--- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------------~yFD-------------~~~sy~-----l~-~p~--- 231 (271)
..+|||+.++|++|+++|++++|+||+.. .||| ++..|. ++ .|+
T Consensus 160 ~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v 239 (1057)
T PLN02919 160 GIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECV 239 (1057)
T ss_pred CccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEE
Confidence 45899999999999999999999999976 3677 122232 34 565
Q ss_pred ---CCHHHH--HHHhCCeEEEEeCCCCC-CCCCCCCceeeCCCCCC
Q 039859 232 ---DVYFGL--IYRFGLDAIISVQPGNG-PLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ---D~~~d~--A~~AG~~t~~v~R~gn~-~~~~~~~~~~i~sf~el 271 (271)
|+..|+ |++|||++++|.+.... .+...++..++++|.++
T Consensus 240 ~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el 285 (1057)
T PLN02919 240 VIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNI 285 (1057)
T ss_pred EEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHC
Confidence 999999 99999999999984322 23334567788888764
No 71
>PLN02811 hydrolase
Probab=98.80 E-value=2e-08 Score=88.50 Aligned_cols=85 Identities=8% Similarity=0.075 Sum_probs=61.9
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC--------------Cccc-----c---ccccc------------c---C-
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS--------------TFIS-----L---AASYF------------L---S- 228 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------------~yFD-----~---~~sy~------------l---~- 228 (271)
...+||||.++|+.|+++|++++|+||++. .||+ + ...++ + +
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 467999999999999999999999999976 5666 2 11122 2 1
Q ss_pred CCC------CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCCC
Q 039859 229 KEI------DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAGI 271 (271)
Q Consensus 229 ~p~------D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~el 271 (271)
.|+ |+..|+ |++|||++++|.|..........+..++++|.|+
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~ 206 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDF 206 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhC
Confidence 354 999999 9999999999988432211112345677877664
No 72
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=84.20 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=60.5
Q ss_pred HHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------------cccccc----
Q 039859 177 WRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------------LAASYF---- 226 (271)
Q Consensus 177 w~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------------~~~sy~---- 226 (271)
+.+.+..-.....+.||+.++|++|+++|+++++.||.++ +||+ .|..|.
T Consensus 74 ~~~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~ 153 (221)
T COG0637 74 LYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAE 153 (221)
T ss_pred HHHHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHH
Confidence 3344445555678999999999999999999999999975 8888 445554
Q ss_pred -cC-CCC------CCHHHH--HHHhCCeEEEEeC
Q 039859 227 -LS-KEI------DVYFGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 227 -l~-~p~------D~~~d~--A~~AG~~t~~v~R 250 (271)
|+ .|+ |++..+ |++|||.++++..
T Consensus 154 ~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 154 RLGVDPEECVVVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred HcCCChHHeEEEecchhHHHHHHHCCCEEEEecC
Confidence 66 676 999999 9999999999987
No 73
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.74 E-value=1.7e-07 Score=79.73 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=46.2
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------cccc-------cc-----cC-CCC----
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------LAAS-------YF-----LS-KEI---- 231 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~~~s-------y~-----l~-~p~---- 231 (271)
.++||+ .+.|+.|++. ++++|+||++. +||| +... |. ++ .|+
T Consensus 87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 468885 6999999875 89999999976 7888 1111 22 23 454
Q ss_pred --CCHHHH--HHHhCCeEEEEe
Q 039859 232 --DVYFGL--IYRFGLDAIISV 249 (271)
Q Consensus 232 --D~~~d~--A~~AG~~t~~v~ 249 (271)
|+..|+ |++||+++++|.
T Consensus 165 igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred EeccHhhHHHHHHCCCEEEeec
Confidence 999999 999999999874
No 74
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.63 E-value=1.2e-07 Score=80.82 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=46.8
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc------cccc-----------cc-----cC-CC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS------LAAS-----------YF-----LS-KE 230 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD------~~~s-----------y~-----l~-~p 230 (271)
...+|||+.++|++|+ ++++|+||++. +||| +... |. ++ .|
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~ 158 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDP 158 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence 4679999999999998 48999999987 7888 2221 11 34 55
Q ss_pred C------CCHHHH--HHHhCCeEEEE
Q 039859 231 I------DVYFGL--IYRFGLDAIIS 248 (271)
Q Consensus 231 ~------D~~~d~--A~~AG~~t~~v 248 (271)
+ |++.|+ |+++||++++|
T Consensus 159 ~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 159 ERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred cceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 5 999999 99999999875
No 75
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.63 E-value=6.2e-08 Score=83.53 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=55.8
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------C----ccc----------cccccc-----cCCCC--
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------T----FIS----------LAASYF-----LSKEI-- 231 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~----yFD----------~~~sy~-----l~~p~-- 231 (271)
....+|||+.++|++|++++ +++++||++. . ||+ .+..|. ++ |+
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~-~~~~ 148 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG-DRVV 148 (197)
T ss_pred HhccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC-CCcE
Confidence 34669999999999999875 6888899874 3 444 111121 23 54
Q ss_pred ----CCHHHH--HHHh--CCeEEEEeCCCCC-CCCCCCCceeeCCCCCC
Q 039859 232 ----DVYFGL--IYRF--GLDAIISVQPGNG-PLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ----D~~~d~--A~~A--G~~t~~v~R~gn~-~~~~~~~~~~i~sf~el 271 (271)
|+..++ |++| ||+++++.|. +. +.+ .+...|+|+.||
T Consensus 149 v~vgDs~~di~aA~~a~~Gi~~i~~~~~-~~~~~~--~~~~~~~~~~~~ 194 (197)
T PHA02597 149 CFVDDLAHNLDAAHEALSQLPVIHMLRG-ERDHIP--KLAHRVKSWNDI 194 (197)
T ss_pred EEeCCCHHHHHHHHHHHcCCcEEEecch-hhcccc--chhhhhccHHHH
Confidence 999999 9999 9999999874 32 222 224566776553
No 76
>PRK08324 short chain dehydrogenase; Validated
Probab=98.62 E-value=2.6e-08 Score=101.96 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCC----------------------CccCCCCCCCCCCcccccccCCcEEEeccchHHHHHHHHH-----
Q 039859 1 MEPENTCVLSGDG----------------------TILSLPSRKPYPHKPTYETSNAGAGIHGHGIEYFLVTMIN----- 53 (271)
Q Consensus 1 l~peD~~vvD~~G----------------------~~l~~~~~~ps~~~~iYr~~~agAVlHtHS~~at~~s~~~----- 53 (271)
|+|+||++||+++ ....++ .+||+|+++.+.....+|+||||+++|++|.+.
T Consensus 69 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pS~e~~lH~~i~~~~V~HtH~~~~~a~s~~~~~~~~ 147 (681)
T PRK08324 69 ITAAGFAALRLDPLRALKELGVLSDDEMVAYLRHCLFDPNA-PAPSIETLLHAFLPFKHVDHTHPDAIIAIANAPDGEEL 147 (681)
T ss_pred ccccCCCeeeHHHHHhhhccCCcchHHHHHHHHhhccCCCC-CCCchhHHHHhhcCCCEEEecCchHHHHHHcCCCHHHH
Confidence 6899999999883 333333 589999985554334569999999999998652
Q ss_pred ----hCCceEEE------------------eecCCccEEEeeCc---cccccc
Q 039859 54 ----LMSKEFQI------------------KAYPKTTAVLVPNH---VWRAGE 81 (271)
Q Consensus 54 ----~~~~~~~~------------------~~~p~~~avLir~H---~WG~~~ 81 (271)
.++ .+.+ +..|+..++||+|| +||+|+
T Consensus 148 ~~~~~~~-~v~~~py~~pg~~l~~~~~~~~~~~~~~~~~lL~nHG~~~~G~~~ 199 (681)
T PRK08324 148 TREIFGD-RVGWVPYVRPGFDLALAIAEAVRANPGAEGVVLGKHGLFTWGDTA 199 (681)
T ss_pred HHHHcCC-ceEEcCccCCChHHHHHHHHHHHhCCCCcEEEECCCCCeeccCCH
Confidence 122 3443 44567889999999 999995
No 77
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.56 E-value=1.1e-07 Score=81.26 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=62.5
Q ss_pred hhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC---C-----------------------ccc--------------
Q 039859 181 FESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS---T-----------------------FIS-------------- 220 (271)
Q Consensus 181 y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---~-----------------------yFD-------------- 220 (271)
|........+|||+.++|++|+++|++++|+||++. + .||
T Consensus 18 ~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 97 (176)
T TIGR00213 18 YVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEE 97 (176)
T ss_pred CCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCccccc
Confidence 333334567999999999999999999999999982 0 122
Q ss_pred ----------cccccc-----cC-CCC------CCHHHH--HHHhCCeE-EEEeCCCCC--CCCCCCCceeeCCCCCC
Q 039859 221 ----------LAASYF-----LS-KEI------DVYFGL--IYRFGLDA-IISVQPGNG--PLPESRGFKTINSFAGI 271 (271)
Q Consensus 221 ----------~~~sy~-----l~-~p~------D~~~d~--A~~AG~~t-~~v~R~gn~--~~~~~~~~~~i~sf~el 271 (271)
.+..|. ++ +|+ |+..|+ |++||+++ ++|.+ |.. ......++.+++|+.||
T Consensus 98 ~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~-g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 98 FRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRT-GKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred ccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEec-CCcccccccccCCEEeccHHHh
Confidence 011111 23 454 999999 99999998 67766 432 22223478899998875
No 78
>PRK06769 hypothetical protein; Validated
Probab=98.52 E-value=9e-08 Score=82.00 Aligned_cols=84 Identities=10% Similarity=0.019 Sum_probs=58.4
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC---------------------Cccc--c-c----cccc------------
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS---------------------TFIS--L-A----ASYF------------ 226 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---------------------~yFD--~-~----~sy~------------ 226 (271)
...+||||.++|++|+++|++++|+||++. .||. . . ...+
T Consensus 26 ~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 26 SFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999999862 2222 1 0 1111
Q ss_pred cC-CCC------CCHHHH--HHHhCCeEEEEeCC-CCC-------CCCCCCCceeeCCCCC
Q 039859 227 LS-KEI------DVYFGL--IYRFGLDAIISVQP-GNG-------PLPESRGFKTINSFAG 270 (271)
Q Consensus 227 l~-~p~------D~~~d~--A~~AG~~t~~v~R~-gn~-------~~~~~~~~~~i~sf~e 270 (271)
++ .|+ |+..|+ |++||++++++.|. +.. .+....+..++++|.|
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~e 166 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFED 166 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHH
Confidence 23 454 999999 99999999999983 331 1212335667777655
No 79
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.45 E-value=2.3e-06 Score=73.88 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=26.1
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..++.|++.++|+.|+++|++++|+||++.
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~ 133 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPR 133 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCH
Confidence 445666679999999999999999999987
No 80
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.44 E-value=9.5e-07 Score=72.87 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=27.3
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
....+||+.++|+.|+++|++++|+||++.
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~ 91 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSL 91 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCch
Confidence 445789999999999999999999999987
No 81
>PLN02954 phosphoserine phosphatase
Probab=98.34 E-value=1.8e-06 Score=75.65 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=27.5
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+||++.++|+.++++|++++|+||+..
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~ 111 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFR 111 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcH
Confidence 56999999999999999999999999987
No 82
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.29 E-value=8.1e-07 Score=76.05 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=60.0
Q ss_pred hhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------------------C-ccc----c-------cc
Q 039859 181 FESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------------------T-FIS----L-------AA 223 (271)
Q Consensus 181 y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------------------~-yFD----~-------~~ 223 (271)
|....-...+|||+.++|++|+++|++++|+||++. + +|+ . ..
T Consensus 21 ~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~ 100 (181)
T PRK08942 21 YVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCD 100 (181)
T ss_pred ccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCc
Confidence 443334567999999999999999999999999961 1 244 0 01
Q ss_pred ccc------------cC-CCC------CCHHHH--HHHhCCeEEEEeCCCCC--CCCCCCC--ceeeCCCCC
Q 039859 224 SYF------------LS-KEI------DVYFGL--IYRFGLDAIISVQPGNG--PLPESRG--FKTINSFAG 270 (271)
Q Consensus 224 sy~------------l~-~p~------D~~~d~--A~~AG~~t~~v~R~gn~--~~~~~~~--~~~i~sf~e 270 (271)
..+ ++ .|+ |+..|+ |++||+.++++.+ |.. ......+ ..+++++.+
T Consensus 101 ~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~-g~~~~~~~~~~~~~~~ii~~l~e 171 (181)
T PRK08942 101 CRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRT-GKGVTTLAEGAAPGTWVLDSLAD 171 (181)
T ss_pred CCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcC-CCCchhhhcccCCCceeecCHHH
Confidence 111 23 454 999999 9999998888865 332 1112223 667787765
No 83
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=98.28 E-value=1.1e-06 Score=90.30 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=56.5
Q ss_pred CCCCceEEEeCCC------------------------CccCCCCCCCCCCcccccccCCcEEEeccchHHHHHHHHH---
Q 039859 1 MEPENTCVLSGDG------------------------TILSLPSRKPYPHKPTYETSNAGAGIHGHGIEYFLVTMIN--- 53 (271)
Q Consensus 1 l~peD~~vvD~~G------------------------~~l~~~~~~ps~~~~iYr~~~agAVlHtHS~~at~~s~~~--- 53 (271)
|+++||..||+++ .+.+++ .+||+|+++-..-..++|.||||.+++.++...
T Consensus 55 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~PS~Et~lH~~i~~~~v~HtH~~~~~a~a~~~~~~ 133 (676)
T TIGR02632 55 MTAANFAGLRLDKLRPLKERYPGVETEDEMVAYLPHCLFNLNG-RAPSIDTPLHAFVPFKHVDHMHPDAIIALACAENGR 133 (676)
T ss_pred ccccCCceEechHHHHHhhhccccCCHHHHHHHHHhcccCCCC-CCCCccHHHHhhcccceEEecCchHHHHHhcCccHH
Confidence 6799999999984 444443 589998883222113568899999999988441
Q ss_pred ------hCCceEEE------------------eecCCccEEEeeCc---cccccc
Q 039859 54 ------LMSKEFQI------------------KAYPKTTAVLVPNH---VWRAGE 81 (271)
Q Consensus 54 ------~~~~~~~~------------------~~~p~~~avLir~H---~WG~~~ 81 (271)
.++ .+.+ +..|+..|+||+|| +||+|+
T Consensus 134 ~~~~~~~g~-~v~~vpy~~pG~~La~~~~~~~~~~~~~~~vll~~HGl~~~G~~~ 187 (676)
T TIGR02632 134 ELTEEIFGD-EVVWVPWRRPGFQLGLDIAAQVDANPQAKGVVLEGHGLVVWGDTA 187 (676)
T ss_pred HHHHHHcCC-eEEEeccccCChHHHHHHHHHHHhCCCCcEEEEcCCCeEEecCCH
Confidence 122 3443 35677799999999 999996
No 84
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.15 E-value=2.9e-06 Score=70.46 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=26.5
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
..+|||+.++|+.|+++|++++|+||++
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999987
No 85
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.10 E-value=3.8e-06 Score=67.91 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=52.1
Q ss_pred hhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCC--------C-----------Cccc-----------cccccc----
Q 039859 181 FESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLT--------S-----------TFIS-----------LAASYF---- 226 (271)
Q Consensus 181 y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs--------~-----------~yFD-----------~~~sy~---- 226 (271)
|.+......+||++.++|+.|+++|++++|+||++ . -+|+ .+..|.
T Consensus 17 ~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~KP~~~~~~~~~~ 96 (132)
T TIGR01662 17 YVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACPHCRKPKPGMFLEALK 96 (132)
T ss_pred CCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCChHHHHHHHH
Confidence 44444456799999999999999999999999998 3 1122 122222
Q ss_pred -c-C-CCC------C-CHHHH--HHHhCCeEEEEeC
Q 039859 227 -L-S-KEI------D-VYFGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 227 -l-~-~p~------D-~~~d~--A~~AG~~t~~v~R 250 (271)
+ + +|+ | ...|+ |+++|++++++.|
T Consensus 97 ~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 97 RFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred HcCCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence 4 3 454 8 68998 9999999999865
No 86
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.01 E-value=3.1e-05 Score=67.55 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=27.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+++||+.++|+.|+++|++++|+||++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~ 112 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFD 112 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcH
Confidence 46999999999999999999999999976
No 87
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.96 E-value=6.6e-05 Score=64.06 Aligned_cols=29 Identities=21% Similarity=-0.024 Sum_probs=27.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.++|||+.++|+.++++|++++|+||+..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~ 107 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIM 107 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcH
Confidence 47999999999999999999999999976
No 88
>PRK11590 hypothetical protein; Provisional
Probab=97.95 E-value=4.1e-05 Score=67.32 Aligned_cols=38 Identities=18% Similarity=0.066 Sum_probs=31.6
Q ss_pred HHHHhhhcCcccccCCCCHHHHH-HHHHHcCCeEEEEeCCCC
Q 039859 176 IWRTGFESNELEGEVFDDVPEAL-EKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 176 iw~~~y~~g~~~~~~ypdv~~~L-~~l~~~G~~l~i~Ssgs~ 216 (271)
.|++.|... ..+||++.+.| +.++++|++++|+||++.
T Consensus 85 ~f~~~~~~~---~~~~pga~e~L~~~l~~~G~~l~IvSas~~ 123 (211)
T PRK11590 85 DFVRWFRDN---VTAFPVVQERLTTYLLSSDADVWLITGSPQ 123 (211)
T ss_pred HHHHHHHHh---CcCCccHHHHHHHHHHhCCCEEEEEeCCcH
Confidence 477767543 56799999999 578889999999999987
No 89
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.93 E-value=3.7e-05 Score=69.71 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=56.2
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------------Cccc----cccccc------cCCC--C
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------------TFIS----LAASYF------LSKE--I 231 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------------~yFD----~~~sy~------l~~p--~ 231 (271)
.+...+.+||++.++|+.|+++|++++++||.+. .+|+ ....++ +... .
T Consensus 108 ~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l~~~~i~ 187 (237)
T PRK11009 108 GWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWLKKKNIR 187 (237)
T ss_pred cccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHHHhcCCe
Confidence 4466688999999999999999999999999642 2333 111121 1111 1
Q ss_pred ----CCHHHH--HHHhCCeEEEEeC-C--CCCCCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQ-P--GNGPLPESR 260 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R-~--gn~~~~~~~ 260 (271)
|+..|+ |++||++++.|.| + .+.|+|..+
T Consensus 188 I~IGDs~~Di~aA~~AGi~~I~v~~G~~~~~~~~~~~g 225 (237)
T PRK11009 188 IFYGDSDNDITAAREAGARGIRILRAANSTYKPLPQAG 225 (237)
T ss_pred EEEcCCHHHHHHHHHcCCcEEEEecCCCCCCCcccccc
Confidence 999999 9999999999999 3 344666544
No 90
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.93 E-value=9.5e-06 Score=70.23 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=50.9
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCC-CC----------------------Cccc-----ccccc--------c-c
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSL-TS----------------------TFIS-----LAASY--------F-L 227 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssg-s~----------------------~yFD-----~~~sy--------~-l 227 (271)
....++||||.++|+.|+++|++++|+||+ +. .||| +.... + +
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 345789999999999999999999999988 43 4566 11111 1 1
Q ss_pred ------C-CCC------CCHHHH--HHHhCCeEEEEeC
Q 039859 228 ------S-KEI------DVYFGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 228 ------~-~p~------D~~~d~--A~~AG~~t~~v~R 250 (271)
+ +|+ |++.|+ |++||+.++++.+
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~ 158 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPS 158 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCC
Confidence 2 355 999999 9999999999966
No 91
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.93 E-value=3.1e-05 Score=68.22 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=27.8
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+|||+.++|+.++++|++++|+|||..
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~ 101 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMD 101 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcH
Confidence 67999999999999999999999999987
No 92
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.92 E-value=1.4e-05 Score=68.14 Aligned_cols=30 Identities=23% Similarity=0.032 Sum_probs=27.3
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
-...+||||.++|++|+++|++++|+||++
T Consensus 26 ~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 26 EKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred HHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 346799999999999999999999999974
No 93
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.89 E-value=2e-05 Score=67.34 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=49.6
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCC-C-------Cccc----------cccccc-----cC-CCC------CCH-HH
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLT-S-------TFIS----------LAASYF-----LS-KEI------DVY-FG 236 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs-~-------~yFD----------~~~sy~-----l~-~p~------D~~-~d 236 (271)
..+||++.++|++|+++|++++|+||++ . ..|+ .+..|. ++ +|+ |+. .|
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~D 121 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTD 121 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCCHHHEEEECCcchHH
Confidence 4689999999999999999999999998 3 2222 112222 23 454 997 58
Q ss_pred H--HHHhCCeEEEEeCCC
Q 039859 237 L--IYRFGLDAIISVQPG 252 (271)
Q Consensus 237 ~--A~~AG~~t~~v~R~g 252 (271)
+ |+++||++++|.+.+
T Consensus 122 i~aA~~aGi~~i~v~~g~ 139 (170)
T TIGR01668 122 VMGGNRNGSYTILVEPLV 139 (170)
T ss_pred HHHHHHcCCeEEEEccCc
Confidence 8 999999999998743
No 94
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.87 E-value=1.8e-05 Score=66.61 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.1
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
...+|||+.++|+ +++|+||++.
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~ 110 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASH 110 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCH
Confidence 4569999999999 3899999987
No 95
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.77 E-value=8.5e-05 Score=67.30 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=56.1
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCC----C-------------Cccc-----cc-cccc------cCCC--C
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLT----S-------------TFIS-----LA-ASYF------LSKE--I 231 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs----~-------------~yFD-----~~-~sy~------l~~p--~ 231 (271)
.+.-...++|++.++|+.++++|++++|+||+. . .||+ +. ..++ +... .
T Consensus 108 ~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~i~ 187 (237)
T TIGR01672 108 GWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKNIR 187 (237)
T ss_pred hcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCCCe
Confidence 445667788889999999999999999999982 2 4555 11 1111 1111 1
Q ss_pred ----CCHHHH--HHHhCCeEEEEeC-CC--CCCCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQ-PG--NGPLPESR 260 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R-~g--n~~~~~~~ 260 (271)
|+..|+ |++||++++.|.| ++ |.|+|..+
T Consensus 188 i~vGDs~~DI~aAk~AGi~~I~V~~g~~s~~~~~~~~g 225 (237)
T TIGR01672 188 IHYGDSDNDITAAKEAGARGIRILRASNSTYKPLPQAG 225 (237)
T ss_pred EEEeCCHHHHHHHHHCCCCEEEEEecCCCCCCCccccc
Confidence 999999 9999999999999 44 33666544
No 96
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.71 E-value=8e-05 Score=64.17 Aligned_cols=29 Identities=10% Similarity=-0.110 Sum_probs=26.7
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..++|||+.++|+.++++ ++++|+||+..
T Consensus 66 ~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~ 94 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRER-FQVVILSDTFY 94 (205)
T ss_pred hCCCCCCHHHHHHHHHhc-CCEEEEeCCcH
Confidence 356899999999999999 99999999987
No 97
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=97.65 E-value=0.00014 Score=63.80 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=28.2
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+++||+.++|+.++++|++++|+||+..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~ 97 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMD 97 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcH
Confidence 368999999999999999999999999987
No 98
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.61 E-value=0.0018 Score=58.24 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=50.3
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC--------------Cccc---------------cccccc-----cC-CC
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS--------------TFIS---------------LAASYF-----LS-KE 230 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------------~yFD---------------~~~sy~-----l~-~p 230 (271)
-...+.||+...++.|+..|+++++.||.+. ..|. +|..|. ++ .|
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~ 168 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPP 168 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCC
Confidence 3466889999999999999999999999966 2232 333332 44 44
Q ss_pred -C------CCHHHH--HHHhCCeEEEEeC
Q 039859 231 -I------DVYFGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 231 -~------D~~~d~--A~~AG~~t~~v~R 250 (271)
+ |++.-+ |++|||+.+++.=
T Consensus 169 ~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 169 PSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred ccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 5 888888 9999999999965
No 99
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.48 E-value=0.00017 Score=69.00 Aligned_cols=32 Identities=22% Similarity=-0.014 Sum_probs=28.7
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCC
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSL 214 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssg 214 (271)
....+..+|||+.++|++|+++|++++|+||+
T Consensus 24 ~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 24 DSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred cCcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 44455889999999999999999999999996
No 100
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.39 E-value=0.00027 Score=64.77 Aligned_cols=66 Identities=17% Similarity=0.046 Sum_probs=52.6
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------C-ccc-----c-cccc-------c-----------
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------T-FIS-----L-AASY-------F----------- 226 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~-yFD-----~-~~sy-------~----------- 226 (271)
.....+||++.++|++|+++|++++|+||++. + ||| + ...| +
T Consensus 183 ~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~ 262 (300)
T PHA02530 183 VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFW 262 (300)
T ss_pred cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHH
Confidence 45568999999999999999999999999987 5 888 2 0101 1
Q ss_pred -cC--CCC------CCHHHH--HHHhCCeEEEEeC
Q 039859 227 -LS--KEI------DVYFGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 227 -l~--~p~------D~~~d~--A~~AG~~t~~v~R 250 (271)
++ .|+ |+..|+ |++||+.+++|.|
T Consensus 263 ~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~ 297 (300)
T PHA02530 263 EKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAP 297 (300)
T ss_pred HHhccCceEEEEEcCcHHHHHHHHHhCCeEEEecC
Confidence 12 234 999999 9999999999976
No 101
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.31 E-value=0.0017 Score=61.28 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=27.5
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+++||+.+.|+.++++|++++|+|||..
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~ 208 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFT 208 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcc
Confidence 67999999999999999999999999975
No 102
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.24 E-value=0.002 Score=54.24 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=27.6
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+++|++.+.|+.|+++|++++|+||++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~ 99 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGND 99 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcH
Confidence 58999999999999999999999999976
No 103
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.19 E-value=0.0018 Score=54.10 Aligned_cols=29 Identities=14% Similarity=-0.079 Sum_probs=26.6
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+++|++.+.|+.++++|++++|+|++..
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~ 100 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFD 100 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcH
Confidence 34799999999999999999999999976
No 104
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=96.99 E-value=0.003 Score=55.84 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHhhhcCcccccCCCCHHHHHH-HHHHcCCeEEEEeCCCC
Q 039859 176 IWRTGFESNELEGEVFDDVPEALE-KWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 176 iw~~~y~~g~~~~~~ypdv~~~L~-~l~~~G~~l~i~Ssgs~ 216 (271)
-|.+.|... ..+||++.+.|+ .++++|.+++|+||+..
T Consensus 84 ~f~~~~~~~---~~l~pga~e~L~~~l~~~G~~v~IvSas~~ 122 (210)
T TIGR01545 84 DFVAAFRDK---VTAFPLVAERLRQYLESSDADIWLITGSPQ 122 (210)
T ss_pred HHHHHHHHh---CCCCccHHHHHHHHHHhCCCEEEEEcCCcH
Confidence 466656442 468999999996 78889999999999986
No 105
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.90 E-value=0.00069 Score=62.06 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC--------------Cccc--------c------cc--ccc-----cC-CCC--
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS--------------TFIS--------L------AA--SYF-----LS-KEI-- 231 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~--------------~yFD--------~------~~--sy~-----l~-~p~-- 231 (271)
-||++.++|+.|+++|. ++|.||+.. .||+ + |. .|. ++ .|+
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 48999999999999997 899999875 2233 0 00 011 22 444
Q ss_pred ----CCH-HHH--HHHhCCeEEEEeCC-CCC-CC--------CCCCCceeeCCCCCC
Q 039859 232 ----DVY-FGL--IYRFGLDAIISVQP-GNG-PL--------PESRGFKTINSFAGI 271 (271)
Q Consensus 232 ----D~~-~d~--A~~AG~~t~~v~R~-gn~-~~--------~~~~~~~~i~sf~el 271 (271)
|+. .|+ |++|||++++|.+. +.. .+ ....++.+++|+.+|
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 985 888 99999999999772 221 11 123478899998875
No 106
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.84 E-value=0.001 Score=60.43 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=51.9
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC------------Cccc-ccccc------------c-----cC-CCC---
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS------------TFIS-LAASY------------F-----LS-KEI--- 231 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~------------~yFD-~~~sy------------~-----l~-~p~--- 231 (271)
..-.+.+++.++|+++|.+|.+|+|+||... .||| ...|| + ++ .|+
T Consensus 110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~v 189 (237)
T KOG3085|consen 110 SAWKYLDGMQELLQKLRKKGTILGIISNFDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECV 189 (237)
T ss_pred cCceeccHHHHHHHHHHhCCeEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeE
Confidence 3455677788999999999999999999855 8999 44444 3 23 565
Q ss_pred ---CCHH-HH--HHHhCCeEEEEeCCCCC
Q 039859 232 ---DVYF-GL--IYRFGLDAIISVQPGNG 254 (271)
Q Consensus 232 ---D~~~-d~--A~~AG~~t~~v~R~gn~ 254 (271)
|+.. |+ |+++||++++|...-++
T Consensus 190 hIgD~l~nD~~gA~~~G~~ailv~~~~~~ 218 (237)
T KOG3085|consen 190 HIGDLLENDYEGARNLGWHAILVDNSITA 218 (237)
T ss_pred EecCccccccHhHHHcCCEEEEEccccch
Confidence 4443 35 99999999999865443
No 107
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.82 E-value=0.0011 Score=55.23 Aligned_cols=31 Identities=10% Similarity=-0.208 Sum_probs=27.9
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.....+|||+.++|+.|+ ++++++|+||++.
T Consensus 41 ~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~ 71 (148)
T smart00577 41 GVYVKKRPGVDEFLKRAS-ELFELVVFTAGLR 71 (148)
T ss_pred EEEEEECCCHHHHHHHHH-hccEEEEEeCCcH
Confidence 455779999999999998 6799999999988
No 108
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=96.75 E-value=0.0075 Score=52.09 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=53.6
Q ss_pred HHHHhhhcCcc-cccCCCCHHHHHHHHHHcCCeEEEEeCCCCC-ccc-c------------ccccc---c-C-----CCC
Q 039859 176 IWRTGFESNEL-EGEVFDDVPEALEKWHSLGTKCNGVSSLTST-FIS-L------------AASYF---L-S-----KEI 231 (271)
Q Consensus 176 iw~~~y~~g~~-~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~~-yFD-~------------~~sy~---l-~-----~p~ 231 (271)
+|+...+.+.+ ..+++||+.++|++|.+.|..+.++|+-+.. +.. . .-.|. + + ...
T Consensus 59 ~~~~~~~~~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~K~~v~~D 138 (191)
T PF06941_consen 59 LWRFYEEPGFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGDKTLVGGD 138 (191)
T ss_dssp HHHHHTSTTTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESSGGGC--S
T ss_pred HHHHHhChhhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecCCCeEecc
Confidence 45442223433 5689999999999999999888888887642 211 0 00111 1 1 122
Q ss_pred ----CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCC
Q 039859 232 ----DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAG 270 (271)
Q Consensus 232 ----D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~e 270 (271)
|++.-+ +.++|+++++..+|.|.... ....+.|-.|
T Consensus 139 vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~e 180 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEE 180 (191)
T ss_dssp EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTS
T ss_pred EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHH
Confidence 888888 88899999999999998543 4566666554
No 109
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.74 E-value=0.001 Score=60.45 Aligned_cols=82 Identities=10% Similarity=-0.040 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc--------cc----c----ccc-----cC-CCC---
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS--------LA----A----SYF-----LS-KEI--- 231 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD--------~~----~----sy~-----l~-~p~--- 231 (271)
.|+++.++++.|++.|++++|.||++. .||+ ++ . .|. ++ +|+
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 488999999999999999999999876 3444 11 0 111 23 454
Q ss_pred ---CCH-HHH--HHHhCCeEEEEeCCCCC----CCCCCCCceeeCCCCCC
Q 039859 232 ---DVY-FGL--IYRFGLDAIISVQPGNG----PLPESRGFKTINSFAGI 271 (271)
Q Consensus 232 ---D~~-~d~--A~~AG~~t~~v~R~gn~----~~~~~~~~~~i~sf~el 271 (271)
|+. .|+ |+++||++++|.+.... ......++.+++|+.||
T Consensus 201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el 250 (257)
T TIGR01458 201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHA 250 (257)
T ss_pred EECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHH
Confidence 885 888 99999999999773211 11223467788887653
No 110
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=96.70 E-value=0.0032 Score=48.80 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=29.0
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.....+||++.++|++|+++|++++|+||+..
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~ 51 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH
Confidence 34578999999999999999999999999876
No 111
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.51 E-value=0.0071 Score=52.83 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=30.0
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC---Cccc
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS---TFIS 220 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~---~yFD 220 (271)
+..+.|++.++|..|++.|+++.|+||-|- +||.
T Consensus 29 ~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~ 65 (181)
T COG0241 29 DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFT 65 (181)
T ss_pred HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCcc
Confidence 345889999999999999999999999765 7777
No 112
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=96.44 E-value=0.024 Score=48.60 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=28.4
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+...+||++.+.|+.++++|++++|+|++..
T Consensus 84 ~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~ 114 (202)
T TIGR01490 84 IESILYPEARDLIRWHKAEGHTIVLVSASLT 114 (202)
T ss_pred HHHhccHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 4567999999999999999999999999876
No 113
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.06 E-value=0.028 Score=50.68 Aligned_cols=62 Identities=6% Similarity=-0.071 Sum_probs=46.1
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc--------c-----------ccccc-----cC--C
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS--------L-----------AASYF-----LS--K 229 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD--------~-----------~~sy~-----l~--~ 229 (271)
..-|..++.|-.|+.++ ..++||+.. +.|| . +.+|. .+ +
T Consensus 100 kPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~ 177 (244)
T KOG3109|consen 100 KPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDS 177 (244)
T ss_pred CCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCC
Confidence 34556788888888874 899999977 6666 1 12222 12 5
Q ss_pred CC------CCHHHH--HHHhCCeEEEEeCCC
Q 039859 230 EI------DVYFGL--IYRFGLDAIISVQPG 252 (271)
Q Consensus 230 p~------D~~~d~--A~~AG~~t~~v~R~g 252 (271)
|. |+..-+ |++.||+|+++.|.-
T Consensus 178 p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 178 PRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred cCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 65 999999 999999999999954
No 114
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.93 E-value=0.0079 Score=51.32 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+|||+.++|++|+++|++++|+||++.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 799999999999999999999999863
No 115
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=95.87 E-value=0.018 Score=55.11 Aligned_cols=34 Identities=18% Similarity=-0.027 Sum_probs=29.7
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+-+.....+|++.+.|++|+++|++++|+||++.
T Consensus 178 dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~ 211 (343)
T TIGR02244 178 NPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDY 211 (343)
T ss_pred CHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCH
Confidence 4444467799999999999999999999999877
No 116
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.037 Score=49.19 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=27.6
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+++|++.+.++.++++|.++.|+|.|..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~ 104 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFT 104 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChH
Confidence 78999999999999999999999999966
No 117
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.64 E-value=0.0089 Score=55.99 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=27.6
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+.+||++.++|++|+++|++++|+||++.
T Consensus 29 ~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~ 58 (320)
T TIGR01686 29 LSPLHKTLQEKIKTLKKQGFLLALASKNDE 58 (320)
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEcCCCH
Confidence 456799999999999999999999999986
No 118
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.00 E-value=0.029 Score=43.98 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=25.1
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..++||+.++|++|+++|++++++||.|.
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~ 41 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSS 41 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SS
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45899999999999999999999999974
No 119
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.98 E-value=0.025 Score=48.61 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCeEEEEeCCCC-------------Cccc----cccccc-----cC-CCC------CCHHHH--HHHhCC
Q 039859 195 PEALEKWHSLGTKCNGVSSLTS-------------TFIS----LAASYF-----LS-KEI------DVYFGL--IYRFGL 243 (271)
Q Consensus 195 ~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD----~~~sy~-----l~-~p~------D~~~d~--A~~AG~ 243 (271)
..+++.|+++|++++|+||++. .||+ .+..|. ++ +|+ |+..|+ ++.+|+
T Consensus 40 ~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~ 119 (169)
T TIGR02726 40 GMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGL 119 (169)
T ss_pred HHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCC
Confidence 3578999999999999999987 5666 222232 33 454 999999 999999
Q ss_pred eEEEE
Q 039859 244 DAIIS 248 (271)
Q Consensus 244 ~t~~v 248 (271)
..+..
T Consensus 120 ~~am~ 124 (169)
T TIGR02726 120 AVAVG 124 (169)
T ss_pred eEECc
Confidence 88844
No 120
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.97 E-value=0.029 Score=50.19 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=27.2
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+||++.++|++|+++|++++|+||+++
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~ 51 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPR 51 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56899999999999999999999999876
No 121
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.95 E-value=0.015 Score=47.26 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=26.2
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCC-CC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSL-TS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssg-s~ 216 (271)
.+|||+.++|+.|+++|++++|+||+ +.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~ 57 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDP 57 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCH
Confidence 58999999999999999999999999 44
No 122
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=94.93 E-value=0.024 Score=47.48 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHHcCCeEEEEeCCCC-------------Ccccc----ccccc-----cC-CCC------CCHHHH--HHHhCCeE
Q 039859 197 ALEKWHSLGTKCNGVSSLTS-------------TFISL----AASYF-----LS-KEI------DVYFGL--IYRFGLDA 245 (271)
Q Consensus 197 ~L~~l~~~G~~l~i~Ssgs~-------------~yFD~----~~sy~-----l~-~p~------D~~~d~--A~~AG~~t 245 (271)
+|++|+++|++++|+||++. .||+. +..+. ++ +|+ |+..|+ ++++|+.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~- 114 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS- 114 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe-
Confidence 89999999999999999987 55661 11121 23 444 999999 9999997
Q ss_pred EEE
Q 039859 246 IIS 248 (271)
Q Consensus 246 ~~v 248 (271)
+.+
T Consensus 115 ~~v 117 (154)
T TIGR01670 115 VAV 117 (154)
T ss_pred Eec
Confidence 444
No 123
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=94.58 E-value=0.023 Score=57.11 Aligned_cols=59 Identities=19% Similarity=0.087 Sum_probs=45.3
Q ss_pred cccccCCCCHHHHHHHHHHcCC-eEEEEeCCCC-------------Ccccc--ccccc-----cC-CCC------CCHHH
Q 039859 185 ELEGEVFDDVPEALEKWHSLGT-KCNGVSSLTS-------------TFISL--AASYF-----LS-KEI------DVYFG 236 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~-~l~i~Ssgs~-------------~yFD~--~~sy~-----l~-~p~------D~~~d 236 (271)
.+..++|||+.++|++|+++|+ +++++||++. .||.. +.... +. .++ |...|
T Consensus 358 ~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD 437 (536)
T TIGR01512 358 LLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELLPEDKLEIVKELREKYGPVAMVGDGIND 437 (536)
T ss_pred EEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3467899999999999999999 9999999877 56662 22211 22 333 99999
Q ss_pred H--HHHhCC
Q 039859 237 L--IYRFGL 243 (271)
Q Consensus 237 ~--A~~AG~ 243 (271)
+ +++||+
T Consensus 438 ~~al~~A~v 446 (536)
T TIGR01512 438 APALAAADV 446 (536)
T ss_pred HHHHHhCCE
Confidence 9 899995
No 124
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.56 E-value=0.033 Score=49.78 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-------cc--------cccc-----cC--CCC----
Q 039859 191 FDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-------LA--------ASYF-----LS--KEI---- 231 (271)
Q Consensus 191 ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-------~~--------~sy~-----l~--~p~---- 231 (271)
||++.++|+.++++|+++ |.||+.. .||. ++ ..|. ++ +++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 899999999999999997 8899876 2233 11 1111 23 233
Q ss_pred --CC-HHHH--HHHhCCeEEEEe
Q 039859 232 --DV-YFGL--IYRFGLDAIISV 249 (271)
Q Consensus 232 --D~-~~d~--A~~AG~~t~~v~ 249 (271)
|+ ..|+ |+++|+++++|.
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEe
Confidence 99 6899 999999999984
No 125
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=94.43 E-value=0.033 Score=49.07 Aligned_cols=80 Identities=8% Similarity=-0.029 Sum_probs=54.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc-----cc-cccc-------------c---C-CC-
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS-----LA-ASYF-------------L---S-KE- 230 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD-----~~-~sy~-------------l---~-~p- 230 (271)
.++||++.++|+.+++.| +++|+|||.. .+|. +. ..+. + . ..
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~ 145 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY 145 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCC
Confidence 468999999999999986 9999999977 3443 11 2221 1 1 11
Q ss_pred C-----CCHHHH--HHHhCCeEEEEeCCCCCCCCCCCCceeeCCCCC
Q 039859 231 I-----DVYFGL--IYRFGLDAIISVQPGNGPLPESRGFKTINSFAG 270 (271)
Q Consensus 231 ~-----D~~~d~--A~~AG~~t~~v~R~gn~~~~~~~~~~~i~sf~e 270 (271)
. |+..|+ ++.||+..++-..|.-... ...++++++.+|
T Consensus 146 ~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~~--~~~~~~~~~~~~ 190 (203)
T TIGR02137 146 RVIAAGDSYNDTTMLSEAHAGILFHAPENVIRE--FPQFPAVHTYED 190 (203)
T ss_pred CEEEEeCCHHHHHHHHhCCCCEEecCCHHHHHh--CCCCCcccCHHH
Confidence 1 999999 9999999998766542211 123666665544
No 126
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=94.38 E-value=0.047 Score=49.34 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=54.2
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCCCc----------------cc-------------cccccc-----cC-CCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTSTF----------------IS-------------LAASYF-----LS-KEI 231 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~~y----------------FD-------------~~~sy~-----l~-~p~ 231 (271)
...-|++...++..++ +|.+ +|.||....+ |+ .+..|+ ++ +|+
T Consensus 119 ~~~~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~ 196 (249)
T TIGR01457 119 RQIDYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTERE 196 (249)
T ss_pred CCCCHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcc
Confidence 3457888888898885 5776 8889986611 11 111111 22 444
Q ss_pred ------CCH-HHH--HHHhCCeEEEEeCCCCC--CCCC--CCCceeeCCCCCC
Q 039859 232 ------DVY-FGL--IYRFGLDAIISVQPGNG--PLPE--SRGFKTINSFAGI 271 (271)
Q Consensus 232 ------D~~-~d~--A~~AG~~t~~v~R~gn~--~~~~--~~~~~~i~sf~el 271 (271)
|+. .|+ |+++||++++|.|.... .+.. ..++.+++++.++
T Consensus 197 ~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 197 ETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred cEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 996 798 99999999999884322 1211 3467889998875
No 127
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=94.33 E-value=0.14 Score=47.52 Aligned_cols=30 Identities=10% Similarity=-0.055 Sum_probs=28.1
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..++.||+.++|+.|+++|++++|+|+|..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~ 148 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIG 148 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcH
Confidence 477899999999999999999999999986
No 128
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=94.32 E-value=0.033 Score=56.08 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=44.5
Q ss_pred ccccCCCCHHHHHHHHHHcC-CeEEEEeCCCC-------------Ccccc--ccccc-----cC-CCC------CCHHHH
Q 039859 186 LEGEVFDDVPEALEKWHSLG-TKCNGVSSLTS-------------TFISL--AASYF-----LS-KEI------DVYFGL 237 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G-~~l~i~Ssgs~-------------~yFD~--~~sy~-----l~-~p~------D~~~d~ 237 (271)
++.++|||+.++|++|+++| ++++|+||++. .||.. +.... +. .+. |...|+
T Consensus 381 ~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~ 460 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDA 460 (556)
T ss_pred ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHH
Confidence 35679999999999999999 99999999977 56662 11111 22 333 999998
Q ss_pred --HHHhCC
Q 039859 238 --IYRFGL 243 (271)
Q Consensus 238 --A~~AG~ 243 (271)
+++||+
T Consensus 461 ~al~~A~v 468 (556)
T TIGR01525 461 PALAAADV 468 (556)
T ss_pred HHHhhCCE
Confidence 899993
No 129
>KOG3699 consensus Cytoskeletal protein Adducin [Signal transduction mechanisms; Cytoskeleton]
Probab=94.24 E-value=0.058 Score=54.49 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCCceEEEeCCCCccCCCC-----CCC--CCCcccccc-cCCcEEEeccchHHHHHHHHHhCC----------ceEEE--
Q 039859 2 EPENTCVLSGDGTILSLPS-----RKP--YPHKPTYET-SNAGAGIHGHGIEYFLVTMINLMS----------KEFQI-- 61 (271)
Q Consensus 2 ~peD~~vvD~~G~~l~~~~-----~~p--s~~~~iYr~-~~agAVlHtHS~~at~~s~~~~~~----------~~~~~-- 61 (271)
+..-++.+|+.|++++.++ .++ .+|..+|.. |+++|+||.|+....++|-+.-|- +++..
T Consensus 93 tas~l~kv~~~g~iv~qgs~~~~vn~sgf~lhsai~~a~p~vrc~ihi~t~~~aavs~mk~gllp~s~~a~~lg~~~~~d 172 (598)
T KOG3699|consen 93 TASSLVKVNIQGEIVDQGSTNLGVNQSGFFLHSAIYAARPDVRCIIHIHTSAVAAVSSMKCGLLPLSQEALVLGEVAYYD 172 (598)
T ss_pred ccccceeecccchhhhcccccccccccccchhhhhhccCCceeEEEEeccchHHHHHHhhhcccccccccccccceeeee
Confidence 3456788999999998654 122 244559995 699999999998888877664110 01111
Q ss_pred ----------------eecCCccEEEeeCc---cccccc
Q 039859 62 ----------------KAYPKTTAVLVPNH---VWRAGE 81 (271)
Q Consensus 62 ----------------~~~p~~~avLir~H---~WG~~~ 81 (271)
...|. .-.+|||| +.|.+.
T Consensus 173 y~~~~e~~~~~~~~~~~lg~~-kvl~lrN~g~~~~g~t~ 210 (598)
T KOG3699|consen 173 YQGILEDEEERIPLQKNLGPK-KVLVLRNHGVVSVGETV 210 (598)
T ss_pred cccccccchhhhhHHhhcCcc-ceEEEecccccccchhH
Confidence 33355 88999999 899884
No 130
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=93.92 E-value=0.11 Score=44.97 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=21.8
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++.....+||||+..|+.|+.+|+++++.|.-+.
T Consensus 39 ~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~ 72 (169)
T PF12689_consen 39 SRGEEVSLYPDVPEILQELKERGVKLAVASRTDE 72 (169)
T ss_dssp TT--EE---TTHHHHHHHHHHCT--EEEEE--S-
T ss_pred CCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCC
Confidence 4555677999999999999999999999996544
No 131
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=93.68 E-value=0.078 Score=45.87 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC-------Cccc--------cccccc-------cC-CCC------CCHH-HH--
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS-------TFIS--------LAASYF-------LS-KEI------DVYF-GL-- 237 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------~yFD--------~~~sy~-------l~-~p~------D~~~-d~-- 237 (271)
.=|.+.+-+..++++|+++.|+||++. .-|| .|.++. ++ +|+ |... |+
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlg 126 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLG 126 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhc
Confidence 445667788889999999999999976 3333 222222 23 444 5444 34
Q ss_pred HHHhCCeEEEEe
Q 039859 238 IYRFGLDAIISV 249 (271)
Q Consensus 238 A~~AG~~t~~v~ 249 (271)
++.+||+|++|.
T Consensus 127 gnr~G~~tIlV~ 138 (175)
T COG2179 127 GNRAGMRTILVE 138 (175)
T ss_pred ccccCcEEEEEE
Confidence 999999999995
No 132
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=93.60 E-value=0.063 Score=50.41 Aligned_cols=26 Identities=15% Similarity=-0.124 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 191 FDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 191 ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-|++.++|++|+++|++++|+|||++
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~R 175 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNR 175 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCCh
Confidence 58999999999999999999999977
No 133
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=93.58 E-value=0.15 Score=46.23 Aligned_cols=30 Identities=17% Similarity=-0.002 Sum_probs=26.8
Q ss_pred cccCCCCHHHHHHHH--HHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKW--HSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l--~~~G~~l~i~Ssgs~ 216 (271)
..++.|++.++|+.+ ++.|+.++|+|.+..
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs 100 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANS 100 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcH
Confidence 478999999999999 568999999999966
No 134
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=92.73 E-value=0.1 Score=49.06 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=41.2
Q ss_pred HHHHHHhhhhccchhhHHHHHHHHHHHh----hh-cCccccc-----C-CCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 153 VANVDAMIKADRKITALKQLQGHIWRTG----FE-SNELEGE-----V-FDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 153 ~~~v~~~i~~DrK~~~LK~LQG~iw~~~----y~-~g~~~~~-----~-ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+-+++|.-.|--.-..-...+..|.-. |. .|.+-.. + -|++.++|++|+++|++++|+||+++
T Consensus 99 y~~L~EW~v~~~~~v~~l~~~~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~R 173 (301)
T TIGR01684 99 YACLNEWYVFELEEIYNLNLPSKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDR 173 (301)
T ss_pred HHHHHHHHcccHhhhhhccccccccccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 4445666655544333222256666531 11 3333222 2 49999999999999999999999988
No 135
>COG3347 Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=0.12 Score=49.77 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=43.0
Q ss_pred CCCCCCCcccccccCCcEEEeccchHHHHHHHHH---------hCCceEE----------E--------eecCCccEEEe
Q 039859 20 SRKPYPHKPTYETSNAGAGIHGHGIEYFLVTMIN---------LMSKEFQ----------I--------KAYPKTTAVLV 72 (271)
Q Consensus 20 ~~~ps~~~~iYr~~~agAVlHtHS~~at~~s~~~---------~~~~~~~----------~--------~~~p~~~avLi 72 (271)
..+||.||++--.-.-.-|.|||+.....++.-. .|. .+. + +++|+..++++
T Consensus 110 ~PrPSIET~LHAflP~k~VdHtH~dAiiaIa~~~n~~~l~~~I~Gd-~~~~vPYvrPGf~La~~iae~~~~~p~~~glvL 188 (404)
T COG3347 110 APRPSIETLLHAFLPFKVVDHTHADAIIAIAVQANGKALIREIFGD-RVVWVPYVRPGFPLAKAIAERFKANPDAEGLVL 188 (404)
T ss_pred CCCcchhhhhHhhcCcccccccCccceeeeccCCCHHHHHHHhcCC-eEEEEeccCCCchHHHHHHHHHhhCCCceEEEe
Confidence 3578999987665456779999998765533221 122 222 2 77899999999
Q ss_pred eCc---ccccc
Q 039859 73 PNH---VWRAG 80 (271)
Q Consensus 73 r~H---~WG~~ 80 (271)
.|| +||++
T Consensus 189 ~~HGL~t~gdt 199 (404)
T COG3347 189 ENHGLFTFGDT 199 (404)
T ss_pred ccccceEeccc
Confidence 999 99999
No 136
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=91.68 E-value=0.19 Score=43.23 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCeEEEEeCCCC-------------Cccc--cc--cccc-----cC-CCC------CCHHHH--HHHhCCe
Q 039859 196 EALEKWHSLGTKCNGVSSLTS-------------TFIS--LA--ASYF-----LS-KEI------DVYFGL--IYRFGLD 244 (271)
Q Consensus 196 ~~L~~l~~~G~~l~i~Ssgs~-------------~yFD--~~--~sy~-----l~-~p~------D~~~d~--A~~AG~~ 244 (271)
.+++.|+++|++++|+||++. .||+ +. ..+. ++ .|+ |+..|+ |++||+.
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQGQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 478889999999999999976 4565 11 2222 34 554 999999 9999999
Q ss_pred EE
Q 039859 245 AI 246 (271)
Q Consensus 245 t~ 246 (271)
.+
T Consensus 135 ~~ 136 (183)
T PRK09484 135 VA 136 (183)
T ss_pred Ee
Confidence 54
No 137
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=91.47 E-value=0.2 Score=50.63 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+||+|+++|++|+++|++++|+||.+.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 699999999999999999999999755
No 138
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=91.37 E-value=0.18 Score=42.78 Aligned_cols=31 Identities=13% Similarity=-0.129 Sum_probs=27.5
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+....=|++.++|++|.+. +.++|+||++.
T Consensus 38 ~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~ 68 (162)
T TIGR02251 38 PVYVFKRPHVDEFLERVSKW-YELVIFTASLE 68 (162)
T ss_pred EEEEEECCCHHHHHHHHHhc-CEEEEEcCCcH
Confidence 44566789999999999987 99999999988
No 139
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=91.29 E-value=0.073 Score=49.29 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 164 RKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 164 rK~~~LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+...-|=.|.|-+|+- ...||++.++|++|+++|.++..+||.|.
T Consensus 7 ~y~~~l~DlDGvl~~G--------~~~ipga~e~l~~L~~~g~~~iflTNn~~ 51 (269)
T COG0647 7 KYDGFLFDLDGVLYRG--------NEAIPGAAEALKRLKAAGKPVIFLTNNST 51 (269)
T ss_pred hcCEEEEcCcCceEeC--------CccCchHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3445566677777744 56999999999999999999999999986
No 140
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=90.98 E-value=0.21 Score=45.00 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 169 LKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 169 LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
|-.|.|-++-+.| .-|+..|+|++|+.++.++-.+||-+.
T Consensus 11 LlDlSGtLh~e~~--------avpga~eAl~rLr~~~~kVkFvTNttk 50 (262)
T KOG3040|consen 11 LLDLSGTLHIEDA--------AVPGAVEALKRLRDQHVKVKFVTNTTK 50 (262)
T ss_pred EEeccceEecccc--------cCCCHHHHHHHHHhcCceEEEEecCcc
Confidence 4455666666655 679999999999999999999999755
No 141
>PRK08238 hypothetical protein; Validated
Probab=90.63 E-value=0.51 Score=47.11 Aligned_cols=60 Identities=13% Similarity=-0.023 Sum_probs=45.0
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC----------Cccc-----c--cccc---c---c----CCC-----CCCHHH
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS----------TFIS-----L--AASY---F---L----SKE-----IDVYFG 236 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~----------~yFD-----~--~~sy---~---l----~~p-----~D~~~d 236 (271)
+++|++.+.|++++++|++++|+||++. +.|| + ...+ + + +.- .|+..|
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~~~~~~yvGDS~~D 151 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFGERGFDYAGNSAAD 151 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhCccCeeEecCCHHH
Confidence 5889999999999999999999999987 6688 1 1111 1 1 211 199999
Q ss_pred H--HHHhCCeEEEEe
Q 039859 237 L--IYRFGLDAIISV 249 (271)
Q Consensus 237 ~--A~~AG~~t~~v~ 249 (271)
+ ++.|| +.+.|+
T Consensus 152 lp~~~~A~-~av~Vn 165 (479)
T PRK08238 152 LPVWAAAR-RAIVVG 165 (479)
T ss_pred HHHHHhCC-CeEEEC
Confidence 9 88888 666554
No 142
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=90.25 E-value=0.25 Score=41.86 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
++|+|+++|++|++.|+++.|+||-+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~ 55 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQS 55 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-C
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCcc
Confidence 56789999999999999999999963
No 143
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=89.78 E-value=0.3 Score=41.36 Aligned_cols=32 Identities=13% Similarity=-0.142 Sum_probs=28.2
Q ss_pred CcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 184 NELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 184 g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
......+||++.++|+++++. +.++|+|||+.
T Consensus 53 ~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~ 84 (156)
T TIGR02250 53 MWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTR 84 (156)
T ss_pred eEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcH
Confidence 345678999999999999955 99999999998
No 144
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=89.62 E-value=0.26 Score=49.86 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=43.9
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC------------Cccccc--cccc-----cC-CCC------CCHHHH--H
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS------------TFISLA--ASYF-----LS-KEI------DVYFGL--I 238 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~------------~yFD~~--~sy~-----l~-~p~------D~~~d~--A 238 (271)
..+++||+.++|++|+++|++++++||++. +||.+. .... +. .++ |...|+ +
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al 482 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGINVRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPAL 482 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCcEEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHH
Confidence 677999999999999999999999999977 355521 1111 22 333 888998 8
Q ss_pred HHhCCe
Q 039859 239 YRFGLD 244 (271)
Q Consensus 239 ~~AG~~ 244 (271)
++||+.
T Consensus 483 ~~A~vg 488 (562)
T TIGR01511 483 AQADVG 488 (562)
T ss_pred hhCCEE
Confidence 999963
No 145
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=1.9 Score=37.65 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHcCCeEEEEeCCCC-------Cccc-cccccc----cC-----------C---C-C---CCHHHHHHHhC
Q 039859 193 DVPEALEKWHSLGTKCNGVSSLTS-------TFIS-LAASYF----LS-----------K---E-I---DVYFGLIYRFG 242 (271)
Q Consensus 193 dv~~~L~~l~~~G~~l~i~Ssgs~-------~yFD-~~~sy~----l~-----------~---p-~---D~~~d~A~~AG 242 (271)
+|...|..|++. .+|+-+|+-.. .||+ +.-+|. ++ . + + |+...+|++||
T Consensus 76 ~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih~~~l~i~g~h~KV~~vrth~idlf~ed~~~na~~iAk~~~ 154 (194)
T COG5663 76 LVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIHYDHLEIVGLHHKVEAVRTHNIDLFFEDSHDNAGQIAKNAG 154 (194)
T ss_pred HHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccchhhhhhhcccccchhhHhhccCccccccCchHHHHHHhcC
Confidence 567888888877 46777777654 5555 555554 11 0 0 1 55555599999
Q ss_pred CeEEEEeCCCCC-CC
Q 039859 243 LDAIISVQPGNG-PL 256 (271)
Q Consensus 243 ~~t~~v~R~gn~-~~ 256 (271)
++.+++.-|-|. |.
T Consensus 155 ~~vilins~ynRkp~ 169 (194)
T COG5663 155 IPVILINSPYNRKPA 169 (194)
T ss_pred CcEEEecCcccccch
Confidence 999999875554 44
No 146
>PLN02645 phosphoglycolate phosphatase
Probab=88.76 E-value=0.19 Score=46.88 Aligned_cols=39 Identities=8% Similarity=-0.049 Sum_probs=26.8
Q ss_pred CCH-HHH--HHHhCCeEEEEeCC-CCC-CCC----CCCCceeeCCCCC
Q 039859 232 DVY-FGL--IYRFGLDAIISVQP-GNG-PLP----ESRGFKTINSFAG 270 (271)
Q Consensus 232 D~~-~d~--A~~AG~~t~~v~R~-gn~-~~~----~~~~~~~i~sf~e 270 (271)
|+. .|+ |+++||++++|.+. ++. .+. ...++.+++++.+
T Consensus 255 D~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~ 302 (311)
T PLN02645 255 DRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISD 302 (311)
T ss_pred CCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHH
Confidence 996 898 99999999999762 221 111 1346778887754
No 147
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=88.55 E-value=0.35 Score=41.09 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=29.9
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
...+..+++||+.++|+.|+++|++++++|+.+.
T Consensus 121 ~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~ 154 (215)
T PF00702_consen 121 LFGLRDPLRPGAKEALQELKEAGIKVAILTGDNE 154 (215)
T ss_dssp EEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEH
T ss_pred EEeecCcchhhhhhhhhhhhccCcceeeeecccc
Confidence 5556778999999999999999999999997654
No 148
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=88.20 E-value=0.53 Score=34.37 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=29.1
Q ss_pred CC-HHHH--HHHhCCeEEEEeCCCCCCC-----CCCCCceeeCCCCCC
Q 039859 232 DV-YFGL--IYRFGLDAIISVQPGNGPL-----PESRGFKTINSFAGI 271 (271)
Q Consensus 232 D~-~~d~--A~~AG~~t~~v~R~gn~~~-----~~~~~~~~i~sf~el 271 (271)
|+ ..|+ |+++|+++++|.. |.... ....+..++++|.|+
T Consensus 29 D~~~~Di~~a~~~G~~~ilV~t-G~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 29 DSLETDIEAAKAAGIDTILVLT-GVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp SSTTTHHHHHHHTTSEEEEESS-SSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCcHhHHHHHHHcCCcEEEECC-CCCCHHHHhccCCCCCEEECCHHhC
Confidence 88 8888 9999999999977 33211 124578899998874
No 149
>PTZ00445 p36-lilke protein; Provisional
Probab=88.09 E-value=1.2 Score=40.12 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=25.6
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSL 214 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssg 214 (271)
.+..++=|+....++++++.|+++.|+|=.
T Consensus 71 ~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 71 RVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred hhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 455678889999999999999999999854
No 150
>COG4996 Predicted phosphatase [General function prediction only]
Probab=87.37 E-value=0.51 Score=39.62 Aligned_cols=44 Identities=23% Similarity=0.128 Sum_probs=36.6
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc----cccccc
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS----LAASYF 226 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD----~~~sy~ 226 (271)
++....++||+|.++|+.++..|+-++.+|=.-. .||+ +|.+|+
T Consensus 35 s~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K 95 (164)
T COG4996 35 SKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYK 95 (164)
T ss_pred CCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChh
Confidence 6777899999999999999999987777764332 8888 888886
No 151
>PLN02645 phosphoglycolate phosphatase
Probab=87.00 E-value=0.73 Score=42.97 Aligned_cols=42 Identities=29% Similarity=0.505 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 167 TALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 167 ~~LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.-+=.+.|-+|+. .++||++.++|++|+++|++++++||.+.
T Consensus 30 ~~~~D~DGtl~~~--------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~ 71 (311)
T PLN02645 30 TFIFDCDGVIWKG--------DKLIEGVPETLDMLRSMGKKLVFVTNNST 71 (311)
T ss_pred EEEEeCcCCeEeC--------CccCcCHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4445677888764 24899999999999999999999999875
No 152
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=1.7 Score=38.49 Aligned_cols=29 Identities=17% Similarity=-0.114 Sum_probs=26.4
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+-|+..|+.+..++++++.+|+|||--
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~ 100 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMD 100 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCc
Confidence 56788999999999999999999999975
No 153
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=86.05 E-value=0.97 Score=40.99 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++|++.++|++|+++|++++++||.+.
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~ 48 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTK 48 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCC
Confidence 899999999999999999999999865
No 154
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=84.77 E-value=1.1 Score=40.94 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=26.2
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
...||++.++|++|+++|++++++||.+.
T Consensus 17 ~~~~~ga~e~l~~L~~~g~~~~~~Tnns~ 45 (279)
T TIGR01452 17 ERVVPGAPELLDRLARAGKAALFVTNNST 45 (279)
T ss_pred CeeCcCHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34899999999999999999999999764
No 155
>PRK10671 copA copper exporting ATPase; Provisional
Probab=84.19 E-value=1.2 Score=47.26 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=44.2
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC-------------Cccc--cccccc-----cC-CCC------CCHHHH-
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS-------------TFIS--LAASYF-----LS-KEI------DVYFGL- 237 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~-------------~yFD--~~~sy~-----l~-~p~------D~~~d~- 237 (271)
+.-+++||+.++|++|+++|++++++|+.+. .+|. .+..+. +. .++ |...|+
T Consensus 647 l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~ 726 (834)
T PRK10671 647 IRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAP 726 (834)
T ss_pred ccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 3558899999999999999999999999877 3444 222211 23 443 999999
Q ss_pred -HHHhCC
Q 039859 238 -IYRFGL 243 (271)
Q Consensus 238 -A~~AG~ 243 (271)
+++||+
T Consensus 727 al~~Agv 733 (834)
T PRK10671 727 ALAQADV 733 (834)
T ss_pred HHHhCCe
Confidence 899999
No 156
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=82.96 E-value=2 Score=39.63 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 176 IWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 176 iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-|.+.... ....++||+.++|+.++++|++++++||.+.
T Consensus 107 ~w~~wv~~--~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~ 145 (266)
T TIGR01533 107 TWDKWVQA--AQAKPVAGALDFLNYANSKGVKIFYVSNRSE 145 (266)
T ss_pred HHHHHHHc--CCCCcCccHHHHHHHHHHCCCeEEEEeCCCc
Confidence 56554444 3567999999999999999999999999874
No 157
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=81.33 E-value=2.7 Score=37.54 Aligned_cols=47 Identities=15% Similarity=0.023 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 170 KQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 170 K~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+=|||..=.--|---..+.++-||+++...+||++|.++|++|.|-+
T Consensus 69 ~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~ 115 (227)
T KOG1615|consen 69 SLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFR 115 (227)
T ss_pred HHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChH
Confidence 33444444333444455788999999999999999999999999977
No 158
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=79.80 E-value=2.2 Score=38.45 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=24.8
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
..+|++.++|++|+++|+++.++||.+
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~ 43 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNS 43 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 468999999999999999999999965
No 159
>PRK10444 UMP phosphatase; Provisional
Probab=79.38 E-value=2.3 Score=38.48 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=26.4
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.++|++.++|++|+++|+++.++||.+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~ 44 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPS 44 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5799999999999999999999999876
No 160
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=78.07 E-value=0.82 Score=38.61 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=25.5
Q ss_pred cceecccCcch-HHHHHHHHHHHHhhccCCcchHHHHHHHHH
Q 039859 82 VISRQLNGLTS-ASADSNKVEKHLSATHETAGTKGDIKILQS 122 (271)
Q Consensus 82 vil~DiEGTt~-is~~~~~l~~~l~~~~~~~e~~~~i~~l~~ 122 (271)
++++|||||++ ... ..++-.++.++|-.+.+.+.+..+++
T Consensus 1 iVisDIDGTL~~sd~-~~~~~~~~~~~~~~~~~~~a~~~l~~ 41 (157)
T smart00775 1 IVISDIDGTITKSDV-LGHVVPIIGKDWTHPGVAKLYRDIQN 41 (157)
T ss_pred CEEEecCCCCccccc-ccccccccccCcCCHHHHHHHHHHHH
Confidence 47899999999 441 12222234456777777777766664
No 161
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=73.43 E-value=4.5 Score=36.07 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=26.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+||++.++|+.++++|+++.++||.+.
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~ 41 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNSS 41 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCCC
Confidence 35799999999999999999999999874
No 162
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=73.42 E-value=3.1 Score=38.98 Aligned_cols=27 Identities=15% Similarity=-0.113 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.-|.|.+.|.+|++.|..|+..|.|++
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~ 169 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNR 169 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCH
Confidence 458899999999999999999999998
No 163
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=72.29 E-value=2.7 Score=35.06 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 192 DDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 192 pdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
|++.+.|+.++++|++++|+|.+..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~ 116 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPD 116 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcH
Confidence 4444999999999999999999864
No 164
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=72.18 E-value=12 Score=35.46 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=26.1
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-+||++.+.++.++++|+.+.|.|||+.
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 3689999999999999999999999976
No 165
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=67.38 E-value=3.5 Score=35.24 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred cceecccCcchHHHHHHHHHHHHhhccCCcchHHHHHHHHH
Q 039859 82 VISRQLNGLTSASADSNKVEKHLSATHETAGTKGDIKILQS 122 (271)
Q Consensus 82 vil~DiEGTt~is~~~~~l~~~l~~~~~~~e~~~~i~~l~~ 122 (271)
+++.|||||+|.|-+..++-..+-..|..+-+.+.+..+.+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~ 41 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIAD 41 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHH
No 166
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=64.00 E-value=9 Score=36.06 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=31.2
Q ss_pred cCcccccCCCCHHHHHHHHHHcC-CeEEEEeCCCC
Q 039859 183 SNELEGEVFDDVPEALEKWHSLG-TKCNGVSSLTS 216 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G-~~l~i~Ssgs~ 216 (271)
++.-.-.+||...+.++.+|+.| ++++++|||+.
T Consensus 86 s~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 86 SLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred eCCCCcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 66666789999999999999999 79999999998
No 167
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=62.23 E-value=8.7 Score=36.25 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=35.6
Q ss_pred chhhHHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 165 KITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 165 K~~~LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-++-+=.--|-+|.. ...-|+++++|++|++.|.++.++||.|.
T Consensus 22 ~DtfifDcDGVlW~g--------~~~ipGs~e~l~~L~~~gK~i~fvTNNSt 65 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLG--------EKPIPGSPEALNLLKSLGKQIIFVTNNST 65 (306)
T ss_pred cCEEEEcCCcceeec--------CCCCCChHHHHHHHHHcCCcEEEEeCCCc
Confidence 344455555778872 45789999999999999999999999987
No 168
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=62.14 E-value=6.3 Score=39.13 Aligned_cols=43 Identities=23% Similarity=0.105 Sum_probs=27.5
Q ss_pred HHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 174 GHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 174 G~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
|.++++-=++-+.-..-=|++++.|++|+++|.++.++||..-
T Consensus 168 G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~ 210 (448)
T PF05761_consen 168 GSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPF 210 (448)
T ss_dssp SCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-H
T ss_pred hHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCC
Confidence 3344443334444445568899999999999999999999765
No 169
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=61.13 E-value=9.1 Score=31.96 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=27.3
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
....|||++.-|..|+++|+.+.+.|++-.
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~a 71 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMA 71 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCC
Confidence 356899999999999999999999999865
No 170
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=59.25 E-value=33 Score=30.49 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=50.2
Q ss_pred HHHHhhhcCcccccCCCCHHHHHHHHH-HcCCeEEEEeCCCCC-----------ccc------------cccccc-----
Q 039859 176 IWRTGFESNELEGEVFDDVPEALEKWH-SLGTKCNGVSSLTST-----------FIS------------LAASYF----- 226 (271)
Q Consensus 176 iw~~~y~~g~~~~~~ypdv~~~L~~l~-~~G~~l~i~Ssgs~~-----------yFD------------~~~sy~----- 226 (271)
.|.+-..-++. -.+--++..-|-.+| .+|=++|.+|.-+++ -|. .+.+|+
T Consensus 101 FW~~vn~g~D~-~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~ 179 (237)
T COG3700 101 FWEKVNNGWDE-FSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQ 179 (237)
T ss_pred HHHHHhcCCcc-ccchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccH
Confidence 56654433332 233344455555554 569999999988772 222 122222
Q ss_pred -cC--CCC----CCHHHH--HHHhCCeEEEEeCCCCC---CCCCCC
Q 039859 227 -LS--KEI----DVYFGL--IYRFGLDAIISVQPGNG---PLPESR 260 (271)
Q Consensus 227 -l~--~p~----D~~~d~--A~~AG~~t~~v~R~gn~---~~~~~~ 260 (271)
|. .-. |+-.|+ ||+||.+.+-+.|..|. |+|..+
T Consensus 180 ~i~~~~~~IhYGDSD~Di~AAkeaG~RgIRilRAaNSTy~PlP~aG 225 (237)
T COG3700 180 WIQDKNIRIHYGDSDNDITAAKEAGARGIRILRAANSTYKPLPQAG 225 (237)
T ss_pred HHHhcCceEEecCCchhhhHHHhcCccceeEEecCCccCCcCcccC
Confidence 11 111 888888 99999999999995554 666544
No 171
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=57.16 E-value=9.8 Score=34.20 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++|+..+.++.+++.|+++.+-|||+.
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 568999999999999999999999987
No 172
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=54.03 E-value=14 Score=30.98 Aligned_cols=28 Identities=11% Similarity=-0.031 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+.|++.+++++++++|+++.++|+-+.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~ 54 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPI 54 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcH
Confidence 4679999999999999998887777654
No 173
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=53.67 E-value=12 Score=40.24 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=27.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-+++||+++++++++++|+++.++|+.+.
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~ 555 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITGDSQ 555 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECCCCH
Confidence 38899999999999999999999999877
No 174
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=53.38 E-value=13 Score=33.70 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=25.3
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.++|.+.++|++|+++|+++++.|+.+.
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~~ 48 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKTA 48 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4778899999999999999999999876
No 175
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=51.90 E-value=14 Score=38.83 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=28.1
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+.-+++||+.++|++|+++|+++.++|+.+.
T Consensus 565 l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~ 595 (741)
T PRK11033 565 LQDTLRADARQAISELKALGIKGVMLTGDNP 595 (741)
T ss_pred EecCCchhHHHHHHHHHHCCCEEEEEcCCCH
Confidence 3458999999999999999999999999876
No 176
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=49.30 E-value=20 Score=30.38 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=25.4
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-++|++.+.++.+++.|+++.|.|||+.
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4678899999999999999999999976
No 177
>PRK10444 UMP phosphatase; Provisional
Probab=47.93 E-value=13 Score=33.61 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCH-HHH--HHHhCCeEEEEeCCCCC--CCC--CCCCceeeCCCCCC
Q 039859 232 DVY-FGL--IYRFGLDAIISVQPGNG--PLP--ESRGFKTINSFAGI 271 (271)
Q Consensus 232 D~~-~d~--A~~AG~~t~~v~R~gn~--~~~--~~~~~~~i~sf~el 271 (271)
|+. .|+ |+++|+++++|.+.-.. .+. ...++.+++|+.+|
T Consensus 199 D~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 199 DNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred CCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 886 788 99999999999762222 121 23467888887664
No 178
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=47.81 E-value=16 Score=30.07 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=23.9
Q ss_pred CcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 184 NELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 184 g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+.....+-|++.++|+.+.+ .+.++|+|+++.
T Consensus 31 ~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~ 62 (159)
T PF03031_consen 31 GGYYVKLRPGLDEFLEELSK-HYEVVIWTSASE 62 (159)
T ss_dssp EEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-H
T ss_pred cceeEeeCchHHHHHHHHHH-hceEEEEEeehh
Confidence 44456678999999999954 499999999987
No 179
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=47.68 E-value=50 Score=32.07 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeCCCC---Cccc-cccccc-cC-CCC-CCHHHH---HHHhCCeEEEE
Q 039859 193 DVPEALEKWHSLGTKCNGVSSLTS---TFIS-LAASYF-LS-KEI-DVYFGL---IYRFGLDAIIS 248 (271)
Q Consensus 193 dv~~~L~~l~~~G~~l~i~Ssgs~---~yFD-~~~sy~-l~-~p~-D~~~d~---A~~AG~~t~~v 248 (271)
|..+-.+..+++|.|=.|+|++.. ..|| ....|. .. .|. |...|+ +|++||+..+-
T Consensus 82 D~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y 147 (384)
T smart00812 82 DPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLY 147 (384)
T ss_pred CHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEE
Confidence 778888999999999999999977 3455 334555 33 455 999998 99999998874
No 180
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=47.17 E-value=18 Score=32.73 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=31.4
Q ss_pred HHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 176 IWRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 176 iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-|.+--..| +.+.-|++.++++.++++|++++++|+-+.
T Consensus 109 ~~~~wv~~~--~apaip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 109 AFWLWLGKG--AAPALPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred HHHHHHHcC--CCCCCHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 455533344 468999999999999999999999999874
No 181
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=45.40 E-value=19 Score=32.65 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=27.6
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+-..-|||..+.+++||++|+++.+..+-.+
T Consensus 59 ~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 59 DWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred ecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 44456899999999999999999999888665
No 182
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=45.20 E-value=22 Score=31.57 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++|+..+.|+.++++|+++.+-|||+.
T Consensus 84 ~~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 84 LQPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred CcccHHHHHHHHHhCCceEEecCCCCc
Confidence 456999999999999999999999998
No 183
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=45.18 E-value=17 Score=33.96 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCH-HHH--HHHhCCeEEEEeCCCCC----CCCCCCCceeeCCCCC
Q 039859 232 DVY-FGL--IYRFGLDAIISVQPGNG----PLPESRGFKTINSFAG 270 (271)
Q Consensus 232 D~~-~d~--A~~AG~~t~~v~R~gn~----~~~~~~~~~~i~sf~e 270 (271)
|+. .|+ |+++||++++|.. |.. ..+...+..++.|+.|
T Consensus 271 D~~~tDI~ga~~~G~~silV~t-G~~~~~~~~~~~~p~~vv~~l~e 315 (321)
T TIGR01456 271 DNPASDIIGAQNYGWFSCLVKT-GVYNGGDDLKECKPTLIVNDVFD 315 (321)
T ss_pred CChhhhhhhHHhCCceEEEecc-cccCCCCCCCCCCCCEEECCHHH
Confidence 777 677 9999999999954 411 1112235778888765
No 184
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=44.28 E-value=22 Score=30.70 Aligned_cols=29 Identities=21% Similarity=0.074 Sum_probs=25.1
Q ss_pred cccCCCCHHHHHHHHHHcCC--eEEEEeCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGT--KCNGVSSLT 215 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~--~l~i~Ssgs 215 (271)
...++|++.+.++++++.+. ++.|+||..
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa 87 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSA 87 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 36689999999999999877 599999974
No 185
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=44.19 E-value=23 Score=33.22 Aligned_cols=29 Identities=3% Similarity=-0.118 Sum_probs=26.1
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
--++||+.+.++.++++|..+++.|||..
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 33679999999999999999999999976
No 186
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=43.87 E-value=16 Score=30.67 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=24.2
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
-.++++.+.++.+++.|+++.++||+.
T Consensus 72 l~~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 72 WNREALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 466889999999999999999999875
No 187
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=42.73 E-value=22 Score=29.16 Aligned_cols=29 Identities=24% Similarity=0.100 Sum_probs=24.2
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+.+++.++|++|+++|+.+.++|.-+.
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~ 51 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNM 51 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 45778999999999999999998887653
No 188
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=42.70 E-value=29 Score=30.69 Aligned_cols=28 Identities=36% Similarity=0.153 Sum_probs=24.6
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
...|.+.++|++|+++|+++.+.|+.+.
T Consensus 15 ~~~~~~~~ai~~l~~~G~~~vi~TgR~~ 42 (225)
T TIGR02461 15 YEPGPAREALEELKDLGFPIVFVSSKTR 42 (225)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 3567899999999999999999998876
No 189
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=41.45 E-value=25 Score=37.87 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=26.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-+++||+++++++++++|+++.++|+.+.
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~ 564 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNK 564 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCH
Confidence 36899999999999999999999998664
No 190
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=41.31 E-value=26 Score=33.10 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=24.7
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..++.+.++|++|+++|+.+.+.|+++.
T Consensus 18 ~~~~~a~~aL~~Lk~~GI~vVlaTGRt~ 45 (302)
T PRK12702 18 NSYGAARQALAALERRSIPLVLYSLRTR 45 (302)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4777889999999999999999999877
No 191
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=40.21 E-value=13 Score=29.86 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHhhhcCcccccCCCCHHHHHHHHHHcCCeEE
Q 039859 166 ITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKCN 209 (271)
Q Consensus 166 ~~~LK~LQG~iw~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~ 209 (271)
-++.|++|-.+|..| -.|-...++|.+|.+.++.-...|..+-
T Consensus 30 ~~aykeIqkYlw~~g-~t~~~~~~Il~~iLelfE~aaadgk~v~ 72 (111)
T COG4817 30 YTAYKEIQKYLWKSG-PTGWNEMKILGNILELFEEAAADGKEVT 72 (111)
T ss_pred HHHHHHHHHHHHHcC-cchhHHHHHHHHHHHHHHHHHhccccHH
Confidence 357899999999999 4455545599999999999998887654
No 192
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=40.02 E-value=21 Score=30.06 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.3
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+.+|+.|.+.+++|++. +.+||.|.-.-
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~ 56 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRK 56 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcc
Confidence 57999999999999999 99999886433
No 193
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=38.40 E-value=32 Score=29.68 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=19.6
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+.|...++|++|+++|+++.+.|.-+.
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~ 45 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTV 45 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 3566777777777777777777766654
No 194
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=37.93 E-value=22 Score=25.16 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHcCCeEEEEe
Q 039859 192 DDVPEALEKWHSLGTKCNGVS 212 (271)
Q Consensus 192 pdv~~~L~~l~~~G~~l~i~S 212 (271)
|+-.++|++|.++|.+|-|.|
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 355789999999999999976
No 195
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=37.56 E-value=37 Score=29.27 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 191 FDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 191 ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.|...++|++|+++|++++++|+.+.
T Consensus 18 ~~~~~~~l~~l~~~gi~~~i~TgR~~ 43 (221)
T TIGR02463 18 WQPAAPWLTRLQEAGIPVILCTSKTA 43 (221)
T ss_pred cHHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 34478999999999999999999987
No 196
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=37.46 E-value=32 Score=29.22 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=24.6
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+-|.+.++|++|+++|.+++++|+.+.
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~ 44 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSL 44 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCH
Confidence 4668889999999999999999998877
No 197
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=36.85 E-value=29 Score=32.50 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=26.0
Q ss_pred ccCCCCHHHHHHHHHHc----CCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSL----GTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~----G~~l~i~Ssgs~ 216 (271)
..++|++.++|+.|+++ |+++.++||.+-
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g 47 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGG 47 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCC
Confidence 45699999999999998 999999999863
No 198
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=36.80 E-value=29 Score=30.84 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=24.5
Q ss_pred CCCC-HHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDD-VPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypd-v~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++++ +.++++.+|++|+.+++-|||..
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 6778 68999999999999999999966
No 199
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=36.77 E-value=38 Score=30.34 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=31.0
Q ss_pred HHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 177 WRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 177 w~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
|.+.-..|.. +..|++.++++.++++|++++.+|+-+.
T Consensus 105 w~~wv~~~~~--~aip~a~~l~~~~~~~G~~V~~iT~R~~ 142 (229)
T PF03767_consen 105 WDEWVASGKA--PAIPGALELYNYARSRGVKVFFITGRPE 142 (229)
T ss_dssp HHHHHHCTGG--EEETTHHHHHHHHHHTTEEEEEEEEEET
T ss_pred HHHHHhcccC--cccHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 5554445554 8899999999999999999999999654
No 200
>PLN03017 trehalose-phosphatase
Probab=36.68 E-value=15 Score=35.65 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=16.7
Q ss_pred cccccccceecccCcch-HH
Q 039859 76 VWRAGEVISRQLNGLTS-AS 94 (271)
Q Consensus 76 ~WG~~~vil~DiEGTt~-is 94 (271)
..|+.+++++|+|||++ |.
T Consensus 107 ~~~k~~llflD~DGTL~Piv 126 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIV 126 (366)
T ss_pred hcCCCeEEEEecCCcCcCCc
Confidence 67888999999999999 54
No 201
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=36.49 E-value=37 Score=31.82 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=25.3
Q ss_pred CcccccCCCCHHHHHHHHHHcCCeEEEEeCC
Q 039859 184 NELEGEVFDDVPEALEKWHSLGTKCNGVSSL 214 (271)
Q Consensus 184 g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssg 214 (271)
=.+-...|||..+.+++||++|+++.+..+-
T Consensus 56 f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P 86 (317)
T cd06600 56 FTWDPYRFPEPKKLIDELHKRNVKLVTIVDP 86 (317)
T ss_pred eeechhcCCCHHHHHHHHHHCCCEEEEEeec
Confidence 3455668999999999999999998876543
No 202
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=35.26 E-value=41 Score=29.72 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=24.0
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+-|...++|++|+++|+++.+.|+.+.
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~ 43 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPY 43 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 4667889999999999999999988876
No 203
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.54 E-value=40 Score=31.32 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=25.6
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+-..-|||..+.++++|++|+++.+..+-.+
T Consensus 64 ~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i 94 (303)
T cd06592 64 FDPTKFPDPKGMIDQLHDLGFRVTLWVHPFI 94 (303)
T ss_pred cChhhCCCHHHHHHHHHHCCCeEEEEECCee
Confidence 3345799999999999999999998776533
No 204
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=34.25 E-value=46 Score=31.28 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++||..+.++.+++.|+.+.+.|||..
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~l 92 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGVG 92 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCcc
Confidence 689999999999999999999999975
No 205
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=33.82 E-value=32 Score=34.43 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=29.2
Q ss_pred cccccc-cceecccCcchHHHHHHHHHHHHhhccCCcchHH
Q 039859 76 VWRAGE-VISRQLNGLTSASADSNKVEKHLSATHETAGTKG 115 (271)
Q Consensus 76 ~WG~~~-vil~DiEGTt~is~~~~~l~~~l~~~~~~~e~~~ 115 (271)
+|--+. ++++|||||+|-|-|..++.+++-+.|..--+..
T Consensus 370 vwr~n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAk 410 (580)
T COG5083 370 VWRNNKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAK 410 (580)
T ss_pred EEeCCCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhh
Confidence 777666 7899999999955566666777777777655543
No 206
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=33.13 E-value=38 Score=32.08 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=28.2
Q ss_pred hhhcCcccccCCCCH--HHHHHHHHHcCCeEEEEeCC
Q 039859 180 GFESNELEGEVFDDV--PEALEKWHSLGTKCNGVSSL 214 (271)
Q Consensus 180 ~y~~g~~~~~~ypdv--~~~L~~l~~~G~~l~i~Ssg 214 (271)
.|..-.+....|||. .+.+++||++|+|+.+..+-
T Consensus 52 ~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P 88 (339)
T cd06602 52 RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDP 88 (339)
T ss_pred CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeC
Confidence 344445666789999 99999999999999887754
No 207
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=32.65 E-value=44 Score=31.74 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=25.4
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-++||+.+.++.+++.|+.+.+.|||..
T Consensus 74 ll~~~~~~il~~~~~~g~~~~i~TNG~l 101 (378)
T PRK05301 74 LLRKDLEELVAHARELGLYTNLITSGVG 101 (378)
T ss_pred CCchhHHHHHHHHHHcCCcEEEECCCcc
Confidence 4589999999999999999999999975
No 208
>PLN02580 trehalose-phosphatase
Probab=32.22 E-value=19 Score=35.15 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=16.2
Q ss_pred cccccccceecccCcch-HH
Q 039859 76 VWRAGEVISRQLNGLTS-AS 94 (271)
Q Consensus 76 ~WG~~~vil~DiEGTt~-is 94 (271)
..++..+++||+|||++ |.
T Consensus 115 ~~~k~~~LfLDyDGTLaPIv 134 (384)
T PLN02580 115 AKGKKIALFLDYDGTLSPIV 134 (384)
T ss_pred hhcCCeEEEEecCCccCCCC
Confidence 56778899999999999 65
No 209
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=31.83 E-value=36 Score=33.55 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=54.0
Q ss_pred hhcCcccccCCCC-HHHHHHHHHHcCCeEEEEeCCCC----------------Cccc----cccccc----cC---CCC-
Q 039859 181 FESNELEGEVFDD-VPEALEKWHSLGTKCNGVSSLTS----------------TFIS----LAASYF----LS---KEI- 231 (271)
Q Consensus 181 y~~g~~~~~~ypd-v~~~L~~l~~~G~~l~i~Ssgs~----------------~yFD----~~~sy~----l~---~p~- 231 (271)
-+.|---..++-| ..+.+++++..|.-++|+|=|.. .+|| -...|- |+ .|-
T Consensus 150 a~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~ 229 (423)
T TIGR00190 150 AKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGC 229 (423)
T ss_pred HHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCc
Confidence 3466666678888 57899999999999999999855 6777 344454 43 342
Q ss_pred -----C--------CHHHH---HHHhCCeEEEEeCCCCCCCC
Q 039859 232 -----D--------VYFGL---IYRFGLDAIISVQPGNGPLP 257 (271)
Q Consensus 232 -----D--------~~~d~---A~~AG~~t~~v~R~gn~~~~ 257 (271)
| +..|+ |+++|+|+. |.-||..|+.
T Consensus 230 i~DA~D~aQi~El~~lgeL~~rA~e~gVQvM-VEGPGHvPl~ 270 (423)
T TIGR00190 230 IADATDRAQISELITLGELVERAREADVQCM-VEGPGHVPLD 270 (423)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHcCCeEE-EECCCCCcHH
Confidence 3 33344 999999976 7778877753
No 210
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=31.46 E-value=1e+02 Score=32.39 Aligned_cols=47 Identities=11% Similarity=0.234 Sum_probs=26.6
Q ss_pred EeeCc--cccccc-cceecccCcchHHHHHHHHHHHHhhccCCcchHHHH
Q 039859 71 LVPNH--VWRAGE-VISRQLNGLTSASADSNKVEKHLSATHETAGTKGDI 117 (271)
Q Consensus 71 Lir~H--~WG~~~-vil~DiEGTt~is~~~~~l~~~l~~~~~~~e~~~~i 117 (271)
-+.+| .|-=+- +++-|||||+|=|-+..++-.++-..|...-|....
T Consensus 518 ~c~~~IYlWkWn~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLy 567 (738)
T KOG2116|consen 518 QCEGNIYLWKWNDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLY 567 (738)
T ss_pred EEeeEEEEEecCCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHH
Confidence 44556 554333 788999999993333333444444555554444433
No 211
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=31.38 E-value=50 Score=28.30 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+.|.+.++|++|+++|+++.+.|.-+.
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~ 42 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSV 42 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence 455566667777777776666665443
No 212
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=31.29 E-value=51 Score=31.08 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=27.0
Q ss_pred hhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeC
Q 039859 180 GFESNELEGEVFDDVPEALEKWHSLGTKCNGVSS 213 (271)
Q Consensus 180 ~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ss 213 (271)
+|..-.+-..-|||..+.+++||++|+++.++.+
T Consensus 52 ~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 52 GYRVFTWDKERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 3444456667999999999999999999986654
No 213
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=31.01 E-value=46 Score=28.27 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+-|...++|++|+++|+++++.|.-+.
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~ 42 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSY 42 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTH
T ss_pred eCHHHHHHHHhhcccceEEEEEccCcc
Confidence 667889999999999998888888766
No 214
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.88 E-value=61 Score=21.82 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=19.9
Q ss_pred HHhhhcCcccccCCCCHHHHHHHHHHcCCeE
Q 039859 178 RTGFESNELEGEVFDDVPEALEKWHSLGTKC 208 (271)
Q Consensus 178 ~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l 208 (271)
...++.|.+. ++.++|++|+++|+++
T Consensus 10 ~~Ak~~GlI~-----~~~~~l~~l~~~g~~i 35 (48)
T PF11848_consen 10 LLAKRRGLIS-----EVKPLLDRLQQAGFRI 35 (48)
T ss_pred HHHHHcCChh-----hHHHHHHHHHHcCccc
Confidence 3445566654 8999999999999875
No 215
>PLN02151 trehalose-phosphatase
Probab=30.59 E-value=21 Score=34.43 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=16.8
Q ss_pred cccccccceecccCcch-HH
Q 039859 76 VWRAGEVISRQLNGLTS-AS 94 (271)
Q Consensus 76 ~WG~~~vil~DiEGTt~-is 94 (271)
..|+..+++||+|||++ |.
T Consensus 94 ~~~~~~ll~lDyDGTL~PIv 113 (354)
T PLN02151 94 SEGKQIVMFLDYDGTLSPIV 113 (354)
T ss_pred hcCCceEEEEecCccCCCCC
Confidence 67888899999999999 65
No 216
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=30.06 E-value=50 Score=28.47 Aligned_cols=27 Identities=19% Similarity=0.030 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+-|...++|++|+++|+++.+.|.-+.
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~ 47 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVL 47 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence 556777888888888887777776654
No 217
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=29.84 E-value=51 Score=30.45 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=23.9
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeC
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSS 213 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ss 213 (271)
+-..-|||..+.+++++++|+++.+..+
T Consensus 60 ~d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 60 FDPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ECcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 3445899999999999999999988765
No 218
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=29.18 E-value=58 Score=30.72 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=26.4
Q ss_pred hhcCcccccCCCCHHHHHHHHHHcCCeEEEEeC
Q 039859 181 FESNELEGEVFDDVPEALEKWHSLGTKCNGVSS 213 (271)
Q Consensus 181 y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ss 213 (271)
|..=.+-...|||....+++||++|+++.+..+
T Consensus 53 ~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 53 KRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred CCceEeCcccCCCHHHHHHHHHHCCCEEEEEec
Confidence 333345567899999999999999999987665
No 219
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=29.00 E-value=1.7e+02 Score=31.57 Aligned_cols=90 Identities=13% Similarity=0.225 Sum_probs=56.6
Q ss_pred ceecc-cCcch-HH--H--HHHHHHHHHhhccCCcchHHHHHHHHHhhHHHhh-------cccCCCCCCCC----CCCch
Q 039859 83 ISRQL-NGLTS-AS--A--DSNKVEKHLSATHETAGTKGDIKILQSQVEDDLK-------QGVAGAVPIPP----SDAGK 145 (271)
Q Consensus 83 il~Di-EGTt~-is--~--~~~~l~~~l~~~~~~~e~~~~i~~l~~~~~~~~~-------~~~~~~~~~~~----~~~~~ 145 (271)
+=+.| ||.++ .. + ++++|.+=|+....++||++.+++||+.+.+=++ .+- ..-..++ ...-.
T Consensus 458 lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~-~~~~~p~~~~~~~~~~ 536 (820)
T PF13779_consen 458 LALRIEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNP-QQQDQPPDQGNSQMMS 536 (820)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCc-ccccCcccchhhhccC
Confidence 33444 67766 33 3 9999999999999999999999999975422111 110 0001111 01123
Q ss_pred HHHHHHHHHHHHHhhhhccchhhHHHHH
Q 039859 146 EEVIAALVANVDAMIKADRKITALKQLQ 173 (271)
Q Consensus 146 ~~~~~~~~~~v~~~i~~DrK~~~LK~LQ 173 (271)
...++.+.+.+..++.+-++..+...|+
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~ 564 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLE 564 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567777888888888888887755444
No 220
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=29.00 E-value=43 Score=33.08 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=53.2
Q ss_pred hcCcccccCCCC-HHHHHHHHHHcCCeEEEEeCCCC----------------Cccc----cccccc----cC---CCC--
Q 039859 182 ESNELEGEVFDD-VPEALEKWHSLGTKCNGVSSLTS----------------TFIS----LAASYF----LS---KEI-- 231 (271)
Q Consensus 182 ~~g~~~~~~ypd-v~~~L~~l~~~G~~l~i~Ssgs~----------------~yFD----~~~sy~----l~---~p~-- 231 (271)
+.|---..++-| ..+.|+++++.|..++|+|=|.. .+|| -...|- |+ .|-
T Consensus 154 ~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i 233 (431)
T PRK13352 154 KDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCI 233 (431)
T ss_pred HhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCcc
Confidence 366666678888 57899999999999999998855 6777 344454 33 332
Q ss_pred ----C--------CHHHH---HHHhCCeEEEEeCCCCCCCC
Q 039859 232 ----D--------VYFGL---IYRFGLDAIISVQPGNGPLP 257 (271)
Q Consensus 232 ----D--------~~~d~---A~~AG~~t~~v~R~gn~~~~ 257 (271)
| +..|+ |+++|+|+. |.-||..|+.
T Consensus 234 ~Da~D~aQi~El~~lgeL~~RA~e~gVQvM-VEGPGHvPl~ 273 (431)
T PRK13352 234 ADATDRAQIQELITLGELVKRAREAGVQVM-VEGPGHVPLD 273 (431)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHcCCeEE-EECCCCCCHH
Confidence 2 33444 999999987 5558887753
No 221
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=28.92 E-value=45 Score=29.58 Aligned_cols=27 Identities=4% Similarity=-0.113 Sum_probs=23.7
Q ss_pred CCCCH-HHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDV-PEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv-~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+++|. .+.++.+++.|+++.+.|||..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 67884 6999999999999999999974
No 222
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.39 E-value=66 Score=30.53 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.4
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSS 213 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ss 213 (271)
.-|||....+++||++|+++.++.+
T Consensus 82 ~~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 82 GRWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 4699999999999999999976543
No 223
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=28.12 E-value=69 Score=30.42 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=27.4
Q ss_pred HhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeC
Q 039859 179 TGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSS 213 (271)
Q Consensus 179 ~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ss 213 (271)
.+|..-.+-..-|||....+++|++.|+++.+...
T Consensus 51 ~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 51 DNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred cCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEec
Confidence 34554455567899999999999999999877554
No 224
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=27.73 E-value=26 Score=31.20 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=13.0
Q ss_pred ccccceecccCcch-HH
Q 039859 79 AGEVISRQLNGLTS-AS 94 (271)
Q Consensus 79 ~~~vil~DiEGTt~-is 94 (271)
+...++||+|||++ +.
T Consensus 2 ~~~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIV 18 (244)
T ss_pred CcEEEEEecCccccCCc
Confidence 45678999999999 64
No 225
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=27.42 E-value=47 Score=29.45 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=17.0
Q ss_pred CCH-HHH--HHHhCCeEEEEeC
Q 039859 232 DVY-FGL--IYRFGLDAIISVQ 250 (271)
Q Consensus 232 D~~-~d~--A~~AG~~t~~v~R 250 (271)
|+. .|+ |+++|+++++|.+
T Consensus 214 D~~~~Di~~A~~~G~~~i~v~~ 235 (236)
T TIGR01460 214 DNLRTDILGAKNAGFDTLLVLT 235 (236)
T ss_pred CCcHHHHHHHHHCCCcEEEEec
Confidence 898 688 9999999999965
No 226
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=26.86 E-value=58 Score=32.20 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=30.5
Q ss_pred cccccceecc--------------------cCcch-HHH---HHHHHHHHHhhccCCcchHHHHHHHH
Q 039859 78 RAGEVISRQL--------------------NGLTS-ASA---DSNKVEKHLSATHETAGTKGDIKILQ 121 (271)
Q Consensus 78 G~~~vil~Di--------------------EGTt~-is~---~~~~l~~~l~~~~~~~e~~~~i~~l~ 121 (271)
|.+...|+|| ||||+ +-+ +...++.|+++..+..-+...+...+
T Consensus 62 GATIlKlldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~ 129 (543)
T KOG0361|consen 62 GATILKLLDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKAR 129 (543)
T ss_pred cHHHHHHHhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHH
Confidence 6677777777 99999 443 88999999988776544434333333
No 227
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=26.84 E-value=52 Score=32.30 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=28.3
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEE-EeCCCC
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNG-VSSLTS 216 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i-~Ssgs~ 216 (271)
+|.-..-.||++.+.|+.+++.|+.+.| +|||+.
T Consensus 80 sGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~ 114 (404)
T TIGR03278 80 SGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKG 114 (404)
T ss_pred ECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcc
Confidence 4444455899999999999999999999 599873
No 228
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=26.75 E-value=63 Score=28.54 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=20.2
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+-|...++|++|+++|+++.+.|.-+.
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~ 47 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHH 47 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 4667778888888888887777765543
No 229
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=26.16 E-value=49 Score=32.07 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHhhhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 177 WRTGFESNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 177 w~~~y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
|..+|..-.+....|||..+.++.||++|+++.+..+-.+
T Consensus 68 ~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v 107 (441)
T PF01055_consen 68 YQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFV 107 (441)
T ss_dssp GSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEE
T ss_pred ccccccccccccccccchHHHHHhHhhCCcEEEEEeeccc
Confidence 5455666677778999999999999999999987766433
No 230
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=26.15 E-value=42 Score=28.44 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=18.5
Q ss_pred CccEEEeeCc-cccccc--cceecccC
Q 039859 66 KTTAVLVPNH-VWRAGE--VISRQLNG 89 (271)
Q Consensus 66 ~~~avLir~H-~WG~~~--vil~DiEG 89 (271)
...-+++..| |||++- ++|||-|=
T Consensus 24 g~A~IILeah~vW~DgsGyQ~LlDaDH 50 (161)
T PF10365_consen 24 GMARIILEAHNVWGDGSGYQMLLDADH 50 (161)
T ss_pred CceEEEEeccccccCCcceEEEEcCCc
Confidence 3456888999 999986 78888753
No 231
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=26.05 E-value=37 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 192 DDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 192 pdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+..+.+.+|+++|+++.++|||.+
T Consensus 31 ~~l~~~ia~L~~~G~eVilVSSGAi 55 (369)
T COG0263 31 EELVRQVAALHKAGHEVVLVSSGAI 55 (369)
T ss_pred HHHHHHHHHHHhCCCEEEEEccchh
Confidence 3457899999999999999999987
No 232
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=25.89 E-value=72 Score=29.91 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=26.3
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+-..-|||..+.+++||++|+++.+.-.-.+
T Consensus 64 ~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v 95 (317)
T cd06594 64 EWDPERYPGLDELIEELKARGIRVLTYINPYL 95 (317)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEEecCce
Confidence 45567899999999999999999887665443
No 233
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.80 E-value=72 Score=24.81 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 191 FDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 191 ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-+++.++++.++++|.++..+|+...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36789999999999999999999753
No 234
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=25.27 E-value=2.1e+02 Score=30.99 Aligned_cols=89 Identities=16% Similarity=0.252 Sum_probs=54.7
Q ss_pred cCcch-HH--H--HHHHHHHHHhhccCCcchHHHHHHHHHhhHHHh-------hcccC-CCCCC-CCCCCchHHHHHHHH
Q 039859 88 NGLTS-AS--A--DSNKVEKHLSATHETAGTKGDIKILQSQVEDDL-------KQGVA-GAVPI-PPSDAGKEEVIAALV 153 (271)
Q Consensus 88 EGTt~-is--~--~~~~l~~~l~~~~~~~e~~~~i~~l~~~~~~~~-------~~~~~-~~~~~-~~~~~~~~~~~~~~~ 153 (271)
||.++ -- . ++++|.+=|+....++||++.+++||+.+.+=+ ..+-. +..+- +....-....++.+.
T Consensus 495 dG~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mm 574 (851)
T TIGR02302 495 DGDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMM 574 (851)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHH
Confidence 56666 32 3 999999999999999999999999997542211 11100 00000 001111235567777
Q ss_pred HHHHHhhhhccchhh---HHHHHHHH
Q 039859 154 ANVDAMIKADRKITA---LKQLQGHI 176 (271)
Q Consensus 154 ~~v~~~i~~DrK~~~---LK~LQG~i 176 (271)
+-+..++.+-++..+ |-+||-++
T Consensus 575 d~ieela~~G~~~~A~qlL~qlq~mm 600 (851)
T TIGR02302 575 DQIENLARSGDRDQAKQLLSQLQQMM 600 (851)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 778888877777766 66666444
No 235
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.09 E-value=79 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=27.0
Q ss_pred hhcCcccccCCCCHHHHHHHHHHcCCeEEEEeCC
Q 039859 181 FESNELEGEVFDDVPEALEKWHSLGTKCNGVSSL 214 (271)
Q Consensus 181 y~~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssg 214 (271)
|..-.+-..-|||....+++||++|+++.+...-
T Consensus 63 ~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 63 WTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred cceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 3334455568999999999999999999887654
No 236
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=24.69 E-value=77 Score=29.61 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=27.5
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+.+.-|++.+.++.+++.|++++++|+-+.
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 567899999999999999999999999875
No 237
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=24.67 E-value=85 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=24.2
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSS 213 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ss 213 (271)
.+-..-|||..+.+++|+++|+++.+..+
T Consensus 59 ~~d~~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 59 KFDPERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 34556899999999999999999887553
No 238
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.48 E-value=53 Score=30.14 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 193 DVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 193 dv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-+.|.|.+|++.|+++...|||++
T Consensus 27 pA~pv~~el~d~G~~Vi~~SSKT~ 50 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSSKTR 50 (274)
T ss_pred ccchHHHHHHHcCCeEEEeccchH
Confidence 568999999999999999999988
No 239
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.25 E-value=87 Score=25.17 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeCC
Q 039859 191 FDDVPEALEKWHSLGTKCNGVSSL 214 (271)
Q Consensus 191 ypdv~~~L~~l~~~G~~l~i~Ssg 214 (271)
--|..++++++++.|+++.+++..
T Consensus 109 D~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 109 DSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CccHHHHHHHHHHcCCEEEEEccC
Confidence 348899999999999999999987
No 240
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=24.12 E-value=78 Score=27.18 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCC--Cccc
Q 039859 194 VPEALEKWHSLGTKCNGVSSLTS--TFIS 220 (271)
Q Consensus 194 v~~~L~~l~~~G~~l~i~Ssgs~--~yFD 220 (271)
+.+++.++++.|++.+||||.+- .+|.
T Consensus 112 ~~~f~~~~~~~G~~~~iYt~~~~w~~~~~ 140 (196)
T cd06416 112 LQELVSAAKALGLKVGIYSSQYDWSQIFG 140 (196)
T ss_pred HHHHHHHHHHhCCeEEEEcCcchhccccC
Confidence 45677888888999999999874 4554
No 241
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=24.00 E-value=56 Score=31.93 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 192 DDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 192 pdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
|....+|++|+++|.+|..+||.+-
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPy 267 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPY 267 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCch
Confidence 3457889999999999999999865
No 242
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=23.94 E-value=3.9e+02 Score=24.50 Aligned_cols=29 Identities=17% Similarity=-0.025 Sum_probs=21.4
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
...+=+++.++++.|+++++++.|+|-|-
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGl 116 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGL 116 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEE
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCc
Confidence 46678899999999999999999999873
No 243
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.93 E-value=95 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=25.6
Q ss_pred cccccCCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 185 ELEGEVFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 185 ~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
.+-...|||..+.+++||++|+++.+..+-.
T Consensus 66 ~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~ 96 (317)
T cd06599 66 NWNKDRFPDPAAFVAKFHERGIRLAPNIKPG 96 (317)
T ss_pred ecCcccCCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 3446799999999999999999998765543
No 244
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=23.67 E-value=67 Score=33.89 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=26.7
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.-++-||+++++++++++|+++.++|.-+.
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~ 469 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHL 469 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCH
Confidence 347889999999999999999999998665
No 245
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.17 E-value=80 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+.+...++|++|+++|+++.+.|..+.
T Consensus 25 i~~~~~~ai~~l~~~Gi~~viaTGR~~ 51 (271)
T PRK03669 25 DWQPAAPWLTRLREAQVPVILCSSKTA 51 (271)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCH
Confidence 345556677777777776666666554
No 246
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.98 E-value=90 Score=29.15 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.0
Q ss_pred cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 183 SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 183 ~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
.-.+-..-|||....+++||++|+++.+..+-.
T Consensus 61 ~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 61 NLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred eeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 334556789999999999999999999877643
No 247
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=22.78 E-value=45 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 193 DVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 193 dv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+.+.|+.|....+++.|+|.|++
T Consensus 54 ~i~~~l~n~~~~~v~v~VVTDG~r 77 (182)
T PF00390_consen 54 HIEEILRNWPERDVRVIVVTDGER 77 (182)
T ss_dssp CHHHHHTTSS-SS--EEEEE-SSS
T ss_pred HHHHHHHhhhccCceEEEEeCchh
Confidence 578999999999999999999998
No 248
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=22.56 E-value=77 Score=28.32 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+-|...++|++|+++|+++.+.|.-+.
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR~~ 46 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGRHV 46 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCH
Confidence 556667777777777777776666554
No 249
>PRK10658 putative alpha-glucosidase; Provisional
Probab=22.51 E-value=88 Score=32.71 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=30.9
Q ss_pred HHHHhhh--cCcccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 176 IWRTGFE--SNELEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 176 iw~~~y~--~g~~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
-|.++|. .-.+-..-|||-...+++||++|+++.+..+-.+
T Consensus 307 ~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i 349 (665)
T PRK10658 307 FWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYI 349 (665)
T ss_pred hhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCc
Confidence 3555544 3344457899999999999999999998877544
No 250
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=22.31 E-value=67 Score=27.56 Aligned_cols=25 Identities=16% Similarity=-0.037 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 192 DDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 192 pdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+..+++++++.|++.+||||.+-
T Consensus 113 ~~~~~f~~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 113 DIANAFCETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHHHHHHHHcCCCeEEEecHHH
Confidence 3457889999999999999999873
No 251
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=22.16 E-value=94 Score=28.41 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=25.5
Q ss_pred ccCCCCHHHHHHHHHHcCC-eEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGT-KCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~-~l~i~Ssgs~ 216 (271)
.-++|++.+.++.+++.|+ .+.+.|||..
T Consensus 67 Pll~~~l~~iv~~l~~~g~~~v~i~TNG~l 96 (302)
T TIGR02668 67 PLLRKDLIEIIRRIKDYGIKDVSMTTNGIL 96 (302)
T ss_pred cccccCHHHHHHHHHhCCCceEEEEcCchH
Confidence 3468999999999999998 8999999975
No 252
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=21.68 E-value=58 Score=31.48 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=24.8
Q ss_pred ccccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 186 LEGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 186 ~~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+....+..+.+.+.+|+++|+++.|+|||.+
T Consensus 24 l~~~~i~~la~~I~~l~~~G~~vvlVsSGav 54 (368)
T PRK13402 24 CSSHYLLGLVQQIVYLKDQGHQVVLVSSGAV 54 (368)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 3344455677889999999999999999974
No 253
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.65 E-value=94 Score=24.09 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 191 FDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 191 ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
-+++.++++..+++|.++..+|+..
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3578899999999999999999974
No 254
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=21.58 E-value=90 Score=28.94 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 193 DVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 193 dv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.+.+.|..|+++|.++.++|||.+
T Consensus 35 ~l~~~i~~l~~~g~~vilVssGAv 58 (284)
T cd04256 35 SIVEQVSELQSQGREVILVTSGAV 58 (284)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCcH
Confidence 356788899999999999999988
No 255
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=21.44 E-value=1e+02 Score=30.51 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=26.9
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.-++.||+.+++++|+++|+++.++|..+.
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~ 374 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNV 374 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCH
Confidence 458999999999999999999999998765
No 256
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=21.20 E-value=90 Score=33.82 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=25.5
Q ss_pred cCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 189 EVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 189 ~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++-||+++++++++++|+++.++|.-+.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~ 606 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNI 606 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCh
Confidence 7889999999999999999999987655
No 257
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=21.03 E-value=62 Score=31.83 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=26.4
Q ss_pred ccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 188 GEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 188 ~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
..+||.++.-|+.+.+.|+.++|.||..-
T Consensus 103 ~~l~~~vp~Klktl~~~g~~l~iftnq~~ 131 (422)
T KOG2134|consen 103 RILFPEVPSKLKTLYQDGIKLFIFTNQNG 131 (422)
T ss_pred eeeccccchhhhhhccCCeEEEEEecccc
Confidence 45899999999999999999999999754
No 258
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=20.79 E-value=97 Score=27.47 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
+-|...++|++|+++|+++.+.|.-+.
T Consensus 21 i~~~~~~ai~~l~~~G~~~~iaTGR~~ 47 (270)
T PRK10513 21 ISPAVKQAIAAARAKGVNVVLTTGRPY 47 (270)
T ss_pred cCHHHHHHHHHHHHCCCEEEEecCCCh
Confidence 455667777777777776666655544
No 259
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=20.47 E-value=95 Score=24.28 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHhhccCCcchHHHHHHHHHhhHHHhhcccCCCCCCCCCCCchHHHHHHHHHHHHHhhhhccchhhHH
Q 039859 101 EKHLSATHETAGTKGDIKILQSQVEDDLKQGVAGAVPIPPSDAGKEEVIAALVANVDAMIKADRKITALK 170 (271)
Q Consensus 101 ~~~l~~~~~~~e~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~DrK~~~LK 170 (271)
++||+.+|...+....++..++=+...++ .+.|..+++++|+..|++
T Consensus 35 EkFLKG~~~~~eC~~~w~~Yq~Cv~~aL~-----------------------ek~I~~lLe~ar~~~p~~ 81 (91)
T PLN03079 35 EKFVKGQWDKEDCVAEWHKYRACLSEHLE-----------------------DKHLSQILEVDGTSAPYK 81 (91)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHHHH-----------------------HcChHHHHHHHhhcCCcC
Confidence 77999999887887777666643322221 233445667777776665
No 260
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.42 E-value=1e+02 Score=24.09 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeCCC
Q 039859 191 FDDVPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 191 ypdv~~~L~~l~~~G~~l~i~Ssgs 215 (271)
-+++.++++..+++|.++..+|+.+
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3578899999999999999999765
No 261
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=20.39 E-value=75 Score=28.97 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=24.0
Q ss_pred CCCCH-HHHHHHHHHcCCeEEEEeCCCC
Q 039859 190 VFDDV-PEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 190 ~ypdv-~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
++|+. .+.++.+++.|+++.+.|||..
T Consensus 138 l~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 138 LQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred chHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 67885 6999999999999999999965
No 262
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=20.28 E-value=95 Score=34.11 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=26.4
Q ss_pred cccCCCCHHHHHHHHHHcCCeEEEEeCCCC
Q 039859 187 EGEVFDDVPEALEKWHSLGTKCNGVSSLTS 216 (271)
Q Consensus 187 ~~~~ypdv~~~L~~l~~~G~~l~i~Ssgs~ 216 (271)
.-++=||+++++++++++|+++.++|.-+.
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~ 683 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNP 683 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCH
Confidence 347899999999999999999999997554
No 263
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=20.18 E-value=82 Score=27.51 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=23.2
Q ss_pred cCCCC-HHHHHHHHHHcCCeEEEEeCCC
Q 039859 189 EVFDD-VPEALEKWHSLGTKCNGVSSLT 215 (271)
Q Consensus 189 ~~ypd-v~~~L~~l~~~G~~l~i~Ssgs 215 (271)
-++|+ +.+.++.+++.|+++.+.|||.
T Consensus 77 ll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 77 LLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 36788 4599999999999999999994
No 264
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=20.12 E-value=31 Score=26.71 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHcC--CeEEEEeCCCC
Q 039859 192 DDVPEALEKWHSLG--TKCNGVSSLTS 216 (271)
Q Consensus 192 pdv~~~L~~l~~~G--~~l~i~Ssgs~ 216 (271)
++..+.++.+++.| ..+.+.|||..
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~ 91 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTL 91 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STT
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCee
Confidence 56789999999999 99999999975
Done!