Query 039861
Match_columns 557
No_of_seqs 459 out of 3241
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.3E-55 1.1E-59 464.4 24.1 481 1-529 343-847 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-47 6.1E-52 427.4 27.6 490 1-551 376-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 2E-24 4.3E-29 243.3 14.6 207 244-456 148-367 (968)
4 PLN00113 leucine-rich repeat r 99.9 3.9E-24 8.5E-29 240.9 14.8 342 175-552 188-588 (968)
5 KOG0444 Cytoskeletal regulator 99.9 4.1E-26 8.9E-31 221.7 -3.4 320 173-550 53-377 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.4E-25 7.3E-30 215.4 -5.9 313 175-548 32-352 (1255)
7 PLN03210 Resistant to P. syrin 99.9 3.5E-21 7.6E-26 217.2 19.4 306 175-528 589-910 (1153)
8 KOG4194 Membrane glycoprotein 99.8 2E-22 4.2E-27 194.9 2.2 334 175-547 78-428 (873)
9 KOG4194 Membrane glycoprotein 99.8 5.7E-22 1.2E-26 191.7 3.9 334 175-548 102-452 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 3E-22 6.4E-27 185.4 -4.8 123 404-548 390-541 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 9.4E-21 2E-25 175.6 -6.4 246 225-547 64-309 (565)
12 KOG0618 Serine/threonine phosp 99.7 3.7E-18 8E-23 174.2 0.1 331 177-548 47-489 (1081)
13 PF00931 NB-ARC: NB-ARC domain 99.7 1.1E-17 2.5E-22 161.5 1.5 100 1-100 183-285 (287)
14 KOG0618 Serine/threonine phosp 99.7 1.6E-18 3.5E-23 176.8 -6.9 142 167-324 13-154 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 4.5E-15 9.7E-20 156.3 11.8 256 203-550 202-460 (788)
16 KOG0617 Ras suppressor protein 99.6 4.6E-17 9.9E-22 133.9 -4.4 156 172-345 30-187 (264)
17 KOG4237 Extracellular matrix p 99.6 1.1E-15 2.4E-20 142.1 1.9 287 203-548 68-359 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 2.4E-14 5.3E-19 151.7 11.1 94 230-341 200-293 (754)
19 KOG0617 Ras suppressor protein 99.5 1.9E-16 4.1E-21 130.3 -5.1 152 201-369 32-184 (264)
20 PRK15387 E3 ubiquitin-protein 99.5 2.4E-13 5.3E-18 143.3 10.4 257 178-528 204-462 (788)
21 KOG4658 Apoptotic ATPase [Sign 99.4 1.3E-13 2.8E-18 148.5 6.3 153 201-367 522-677 (889)
22 PRK15370 E3 ubiquitin-protein 99.4 7.9E-13 1.7E-17 140.3 9.0 140 175-344 178-317 (754)
23 KOG4237 Extracellular matrix p 99.4 7.3E-14 1.6E-18 130.1 -0.1 130 175-318 67-199 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 8.4E-13 1.8E-17 129.7 -4.1 281 201-546 22-318 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 3.3E-12 7.1E-17 125.5 -4.6 256 221-550 15-293 (319)
26 KOG0532 Leucine-rich repeat (L 99.0 3.2E-11 7E-16 117.8 -3.7 175 201-416 74-248 (722)
27 COG4886 Leucine-rich repeat (L 98.8 4.4E-09 9.6E-14 106.4 6.4 176 225-456 112-288 (394)
28 PF14580 LRR_9: Leucine-rich r 98.8 4.4E-09 9.6E-14 91.1 5.4 126 201-342 18-151 (175)
29 PF14580 LRR_9: Leucine-rich r 98.8 9.4E-10 2E-14 95.3 1.1 109 225-345 15-127 (175)
30 KOG3207 Beta-tubulin folding c 98.7 6.2E-09 1.3E-13 99.0 3.2 158 175-344 121-284 (505)
31 KOG0532 Leucine-rich repeat (L 98.7 6.4E-10 1.4E-14 108.9 -4.9 129 201-345 120-248 (722)
32 PLN03150 hypothetical protein; 98.6 1.1E-07 2.4E-12 100.9 8.6 104 230-340 419-524 (623)
33 COG4886 Leucine-rich repeat (L 98.6 4.5E-08 9.7E-13 99.1 5.1 171 175-368 116-287 (394)
34 KOG3207 Beta-tubulin folding c 98.6 7.1E-09 1.5E-13 98.7 -0.9 88 424-522 248-337 (505)
35 KOG1259 Nischarin, modulator o 98.6 1.4E-08 3.1E-13 91.9 0.5 128 227-368 282-409 (490)
36 KOG1259 Nischarin, modulator o 98.5 1.4E-08 3.1E-13 91.9 0.1 129 200-344 282-412 (490)
37 PLN03150 hypothetical protein; 98.5 2.3E-07 4.9E-12 98.6 7.0 89 260-348 419-507 (623)
38 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5.1E-12 65.8 4.0 56 230-293 2-59 (61)
39 PF13855 LRR_8: Leucine rich r 98.3 5.3E-07 1.1E-11 63.9 3.5 58 259-318 1-60 (61)
40 KOG4341 F-box protein containi 98.1 2.2E-07 4.8E-12 88.2 -1.9 141 399-550 291-441 (483)
41 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 8.1E-11 54.5 3.6 33 260-293 2-34 (44)
42 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 86.5 -5.1 81 230-317 186-270 (419)
43 KOG1909 Ran GTPase-activating 98.1 2.6E-07 5.7E-12 85.8 -2.9 38 280-317 89-130 (382)
44 KOG0531 Protein phosphatase 1, 98.1 1.1E-06 2.3E-11 89.3 1.0 128 201-344 71-199 (414)
45 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 53.8 3.6 41 229-277 1-41 (44)
46 KOG1859 Leucine-rich repeat pr 98.0 3.5E-07 7.5E-12 92.7 -3.4 118 244-369 172-290 (1096)
47 KOG4579 Leucine-rich repeat (L 97.9 4.4E-06 9.5E-11 67.2 0.9 84 225-317 49-133 (177)
48 PRK15386 type III secretion pr 97.8 2.2E-05 4.9E-10 76.7 4.3 28 248-277 85-112 (426)
49 KOG0531 Protein phosphatase 1, 97.7 8.4E-06 1.8E-10 82.8 1.0 105 198-317 91-196 (414)
50 KOG2120 SCF ubiquitin ligase, 97.7 2E-06 4.3E-11 78.3 -3.5 83 203-294 186-271 (419)
51 PRK15386 type III secretion pr 97.7 8.6E-05 1.9E-09 72.7 6.9 140 396-546 46-188 (426)
52 KOG4341 F-box protein containi 97.7 4.8E-06 1E-10 79.4 -1.8 129 400-540 318-457 (483)
53 KOG3665 ZYG-1-like serine/thre 97.6 5.9E-05 1.3E-09 80.2 3.9 138 259-414 122-262 (699)
54 KOG3665 ZYG-1-like serine/thre 97.5 0.00012 2.7E-09 77.8 5.8 130 175-318 122-261 (699)
55 KOG1909 Ran GTPase-activating 97.5 0.00011 2.4E-09 68.8 4.4 162 201-368 29-223 (382)
56 KOG2982 Uncharacterized conser 97.5 0.00014 3.1E-09 66.5 4.6 83 227-317 69-156 (418)
57 KOG4579 Leucine-rich repeat (L 97.4 4.1E-05 8.9E-10 61.7 0.8 90 201-302 52-141 (177)
58 KOG1859 Leucine-rich repeat pr 97.4 8.5E-06 1.8E-10 83.0 -4.8 108 222-342 180-290 (1096)
59 KOG2982 Uncharacterized conser 97.2 8.3E-05 1.8E-09 68.0 -0.4 83 443-541 197-285 (418)
60 KOG1644 U2-associated snRNP A' 97.1 0.00044 9.5E-09 59.9 3.3 102 261-366 44-148 (233)
61 COG5238 RNA1 Ran GTPase-activa 96.5 0.00033 7.1E-09 63.3 -1.8 44 278-322 87-134 (388)
62 KOG1644 U2-associated snRNP A' 96.5 0.0048 1E-07 53.6 5.2 99 204-316 44-149 (233)
63 PF00560 LRR_1: Leucine Rich R 96.0 0.0023 5E-08 34.3 0.6 17 261-278 2-18 (22)
64 KOG2123 Uncharacterized conser 96.0 0.001 2.2E-08 60.5 -1.4 99 201-313 18-123 (388)
65 KOG2739 Leucine-rich acidic nu 96.0 0.0027 5.9E-08 57.5 1.2 61 257-318 63-127 (260)
66 KOG1947 Leucine rich repeat pr 96.0 0.0014 3E-08 68.4 -1.0 63 257-319 186-255 (482)
67 KOG2739 Leucine-rich acidic nu 95.8 0.0057 1.2E-07 55.4 2.4 83 225-317 61-153 (260)
68 KOG2123 Uncharacterized conser 95.8 0.0011 2.3E-08 60.4 -2.4 103 227-340 17-126 (388)
69 PF00560 LRR_1: Leucine Rich R 95.1 0.013 2.9E-07 31.3 1.4 22 230-258 1-22 (22)
70 KOG0473 Leucine-rich repeat pr 94.2 0.0038 8.3E-08 55.3 -3.2 84 225-317 38-121 (326)
71 PF13504 LRR_7: Leucine rich r 94.0 0.03 6.5E-07 27.8 1.1 17 511-528 1-17 (17)
72 PF13504 LRR_7: Leucine rich r 94.0 0.036 7.9E-07 27.5 1.3 16 260-276 2-17 (17)
73 PF13306 LRR_5: Leucine rich r 93.8 0.12 2.6E-06 42.6 5.2 102 198-316 8-112 (129)
74 KOG0473 Leucine-rich repeat pr 93.1 0.004 8.7E-08 55.2 -5.0 92 248-342 30-122 (326)
75 KOG3864 Uncharacterized conser 92.9 0.012 2.7E-07 51.2 -2.3 66 441-521 121-186 (221)
76 KOG3864 Uncharacterized conser 92.2 0.017 3.6E-07 50.4 -2.4 64 479-546 123-187 (221)
77 COG5238 RNA1 Ran GTPase-activa 92.2 0.2 4.4E-06 45.9 4.3 94 201-298 29-134 (388)
78 KOG1947 Leucine rich repeat pr 90.9 0.037 8.1E-07 57.6 -2.0 15 401-415 187-201 (482)
79 smart00369 LRR_TYP Leucine-ric 90.7 0.22 4.7E-06 27.8 2.0 19 259-278 2-20 (26)
80 smart00370 LRR Leucine-rich re 90.7 0.22 4.7E-06 27.8 2.0 19 259-278 2-20 (26)
81 PRK04841 transcriptional regul 88.4 2.8 6.1E-05 47.7 10.5 123 3-150 208-332 (903)
82 PF13306 LRR_5: Leucine rich r 83.6 1.8 3.9E-05 35.5 4.4 113 176-309 13-128 (129)
83 smart00369 LRR_TYP Leucine-ric 83.3 0.86 1.9E-05 25.3 1.6 21 228-255 1-21 (26)
84 smart00370 LRR Leucine-rich re 83.3 0.86 1.9E-05 25.3 1.6 21 228-255 1-21 (26)
85 smart00367 LRR_CC Leucine-rich 79.6 1.2 2.5E-05 24.8 1.2 15 511-525 2-16 (26)
86 smart00364 LRR_BAC Leucine-ric 75.2 1.8 3.9E-05 24.1 1.1 17 260-277 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 60.9 6.4 0.00014 22.0 1.4 12 259-270 2-13 (26)
88 PF13516 LRR_6: Leucine Rich r 55.5 7.7 0.00017 20.8 1.2 11 511-521 2-12 (24)
89 smart00368 LRR_RI Leucine rich 44.0 16 0.00035 20.7 1.4 11 260-270 3-13 (28)
90 PRK00080 ruvB Holliday junctio 38.3 1.2E+02 0.0027 29.5 7.6 105 2-126 204-311 (328)
91 PF14162 YozD: YozD-like prote 34.4 72 0.0016 21.0 3.3 32 90-123 20-51 (57)
92 PF13730 HTH_36: Helix-turn-he 33.4 14 0.00031 24.8 0.0 51 61-122 2-55 (55)
93 TIGR00635 ruvB Holliday juncti 33.4 1.2E+02 0.0025 29.2 6.5 105 2-126 183-290 (305)
94 KOG3763 mRNA export factor TAP 21.5 33 0.00071 35.4 0.2 40 442-491 215-254 (585)
95 PF14050 Nudc_N: N-terminal co 21.5 1.2E+02 0.0026 21.2 2.9 26 4-29 8-33 (62)
96 PF15385 SARG: Specifically an 20.2 51 0.0011 33.9 1.2 16 58-73 7-22 (497)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-55 Score=464.38 Aligned_cols=481 Identities=28% Similarity=0.454 Sum_probs=344.7
Q ss_pred ChHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhh----hhhcccchhHHHHhhccCChhhhHHHhhhcCC
Q 039861 1 KIGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWEL----EAIKKGLLAPLLLSYNELPSKVKQCFTYCAVF 76 (557)
Q Consensus 1 ~i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~f 76 (557)
++|++||++|+|||||+++||+.|+.|.+.++|+++.+.+.+.. ....+.|+++|++|||.||++.|.||+|||.|
T Consensus 343 ~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalF 422 (889)
T KOG4658|consen 343 ELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALF 422 (889)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccC
Confidence 47999999999999999999999999999999999999765542 22346799999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHHcCCcCc-CCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEechHHHHHHHHhcc----
Q 039861 77 PKDYDIQKEELIELWMAQGYLSE-KGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKMHDIVHDFAQYLCS---- 151 (557)
Q Consensus 77 p~~~~i~~~~li~~w~a~g~~~~-~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~~~~~i~~---- 151 (557)
|+||.|+++.|+.+|+||||+.+ +++.+++|+|++|+.+|++++|++..... ++...|+|||+||+||.++|+
T Consensus 423 PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 423 PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccc
Confidence 99999999999999999999988 44688999999999999999999987654 677789999999999999999
Q ss_pred -cceEEEeccCCCCCCCcccccccCceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCc
Q 039861 152 -NECLTVEIHSGSSEESTMSSFEEKKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTC 230 (557)
Q Consensus 152 -~e~~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~ 230 (557)
++..++....+. .+.+ ...++..+|++++..+....++.... ++.|++|.+..|.. +.....+..|..++.
T Consensus 501 ~~e~~iv~~~~~~-~~~~-~~~~~~~~rr~s~~~~~~~~~~~~~~-----~~~L~tLll~~n~~-~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 501 QEENQIVSDGVGL-SEIP-QVKSWNSVRRMSLMNNKIEHIAGSSE-----NPKLRTLLLQRNSD-WLLEISGEFFRSLPL 572 (889)
T ss_pred cccceEEECCcCc-cccc-cccchhheeEEEEeccchhhccCCCC-----CCccceEEEeecch-hhhhcCHHHHhhCcc
Confidence 666555443221 1122 22333789999999998876554432 66899999999863 244445666889999
Q ss_pred eeEEEeccccCCCC-cCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCC
Q 039861 231 LRALNLKVRKPWSS-VNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKL 309 (557)
Q Consensus 231 L~~L~L~~~~~~~~-~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L 309 (557)
||+||| + +..+.++|++|+.|.+||||+++++. +..+|..+++|++|.+|++..+..+..+|.....|++|
T Consensus 573 LrVLDL-------s~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 573 LRVLDL-------SGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred eEEEEC-------CCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 999999 5 44578999999999999999999999 99999999999999999999988777787766779999
Q ss_pred cEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCc
Q 039861 310 MYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLD 389 (557)
Q Consensus 310 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~ 389 (557)
++|.+.... ...-...++++.+|++|......... ...+..+..++.|+.+...-.. . . .
T Consensus 645 r~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s--~~~~e~l~~~~~L~~~~~~l~~-------------~---~-~ 704 (889)
T KOG4658|consen 645 RVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS--VLLLEDLLGMTRLRSLLQSLSI-------------E---G-C 704 (889)
T ss_pred cEEEeeccc-cccchhhHHhhhcccchhhheeecch--hHhHhhhhhhHHHHHHhHhhhh-------------c---c-c
Confidence 999997652 11111234455555555554443322 1112223233333221111000 0 0 0
Q ss_pred hHHhhhhcCCCCCCccEEEEeecCCcCCCCCccccc------------CccccCccccCCCCCCCCCCCcCeeeeccccC
Q 039861 390 EDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIM------------DLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQS 457 (557)
Q Consensus 390 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~------------~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 457 (557)
........+..+.+|+.|.+.++.+.. ....|.. .+...+|.....+.+..-.|+|+.|.+..|..
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e--~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISE--IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCch--hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 112334566778999999999998765 2123311 12445666666666666789999999999988
Q ss_pred ceEecccccCCCCCCCCcccccccccccc-cccccccccccccccccccccccCCccceeeeccCccccCCCC
Q 039861 458 VKRVGNEFLGVESDTDGSSVIAFPKLKKL-EFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD 529 (557)
Q Consensus 458 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 529 (557)
++.+.......... ...+..|+++..+ .+.+.+.+..+.. .--.+++|+.+.+..||+++.+|.
T Consensus 783 ~e~~i~~~k~~~~l--~~~i~~f~~~~~l~~~~~l~~l~~i~~------~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 783 LEDIIPKLKALLEL--KELILPFNKLEGLRMLCSLGGLPQLYW------LPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred cccCCCHHHHhhhc--ccEEecccccccceeeecCCCCceeEe------cccCccchhheehhcCcccccCcc
Confidence 77664432111100 0012345556666 3555555444432 112345588888888887777664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-47 Score=427.42 Aligned_cols=490 Identities=21% Similarity=0.287 Sum_probs=274.0
Q ss_pred ChHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhhhhcccchhHHHHhhccCCh-hhhHHHhhhcCCCCC
Q 039861 1 KIGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELEAIKKGLLAPLLLSYNELPS-KVKQCFTYCAVFPKD 79 (557)
Q Consensus 1 ~i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~a~fp~~ 79 (557)
+++++||++|+|+||||+++|+.|+++ +.++|+.+++++.+ ..+.+|.++|++|||+|++ .+|.||+||||||.+
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~---~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~ 451 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN---GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNG 451 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh---CccHHHHHHHHHhhhccCccchhhhhheehhhcCC
Confidence 368999999999999999999999988 57899999997653 2345799999999999987 599999999999999
Q ss_pred CccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEechHHHHHHHHhcccce-----
Q 039861 80 YDIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKMHDIVHDFAQYLCSNEC----- 154 (557)
Q Consensus 80 ~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~~~~~i~~~e~----- 154 (557)
+++ +. +..|.|.+..... .-++.|++++||+.... +++|||++|+||+++++++.
T Consensus 452 ~~~--~~-v~~~l~~~~~~~~----------~~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~ 511 (1153)
T PLN03210 452 EKV--ND-IKLLLANSDLDVN----------IGLKNLVDKSLIHVRED-------IVEMHSLLQEMGKEIVRAQSNEPGE 511 (1153)
T ss_pred CCH--HH-HHHHHHhcCCCch----------hChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHHHHHhhcCCCCc
Confidence 764 33 5566665544321 12888999999987431 48999999999999987753
Q ss_pred -EEEeccCCCCCCCcccccccCceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCcc---chhhhhHHHHhcCC-
Q 039861 155 -LTVEIHSGSSEESTMSSFEEKKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYS---WSSEVLPQLFDKLT- 229 (557)
Q Consensus 155 -~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~p~~~~~l~- 229 (557)
.+++..... ............++.+++......++.. ...+|.++++|+.|.+..+... .....+|..|..++
T Consensus 512 r~~l~~~~di-~~vl~~~~g~~~v~~i~l~~~~~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~ 589 (1153)
T PLN03210 512 REFLVDAKDI-CDVLEDNTGTKKVLGITLDIDEIDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP 589 (1153)
T ss_pred ceeEeCHHHH-HHHHHhCcccceeeEEEeccCccceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCc
Confidence 111111000 0000000111556777766554433211 1234556777777777544210 01111333333332
Q ss_pred ceeEEEeccccCC---------------CCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCcc
Q 039861 230 CLRALNLKVRKPW---------------SSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCE 294 (557)
Q Consensus 230 ~L~~L~L~~~~~~---------------~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 294 (557)
.||+|++.++... -.++.+..+|.++..+++|++|+|+++..+..+|. ++.+++|++|++++|.
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence 3455544000000 04444555555555555555555555544555553 5555555555555555
Q ss_pred ccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCCh
Q 039861 295 NLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDA 374 (557)
Q Consensus 295 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~ 374 (557)
.+..+|..++++++|++|++++|..++.+|..+ ++++|+.|.+.++.... .+.. ..++|+.|.+.+......+
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~----~~p~--~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK----SFPD--ISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc----cccc--ccCCcCeeecCCCcccccc
Confidence 555555555555555555555555555555544 45555555544432211 0100 0122333333322110000
Q ss_pred hHHHHhhccCCCCCchHH----hhhh--------cCCCCCCccEEEEeecCCcCCCCCccc------ccCccccCccccC
Q 039861 375 GEARRAELEKKKNLDEDE----RLLE--------ALGPPPNLKKLQIYDYRGRRNVVPKNW------IMDLSLFRCRNCE 436 (557)
Q Consensus 375 ~~~~~~~l~~l~~l~~~~----~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~~------l~~L~l~~~~~~~ 436 (557)
... .+.++..+.... .... ....+++|+.|++++|..... + |.+ |..|++.+|..++
T Consensus 742 ~~~---~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 742 SNL---RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccc---cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-c-ChhhhCCCCCCEEECCCCCCcC
Confidence 000 111111111000 0000 001123455555555433221 1 111 2233445555444
Q ss_pred CCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccee
Q 039861 437 HLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSL 516 (557)
Q Consensus 437 ~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 516 (557)
.+|....+++|+.|++++|..++.++. ..++|+.|+++++ .++ .+|..+..+++|+.|
T Consensus 817 ~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------------~~~nL~~L~Ls~n-~i~------~iP~si~~l~~L~~L 874 (1153)
T PLN03210 817 TLPTGINLESLESLDLSGCSRLRTFPD---------------ISTNISDLNLSRT-GIE------EVPWWIEKFSNLSFL 874 (1153)
T ss_pred eeCCCCCccccCEEECCCCCccccccc---------------cccccCEeECCCC-CCc------cChHHHhcCCCCCEE
Confidence 454433455555555555544433321 1235556666553 222 356788899999999
Q ss_pred eeccCccccCCCCCcCCCCCcceEEEecCCCcccc
Q 039861 517 SIQSCPKLKALPDHLLQKSTLQKLEIWGCPILKER 551 (557)
Q Consensus 517 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 551 (557)
++++|++++.+|..+..+++|+.+++++|++|...
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 99999999999998888999999999999998643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2e-24 Score=243.26 Aligned_cols=207 Identities=23% Similarity=0.251 Sum_probs=91.6
Q ss_pred CcCccc-ccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCc
Q 039861 244 SVNDIK-EIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRY 322 (557)
Q Consensus 244 ~~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ 322 (557)
++|.+. .+|..++++.+|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.....
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 344433 3445555555555555555543334555555555555555555554444555555555555555555544344
Q ss_pred ccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCch-----HHhhhhc
Q 039861 323 LPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDE-----DERLLEA 397 (557)
Q Consensus 323 ~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~-----~~~~~~~ 397 (557)
+|..++++++|++|++..+...... ...+..+++|+.|.+......... ......+.+++.+.. ....+..
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPI---PSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CChhHhcCCCCCEEECcCceecccc---ChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCChh
Confidence 5555555555555555444332211 112333334444444332111100 001112222222221 1122333
Q ss_pred CCCCCCccEEEEeecCCcCCCCCccc------ccCccccCccccCCCCC-CCCCCCcCeeeecccc
Q 039861 398 LGPPPNLKKLQIYDYRGRRNVVPKNW------IMDLSLFRCRNCEHLPP-LGKLPSLEYLEIEGMQ 456 (557)
Q Consensus 398 l~~~~~L~~L~l~~~~~~~~~~~~~~------l~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~ 456 (557)
+..+++|+.|++++|.... ..|.+ ++.|++.+|.....+|. ++.+++|+.|+++++.
T Consensus 304 ~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred HcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 4455566666666555443 11222 23345555544444443 5555666666665543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3.9e-24 Score=240.88 Aligned_cols=342 Identities=19% Similarity=0.213 Sum_probs=185.8
Q ss_pred CceEEEEEEecCCCC-cccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc-ccc
Q 039861 175 KKIRHLMLIVRGRAS-VPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-EIP 252 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-~lp 252 (557)
..++.|.+..+.... +|.. +.++++|+.|++.+|. ....+|..++++++|++|++ ++|.+. .+|
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L-------~~n~l~~~~p 253 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNN---LSGEIPYEIGGLTSLNHLDL-------VYNNLTGPIP 253 (968)
T ss_pred cCCCeeeccCCCCcCcCChH----HcCcCCccEEECcCCc---cCCcCChhHhcCCCCCEEEC-------cCceeccccC
Confidence 456666666655432 2322 2336677777776665 33345666666667777776 555544 456
Q ss_pred hhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccc
Q 039861 253 TNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIR 332 (557)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~ 332 (557)
..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|++|++++|.....+|..++.+++
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 66666666666666666533355666666666666666666544455655666666666666666444455555555666
Q ss_pred ccccCceEecCccCCccCccccccCCcCCCceecCCC------------------------CCCChhHHHHhhccCCCCC
Q 039861 333 LRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLG------------------------GVSDAGEARRAELEKKKNL 388 (557)
Q Consensus 333 L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~------------------------~~~~~~~~~~~~l~~l~~l 388 (557)
|+.|++..+......+. .+..+++|+.++++... ..... ......+.+++.+
T Consensus 334 L~~L~L~~n~l~~~~p~---~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~L 409 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPK---NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI-PKSLGACRSLRRV 409 (968)
T ss_pred CCEEECcCCCCcCcCCh---HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC-CHHHhCCCCCCEE
Confidence 66655555443321111 12222233333322211 00000 0011112222222
Q ss_pred chH-----HhhhhcCCCCCCccEEEEeecCCcCCC----------------------CCcc-----cccCccccCccccC
Q 039861 389 DED-----ERLLEALGPPPNLKKLQIYDYRGRRNV----------------------VPKN-----WIMDLSLFRCRNCE 436 (557)
Q Consensus 389 ~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~----------------------~~~~-----~l~~L~l~~~~~~~ 436 (557)
... ...+..+..+++|+.|++++|.+.... ..|. .+..|++++|....
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCC
Confidence 211 122233444555555555555443310 0011 12334444444333
Q ss_pred CCCC-CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccce
Q 039861 437 HLPP-LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSS 515 (557)
Q Consensus 437 ~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~ 515 (557)
.+|. +..+++|+.|++++|.-...+|.. +..+++|+.|++++|.. .+.+|..+..+++|+.
T Consensus 490 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------------~~~l~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 490 AVPRKLGSLSELMQLKLSENKLSGEIPDE------------LSSCKKLVSLDLSHNQL------SGQIPASFSEMPVLSQ 551 (968)
T ss_pred ccChhhhhhhccCEEECcCCcceeeCChH------------HcCccCCCEEECCCCcc------cccCChhHhCcccCCE
Confidence 3332 445555555555554422223222 34678899999988654 2334677888999999
Q ss_pred eeeccCccccCCCCCcCCCCCcceEEEecCCCccccc
Q 039861 516 LSIQSCPKLKALPDHLLQKSTLQKLEIWGCPILKERV 552 (557)
Q Consensus 516 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~ 552 (557)
|++++|.....+|..+.++++|+.+++++|+....++
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999998777899988889999999999998765544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.1e-26 Score=221.71 Aligned_cols=320 Identities=24% Similarity=0.292 Sum_probs=234.9
Q ss_pred ccCceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc
Q 039861 173 EEKKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP 252 (557)
Q Consensus 173 ~~~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp 252 (557)
..+++.|+++..+....+..+..+ ++.||++++..|.... .+ +|..+-.++.|.+||| +.|.+.+.|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~----Lp~LRsv~~R~N~LKn-sG-iP~diF~l~dLt~lDL-------ShNqL~EvP 119 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSD----LPRLRSVIVRDNNLKN-SG-IPTDIFRLKDLTILDL-------SHNQLREVP 119 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhcc----chhhHHHhhhcccccc-CC-CCchhcccccceeeec-------chhhhhhcc
Confidence 336778888888777766555555 8899999888887532 34 4555668999999999 889999999
Q ss_pred hhhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 253 TNIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
..+.+-+++-+|+|++|+ |+.+| +-+.+|+.|-+||+++|+ +..+|+.+..|.+|++|.|++|.....--..+..|+
T Consensus 120 ~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred hhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence 989999999999999988 89998 456789999999999877 899999999999999999998842211112233567
Q ss_pred cccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEee
Q 039861 332 RLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~ 411 (557)
+|++|.+++....- .....++..|.+|+.++++..+ ++ .+++.+-.+++|+.|+|++
T Consensus 198 sL~vLhms~TqRTl--~N~Ptsld~l~NL~dvDlS~N~-Lp--------------------~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTL--DNIPTSLDDLHNLRDVDLSENN-LP--------------------IVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhhcccccchh--hcCCCchhhhhhhhhccccccC-CC--------------------cchHHHhhhhhhheeccCc
Confidence 77777776655432 2233455566666666665432 11 2455666788999999999
Q ss_pred cCCcCCCCC-ccc--ccCccccCccccCCCCC-CCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccc
Q 039861 412 YRGRRNVVP-KNW--IMDLSLFRCRNCEHLPP-LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLE 487 (557)
Q Consensus 412 ~~~~~~~~~-~~~--l~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 487 (557)
|.+.+.... ..| +..|+++.+ .+..+|. +.+++.|+.|.+.++. + .|.|. +++++.+.+|+.+.
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L-----~FeGi-----PSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-L-----TFEGI-----PSGIGKLIQLEVFH 322 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-c-----cccCC-----ccchhhhhhhHHHH
Confidence 987762111 223 556777776 4567776 8899999999987643 2 23343 24477888899998
Q ss_pred ccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCccc
Q 039861 488 FRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPILKE 550 (557)
Q Consensus 488 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 550 (557)
..+ +.|+.. |.+++.+++|+.|.+..| .|..+|+.+.-++.|+.||+++||+|.-
T Consensus 323 aan-N~LElV------PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 323 AAN-NKLELV------PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhc-cccccC------chhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccC
Confidence 888 555554 678999999999999988 5888999888899999999999999853
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.4e-25 Score=215.40 Aligned_cols=313 Identities=21% Similarity=0.255 Sum_probs=250.2
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc--ccc
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK--EIP 252 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~--~lp 252 (557)
.+++++.+.......+|.+... +.+|..|.+..|.. .. +-..++.++.||.+++ ..|.++ .+|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~----lqkLEHLs~~HN~L---~~-vhGELs~Lp~LRsv~~-------R~N~LKnsGiP 96 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSR----LQKLEHLSMAHNQL---IS-VHGELSDLPRLRSVIV-------RDNNLKNSGIP 96 (1255)
T ss_pred hheeEEEechhhhhhChHHHHH----Hhhhhhhhhhhhhh---Hh-hhhhhccchhhHHHhh-------hccccccCCCC
Confidence 6788999988888888888776 99999999999973 33 2333778899999999 777765 589
Q ss_pred hhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccc-cCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 253 TNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGI-GKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
..|-.|..|.+|+|++|+ +.+.|..+...+++-+|++++|+ +..+|..+ -+|+-|-.|+|++| .+..+|+.+..|.
T Consensus 97 ~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLS 173 (1255)
T ss_pred chhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHh
Confidence 999999999999999999 99999999999999999999977 99999765 78999999999998 8899999999999
Q ss_pred cccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEee
Q 039861 332 RLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~ 411 (557)
+|++|.+.++... ...+..|..++.|..|++++.... ..+++.++..+.+|..++++.
T Consensus 174 ~LqtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqRT-------------------l~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNTQRT-------------------LDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhhhhhcCCChhh---HHHHhcCccchhhhhhhcccccch-------------------hhcCCCchhhhhhhhhccccc
Confidence 9999999888755 345667777777877777765432 235667788889999999999
Q ss_pred cCCcCCCCCccc-----ccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccc
Q 039861 412 YRGRRNVVPKNW-----IMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKL 486 (557)
Q Consensus 412 ~~~~~~~~~~~~-----l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 486 (557)
|.... +|... +..|+++++...+---..+...+|++|+++.+. ++.+|..+ ..+++|+.|
T Consensus 232 N~Lp~--vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~av------------cKL~kL~kL 296 (1255)
T KOG0444|consen 232 NNLPI--VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAV------------CKLTKLTKL 296 (1255)
T ss_pred cCCCc--chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHH------------hhhHHHHHH
Confidence 98766 53222 344677766432221224556678888888744 66666543 358899999
Q ss_pred cccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 487 EFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 487 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
.+.+ +.|. ...+|++++.+.+|+.+...+| +|.-+|+++..+..|+.|.++.|..+
T Consensus 297 y~n~-NkL~----FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 297 YANN-NKLT----FEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred Hhcc-Cccc----ccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee
Confidence 9987 4554 4567999999999999999998 79999999999999999999888644
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=3.5e-21 Score=217.21 Aligned_cols=306 Identities=20% Similarity=0.255 Sum_probs=217.0
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcC-cccccch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVN-DIKEIPT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~lp~ 253 (557)
..+|.+.+..+....+|..+ . ..+|+.|++.++.+ .. +|..+..+++|++|+| +++ .+..+|.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~----~~~L~~L~L~~s~l---~~-L~~~~~~l~~Lk~L~L-------s~~~~l~~ip~ 652 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-R----PENLVKLQMQGSKL---EK-LWDGVHSLTGLRNIDL-------RGSKNLKEIPD 652 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-C----ccCCcEEECcCccc---cc-cccccccCCCCCEEEC-------CCCCCcCcCCc
Confidence 34666666665555555443 2 67888888888763 22 5666788999999999 543 4677875
Q ss_pred hhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL 333 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 333 (557)
++.+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+ ++++|++|++++|..++.+|.. ..+|
T Consensus 653 -ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL 727 (1153)
T PLN03210 653 -LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNI 727 (1153)
T ss_pred -cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCc
Confidence 8899999999999998899999999999999999999999999999876 8999999999999888888754 3567
Q ss_pred cccCceEecCccCCccCccccccCCcCCCceecCCCC------CCChhHHHHhhccCCCCCch-----HHhhhhcCCCCC
Q 039861 334 RRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGG------VSDAGEARRAELEKKKNLDE-----DERLLEALGPPP 402 (557)
Q Consensus 334 ~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~------~~~~~~~~~~~l~~l~~l~~-----~~~~~~~l~~~~ 402 (557)
+.|++..+.... ++..-.+++|..|.+..+.. .............+++.+.. ...++..++.++
T Consensus 728 ~~L~L~~n~i~~-----lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~ 802 (1153)
T PLN03210 728 SWLDLDETAIEE-----FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802 (1153)
T ss_pred CeeecCCCcccc-----ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence 778776665432 11111344454444433211 00000011111123333332 223566788899
Q ss_pred CccEEEEeecCCcCCCCCc----ccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccc
Q 039861 403 NLKKLQIYDYRGRRNVVPK----NWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVI 478 (557)
Q Consensus 403 ~L~~L~l~~~~~~~~~~~~----~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 478 (557)
+|+.|++++|...+. +|. ..+..|++++|..+..+|.+ .++|+.|+++++ .++.+|.. +.
T Consensus 803 ~L~~L~Ls~C~~L~~-LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP~s------------i~ 866 (1153)
T PLN03210 803 KLEHLEIENCINLET-LPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVPWW------------IE 866 (1153)
T ss_pred CCCEEECCCCCCcCe-eCCCCCccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccChHH------------Hh
Confidence 999999999865542 322 23566899999888887764 468999999874 35555543 45
Q ss_pred cccccccccccccccccccccccccccccccCCccceeeeccCccccCCC
Q 039861 479 AFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALP 528 (557)
Q Consensus 479 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 528 (557)
.+++|+.|++.+|+.|+.++ ..+..+++|+.|++++|+.++.++
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~------~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVS------LNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCCCCCEEECCCCCCcCccC------cccccccCCCeeecCCCccccccc
Confidence 68999999999999988754 467789999999999999888654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2e-22 Score=194.92 Aligned_cols=334 Identities=19% Similarity=0.272 Sum_probs=173.8
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-h
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-T 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~ 253 (557)
...+.|.+.++....+.... |.++++|+.+.+..|.. . .+|.......+|+.|+| ..|.|.++- +
T Consensus 78 ~~t~~LdlsnNkl~~id~~~---f~nl~nLq~v~l~~N~L---t-~IP~f~~~sghl~~L~L-------~~N~I~sv~se 143 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEF---FYNLPNLQEVNLNKNEL---T-RIPRFGHESGHLEKLDL-------RHNLISSVTSE 143 (873)
T ss_pred cceeeeeccccccccCcHHH---HhcCCcceeeeeccchh---h-hcccccccccceeEEee-------eccccccccHH
Confidence 56666777776665544332 23377777777777752 2 24553344455777777 666666654 4
Q ss_pred hhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCcccc-cccCc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYLPV-GIGEL 330 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L 330 (557)
++..+..||.|||+.|. |.++| .++..-.++++|+|++|. ++.+- ..+..+.+|..|.|+.| .++.+|. .|.+|
T Consensus 144 ~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L 220 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRL 220 (873)
T ss_pred HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhc
Confidence 56667777777777776 66666 445555677777777766 55543 34666777777777777 4555553 45557
Q ss_pred ccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhh-----hhcCCCCCCcc
Q 039861 331 IRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERL-----LEALGPPPNLK 405 (557)
Q Consensus 331 ~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~-----~~~l~~~~~L~ 405 (557)
.+|+.|++..+.........+..|.+|.+|+ +.. +.+....+..+..+.+++.+....+. -.++-+++.|+
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlk---lqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLK---LQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhh---hhh-cCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence 7777777777665543333444444443322 211 11111222222233333333322111 12334455566
Q ss_pred EEEEeecCCcCCCCCccc-----ccCccccCccccCCCCC--CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccc
Q 039861 406 KLQIYDYRGRRNVVPKNW-----IMDLSLFRCRNCEHLPP--LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVI 478 (557)
Q Consensus 406 ~L~l~~~~~~~~~~~~~~-----l~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 478 (557)
.|+++.|.+....+ ..| ++.|+|+++. ++.+++ +..|..|++|+|+++. +..+.+.. +.
T Consensus 297 ~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a-----------f~ 362 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA-----------FV 362 (873)
T ss_pred hhccchhhhheeec-chhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccc-hHHHHhhH-----------HH
Confidence 66666655544211 233 3334555443 222332 4555556666665532 33332211 22
Q ss_pred cccccccccccccccccccccccccccccccCCccceeeeccCccccCCCC-CcCCCCCcceEEEecCCC
Q 039861 479 AFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD-HLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 479 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 547 (557)
++.+|++|+|+.+. +. |.. .+....+..+++|+.|.+.+| +++.+|. .+..+++|++||+.+|+.
T Consensus 363 ~lssL~~LdLr~N~-ls-~~I-EDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNE-LS-WCI-EDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred HhhhhhhhcCcCCe-EE-EEE-ecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 45566666665532 21 111 112233444666666666666 4666664 344466666666666654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.7e-22 Score=191.75 Aligned_cols=334 Identities=20% Similarity=0.239 Sum_probs=189.2
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-h
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-T 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~ 253 (557)
..+..+.+..+....+|.-... ..+|..|++.+|.+ ..+-.+.+..+..||.||| +.|.|.++| .
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~----sghl~~L~L~~N~I---~sv~se~L~~l~alrslDL-------SrN~is~i~~~ 167 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHE----SGHLEKLDLRHNLI---SSVTSEELSALPALRSLDL-------SRNLISEIPKP 167 (873)
T ss_pred Ccceeeeeccchhhhccccccc----ccceeEEeeecccc---ccccHHHHHhHhhhhhhhh-------hhchhhcccCC
Confidence 3455555555555554443322 44566666666652 2223334555566666666 555555555 3
Q ss_pred hhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCcc-cccccCc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYL-PVGIGEL 330 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~-p~~i~~L 330 (557)
++..=.++++|+|++|. |+.+- ..|..+.+|-+|.|+.|+ +..+|.- +.+|++|+.|+|..| .++.+ --.|..|
T Consensus 168 sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL 244 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCc
Confidence 34444556666666665 55553 445555666666666654 5555532 344666666666555 33333 1234555
Q ss_pred ccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCch-----HHhhhhcCCCCCCcc
Q 039861 331 IRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDE-----DERLLEALGPPPNLK 405 (557)
Q Consensus 331 ~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~-----~~~~~~~l~~~~~L~ 405 (557)
.+|+.|.+..++........+-.+.++..| .+.. +.+........-.++.++.+.. .....+.++..++|+
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l---~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHL---NLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeeccccee---eccc-chhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 566666555554433222333333332222 1111 1111111111112222333321 122345677789999
Q ss_pred EEEEeecCCcCCCCCcccc------cCccccCccccCCCCC--CCCCCCcCeeeeccccCceEecccccCCCCCCCCccc
Q 039861 406 KLQIYDYRGRRNVVPKNWI------MDLSLFRCRNCEHLPP--LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSV 477 (557)
Q Consensus 406 ~L~l~~~~~~~~~~~~~~l------~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 477 (557)
+|+|+.|.+.. +++..+ +.|+|+.+. ++.+.. +..+.+|++|+|+++.---.+.+... ..
T Consensus 321 ~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~---------~f 388 (873)
T KOG4194|consen 321 ELDLSSNRITR--LDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV---------AF 388 (873)
T ss_pred eEecccccccc--CChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh---------hh
Confidence 99999999988 766654 345676663 344432 67899999999998552222322111 14
Q ss_pred ccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 478 IAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 478 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
.++++|++|.+.+ ++++.++. ..+..+++||+|++.+|+.-..=|..+..+ .|++|.+..-..+
T Consensus 389 ~gl~~LrkL~l~g-Nqlk~I~k-----rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 389 NGLPSLRKLRLTG-NQLKSIPK-----RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred ccchhhhheeecC-ceeeecch-----hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 5799999999999 67888775 677889999999999998555556676655 8999887654443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=3e-22 Score=185.45 Aligned_cols=123 Identities=18% Similarity=0.317 Sum_probs=76.8
Q ss_pred ccEEEEeecCCcCCCCCcccccCc------cccCccccCCCCC-CCCCCCcCeeeeccccCceEecccccCCCCCCCCcc
Q 039861 404 LKKLQIYDYRGRRNVVPKNWIMDL------SLFRCRNCEHLPP-LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSS 476 (557)
Q Consensus 404 L~~L~l~~~~~~~~~~~~~~l~~L------~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 476 (557)
....+++.|...+ + |.-+..+ -+..+....-+|. +..+++|..|+++++. +..+|.++.+
T Consensus 390 Vt~VnfskNqL~e--l-Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~--------- 456 (565)
T KOG0472|consen 390 VTSVNFSKNQLCE--L-PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGS--------- 456 (565)
T ss_pred eEEEecccchHhh--h-hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhh---------
Confidence 4566667776665 4 3222221 1122222333333 5667777777776643 5555554332
Q ss_pred ccccccccccccccc----------------------ccccccccccccccccccCCccceeeeccCccccCCCCCcCCC
Q 039861 477 VIAFPKLKKLEFRNM----------------------EELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQK 534 (557)
Q Consensus 477 ~~~~~~L~~L~l~~~----------------------~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 534 (557)
+-.||.|+++.+ +.+..++ ++.+..|.+|.+|++.+| .+..+|..++++
T Consensus 457 ---lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-----~~~l~nm~nL~tLDL~nN-dlq~IPp~Lgnm 527 (565)
T KOG0472|consen 457 ---LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD-----PSGLKNMRNLTTLDLQNN-DLQQIPPILGNM 527 (565)
T ss_pred ---hhhhheecccccccccchHHHhhHHHHHHHHhccccccccC-----hHHhhhhhhcceeccCCC-chhhCChhhccc
Confidence 334555555542 2233222 345889999999999999 599999999999
Q ss_pred CCcceEEEecCCCc
Q 039861 535 STLQKLEIWGCPIL 548 (557)
Q Consensus 535 ~~L~~L~l~~c~~l 548 (557)
++|++|+++|||.-
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 99999999999964
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=9.4e-21 Score=175.59 Aligned_cols=246 Identities=26% Similarity=0.380 Sum_probs=155.8
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCccccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIG 304 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~ 304 (557)
+.++..|.+|++ ..+.+.++|++++.+..++.|+.++|+ +.++|+.++.+.+|..|+.+.|. +.++|++++
T Consensus 64 l~nL~~l~vl~~-------~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~ 134 (565)
T KOG0472|consen 64 LKNLACLTVLNV-------HDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSIG 134 (565)
T ss_pred hhcccceeEEEe-------ccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccc-eeecCchHH
Confidence 556666666666 666666666666666666666666666 66666666666666666666644 666666666
Q ss_pred CCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccC
Q 039861 305 KLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEK 384 (557)
Q Consensus 305 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 384 (557)
.+..|..++..+| .+..+|++++.+.+|..|.+.++......+..+. ++. |+.++....
T Consensus 135 ~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~---L~~ld~~~N---------------- 193 (565)
T KOG0472|consen 135 RLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKR---LKHLDCNSN---------------- 193 (565)
T ss_pred HHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHH---HHhcccchh----------------
Confidence 6666666666655 4556666666666666665554443321111111 112 222111110
Q ss_pred CCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEeccc
Q 039861 385 KKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNE 464 (557)
Q Consensus 385 l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~ 464 (557)
..+..++.++.+.+|+-|++..|.+. .+|.++++..|++|++.. +.++.++.+
T Consensus 194 -----~L~tlP~~lg~l~~L~~LyL~~Nki~---------------------~lPef~gcs~L~Elh~g~-N~i~~lpae 246 (565)
T KOG0472|consen 194 -----LLETLPPELGGLESLELLYLRRNKIR---------------------FLPEFPGCSLLKELHVGE-NQIEMLPAE 246 (565)
T ss_pred -----hhhcCChhhcchhhhHHHHhhhcccc---------------------cCCCCCccHHHHHHHhcc-cHHHhhHHH
Confidence 01123455566666666666665543 356778888888888865 335555554
Q ss_pred ccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEec
Q 039861 465 FLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWG 544 (557)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 544 (557)
.. ..+++|..|++.+ +++++. |+.+.-+.+|+.|++++| .+..+|..++++ .|+.|.+.|
T Consensus 247 ~~-----------~~L~~l~vLDLRd-Nklke~------Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 247 HL-----------KHLNSLLVLDLRD-NKLKEV------PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred Hh-----------cccccceeeeccc-cccccC------chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcC
Confidence 32 3678899999988 555554 668888899999999998 488899988888 999999999
Q ss_pred CCC
Q 039861 545 CPI 547 (557)
Q Consensus 545 c~~ 547 (557)
||.
T Consensus 307 NPl 309 (565)
T KOG0472|consen 307 NPL 309 (565)
T ss_pred Cch
Confidence 984
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=3.7e-18 Score=174.21 Aligned_cols=331 Identities=21% Similarity=0.221 Sum_probs=179.5
Q ss_pred eEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhh
Q 039861 177 IRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIE 256 (557)
Q Consensus 177 ~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~ 256 (557)
+.++.+.++....+|..+.. +..|+.|.++.|. +.. .|....++++|++|+| .+|.+..+|.++.
T Consensus 47 L~~l~lsnn~~~~fp~~it~----l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL-------~~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITL----LSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNL-------KNNRLQSLPASIS 111 (1081)
T ss_pred eEEeeccccccccCCchhhh----HHHHhhcccchhh---Hhh-Cchhhhhhhcchhhee-------ccchhhcCchhHH
Confidence 66666666666666666555 7777777777775 222 4566677777777777 7777777777777
Q ss_pred cccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccccc
Q 039861 257 KLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRV 336 (557)
Q Consensus 257 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 336 (557)
.+++|++|+++.|. ...+|..+..+..++.+..++|..+..++... .+++++..+.....++.++..++. +|
T Consensus 112 ~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred hhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--ee
Confidence 77777777777777 67777666666666666666653233332211 233333333222233333333333 23
Q ss_pred CceEecCccCCccCccccccC------------------------------------CcCCCceecCCCCCCChhHH-HH
Q 039861 337 TKLVVGGGYDRACSLGSLKKL------------------------------------NLLRECTIRGLGGVSDAGEA-RR 379 (557)
Q Consensus 337 ~~~~~~~~~~~~~~l~~L~~L------------------------------------~~L~~l~i~~~~~~~~~~~~-~~ 379 (557)
++.++.........+..++.+ .+|..++++......-+.+. ..
T Consensus 184 dLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~ 263 (1081)
T KOG0618|consen 184 DLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGAC 263 (1081)
T ss_pred ecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhc
Confidence 333332221000000000000 01112222211100000000 00
Q ss_pred hhcc--------------------CCCCCc----hHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccC---------
Q 039861 380 AELE--------------------KKKNLD----EDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMD--------- 426 (557)
Q Consensus 380 ~~l~--------------------~l~~l~----~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~--------- 426 (557)
.++. ++..+. ....+++.+++...|++|+|..|.+.. +|+..+..
T Consensus 264 ~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~--lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 264 ANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS--LPDNFLAVLNASLNTLN 341 (1081)
T ss_pred ccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc--cchHHHhhhhHHHHHHh
Confidence 0110 111110 122344556678899999999998776 55544322
Q ss_pred ----------------------ccccCccccCC-CCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccc
Q 039861 427 ----------------------LSLFRCRNCEH-LPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKL 483 (557)
Q Consensus 427 ----------------------L~l~~~~~~~~-l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 483 (557)
|.+.++...+. +|.+.++++|+.|+|+.+. +..+|... ...++.|
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~-----------~~kle~L 409 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASK-----------LRKLEEL 409 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHH-----------HhchHHh
Confidence 23444443332 5667888999999998754 65565543 3357778
Q ss_pred cccccccccccccccc-----------------ccccccccccCCccceeeeccCcccc--CCCCCcCCCCCcceEEEec
Q 039861 484 KKLEFRNMEELEEWDC-----------------GTAIKGEIIIMPRLSSLSIQSCPKLK--ALPDHLLQKSTLQKLEIWG 544 (557)
Q Consensus 484 ~~L~l~~~~~l~~~~~-----------------~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~ 544 (557)
+.|++++ +.|+.++. ...+| .+..++.|+.+|++.|. |+ .+|.... -++|++||++|
T Consensus 410 eeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p-~p~LkyLdlSG 485 (1081)
T KOG0618|consen 410 EELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALP-SPNLKYLDLSG 485 (1081)
T ss_pred HHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhhCC-CcccceeeccC
Confidence 8888887 45555542 11235 56778889999998884 55 3444322 27999999999
Q ss_pred CCCc
Q 039861 545 CPIL 548 (557)
Q Consensus 545 c~~l 548 (557)
|+.+
T Consensus 486 N~~l 489 (1081)
T KOG0618|consen 486 NTRL 489 (1081)
T ss_pred Cccc
Confidence 9864
No 13
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.67 E-value=1.1e-17 Score=161.45 Aligned_cols=100 Identities=46% Similarity=0.856 Sum_probs=83.7
Q ss_pred ChHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhhh---hcccchhHHHHhhccCChhhhHHHhhhcCCC
Q 039861 1 KIGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELEA---IKKGLLAPLLLSYNELPSKVKQCFTYCAVFP 77 (557)
Q Consensus 1 ~i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~---~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp 77 (557)
+++++|+++|+|+||||+++|++|+.+.+.++|+.++++..+.... ....+..++.+||+.||++.|.||+|||+||
T Consensus 183 ~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~ 262 (287)
T PF00931_consen 183 DLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFP 262 (287)
T ss_dssp THHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCC
Confidence 4689999999999999999999997665677899999876554432 2356899999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHHcCCcCcC
Q 039861 78 KDYDIQKEELIELWMAQGYLSEK 100 (557)
Q Consensus 78 ~~~~i~~~~li~~w~a~g~~~~~ 100 (557)
+++.|+++.|+++|+++||+...
T Consensus 263 ~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 263 EGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TTS-EEHHHHHHHHTT-HHTC--
T ss_pred CCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-18 Score=176.85 Aligned_cols=142 Identities=24% Similarity=0.362 Sum_probs=106.9
Q ss_pred CcccccccCceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcC
Q 039861 167 STMSSFEEKKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVN 246 (557)
Q Consensus 167 ~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~ 246 (557)
.|...+..+.+.++.+..+.....|-++. .+.-+|++|++++|.. ..+|..+..+.+|+.|++ +.|
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~---~~~v~L~~l~lsnn~~----~~fp~~it~l~~L~~ln~-------s~n 78 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFV---EKRVKLKSLDLSNNQI----SSFPIQITLLSHLRQLNL-------SRN 78 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHh---hheeeeEEeecccccc----ccCCchhhhHHHHhhccc-------chh
Confidence 33333343445555555554444343222 2344599999999873 236777888899999999 889
Q ss_pred cccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCccc
Q 039861 247 DIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLP 324 (557)
Q Consensus 247 ~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p 324 (557)
.+..+|.+++++.+|++|+|.+|. +..+|.++..+++|+.|++++|. +..+|.-+..++.+..+..++|..+..++
T Consensus 79 ~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 79 YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred hHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 999999999999999999998887 88999999999999999999976 88888888889999999999885554444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=4.5e-15 Score=156.25 Aligned_cols=256 Identities=20% Similarity=0.205 Sum_probs=164.5
Q ss_pred cceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhcc
Q 039861 203 GLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCEL 282 (557)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l 282 (557)
.-..|+++.+.+ .. +|..+. .+|+.|++ ..|.++.+|.. +++|++|++++|. ++.+|.. .
T Consensus 202 ~~~~LdLs~~~L---ts-LP~~l~--~~L~~L~L-------~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p 261 (788)
T PRK15387 202 GNAVLNVGESGL---TT-LPDCLP--AHITTLVI-------PDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---P 261 (788)
T ss_pred CCcEEEcCCCCC---Cc-CCcchh--cCCCEEEc-------cCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---c
Confidence 455677777763 22 455443 37888888 77778887752 4678888888887 7788753 4
Q ss_pred CcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCC
Q 039861 283 HNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRE 362 (557)
Q Consensus 283 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~ 362 (557)
++|+.|++++|. +..+|.. ..+|+.|++++| .++.+|.. +++|+.|++.+|..... +... ..|+.
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~L-p~lp------~~L~~ 326 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASL-PALP------SELCK 326 (788)
T ss_pred cccceeeccCCc-hhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECCCCccccC-CCCc------ccccc
Confidence 677888888866 6677653 356777888887 56667653 35677777766654431 1111 12333
Q ss_pred ceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCC-CCCCccEEEEeecCCcCCCCC--cccccCccccCccccCCCC
Q 039861 363 CTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALG-PPPNLKKLQIYDYRGRRNVVP--KNWIMDLSLFRCRNCEHLP 439 (557)
Q Consensus 363 l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~l~~~~~~~~l~ 439 (557)
|.+.+.. + ..+. .+.+|+.|++++|.+.. +| +..+..|.+.+|. +..+|
T Consensus 327 L~Ls~N~-L------------------------~~LP~lp~~Lq~LdLS~N~Ls~--LP~lp~~L~~L~Ls~N~-L~~LP 378 (788)
T PRK15387 327 LWAYNNQ-L------------------------TSLPTLPSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNR-LTSLP 378 (788)
T ss_pred cccccCc-c------------------------ccccccccccceEecCCCccCC--CCCCCcccceehhhccc-cccCc
Confidence 3333211 0 1111 13478999999888776 32 3456667776653 44566
Q ss_pred CCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeec
Q 039861 440 PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQ 519 (557)
Q Consensus 440 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 519 (557)
.+ .++|+.|+++++. ++.++. ..++|+.|+++++ .++.+ |.. ..+|+.|+++
T Consensus 379 ~l--~~~L~~LdLs~N~-Lt~LP~---------------l~s~L~~LdLS~N-~LssI------P~l---~~~L~~L~Ls 430 (788)
T PRK15387 379 AL--PSGLKELIVSGNR-LTSLPV---------------LPSELKELMVSGN-RLTSL------PML---PSGLLSLSVY 430 (788)
T ss_pred cc--ccccceEEecCCc-ccCCCC---------------cccCCCEEEccCC-cCCCC------Ccc---hhhhhhhhhc
Confidence 53 3578999998753 443332 2357899999985 45443 322 3578889999
Q ss_pred cCccccCCCCCcCCCCCcceEEEecCCCccc
Q 039861 520 SCPKLKALPDHLLQKSTLQKLEIWGCPILKE 550 (557)
Q Consensus 520 ~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 550 (557)
+| .++.+|..+.++++|+.|++++|+.-..
T Consensus 431 ~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 431 RN-QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cC-cccccChHHhhccCCCeEECCCCCCCch
Confidence 98 5889998888889999999999986543
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.6e-17 Score=133.91 Aligned_cols=156 Identities=28% Similarity=0.419 Sum_probs=131.0
Q ss_pred cccCceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc
Q 039861 172 FEEKKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI 251 (557)
Q Consensus 172 ~~~~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l 251 (557)
++.+.+.++.+..+....+|+.+.. +.+|++|.+++|. +.. +|..++.++.||.|++ +-|.+..+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~----l~nlevln~~nnq---ie~-lp~~issl~klr~lnv-------gmnrl~~l 94 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAE----LKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNV-------GMNRLNIL 94 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHH----hhhhhhhhcccch---hhh-cChhhhhchhhhheec-------chhhhhcC
Confidence 3446788888888888888887776 8999999999887 433 6777899999999999 78888889
Q ss_pred chhhhcccCCCeeecccCCccc--ccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccC
Q 039861 252 PTNIEKLLHLKYLNLKSQNKIE--KLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGE 329 (557)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~ 329 (557)
|.+||.++.|++|||..|+ +. .+|..|..++.|+-|.+++|. .+.+|+++++|++||.|.+.+| .+-.+|.+++.
T Consensus 95 prgfgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~ 171 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGD 171 (264)
T ss_pred ccccCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHH
Confidence 9999999999999998887 54 588888889999999999976 8889999999999999999988 56678999999
Q ss_pred cccccccCceEecCcc
Q 039861 330 LIRLRRVTKLVVGGGY 345 (557)
Q Consensus 330 L~~L~~L~~~~~~~~~ 345 (557)
++.|++|.+.++....
T Consensus 172 lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHhcccceeee
Confidence 9999999888776543
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-15 Score=142.08 Aligned_cols=287 Identities=20% Similarity=0.213 Sum_probs=172.1
Q ss_pred cceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcccCCCeeecccCCcccccc-hhhh
Q 039861 203 GLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKLLHLKYLNLKSQNKIEKLP-ETLC 280 (557)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp-~~~~ 280 (557)
.-..+.+..|. +..+.|.+|+.+++||.||| +.|.|+.| |++|..|..|..|-+.++++|+++| ..|+
T Consensus 68 ~tveirLdqN~---I~~iP~~aF~~l~~LRrLdL-------S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDL-------SKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCC---cccCChhhccchhhhceecc-------cccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 44566777776 55667778888888888888 88888876 6778888888888777755588888 5788
Q ss_pred ccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccc-cccCcccccccCceEecCccCCccCccccccCCc
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPV-GIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNL 359 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 359 (557)
+|..|+.|.+.-|.........+..|++|..|.+.+| .++.++. .+..+..++++.+..+.... .+.++.+..-..
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic--dCnL~wla~~~a 214 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC--DCNLPWLADDLA 214 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc--ccccchhhhHHh
Confidence 8888888888887733344455788888888888888 6667776 57777888887776554322 222221111000
Q ss_pred CCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCC
Q 039861 360 LRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLP 439 (557)
Q Consensus 360 L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~ 439 (557)
......++..-+.. .........+.. ...+.. .++.+ ++. ....|......|
T Consensus 215 ~~~ietsgarc~~p-~rl~~~Ri~q~~----a~kf~c------~~esl-------------~s~----~~~~d~~d~~cP 266 (498)
T KOG4237|consen 215 MNPIETSGARCVSP-YRLYYKRINQED----ARKFLC------SLESL-------------PSR----LSSEDFPDSICP 266 (498)
T ss_pred hchhhcccceecch-HHHHHHHhcccc----hhhhhh------hHHhH-------------HHh----hccccCcCCcCh
Confidence 00000001000000 000000000000 000000 01110 000 001111111223
Q ss_pred C--CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceee
Q 039861 440 P--LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLS 517 (557)
Q Consensus 440 ~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 517 (557)
. +..||+|++|+++++. ++.+.+..+ .+...++.|.|.. ++++.+.. ..+..+..|++|+
T Consensus 267 ~~cf~~L~~L~~lnlsnN~-i~~i~~~aF-----------e~~a~l~eL~L~~-N~l~~v~~-----~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNK-ITRIEDGAF-----------EGAAELQELYLTR-NKLEFVSS-----GMFQGLSGLKTLS 328 (498)
T ss_pred HHHHhhcccceEeccCCCc-cchhhhhhh-----------cchhhhhhhhcCc-chHHHHHH-----Hhhhccccceeee
Confidence 2 7789999999998744 655544332 2466888899988 56676654 5677888999999
Q ss_pred eccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 518 IQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 518 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
+++|+...--|..+..+.+|.+|.+-.||-.
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999644455666667889999999888855
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=2.4e-14 Score=151.68 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=46.2
Q ss_pred ceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCC
Q 039861 230 CLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKL 309 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L 309 (557)
.|+.|+| ++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++|. +..+|..+. .+|
T Consensus 200 ~L~~L~L-------s~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L 264 (754)
T PRK15370 200 QITTLIL-------DNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SAL 264 (754)
T ss_pred CCcEEEe-------cCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCC
Confidence 4555555 5555555554432 355555555554 555554332 245555555544 445554432 345
Q ss_pred cEeecCCCCCCCcccccccCcccccccCceEe
Q 039861 310 MYIDNDDTDSLRYLPVGIGELIRLRRVTKLVV 341 (557)
Q Consensus 310 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 341 (557)
+.|++++| .+..+|..+. .+|+.|++.++
T Consensus 265 ~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 265 QSLDLFHN-KISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CEEECcCC-ccCccccccC--CCCcEEECCCC
Confidence 55555544 4444554432 24444444433
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-16 Score=130.31 Aligned_cols=152 Identities=24% Similarity=0.317 Sum_probs=131.9
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+++...|.++.|.+ .. .|..+..+++|++|++ .+|.++++|.+++.|++|+.|++.-|. +..+|..|+
T Consensus 32 ~s~ITrLtLSHNKl---~~-vppnia~l~nlevln~-------~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKL---TV-VPPNIAELKNLEVLNL-------SNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCce---ee-cCCcHHHhhhhhhhhc-------ccchhhhcChhhhhchhhhheecchhh-hhcCccccC
Confidence 77888889999973 33 4555899999999999 999999999999999999999999888 999999999
Q ss_pred ccCcCcEeecCCccc-cccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCc
Q 039861 281 ELHNLERLNVDDCEN-LRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNL 359 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 359 (557)
.++-|++||+..|.. -..+|..+..|+.|+-|++++| ....+|..++++++||.|.+..+.... ...++..|+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~----lpkeig~lt~ 174 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS----LPKEIGDLTR 174 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh----CcHHHHHHHH
Confidence 999999999998663 3458989999999999999999 778999999999999999988876543 5567788888
Q ss_pred CCCceecCCC
Q 039861 360 LRECTIRGLG 369 (557)
Q Consensus 360 L~~l~i~~~~ 369 (557)
|+.++|.+..
T Consensus 175 lrelhiqgnr 184 (264)
T KOG0617|consen 175 LRELHIQGNR 184 (264)
T ss_pred HHHHhcccce
Confidence 8888887753
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.4e-13 Score=143.31 Aligned_cols=257 Identities=20% Similarity=0.211 Sum_probs=167.4
Q ss_pred EEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhc
Q 039861 178 RHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEK 257 (557)
Q Consensus 178 r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~ 257 (557)
..|.+..+....+|..+. ++|+.|.+..|.+. . +|. ..++|++|++ ++|.++.+|..
T Consensus 204 ~~LdLs~~~LtsLP~~l~------~~L~~L~L~~N~Lt---~-LP~---lp~~Lk~LdL-------s~N~LtsLP~l--- 260 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP------AHITTLVIPDNNLT---S-LPA---LPPELRTLEV-------SGNQLTSLPVL--- 260 (788)
T ss_pred cEEEcCCCCCCcCCcchh------cCCCEEEccCCcCC---C-CCC---CCCCCcEEEe-------cCCccCcccCc---
Confidence 445666666666666542 47889999998743 2 443 3578999999 88899988853
Q ss_pred ccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccC
Q 039861 258 LLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVT 337 (557)
Q Consensus 258 l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 337 (557)
..+|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. +++|++|++++| .+..+|... .+|+.|.
T Consensus 261 p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~ 328 (788)
T PRK15387 261 PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLW 328 (788)
T ss_pred ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCc---ccccccc
Confidence 4688999999998 8888863 3578899999976 7888863 578999999998 667777543 3466666
Q ss_pred ceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCC
Q 039861 338 KLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRN 417 (557)
Q Consensus 338 ~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 417 (557)
+.++.... ++.+. ..|+.|++++.. +... + . .+++|+.|++++|.+..
T Consensus 329 Ls~N~L~~-----LP~lp--~~Lq~LdLS~N~-Ls~L--------------------P-~--lp~~L~~L~Ls~N~L~~- 376 (788)
T PRK15387 329 AYNNQLTS-----LPTLP--SGLQELSVSDNQ-LASL--------------------P-T--LPSELYKLWAYNNRLTS- 376 (788)
T ss_pred cccCcccc-----ccccc--cccceEecCCCc-cCCC--------------------C-C--CCcccceehhhcccccc-
Confidence 66554432 11111 245566665432 1110 0 0 13456666666666554
Q ss_pred CCCc--ccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccccccc
Q 039861 418 VVPK--NWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELE 495 (557)
Q Consensus 418 ~~~~--~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 495 (557)
+|. ..+..|++++|. +..+|.. .++|+.|+++++. ++.+|. .+.+|+.|+++++ .++
T Consensus 377 -LP~l~~~L~~LdLs~N~-Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~N-qLt 435 (788)
T PRK15387 377 -LPALPSGLKELIVSGNR-LTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRN-QLT 435 (788)
T ss_pred -CcccccccceEEecCCc-ccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhccC-ccc
Confidence 321 234555666653 3345543 3689999999864 444432 1347888999884 444
Q ss_pred ccccccccccccccCCccceeeeccCccccCCC
Q 039861 496 EWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALP 528 (557)
Q Consensus 496 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 528 (557)
. +|..+..+++|+.|++++|+.-...|
T Consensus 436 ~------LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 436 R------LPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred c------cChHHhhccCCCeEECCCCCCCchHH
Confidence 3 46678889999999999997543433
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.42 E-value=1.3e-13 Score=148.46 Aligned_cols=153 Identities=26% Similarity=0.364 Sum_probs=119.5
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCc--ccccchh-hhcccCCCeeecccCCcccccch
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVND--IKEIPTN-IEKLLHLKYLNLKSQNKIEKLPE 277 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~--l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~ 277 (557)
....|...+.++.... ++... ..+.|+.|-+ ..+. +..++.. |..++.|++|||++|..+.++|+
T Consensus 522 ~~~~rr~s~~~~~~~~----~~~~~-~~~~L~tLll-------~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH----IAGSS-ENPKLRTLLL-------QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred hhheeEEEEeccchhh----ccCCC-CCCccceEEE-------eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 5567777777776322 22212 3447888888 5553 6666644 77899999999999998999999
Q ss_pred hhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccC
Q 039861 278 TLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKL 357 (557)
Q Consensus 278 ~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L 357 (557)
+|++|.+||+|+++++. +..+|.++++|++|.+|++..+..+..+|.....|.+|++|.+.... .......+.++.+|
T Consensus 590 ~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENL 667 (889)
T ss_pred HHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcc
Confidence 99999999999999955 99999999999999999999997777777667779999999988765 22235567778888
Q ss_pred CcCCCceecC
Q 039861 358 NLLRECTIRG 367 (557)
Q Consensus 358 ~~L~~l~i~~ 367 (557)
++|+.+.+..
T Consensus 668 e~L~~ls~~~ 677 (889)
T KOG4658|consen 668 EHLENLSITI 677 (889)
T ss_pred cchhhheeec
Confidence 8888777753
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=7.9e-13 Score=140.31 Aligned_cols=140 Identities=21% Similarity=0.367 Sum_probs=106.5
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
.....+.+.......+|..+ .+.|+.|++.+|.+. . +|..+. .+|++|++ ++|.++.+|..
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I------p~~L~~L~Ls~N~Lt---s-LP~~l~--~nL~~L~L-------s~N~LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI------PEQITTLILDNNELK---S-LPENLQ--GNIKTLYA-------NSNQLTSIPAT 238 (754)
T ss_pred cCceEEEeCCCCcCcCCccc------ccCCcEEEecCCCCC---c-CChhhc--cCCCEEEC-------CCCccccCChh
Confidence 34566777777777777654 347899999999743 3 455443 58999999 88889999976
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
+. .+|+.|++++|. +..+|..+. .+|++|++++|. +..+|..+. .+|++|++++| .++.+|..+. .+|+
T Consensus 239 l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~ 307 (754)
T PRK15370 239 LP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGIT 307 (754)
T ss_pred hh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHH
Confidence 64 479999999998 889998765 589999999876 788988664 58999999998 6777876553 4677
Q ss_pred ccCceEecCc
Q 039861 335 RVTKLVVGGG 344 (557)
Q Consensus 335 ~L~~~~~~~~ 344 (557)
.|++..+...
T Consensus 308 ~L~Ls~N~Lt 317 (754)
T PRK15370 308 HLNVQSNSLT 317 (754)
T ss_pred HHHhcCCccc
Confidence 7766655443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=7.3e-14 Score=130.07 Aligned_cols=130 Identities=21% Similarity=0.291 Sum_probs=110.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-h
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-T 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~ 253 (557)
.....+.+..+.+..+|+..|+ .+++||.|+++.|. +..+-|++|.+++.|-.|-+- ++|.|+++| .
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~---~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvly------g~NkI~~l~k~ 134 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFK---TLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLY------GNNKITDLPKG 134 (498)
T ss_pred CcceEEEeccCCcccCChhhcc---chhhhceecccccc---hhhcChHhhhhhHhhhHHHhh------cCCchhhhhhh
Confidence 5677888999999999887655 49999999999999 555669999999988877661 558999999 5
Q ss_pred hhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCC
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTD 318 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 318 (557)
.|+.|..|+-|.+.-|+ +.-++ +.+..+++|..|.+.+|. ++.+++ .+..+.+++++.+..|.
T Consensus 135 ~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 69999999999998888 77665 789999999999999966 888887 68899999999988764
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=8.4e-13 Score=129.72 Aligned_cols=281 Identities=17% Similarity=0.139 Sum_probs=139.4
Q ss_pred CCcceEEEeccCCccch-hhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhh
Q 039861 201 LRGLRSFLVKSDEYSWS-SEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETL 279 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~ 279 (557)
+..|+.+.+.++.+... ...++..+...+.|+.|++.++........+..++..+..+.+|++|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 56677777777764221 11245556666777777773322100011122344556667777777777777322445555
Q ss_pred hccCc---CcEeecCCccccc----cCcccccCC-CCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCc
Q 039861 280 CELHN---LERLNVDDCENLR----ELPRGIGKL-RKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSL 351 (557)
Q Consensus 280 ~~l~~---L~~L~l~~~~~l~----~lp~~i~~L-~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l 351 (557)
..+.+ |++|++++|.... .+...+..+ ++|+.|++++|......+.. ..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-----------------------~~ 158 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA-----------------------LA 158 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH-----------------------HH
Confidence 55555 7777777766221 222344555 77777777777322110000 11
Q ss_pred cccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccC
Q 039861 352 GSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFR 431 (557)
Q Consensus 352 ~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~ 431 (557)
..+..++.|+.+++.+.. +... ........+...++|++|++++|.+.. .
T Consensus 159 ~~~~~~~~L~~L~l~~n~-l~~~---------------~~~~l~~~l~~~~~L~~L~L~~n~i~~--~------------ 208 (319)
T cd00116 159 KALRANRDLKELNLANNG-IGDA---------------GIRALAEGLKANCNLEVLDLNNNGLTD--E------------ 208 (319)
T ss_pred HHHHhCCCcCEEECcCCC-CchH---------------HHHHHHHHHHhCCCCCEEeccCCccCh--H------------
Confidence 122233334444443321 1100 001122233344678888887776432 0
Q ss_pred ccccCCCC-CCCCCCCcCeeeeccccCceEec-ccccCCCCCCCCccccccccccccccccccccccccccccccccccc
Q 039861 432 CRNCEHLP-PLGKLPSLEYLEIEGMQSVKRVG-NEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIII 509 (557)
Q Consensus 432 ~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 509 (557)
....++ .+..+++|++|++++|. +.... ..+.... ....++|+.|++.+|. ++... ...+...+..
T Consensus 209 --~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~-------~~~~~~L~~L~l~~n~-i~~~~-~~~l~~~~~~ 276 (319)
T cd00116 209 --GASALAETLASLKSLEVLNLGDNN-LTDAGAAALASAL-------LSPNISLLTLSLSCND-ITDDG-AKDLAEVLAE 276 (319)
T ss_pred --HHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHH-------hccCCCceEEEccCCC-CCcHH-HHHHHHHHhc
Confidence 001111 24566788888888764 22110 0000000 0123688888888864 32111 1122334455
Q ss_pred CCccceeeeccCccccC----CCCCcCCC-CCcceEEEecCC
Q 039861 510 MPRLSSLSIQSCPKLKA----LPDHLLQK-STLQKLEIWGCP 546 (557)
Q Consensus 510 l~~L~~L~l~~c~~l~~----lp~~~~~l-~~L~~L~l~~c~ 546 (557)
+++|+.+++++|..-.. +...+... +.|+++++.++|
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 68899999998853221 22222223 588888888876
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=3.3e-12 Score=125.54 Aligned_cols=256 Identities=20% Similarity=0.215 Sum_probs=145.8
Q ss_pred hHHHHhcCCceeEEEeccccCCCCcCcc-----cccchhhhcccCCCeeecccCCccc-------ccchhhhccCcCcEe
Q 039861 221 LPQLFDKLTCLRALNLKVRKPWSSVNDI-----KEIPTNIEKLLHLKYLNLKSQNKIE-------KLPETLCELHNLERL 288 (557)
Q Consensus 221 ~p~~~~~l~~L~~L~L~~~~~~~~~~~l-----~~lp~~~~~l~~L~~L~L~~~~~l~-------~lp~~~~~l~~L~~L 288 (557)
.+..+..+..|++|++ +++.+ ..++..+...+.|++|+++++. +. .++..+..+++|+.|
T Consensus 15 ~~~~~~~l~~L~~l~l-------~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 15 ATELLPKLLCLQVLRL-------EGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred hHHHHHHHhhccEEee-------cCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEE
Confidence 3455667777899999 55554 3466667777788888888776 44 234556677788888
Q ss_pred ecCCccccccCcccccCCCC---CcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccC-CcCCCce
Q 039861 289 NVDDCENLRELPRGIGKLRK---LMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKL-NLLRECT 364 (557)
Q Consensus 289 ~l~~~~~l~~lp~~i~~L~~---L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L-~~L~~l~ 364 (557)
++++|......+..+..+.+ |++|++++|.. ...+ . ......+..+ ++|+.+.
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~-~~~~--~--------------------~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL-GDRG--L--------------------RLLAKGLKDLPPALEKLV 143 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCcc-chHH--H--------------------HHHHHHHHhCCCCceEEE
Confidence 88887744445555544444 88888877732 2100 0 0011122233 4455555
Q ss_pred ecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCC-CCCC
Q 039861 365 IRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLP-PLGK 443 (557)
Q Consensus 365 i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~-~l~~ 443 (557)
+.++.-.... .......+...++|++|++++|......+ ..++ .+..
T Consensus 144 L~~n~l~~~~----------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----------------~~l~~~l~~ 191 (319)
T cd00116 144 LGRNRLEGAS----------------CEALAKALRANRDLKELNLANNGIGDAGI----------------RALAEGLKA 191 (319)
T ss_pred cCCCcCCchH----------------HHHHHHHHHhCCCcCEEECcCCCCchHHH----------------HHHHHHHHh
Confidence 5544321110 01122344556789999998876542000 1111 1345
Q ss_pred CCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccc-cccCCccceeeeccCc
Q 039861 444 LPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGE-IIIMPRLSSLSIQSCP 522 (557)
Q Consensus 444 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~l~~L~~L~l~~c~ 522 (557)
+++|++|++++|. +......... ..+..+++|+.|++++|+ +..... ..+... ....+.|+.|++.+|.
T Consensus 192 ~~~L~~L~L~~n~-i~~~~~~~l~-------~~~~~~~~L~~L~ls~n~-l~~~~~-~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 192 NCNLEVLDLNNNG-LTDEGASALA-------ETLASLKSLEVLNLGDNN-LTDAGA-AALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CCCCCEEeccCCc-cChHHHHHHH-------HHhcccCCCCEEecCCCc-CchHHH-HHHHHHHhccCCCceEEEccCCC
Confidence 5799999999875 3211111110 113457899999999964 333211 000001 1124899999999995
Q ss_pred ccc-----CCCCCcCCCCCcceEEEecCCCccc
Q 039861 523 KLK-----ALPDHLLQKSTLQKLEIWGCPILKE 550 (557)
Q Consensus 523 ~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~ 550 (557)
++ .++..+..+++|+++++++|.--.+
T Consensus 262 -i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 -ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred -CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 43 2333344468999999999976544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=3.2e-11 Score=117.84 Aligned_cols=175 Identities=27% Similarity=0.301 Sum_probs=120.5
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+.--...+++.|.+ .. +|..+..+..|..+.| ..|.+..+|..++++..|.||+|+.|+ +..+|..++
T Consensus 74 ltdt~~aDlsrNR~---~e-lp~~~~~f~~Le~liL-------y~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC 141 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF---SE-LPEEACAFVSLESLIL-------YHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLC 141 (722)
T ss_pred ccchhhhhcccccc---cc-CchHHHHHHHHHHHHH-------HhccceecchhhhhhhHHHHhhhccch-hhcCChhhh
Confidence 44444556666653 22 5666777777777777 777788888888888888888888887 778887776
Q ss_pred ccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcC
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLL 360 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 360 (557)
.|+ |+.|-+++|+ ++.+|+.++.+..|.+|+.+.| .+..+|..++.+.+|+.|.+..+.... ..+++..|+ |
T Consensus 142 ~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~----lp~El~~Lp-L 213 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLED----LPEELCSLP-L 213 (722)
T ss_pred cCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhh----CCHHHhCCc-e
Confidence 654 7888887755 7888888887788888888877 667777778888888888777665543 445555554 4
Q ss_pred CCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcC
Q 039861 361 RECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRR 416 (557)
Q Consensus 361 ~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 416 (557)
..|+++...- . .++-.+..+..|++|.|.+|+...
T Consensus 214 i~lDfScNki-s--------------------~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 214 IRLDFSCNKI-S--------------------YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeecccCce-e--------------------ecchhhhhhhhheeeeeccCCCCC
Confidence 4555543321 1 133455667788888888877654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=4.4e-09 Score=106.41 Aligned_cols=176 Identities=30% Similarity=0.367 Sum_probs=122.5
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhhccc-CCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLL-HLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGI 303 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i 303 (557)
+..++.+..|++ .++.+.++|...+.+. +|+.|++++|. +..+|..++.+++|+.|++++|. +..+|...
T Consensus 112 ~~~~~~l~~L~l-------~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDL-------DNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLL 182 (394)
T ss_pred hhcccceeEEec-------CCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhh
Confidence 555678888888 8888888888777775 88899998888 88887778888999999998877 88888777
Q ss_pred cCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhcc
Q 039861 304 GKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELE 383 (557)
Q Consensus 304 ~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~ 383 (557)
+.+++|+.|++++| .+..+|..++.+..|++|.+..+.... ....+.++..+..+.+......
T Consensus 183 ~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~~~~~~~l~~l~l~~n~~~------------ 245 (394)
T COG4886 183 SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIE----LLSSLSNLKNLSGLELSNNKLE------------ 245 (394)
T ss_pred hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCccee----cchhhhhcccccccccCCceee------------
Confidence 78888888888888 777888777777778888877763211 2333334444444333322111
Q ss_pred CCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeecccc
Q 039861 384 KKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQ 456 (557)
Q Consensus 384 ~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 456 (557)
..+..++.+++++.|++++|.+.. ++.++.+.+|+.|++++..
T Consensus 246 ---------~~~~~~~~l~~l~~L~~s~n~i~~---------------------i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 246 ---------DLPESIGNLSNLETLDLSNNQISS---------------------ISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ---------eccchhccccccceeccccccccc---------------------cccccccCccCEEeccCcc
Confidence 013445566778888877776544 2335666777777776643
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=4.4e-09 Score=91.08 Aligned_cols=126 Identities=24% Similarity=0.285 Sum_probs=47.0
Q ss_pred CCcceEEEeccCCccchhhhhHHHHh-cCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFD-KLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETL 279 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~ 279 (557)
...+|.|++.++.+..+.. ++ .+.+|+.|+| ++|.++.++ .+..+.+|++|++++|. ++.+++.+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~L-------s~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN-----LGATLDKLEVLDL-------SNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp ------------------S-------TT-TT--EEE--------TTS--S--T-T----TT--EEE--SS----S-CHHH
T ss_pred ccccccccccccccccccc-----hhhhhcCCCEEEC-------CCCCCcccc-CccChhhhhhcccCCCC-CCccccch
Confidence 5567888888887433322 43 4678888888 888888875 47778888888888888 88886555
Q ss_pred -hccCcCcEeecCCccccccCc--ccccCCCCCcEeecCCCCCCCcccc----cccCcccccccCceEec
Q 039861 280 -CELHNLERLNVDDCENLRELP--RGIGKLRKLMYIDNDDTDSLRYLPV----GIGELIRLRRVTKLVVG 342 (557)
Q Consensus 280 -~~l~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~ 342 (557)
..+++|++|++++|. +..+. ..+..+++|++|++.+|. +...+. .+..+++|+.|+...+.
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 368888888888876 55543 235678888888888873 332221 24566777777665544
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=9.4e-10 Score=95.26 Aligned_cols=109 Identities=25% Similarity=0.306 Sum_probs=41.2
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhh-cccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIE-KLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGI 303 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i 303 (557)
+.+...+|.|+| +++.|..+. .++ .+.+|+.|++++|. ++.++. +..+++|++|++++|. +..+++.+
T Consensus 15 ~~n~~~~~~L~L-------~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNL-------RGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHH
T ss_pred cccccccccccc-------ccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccch
Confidence 455668899999 888888874 466 58899999999999 999965 8899999999999987 88887666
Q ss_pred -cCCCCCcEeecCCCCCCCccc--ccccCcccccccCceEecCcc
Q 039861 304 -GKLRKLMYIDNDDTDSLRYLP--VGIGELIRLRRVTKLVVGGGY 345 (557)
Q Consensus 304 -~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~ 345 (557)
..+++|++|++++| .+..+. ..++.+++|+.|++.++..+.
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 46999999999998 554443 235567777777777776654
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.2e-09 Score=99.05 Aligned_cols=158 Identities=22% Similarity=0.218 Sum_probs=107.5
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
+++|.+++.+......+.. ...+.|+++|.|+++.|-+..+.. +-.....+++|+.|+| +.|.+....++
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNl-------s~Nrl~~~~~s 190 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNL-------SSNRLSNFISS 190 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhccc-------ccccccCCccc
Confidence 6678888877766543331 223449999999999987543333 3445678999999999 66655433222
Q ss_pred --hhcccCCCeeecccCCccc--ccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCccc--cccc
Q 039861 255 --IEKLLHLKYLNLKSQNKIE--KLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLP--VGIG 328 (557)
Q Consensus 255 --~~~l~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~ 328 (557)
-..+.+|+.|.|++|. +. ++-.....+++|+.|++..|..+..-.....-++.|+.|++++|+ +...+ ..++
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccc
Confidence 2367899999999998 65 233445578999999999985333333334567889999999984 44455 3467
Q ss_pred CcccccccCceEecCc
Q 039861 329 ELIRLRRVTKLVVGGG 344 (557)
Q Consensus 329 ~L~~L~~L~~~~~~~~ 344 (557)
.++.|+.|.+..++..
T Consensus 269 ~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccchhhhhccccCcc
Confidence 7777777776665544
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=6.4e-10 Score=108.93 Aligned_cols=129 Identities=28% Similarity=0.374 Sum_probs=82.1
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+..|..++++.|.. .. +|..+..+ -|++|-+ ++|.++.+|..++.+.+|..|+.+.|. +..+|..++
T Consensus 120 L~~lt~l~ls~Nql---S~-lp~~lC~l-pLkvli~-------sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~ 186 (722)
T KOG0532|consen 120 LEALTFLDLSSNQL---SH-LPDGLCDL-PLKVLIV-------SNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLG 186 (722)
T ss_pred hhHHHHhhhccchh---hc-CChhhhcC-cceeEEE-------ecCccccCCcccccchhHHHhhhhhhh-hhhchHHhh
Confidence 55555555555552 11 34434332 3566666 666666666666666666666666666 666666666
Q ss_pred ccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCcc
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGY 345 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 345 (557)
.+.+|+.|.++.|. +..+|+.+..| .|..||++.| ++..+|..|.+|+.||+|.+-+|....
T Consensus 187 ~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCCC
Confidence 67777777766655 66666666633 4677777766 677788888888888888777766544
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1.1e-07 Score=100.86 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=83.1
Q ss_pred ceeEEEeccccCCCCcCccc-ccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCC
Q 039861 230 CLRALNLKVRKPWSSVNDIK-EIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRK 308 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~ 308 (557)
.++.|+| +++.+. .+|..++.+.+|++|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++
T Consensus 419 ~v~~L~L-------~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGL-------DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEEC-------CCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 4778888 777765 68888999999999999999844588988999999999999998866788988999999
Q ss_pred CcEeecCCCCCCCcccccccCc-ccccccCceE
Q 039861 309 LMYIDNDDTDSLRYLPVGIGEL-IRLRRVTKLV 340 (557)
Q Consensus 309 L~~L~l~~~~~l~~~p~~i~~L-~~L~~L~~~~ 340 (557)
|++|++++|.....+|..++.+ .++..+.+..
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 9999999997777888877653 3444444433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=4.5e-08 Score=99.11 Aligned_cols=171 Identities=26% Similarity=0.384 Sum_probs=120.8
Q ss_pred CceEEEEEEecCCCCcccccccccCCCC-cceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLR-GLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~ 253 (557)
..+..+.+..+.+.+++..... .. +|+.|++..|.+ .. +|..+..+++|+.|++ +.|.+.++|.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~----~~~nL~~L~l~~N~i---~~-l~~~~~~l~~L~~L~l-------~~N~l~~l~~ 180 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGL----LKSNLKELDLSDNKI---ES-LPSPLRNLPNLKNLDL-------SFNDLSDLPK 180 (394)
T ss_pred cceeEEecCCcccccCcccccc----chhhcccccccccch---hh-hhhhhhcccccccccc-------CCchhhhhhh
Confidence 3566677777777666655543 53 788888888863 22 4445777888888888 7888888887
Q ss_pred hhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL 333 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 333 (557)
..+.+..|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.++.++..+.+.++ .+..++..++.+.++
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l 257 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNL 257 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeeccchhcccccc
Confidence 77778888888888887 88888766677778888888765 5556666778888888887766 455556777888888
Q ss_pred cccCceEecCccCCccCccccccCCcCCCceecCC
Q 039861 334 RRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGL 368 (557)
Q Consensus 334 ~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 368 (557)
+.|++..+.... +..+..+..++.+++.+.
T Consensus 258 ~~L~~s~n~i~~-----i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 258 ETLDLSNNQISS-----ISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ceeccccccccc-----cccccccCccCEEeccCc
Confidence 888887776654 222555566666666554
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.1e-09 Score=98.67 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=48.5
Q ss_pred ccCccccCcccc--CCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccccccccccccc
Q 039861 424 IMDLSLFRCRNC--EHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGT 501 (557)
Q Consensus 424 l~~L~l~~~~~~--~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 501 (557)
++.|+|+++..+ ..++..+.||.|+.|+++.+. +..+..--.+ ...-...||+|++|.+.. +.+.+|..
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~-----s~~kt~~f~kL~~L~i~~-N~I~~w~s-- 318 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVE-----SLDKTHTFPKLEYLNISE-NNIRDWRS-- 318 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCcc-----chhhhcccccceeeeccc-Cccccccc--
Confidence 334455554432 234557788888888887643 2222110000 001124688888888887 45555554
Q ss_pred ccccccccCCccceeeeccCc
Q 039861 502 AIKGEIIIMPRLSSLSIQSCP 522 (557)
Q Consensus 502 ~~~~~~~~l~~L~~L~l~~c~ 522 (557)
-..+..+++|+.|.+..+.
T Consensus 319 --l~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 319 --LNHLRTLENLKHLRITLNY 337 (505)
T ss_pred --cchhhccchhhhhhccccc
Confidence 3345567777777776664
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.4e-08 Score=91.91 Aligned_cols=128 Identities=21% Similarity=0.188 Sum_probs=86.1
Q ss_pred cCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCC
Q 039861 227 KLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKL 306 (557)
Q Consensus 227 ~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L 306 (557)
..+.|..+|| ++|.|+.+-.++.-++.++.|+++.|. +..+-. +..|++|+.||+++|. +.++-.+-.+|
T Consensus 282 TWq~LtelDL-------S~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDL-------SGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKL 351 (490)
T ss_pred hHhhhhhccc-------cccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhh
Confidence 3456777888 778888877777777888888888887 666644 7778888888888866 66664444567
Q ss_pred CCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCC
Q 039861 307 RKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGL 368 (557)
Q Consensus 307 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 368 (557)
-|.++|.+++| .+..+ .++++|-+|..|++..+.+.. ...+..+++|+.|..+.+.+.
T Consensus 352 GNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie~--ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 352 GNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQIEE--LDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred cCEeeeehhhh-hHhhh-hhhHhhhhheeccccccchhh--HHHhcccccccHHHHHhhcCC
Confidence 77777888777 44444 356667777777777666544 334445555555555555443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.4e-08 Score=91.90 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=96.0
Q ss_pred CCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhh
Q 039861 200 GLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETL 279 (557)
Q Consensus 200 ~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~ 279 (557)
..+.|..+++++|.+.. +..+..-.+.+|+|++ +.|.+..+.. +..|.+|+.|||++|. +.++-..-
T Consensus 282 TWq~LtelDLS~N~I~~----iDESvKL~Pkir~L~l-------S~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ----IDESVKLAPKLRRLIL-------SQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWH 348 (490)
T ss_pred hHhhhhhccccccchhh----hhhhhhhccceeEEec-------cccceeeehh-hhhcccceEeecccch-hHhhhhhH
Confidence 36678888888887432 3445666778888888 8888877754 7788888888888887 77776666
Q ss_pred hccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCccc--ccccCcccccccCceEecCc
Q 039861 280 CELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLP--VGIGELIRLRRVTKLVVGGG 344 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~ 344 (557)
.+|.+.++|.+++|. ++.+ .++++|-+|.+||+++| .+..+. .+||+|+-|+++.+.++...
T Consensus 349 ~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 678888888888865 6666 46788888888888888 445443 46888888888888776544
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=2.3e-07 Score=98.59 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=74.2
Q ss_pred CCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCce
Q 039861 260 HLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKL 339 (557)
Q Consensus 260 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 339 (557)
.++.|+|++|..-..+|..++++++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++++++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999888445788889999999999999988666889889999999999999997667888889999999999988
Q ss_pred EecCccCCc
Q 039861 340 VVGGGYDRA 348 (557)
Q Consensus 340 ~~~~~~~~~ 348 (557)
.+......+
T Consensus 499 ~N~l~g~iP 507 (623)
T PLN03150 499 GNSLSGRVP 507 (623)
T ss_pred CCcccccCC
Confidence 877654333
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=2.3e-07 Score=65.76 Aligned_cols=56 Identities=32% Similarity=0.589 Sum_probs=29.4
Q ss_pred ceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCc
Q 039861 230 CLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDC 293 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~ 293 (557)
+|++|++ ++|.+..+| ..+..+++|++|++++|. +..+| ..|..+++|++|++++|
T Consensus 2 ~L~~L~l-------~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDL-------SNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEE-------TSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEEC-------CCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555 555555555 244555555555555555 55544 34455555555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5.3e-07 Score=63.92 Aligned_cols=58 Identities=26% Similarity=0.578 Sum_probs=50.6
Q ss_pred cCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCC
Q 039861 259 LHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTD 318 (557)
Q Consensus 259 ~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 318 (557)
++|++|++++|. +..+| ..|..+++|++|++++|. +..+|+ .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999997 99998 578899999999999877 777765 67999999999999983
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=2.2e-07 Score=88.23 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=74.7
Q ss_pred CCCCCccEEEEeecCCcCCCCC------cccccCccccCccccCCCC--C-CCCCCCcCeeeeccccCceEecccccCCC
Q 039861 399 GPPPNLKKLQIYDYRGRRNVVP------KNWIMDLSLFRCRNCEHLP--P-LGKLPSLEYLEIEGMQSVKRVGNEFLGVE 469 (557)
Q Consensus 399 ~~~~~L~~L~l~~~~~~~~~~~------~~~l~~L~l~~~~~~~~l~--~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 469 (557)
.....|+.|..+++.......- ...++-|.+..|....+.- . -.+.+.|+.+++.+|...... .+..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~s-- 366 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLAS-- 366 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhh--
Confidence 3456778887777654331000 0012224455554433321 1 134556666666554422211 0111
Q ss_pred CCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccC-CCCCcCCCCCcceEEEecCCCc
Q 039861 470 SDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKA-LPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 470 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l 548 (557)
-..+.|.|+.|.++.|..+++-. ...+...-..+..|+.+.+.+||.+.. .-+.+..+++|+.+++.+|...
T Consensus 367 ------ls~~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 367 ------LSRNCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ------hccCCchhccCChhhhhhhhhhh-hhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 12357888888888776654421 011223345677888888888886552 1223345778888888888766
Q ss_pred cc
Q 039861 549 KE 550 (557)
Q Consensus 549 ~~ 550 (557)
.+
T Consensus 440 tk 441 (483)
T KOG4341|consen 440 TK 441 (483)
T ss_pred hh
Confidence 44
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.7e-06 Score=54.48 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=14.4
Q ss_pred CCCeeecccCCcccccchhhhccCcCcEeecCCc
Q 039861 260 HLKYLNLKSQNKIEKLPETLCELHNLERLNVDDC 293 (557)
Q Consensus 260 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 293 (557)
+|++|++++|. ++++|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCC
Confidence 34444444444 4444444444444444444444
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1e-07 Score=86.45 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=44.1
Q ss_pred ceeEEEeccccCCCCcCccc--ccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCccc--ccC
Q 039861 230 CLRALNLKVRKPWSSVNDIK--EIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRG--IGK 305 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~--i~~ 305 (557)
.|++||| +...|+ .+..-+..+.+|+.|++.++..-..+-..+.+-.+|+.|+++.|..+++..-. +.+
T Consensus 186 Rlq~lDL-------S~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDL-------SNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhHHhhc-------chhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 4666666 554444 23334555666666666666522234445556666666666666655543221 345
Q ss_pred CCCCcEeecCCC
Q 039861 306 LRKLMYIDNDDT 317 (557)
Q Consensus 306 L~~L~~L~l~~~ 317 (557)
++.|+.|+++.|
T Consensus 259 cs~L~~LNlsWc 270 (419)
T KOG2120|consen 259 CSRLDELNLSWC 270 (419)
T ss_pred hhhHhhcCchHh
Confidence 555666666555
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=2.6e-07 Score=85.79 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=25.9
Q ss_pred hccCcCcEeecCCccccccCccc----ccCCCCCcEeecCCC
Q 039861 280 CELHNLERLNVDDCENLRELPRG----IGKLRKLMYIDNDDT 317 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~ 317 (557)
-..++|++||||+|-.-..-+.. +.+...|++|.|.+|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 34567777777776643333332 466888999999988
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=1.1e-06 Score=89.29 Aligned_cols=128 Identities=24% Similarity=0.339 Sum_probs=95.9
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+..+..+.+..|.+ .. .-..+..++.|.+|++ ..|.++.+...+..+.+|++|++++|. |+++.. +.
T Consensus 71 l~~l~~l~l~~n~i---~~-~~~~l~~~~~l~~l~l-------~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~ 137 (414)
T KOG0531|consen 71 LTSLKELNLRQNLI---AK-ILNHLSKLKSLEALDL-------YDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LS 137 (414)
T ss_pred hHhHHhhccchhhh---hh-hhcccccccceeeeec-------cccchhhcccchhhhhcchheeccccc-cccccc-hh
Confidence 56666666666653 22 1223677899999999 888888887668889999999999998 888865 88
Q ss_pred ccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCccccc-ccCcccccccCceEecCc
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVG-IGELIRLRRVTKLVVGGG 344 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 344 (557)
.++.|+.|++.+|. +..++ ++..+++|+.+++++| .+..++.. ...+.+++.+.+..+...
T Consensus 138 ~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 138 TLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hccchhhheeccCc-chhcc-CCccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCchh
Confidence 89999999999977 77774 4677999999999998 44555432 466777777776655543
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.2e-06 Score=53.79 Aligned_cols=41 Identities=32% Similarity=0.536 Sum_probs=34.9
Q ss_pred CceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccch
Q 039861 229 TCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPE 277 (557)
Q Consensus 229 ~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 277 (557)
++|++|++ ++|.++++|..+++|++|++|++++|. +.++|.
T Consensus 1 ~~L~~L~l-------~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDL-------SNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEE-------TSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEc-------cCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47899999 999999999889999999999999998 887764
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=3.5e-07 Score=92.71 Aligned_cols=118 Identities=24% Similarity=0.213 Sum_probs=70.0
Q ss_pred CcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCc
Q 039861 244 SVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRY 322 (557)
Q Consensus 244 ~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~ 322 (557)
++|.+..+-.++.-++.|+.|||++|+ +.+.- .+..+++|++|||+.|. +..+|.- .... +|+.|.+++| .++.
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN-~l~t 246 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN-ALTT 246 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc-HHHh
Confidence 566666666666667777777777776 66553 56677777777777755 6666641 1222 2677777766 3444
Q ss_pred ccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCC
Q 039861 323 LPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLG 369 (557)
Q Consensus 323 ~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 369 (557)
+ .++.+|++|+.|++.+|-... ...+.-|-.|..|+.|.+.+.+
T Consensus 247 L-~gie~LksL~~LDlsyNll~~--hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 L-RGIENLKSLYGLDLSYNLLSE--HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-hhHHhhhhhhccchhHhhhhc--chhhhHHHHHHHHHHHhhcCCc
Confidence 4 356677777777766665443 3334444444555555555543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=4.4e-06 Score=67.17 Aligned_cols=84 Identities=30% Similarity=0.365 Sum_probs=56.4
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhhcc-cCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKL-LHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGI 303 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l-~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i 303 (557)
+....+|...+| ++|.++++|+.+... +.++.|++++|. +.++|.++..++.|+.|+++.|. +...|.-+
T Consensus 49 l~~~~el~~i~l-------s~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 49 LSKGYELTKISL-------SDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HhCCceEEEEec-------ccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 455566666677 677777777655433 366777777776 77777667777777777777765 66666666
Q ss_pred cCCCCCcEeecCCC
Q 039861 304 GKLRKLMYIDNDDT 317 (557)
Q Consensus 304 ~~L~~L~~L~l~~~ 317 (557)
..|.+|-.|+..++
T Consensus 120 ~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 120 APLIKLDMLDSPEN 133 (177)
T ss_pred HHHHhHHHhcCCCC
Confidence 66777777776666
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=2.2e-05 Score=76.71 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=13.4
Q ss_pred ccccchhhhcccCCCeeecccCCcccccch
Q 039861 248 IKEIPTNIEKLLHLKYLNLKSQNKIEKLPE 277 (557)
Q Consensus 248 l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 277 (557)
++.+|..+. .+|++|++++|..+..+|.
T Consensus 85 LtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 85 LTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred cccCCchhh--hhhhheEccCccccccccc
Confidence 444444331 3555555555533555554
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=8.4e-06 Score=82.77 Aligned_cols=105 Identities=23% Similarity=0.364 Sum_probs=84.4
Q ss_pred cCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccch
Q 039861 198 VKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPE 277 (557)
Q Consensus 198 ~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 277 (557)
+..++.|..+++..|.+. . +...+..+.+|++|++ ++|.|+.+. ++..+..|+.|++.+|. +..++.
T Consensus 91 l~~~~~l~~l~l~~n~i~---~-i~~~l~~~~~L~~L~l-------s~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~ 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE---K-IENLLSSLVNLQVLDL-------SFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG 157 (414)
T ss_pred cccccceeeeeccccchh---h-cccchhhhhcchheec-------ccccccccc-chhhccchhhheeccCc-chhccC
Confidence 344889999999999843 3 2222677999999999 899998885 47788889999999998 888865
Q ss_pred hhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCC
Q 039861 278 TLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDT 317 (557)
Q Consensus 278 ~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 317 (557)
+..++.|+.+++++|. +..++.. ...+.+|+.+.+.+|
T Consensus 158 -~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 158 -LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred -CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence 7779999999999977 6666543 578899999999988
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=2e-06 Score=78.30 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=38.9
Q ss_pred cceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc-ccchhhhcccCCCeeecccCCcccccc--hhh
Q 039861 203 GLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-EIPTNIEKLLHLKYLNLKSQNKIEKLP--ETL 279 (557)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp--~~~ 279 (557)
.|+.++++...+.. ..+-..++.+..|+.|.| +++.+. .+-..+.+=.+|+.|+++.|..+++-. --+
T Consensus 186 Rlq~lDLS~s~it~--stl~~iLs~C~kLk~lSl-------Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV--STLHGILSQCSKLKNLSL-------EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhHHhhcchhheeH--HHHHHHHHHHHhhhhccc-------cccccCcHHHHHHhccccceeeccccccccchhHHHHHH
Confidence 35555555544211 113333455555555555 444433 233344455555555555555444321 224
Q ss_pred hccCcCcEeecCCcc
Q 039861 280 CELHNLERLNVDDCE 294 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~ 294 (557)
.++..|+.|+++.|.
T Consensus 257 ~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCF 271 (419)
T ss_pred HhhhhHhhcCchHhh
Confidence 455555555555554
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=8.6e-05 Score=72.71 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=83.4
Q ss_pred hcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCC-CCCC
Q 039861 396 EALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVES-DTDG 474 (557)
Q Consensus 396 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~ 474 (557)
+.+..+.+++.|++++|.+......|..+..|.+.+|..+..+|..- .++|++|++++|..+..+|.......- ....
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~ 124 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPESVRSLEIKGSAT 124 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccccceEEeCCCCC
Confidence 34455678999999988665522224457788999988887777521 358999999998777766654321110 0000
Q ss_pred cccccc-cccccccccccccccccccccccccccccC-CccceeeeccCccccCCCCCcCCCCCcceEEEecCC
Q 039861 475 SSVIAF-PKLKKLEFRNMEELEEWDCGTAIKGEIIIM-PRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCP 546 (557)
Q Consensus 475 ~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 546 (557)
..+..+ ++|+.|.+.+++....+.. | ..+ ++|++|.+++|..+ .+|..+ +.+|+.|+++.|.
T Consensus 125 ~~L~~LPssLk~L~I~~~n~~~~~~l----p---~~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 125 DSIKNVPNGLTSLSINSYNPENQARI----D---NLISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIEQ 188 (426)
T ss_pred cccccCcchHhheecccccccccccc----c---cccCCcccEEEecCCCcc-cCcccc--cccCcEEEecccc
Confidence 112233 3566666643221111110 1 112 57999999999744 456543 4699999987763
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=4.8e-06 Score=79.37 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCCCccEEEEeecCCcCCC----CCccc--ccCccccCccccCC--CCC-CCCCCCcCeeeeccccCceEecccccCCCC
Q 039861 400 PPPNLKKLQIYDYRGRRNV----VPKNW--IMDLSLFRCRNCEH--LPP-LGKLPSLEYLEIEGMQSVKRVGNEFLGVES 470 (557)
Q Consensus 400 ~~~~L~~L~l~~~~~~~~~----~~~~~--l~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 470 (557)
..++|+.|.+.++...... +.-.| +..+++..|....+ +-. -.+.|.|+.|.++.|..++.-+.......
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~- 396 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS- 396 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc-
Confidence 3467777777766532200 10111 33455555543322 212 34789999999999886655422222211
Q ss_pred CCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCC--CcCCCCCcceE
Q 039861 471 DTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD--HLLQKSTLQKL 540 (557)
Q Consensus 471 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L 540 (557)
..++..|..+.+.+|+.+++-.. .....+++|+.+++.+|+....-+. .-.++++++..
T Consensus 397 ------~c~~~~l~~lEL~n~p~i~d~~L-----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 397 ------SCSLEGLEVLELDNCPLITDATL-----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ------cccccccceeeecCCCCchHHHH-----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 23577899999999998765332 4566789999999999987764332 12235555443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=5.9e-05 Score=80.21 Aligned_cols=138 Identities=20% Similarity=0.134 Sum_probs=76.1
Q ss_pred cCCCeeecccCCccccc-chhhh-ccCcCcEeecCCcccc-ccCcccccCCCCCcEeecCCCCCCCcccccccCcccccc
Q 039861 259 LHLKYLNLKSQNKIEKL-PETLC-ELHNLERLNVDDCENL-RELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRR 335 (557)
Q Consensus 259 ~~L~~L~L~~~~~l~~l-p~~~~-~l~~L~~L~l~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 335 (557)
.+|++|+++|...+..- |..++ .||.|+.|.++|-... .++-.-..+++||..||++++ .++.+ .+++.|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 45666666665433221 22232 4567777776662211 111122345667777777776 44444 56777777777
Q ss_pred cCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCC
Q 039861 336 VTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRG 414 (557)
Q Consensus 336 L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~ 414 (557)
|.+.+..... ...+..|-+|++|+.|+|+......... ......+.-..+|+|+.|+.++...
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~--------------ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTK--------------IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchH--------------HHHHHHHhcccCccccEEecCCcch
Confidence 7776665544 4456667777777777777644332210 1122334445577888888776543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=0.00012 Score=77.84 Aligned_cols=130 Identities=23% Similarity=0.331 Sum_probs=90.5
Q ss_pred CceEEEEEEecCCC--CcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc
Q 039861 175 KKIRHLMLIVRGRA--SVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP 252 (557)
Q Consensus 175 ~~~r~l~l~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp 252 (557)
..++++.+.+...- ..+..+. .-+|.|++|.+.+-.+.. ..+-....++++|+.||+ ++++++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig---~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDI-------S~TnI~nl- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG---TMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDI-------SGTNISNL- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh---hhCcccceEEecCceecc--hhHHHHhhccCccceeec-------CCCCccCc-
Confidence 55666666553321 1111221 238999999998876421 224455678999999999 89999888
Q ss_pred hhhhcccCCCeeecccCCcccccc--hhhhccCcCcEeecCCccccccC--cc----cccCCCCCcEeecCCCC
Q 039861 253 TNIEKLLHLKYLNLKSQNKIEKLP--ETLCELHNLERLNVDDCENLREL--PR----GIGKLRKLMYIDNDDTD 318 (557)
Q Consensus 253 ~~~~~l~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~l--p~----~i~~L~~L~~L~l~~~~ 318 (557)
.++++|++|+.|.+++-. ++.-+ ..+.+|++|++||+|........ .. .-..|++|+.||.+++.
T Consensus 189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 789999999999998776 55433 45789999999999985533221 11 11348999999999873
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.50 E-value=0.00011 Score=68.78 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=87.0
Q ss_pred CCcceEEEeccCCccc-hhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh-------hhcccCCCeeecccCCcc
Q 039861 201 LRGLRSFLVKSDEYSW-SSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN-------IEKLLHLKYLNLKSQNKI 272 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~-------~~~l~~L~~L~L~~~~~l 272 (557)
+..+..+++++|.+.. -...+...+.+.+.||..++++.- .+-...++|+. +-..++|++|+||.|- +
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f---tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF---TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-F 104 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh---cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-c
Confidence 5566667777776421 122344556666777777773221 12223344433 3344577777777775 3
Q ss_pred c-c----cchhhhccCcCcEeecCCccccccC--------------cccccCCCCCcEeecCCCCCCCccc-----cccc
Q 039861 273 E-K----LPETLCELHNLERLNVDDCENLREL--------------PRGIGKLRKLMYIDNDDTDSLRYLP-----VGIG 328 (557)
Q Consensus 273 ~-~----lp~~~~~l~~L~~L~l~~~~~l~~l--------------p~~i~~L~~L~~L~l~~~~~l~~~p-----~~i~ 328 (557)
. . +-+-+..+..|++|.+.+|. +... .+.++.-++|+.+....| .+..-+ ..+.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQ 182 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHH
Confidence 3 2 22335566777777777765 2211 112334566777777666 333322 2244
Q ss_pred CcccccccCceEecCccCCc-cCccccccCCcCCCceecCC
Q 039861 329 ELIRLRRVTKLVVGGGYDRA-CSLGSLKKLNLLRECTIRGL 368 (557)
Q Consensus 329 ~L~~L~~L~~~~~~~~~~~~-~~l~~L~~L~~L~~l~i~~~ 368 (557)
..+.|+.+.+..+++..... .....+..+++|+.|+++..
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 45566666666665544222 22345667777777777654
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00014 Score=66.46 Aligned_cols=83 Identities=24% Similarity=0.295 Sum_probs=46.3
Q ss_pred cCCceeEEEeccccCCCCcCcccc---cchhhhcccCCCeeecccCCcccccchhh-hccCcCcEeecCCccc-cccCcc
Q 039861 227 KLTCLRALNLKVRKPWSSVNDIKE---IPTNIEKLLHLKYLNLKSQNKIEKLPETL-CELHNLERLNVDDCEN-LRELPR 301 (557)
Q Consensus 227 ~l~~L~~L~L~~~~~~~~~~~l~~---lp~~~~~l~~L~~L~L~~~~~l~~lp~~~-~~l~~L~~L~l~~~~~-l~~lp~ 301 (557)
..+.++.||| .+|.|.. +-.-+.+|++|++|+++.|. +..--... ..+.+|++|-+.|... ....-.
T Consensus 69 ~~~~v~elDL-------~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDL-------TGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred Hhhhhhhhhc-------ccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhh
Confidence 4566777777 6665542 33335567777777777665 33211111 2455777777776331 112223
Q ss_pred cccCCCCCcEeecCCC
Q 039861 302 GIGKLRKLMYIDNDDT 317 (557)
Q Consensus 302 ~i~~L~~L~~L~l~~~ 317 (557)
.+..+++++.|+++.|
T Consensus 141 ~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhcchhhhhhhhccc
Confidence 3456677777777766
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=4.1e-05 Score=61.72 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=67.5
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
...|....+++|. .....+..-..++.++.|+| ..|.+.++|..+..++.|+.|+++.|. +...|..|.
T Consensus 52 ~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl-------~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNG---FKKFPKKFTIKFPTATTLNL-------ANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIA 120 (177)
T ss_pred CceEEEEecccch---hhhCCHHHhhccchhhhhhc-------chhhhhhchHHHhhhHHhhhcccccCc-cccchHHHH
Confidence 5566666777776 33322332344567888888 888888999888889999999999888 888888888
Q ss_pred ccCcCcEeecCCccccccCccc
Q 039861 281 ELHNLERLNVDDCENLRELPRG 302 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~ 302 (557)
.|.+|-.|+..+|. ...+|-.
T Consensus 121 ~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhHHHhcCCCCc-cccCcHH
Confidence 88889899888866 6666654
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=8.5e-06 Score=82.97 Aligned_cols=108 Identities=25% Similarity=0.282 Sum_probs=56.8
Q ss_pred HHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchh-hhccCcCcEeecCCccccccCc
Q 039861 222 PQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPET-LCELHNLERLNVDDCENLRELP 300 (557)
Q Consensus 222 p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp 300 (557)
..++.-++.|+.||| +.|.+.+.. .+..|.+|+.|||+.|. +..+|.. ...+ +|+.|.+++|. ++.+-
T Consensus 180 D~SLqll~ale~LnL-------shNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~ 248 (1096)
T KOG1859|consen 180 DESLQLLPALESLNL-------SHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNA-LTTLR 248 (1096)
T ss_pred HHHHHHHHHhhhhcc-------chhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccH-HHhhh
Confidence 334445556666666 555555543 45566666666666666 6666531 1122 26666666654 55552
Q ss_pred ccccCCCCCcEeecCCCCCCCccc--ccccCcccccccCceEec
Q 039861 301 RGIGKLRKLMYIDNDDTDSLRYLP--VGIGELIRLRRVTKLVVG 342 (557)
Q Consensus 301 ~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~ 342 (557)
++.+|++|+.||+++| .+.... .-++.|..|+.|++-+|.
T Consensus 249 -gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 -GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 4566666666666665 222111 113445555555555444
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=8.3e-05 Score=67.98 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=52.6
Q ss_pred CCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCc
Q 039861 443 KLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCP 522 (557)
Q Consensus 443 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 522 (557)
-+|++..+-+.+|+ ++..... .+...||.+-.|.+.. +++.+|.. -+.+..||.|..|.++++|
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~e----------k~se~~p~~~~LnL~~-~~idswas----vD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSE----------KGSEPFPSLSCLNLGA-NNIDSWAS----VDALNGFPQLVDLRVSENP 260 (418)
T ss_pred hcccchheeeecCc-ccchhhc----------ccCCCCCcchhhhhcc-cccccHHH----HHHHcCCchhheeeccCCc
Confidence 45677777777665 3322111 1123577888888887 56777765 4556779999999999998
Q ss_pred cccCCCCC------cCCCCCcceEE
Q 039861 523 KLKALPDH------LLQKSTLQKLE 541 (557)
Q Consensus 523 ~l~~lp~~------~~~l~~L~~L~ 541 (557)
....+... ++.+++++.|+
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccccccCCcceEEEEeeccceEEec
Confidence 76655432 33455555554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.00044 Score=59.87 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=46.3
Q ss_pred CCeeecccCCcccccchhhhccCcCcEeecCCccccccCccccc-CCCCCcEeecCCCCCCCccc--ccccCcccccccC
Q 039861 261 LKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIG-KLRKLMYIDNDDTDSLRYLP--VGIGELIRLRRVT 337 (557)
Q Consensus 261 L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~-~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~ 337 (557)
...+||++|. +..++. +..++.|.+|.+.+|. +..+-+.+. -+++|..|.+.+| ++..+. ..+..++.|+.|.
T Consensus 44 ~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 3445555555 444433 4455555555555544 444443442 2344555555554 333332 1233444555555
Q ss_pred ceEecCccCCccCccccccCCcCCCceec
Q 039861 338 KLVVGGGYDRACSLGSLKKLNLLRECTIR 366 (557)
Q Consensus 338 ~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 366 (557)
+..+..+.......--+..+++|+.++..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 55444443222233334445555555443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.52 E-value=0.00033 Score=63.35 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=32.7
Q ss_pred hhhccCcCcEeecCCccccccCccc----ccCCCCCcEeecCCCCCCCc
Q 039861 278 TLCELHNLERLNVDDCENLRELPRG----IGKLRKLMYIDNDDTDSLRY 322 (557)
Q Consensus 278 ~~~~l~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~ 322 (557)
.+-++++|++.++++|..-...|+. |++-+.|.||.+++| .+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp 134 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGP 134 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCc
Confidence 3557788888888888765566654 567789999999998 4443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.51 E-value=0.0048 Score=53.60 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=52.0
Q ss_pred ceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcc-cCCCeeecccCCcccccc--hhhh
Q 039861 204 LRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKL-LHLKYLNLKSQNKIEKLP--ETLC 280 (557)
Q Consensus 204 L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l-~~L~~L~L~~~~~l~~lp--~~~~ 280 (557)
...+++.+|++... +. |..+..|..|.| +.|.|+.+-+.+..+ ++|..|.|.+|+ +.++- +.+.
T Consensus 44 ~d~iDLtdNdl~~l----~~-lp~l~rL~tLll-------~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa 110 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL----DN-LPHLPRLHTLLL-------NNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLA 110 (233)
T ss_pred cceecccccchhhc----cc-CCCccccceEEe-------cCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhc
Confidence 34455555553221 11 445666666666 666666654444433 346666666665 54442 2245
Q ss_pred ccCcCcEeecCCccccccCcc----cccCCCCCcEeecCC
Q 039861 281 ELHNLERLNVDDCENLRELPR----GIGKLRKLMYIDNDD 316 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~ 316 (557)
.+++|++|.+-+|. +..-+. -+.++++|+.||...
T Consensus 111 ~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 56666666666654 333221 245666677666654
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.04 E-value=0.0023 Score=34.32 Aligned_cols=17 Identities=35% Similarity=0.845 Sum_probs=7.3
Q ss_pred CCeeecccCCcccccchh
Q 039861 261 LKYLNLKSQNKIEKLPET 278 (557)
Q Consensus 261 L~~L~L~~~~~l~~lp~~ 278 (557)
|++|++++|. ++.+|++
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 3444444443 4444433
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.001 Score=60.46 Aligned_cols=99 Identities=27% Similarity=0.319 Sum_probs=58.2
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccc--hh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLP--ET 278 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp--~~ 278 (557)
+.+.+-|+..++.++.+. ...+|+.|++|.| +-|.|..+. .+..+++|+.|.|+.|. |.++- ..
T Consensus 18 l~~vkKLNcwg~~L~DIs-----ic~kMp~lEVLsL-------SvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-----ICEKMPLLEVLSL-------SVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCCccHHH-----HHHhcccceeEEe-------eccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 445555666666532221 2456777777777 777776663 36677777777777776 66554 23
Q ss_pred hhccCcCcEeecCCccccccCccc-----ccCCCCCcEee
Q 039861 279 LCELHNLERLNVDDCENLRELPRG-----IGKLRKLMYID 313 (557)
Q Consensus 279 ~~~l~~L~~L~l~~~~~l~~lp~~-----i~~L~~L~~L~ 313 (557)
+.++++|++|-|..|.....-+.. +.-|+||+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 456667777766665544433321 34556666664
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.02 E-value=0.0027 Score=57.50 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=35.1
Q ss_pred cccCCCeeecccC--CcccccchhhhccCcCcEeecCCccccccCc--ccccCCCCCcEeecCCCC
Q 039861 257 KLLHLKYLNLKSQ--NKIEKLPETLCELHNLERLNVDDCENLRELP--RGIGKLRKLMYIDNDDTD 318 (557)
Q Consensus 257 ~l~~L~~L~L~~~--~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 318 (557)
.|++|++|.++.| .....++-..-++++|++|++++|. +..+. ..+..+.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 4667777777777 4233454445556777777777765 33211 123455666666776663
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.97 E-value=0.0014 Score=68.40 Aligned_cols=63 Identities=27% Similarity=0.260 Sum_probs=43.2
Q ss_pred cccCCCeeecccCCcccc--cchhhhccCcCcEeecCCc-cccccCc----ccccCCCCCcEeecCCCCC
Q 039861 257 KLLHLKYLNLKSQNKIEK--LPETLCELHNLERLNVDDC-ENLRELP----RGIGKLRKLMYIDNDDTDS 319 (557)
Q Consensus 257 ~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~-~~l~~lp----~~i~~L~~L~~L~l~~~~~ 319 (557)
.++.|+.|.+.++..+.. +-......++|+.|++++| ......+ .....+++|+.|+++.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 467888888888876765 4355778899999999883 3333322 1234567888888888743
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0057 Score=55.44 Aligned_cols=83 Identities=36% Similarity=0.450 Sum_probs=46.4
Q ss_pred HhcCCceeEEEeccccCCCCcC--ccc-ccchhhhcccCCCeeecccCCcccc---cchhhhccCcCcEeecCCcccccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVN--DIK-EIPTNIEKLLHLKYLNLKSQNKIEK---LPETLCELHNLERLNVDDCENLRE 298 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~--~l~-~lp~~~~~l~~L~~L~L~~~~~l~~---lp~~~~~l~~L~~L~l~~~~~l~~ 298 (557)
|..+++|+.|.+ +.| .+. .++....++++|++|++++|. +.. ++. ...+.+|..|++.+|....
T Consensus 61 ~P~Lp~LkkL~l-------sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~nL~~Ldl~n~~~~~- 130 (260)
T KOG2739|consen 61 FPKLPKLKKLEL-------SDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELENLKSLDLFNCSVTN- 130 (260)
T ss_pred CCCcchhhhhcc-------cCCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcchhhhhcccCCccc-
Confidence 334667777777 555 222 344444555777777777776 543 222 5566677777777766322
Q ss_pred Ccc----cccCCCCCcEeecCCC
Q 039861 299 LPR----GIGKLRKLMYIDNDDT 317 (557)
Q Consensus 299 lp~----~i~~L~~L~~L~l~~~ 317 (557)
+-. .+.-+++|.+|+-...
T Consensus 131 l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 131 LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccHHHHHHHHhhhhcccccccc
Confidence 211 1344566666665544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.0011 Score=60.40 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=73.8
Q ss_pred cCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcc--ccc
Q 039861 227 KLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPR--GIG 304 (557)
Q Consensus 227 ~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~--~i~ 304 (557)
.+.+.+.|++ -++.+..+. -+.+|+.|++|.|+-|. |..+-. +..+++|++|.|+.|. +..+-+ -+.
T Consensus 17 dl~~vkKLNc-------wg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNC-------WGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHHhhhhcc-------cCCCccHHH-HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 3556677787 555666553 35688999999999998 888854 8899999999999976 666543 357
Q ss_pred CCCCCcEeecCCCCCCCccccc-----ccCcccccccCceE
Q 039861 305 KLRKLMYIDNDDTDSLRYLPVG-----IGELIRLRRVTKLV 340 (557)
Q Consensus 305 ~L~~L~~L~l~~~~~l~~~p~~-----i~~L~~L~~L~~~~ 340 (557)
++++|+.|.+..|.....-+.. +.-|++|+.|+-..
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 8889999988887554444332 45567777776443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.12 E-value=0.013 Score=31.34 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=17.8
Q ss_pred ceeEEEeccccCCCCcCcccccchhhhcc
Q 039861 230 CLRALNLKVRKPWSSVNDIKEIPTNIEKL 258 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~~lp~~~~~l 258 (557)
+|++||| ++|.++.+|++|++|
T Consensus 1 ~L~~Ldl-------s~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDL-------SGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEE-------TSSEESEEGTTTTT-
T ss_pred CccEEEC-------CCCcCEeCChhhcCC
Confidence 5889999 888999999877654
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.22 E-value=0.0038 Score=55.34 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=52.6
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCccccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIG 304 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~ 304 (557)
+..++.-++||+ +.+.+..+-..++.++.|..|+++.+. +..+|..++.+..++.+++..|. ....|.+.+
T Consensus 38 i~~~kr~tvld~-------~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDL-------SSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred hhccceeeeehh-------hhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 344556666666 555555555556666666666666666 66666666666666666666544 666666666
Q ss_pred CCCCCcEeecCCC
Q 039861 305 KLRKLMYIDNDDT 317 (557)
Q Consensus 305 ~L~~L~~L~l~~~ 317 (557)
+++.++++++.++
T Consensus 109 k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 109 KEPHPKKNEQKKT 121 (326)
T ss_pred ccCCcchhhhccC
Confidence 6666666666655
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.03 E-value=0.03 Score=27.75 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=8.4
Q ss_pred CccceeeeccCccccCCC
Q 039861 511 PRLSSLSIQSCPKLKALP 528 (557)
Q Consensus 511 ~~L~~L~l~~c~~l~~lp 528 (557)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456677777774 65554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.95 E-value=0.036 Score=27.46 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=5.5
Q ss_pred CCCeeecccCCcccccc
Q 039861 260 HLKYLNLKSQNKIEKLP 276 (557)
Q Consensus 260 ~L~~L~L~~~~~l~~lp 276 (557)
+|+.|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 34444444444 44443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.83 E-value=0.12 Score=42.63 Aligned_cols=102 Identities=15% Similarity=0.266 Sum_probs=47.8
Q ss_pred cCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccc
Q 039861 198 VKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP 276 (557)
Q Consensus 198 ~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp 276 (557)
|.++++|+.+.+... ...+-...|..++.|+.+.+ ..+ +..++ ..+.++..|+++.+.+ . +..++
T Consensus 8 F~~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~-------~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~ 73 (129)
T PF13306_consen 8 FYNCSNLESITFPNT----IKKIGENAFSNCTSLKSINF-------PNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIG 73 (129)
T ss_dssp TTT-TT--EEEETST------EE-TTTTTT-TT-SEEEE-------SST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-
T ss_pred HhCCCCCCEEEECCC----eeEeChhhcccccccccccc-------ccc-ccccceeeeecccccccccccc-c-ccccc
Confidence 344667777766532 22333444667777777777 443 55555 3466666777777754 2 55554
Q ss_pred -hhhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCC
Q 039861 277 -ETLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDD 316 (557)
Q Consensus 277 -~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~ 316 (557)
..+..+++|+.+++..+ +..++.. +.+. +|+.+.+..
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 34555777777777542 4444433 4554 666666654
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.11 E-value=0.004 Score=55.23 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=78.1
Q ss_pred ccccc-hhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCccccc
Q 039861 248 IKEIP-TNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVG 326 (557)
Q Consensus 248 l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~ 326 (557)
+.++| ..+.....-+.||++.+. +..+-..++.++.|..||++.|. +..+|++++.+..++++++..| .....|.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCcc
Confidence 34555 456777888999999998 88888889999999999999866 8999999999999999999887 77889999
Q ss_pred ccCcccccccCceEec
Q 039861 327 IGELIRLRRVTKLVVG 342 (557)
Q Consensus 327 i~~L~~L~~L~~~~~~ 342 (557)
.++++.++.++.-.+.
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 9999999988765544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.012 Score=51.21 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeecc
Q 039861 441 LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQS 520 (557)
Q Consensus 441 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 520 (557)
+..+++++.|.+.+|..+....-+..+ +.+|+|+.|++++|+.+++-.. ..+..+++|+.|.+++
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~----------~~~~~L~~L~lsgC~rIT~~GL-----~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG----------GLAPSLQDLDLSGCPRITDGGL-----ACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc----------ccccchheeeccCCCeechhHH-----HHHHHhhhhHHHHhcC
Confidence 445555555555555444333222222 1345555555555555443221 3344555555555554
Q ss_pred C
Q 039861 521 C 521 (557)
Q Consensus 521 c 521 (557)
-
T Consensus 186 l 186 (221)
T KOG3864|consen 186 L 186 (221)
T ss_pred c
Confidence 3
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=0.017 Score=50.42 Aligned_cols=64 Identities=22% Similarity=0.460 Sum_probs=32.3
Q ss_pred cccccccccccccccccccccccccccccccCCccceeeeccCccccCCCC-CcCCCCCcceEEEecCC
Q 039861 479 AFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD-HLLQKSTLQKLEIWGCP 546 (557)
Q Consensus 479 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~ 546 (557)
.++.++.|.+.+|..+.+|.. ...-+-.|+|+.|+|++|+.+++--- .+..+++|+.|.+.+-|
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L----~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCL----ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHH----HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 455566666666666555543 11111346666666666665553221 22335556655555544
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.17 E-value=0.2 Score=45.89 Aligned_cols=94 Identities=16% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCcceEEEeccCCccc-hhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-------hhhhcccCCCeeecccCCcc
Q 039861 201 LRGLRSFLVKSDEYSW-SSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-------TNIEKLLHLKYLNLKSQNKI 272 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-------~~~~~l~~L~~L~L~~~~~l 272 (557)
+..+..+++++|.+.. ....+...+.+-++|++.++..-. .+-...++| +.+-++++|+..+|+.|..-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f---tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF---TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh---hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 6777888888887532 123455667778888888883211 111122333 34567889999999988733
Q ss_pred cccc----hhhhccCcCcEeecCCcccccc
Q 039861 273 EKLP----ETLCELHNLERLNVDDCENLRE 298 (557)
Q Consensus 273 ~~lp----~~~~~l~~L~~L~l~~~~~l~~ 298 (557)
...| +.|+.-+.|.+|.+++|. +..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 3444 456677899999999876 443
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.86 E-value=0.037 Score=57.59 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=10.3
Q ss_pred CCCccEEEEeecCCc
Q 039861 401 PPNLKKLQIYDYRGR 415 (557)
Q Consensus 401 ~~~L~~L~l~~~~~~ 415 (557)
.++|+.|.+.++...
T Consensus 187 ~~~L~~l~l~~~~~~ 201 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKI 201 (482)
T ss_pred CchhhHhhhcccccC
Confidence 577788877776543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.69 E-value=0.22 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=10.6
Q ss_pred cCCCeeecccCCcccccchh
Q 039861 259 LHLKYLNLKSQNKIEKLPET 278 (557)
Q Consensus 259 ~~L~~L~L~~~~~l~~lp~~ 278 (557)
.+|++|+|++|. ++.+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455566666555 5555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.69 E-value=0.22 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=10.6
Q ss_pred cCCCeeecccCCcccccchh
Q 039861 259 LHLKYLNLKSQNKIEKLPET 278 (557)
Q Consensus 259 ~~L~~L~L~~~~~l~~lp~~ 278 (557)
.+|++|+|++|. ++.+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455566666555 5555543
No 81
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.37 E-value=2.8 Score=47.65 Aligned_cols=123 Identities=19% Similarity=0.283 Sum_probs=75.5
Q ss_pred HHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhhh-hcccchhHHHH-hhccCChhhhHHHhhhcCCCCCC
Q 039861 3 GREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELEA-IKKGLLAPLLL-SYNELPSKVKQCFTYCAVFPKDY 80 (557)
Q Consensus 3 ~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cfl~~a~fp~~~ 80 (557)
..++.+.|+|.|+++..++..+....... ..... .... ....+...+.- -|+.||++.+..++..|+++
T Consensus 208 ~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~--- 278 (903)
T PRK04841 208 SSRLCDDVEGWATALQLIALSARQNNSSL--HDSAR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR--- 278 (903)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---
Confidence 46799999999999999998875442110 00111 1111 12235554433 48899999999999999986
Q ss_pred ccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEechHHHHHHHHhc
Q 039861 81 DIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKMHDIVHDFAQYLC 150 (557)
Q Consensus 81 ~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~~~~~i~ 150 (557)
.++.+ +...-. | . +.+.+.+++|.+++++..... ..+. ++++|++++++.....
T Consensus 279 ~~~~~-l~~~l~--~---~-------~~~~~~L~~l~~~~l~~~~~~-~~~~--~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 279 SMNDA-LIVRVT--G---E-------ENGQMRLEELERQGLFIQRMD-DSGE--WFRYHPLFASFLRHRC 332 (903)
T ss_pred cCCHH-HHHHHc--C---C-------CcHHHHHHHHHHCCCeeEeec-CCCC--EEehhHHHHHHHHHHH
Confidence 33332 222111 1 1 124667899999998643211 1122 4678999999987654
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.63 E-value=1.8 Score=35.47 Aligned_cols=113 Identities=14% Similarity=0.277 Sum_probs=53.1
Q ss_pred ceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hh
Q 039861 176 KIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TN 254 (557)
Q Consensus 176 ~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~ 254 (557)
.++.+.+.. ....+... .|.+++.|+.+.+..+ ...+-...|..++.|+.+.+ .. .+..++ ..
T Consensus 13 ~l~~i~~~~-~~~~I~~~---~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~-------~~-~~~~i~~~~ 76 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGEN---AFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITF-------PN-NLKSIGDNA 76 (129)
T ss_dssp T--EEEETS-T--EE-TT---TTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEE-------TS-TT-EE-TTT
T ss_pred CCCEEEECC-CeeEeChh---hccccccccccccccc----ccccceeeeecccccccccc-------cc-ccccccccc
Confidence 566665542 33333333 3455778888888764 22222345788888999999 54 455555 44
Q ss_pred hhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCccc-ccCCCCC
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPRG-IGKLRKL 309 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L 309 (557)
+..+.+|+.+.+..+ +..++ ..+.+. +|+.+.+.. .+..++.. +.+.++|
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 667889999998654 56665 456665 888888775 34555432 4444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.30 E-value=0.86 Score=25.29 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCceeEEEeccccCCCCcCcccccchhh
Q 039861 228 LTCLRALNLKVRKPWSSVNDIKEIPTNI 255 (557)
Q Consensus 228 l~~L~~L~L~~~~~~~~~~~l~~lp~~~ 255 (557)
+++|++|+| ++|.++.+|...
T Consensus 1 L~~L~~L~L-------~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDL-------SNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEEC-------CCCcCCcCCHHH
Confidence 467899999 899999998654
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.30 E-value=0.86 Score=25.29 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCceeEEEeccccCCCCcCcccccchhh
Q 039861 228 LTCLRALNLKVRKPWSSVNDIKEIPTNI 255 (557)
Q Consensus 228 l~~L~~L~L~~~~~~~~~~~l~~lp~~~ 255 (557)
+++|++|+| ++|.++.+|...
T Consensus 1 L~~L~~L~L-------~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDL-------SNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEEC-------CCCcCCcCCHHH
Confidence 467899999 899999998654
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.62 E-value=1.2 Score=24.84 Aligned_cols=15 Identities=27% Similarity=0.780 Sum_probs=7.7
Q ss_pred CccceeeeccCcccc
Q 039861 511 PRLSSLSIQSCPKLK 525 (557)
Q Consensus 511 ~~L~~L~l~~c~~l~ 525 (557)
|+|+.|+|++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.22 E-value=1.8 Score=24.11 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=11.4
Q ss_pred CCCeeecccCCcccccch
Q 039861 260 HLKYLNLKSQNKIEKLPE 277 (557)
Q Consensus 260 ~L~~L~L~~~~~l~~lp~ 277 (557)
+|++|++++|. ++.+|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 46667777766 666665
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.92 E-value=6.4 Score=21.99 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=6.1
Q ss_pred cCCCeeecccCC
Q 039861 259 LHLKYLNLKSQN 270 (557)
Q Consensus 259 ~~L~~L~L~~~~ 270 (557)
.+|+.|+++.|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 345555555554
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.49 E-value=7.7 Score=20.85 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=4.4
Q ss_pred CccceeeeccC
Q 039861 511 PRLSSLSIQSC 521 (557)
Q Consensus 511 ~~L~~L~l~~c 521 (557)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34555555554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.04 E-value=16 Score=20.65 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=6.5
Q ss_pred CCCeeecccCC
Q 039861 260 HLKYLNLKSQN 270 (557)
Q Consensus 260 ~L~~L~L~~~~ 270 (557)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45666666655
No 90
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=38.32 E-value=1.2e+02 Score=29.51 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=54.6
Q ss_pred hHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhh-hhcccchhHHHHhhccCChhhhHHHh-hhcCCCCC
Q 039861 2 IGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELE-AIKKGLLAPLLLSYNELPSKVKQCFT-YCAVFPKD 79 (557)
Q Consensus 2 i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~ 79 (557)
....|++.|+|.|-.+..+...+ ..|..+.... ... ..-......+...|..|++..+.-+. ....|..+
T Consensus 204 ~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 204 GALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred HHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 45789999999995443333321 1222211110 000 00022344556778889987777664 55566654
Q ss_pred CccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHH-HHHhccCccccc
Q 039861 80 YDIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFN-ILASRSFFQDFD 126 (557)
Q Consensus 80 ~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~~ 126 (557)
.+..+.+...+ . ....++++ .++ .|++.+||+...
T Consensus 276 -~~~~~~~a~~l------g-~~~~~~~~----~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 276 -PVGLDTLAAAL------G-EERDTIED----VYEPYLIQQGFIQRTP 311 (328)
T ss_pred -ceeHHHHHHHH------C-CCcchHHH----HhhHHHHHcCCcccCC
Confidence 55555543322 1 11122333 344 689999997443
No 91
>PF14162 YozD: YozD-like protein
Probab=34.42 E-value=72 Score=21.01 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=20.9
Q ss_pred HHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcc
Q 039861 90 LWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQ 123 (557)
Q Consensus 90 ~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~ 123 (557)
-.+..||++... ..+++|..-|+-|+.+|+|.
T Consensus 20 eL~kRGyvP~e~--El~eiADItFeYll~K~iId 51 (57)
T PF14162_consen 20 ELVKRGYVPTEE--ELEEIADITFEYLLEKCIID 51 (57)
T ss_pred HHHHccCCCcHH--HHHHHHHHHHHHHHHHHhhh
Confidence 344567776532 46677777777788877774
No 92
>PF13730 HTH_36: Helix-turn-helix domain
Probab=33.42 E-value=14 Score=24.81 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=29.8
Q ss_pred cCChhhhHHHhhhcCCCCCCc--c-CHHHHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCc
Q 039861 61 ELPSKVKQCFTYCAVFPKDYD--I-QKEELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFF 122 (557)
Q Consensus 61 ~L~~~~k~cfl~~a~fp~~~~--i-~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll 122 (557)
+|++.++..+.+++-|..+.. + +.+.+... . +.+ .....+++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~-~---------g~s-~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKD-L---------GVS-RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHH-H---------CcC-HHHHHHHHHHHHHCcCC
Confidence 567777777777776653222 1 22222221 1 112 45677889999999875
No 93
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=33.41 E-value=1.2e+02 Score=29.21 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=52.6
Q ss_pred hHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhh-hhcccchhHHHHhhccCChhhhHHHh-hhcCCCCC
Q 039861 2 IGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELE-AIKKGLLAPLLLSYNELPSKVKQCFT-YCAVFPKD 79 (557)
Q Consensus 2 i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~ 79 (557)
....|++.|+|.|-.+..++..+ |..+......... ..-......+..+|..++++.+..+. ..+.+. |
T Consensus 183 al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~-~ 253 (305)
T TIGR00635 183 AALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQ-G 253 (305)
T ss_pred HHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC-C
Confidence 35678999999996554444322 2221110000000 00011223355678889988777555 445554 3
Q ss_pred CccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHH-HHHhccCccccc
Q 039861 80 YDIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFN-ILASRSFFQDFD 126 (557)
Q Consensus 80 ~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~~ 126 (557)
-.+..+++.... |- . ...++..++ .|++++||....
T Consensus 254 ~~~~~~~ia~~l---g~----~----~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 254 GPVGLKTLAAAL---GE----D----ADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CcccHHHHHHHh---CC----C----cchHHHhhhHHHHHcCCcccCC
Confidence 344443333221 11 1 123445566 699999997443
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.54 E-value=33 Score=35.41 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred CCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccc
Q 039861 442 GKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNM 491 (557)
Q Consensus 442 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 491 (557)
.+.|.+..+.|+++. +..+.. +... ....|+|+.|+|+++
T Consensus 215 ~n~p~i~sl~lsnNr-L~~Ld~-~ssl--------sq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNR-LYHLDA-LSSL--------SQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccch-hhchhh-hhHH--------HHhcchhheeecccc
Confidence 356666666666633 333321 1111 234667777777664
No 95
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=21.51 E-value=1.2e+02 Score=21.19 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.3
Q ss_pred HHHHHHcCCcHHHHHHHHHhhcCCCC
Q 039861 4 REIVKKCKGLPLAAKTIASLLRSKST 29 (557)
Q Consensus 4 ~~iv~~c~GlPLal~~~g~~L~~~~~ 29 (557)
-.|++.|+|++=-+-++-++|+.|++
T Consensus 8 l~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 8 LSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 46899999999999999999998863
No 96
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=20.21 E-value=51 Score=33.91 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=14.9
Q ss_pred hhccCChhhhHHHhhh
Q 039861 58 SYNELPSKVKQCFTYC 73 (557)
Q Consensus 58 sy~~L~~~~k~cfl~~ 73 (557)
|||+|..++|.|+|++
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999985
Done!