Query 039861
Match_columns 557
No_of_seqs 459 out of 3241
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ecn_A Leucine-rich repeat pro 99.9 3.5E-26 1.2E-30 248.2 17.2 340 173-549 446-841 (876)
2 4eco_A Uncharacterized protein 99.9 1.2E-25 4E-30 239.9 16.0 339 175-549 206-601 (636)
3 4eco_A Uncharacterized protein 99.9 1.2E-24 4E-29 232.2 21.9 339 173-549 247-633 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 3E-25 1E-29 240.9 15.6 308 221-553 440-823 (876)
5 4fmz_A Internalin; leucine ric 99.9 7.8E-25 2.7E-29 216.6 17.3 298 175-547 44-345 (347)
6 3rgz_A Protein brassinosteroid 99.9 3.8E-25 1.3E-29 241.4 16.4 269 175-462 269-555 (768)
7 3rgz_A Protein brassinosteroid 99.9 6.5E-25 2.2E-29 239.6 15.6 342 175-553 294-722 (768)
8 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-24 4.9E-29 231.4 15.6 345 175-550 32-439 (606)
9 3o6n_A APL1; leucine-rich repe 99.9 3.2E-24 1.1E-28 215.7 15.5 300 175-548 45-352 (390)
10 2id5_A Lingo-1, leucine rich r 99.9 6E-24 2E-28 219.7 17.7 292 202-548 32-333 (477)
11 4fcg_A Uncharacterized protein 99.9 4.4E-24 1.5E-28 208.7 14.9 233 227-545 79-311 (328)
12 2z7x_B TOLL-like receptor 1, v 99.9 7E-24 2.4E-28 221.7 17.2 136 175-329 21-162 (520)
13 3o6n_A APL1; leucine-rich repe 99.9 5.3E-24 1.8E-28 214.0 15.4 281 201-548 44-331 (390)
14 3v47_A TOLL-like receptor 5B a 99.9 5.7E-24 2E-28 218.6 15.2 342 175-550 30-410 (455)
15 2z63_A TOLL-like receptor 4, v 99.9 1.4E-24 4.8E-29 229.8 10.7 145 175-333 28-175 (570)
16 3t6q_A CD180 antigen; protein- 99.9 1.3E-23 4.4E-28 224.0 17.6 153 175-342 33-190 (606)
17 3vq2_A TLR4, TOLL-like recepto 99.9 3.9E-24 1.3E-28 228.0 13.0 106 175-294 56-164 (606)
18 3oja_B Anopheles plasmodium-re 99.9 7.9E-24 2.7E-28 224.5 14.6 298 176-548 52-358 (597)
19 2z81_A CD282 antigen, TOLL-lik 99.9 5.7E-24 2E-28 224.0 12.7 346 175-548 26-510 (549)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-23 1.3E-27 218.1 18.8 126 175-319 52-181 (562)
21 2z63_A TOLL-like receptor 4, v 99.9 1E-23 3.4E-28 223.3 14.0 121 175-309 52-175 (570)
22 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.4E-28 215.9 14.2 317 201-547 29-383 (455)
23 3oja_B Anopheles plasmodium-re 99.9 1.6E-23 5.5E-28 222.1 15.1 282 201-548 50-337 (597)
24 2z7x_B TOLL-like receptor 1, v 99.9 2.6E-23 8.7E-28 217.4 15.7 144 178-343 3-150 (520)
25 1ziw_A TOLL-like receptor 3; i 99.9 6.8E-23 2.3E-27 221.4 18.3 156 175-345 25-185 (680)
26 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-23 4.4E-28 221.3 12.2 142 186-345 16-162 (549)
27 4fmz_A Internalin; leucine ric 99.9 6.6E-23 2.3E-27 202.7 16.1 278 201-548 43-324 (347)
28 1o6v_A Internalin A; bacterial 99.9 1.1E-22 3.8E-27 209.2 17.9 274 225-548 108-388 (466)
29 3t6q_A CD180 antigen; protein- 99.9 3E-22 1E-26 213.4 20.8 267 260-548 255-536 (606)
30 3j0a_A TOLL-like receptor 5; m 99.9 3.6E-22 1.2E-26 220.2 21.8 157 175-344 24-187 (844)
31 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-23 4.4E-28 204.1 8.0 253 202-550 50-306 (313)
32 1o6v_A Internalin A; bacterial 99.9 3.9E-22 1.3E-26 205.2 19.2 297 175-530 90-393 (466)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-22 7.7E-27 212.1 17.7 144 177-343 33-181 (562)
34 3j0a_A TOLL-like receptor 5; m 99.9 4.4E-22 1.5E-26 219.5 20.0 168 182-368 11-184 (844)
35 4fcg_A Uncharacterized protein 99.9 9.5E-23 3.3E-27 199.2 12.6 222 201-521 80-311 (328)
36 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-22 4.1E-27 197.3 12.4 253 175-529 50-309 (313)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-21 7.5E-26 198.1 22.2 159 175-367 42-200 (457)
38 1ziw_A TOLL-like receptor 3; i 99.9 6.4E-22 2.2E-26 213.8 17.3 254 180-456 9-283 (680)
39 2ft3_A Biglycan; proteoglycan, 99.9 1E-21 3.6E-26 192.7 17.1 292 176-547 34-332 (332)
40 4g8a_A TOLL-like receptor 4; l 99.9 6.9E-22 2.4E-26 211.9 16.6 146 175-335 52-201 (635)
41 2id5_A Lingo-1, leucine rich r 99.9 6.1E-22 2.1E-26 204.6 15.4 291 175-523 32-332 (477)
42 2a5y_B CED-4; apoptosis; HET: 99.9 9E-23 3.1E-27 213.1 6.4 142 2-155 318-473 (549)
43 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-21 1.2E-25 196.5 17.9 305 174-553 63-392 (457)
44 1xku_A Decorin; proteoglycan, 99.9 2.4E-21 8.3E-26 189.9 14.3 126 202-341 52-181 (330)
45 2z80_A TOLL-like receptor 2, v 99.8 2.7E-21 9.1E-26 191.5 10.2 271 182-548 38-314 (353)
46 1xku_A Decorin; proteoglycan, 99.8 6.1E-20 2.1E-24 180.0 18.0 265 202-547 31-305 (330)
47 3zyi_A Leucine-rich repeat-con 99.8 9.9E-20 3.4E-24 186.5 18.5 90 439-547 212-302 (452)
48 3zyj_A Leucine-rich repeat-con 99.8 1.2E-19 4E-24 185.3 18.6 90 439-547 201-291 (440)
49 2ft3_A Biglycan; proteoglycan, 99.8 6.8E-20 2.3E-24 179.7 16.2 275 175-522 54-331 (332)
50 1jl5_A Outer protein YOPM; leu 99.8 7.3E-20 2.5E-24 186.6 16.0 301 175-548 91-409 (454)
51 2z66_A Variable lymphocyte rec 99.8 5.4E-20 1.9E-24 178.3 12.3 104 202-317 28-136 (306)
52 1jl5_A Outer protein YOPM; leu 99.8 4.9E-20 1.7E-24 187.9 11.9 223 175-456 11-248 (454)
53 4g8a_A TOLL-like receptor 4; l 99.8 3.7E-19 1.2E-23 190.7 19.3 152 187-356 43-198 (635)
54 3o53_A Protein LRIM1, AGAP0063 99.8 4.2E-21 1.4E-25 186.9 2.5 249 198-528 30-279 (317)
55 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-19 1.5E-23 186.6 17.5 259 175-551 40-300 (622)
56 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-19 9.5E-24 174.0 10.9 262 204-549 12-276 (317)
57 3oja_A Leucine-rich immune mol 99.8 5.7E-20 1.9E-24 189.3 5.5 137 188-343 20-156 (487)
58 2z80_A TOLL-like receptor 2, v 99.8 7.4E-20 2.5E-24 181.1 5.0 256 175-492 52-312 (353)
59 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-19 1.3E-23 170.5 7.7 130 201-341 31-163 (285)
60 1ozn_A Reticulon 4 receptor; N 99.8 3.9E-18 1.3E-22 163.4 14.6 82 228-317 31-115 (285)
61 3g06_A SSPH2 (leucine-rich rep 99.8 1E-17 3.6E-22 176.0 18.0 237 175-524 61-297 (622)
62 1wwl_A Monocyte differentiatio 99.8 1.4E-19 4.9E-24 175.6 2.9 245 201-547 42-308 (312)
63 3zyj_A Leucine-rich repeat-con 99.7 8.6E-18 2.9E-22 171.4 15.2 147 178-342 46-196 (440)
64 3oja_A Leucine-rich immune mol 99.7 2.8E-18 9.4E-23 176.7 11.1 242 221-543 22-270 (487)
65 3zyi_A Leucine-rich repeat-con 99.7 9E-18 3.1E-22 171.9 14.3 147 178-342 57-207 (452)
66 2z66_A Variable lymphocyte rec 99.7 9.9E-18 3.4E-22 162.3 11.8 228 175-456 28-259 (306)
67 1wwl_A Monocyte differentiatio 99.7 8.6E-19 2.9E-23 170.1 3.1 223 204-522 65-307 (312)
68 1p9a_G Platelet glycoprotein I 99.7 7.6E-17 2.6E-21 154.3 14.7 97 226-335 7-104 (290)
69 2xwt_C Thyrotropin receptor; s 99.7 6.6E-17 2.2E-21 150.4 12.4 211 248-548 23-239 (239)
70 1h6u_A Internalin H; cell adhe 99.7 7.1E-17 2.4E-21 156.1 12.9 100 201-317 40-139 (308)
71 3ogk_B Coronatine-insensitive 99.7 1.1E-18 3.9E-23 185.3 -1.4 318 201-546 163-524 (592)
72 1z7x_W Ribonuclease inhibitor; 99.7 4.8E-19 1.6E-23 182.1 -5.1 159 175-343 3-182 (461)
73 2o6q_A Variable lymphocyte rec 99.7 5.9E-16 2E-20 146.7 16.5 76 231-317 18-95 (270)
74 2ast_B S-phase kinase-associat 99.7 5.1E-18 1.7E-22 166.7 2.3 237 229-532 70-314 (336)
75 2z62_A TOLL-like receptor 4, v 99.7 1.5E-16 5.1E-21 151.5 12.3 202 202-456 28-235 (276)
76 2z62_A TOLL-like receptor 4, v 99.7 2.8E-16 9.5E-21 149.6 13.8 79 230-317 29-110 (276)
77 3rfs_A Internalin B, repeat mo 99.7 3E-16 1E-20 148.9 12.3 102 201-317 40-143 (272)
78 3sfz_A APAF-1, apoptotic pepti 99.7 9.6E-17 3.3E-21 185.4 10.0 137 1-153 308-452 (1249)
79 1h6u_A Internalin H; cell adhe 99.6 1E-15 3.5E-20 147.9 13.7 191 175-416 41-231 (308)
80 4ay9_X Follicle-stimulating ho 99.6 4.1E-16 1.4E-20 153.7 11.1 82 229-317 30-114 (350)
81 3rfs_A Internalin B, repeat mo 99.6 1.5E-15 5.1E-20 144.1 14.5 106 225-342 37-144 (272)
82 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-18 4.4E-23 179.0 -7.4 331 201-547 2-410 (461)
83 2o6q_A Variable lymphocyte rec 99.6 6.3E-16 2.2E-20 146.6 11.8 144 177-339 18-165 (270)
84 1vt4_I APAF-1 related killer D 99.6 3E-16 1E-20 167.1 8.6 115 8-147 321-437 (1221)
85 1p9a_G Platelet glycoprotein I 99.6 2E-15 6.9E-20 144.4 11.1 197 175-415 10-208 (290)
86 2xwt_C Thyrotropin receptor; s 99.6 1.5E-15 5.1E-20 141.2 9.4 125 203-340 32-165 (239)
87 3ogk_B Coronatine-insensitive 99.6 1.1E-16 3.8E-21 169.9 0.5 298 204-547 140-475 (592)
88 2p1m_B Transport inhibitor res 99.6 9.5E-17 3.2E-21 170.5 -0.6 132 175-317 105-245 (594)
89 4glp_A Monocyte differentiatio 99.6 1.6E-15 5.4E-20 147.0 7.4 109 201-318 63-180 (310)
90 2ca6_A RAN GTPase-activating p 99.6 4.3E-17 1.5E-21 163.3 -3.9 92 220-319 23-134 (386)
91 2ast_B S-phase kinase-associat 99.6 1.8E-15 6.2E-20 148.5 6.6 203 176-412 71-282 (336)
92 1h6t_A Internalin B; cell adhe 99.5 2.4E-14 8.3E-19 137.0 11.4 170 201-416 45-214 (291)
93 4glp_A Monocyte differentiatio 99.5 4.5E-14 1.5E-18 136.7 13.0 131 201-343 90-236 (310)
94 2ca6_A RAN GTPase-activating p 99.5 2.7E-16 9.2E-21 157.5 -3.3 113 198-318 28-170 (386)
95 1z6t_A APAF-1, apoptotic prote 99.5 1.4E-14 4.9E-19 153.4 9.6 133 2-150 309-449 (591)
96 4ay9_X Follicle-stimulating ho 99.5 1.8E-14 6.2E-19 141.9 9.4 56 397-454 197-255 (350)
97 3goz_A Leucine-rich repeat-con 99.5 1.2E-15 3.9E-20 151.3 0.4 69 445-522 225-295 (362)
98 4ezg_A Putative uncharacterize 99.5 6.5E-14 2.2E-18 125.8 11.7 148 175-343 44-193 (197)
99 3cvr_A Invasion plasmid antige 99.5 4.7E-14 1.6E-18 146.4 12.1 190 230-530 60-249 (571)
100 1h6t_A Internalin B; cell adhe 99.5 6.4E-14 2.2E-18 134.0 11.7 165 175-368 46-210 (291)
101 3m19_A Variable lymphocyte rec 99.5 6.2E-14 2.1E-18 131.2 11.3 150 203-368 36-189 (251)
102 3m19_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 131.9 9.2 154 175-344 35-192 (251)
103 4ezg_A Putative uncharacterize 99.5 4.2E-14 1.4E-18 127.0 8.0 126 201-341 43-169 (197)
104 3e6j_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 129.2 8.1 145 180-343 24-171 (229)
105 2v9t_B SLIT homolog 2 protein 99.5 5.9E-14 2E-18 128.3 7.6 143 182-343 18-164 (220)
106 2p1m_B Transport inhibitor res 99.5 2E-15 6.8E-20 160.3 -3.1 63 299-366 281-346 (594)
107 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.7E-18 126.6 8.6 150 179-344 15-166 (220)
108 1m9s_A Internalin B; cell inva 99.5 1.8E-13 6.2E-18 143.7 11.1 143 175-341 43-185 (605)
109 2ell_A Acidic leucine-rich nuc 99.4 1.3E-13 4.3E-18 120.5 7.9 131 201-344 23-160 (168)
110 1xeu_A Internalin C; cellular 99.4 4E-13 1.4E-17 126.4 11.1 146 175-345 41-186 (263)
111 1m9s_A Internalin B; cell inva 99.4 2.7E-13 9.1E-18 142.4 10.3 148 174-345 64-211 (605)
112 4b8c_D Glucose-repressible alc 99.4 2.6E-13 9E-18 146.1 10.2 156 175-344 173-329 (727)
113 2je0_A Acidic leucine-rich nuc 99.4 1E-13 3.6E-18 118.4 5.6 125 201-338 16-147 (149)
114 1xeu_A Internalin C; cellular 99.4 8.1E-13 2.8E-17 124.3 11.1 150 225-416 37-186 (263)
115 2o6s_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 122.5 7.9 148 175-344 28-178 (208)
116 2ell_A Acidic leucine-rich nuc 99.4 4.4E-13 1.5E-17 117.0 7.7 133 175-326 24-165 (168)
117 2o6s_A Variable lymphocyte rec 99.4 6.8E-13 2.3E-17 120.3 8.8 143 182-343 14-160 (208)
118 3goz_A Leucine-rich repeat-con 99.4 1.8E-13 6.1E-18 135.5 5.3 247 201-492 21-295 (362)
119 2xot_A Amphoterin-induced prot 99.4 2.9E-13 1E-17 133.8 5.7 130 203-344 40-176 (361)
120 1a9n_A U2A', U2A'; complex (nu 99.4 9.5E-13 3.3E-17 115.8 8.1 128 200-343 17-152 (176)
121 2v9t_B SLIT homolog 2 protein 99.3 4.4E-12 1.5E-16 115.8 10.4 129 175-318 32-163 (220)
122 3e6j_A Variable lymphocyte rec 99.3 6E-12 2.1E-16 115.7 11.4 130 175-319 40-171 (229)
123 3cvr_A Invasion plasmid antige 99.3 2.6E-12 8.9E-17 133.4 9.7 134 176-344 60-193 (571)
124 2je0_A Acidic leucine-rich nuc 99.3 1.7E-12 5.8E-17 110.8 5.8 124 175-316 17-149 (149)
125 4b8c_D Glucose-repressible alc 99.3 5.6E-13 1.9E-17 143.5 3.3 117 198-327 220-336 (727)
126 2xot_A Amphoterin-induced prot 99.3 1.4E-12 4.8E-17 128.9 5.3 154 175-343 39-201 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.3 4.9E-12 1.7E-16 115.5 8.5 131 175-319 32-165 (220)
128 1dce_A Protein (RAB geranylger 99.3 4.9E-12 1.7E-16 132.0 9.1 154 198-363 405-565 (567)
129 1dce_A Protein (RAB geranylger 99.3 6.1E-12 2.1E-16 131.2 8.5 137 219-369 399-544 (567)
130 2wfh_A SLIT homolog 2 protein 99.2 1.5E-11 5.3E-16 109.6 8.9 103 229-341 31-136 (193)
131 1w8a_A SLIT protein; signaling 99.2 1E-11 3.5E-16 110.8 7.6 103 230-341 30-136 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.2 7.7E-12 2.6E-16 109.9 6.1 126 175-318 19-151 (176)
133 1w8a_A SLIT protein; signaling 99.2 1.3E-11 4.4E-16 110.1 7.5 125 178-319 11-138 (192)
134 1ds9_A Outer arm dynein; leuci 99.2 4.9E-13 1.7E-17 120.1 -3.2 102 201-317 47-150 (198)
135 1ds9_A Outer arm dynein; leuci 99.2 9.5E-14 3.3E-18 124.8 -8.0 113 221-345 40-154 (198)
136 2o6r_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 106.0 8.3 122 179-318 11-135 (177)
137 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4.2E-15 103.7 8.7 123 232-369 13-137 (193)
138 3sb4_A Hypothetical leucine ri 99.1 2.1E-10 7.3E-15 111.7 8.6 80 441-541 246-327 (329)
139 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7E-15 100.3 7.4 105 205-325 15-122 (174)
140 2r9u_A Variable lymphocyte rec 99.0 3.2E-10 1.1E-14 99.1 7.6 101 232-344 15-118 (174)
141 3g39_A Variable lymphocyte rec 99.0 3E-10 1E-14 98.9 7.2 99 204-317 11-112 (170)
142 2o6r_A Variable lymphocyte rec 99.0 6.2E-10 2.1E-14 97.8 9.0 124 204-343 9-136 (177)
143 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 94.8 8.0 102 231-344 11-115 (170)
144 4fdw_A Leucine rich hypothetic 98.8 1.4E-07 4.9E-12 93.8 17.8 243 224-545 131-380 (401)
145 2ifg_A High affinity nerve gro 98.7 9.7E-09 3.3E-13 100.7 6.8 97 207-317 13-113 (347)
146 3sb4_A Hypothetical leucine ri 98.7 2.7E-08 9.2E-13 96.7 7.9 277 175-518 25-328 (329)
147 2ifg_A High affinity nerve gro 98.6 6.2E-08 2.1E-12 94.9 6.9 91 247-341 20-113 (347)
148 4fdw_A Leucine rich hypothetic 98.5 2.4E-06 8.2E-11 85.0 17.8 236 227-546 111-356 (401)
149 3un9_A NLR family member X1; l 98.4 2.3E-08 7.8E-13 98.6 -1.8 159 175-345 72-253 (372)
150 3un9_A NLR family member X1; l 98.4 6.3E-08 2.2E-12 95.4 1.3 159 201-369 71-250 (372)
151 4fs7_A Uncharacterized protein 98.3 6.1E-06 2.1E-10 82.1 14.0 83 441-545 293-376 (394)
152 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 7.8E-11 79.2 5.1 79 226-313 167-257 (267)
153 3e4g_A ATP synthase subunit S, 98.1 4.8E-07 1.6E-11 77.5 -0.0 88 445-550 61-154 (176)
154 2ra8_A Uncharacterized protein 98.0 2E-06 6.7E-11 84.0 2.9 16 399-414 304-319 (362)
155 1io0_A Tropomodulin; LRR prote 98.0 9.2E-06 3.1E-10 71.3 6.9 114 195-317 29-161 (185)
156 3e4g_A ATP synthase subunit S, 97.9 7.2E-06 2.5E-10 70.2 4.8 67 255-321 81-153 (176)
157 2ra8_A Uncharacterized protein 97.9 2.5E-06 8.6E-11 83.2 1.5 161 198-368 135-317 (362)
158 1io0_A Tropomodulin; LRR prote 97.9 5.4E-06 1.8E-10 72.8 2.9 91 218-317 25-133 (185)
159 4fs7_A Uncharacterized protein 97.8 8.8E-05 3E-09 73.7 11.8 234 222-540 155-393 (394)
160 4gt6_A Cell surface protein; l 97.8 0.00057 2E-08 67.8 16.0 104 198-316 59-169 (394)
161 3rw6_A Nuclear RNA export fact 97.6 7.5E-05 2.6E-09 69.0 6.8 83 200-291 168-259 (267)
162 4gt6_A Cell surface protein; l 97.2 0.013 4.4E-07 57.9 17.8 84 441-546 284-368 (394)
163 4h09_A Hypothetical leucine ri 96.9 0.013 4.4E-07 57.5 14.5 11 400-410 238-248 (379)
164 3rfe_A Platelet glycoprotein I 95.2 0.023 8E-07 45.9 5.0 48 244-294 16-66 (130)
165 4h09_A Hypothetical leucine ri 94.6 0.083 2.8E-06 51.6 8.4 58 255-315 259-318 (379)
166 1pgv_A TMD-1, tropomodulin TMD 93.5 0.12 4.1E-06 44.9 6.0 111 199-317 38-167 (197)
167 3rfe_A Platelet glycoprotein I 93.3 0.087 3E-06 42.5 4.7 53 262-318 11-66 (130)
168 1pgv_A TMD-1, tropomodulin TMD 92.0 0.29 1E-05 42.4 6.4 90 219-317 31-136 (197)
169 2qen_A Walker-type ATPase; unk 86.7 2.7 9.2E-05 39.9 9.6 119 2-146 227-348 (350)
170 2fna_A Conserved hypothetical 85.3 5 0.00017 38.1 10.7 118 4-145 233-355 (357)
171 1w5s_A Origin recognition comp 79.7 2.3 7.8E-05 41.7 5.8 114 2-126 241-372 (412)
172 1hqc_A RUVB; extended AAA-ATPa 64.0 5.1 0.00018 37.6 4.0 107 3-124 193-324 (324)
173 2vda_B Maltoporin; sugar trans 43.2 14 0.00049 19.1 1.7 19 9-27 7-25 (28)
174 2v1u_A Cell division control p 35.4 1.5E+02 0.0051 27.8 9.4 110 2-126 227-352 (387)
175 2qby_B CDC6 homolog 3, cell di 28.5 3.7E+02 0.013 25.1 11.1 109 3-127 224-341 (384)
176 1fnn_A CDC6P, cell division co 21.4 3.8E+02 0.013 25.0 9.4 88 57-149 281-383 (389)
No 1
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.5e-26 Score=248.22 Aligned_cols=340 Identities=14% Similarity=0.167 Sum_probs=234.2
Q ss_pred ccCceEEEEEEecCCCC------------------cccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEE
Q 039861 173 EEKKIRHLMLIVRGRAS------------------VPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRAL 234 (557)
Q Consensus 173 ~~~~~r~l~l~~~~~~~------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L 234 (557)
....++.|.+..+.... +|..+. |.++++|+.|++++|. ..+.+|..|.++++|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCCEE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hccCCCCCEEECcCCC---CCccChHHHhCCCCCCEE
Confidence 34678999999888776 554432 1149999999999987 445578889999999999
Q ss_pred EeccccCCCCcCc-cc--ccchhhhccc-------CCCeeecccCCcccccch--hhhccCcCcEeecCCccccccCccc
Q 039861 235 NLKVRKPWSSVND-IK--EIPTNIEKLL-------HLKYLNLKSQNKIEKLPE--TLCELHNLERLNVDDCENLRELPRG 302 (557)
Q Consensus 235 ~L~~~~~~~~~~~-l~--~lp~~~~~l~-------~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~ 302 (557)
+| ++|. +. .+|..++++. +|++|++++|. +..+|. .++++++|++|++++|. +..+| .
T Consensus 521 ~L-------s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~ 590 (876)
T 4ecn_A 521 NI-------ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A 590 (876)
T ss_dssp EC-------TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C
T ss_pred EC-------cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-h
Confidence 99 7776 76 4888888887 99999999998 779998 89999999999999987 66888 8
Q ss_pred ccCCCCCcEeecCCCCCCCcccccccCccc-ccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChh----HH
Q 039861 303 IGKLRKLMYIDNDDTDSLRYLPVGIGELIR-LRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAG----EA 377 (557)
Q Consensus 303 i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~----~~ 377 (557)
++.+++|++|++++| .+..+|..++.+++ |+.|++..+.... .+..+..+ ...+|+.+.+++..-..... ..
T Consensus 591 ~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~-~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTT-CSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCCCCc-Cchhhhcc-ccCCCCEEECcCCcCCCccccchhhh
Confidence 899999999999998 45688988999998 9999888776552 22222111 11225556665442211110 00
Q ss_pred HHhhccCCCCCchHH----hhhhc-CCCCCCccEEEEeecCCcCCCCCcc-------------cccCccccCccccCCCC
Q 039861 378 RRAELEKKKNLDEDE----RLLEA-LGPPPNLKKLQIYDYRGRRNVVPKN-------------WIMDLSLFRCRNCEHLP 439 (557)
Q Consensus 378 ~~~~l~~l~~l~~~~----~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~-------------~l~~L~l~~~~~~~~l~ 439 (557)
......+++.+.... .++.. +..+++|+.|+|++|.+.. +|+. .++.|++++|. +..+|
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp 744 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLS 744 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCC
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccEEECCCCC-Cccch
Confidence 000111222222111 11222 2356788888888887764 5443 34446777774 33666
Q ss_pred C-CC--CCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccee
Q 039861 440 P-LG--KLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSL 516 (557)
Q Consensus 440 ~-l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 516 (557)
. +. .+++|+.|+|++|. +..++.. +..+++|+.|++++++.+..-...+.+|..+..+++|+.|
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred HHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 4 44 78889999988864 3333332 4568899999998754222211134567788999999999
Q ss_pred eeccCccccCCCCCcCCCCCcceEEEecCCCcc
Q 039861 517 SIQSCPKLKALPDHLLQKSTLQKLEIWGCPILK 549 (557)
Q Consensus 517 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 549 (557)
++++|. ++.+|..+. ++|+.|++++|+...
T Consensus 812 ~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 812 QIGSND-IRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp ECCSSC-CCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred ECCCCC-CCccCHhhc--CCCCEEECCCCCCCc
Confidence 999995 599998754 699999999998643
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.2e-25 Score=239.90 Aligned_cols=339 Identities=14% Similarity=0.185 Sum_probs=210.4
Q ss_pred CceEEEEEEecCCCC------------------cccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEe
Q 039861 175 KKIRHLMLIVRGRAS------------------VPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNL 236 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L 236 (557)
..++.+.+..+.... +|..+. +.++++|++|++.+|. ..+.+|..|.++++|++|++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~--~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK--WDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEEEC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhh--hcccCCCCEEEecCCc---CCccChHHHhcCCCCCEEEC
Confidence 567777777777665 444433 0037777888877776 33446666777777777777
Q ss_pred ccccCCCCcCc-cc--ccchhhhcc------cCCCeeecccCCcccccch--hhhccCcCcEeecCCccccccCcccccC
Q 039861 237 KVRKPWSSVND-IK--EIPTNIEKL------LHLKYLNLKSQNKIEKLPE--TLCELHNLERLNVDDCENLRELPRGIGK 305 (557)
Q Consensus 237 ~~~~~~~~~~~-l~--~lp~~~~~l------~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~i~~ 305 (557)
++|. +. .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|.....+| .++.
T Consensus 281 -------s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 281 -------ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp -------TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred -------cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 6665 65 377777766 777777777777 667777 77777777777777766333777 6777
Q ss_pred CCCCcEeecCCCCCCCcccccccCccc-ccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHH-----
Q 039861 306 LRKLMYIDNDDTDSLRYLPVGIGELIR-LRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARR----- 379 (557)
Q Consensus 306 L~~L~~L~l~~~~~l~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~----- 379 (557)
+++|++|++++| .+..+|..++.+++ |++|++.++.... .+..+.. ..+++|+.+++++..-.........
T Consensus 352 l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcc-cchhhhh-cccCccCEEECcCCcCCCcchhhhcccccc
Confidence 777777777777 45577777777777 7777776665442 1111111 1122444455544322110000000
Q ss_pred -hhccCCCCCchHH----hhhh-cCCCCCCccEEEEeecCCcCCCCCccc-------------ccCccccCccccCCCCC
Q 039861 380 -AELEKKKNLDEDE----RLLE-ALGPPPNLKKLQIYDYRGRRNVVPKNW-------------IMDLSLFRCRNCEHLPP 440 (557)
Q Consensus 380 -~~l~~l~~l~~~~----~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~-------------l~~L~l~~~~~~~~l~~ 440 (557)
..+.+++.+.... .++. .+..+++|+.|++++|.+.. +|+.. ++.|++++|... .+|.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 0111111111111 1111 12346788888888888775 54433 444677776543 5664
Q ss_pred -CC--CCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceee
Q 039861 441 -LG--KLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLS 517 (557)
Q Consensus 441 -l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 517 (557)
+. .+++|++|+++++. ++.+|.. +..+++|+.|+++++..+..-...+.+|..+..+++|+.|+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp GGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred hhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 44 88889999988865 3334332 45688999999966442211111344577888999999999
Q ss_pred eccCccccCCCCCcCCCCCcceEEEecCCCcc
Q 039861 518 IQSCPKLKALPDHLLQKSTLQKLEIWGCPILK 549 (557)
Q Consensus 518 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 549 (557)
+++|. ++.+|..+. ++|+.|++++|+...
T Consensus 573 Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 573 IGSND-IRKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSSC-CCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCc-CCccCHhHh--CcCCEEECcCCCCcc
Confidence 99995 699998755 799999999997553
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.2e-24 Score=232.16 Aligned_cols=339 Identities=15% Similarity=0.191 Sum_probs=237.8
Q ss_pred ccCceEEEEEEecCCC-CcccccccccCCCCcceEEEeccCC-ccchhh-hhHHHHhcC------CceeEEEeccccCCC
Q 039861 173 EEKKIRHLMLIVRGRA-SVPISIWDNVKGLRGLRSFLVKSDE-YSWSSE-VLPQLFDKL------TCLRALNLKVRKPWS 243 (557)
Q Consensus 173 ~~~~~r~l~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~p~~~~~l------~~L~~L~L~~~~~~~ 243 (557)
....++.+.+..+... .+|.. +.++++|++|++++|. +. + .+|..++.+ ++|++|++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~~l~---~~~lp~~~~~L~~~~~l~~L~~L~L------- 312 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGIS---GEQLKDDWQALADAPVGEKIQIIYI------- 312 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEECTTCTTSC---HHHHHHHHHHHHHSGGGGTCCEEEC-------
T ss_pred ccCCCCEEEecCCcCCccChHH----HhcCCCCCEEECcCCCCCc---cccchHHHHhhhccccCCCCCEEEC-------
Confidence 4578999999988754 34443 4459999999999996 42 2 468778776 99999999
Q ss_pred CcCcccccch--hhhcccCCCeeecccCCccc-ccchhhhccCcCcEeecCCccccccCcccccCCCC-CcEeecCCCCC
Q 039861 244 SVNDIKEIPT--NIEKLLHLKYLNLKSQNKIE-KLPETLCELHNLERLNVDDCENLRELPRGIGKLRK-LMYIDNDDTDS 319 (557)
Q Consensus 244 ~~~~l~~lp~--~~~~l~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~-L~~L~l~~~~~ 319 (557)
++|.+..+|. .++++++|++|++++|. +. .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++| .
T Consensus 313 ~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~ 388 (636)
T 4eco_A 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-K 388 (636)
T ss_dssp CSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSS-C
T ss_pred CCCcCCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCC-c
Confidence 8899999998 99999999999999999 76 999 79999999999999987 7799999999999 999999999 5
Q ss_pred CCcccccccCcc--cccccCceEecCccCCccCccccc----cCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHh
Q 039861 320 LRYLPVGIGELI--RLRRVTKLVVGGGYDRACSLGSLK----KLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDER 393 (557)
Q Consensus 320 l~~~p~~i~~L~--~L~~L~~~~~~~~~~~~~~l~~L~----~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~ 393 (557)
+..+|..++.+. +|+.|++..+......+..+.... .+.+|+.|.+++..-. .........+..++.+.....
T Consensus 389 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence 668998887765 899999888776553333333110 4456667777664332 333333334555555543222
Q ss_pred hhhcC------------CCCCCccEEEEeecCCcCCCCCccc-------ccCccccCccccCCCCC-CCCCCCcCeeeec
Q 039861 394 LLEAL------------GPPPNLKKLQIYDYRGRRNVVPKNW-------IMDLSLFRCRNCEHLPP-LGKLPSLEYLEIE 453 (557)
Q Consensus 394 ~~~~l------------~~~~~L~~L~l~~~~~~~~~~~~~~-------l~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~ 453 (557)
.+..+ ..+++|+.|++++|.+.. +|..+ ++.|++++|.... +|. +..+++|++|+++
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB--CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCCc--cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 22111 112289999999998875 64443 3446888886554 665 8899999999997
Q ss_pred cccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCC-----
Q 039861 454 GMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALP----- 528 (557)
Q Consensus 454 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp----- 528 (557)
++..+.. +.+.+.. +..+..+++|+.|++++|. +..+ |..+. ++|+.|++++|+. ..++
T Consensus 545 ~N~~ls~--N~l~~~~----p~~l~~l~~L~~L~Ls~N~-l~~i------p~~~~--~~L~~L~Ls~N~l-~~~~~~~~~ 608 (636)
T 4eco_A 545 NQRDAQG--NRTLREW----PEGITLCPSLTQLQIGSND-IRKV------NEKIT--PNISVLDIKDNPN-ISIDLSYVC 608 (636)
T ss_dssp SCBCTTC--CBCCCCC----CTTGGGCSSCCEEECCSSC-CCBC------CSCCC--TTCCEEECCSCTT-CEEECTTTH
T ss_pred CCccccc--CcccccC----hHHHhcCCCCCEEECCCCc-CCcc------CHhHh--CcCCEEECcCCCC-ccccHHhcc
Confidence 6431100 1111111 1225678999999999965 3444 44443 8999999999964 3322
Q ss_pred -C---CcCCCCCcceEEEecCCCcc
Q 039861 529 -D---HLLQKSTLQKLEIWGCPILK 549 (557)
Q Consensus 529 -~---~~~~l~~L~~L~l~~c~~l~ 549 (557)
. ....+...+..++.+|+.|+
T Consensus 609 ~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 609 PYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp HHHHTTCCEEECCTTSEEESCGGGC
T ss_pred hhhhcccceeecCCccccCCCcccc
Confidence 1 11122334667899999874
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=3e-25 Score=240.93 Aligned_cols=308 Identities=12% Similarity=0.127 Sum_probs=182.8
Q ss_pred hHHHHhcCCceeEEEeccccCCCCcCcccc------------------cchhhh--cccCCCeeecccCCcccccchhhh
Q 039861 221 LPQLFDKLTCLRALNLKVRKPWSSVNDIKE------------------IPTNIE--KLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 221 ~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~------------------lp~~~~--~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+|..|+++++|++|+| ++|.+.. +|..++ ++++|++|+|++|.....+|..++
T Consensus 440 IP~~l~~L~~L~~L~L-------s~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYF-------ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEE-------ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred hhHHHhcCCCCCEEEC-------cCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 5667888888888888 7777776 888877 888888888888876677888888
Q ss_pred ccCcCcEeecCCccccc--cCcccccCCC-------CCcEeecCCCCCCCcccc--cccCcccccccCceEecCccCCcc
Q 039861 281 ELHNLERLNVDDCENLR--ELPRGIGKLR-------KLMYIDNDDTDSLRYLPV--GIGELIRLRRVTKLVVGGGYDRAC 349 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~ 349 (557)
++++|++|++++|..+. .+|..+++++ +|++|++++| .+..+|. .++.+++|+.|++..+....
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~---- 587 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH---- 587 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCB----
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCccc----
Confidence 88888888888876343 5777666655 8888888888 4557887 78888888888877665542
Q ss_pred CccccccCCcCCCceecCCCCCCChhHHHHhhccC-CCCCchHH----hhhhcCCCCC--CccEEEEeecCCcCCC--CC
Q 039861 350 SLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEK-KKNLDEDE----RLLEALGPPP--NLKKLQIYDYRGRRNV--VP 420 (557)
Q Consensus 350 ~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~-l~~l~~~~----~~~~~l~~~~--~L~~L~l~~~~~~~~~--~~ 420 (557)
++.+..+++|+.|.+++..-. ..... ...+.. ++.+.... .++..+...+ +|+.|++++|.+.... ++
T Consensus 588 -lp~~~~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 588 -LEAFGTNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp -CCCCCTTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred -chhhcCCCcceEEECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 225556666667666654322 11110 112222 33222111 2223333332 3777777777654410 10
Q ss_pred -------cccccCccccCccccCCCCC--CCCCCCcCeeeeccccCceEecccccCCCC--------C-----------C
Q 039861 421 -------KNWIMDLSLFRCRNCEHLPP--LGKLPSLEYLEIEGMQSVKRVGNEFLGVES--------D-----------T 472 (557)
Q Consensus 421 -------~~~l~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~--------~-----------~ 472 (557)
...++.|++++|... .+|. +..+++|+.|+|+++. +..++........ . .
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 001333455554322 3443 2345566666665542 3333332211000 0 0
Q ss_pred CCcccc--cccccccccccccccccccccccccccccccCCccceeeecc------CccccCCCCCcCCCCCcceEEEec
Q 039861 473 DGSSVI--AFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQS------CPKLKALPDHLLQKSTLQKLEIWG 544 (557)
Q Consensus 473 ~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~ 544 (557)
.+..+. .+++|+.|++++|. ++. +|..+..+++|+.|++++ |.....+|..+.++++|+.|++++
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~-L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNC-FSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred chHHhhhccCCCcCEEEeCCCC-CCc------cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 011122 56677777777643 222 455677777888887765 444556777777777888888888
Q ss_pred CCCcccccc
Q 039861 545 CPILKERVS 553 (557)
Q Consensus 545 c~~l~~~~~ 553 (557)
|.. +.++.
T Consensus 816 N~L-~~Ip~ 823 (876)
T 4ecn_A 816 NDI-RKVDE 823 (876)
T ss_dssp SCC-CBCCS
T ss_pred CCC-CccCH
Confidence 765 55544
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.8e-25 Score=216.58 Aligned_cols=298 Identities=17% Similarity=0.214 Sum_probs=221.1
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+.++....++. +..+++|++|++++|.+. . +|. +..+++|++|++ +++.+..+| .
T Consensus 44 ~~L~~L~l~~~~i~~~~~-----~~~~~~L~~L~l~~n~i~---~-~~~-~~~l~~L~~L~L-------~~n~i~~~~-~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-----IEYLTNLEYLNLNGNQIT---D-ISP-LSNLVKLTNLYI-------GTNKITDIS-A 105 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-----GGGCTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEEC-------CSSCCCCCG-G
T ss_pred ccccEEEEeCCccccchh-----hhhcCCccEEEccCCccc---c-chh-hhcCCcCCEEEc-------cCCcccCch-H
Confidence 678888888877766543 334899999999998743 3 333 888999999999 888888876 5
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
++.+++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|++|++++| .+..++. ++.+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCS
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCC
Confidence 8899999999999998 888877 88999999999999876666654 889999999999998 4555554 78888888
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCC
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRG 414 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~ 414 (557)
+|++..+.... +..+..++.|+.+.+.+...... ..+..+++|++|++++|.+
T Consensus 181 ~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 181 SLSLNYNQIED-----ISPLASLTSLHYFTAYVNQITDI----------------------TPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EEECTTSCCCC-----CGGGGGCTTCCEEECCSSCCCCC----------------------GGGGGCTTCCEEECCSSCC
T ss_pred EEEccCCcccc-----cccccCCCccceeecccCCCCCC----------------------chhhcCCcCCEEEccCCcc
Confidence 88887665443 33366777777777766432211 1145567888888888876
Q ss_pred cCCCCCc----ccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccc
Q 039861 415 RRNVVPK----NWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRN 490 (557)
Q Consensus 415 ~~~~~~~----~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 490 (557)
.. +++ ..++.|++.+|. +..++.+..+++|++|++++|. ++.++ .+..+++|+.|++++
T Consensus 234 ~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 234 TD--LSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNN 296 (347)
T ss_dssp CC--CGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCS
T ss_pred CC--CcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCEEECcC
Confidence 65 322 124446777763 4456778899999999999874 43332 145789999999999
Q ss_pred cccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCC
Q 039861 491 MEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 491 ~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 547 (557)
|. +... .+..+..+++|+.|++++|+ ++.++. +..+++|++|++++|+.
T Consensus 297 n~-l~~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 297 NQ-LGNE-----DMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp SC-CCGG-----GHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred Cc-CCCc-----ChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 75 3322 24567889999999999996 676665 56789999999999973
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.8e-25 Score=241.44 Aligned_cols=269 Identities=18% Similarity=0.170 Sum_probs=168.7
Q ss_pred CceEEEEEEecCCC-CcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc-ccc
Q 039861 175 KKIRHLMLIVRGRA-SVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-EIP 252 (557)
Q Consensus 175 ~~~r~l~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-~lp 252 (557)
..++.+.+..+... .+|..+.. .+++|++|++.+|. +...+|..|..+++|++|++ ++|.+. .+|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~---~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L-------~~n~l~~~ip 335 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSG---ACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLAL-------SSNNFSGELP 335 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCT---TCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEEC-------CSSEEEEECC
T ss_pred CCCCEEECcCCccCCccCHHHHh---hcCcCCEEECcCCc---CCCccchHHhcCCCccEEEC-------CCCcccCcCC
Confidence 67788887776554 34444332 14788888888886 33446667788888888888 777776 677
Q ss_pred hh-hhcccCCCeeecccCCcccccchhhhccC-cCcEeecCCccccccCcccccC--CCCCcEeecCCCCCCCccccccc
Q 039861 253 TN-IEKLLHLKYLNLKSQNKIEKLPETLCELH-NLERLNVDDCENLRELPRGIGK--LRKLMYIDNDDTDSLRYLPVGIG 328 (557)
Q Consensus 253 ~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~-~L~~L~l~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~l~~~p~~i~ 328 (557)
.. ++++++|++|++++|.....+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 415 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence 55 77888888888888873337777777776 7788887777655556666655 66777777777754446666777
Q ss_pred CcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCch-----HHhhhhcCCCCCC
Q 039861 329 ELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDE-----DERLLEALGPPPN 403 (557)
Q Consensus 329 ~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~-----~~~~~~~l~~~~~ 403 (557)
.+++|+.|++..+...... ...+..+++|+.+.+.+......... ....+..++.+.. ....+..+..+++
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GCTTCCEEECCSSEEESCC---CGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred cCCCCCEEECcCCcccCcc---cHHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 7777777776665544322 22344455555666554432211111 1112223332221 1233455667788
Q ss_pred ccEEEEeecCCcCCCCCcccc------cCccccCccccCCCCC-CCCCCCcCeeeeccccCceEec
Q 039861 404 LKKLQIYDYRGRRNVVPKNWI------MDLSLFRCRNCEHLPP-LGKLPSLEYLEIEGMQSVKRVG 462 (557)
Q Consensus 404 L~~L~l~~~~~~~~~~~~~~l------~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~ 462 (557)
|+.|++++|.+.. ..|.++ +.|++.+|...+.+|. ++.+++|++|++++|.-...+|
T Consensus 492 L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 492 LNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 8888888888765 235443 3457777776656664 7888888888888765333333
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=6.5e-25 Score=239.57 Aligned_cols=342 Identities=18% Similarity=0.140 Sum_probs=207.5
Q ss_pred CceEEEEEEecCCC-CcccccccccCCCCcceEEEeccCCccchhhhhHH-HHhcCCceeEEEeccccCCCCcCccc-cc
Q 039861 175 KKIRHLMLIVRGRA-SVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQ-LFDKLTCLRALNLKVRKPWSSVNDIK-EI 251 (557)
Q Consensus 175 ~~~r~l~l~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~~~~l~-~l 251 (557)
..++.+.+..+... .+|..+ .++++|++|++.+|.+ .+.+|. .+..+++|++|++ ++|.+. .+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~L~~n~l---~~~ip~~~l~~l~~L~~L~L-------s~n~l~~~~ 359 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFF----GSCSLLESLALSSNNF---SGELPMDTLLKMRGLKVLDL-------SFNEFSGEL 359 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGG----GGCTTCCEEECCSSEE---EEECCHHHHTTCTTCCEEEC-------CSSEEEECC
T ss_pred CcCCEEECcCCcCCCccchHH----hcCCCccEEECCCCcc---cCcCCHHHHhcCCCCCEEeC-------cCCccCccc
Confidence 66888888776654 223333 3488888888888863 322443 3778888888888 666665 56
Q ss_pred chhhhccc-CCCeeeccc--------------------------CCcccccchhhhccCcCcEeecCCccccccCccccc
Q 039861 252 PTNIEKLL-HLKYLNLKS--------------------------QNKIEKLPETLCELHNLERLNVDDCENLRELPRGIG 304 (557)
Q Consensus 252 p~~~~~l~-~L~~L~L~~--------------------------~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~ 304 (557)
|..++++. +|++|++++ |.....+|..++++++|++|++++|.....+|..++
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 66665554 444444444 442224555666666666666666654445666666
Q ss_pred CCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccC
Q 039861 305 KLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEK 384 (557)
Q Consensus 305 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 384 (557)
++++|++|++++|.....+|..++.+++|++|++..+..... ....+..+++|+.+++.+..-...... ....+.+
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~ 515 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE---IPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLEN 515 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC---CCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTT
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc---CCHHHhcCCCCCEEEccCCccCCcCCh-HHhcCCC
Confidence 666666666666654446666666666666666665554431 223345555666666655433211111 1122333
Q ss_pred CCCCc-----hHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccC-----cccc------------------------
Q 039861 385 KKNLD-----EDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMD-----LSLF------------------------ 430 (557)
Q Consensus 385 l~~l~-----~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~-----L~l~------------------------ 430 (557)
++.+. .....+..+..+++|+.|++++|.+... +|..+... +.+.
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB-CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc-CChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 33332 1123345566677777777777765531 32222111 0000
Q ss_pred ----------------------CccccCCCC-CCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccc
Q 039861 431 ----------------------RCRNCEHLP-PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLE 487 (557)
Q Consensus 431 ----------------------~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 487 (557)
.+.....+| .++.+++|+.|+++++.--..+|.. ++.+++|+.|+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~------------l~~l~~L~~L~ 662 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE------------IGSMPYLFILN 662 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG------------GGGCTTCCEEE
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH------------HhccccCCEEe
Confidence 000011122 3667888999999886533233332 56789999999
Q ss_pred ccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCcccccc
Q 039861 488 FRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPILKERVS 553 (557)
Q Consensus 488 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~ 553 (557)
++++.. .+.+|..++.+++|+.|++++|.....+|..+.++++|++|++++|+..+.++.
T Consensus 663 Ls~N~l------~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 663 LGHNDI------SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCSSCC------CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CcCCcc------CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999654 345688999999999999999976679999988999999999999987766653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.4e-24 Score=231.39 Aligned_cols=345 Identities=16% Similarity=0.111 Sum_probs=212.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-ch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~ 253 (557)
..++.+.+..+....++.. .|.++++|++|++++|. +....|..|.++++|++|+| ++|.+..+ |.
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~L-------s~n~l~~~~p~ 98 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLIL-------TGNPIQSFSPG 98 (606)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEEC-------TTCCCCCCCTT
T ss_pred CCcCEEECCCCCcCEeChh---hccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeEC-------CCCcccccChh
Confidence 7789999988887765543 34559999999999997 44555777899999999999 88888887 78
Q ss_pred hhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccc-cCcccccCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLR-ELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
.++++.+|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 89999999999999998 77776 679999999999999987433 5788999999999999999954444455677776
Q ss_pred ccc----ccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCC--------------------
Q 039861 332 RLR----RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKN-------------------- 387 (557)
Q Consensus 332 ~L~----~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~-------------------- 387 (557)
+|+ +|++..+.........+. ..+|+.+.+.+..............+..++.
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~----~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~ 253 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQ----GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTT----TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGG
T ss_pred ccccccceeeccCCCcceeCccccc----CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChH
Confidence 665 355444433321111111 1134444444322110000000111111000
Q ss_pred -----------------CchHHhhhhcCCCCCCccEEEEeecCCcCCCCC----cccccCccccCccccCCCCCCCCCCC
Q 039861 388 -----------------LDEDERLLEALGPPPNLKKLQIYDYRGRRNVVP----KNWIMDLSLFRCRNCEHLPPLGKLPS 446 (557)
Q Consensus 388 -----------------l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~l~~L~l~~~~~~~~l~~l~~l~~ 446 (557)
..........+..+++|+.|+++++.... +| ...++.|++.+|.. +.+|.+ .+++
T Consensus 254 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~ 329 (606)
T 3vq2_A 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPF 329 (606)
T ss_dssp GGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC--CCCCCTTCCCSEEEEESCCC-SSCCCC-CCSS
T ss_pred HhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh--hhhccccccCCEEEcccccC-cccccC-CCCc
Confidence 00000111224556677777777766544 32 01234456666655 566666 6677
Q ss_pred cCeeeeccccCceEecccccCCCCCC--------------CCcccccccccccccccccccccccccccccccccccCCc
Q 039861 447 LEYLEIEGMQSVKRVGNEFLGVESDT--------------DGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPR 512 (557)
Q Consensus 447 L~~L~l~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 512 (557)
|++|+++++..+..++.. ...... ....+..+++|+.|+++++. +. .+|..+..+++
T Consensus 330 L~~L~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~------~~~~~~~~l~~ 400 (606)
T 3vq2_A 330 LKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AI------IMSANFMGLEE 400 (606)
T ss_dssp CCEEEEESCSSCEECCCC--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EE------EECCCCTTCTT
T ss_pred cceeeccCCcCccchhhc--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cc------cchhhccCCCC
Confidence 777777665433322100 000000 00113355667777776643 22 23456778888
Q ss_pred cceeeeccCccccCCC-CCcCCCCCcceEEEecCCCccc
Q 039861 513 LSSLSIQSCPKLKALP-DHLLQKSTLQKLEIWGCPILKE 550 (557)
Q Consensus 513 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~ 550 (557)
|+.|++++|......| ..+..+++|++|++++|.....
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 9999998886444444 3666788999999998875543
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-24 Score=215.65 Aligned_cols=300 Identities=15% Similarity=0.130 Sum_probs=175.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-h
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-T 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~ 253 (557)
..++.+.+..+....+|..++. ++++|++|++.+|. +....+..|..+++|++|++ +++.+..+| .
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~---~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLD---SFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYM-------GFNAIRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHH---HCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEEC-------CSSCCCCCCTT
T ss_pred CCceEEEecCCchhhCChhHhc---ccccCcEEECCCCc---ccccChhhccCCCCcCEEEC-------CCCCCCcCCHH
Confidence 4556666666555555544322 25666666666665 22333444666666666666 555565554 3
Q ss_pred hhhcccCCCeeecccCCcccccchh-hhccCcCcEeecCCccccccC-cccccCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPET-LCELHNLERLNVDDCENLREL-PRGIGKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
.++++++|++|++++|. +..+|.. ++++++|++|++++|. +..+ |..++.+++|++|++++| .++.+ .++.++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~l~ 186 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIP 186 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBC--CGGGCT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCcc--cccccc
Confidence 35666666666666665 6666544 3566666666666655 3333 334566666666666666 33333 244455
Q ss_pred cccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEee
Q 039861 332 RLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~ 411 (557)
+|+.|++..+.. ..+.....|+.+.+.+.... . . ....+++|+.|++++
T Consensus 187 ~L~~L~l~~n~l--------~~~~~~~~L~~L~l~~n~l~-~--------------------~--~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 187 SLFHANVSYNLL--------STLAIPIAVEELDASHNSIN-V--------------------V--RGPVNVELTILKLQH 235 (390)
T ss_dssp TCSEEECCSSCC--------SEEECCSSCSEEECCSSCCC-E--------------------E--ECCCCSSCCEEECCS
T ss_pred ccceeecccccc--------cccCCCCcceEEECCCCeee-e--------------------c--cccccccccEEECCC
Confidence 555555443322 12222334444444432110 0 0 112245788888877
Q ss_pred cCCcCCCCCc----ccccCccccCccccCCCC-CCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccc
Q 039861 412 YRGRRNVVPK----NWIMDLSLFRCRNCEHLP-PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKL 486 (557)
Q Consensus 412 ~~~~~~~~~~----~~l~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 486 (557)
|.+.. .+. ..++.|++++|...+..| .+..+++|++|+++++. ++.++.. ...+++|+.|
T Consensus 236 n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------~~~l~~L~~L 300 (390)
T 3o6n_A 236 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLKVL 300 (390)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------------SSCCTTCCEE
T ss_pred CCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc------------cCCCCCCCEE
Confidence 76654 210 113445676665433333 37788899999998864 5544432 2358899999
Q ss_pred cccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 487 EFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 487 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
++++|. ++. +|..+..+++|+.|++++|+ ++.+| +..+++|+.|++++|+--
T Consensus 301 ~L~~n~-l~~------~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 301 DLSHNH-LLH------VERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSC-CCC------CGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCc-cee------cCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCcc
Confidence 999964 443 35567789999999999995 77776 456889999999999743
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6e-24 Score=219.67 Aligned_cols=292 Identities=17% Similarity=0.208 Sum_probs=177.1
Q ss_pred CcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcccCCCeeecccCCcccccch-hh
Q 039861 202 RGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKLLHLKYLNLKSQNKIEKLPE-TL 279 (557)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~-~~ 279 (557)
+.+++|++++|. +....|..|.++++|++|+| ++|.+..+ |..++++.+|++|+|++|. +..+|. .+
T Consensus 32 ~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNR---IKTLNQDEFASFPHLEELEL-------NENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEEC-------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred CCCcEEECCCCc---cceECHhHccCCCCCCEEEC-------CCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 356666666665 33333445666666666666 56666555 4556666666666666666 666653 35
Q ss_pred hccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCc
Q 039861 280 CELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNL 359 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 359 (557)
.++++|++|++++|......|..+.++++|++|++++|......|..++.+++|++|++..+..... ....+..+++
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~ 177 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI---PTEALSHLHG 177 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC---CHHHHTTCTT
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc---ChhHhcccCC
Confidence 6666666666666653333445566666666666666633333344566666666666655543321 1122444555
Q ss_pred CCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcc-----cccCccccCccc
Q 039861 360 LRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKN-----WIMDLSLFRCRN 434 (557)
Q Consensus 360 L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~l~~L~l~~~~~ 434 (557)
|+.+.+.+..... .....+..+++|+.|++++|..... +++. .++.|++.+|.
T Consensus 178 L~~L~l~~n~i~~--------------------~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~- 235 (477)
T 2id5_A 178 LIVLRLRHLNINA--------------------IRDYSFKRLYRLKVLEISHWPYLDT-MTPNCLYGLNLTSLSITHCN- 235 (477)
T ss_dssp CCEEEEESCCCCE--------------------ECTTCSCSCTTCCEEEEECCTTCCE-ECTTTTTTCCCSEEEEESSC-
T ss_pred CcEEeCCCCcCcE--------------------eChhhcccCcccceeeCCCCccccc-cCcccccCccccEEECcCCc-
Confidence 5555555432110 0112345556677777766554331 1111 24445666553
Q ss_pred cCCCC--CCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCc
Q 039861 435 CEHLP--PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPR 512 (557)
Q Consensus 435 ~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 512 (557)
+..+| .+..+++|++|+++++. ++.++... +..+++|+.|+++++ .++.+. |..+..+++
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~ 297 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-----------LHELLRLQEIQLVGG-QLAVVE-----PYAFRGLNY 297 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-----------CTTCTTCCEEECCSS-CCSEEC-----TTTBTTCTT
T ss_pred ccccCHHHhcCccccCeeECCCCc-CCccChhh-----------ccccccCCEEECCCC-ccceEC-----HHHhcCccc
Confidence 33455 27789999999999865 55554322 346889999999985 444432 467888999
Q ss_pred cceeeeccCccccCCCC-CcCCCCCcceEEEecCCCc
Q 039861 513 LSSLSIQSCPKLKALPD-HLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 513 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l 548 (557)
|+.|++++| .++.+|. .+..+++|+.|++++|+-.
T Consensus 298 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 999999999 5777776 4567899999999999853
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.4e-24 Score=208.70 Aligned_cols=233 Identities=22% Similarity=0.288 Sum_probs=172.9
Q ss_pred cCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCC
Q 039861 227 KLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKL 306 (557)
Q Consensus 227 ~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L 306 (557)
...+++.|+| +++.+..+|..++++.+|++|++++|. +..+|..++++++|++|++++|. +..+|..++++
T Consensus 79 ~~~~l~~L~L-------~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALEL-------RSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEE-------ESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEc-------cCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 3578899999 888888999889999999999999988 77899889999999999999977 66889889999
Q ss_pred CCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCC
Q 039861 307 RKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKK 386 (557)
Q Consensus 307 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~ 386 (557)
++|++|++++|..++.+|..++... ....+..+++|+.|.+.+..-.
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~------------------~~~~~~~l~~L~~L~L~~n~l~--------------- 196 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD------------------ASGEHQGLVNLQSLRLEWTGIR--------------- 196 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-------------------CCCEEESTTCCEEEEEEECCC---------------
T ss_pred cCCCEEECCCCCCccccChhHhhcc------------------chhhhccCCCCCEEECcCCCcC---------------
Confidence 9999999999878888887665410 0011233333444444332110
Q ss_pred CCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEeccccc
Q 039861 387 NLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFL 466 (557)
Q Consensus 387 ~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 466 (557)
.++..+..+++|++|++++|.+.. +|+ .++.+++|++|++++|.....++..
T Consensus 197 ------~lp~~l~~l~~L~~L~L~~N~l~~--l~~------------------~l~~l~~L~~L~Ls~n~~~~~~p~~-- 248 (328)
T 4fcg_A 197 ------SLPASIANLQNLKSLKIRNSPLSA--LGP------------------AIHHLPKLEELDLRGCTALRNYPPI-- 248 (328)
T ss_dssp ------CCCGGGGGCTTCCEEEEESSCCCC--CCG------------------GGGGCTTCCEEECTTCTTCCBCCCC--
T ss_pred ------cchHhhcCCCCCCEEEccCCCCCc--Cch------------------hhccCCCCCEEECcCCcchhhhHHH--
Confidence 112334556788888888877554 311 2567788999999887766555443
Q ss_pred CCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecC
Q 039861 467 GVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGC 545 (557)
Q Consensus 467 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 545 (557)
+..+++|+.|++++|+.+.. +|..+..+++|+.|++++|+.++.+|..+.++++|+.+++..+
T Consensus 249 ----------~~~l~~L~~L~L~~n~~~~~------~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 249 ----------FGGRAPLKRLILKDCSNLLT------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ----------TTCCCCCCEEECTTCTTCCB------CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ----------hcCCCCCCEEECCCCCchhh------cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 34688999999998876444 3567888999999999999999999998888999999988765
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=7e-24 Score=221.72 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=106.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+.+..++.. .+.++++|++|++++|. +....|..|.++++|++|+| ++|.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L-------s~N~l~~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS---DILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDL-------SHNKLVKISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH---HHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEEC-------CSSCCCEEECC
T ss_pred ccccEEECCCCcccccChh---hccccccccEEecCCCc---cCCcChHHhhcccCCCEEec-------CCCceeecCcc
Confidence 7899999998888766543 23448999999999998 44556778999999999999 88889999876
Q ss_pred hhcccCCCeeecccCCcccc--cchhhhccCcCcEeecCCccccccCcccccCCCCC--cEeecCCCCC--CCccccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEK--LPETLCELHNLERLNVDDCENLRELPRGIGKLRKL--MYIDNDDTDS--LRYLPVGIG 328 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--l~~~p~~i~ 328 (557)
.+.+|++|++++|. +.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..++
T Consensus 88 --~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp --CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred --ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 89999999999998 665 67889999999999999977 443 356777777 8888888754 344444443
Q ss_pred C
Q 039861 329 E 329 (557)
Q Consensus 329 ~ 329 (557)
.
T Consensus 162 ~ 162 (520)
T 2z7x_B 162 D 162 (520)
T ss_dssp T
T ss_pred c
Confidence 3
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.3e-24 Score=214.04 Aligned_cols=281 Identities=18% Similarity=0.150 Sum_probs=219.3
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-hhhcccCCCeeecccCCcccccc-hh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLNLKSQNKIEKLP-ET 278 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~ 278 (557)
+++++.+.+.++. +....+..|..+++|++|++ +++.+..+|. .++.+++|++|++++|. +..+| ..
T Consensus 44 l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L-------~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 44 LNNQKIVTFKNST---MRKLPAALLDSFRQVELLNL-------NDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GCCCSEEEEESCE---ESEECTHHHHHCCCCSEEEC-------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCceEEEecCCc---hhhCChhHhcccccCcEEEC-------CCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 7899999999987 44445566899999999999 8888988874 89999999999999999 77775 56
Q ss_pred hhccCcCcEeecCCccccccCcccc-cCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccC
Q 039861 279 LCELHNLERLNVDDCENLRELPRGI-GKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKL 357 (557)
Q Consensus 279 ~~~l~~L~~L~l~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L 357 (557)
++++++|++|++++|. +..+|..+ +++++|++|++++|......|..++.+++|++|++..+..... .+..+
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l 185 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLI 185 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------CGGGC
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------ccccc
Confidence 8999999999999987 88888774 8999999999999954444455689999999999887765541 24455
Q ss_pred CcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcc---cccCccccCccc
Q 039861 358 NLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKN---WIMDLSLFRCRN 434 (557)
Q Consensus 358 ~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~l~~L~l~~~~~ 434 (557)
+.|+.+.+.... +..+..+++|+.|++++|.+.. ++.. .++.|++.+|.
T Consensus 186 ~~L~~L~l~~n~-------------------------l~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~L~~L~l~~n~- 237 (390)
T 3o6n_A 186 PSLFHANVSYNL-------------------------LSTLAIPIAVEELDASHNSINV--VRGPVNVELTILKLQHNN- 237 (390)
T ss_dssp TTCSEEECCSSC-------------------------CSEEECCSSCSEEECCSSCCCE--EECCCCSSCCEEECCSSC-
T ss_pred cccceeeccccc-------------------------ccccCCCCcceEEECCCCeeee--ccccccccccEEECCCCC-
Confidence 666666665431 1233456789999999998765 3333 35567888775
Q ss_pred cCCCCCCCCCCCcCeeeeccccCceEe-cccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcc
Q 039861 435 CEHLPPLGKLPSLEYLEIEGMQSVKRV-GNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRL 513 (557)
Q Consensus 435 ~~~l~~l~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L 513 (557)
+...+.+..+++|++|+++++. ++.+ +.. +..+++|+.|+++++ .++.+ |.....+++|
T Consensus 238 l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~------------~~~l~~L~~L~L~~n-~l~~~------~~~~~~l~~L 297 (390)
T 3o6n_A 238 LTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP------------FVKMQRLERLYISNN-RLVAL------NLYGQPIPTL 297 (390)
T ss_dssp CCCCGGGGGCTTCSEEECCSSC-CCEEESGG------------GTTCSSCCEEECCSS-CCCEE------ECSSSCCTTC
T ss_pred CcccHHHcCCCCccEEECCCCc-CCCcChhH------------ccccccCCEEECCCC-cCccc------CcccCCCCCC
Confidence 3445778899999999999975 4333 322 346899999999995 44443 4466789999
Q ss_pred ceeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 514 SSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 514 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
+.|++++| .++.+|..+..+++|++|++++|+..
T Consensus 298 ~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 298 KVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred CEEECCCC-cceecCccccccCcCCEEECCCCccc
Confidence 99999999 58889887777899999999999743
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=5.7e-24 Score=218.56 Aligned_cols=342 Identities=15% Similarity=0.117 Sum_probs=231.1
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-ch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~ 253 (557)
..++.+.+..+.+..++. ..+.++++|++|++++|... ....|..|.++++|++|+| ++|.+..+ |.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~L-------s~n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE---TSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKL-------DYNQFLQLETG 97 (455)
T ss_dssp TTCCEEECCSSCCCEECT---TTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEEC-------TTCTTCEECTT
T ss_pred CccCEEEecCCccCcCCh---hHhccCccccEEECcCCccc--ceECcccccccccCCEEeC-------CCCccCccChh
Confidence 789999999888776533 23455999999999999732 1334667899999999999 88888876 77
Q ss_pred hhhcccCCCeeecccCCcccc-cchh--hhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCcccccccC
Q 039861 254 NIEKLLHLKYLNLKSQNKIEK-LPET--LCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYLPVGIGE 329 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~ 329 (557)
.++++.+|++|++++|. +.. +|.. ++.+++|++|++++|......|.. ++++++|++|++++|......|..++.
T Consensus 98 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 89999999999999998 654 4544 889999999999998844444655 789999999999999655555666666
Q ss_pred c--ccccccCceEecCccCCccCc-----cccccCCcCCCceecCCCCCCChhHHHHhh--ccCCCCCchHHh-------
Q 039861 330 L--IRLRRVTKLVVGGGYDRACSL-----GSLKKLNLLRECTIRGLGGVSDAGEARRAE--LEKKKNLDEDER------- 393 (557)
Q Consensus 330 L--~~L~~L~~~~~~~~~~~~~~l-----~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~--l~~l~~l~~~~~------- 393 (557)
+ .+|+.|++..+.........+ ..+..+++|+.+++++.............. ...++.+.....
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 5 566666665554433211111 122344556667776543221111111110 011111110000
Q ss_pred --------hhhcC--CCCCCccEEEEeecCCcCCCCCccc------ccCccccCccccCCCC-CCCCCCCcCeeeecccc
Q 039861 394 --------LLEAL--GPPPNLKKLQIYDYRGRRNVVPKNW------IMDLSLFRCRNCEHLP-PLGKLPSLEYLEIEGMQ 456 (557)
Q Consensus 394 --------~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~------l~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~ 456 (557)
....+ ...++|+.|++++|.+.. .++.+ ++.|++.+|...+..| .++.+++|++|++++|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred chhhhccCcccccccccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 00000 023689999999988765 33443 4446787776544444 48899999999999875
Q ss_pred CceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCC-CcCCCC
Q 039861 457 SVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD-HLLQKS 535 (557)
Q Consensus 457 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~ 535 (557)
+..++... +..+++|+.|++++|. ++.+ .|..+..+++|++|++++| .++.+|. .+..++
T Consensus 335 -l~~~~~~~-----------~~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 335 -LGSIDSRM-----------FENLDKLEVLDLSYNH-IRAL-----GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLT 395 (455)
T ss_dssp -CCEECGGG-----------GTTCTTCCEEECCSSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred -cCCcChhH-----------hcCcccCCEEECCCCc-cccc-----ChhhccccccccEEECCCC-ccccCCHhHhccCC
Confidence 44443222 3468999999999964 4433 2567889999999999999 5777776 446799
Q ss_pred CcceEEEecCCCccc
Q 039861 536 TLQKLEIWGCPILKE 550 (557)
Q Consensus 536 ~L~~L~l~~c~~l~~ 550 (557)
+|++|++++|+-..+
T Consensus 396 ~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 396 SLQKIWLHTNPWDCS 410 (455)
T ss_dssp TCCEEECCSSCBCCC
T ss_pred cccEEEccCCCcccC
Confidence 999999999986533
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=229.83 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=106.3
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-h
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-T 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~ 253 (557)
..++.+.+..+....++.. .|.++++|++|++++|. +....|..|.++++|++|+| ++|.+..+| .
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L-------~~n~l~~~~~~ 94 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLIL-------TGNPIQSLALG 94 (570)
T ss_dssp SSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEEC-------TTCCCCEECTT
T ss_pred ccccEEEccCCccCccChh---HhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeC-------cCCcCCccCHh
Confidence 5688888888877655433 34458889999998887 34445666888888999998 788887776 6
Q ss_pred hhhcccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccc-cCcccccCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLR-ELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
.++.+.+|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 78888888888888887 777764 58888888888888876332 3688888888888888888843333334455554
Q ss_pred cc
Q 039861 332 RL 333 (557)
Q Consensus 332 ~L 333 (557)
+|
T Consensus 174 ~L 175 (570)
T 2z63_A 174 QM 175 (570)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.3e-23 Score=224.00 Aligned_cols=153 Identities=14% Similarity=0.050 Sum_probs=115.9
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-ch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~ 253 (557)
..++.+.+..+.+..+++. .|.++++|++|++++|. +....|..|.++++|++|+| ++|.+..+ |.
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~ 99 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVL-------TANPLIFMAET 99 (606)
T ss_dssp TTCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEEC-------TTCCCSEECTT
T ss_pred CcCcEEEccCCccCcCChh---HhccCccceEEECCCCc---cceeChhhccCccccCeeeC-------CCCcccccChh
Confidence 5788898888887765432 34558999999999987 44556777899999999999 88888766 67
Q ss_pred hhhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
.++++++|++|++++|. +..+ |..++++++|++|++++|. +..++ +.+..+++|++|++++|......|..++.++
T Consensus 100 ~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 88999999999999998 7776 5678899999999999977 55542 3344589999999998844333355677778
Q ss_pred ccc--ccCceEec
Q 039861 332 RLR--RVTKLVVG 342 (557)
Q Consensus 332 ~L~--~L~~~~~~ 342 (557)
+|+ +|++..+.
T Consensus 178 ~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 178 QATNLSLNLNGND 190 (606)
T ss_dssp TCCSEEEECTTCC
T ss_pred ccceeEEecCCCc
Confidence 777 45444443
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3.9e-24 Score=228.04 Aligned_cols=106 Identities=23% Similarity=0.294 Sum_probs=79.2
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-h
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-T 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~ 253 (557)
..++.+.+..+....+++. .|.++++|++|++++|. +....|..|+++++|++|++ ++|.+..+| .
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L-------~~n~l~~~~~~ 122 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDK---AWHGLHHLSNLILTGNP---IQSFSPGSFSGLTSLENLVA-------VETKLASLESF 122 (606)
T ss_dssp TTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCC---CCCCCTTSSTTCTTCCEEEC-------TTSCCCCSSSS
T ss_pred ccCcEEeCCCCcccccCHH---HhhchhhcCEeECCCCc---ccccChhhcCCcccCCEEEc-------cCCcccccccc
Confidence 6788888877766655432 33458888888888887 44445777888888888888 777777766 5
Q ss_pred hhhcccCCCeeecccCCccc--ccchhhhccCcCcEeecCCcc
Q 039861 254 NIEKLLHLKYLNLKSQNKIE--KLPETLCELHNLERLNVDDCE 294 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~ 294 (557)
.++++.+|++|++++|. +. .+|..++++++|++|++++|.
T Consensus 123 ~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc
Confidence 68888888888888887 55 467778888888888888876
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7.9e-24 Score=224.47 Aligned_cols=298 Identities=15% Similarity=0.145 Sum_probs=158.8
Q ss_pred ceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-h
Q 039861 176 KIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-N 254 (557)
Q Consensus 176 ~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~ 254 (557)
.++.+.+..+....+|..++. ++++|++|++.+|. +....|..|..+++|++|+| ++|.+..+|. .
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~---~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~ 118 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLD---SFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYM-------GFNAIRYLPPHV 118 (597)
T ss_dssp CCSEEEESSCEESEECTHHHH---HCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEEC-------CSSCCCCCCTTT
T ss_pred CceEEEeeCCCCCCcCHHHHc---cCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEEC-------CCCcCCCCCHHH
Confidence 344444444444444433222 14455555555554 22223334455555555555 4444444432 2
Q ss_pred hhcccCCCeeecccCCcccccchh-hhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPET-LCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL 333 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 333 (557)
++++++|++|+|++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++++| .+..++ ++.+++|
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L 194 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSL 194 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTC
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhh
Confidence 3555555555555554 4444433 345555555555554422222233455555555555555 233322 3334444
Q ss_pred cccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecC
Q 039861 334 RRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYR 413 (557)
Q Consensus 334 ~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~ 413 (557)
+.|++..+. +..+.....|+.+.+++.... ... ...+++|+.|++++|.
T Consensus 195 ~~L~l~~n~--------l~~l~~~~~L~~L~ls~n~l~---------------------~~~--~~~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 195 FHANVSYNL--------LSTLAIPIAVEELDASHNSIN---------------------VVR--GPVNVELTILKLQHNN 243 (597)
T ss_dssp SEEECCSSC--------CSEEECCTTCSEEECCSSCCC---------------------EEE--CSCCSCCCEEECCSSC
T ss_pred hhhhcccCc--------cccccCCchhheeeccCCccc---------------------ccc--cccCCCCCEEECCCCC
Confidence 444433222 112222233444444332110 000 1123578888888777
Q ss_pred CcCCCCCccc------ccCccccCccccCCCC-CCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccc
Q 039861 414 GRRNVVPKNW------IMDLSLFRCRNCEHLP-PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKL 486 (557)
Q Consensus 414 ~~~~~~~~~~------l~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 486 (557)
+.. +.+ +..|++++|......| .++.+++|+.|+|+++. +..++.. ...+|+|+.|
T Consensus 244 l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~~L 306 (597)
T 3oja_B 244 LTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLKVL 306 (597)
T ss_dssp CCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------SSCCTTCCEE
T ss_pred CCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------cccCCCCcEE
Confidence 655 222 3445777765444434 37788899999998854 5444432 2358899999
Q ss_pred cccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 487 EFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 487 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
++++|. +. .+|..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+--
T Consensus 307 ~Ls~N~-l~------~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 307 DLSHNH-LL------HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECCSSC-CC------CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCC-CC------ccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCC
Confidence 999964 33 345677889999999999995 67676 455789999999999843
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=5.7e-24 Score=223.99 Aligned_cols=346 Identities=19% Similarity=0.228 Sum_probs=209.1
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++. ..+.++++|++|++++|. +....|..|.++++|++|++ ++|.+..+|..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDL-------SDNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEEC-------TTSCCCSCCHH
T ss_pred CCccEEECcCCccCccCh---hhhhcCCcccEEECCCCC---cCccChhhccccccCCEEEC-------CCCccCccCHH
Confidence 578888888877665433 234458888888888887 34445667888888888888 77888877654
Q ss_pred -hhcccCCCeeecccCCcccc--cchhhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCcccccccCc
Q 039861 255 -IEKLLHLKYLNLKSQNKIEK--LPETLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYLPVGIGEL 330 (557)
Q Consensus 255 -~~~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L 330 (557)
++++++|++|++++|. +.. .|..++++++|++|++++|..+..+| ..++++++|++|++++|......|..++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 8888888888888887 664 45678888888888888877667776 467888888888888885544566666666
Q ss_pred ccccccCceEec------------------------CccCC--c-cC---ccc----------------------cccCC
Q 039861 331 IRLRRVTKLVVG------------------------GGYDR--A-CS---LGS----------------------LKKLN 358 (557)
Q Consensus 331 ~~L~~L~~~~~~------------------------~~~~~--~-~~---l~~----------------------L~~L~ 358 (557)
++|++|++..+. ..... + .. ... +..++
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 555555443332 21100 0 00 000 00011
Q ss_pred cCCC-----------------------------------------------------------ceecCCCCCCChhHHHH
Q 039861 359 LLRE-----------------------------------------------------------CTIRGLGGVSDAGEARR 379 (557)
Q Consensus 359 ~L~~-----------------------------------------------------------l~i~~~~~~~~~~~~~~ 379 (557)
.|+. +.+.+.. +........
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~ 330 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFS 330 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHH
Confidence 1111 1111110 111111111
Q ss_pred hhccCCCCCch-----HHhh---hhcCCCCCCccEEEEeecCCcCCCCCc--------ccccCccccCccccCCCCC-CC
Q 039861 380 AELEKKKNLDE-----DERL---LEALGPPPNLKKLQIYDYRGRRNVVPK--------NWIMDLSLFRCRNCEHLPP-LG 442 (557)
Q Consensus 380 ~~l~~l~~l~~-----~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~--------~~l~~L~l~~~~~~~~l~~-l~ 442 (557)
..+.+++.+.. .... ...++.+++|+.|++++|.+.. +++ ..++.|++++|. +..+|. +.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQ 407 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCC-CccCChhhc
Confidence 23334433331 1111 2235667788888888887654 221 124456777774 345664 67
Q ss_pred CCCCcCeeeeccccCceEecccccCC------CCCCCCcccccccccccccccccccccccccccccccccccCCcccee
Q 039861 443 KLPSLEYLEIEGMQSVKRVGNEFLGV------ESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSL 516 (557)
Q Consensus 443 ~l~~L~~L~l~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 516 (557)
.+++|++|++++|. ++.++...... ...........+++|+.|++++| .++.+ |. ...+++|+.|
T Consensus 408 ~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i------p~-~~~l~~L~~L 478 (549)
T 2z81_A 408 WPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL------PD-ASLFPVLLVM 478 (549)
T ss_dssp CCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC------CC-GGGCTTCCEE
T ss_pred ccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC------CC-cccCccCCEE
Confidence 78888888888765 33332211000 00000011236788888888885 44433 43 3568999999
Q ss_pred eeccCccccCCCC-CcCCCCCcceEEEecCCCc
Q 039861 517 SIQSCPKLKALPD-HLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 517 ~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l 548 (557)
++++|. ++.+|. .+..+++|+.|++++|+-.
T Consensus 479 ~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 479 KISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp ECCSSC-CCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred ecCCCc-cCCcCHHHHhcCcccCEEEecCCCcc
Confidence 999995 665554 4677899999999999854
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=3.7e-23 Score=218.13 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=93.7
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+.+..++.. .+.++++|++|++++|. +....|..|.++++|++|+| ++|.++.+|..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L-------s~N~l~~lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP---DISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDV-------SHNRLQNISCC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG---GTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEEC-------TTSCCCEECSC
T ss_pred CCcCEEECCCCCccccChh---hhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEEC-------CCCcCCccCcc
Confidence 6788888888877766543 33458888888888887 44445677888888888888 88888888876
Q ss_pred hhcccCCCeeecccCCcccccc--hhhhccCcCcEeecCCccccccCcccccCCCCC--cEeecCCCCC
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLP--ETLCELHNLERLNVDDCENLRELPRGIGKLRKL--MYIDNDDTDS 319 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~ 319 (557)
.+.+|++|++++|. +..+| ..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 119 --~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 --PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred --ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 78888888888888 76654 678888888888888876 433 234555555 8888877744
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=223.26 Aligned_cols=121 Identities=20% Similarity=0.261 Sum_probs=82.3
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT- 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~- 253 (557)
..++.+.+..+....++.. .|.++++|++|++++|. +....|..|.++++|++|++ +++.+..+|.
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------~~n~l~~l~~~ 118 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNP---IQSLALGAFSGLSSLQKLVA-------VETNLASLENF 118 (570)
T ss_dssp SSCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEEC-------TTSCCCCSTTC
T ss_pred CCceEEECCCCcCCccCcc---cccCchhCCEEeCcCCc---CCccCHhhhcCccccccccc-------cccccccCCCc
Confidence 5678888777766554433 34458888888888887 33444566778888888888 7777777764
Q ss_pred hhhcccCCCeeecccCCcccc--cchhhhccCcCcEeecCCccccccCcccccCCCCC
Q 039861 254 NIEKLLHLKYLNLKSQNKIEK--LPETLCELHNLERLNVDDCENLRELPRGIGKLRKL 309 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L 309 (557)
.++++.+|++|++++|. +.. +|..++++++|++|++++|......|..++.+++|
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp SCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 57788888888888877 553 67778888888888888765322223344444444
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.3e-23 Score=215.92 Aligned_cols=317 Identities=14% Similarity=0.102 Sum_probs=211.3
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc-cc-chhhhcccCCCeeecccCCccccc-ch
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-EI-PTNIEKLLHLKYLNLKSQNKIEKL-PE 277 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~ 277 (557)
.++|++|++++|. +....|..|.++++|++|++ +++.+. .+ |..++.+++|++|++++|. +..+ |.
T Consensus 29 ~~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L-------~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 97 (455)
T 3v47_A 29 PAHVNYVDLSLNS---IAELNETSFSRLQDLQFLKV-------EQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETG 97 (455)
T ss_dssp CTTCCEEECCSSC---CCEECTTTTSSCTTCCEEEC-------CCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTT
T ss_pred CCccCEEEecCCc---cCcCChhHhccCccccEEEC-------cCCcccceECcccccccccCCEEeCCCCc-cCccChh
Confidence 4789999999998 44555777999999999999 777775 55 4679999999999999999 6665 78
Q ss_pred hhhccCcCcEeecCCccccccCccc--ccCCCCCcEeecCCCCCCCccccc-ccCcccccccCceEecCccCCccCcccc
Q 039861 278 TLCELHNLERLNVDDCENLRELPRG--IGKLRKLMYIDNDDTDSLRYLPVG-IGELIRLRRVTKLVVGGGYDRACSLGSL 354 (557)
Q Consensus 278 ~~~~l~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~l~~L 354 (557)
.++++++|++|++++|.....+|.. ++.+++|++|++++|......|.. ++.+++|++|++..+......+..+..+
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 8999999999999998844445555 899999999999999544444655 7899999999998877665434444433
Q ss_pred ccCCcCCCceecCCCCCCChh----HHHHh---hccCCCCCchH-----Hhhh---hcCCCCCCccEEEEeecCCcCCCC
Q 039861 355 KKLNLLRECTIRGLGGVSDAG----EARRA---ELEKKKNLDED-----ERLL---EALGPPPNLKKLQIYDYRGRRNVV 419 (557)
Q Consensus 355 ~~L~~L~~l~i~~~~~~~~~~----~~~~~---~l~~l~~l~~~-----~~~~---~~l~~~~~L~~L~l~~~~~~~~~~ 419 (557)
.. ..|+.+.+.......... ..... .+..++.+... ...+ ......++|+.|+++++......+
T Consensus 178 ~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 178 QG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp TT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 22 234455554432211100 00000 11112111100 0111 111123566666666553322100
Q ss_pred ----------------CcccccCccccCccccCCCCC-CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccc
Q 039861 420 ----------------PKNWIMDLSLFRCRNCEHLPP-LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPK 482 (557)
Q Consensus 420 ----------------~~~~l~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 482 (557)
....++.|++.+|...+..|. ++.+++|++|+++++. +..++... +..+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~ 324 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNA-----------FWGLTH 324 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT-----------TTTCTT
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhH-----------hcCccc
Confidence 012345567777765544454 7889999999998865 43332211 346899
Q ss_pred cccccccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCC
Q 039861 483 LKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 483 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 547 (557)
|+.|++++|. +..+. |..+..+++|++|++++|......|..+..+++|++|++++|..
T Consensus 325 L~~L~Ls~N~-l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 325 LLKLNLSQNF-LGSID-----SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp CCEEECCSSC-CCEEC-----GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCc-cCCcC-----hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 9999999964 44332 45778899999999999964444477888899999999999853
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-23 Score=222.08 Aligned_cols=282 Identities=18% Similarity=0.126 Sum_probs=220.3
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccc-hh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP-ET 278 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~ 278 (557)
+.+++.+.+.++. +....+..|..+++|++|+| +++.+..+| ..++.+.+|++|+|++|. +..+| ..
T Consensus 50 l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 50 LNNQKIVTFKNST---MRKLPAALLDSFRQVELLNL-------NDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GCCCSEEEESSCE---ESEECTHHHHHCCCCSEEEC-------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CCCceEEEeeCCC---CCCcCHHHHccCCCCcEEEC-------CCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 7789999999987 44555677899999999999 888898886 489999999999999999 77776 55
Q ss_pred hhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccC
Q 039861 279 LCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKL 357 (557)
Q Consensus 279 ~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L 357 (557)
++++++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++.++..... .+..+
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~l 191 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLI 191 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC------CGGGC
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc------Chhhh
Confidence 7999999999999987 7788876 48999999999999955444555799999999999887765541 24445
Q ss_pred CcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcc---cccCccccCccc
Q 039861 358 NLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKN---WIMDLSLFRCRN 434 (557)
Q Consensus 358 ~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~l~~L~l~~~~~ 434 (557)
+.|+.+.+.+.. +..+..+++|+.|++++|.+.. +++. .+..|++.+|..
T Consensus 192 ~~L~~L~l~~n~-------------------------l~~l~~~~~L~~L~ls~n~l~~--~~~~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 192 PSLFHANVSYNL-------------------------LSTLAIPIAVEELDASHNSINV--VRGPVNVELTILKLQHNNL 244 (597)
T ss_dssp TTCSEEECCSSC-------------------------CSEEECCTTCSEEECCSSCCCE--EECSCCSCCCEEECCSSCC
T ss_pred hhhhhhhcccCc-------------------------cccccCCchhheeeccCCcccc--cccccCCCCCEEECCCCCC
Confidence 566666665431 2234456789999999998765 3222 366678888753
Q ss_pred cCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccc
Q 039861 435 CEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLS 514 (557)
Q Consensus 435 ~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~ 514 (557)
...+.++.+++|+.|+++++.--...+.. +..+++|+.|+++++ .+..+ |.....+++|+
T Consensus 245 -~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~------------~~~l~~L~~L~Ls~N-~l~~l------~~~~~~l~~L~ 304 (597)
T 3oja_B 245 -TDTAWLLNYPGLVEVDLSYNELEKIMYHP------------FVKMQRLERLYISNN-RLVAL------NLYGQPIPTLK 304 (597)
T ss_dssp -CCCGGGGGCTTCSEEECCSSCCCEEESGG------------GTTCSSCCEEECTTS-CCCEE------ECSSSCCTTCC
T ss_pred -CCChhhccCCCCCEEECCCCccCCCCHHH------------hcCccCCCEEECCCC-CCCCC------CcccccCCCCc
Confidence 44567889999999999997633333332 346899999999995 44443 45667899999
Q ss_pred eeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 515 SLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 515 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
.|++++| .+..+|..+..+++|+.|++++|+..
T Consensus 305 ~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 305 VLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp EEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred EEECCCC-CCCccCcccccCCCCCEEECCCCCCC
Confidence 9999999 57789988888999999999999754
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=217.44 Aligned_cols=144 Identities=18% Similarity=0.177 Sum_probs=119.3
Q ss_pred EEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhh
Q 039861 178 RHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIE 256 (557)
Q Consensus 178 r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~ 256 (557)
+.+.+..+....+|..+ .++|++|++++|. +....|..|.++++|++|+| ++|.+..+ |..++
T Consensus 3 ~~l~ls~n~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL------SQKTTILNISQNY---ISELWTSDILSLSKLRILII-------SHNRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCSC------CTTCSEEECCSSC---CCCCCHHHHTTCTTCCEEEC-------CSSCCCEEEGGGGT
T ss_pred ceEecCCCCcccccccc------cccccEEECCCCc---ccccChhhccccccccEEec-------CCCccCCcChHHhh
Confidence 34566666666666544 3789999999998 45556788999999999999 88999887 67899
Q ss_pred cccCCCeeecccCCcccccchhhhccCcCcEeecCCccccc-cCcccccCCCCCcEeecCCCCCCCcccccccCcccc--
Q 039861 257 KLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLR-ELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL-- 333 (557)
Q Consensus 257 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L-- 333 (557)
++++|++|++++|. +..+|.. .+++|++|++++|.... .+|..++++++|++|++++|. +.. ..++.+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L 140 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNI 140 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCE
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhcccccccee
Confidence 99999999999998 8999976 89999999999988433 367899999999999999984 433 457778888
Q ss_pred cccCceEecC
Q 039861 334 RRVTKLVVGG 343 (557)
Q Consensus 334 ~~L~~~~~~~ 343 (557)
+.|++..+..
T Consensus 141 ~~L~l~~n~l 150 (520)
T 2z7x_B 141 SKVLLVLGET 150 (520)
T ss_dssp EEEEEEECTT
T ss_pred eEEEeecccc
Confidence 9999888766
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=6.8e-23 Score=221.42 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=128.1
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT- 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~- 253 (557)
..++++.+..+....++... |.++++|++|++++|. +....|..|.++++|++|+| ++|.+..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L-------~~n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN---FTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNL-------QHNELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG---GGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEEC-------CSSCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCHHH---HhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEEC-------CCCccCccChh
Confidence 68999999998887766543 3449999999999998 45556888999999999999 8899999986
Q ss_pred hhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccc-cc--cC
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPV-GI--GE 329 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i--~~ 329 (557)
.++++.+|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|. +..++. .+ ..
T Consensus 92 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFA 169 (680)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGT
T ss_pred hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccc
Confidence 59999999999999998 77776 679999999999999988555566778999999999999994 444443 33 35
Q ss_pred cccccccCceEecCcc
Q 039861 330 LIRLRRVTKLVVGGGY 345 (557)
Q Consensus 330 L~~L~~L~~~~~~~~~ 345 (557)
+++|+.|++..+....
T Consensus 170 ~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKE 185 (680)
T ss_dssp TCEESEEECTTCCCCC
T ss_pred cccccEEECCCCcccc
Confidence 5788888887776554
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.3e-23 Score=221.32 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=119.1
Q ss_pred CCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCee
Q 039861 186 GRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYL 264 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L 264 (557)
....+|..+ .+.|++|++++|. +....|..|.++++|++|++ ++|.+..++ ..++.+++|++|
T Consensus 16 ~l~~ip~~~------~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L-------s~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 16 SFTSIPSGL------TAAMKSLDLSFNK---ITYIGHGDLRACANLQVLIL-------KSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp CCSSCCSCC------CTTCCEEECCSSC---CCEECSSTTSSCTTCCEEEC-------TTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccC------CCCccEEECcCCc---cCccChhhhhcCCcccEEEC-------CCCCcCccChhhccccccCCEE
Confidence 444556543 4689999999998 44445667999999999999 888888876 679999999999
Q ss_pred ecccCCcccccch-hhhccCcCcEeecCCccccc--cCcccccCCCCCcEeecCCCCCCCccc-ccccCcccccccCceE
Q 039861 265 NLKSQNKIEKLPE-TLCELHNLERLNVDDCENLR--ELPRGIGKLRKLMYIDNDDTDSLRYLP-VGIGELIRLRRVTKLV 340 (557)
Q Consensus 265 ~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~ 340 (557)
++++|. +..+|. .++++++|++|++++|. +. ..|..++++++|++|++++|..+..+| ..++.+++|++|++..
T Consensus 80 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 80 DLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp ECTTSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 999999 777765 59999999999999987 55 456789999999999999997677776 5799999999999998
Q ss_pred ecCcc
Q 039861 341 VGGGY 345 (557)
Q Consensus 341 ~~~~~ 345 (557)
+....
T Consensus 158 n~l~~ 162 (549)
T 2z81_A 158 LSLRN 162 (549)
T ss_dssp TTCCE
T ss_pred Ccccc
Confidence 87664
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=6.6e-23 Score=202.71 Aligned_cols=278 Identities=19% Similarity=0.247 Sum_probs=216.9
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+++|++|.+.++.... +|. +..+++|++|++ +++.+..+|. ++.+++|++|++++|. +..+|. +.
T Consensus 43 l~~L~~L~l~~~~i~~----~~~-~~~~~~L~~L~l-------~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~~ 107 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----IQG-IEYLTNLEYLNL-------NGNQITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQ 107 (347)
T ss_dssp HTTCSEEECCSSCCCC----CTT-GGGCTTCCEEEC-------CSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GT
T ss_pred cccccEEEEeCCcccc----chh-hhhcCCccEEEc-------cCCccccchh-hhcCCcCCEEEccCCc-ccCchH-Hc
Confidence 8899999999987432 344 888999999999 8888998887 9999999999999998 888874 99
Q ss_pred ccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcC
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLL 360 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 360 (557)
.+++|++|++++|. +..+|. +..+++|++|++++|.....++ .++.+++|+.|++..+.... +..+..+++|
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~L 179 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-----VTPIANLTDL 179 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-----CGGGGGCTTC
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-----chhhccCCCC
Confidence 99999999999987 777876 8999999999999997666554 48899999999887766543 2336777888
Q ss_pred CCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCc----ccccCccccCccccC
Q 039861 361 RECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPK----NWIMDLSLFRCRNCE 436 (557)
Q Consensus 361 ~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~l~~L~l~~~~~~~ 436 (557)
+.+++.+..... ...+..+++|+.|++++|.... +++ ..++.|++.+|. +.
T Consensus 180 ~~L~l~~n~l~~----------------------~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~-l~ 234 (347)
T 4fmz_A 180 YSLSLNYNQIED----------------------ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNK-IT 234 (347)
T ss_dssp SEEECTTSCCCC----------------------CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSC-CC
T ss_pred CEEEccCCcccc----------------------cccccCCCccceeecccCCCCC--CchhhcCCcCCEEEccCCc-cC
Confidence 888887653211 1124567899999999987765 322 235567888875 34
Q ss_pred CCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccee
Q 039861 437 HLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSL 516 (557)
Q Consensus 437 ~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 516 (557)
.++.+..+++|++|++++|. ++.++ .+..+++|+.|++++| .++.+ ..+..+++|+.|
T Consensus 235 ~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L 292 (347)
T 4fmz_A 235 DLSPLANLSQLTWLEIGTNQ-ISDIN-------------AVKDLTKLKMLNVGSN-QISDI-------SVLNNLSQLNSL 292 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSC-CCCCG-------------GGTTCTTCCEEECCSS-CCCCC-------GGGGGCTTCSEE
T ss_pred CCcchhcCCCCCEEECCCCc-cCCCh-------------hHhcCCCcCEEEccCC-ccCCC-------hhhcCCCCCCEE
Confidence 55558899999999999864 33321 1457899999999996 44443 246789999999
Q ss_pred eeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 517 SIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 517 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
++++|+.....|..+..+++|++|++++|+..
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 99999644455566677999999999999844
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.1e-22 Score=209.24 Aligned_cols=274 Identities=21% Similarity=0.289 Sum_probs=130.6
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCccccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIG 304 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~ 304 (557)
+.++++|++|++ +++.+..+|. ++++++|++|++++|. +..+|. ++.+++|++|++++ . +..++. ++
T Consensus 108 ~~~l~~L~~L~L-------~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~-~~ 174 (466)
T 1o6v_A 108 LANLTNLTGLTL-------FNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN-Q-VTDLKP-LA 174 (466)
T ss_dssp GTTCTTCCEEEC-------CSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE-S-CCCCGG-GT
T ss_pred hcCCCCCCEEEC-------CCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC-c-ccCchh-hc
Confidence 444444444444 4444444433 4444444444444444 444432 44444444444432 1 222222 55
Q ss_pred CCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccC
Q 039861 305 KLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEK 384 (557)
Q Consensus 305 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 384 (557)
++++|++|++++| .+..++ .+..+++|+.|++..+.... +..+..+++|+.+.+.+.... ... ....+.+
T Consensus 175 ~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~-~~~--~l~~l~~ 244 (466)
T 1o6v_A 175 NLTTLERLDISSN-KVSDIS-VLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQLK-DIG--TLASLTN 244 (466)
T ss_dssp TCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCCC-CCG--GGGGCTT
T ss_pred cCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCCcccc-----cccccccCCCCEEECCCCCcc-cch--hhhcCCC
Confidence 5566666666665 333333 35555566665555444332 112344555555555543221 111 1112222
Q ss_pred CCCCchHHh---hhhcCCCCCCccEEEEeecCCcCCCCCc----ccccCccccCccccCCCCCCCCCCCcCeeeeccccC
Q 039861 385 KKNLDEDER---LLEALGPPPNLKKLQIYDYRGRRNVVPK----NWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQS 457 (557)
Q Consensus 385 l~~l~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 457 (557)
++.+..... ....+..+++|+.|++++|.+.. +++ ..++.|++.+|. +..++.++.+++|+.|++++|.
T Consensus 245 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~- 320 (466)
T 1o6v_A 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN- 320 (466)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-
T ss_pred CCEEECCCCccccchhhhcCCCCCEEECCCCccCc--cccccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-
Confidence 222221110 01113445555555555554443 211 112334444442 2333345555666666665543
Q ss_pred ceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCc
Q 039861 458 VKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTL 537 (557)
Q Consensus 458 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 537 (557)
+..++ .+..+++|+.|++++|. ++.+ ..+..+++|+.|++++|+ +..++. +..+++|
T Consensus 321 l~~~~-------------~~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L 377 (466)
T 1o6v_A 321 ISDIS-------------PVSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRI 377 (466)
T ss_dssp CSCCG-------------GGGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTC
T ss_pred CCCch-------------hhccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCc-cCccch-hhcCCCC
Confidence 21111 13457777777777753 3332 246677888888888885 444443 5667888
Q ss_pred ceEEEecCCCc
Q 039861 538 QKLEIWGCPIL 548 (557)
Q Consensus 538 ~~L~l~~c~~l 548 (557)
+.|++++|+-.
T Consensus 378 ~~L~l~~n~~~ 388 (466)
T 1o6v_A 378 TQLGLNDQAWT 388 (466)
T ss_dssp CEEECCCEEEE
T ss_pred CEEeccCCccc
Confidence 88888888644
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=3e-22 Score=213.41 Aligned_cols=267 Identities=16% Similarity=0.146 Sum_probs=135.2
Q ss_pred CCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCc
Q 039861 260 HLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTK 338 (557)
Q Consensus 260 ~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 338 (557)
+|++|++++|. +..+| ..++.+++|++|++++|. +..+|..++.+++|++|++++|......|..++.+++|++|++
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 34555555554 44444 235666666666666654 5566666666666666666666333333445666666666666
Q ss_pred eEecCccCCccCccccccCCcCCCceecCCCCCCChh-HHHHhhccCCCCCchH-----HhhhhcCCCCCCccEEEEeec
Q 039861 339 LVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAG-EARRAELEKKKNLDED-----ERLLEALGPPPNLKKLQIYDY 412 (557)
Q Consensus 339 ~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~-~~~~~~l~~l~~l~~~-----~~~~~~l~~~~~L~~L~l~~~ 412 (557)
..+...... ....+..+++|+.+++++........ ......+.+++.+... ...+..+..+++|+.|++++|
T Consensus 333 ~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 333 KGNTKRLEL--GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CSCSSCCBC--CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCCccccc--chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 554433110 11123444455555554432111000 0011112222222211 112334555666777777666
Q ss_pred CCcCCCCCccc------ccCccccCccccCCCCC-CCCCCCcCeeeeccccCceE-ecccccCCCCCCCCcccccccccc
Q 039861 413 RGRRNVVPKNW------IMDLSLFRCRNCEHLPP-LGKLPSLEYLEIEGMQSVKR-VGNEFLGVESDTDGSSVIAFPKLK 484 (557)
Q Consensus 413 ~~~~~~~~~~~------l~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~ 484 (557)
..... .++.+ ++.|++++|......|. ++.+++|++|++++|.--.. ++. ...+..+++|+
T Consensus 411 ~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~~l~~L~ 479 (606)
T 3t6q_A 411 RLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK----------TNSLQTLGRLE 479 (606)
T ss_dssp CEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS----------SCGGGGCTTCC
T ss_pred cCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc----------chhhccCCCcc
Confidence 55431 11221 33346666554333333 56677777777766542110 000 01134567777
Q ss_pred cccccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 485 KLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 485 ~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
.|++++|. ++.+ .|..+..+++|+.|++++|......|..+.++++| .|++++|...
T Consensus 480 ~L~Ls~n~-l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 480 ILVLSFCD-LSSI-----DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp EEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred EEECCCCc-cCcc-----ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 77777753 3322 23566777778888888775444556666677777 7777777544
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=220.16 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=121.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-ch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~ 253 (557)
..++.|.+..+.+..+.. ..|.++++|++|++++|.. ...+.|..|.++++|++|+| ++|.+..+ |.
T Consensus 24 ~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~L-------s~N~l~~~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDL-------GSSKIYFLHPD 91 (844)
T ss_dssp TTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEEC-------TTCCCCEECTT
T ss_pred CCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEEC-------CCCcCcccCHh
Confidence 789999999988775543 3455699999999999853 33334777999999999999 88888876 78
Q ss_pred hhhcccCCCeeecccCCcccc-cchh--hhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCcccccccC
Q 039861 254 NIEKLLHLKYLNLKSQNKIEK-LPET--LCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYLPVGIGE 329 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~ 329 (557)
.++++.+|++|+|++|. +.. +|.. ++++++|++|++++|......| ..++++++|++|++++|......|..++.
T Consensus 92 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 89999999999999998 554 6655 8899999999999987433333 56899999999999998555555666666
Q ss_pred c--ccccccCceEecCc
Q 039861 330 L--IRLRRVTKLVVGGG 344 (557)
Q Consensus 330 L--~~L~~L~~~~~~~~ 344 (557)
+ ++|+.|++..+...
T Consensus 171 l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLY 187 (844)
T ss_dssp HHHCSSCCCEECCSBSC
T ss_pred ccCCccceEECCCCccc
Confidence 5 66776666655443
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.3e-23 Score=204.12 Aligned_cols=253 Identities=16% Similarity=0.125 Sum_probs=141.7
Q ss_pred CcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCc-Cccc-ccchhhhcccCCCeeecccCCccc-ccchh
Q 039861 202 RGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSV-NDIK-EIPTNIEKLLHLKYLNLKSQNKIE-KLPET 278 (557)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~-~~l~-~lp~~~~~l~~L~~L~L~~~~~l~-~lp~~ 278 (557)
.+++.|++.++.+.... .+|..|.++++|++|++ ++ +.+. .+|..++++++|++|++++|. +. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L-------~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYI-------GGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEE-------EEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGG
T ss_pred ceEEEEECCCCCccCCc-ccChhHhCCCCCCeeeC-------CCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHH
Confidence 45666666666532100 34555667777777777 52 4444 566667777777777777776 44 66666
Q ss_pred hhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcc-cccccCceEecCccCCccCccccccC
Q 039861 279 LCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELI-RLRRVTKLVVGGGYDRACSLGSLKKL 357 (557)
Q Consensus 279 ~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~l~~L~~L 357 (557)
++++++|++|++++|.....+|..++.+++|++|++++|.....+|..++.+. +|+.|++..+......+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~--------- 191 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--------- 191 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC---------
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC---------
Confidence 77777777777777664346666677777777777777643335666666665 56665554333221000
Q ss_pred CcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCC
Q 039861 358 NLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEH 437 (557)
Q Consensus 358 ~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 437 (557)
..+..++ |+.|++++|.+.. .++
T Consensus 192 --------------------------------------~~~~~l~-L~~L~Ls~N~l~~--~~~---------------- 214 (313)
T 1ogq_A 192 --------------------------------------PTFANLN-LAFVDLSRNMLEG--DAS---------------- 214 (313)
T ss_dssp --------------------------------------GGGGGCC-CSEEECCSSEEEE--CCG----------------
T ss_pred --------------------------------------hHHhCCc-ccEEECcCCcccC--cCC----------------
Confidence 1111122 5555555554332 101
Q ss_pred CCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceee
Q 039861 438 LPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLS 517 (557)
Q Consensus 438 l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 517 (557)
..+..+++|++|+++++. +...... +..+++|++|+++++.. . +.+|..+..+++|+.|+
T Consensus 215 -~~~~~l~~L~~L~L~~N~-l~~~~~~------------~~~l~~L~~L~Ls~N~l-~-----~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 215 -VLFGSDKNTQKIHLAKNS-LAFDLGK------------VGLSKNLNGLDLRNNRI-Y-----GTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp -GGCCTTSCCSEEECCSSE-ECCBGGG------------CCCCTTCCEEECCSSCC-E-----ECCCGGGGGCTTCCEEE
T ss_pred -HHHhcCCCCCEEECCCCc-eeeecCc------------ccccCCCCEEECcCCcc-c-----CcCChHHhcCcCCCEEE
Confidence 114455666666666543 1111100 22456666677666432 1 12355666777777777
Q ss_pred eccCccccCCCCCcCCCCCcceEEEecCCCccc
Q 039861 518 IQSCPKLKALPDHLLQKSTLQKLEIWGCPILKE 550 (557)
Q Consensus 518 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 550 (557)
+++|+....+|.. ..+++|+.+++++|+.+..
T Consensus 275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 7777544466665 5567777777777776543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.9e-22 Score=205.16 Aligned_cols=297 Identities=18% Similarity=0.263 Sum_probs=207.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++. +.++++|++|++++|.+. . +|. +..+++|++|++ +++.+..+|.
T Consensus 90 ~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~---~-~~~-~~~l~~L~~L~l-------~~n~l~~~~~- 151 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP-----LANLTNLTGLTLFNNQIT---D-IDP-LKNLTNLNRLEL-------SSNTISDISA- 151 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCC---C-CGG-GTTCTTCSEEEE-------EEEEECCCGG-
T ss_pred ccCCEEECCCCccccChh-----hcCCCCCCEEECCCCCCC---C-ChH-HcCCCCCCEEEC-------CCCccCCChh-
Confidence 678888887777766544 445899999999998743 3 233 889999999999 7777887764
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
++.+.+|++|++++ . +..++. ++++++|++|++++|. +..++ .+..+++|++|++++| .+..++. ++.+++|+
T Consensus 152 ~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~ 224 (466)
T 1o6v_A 152 LSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNN-QISDITP-LGILTNLD 224 (466)
T ss_dssp GTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GGGCTTCC
T ss_pred hccCCcccEeecCC-c-ccCchh-hccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCC-ccccccc-ccccCCCC
Confidence 88888999998864 3 556655 8888899999998876 66665 4788888899988888 4444443 67788888
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHh---hhhcCCCCCCccEEEEee
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDER---LLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~---~~~~l~~~~~L~~L~l~~ 411 (557)
+|++..+.... +..+..+++|+.+++.+..-..... ...+..++.+..... ....+..+++|+.|++++
T Consensus 225 ~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 225 ELSLNGNQLKD-----IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296 (466)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred EEECCCCCccc-----chhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence 88877665443 3456667777777777654322221 233344443332111 112267789999999999
Q ss_pred cCCcCCCCCc----ccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccc
Q 039861 412 YRGRRNVVPK----NWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLE 487 (557)
Q Consensus 412 ~~~~~~~~~~----~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 487 (557)
|.... +++ ..++.|++.+|. +..++.+..+++|++|++++|. +..++ .+..+++|+.|+
T Consensus 297 n~l~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~l~~l~~L~~L~ 359 (466)
T 1o6v_A 297 NQLED--ISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNK-VSDVS-------------SLANLTNINWLS 359 (466)
T ss_dssp SCCSC--CGGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC-CCCCG-------------GGTTCTTCCEEE
T ss_pred CcccC--chhhcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCc-cCCch-------------hhccCCCCCEEe
Confidence 98766 332 124557888885 3444558899999999999874 43331 145789999999
Q ss_pred ccccccccccccccccccccccCCccceeeeccCccccCCCCC
Q 039861 488 FRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDH 530 (557)
Q Consensus 488 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 530 (557)
+++|. +..+. | +..+++|+.|++++|+ +..+|..
T Consensus 360 l~~n~-l~~~~-----~--~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 360 AGHNQ-ISDLT-----P--LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp CCSSC-CCBCG-----G--GTTCTTCCEEECCCEE-EECCCBC
T ss_pred CCCCc-cCccc-----h--hhcCCCCCEEeccCCc-ccCCchh
Confidence 99965 33321 2 7789999999999995 6666543
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=2.2e-22 Score=212.11 Aligned_cols=144 Identities=18% Similarity=0.218 Sum_probs=119.1
Q ss_pred eEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhh
Q 039861 177 IRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNI 255 (557)
Q Consensus 177 ~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~ 255 (557)
.+.+.+..+....+|..+ .++|++|++++|. +....|..|.++++|++|+| ++|.++.+ |..+
T Consensus 33 ~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~~ 96 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL------PPRTKALSLSQNS---ISELRMPDISFLSELRVLRL-------SHNRIRSLDFHVF 96 (562)
T ss_dssp CCEEECTTSCCCSCCTTS------CTTCCEEECCSSC---CCCCCGGGTTTCTTCCEEEC-------CSCCCCEECTTTT
T ss_pred CcEEEcCCCCCccCCCCC------CCCcCEEECCCCC---ccccChhhhccCCCccEEEC-------CCCCCCcCCHHHh
Confidence 367777777777777654 3789999999998 44555677999999999999 89999887 5779
Q ss_pred hcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccC--cccccCCCCCcEeecCCCCCCCcccccccCcccc
Q 039861 256 EKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLREL--PRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL 333 (557)
Q Consensus 256 ~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 333 (557)
+++++|++|++++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..++.+++|
T Consensus 97 ~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L 169 (562)
T 3a79_B 97 LFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHL 169 (562)
T ss_dssp TTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTS
T ss_pred CCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--Cchhhhhhc
Confidence 999999999999999 8999976 89999999999988 6664 4789999999999999984 433 346666666
Q ss_pred --cccCceEecC
Q 039861 334 --RRVTKLVVGG 343 (557)
Q Consensus 334 --~~L~~~~~~~ 343 (557)
+.|++..+..
T Consensus 170 ~L~~L~L~~n~l 181 (562)
T 3a79_B 170 HLSCILLDLVSY 181 (562)
T ss_dssp CEEEEEEEESSC
T ss_pred eeeEEEeecccc
Confidence 8888888765
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=219.53 Aligned_cols=168 Identities=19% Similarity=0.169 Sum_probs=127.6
Q ss_pred EEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcC-ccccc-chhhhccc
Q 039861 182 LIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVN-DIKEI-PTNIEKLL 259 (557)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l-p~~~~~l~ 259 (557)
...+....+|. . .+++++|++++|. +....|..|.++++|++|+| +++ .+..+ |..+++++
T Consensus 11 cs~~~L~~vP~-l------p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdL-------s~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 11 YRFCNLTQVPQ-V------LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLEL-------GSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp ESCCCSSCCCS-S------CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEE-------CTTCCCCEECTTTTSSCT
T ss_pred ccCCCCCCCCC-C------CCCcCEEECCCCc---CCccChhHCcccccCeEEeC-------CCCCCccccCHHHhcCCC
Confidence 33445555565 2 6789999999998 44555777999999999999 666 45567 67899999
Q ss_pred CCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCccc--ccCCCCCcEeecCCCCCCCccc-ccccCcccccc
Q 039861 260 HLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELPRG--IGKLRKLMYIDNDDTDSLRYLP-VGIGELIRLRR 335 (557)
Q Consensus 260 ~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~ 335 (557)
+|++|+|++|. +..+ |..++++++|++|++++|.....+|.. ++++++|++|++++|......| ..++++++|++
T Consensus 74 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 74 NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 99999999999 6665 889999999999999998855556665 8999999999999995433333 46899999999
Q ss_pred cCceEecCccCCccCccccccCCcCCCceecCC
Q 039861 336 VTKLVVGGGYDRACSLGSLKKLNLLRECTIRGL 368 (557)
Q Consensus 336 L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 368 (557)
|++..+......+..+..+.. ++|+.+.+...
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~-~~L~~L~L~~n 184 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQG-KTLSFFSLAAN 184 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHH-CSSCCCEECCS
T ss_pred EECCCCcCCeeCHHHcccccC-CccceEECCCC
Confidence 999887765433334443322 45666666543
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=9.5e-23 Score=199.19 Aligned_cols=222 Identities=21% Similarity=0.347 Sum_probs=166.3
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
...++.|++.++.+. . +|..+.++++|++|+| ++|.+..+|..++++.+|++|++++|. +..+|..++
T Consensus 80 ~~~l~~L~L~~n~l~---~-lp~~l~~l~~L~~L~L-------~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---Q-FPDQAFRLSHLQHMTI-------DAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIA 147 (328)
T ss_dssp STTCCEEEEESSCCS---S-CCSCGGGGTTCSEEEE-------ESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGG
T ss_pred ccceeEEEccCCCch---h-cChhhhhCCCCCEEEC-------CCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHh
Confidence 467788888887742 2 4555777888888888 788888888888888889999998888 778888888
Q ss_pred ccCcCcEeecCCccccccCcccccC---------CCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCc
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGK---------LRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSL 351 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l 351 (557)
++++|++|++++|..+..+|..++. +++|++|++++| .++.+|..++.+++|++|++.++....
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~------ 220 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA------ 220 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC------
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc------
Confidence 8889999999888878888877654 888888888887 556777777777777777665443221
Q ss_pred cccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccC
Q 039861 352 GSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFR 431 (557)
Q Consensus 352 ~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~ 431 (557)
.++.+..+++|+.|++++|....
T Consensus 221 ------------------------------------------l~~~l~~l~~L~~L~Ls~n~~~~--------------- 243 (328)
T 4fcg_A 221 ------------------------------------------LGPAIHHLPKLEELDLRGCTALR--------------- 243 (328)
T ss_dssp ------------------------------------------CCGGGGGCTTCCEEECTTCTTCC---------------
T ss_pred ------------------------------------------CchhhccCCCCCEEECcCCcchh---------------
Confidence 01123445678888887766544
Q ss_pred ccccCCCC-CCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccC
Q 039861 432 CRNCEHLP-PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIM 510 (557)
Q Consensus 432 ~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 510 (557)
.+| .++.+++|++|++++|.....++.. +..+++|+.|++++|+.+. .+|..++.+
T Consensus 244 -----~~p~~~~~l~~L~~L~L~~n~~~~~~p~~------------~~~l~~L~~L~L~~n~~~~------~iP~~l~~L 300 (328)
T 4fcg_A 244 -----NYPPIFGGRAPLKRLILKDCSNLLTLPLD------------IHRLTQLEKLDLRGCVNLS------RLPSLIAQL 300 (328)
T ss_dssp -----BCCCCTTCCCCCCEEECTTCTTCCBCCTT------------GGGCTTCCEEECTTCTTCC------CCCGGGGGS
T ss_pred -----hhHHHhcCCCCCCEEECCCCCchhhcchh------------hhcCCCCCEEeCCCCCchh------hccHHHhhc
Confidence 123 3678889999999988877666544 3468899999999987744 446788999
Q ss_pred CccceeeeccC
Q 039861 511 PRLSSLSIQSC 521 (557)
Q Consensus 511 ~~L~~L~l~~c 521 (557)
++|+.+.+..+
T Consensus 301 ~~L~~l~l~~~ 311 (328)
T 4fcg_A 301 PANCIILVPPH 311 (328)
T ss_dssp CTTCEEECCGG
T ss_pred cCceEEeCCHH
Confidence 99999998876
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.2e-22 Score=197.27 Aligned_cols=253 Identities=16% Similarity=0.147 Sum_probs=191.7
Q ss_pred CceEEEEEEecCCCC---cccccccccCCCCcceEEEecc-CCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc-
Q 039861 175 KKIRHLMLIVRGRAS---VPISIWDNVKGLRGLRSFLVKS-DEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK- 249 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~---~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~- 249 (557)
.+++.+.+..+.... +|..+ .++++|++|++++ |. +...+|..|.++++|++|++ ++|.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l----~~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~L-------s~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL----ANLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYI-------THTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG----GGCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEE-------EEECCEE
T ss_pred ceEEEEECCCCCccCCcccChhH----hCCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEEC-------cCCeeCC
Confidence 579999999888763 44444 4499999999995 76 44457888999999999999 888887
Q ss_pred ccchhhhcccCCCeeecccCCccc-ccchhhhccCcCcEeecCCccccccCcccccCCC-CCcEeecCCCCCCCcccccc
Q 039861 250 EIPTNIEKLLHLKYLNLKSQNKIE-KLPETLCELHNLERLNVDDCENLRELPRGIGKLR-KLMYIDNDDTDSLRYLPVGI 327 (557)
Q Consensus 250 ~lp~~~~~l~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~i 327 (557)
.+|..++++++|++|++++|. +. .+|..++.+++|++|++++|.....+|..++.++ +|++|++++|.....+|..+
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 789999999999999999999 65 7899999999999999999885558999999998 99999999995555788888
Q ss_pred cCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEE
Q 039861 328 GELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKL 407 (557)
Q Consensus 328 ~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L 407 (557)
+.++ |+.|++..+.... ..+..+..+++|+.|
T Consensus 195 ~~l~-L~~L~Ls~N~l~~-----------------------------------------------~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEG-----------------------------------------------DASVLFGSDKNTQKI 226 (313)
T ss_dssp GGCC-CSEEECCSSEEEE-----------------------------------------------CCGGGCCTTSCCSEE
T ss_pred hCCc-ccEEECcCCcccC-----------------------------------------------cCCHHHhcCCCCCEE
Confidence 7776 7776654433221 012345566788888
Q ss_pred EEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccc
Q 039861 408 QIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLE 487 (557)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 487 (557)
++++|.+.. . +|.+..+++|++|+++++.-...++.. +..+++|+.|+
T Consensus 227 ~L~~N~l~~--~------------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~------------l~~l~~L~~L~ 274 (313)
T 1ogq_A 227 HLAKNSLAF--D------------------LGKVGLSKNLNGLDLRNNRIYGTLPQG------------LTQLKFLHSLN 274 (313)
T ss_dssp ECCSSEECC--B------------------GGGCCCCTTCCEEECCSSCCEECCCGG------------GGGCTTCCEEE
T ss_pred ECCCCceee--e------------------cCcccccCCCCEEECcCCcccCcCChH------------HhcCcCCCEEE
Confidence 888776543 1 233566788999999886532233332 34678899999
Q ss_pred ccccccccccccccccccccccCCccceeeeccCccccCCCC
Q 039861 488 FRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD 529 (557)
Q Consensus 488 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 529 (557)
++++.. . +.+|.. ..+++|+.|++.+|+.+...|.
T Consensus 275 Ls~N~l-~-----~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 275 VSFNNL-C-----GEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCSSEE-E-----EECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred CcCCcc-c-----ccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 998653 2 223444 7789999999999987776553
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.2e-21 Score=198.07 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=100.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....+| . +..+++|++|++++|.+.. +| ++.+++|++|++ ++|.+..+|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~----l~~l~~L~~L~Ls~n~l~~----~~--~~~l~~L~~L~L-------s~N~l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-G----IEKLTGLTKLICTSNNITT----LD--LSQNTNLTYLAC-------DSNKLTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-T----GGGCTTCSEEECCSSCCSC----CC--CTTCTTCSEEEC-------CSSCCSCCC--
T ss_pred CCCCEEEccCCCcccCh-h----hcccCCCCEEEccCCcCCe----Ec--cccCCCCCEEEC-------cCCCCceee--
Confidence 55677777666665543 2 2337777777777776432 23 666777777777 666666664
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
++++++|++|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|++++|..++.+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 6677777777777776 66665 6677777777777765 55553 667777777777777555554 356667777
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecC
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRG 367 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~ 367 (557)
.|++..+.... +. +..++.|+.+.+.+
T Consensus 174 ~L~ls~n~l~~-----l~-l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 174 TLDCSFNKITE-----LD-VSQNKLLNRLNCDT 200 (457)
T ss_dssp EEECCSSCCCC-----CC-CTTCTTCCEEECCS
T ss_pred EEECCCCccce-----ec-cccCCCCCEEECcC
Confidence 77666555443 11 34445555555544
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=6.4e-22 Score=213.81 Aligned_cols=254 Identities=16% Similarity=0.121 Sum_probs=167.3
Q ss_pred EEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcc
Q 039861 180 LMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKL 258 (557)
Q Consensus 180 l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l 258 (557)
+.........+|..+ .+++++|++++|. +....+..|.++++|++|++ +++.+..+ |..++++
T Consensus 9 ~~cs~~~L~~ip~~~------~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~~~~~l 72 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDL------PTNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDV-------GFNTISKLEPELCQKL 72 (680)
T ss_dssp EECCSSCCSSCCSCS------CTTCSEEECCSSC---CCCCCGGGGGGGTTCSEEEC-------CSSCCCCCCTTHHHHC
T ss_pred eECCCCCcccccccc------CCCCcEEECCCCC---CCCcCHHHHhCCCcCcEEEC-------CCCccCccCHHHHhcc
Confidence 333344455556543 3689999999998 44555667999999999999 88888876 5779999
Q ss_pred cCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCcccccccCccccccc
Q 039861 259 LHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRV 336 (557)
Q Consensus 259 ~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 336 (557)
++|++|++++|. +..+|. .|+++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|
T Consensus 73 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 73 PMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 999999999998 889986 69999999999999987 56665 578999999999999996555566778999999999
Q ss_pred CceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCc-----hH----HhhhhcCCCCCCccEE
Q 039861 337 TKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLD-----ED----ERLLEALGPPPNLKKL 407 (557)
Q Consensus 337 ~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~-----~~----~~~~~~l~~~~~L~~L 407 (557)
++..+.........+. ...++.|+.+++.+..- ..........+..+..+. .. ......+ ..++|+.|
T Consensus 151 ~L~~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L 227 (680)
T 1ziw_A 151 LLSNNKIQALKSEELD-IFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNL 227 (680)
T ss_dssp ECCSSCCCCBCHHHHG-GGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEE
T ss_pred EccCCcccccCHHHhh-ccccccccEEECCCCcc-cccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEE
Confidence 9887765432111111 12345666777765422 111111111222222111 00 0111111 23677888
Q ss_pred EEeecCCcCCCCCccc--------ccCccccCccccCCCC-CCCCCCCcCeeeecccc
Q 039861 408 QIYDYRGRRNVVPKNW--------IMDLSLFRCRNCEHLP-PLGKLPSLEYLEIEGMQ 456 (557)
Q Consensus 408 ~l~~~~~~~~~~~~~~--------l~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~ 456 (557)
++++|.... .++.+ ++.|++++|......| .++.+++|++|+++++.
T Consensus 228 ~L~~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 228 SLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp ECTTSCCCE--ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred EccCCcccc--cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 887776554 22332 4445666665333333 36777888888887754
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1e-21 Score=192.68 Aligned_cols=292 Identities=17% Similarity=0.161 Sum_probs=179.7
Q ss_pred ceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chh
Q 039861 176 KIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTN 254 (557)
Q Consensus 176 ~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~ 254 (557)
.++.+.+..+....+|..+ .+.|++|++++|. +....|..|.++++|++|++ ++|.+..+ |..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI------SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVL-------VNNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC------CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEEC-------CSSCCCEECGGG
T ss_pred cCCEEECCCCCccccCCCC------CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEEC-------CCCccCccCHhH
Confidence 4556666666666666543 3578888888887 33444556788888888888 77777766 567
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCC--CcccccccCcc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSL--RYLPVGIGELI 331 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l--~~~p~~i~~L~ 331 (557)
++++++|++|++++|. +..+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...|..++.+
T Consensus 98 ~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 172 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172 (332)
T ss_dssp STTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred hhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence 8888888888888887 778876554 788888888876 566664 3678888888888887432 1345556666
Q ss_pred cccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEee
Q 039861 332 RLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~ 411 (557)
+|+.|++..+.......... +.|+.+.+++..-.. ..+..+..+++|+.|++++
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~------~~L~~L~l~~n~i~~--------------------~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLP------ETLNELHLDHNKIQA--------------------IELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSC------SSCSCCBCCSSCCCC--------------------CCTTSSTTCTTCSCCBCCS
T ss_pred ccCEEECcCCCCCccCcccc------CCCCEEECCCCcCCc--------------------cCHHHhcCCCCCCEEECCC
Confidence 77777766655433111111 344444444321110 0123445566666666666
Q ss_pred cCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccc
Q 039861 412 YRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNM 491 (557)
Q Consensus 412 ~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 491 (557)
|.+.. +++. .+..+++|++|+++++. ++.++.. +..+++|+.|+++++
T Consensus 227 N~l~~--~~~~-----------------~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 227 NQIRM--IENG-----------------SLSFLPTLRELHLDNNK-LSRVPAG------------LPDLKLLQVVYLHTN 274 (332)
T ss_dssp SCCCC--CCTT-----------------GGGGCTTCCEEECCSSC-CCBCCTT------------GGGCTTCCEEECCSS
T ss_pred CcCCc--CChh-----------------HhhCCCCCCEEECCCCc-CeecChh------------hhcCccCCEEECCCC
Confidence 65443 2111 25677889999998764 4444433 346788999999884
Q ss_pred ccccccccccccccc-cccCCccceeeeccCccc--cCCCCCcCCCCCcceEEEecCCC
Q 039861 492 EELEEWDCGTAIKGE-IIIMPRLSSLSIQSCPKL--KALPDHLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 492 ~~l~~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~~ 547 (557)
.++.++...-.+.. ....++|+.|++.+|+.. ...|..+..+++|+.+++++|.+
T Consensus 275 -~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 275 -NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp -CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred -CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 45554320000000 112577899999999754 34455667788999999988853
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=6.9e-22 Score=211.94 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=114.8
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT- 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~- 253 (557)
..++.|.+..+.+..++.. +|.++++|++|++++|. +..+.|.+|.++++|++|+| ++|.++.+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~---~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~L-------s~N~l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLIL-------TGNPIQSLALG 118 (635)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEEC-------TTCCCCEECGG
T ss_pred cCCCEEEeeCCCCCCCCHH---HHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEc-------cCCcCCCCCHH
Confidence 5788999988888776653 34459999999999997 44555667899999999999 8888998884
Q ss_pred hhhcccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccc--cCcccccCCCCCcEeecCCCCCCCcccccccCc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLR--ELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGEL 330 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L 330 (557)
.|+++.+|++|++++|. +..+|. .|+++++|++|++++|. +. .+|..++.+++|++|++++|......|..++.+
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 58999999999999998 888874 58899999999999987 44 357778899999999999984433344555555
Q ss_pred ccccc
Q 039861 331 IRLRR 335 (557)
Q Consensus 331 ~~L~~ 335 (557)
.+++.
T Consensus 197 ~~l~~ 201 (635)
T 4g8a_A 197 HQMPL 201 (635)
T ss_dssp HTCTT
T ss_pred hhhhh
Confidence 55543
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=6.1e-22 Score=204.60 Aligned_cols=291 Identities=21% Similarity=0.174 Sum_probs=217.3
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.|.+..+.+..++.. .|.++++|++|++++|. +....|..|.++++|++|+| ++|.+..+|..
T Consensus 32 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD---EFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGL-------RSNRLKLIPLG 98 (477)
T ss_dssp TTCSEEECCSSCCCEECTT---TTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEEC-------CSSCCCSCCTT
T ss_pred CCCcEEECCCCccceECHh---HccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEEC-------CCCcCCccCcc
Confidence 6789999998888766443 34559999999999998 44556778999999999999 88999999864
Q ss_pred -hhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccc-cccCcc
Q 039861 255 -IEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPV-GIGELI 331 (557)
Q Consensus 255 -~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~ 331 (557)
++++.+|++|++++|. +..+ |..+.++++|++|++++|......|..+..+++|++|++++| .+..+|. .++.++
T Consensus 99 ~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 99 VFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLH 176 (477)
T ss_dssp SSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCT
T ss_pred cccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccC
Confidence 7999999999999999 6655 678999999999999998844445667899999999999999 5556654 588999
Q ss_pred cccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEee
Q 039861 332 RLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~ 411 (557)
+|+.|++..+....... ..+..+++|+.+.+.+...... .+.......+|+.|++++
T Consensus 177 ~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~--------------------~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDT--------------------MTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp TCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCE--------------------ECTTTTTTCCCSEEEEES
T ss_pred CCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccccc--------------------cCcccccCccccEEECcC
Confidence 99999988876654322 2455667788888876543321 112223345899999999
Q ss_pred cCCcCCCCCccc------ccCccccCccccCCCC-CCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccc
Q 039861 412 YRGRRNVVPKNW------IMDLSLFRCRNCEHLP-PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLK 484 (557)
Q Consensus 412 ~~~~~~~~~~~~------l~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 484 (557)
|.+.. +|+.. ++.|++++|......+ .+..+++|++|+++++. +..+.... +..+++|+
T Consensus 234 n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----------~~~l~~L~ 299 (477)
T 2id5_A 234 CNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYA-----------FRGLNYLR 299 (477)
T ss_dssp SCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTT-----------BTTCTTCC
T ss_pred Ccccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHH-----------hcCcccCC
Confidence 88766 54322 4456777775332222 37899999999999865 44442211 34689999
Q ss_pred cccccccccccccccccccccccccCCccceeeeccCcc
Q 039861 485 KLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPK 523 (557)
Q Consensus 485 ~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 523 (557)
.|+++++ .++.+. +..+..+++|+.|++++|+.
T Consensus 300 ~L~L~~N-~l~~~~-----~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 300 VLNVSGN-QLTTLE-----ESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EEECCSS-CCSCCC-----GGGBSCGGGCCEEECCSSCE
T ss_pred EEECCCC-cCceeC-----HhHcCCCcccCEEEccCCCc
Confidence 9999995 455443 24567889999999999973
No 42
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.86 E-value=9e-23 Score=213.13 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=112.8
Q ss_pred hHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhhhhcccchhHHHHhhccCChhhhHHHh----------
Q 039861 2 IGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELEAIKKGLLAPLLLSYNELPSKVKQCFT---------- 71 (557)
Q Consensus 2 i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl---------- 71 (557)
++++||++|+|+||||+++|+.|+.+ .. +|...+....+.. ...++..++++||++||.++|.||+
T Consensus 318 ~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~ 393 (549)
T 2a5y_B 318 VLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSAL 393 (549)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHT
T ss_pred HHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHh
Confidence 68999999999999999999999876 22 3333344332221 2466899999999999999999999
Q ss_pred -hhcCCCCCCccCHHHHHHHHHHc--CCcCcCC-cccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEechHHHHHHH
Q 039861 72 -YCAVFPKDYDIQKEELIELWMAQ--GYLSEKG-AKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKMHDIVHDFAQ 147 (557)
Q Consensus 72 -~~a~fp~~~~i~~~~li~~w~a~--g~~~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~~~~ 147 (557)
|||+||+++.|+ ++.|+|+ ||+...+ +.+++++++ ||++|++++|++....+ ...+|+|||++|++|+
T Consensus 394 ~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~ 465 (549)
T 2a5y_B 394 AFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLK 465 (549)
T ss_dssp TGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHH
T ss_pred hheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHH
Confidence 999999999998 8999999 9998876 567888888 99999999999987643 3447999999999999
Q ss_pred HhcccceE
Q 039861 148 YLCSNECL 155 (557)
Q Consensus 148 ~i~~~e~~ 155 (557)
+++.+++.
T Consensus 466 ~~~~~~~~ 473 (549)
T 2a5y_B 466 HVVDAQTI 473 (549)
T ss_dssp TTSCTHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.5e-21 Score=196.54 Aligned_cols=305 Identities=14% Similarity=0.120 Sum_probs=215.8
Q ss_pred cCceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch
Q 039861 174 EKKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT 253 (557)
Q Consensus 174 ~~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~ 253 (557)
...++.+.+..+....++ +.++++|++|++++|.+.. +| ++.+++|++|++ ++|.+..+|
T Consensus 63 l~~L~~L~Ls~n~l~~~~------~~~l~~L~~L~Ls~N~l~~----~~--~~~l~~L~~L~L-------~~N~l~~l~- 122 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD------LSQNTNLTYLACDSNKLTN----LD--VTPLTKLTYLNC-------DTNKLTKLD- 122 (457)
T ss_dssp CTTCSEEECCSSCCSCCC------CTTCTTCSEEECCSSCCSC----CC--CTTCTTCCEEEC-------CSSCCSCCC-
T ss_pred cCCCCEEEccCCcCCeEc------cccCCCCCEEECcCCCCce----ee--cCCCCcCCEEEC-------CCCcCCeec-
Confidence 378999999998887653 4459999999999998543 23 889999999999 888888886
Q ss_pred hhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL 333 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 333 (557)
++.+++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|++|++++| .++.+| ++.+++|
T Consensus 123 -~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L 193 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLL 193 (457)
T ss_dssp -CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTC
T ss_pred -CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--cccCCCC
Confidence 8999999999999998 88885 889999999999999777777 4889999999999999 667776 8889999
Q ss_pred cccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecC
Q 039861 334 RRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYR 413 (557)
Q Consensus 334 ~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~ 413 (557)
+.|++..+..... .+..+++|+.+++++..-.. .+ +..+++|+.|++++|.
T Consensus 194 ~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~----------------------ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 194 NRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTE----------------------ID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSC----------------------CC-CTTCTTCSEEECCSSC
T ss_pred CEEECcCCcCCee------ccccCCCCCEEECcCCcccc----------------------cC-ccccCCCCEEEeeCCc
Confidence 9998887766542 35666777777777643211 11 4567788888888887
Q ss_pred CcCCCCCccccc-------------CccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccc
Q 039861 414 GRRNVVPKNWIM-------------DLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAF 480 (557)
Q Consensus 414 ~~~~~~~~~~l~-------------~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (557)
+.. +|+..+. .|++.+|.....+| .+.+++|+.|++++|..+..++........ -.+...
T Consensus 245 l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~----L~l~~~ 317 (457)
T 3bz5_A 245 LTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITE----LDLSQN 317 (457)
T ss_dssp CSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSC----CCCTTC
T ss_pred CCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceE----echhhc
Confidence 766 4443333 34555555555555 467788888888888877776643221111 013455
Q ss_pred cccccccccccccccccccccccccccccCCccceeeeccCccccCCCCCc------------CCCCCcceEEEecCCCc
Q 039861 481 PKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHL------------LQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 481 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~------------~~l~~L~~L~l~~c~~l 548 (557)
++|+.|+++++ .++. + .++.+++|+.|++++|. ++.+|... ..+.+|+.+++++|.--
T Consensus 318 ~~L~~L~L~~N-~l~~------l--~l~~l~~L~~L~l~~N~-l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 318 PKLVYLYLNNT-ELTE------L--DVSHNTKLKSLSCVNAH-IQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLT 387 (457)
T ss_dssp TTCCEEECTTC-CCSC------C--CCTTCTTCSEEECCSSC-CCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEE
T ss_pred ccCCEEECCCC-cccc------c--ccccCCcCcEEECCCCC-CCCccccccccccCCcEEecceeeecCccccccCcEE
Confidence 67777777664 3332 2 25678888888888884 55444310 01234556666666544
Q ss_pred ccccc
Q 039861 549 KERVS 553 (557)
Q Consensus 549 ~~~~~ 553 (557)
..++.
T Consensus 388 g~ip~ 392 (457)
T 3bz5_A 388 IAVSP 392 (457)
T ss_dssp EECCT
T ss_pred EEcCh
Confidence 44443
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.4e-21 Score=189.94 Aligned_cols=126 Identities=18% Similarity=0.270 Sum_probs=71.1
Q ss_pred CcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcccCCCeeecccCCcccccchhhh
Q 039861 202 RGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+.+++|++++|. +....+..|.++++|++|++ ++|.+..+ |..++.+++|++|++++|. +..+|..+.
T Consensus 52 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~ 120 (330)
T 1xku_A 52 PDTALLDLQNNK---ITEIKDGDFKNLKNLHTLIL-------INNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP 120 (330)
T ss_dssp TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEEC-------CSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC
T ss_pred CCCeEEECCCCc---CCEeChhhhccCCCCCEEEC-------CCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc
Confidence 456666666665 23333334666666666666 55666555 5566666666666666666 666665443
Q ss_pred ccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCC--cccccccCcccccccCceEe
Q 039861 281 ELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLR--YLPVGIGELIRLRRVTKLVV 341 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~ 341 (557)
++|++|++++|. +..++. .+.++++|++|++++|.... ..+..++.+++|+.|++..+
T Consensus 121 --~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 121 --KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp --TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred --ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 566666666655 444433 35666666666666663211 23344555555555554443
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=191.49 Aligned_cols=271 Identities=16% Similarity=0.143 Sum_probs=169.5
Q ss_pred EEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hhhhcccC
Q 039861 182 LIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLH 260 (557)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~ 260 (557)
...+....+|..+ .++|++|++++|.+ ....+..|.++++|++|++ ++|.+..++ ..++++++
T Consensus 38 ~~~~~l~~iP~~~------~~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 38 GSSGSLNSIPSGL------TEAVKSLDLSNNRI---TYISNSDLQRCVNLQALVL-------TSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp CCSTTCSSCCTTC------CTTCCEEECTTSCC---CEECTTTTTTCTTCCEEEC-------TTSCCCEECTTTTTTCTT
T ss_pred CCCCCcccccccc------cccCcEEECCCCcC---cccCHHHhccCCCCCEEEC-------CCCccCccCHhhcCCCCC
Confidence 3444555566543 35788999998874 3444546888999999999 888888774 56888999
Q ss_pred CCeeecccCCcccccchh-hhccCcCcEeecCCccccccCcc--cccCCCCCcEeecCCCCCCCcc-cccccCccccccc
Q 039861 261 LKYLNLKSQNKIEKLPET-LCELHNLERLNVDDCENLRELPR--GIGKLRKLMYIDNDDTDSLRYL-PVGIGELIRLRRV 336 (557)
Q Consensus 261 L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~~L 336 (557)
|++|++++|. +..+|.. ++++++|++|++++|. +..+|. .++++++|++|++++|..+..+ |..++.+++|++|
T Consensus 102 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 102 LEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999888 8888755 7889999999999876 777776 6788999999999988555555 4567888888888
Q ss_pred CceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcC
Q 039861 337 TKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRR 416 (557)
Q Consensus 337 ~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 416 (557)
++..+......+ ..+..+++|+.+.+.+... ..... ..+..+++|+.|++++|.+..
T Consensus 180 ~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l-~~~~~-------------------~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 180 EIDASDLQSYEP---KSLKSIQNVSHLILHMKQH-ILLLE-------------------IFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEETTCCEECT---TTTTTCSEEEEEEEECSCS-TTHHH-------------------HHHHHTTTEEEEEEESCBCTT
T ss_pred ECCCCCcCccCH---HHHhccccCCeecCCCCcc-ccchh-------------------hhhhhcccccEEECCCCcccc
Confidence 887776543212 2333444455555544321 11100 011124566666666665443
Q ss_pred CCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccc
Q 039861 417 NVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEE 496 (557)
Q Consensus 417 ~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 496 (557)
+++. .++.....+.++.+++++ +.+.++. +
T Consensus 237 --~~~~--------------~l~~~~~~~~l~~l~L~~-------------------------------~~l~~~~-l-- 266 (353)
T 2z80_A 237 --FHFS--------------ELSTGETNSLIKKFTFRN-------------------------------VKITDES-L-- 266 (353)
T ss_dssp --CCCC--------------------CCCCCCEEEEES-------------------------------CBCCHHH-H--
T ss_pred --cccc--------------ccccccccchhhcccccc-------------------------------ccccCcc-h--
Confidence 1110 111111222333333332 2222211 1
Q ss_pred cccccccccccccCCccceeeeccCccccCCCCCc-CCCCCcceEEEecCCCc
Q 039861 497 WDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHL-LQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 497 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~l 548 (557)
..+|..+..+++|+.|++++| .++.+|..+ ..+++|++|++++|+-.
T Consensus 267 ----~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 267 ----FQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----hhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 123445667788888888887 467777764 56778888888888744
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=6.1e-20 Score=179.96 Aligned_cols=265 Identities=20% Similarity=0.267 Sum_probs=171.8
Q ss_pred CcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-hhhcccCCCeeecccCCccccc-chhh
Q 039861 202 RGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLNLKSQNKIEKL-PETL 279 (557)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~~ 279 (557)
..++++++.++.... +|..+ .+.|++|++ +++.++.+|. .++++++|++|++++|. +..+ |..+
T Consensus 31 c~l~~l~~~~~~l~~----lp~~~--~~~l~~L~L-------~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK----VPKDL--PPDTALLDL-------QNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF 96 (330)
T ss_dssp EETTEEECTTSCCCS----CCCSC--CTTCCEEEC-------CSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT
T ss_pred CCCeEEEecCCCccc----cCccC--CCCCeEEEC-------CCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh
Confidence 368888888876432 34322 368999999 8888888875 68999999999999998 7766 7889
Q ss_pred hccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCccc-ccccCcccccccCceEecCccCCccCccccccCC
Q 039861 280 CELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLP-VGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLN 358 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 358 (557)
+.+++|++|++++|. +..+|..+. ++|++|++++|. +..++ ..++.+++|++|++..+..... ......+..++
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~ 171 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMK 171 (330)
T ss_dssp TTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG-GBCTTGGGGCT
T ss_pred cCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc-CcChhhccCCC
Confidence 999999999999977 778887765 799999999984 44444 4578888888888876654320 11223455566
Q ss_pred cCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCC
Q 039861 359 LLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHL 438 (557)
Q Consensus 359 ~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l 438 (557)
+|+.+.+.+..-.. ++..+ +++|++|++++|.+.. +++.
T Consensus 172 ~L~~L~l~~n~l~~---------------------l~~~~--~~~L~~L~l~~n~l~~--~~~~---------------- 210 (330)
T 1xku_A 172 KLSYIRIADTNITT---------------------IPQGL--PPSLTELHLDGNKITK--VDAA---------------- 210 (330)
T ss_dssp TCCEEECCSSCCCS---------------------CCSSC--CTTCSEEECTTSCCCE--ECTG----------------
T ss_pred CcCEEECCCCcccc---------------------CCccc--cccCCEEECCCCcCCc--cCHH----------------
Confidence 66666665532110 01111 2577777777766544 2121
Q ss_pred CCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeee
Q 039861 439 PPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSI 518 (557)
Q Consensus 439 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 518 (557)
.+..+++|++|+++++. ++.++... +..+++|+.|+++++. ++ .+|..+..+++|++|++
T Consensus 211 -~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N~-l~------~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 211 -SLKGLNNLAKLGLSFNS-ISAVDNGS-----------LANTPHLRELHLNNNK-LV------KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp -GGTTCTTCCEEECCSSC-CCEECTTT-----------GGGSTTCCEEECCSSC-CS------SCCTTTTTCSSCCEEEC
T ss_pred -HhcCCCCCCEEECCCCc-CceeChhh-----------ccCCCCCCEEECCCCc-Cc------cCChhhccCCCcCEEEC
Confidence 24566777777777654 33332211 3356677777777753 33 23455666777777777
Q ss_pred ccCccccCCCCCcC-------CCCCcceEEEecCCC
Q 039861 519 QSCPKLKALPDHLL-------QKSTLQKLEIWGCPI 547 (557)
Q Consensus 519 ~~c~~l~~lp~~~~-------~l~~L~~L~l~~c~~ 547 (557)
++|+ ++.+|.... ..++|+.|++++||.
T Consensus 271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 7773 665554221 135667777777764
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=9.9e-20 Score=186.45 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=58.3
Q ss_pred CCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeee
Q 039861 439 PPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSI 518 (557)
Q Consensus 439 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 518 (557)
|.+..+++|++|+++++. ++.++... +..+++|+.|+++++ .++.+. +..+..+++|+.|++
T Consensus 212 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVMNS-QVSLIE-----RNAFDGLASLVELNL 273 (452)
T ss_dssp CCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECTTS-CCCEEC-----TTTTTTCTTCCEEEC
T ss_pred ccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeCCC-cCceEC-----HHHhcCCCCCCEEEC
Confidence 445667777777777754 33332211 335677888888774 333332 355677888888888
Q ss_pred ccCccccCCCC-CcCCCCCcceEEEecCCC
Q 039861 519 QSCPKLKALPD-HLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 519 ~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 547 (557)
++| .++.+|. .+..+++|+.|++++||-
T Consensus 274 ~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 274 AHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 888 4666665 345678888888888873
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=185.26 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=54.5
Q ss_pred CCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeee
Q 039861 439 PPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSI 518 (557)
Q Consensus 439 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 518 (557)
|.+..+++|++|+++++. ++.++... +..+++|+.|+++++ .++.+. +..+..+++|+.|++
T Consensus 201 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNH-LSAIRPGS-----------FQGLMHLQKLWMIQS-QIQVIE-----RNAFDNLQSLVEINL 262 (440)
T ss_dssp CCCTTCSSCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECTTC-CCCEEC-----TTSSTTCTTCCEEEC
T ss_pred cccCCCcccCEEECCCCc-cCccChhh-----------hccCccCCEEECCCC-ceeEEC-----hhhhcCCCCCCEEEC
Confidence 445566677777776653 33332211 235667777777764 333332 345667777888888
Q ss_pred ccCccccCCCC-CcCCCCCcceEEEecCCC
Q 039861 519 QSCPKLKALPD-HLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 519 ~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 547 (557)
++| .++.+|. .+..+++|+.|++++||-
T Consensus 263 ~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 263 AHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 777 4666655 345577788888877774
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=6.8e-20 Score=179.72 Aligned_cols=275 Identities=17% Similarity=0.180 Sum_probs=200.3
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++.. .+.++++|++|++.+|. +....|..|.++++|++|++ ++|.+..+|..
T Consensus 54 ~~l~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------~~n~l~~l~~~ 120 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKD---DFKGLQHLYALVLVNNK---ISKIHEKAFSPLRKLQKLYI-------SKNHLVEIPPN 120 (332)
T ss_dssp TTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSC---CCEECGGGSTTCTTCCEEEC-------CSSCCCSCCSS
T ss_pred CCCeEEECCCCcCCccCHh---HhhCCCCCcEEECCCCc---cCccCHhHhhCcCCCCEEEC-------CCCcCCccCcc
Confidence 6789999988887765443 34559999999999998 44556778999999999999 88999999987
Q ss_pred hhcccCCCeeecccCCcccccch-hhhccCcCcEeecCCcccc--ccCcccccCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENL--RELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
+. .+|++|++++|. +..+|. .+..+++|++|++++|... ...|..+..+ +|++|++++| .+..+|..+. +
T Consensus 121 ~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~ 193 (332)
T 2ft3_A 121 LP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--E 193 (332)
T ss_dssp CC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--S
T ss_pred cc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--C
Confidence 75 899999999999 888874 5899999999999998742 2456677777 9999999999 6778887765 7
Q ss_pred cccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEee
Q 039861 332 RLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~ 411 (557)
+|++|++.++....... ..+..+++|+.+.+++..-... ....+..+++|+.|++++
T Consensus 194 ~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~~~--------------------~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIRMI--------------------ENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCCCC--------------------CTTGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCCcC--------------------ChhHhhCCCCCCEEECCC
Confidence 89999988876654222 3455666777777776432111 112455678999999998
Q ss_pred cCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccc
Q 039861 412 YRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNM 491 (557)
Q Consensus 412 ~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 491 (557)
|.+.. +|. .+..+++|++|+++++. ++.++...+.... ....+++|+.|++.++
T Consensus 251 N~l~~--lp~------------------~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 251 NKLSR--VPA------------------GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG-----FGVKRAYYNGISLFNN 304 (332)
T ss_dssp SCCCB--CCT------------------TGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-----CCSSSCCBSEEECCSS
T ss_pred CcCee--cCh------------------hhhcCccCCEEECCCCC-CCccChhHccccc-----cccccccccceEeecC
Confidence 87654 311 25678999999999865 6555543322110 0123678999999997
Q ss_pred ccccccccccccccccccCCccceeeeccCc
Q 039861 492 EELEEWDCGTAIKGEIIIMPRLSSLSIQSCP 522 (557)
Q Consensus 492 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 522 (557)
+. ..+. ..|..+..+++|+.|++++|.
T Consensus 305 ~~-~~~~---~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PV-PYWE---VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SS-CGGG---SCGGGGTTBCCSTTEEC----
T ss_pred cc-cccc---cCcccccccchhhhhhccccc
Confidence 63 3222 125667889999999999985
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=7.3e-20 Score=186.62 Aligned_cols=301 Identities=20% Similarity=0.235 Sum_probs=138.7
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....+|.. .++|++|++++|.+..+ |. ..++|++|++ ++|.++.+| +
T Consensus 91 ~~L~~L~l~~n~l~~lp~~-------~~~L~~L~l~~n~l~~l----~~---~~~~L~~L~L-------~~n~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL-------PQSLKSLLVDNNNLKAL----SD---LPPLLEYLGV-------SNNQLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC-------CTTCCEEECCSSCCSCC----CS---CCTTCCEEEC-------CSSCCSSCC-C
T ss_pred CCCCEEEccCCcCCccccc-------cCCCcEEECCCCccCcc----cC---CCCCCCEEEC-------cCCCCCCCc-c
Confidence 4566676666666554421 35666666666653221 11 0146666666 666666666 4
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
++++++|++|++++|. +..+|..+ .+|++|++++|. +..+| .++++++|++|++++| .+..+|... .+|+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---Cccc
Confidence 6666666666666665 66666432 466666666654 55555 4666666666666666 344444332 3555
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcC-CCCCCccEEEEeecC
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEAL-GPPPNLKKLQIYDYR 413 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l-~~~~~L~~L~l~~~~ 413 (557)
+|++.++.... +..+..+++|+.+++.+..-.. ... ....++.+......+..+ ..+++|+.|++++|.
T Consensus 219 ~L~l~~n~l~~-----lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 219 SIVAGNNILEE-----LPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp EEECCSSCCSS-----CCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred EEECcCCcCCc-----ccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccccCcccCcCCEEECcCCc
Confidence 55555443321 2234445555555554432110 000 001111111111101111 112455555555554
Q ss_pred CcCC-CCCcccccCccccCccccCCCCCCCCC-CCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccc
Q 039861 414 GRRN-VVPKNWIMDLSLFRCRNCEHLPPLGKL-PSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNM 491 (557)
Q Consensus 414 ~~~~-~~~~~~l~~L~l~~~~~~~~l~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 491 (557)
+... .+ +..++.|++.+|.. ..++ .+ ++|++|+++++. ++.++ ..+++|+.|++++|
T Consensus 289 l~~l~~~-~~~L~~L~l~~N~l-~~i~---~~~~~L~~L~Ls~N~-l~~lp---------------~~~~~L~~L~L~~N 347 (454)
T 1jl5_A 289 FSGLSEL-PPNLYYLNASSNEI-RSLC---DLPPSLEELNVSNNK-LIELP---------------ALPPRLERLIASFN 347 (454)
T ss_dssp CSEESCC-CTTCCEEECCSSCC-SEEC---CCCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSS
T ss_pred cCcccCc-CCcCCEEECcCCcC-Cccc---CCcCcCCEEECCCCc-ccccc---------------ccCCcCCEEECCCC
Confidence 4330 01 12344445544421 1121 22 356666665532 22221 12467777777764
Q ss_pred ccccccccccccccccccCCccceeeeccCcccc--CCCCCcCCC-------------CCcceEEEecCCCc
Q 039861 492 EELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLK--ALPDHLLQK-------------STLQKLEIWGCPIL 548 (557)
Q Consensus 492 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~~L~l~~c~~l 548 (557)
.++. +|. .+++|++|++++|+... .+|..+.++ ++|+.|++++|+..
T Consensus 348 -~l~~------lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 348 -HLAE------VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp -CCSC------CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred -cccc------ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 3332 233 35677777777775333 455555444 66777777777644
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=5.4e-20 Score=178.29 Aligned_cols=104 Identities=26% Similarity=0.373 Sum_probs=57.2
Q ss_pred CcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc---chhhhcccCCCeeecccCCcccccchh
Q 039861 202 RGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI---PTNIEKLLHLKYLNLKSQNKIEKLPET 278 (557)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l---p~~~~~l~~L~~L~L~~~~~l~~lp~~ 278 (557)
++|+.|++.+|.+ ....+..|.++++|++|++ ++|.+..+ |..+..+.+|++|++++|. +..+|..
T Consensus 28 ~~l~~L~L~~n~l---~~i~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKL---QSLPHGVFDKLTQLTKLSL-------SSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN 96 (306)
T ss_dssp TTCCEEECCSSCC---CCCCTTTTTTCTTCSEEEC-------CSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE
T ss_pred CCCCEEECCCCcc---CccCHhHhhccccCCEEEC-------CCCccCcccCcccccccccccCEEECCCCc-cccChhh
Confidence 3556666666552 2222333555666666666 55554433 4455556666666666665 5556555
Q ss_pred hhccCcCcEeecCCccccccCcc--cccCCCCCcEeecCCC
Q 039861 279 LCELHNLERLNVDDCENLRELPR--GIGKLRKLMYIDNDDT 317 (557)
Q Consensus 279 ~~~l~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~ 317 (557)
+..+++|++|++++|. +..++. .+..+++|++|++++|
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC
Confidence 5666666666666654 444442 4555666666666655
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=4.9e-20 Score=187.91 Aligned_cols=223 Identities=17% Similarity=0.126 Sum_probs=137.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCce-------------eEEEeccccC
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCL-------------RALNLKVRKP 241 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L-------------~~L~L~~~~~ 241 (557)
..++.+.+..+....+|..+.. +++|+.|++++|. +.+.+|..++++++| ++|++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~----L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l----- 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAEN----VKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELEL----- 78 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEEC-----
T ss_pred ccchhhhcccCchhhCChhHhc----ccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEe-----
Confidence 6688888888877777766554 9999999998886 444567667766664 88888
Q ss_pred CCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCC
Q 039861 242 WSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLR 321 (557)
Q Consensus 242 ~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~ 321 (557)
+++.++.+|.. ..+|++|++++|. +..+|.. +.+|++|++++|. +..+|.. .++|++|++++| .++
T Consensus 79 --~~~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n-~l~ 144 (454)
T 1jl5_A 79 --NNLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNN-QLE 144 (454)
T ss_dssp --TTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSS-CCS
T ss_pred --cCCccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCC-CCC
Confidence 77778777762 4688899998888 7778853 4788888888876 6666542 268888898888 556
Q ss_pred cccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCC
Q 039861 322 YLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPP 401 (557)
Q Consensus 322 ~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~ 401 (557)
.+| .++.+++|++|++.++..... +.. ..+|+.+++.+..-. . ++.++.+
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~l-p~~------~~~L~~L~L~~n~l~-~---------------------l~~~~~l 194 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKL-PDL------PPSLEFIAAGNNQLE-E---------------------LPELQNL 194 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCC-CCC------CTTCCEEECCSSCCS-S---------------------CCCCTTC
T ss_pred CCc-ccCCCCCCCEEECCCCcCccc-CCC------cccccEEECcCCcCC-c---------------------CccccCC
Confidence 677 588888888888877654431 111 135666666553211 0 1245667
Q ss_pred CCccEEEEeecCCcCCCCC--cccccCccccCccccCCCCCCCCCCCcCeeeecccc
Q 039861 402 PNLKKLQIYDYRGRRNVVP--KNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQ 456 (557)
Q Consensus 402 ~~L~~L~l~~~~~~~~~~~--~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 456 (557)
++|+.|++++|.+.. +| +..++.|++.+|. +..+|.++.+++|++|+++++.
T Consensus 195 ~~L~~L~l~~N~l~~--l~~~~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 195 PFLTAIYADNNSLKK--LPDLPLSLESIVAGNNI-LEELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp TTCCEEECCSSCCSS--CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCc--CCCCcCcccEEECcCCc-CCcccccCCCCCCCEEECCCCc
Confidence 788888888887665 32 2245667777774 3467778888888888887753
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=3.7e-19 Score=190.71 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=121.8
Q ss_pred CCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-hhhcccCCCeee
Q 039861 187 RASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLN 265 (557)
Q Consensus 187 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~ 265 (557)
..++|..+ -+.+++|++++|. +..+.|..|.++++|++|+| ++|.++.+|+ +|++|++|++|+
T Consensus 43 l~~vP~~l------p~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~L-------s~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 43 FYKIPDNL------PFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDL-------SRCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp CSSCCSSS------CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEEC-------TTCCCCEECTTTTTTCTTCCEEE
T ss_pred cCccCCCC------CcCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEEC-------CCCcCCCcChhHhcCCCCCCEEE
Confidence 34556543 2378999999998 45555677999999999999 9999999975 699999999999
Q ss_pred cccCCcccccc-hhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCC-cccccccCcccccccCceEec
Q 039861 266 LKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLR-YLPVGIGELIRLRRVTKLVVG 342 (557)
Q Consensus 266 L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~-~~p~~i~~L~~L~~L~~~~~~ 342 (557)
|++|. ++.+| ..|.++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++.+++|++|++..+.
T Consensus 107 Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 107 LTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99998 99988 468999999999999987 777775 48999999999999994322 357788999999999988876
Q ss_pred CccCCccCcccccc
Q 039861 343 GGYDRACSLGSLKK 356 (557)
Q Consensus 343 ~~~~~~~~l~~L~~ 356 (557)
........+..+.+
T Consensus 185 l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 185 IQSIYCTDLRVLHQ 198 (635)
T ss_dssp CCEECGGGGHHHHT
T ss_pred ccccccccccchhh
Confidence 65433344444443
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.2e-21 Score=186.89 Aligned_cols=249 Identities=13% Similarity=0.114 Sum_probs=154.8
Q ss_pred cCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccch
Q 039861 198 VKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPE 277 (557)
Q Consensus 198 ~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 277 (557)
+..+++|+.|++++|. +....|..|..+++|++|+| ++|.+..+++ ++.+++|++|++++|. +..+|.
T Consensus 30 ~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~ 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNL-------SSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV 97 (317)
T ss_dssp HTTGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEEC-------TTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE
T ss_pred hccCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEEC-------CCCcCCcchh-hhhcCCCCEEECcCCc-cccccC
Confidence 3446788888888887 44455677888888888888 7777776665 7888888888888887 776663
Q ss_pred hhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCcccc-cc
Q 039861 278 TLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSL-KK 356 (557)
Q Consensus 278 ~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L-~~ 356 (557)
.++|++|++++|. +..++. ..+++|++|++++|......|..++.+++|+.|++.++...... ...+ ..
T Consensus 98 ----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~ 167 (317)
T 3o53_A 98 ----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN---FAELAAS 167 (317)
T ss_dssp ----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE---GGGGGGG
T ss_pred ----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc---HHHHhhc
Confidence 3788888888876 555553 34678888888888433333446777778888777665544311 1122 23
Q ss_pred CCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccC
Q 039861 357 LNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCE 436 (557)
Q Consensus 357 L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 436 (557)
++.|+.+.+++..-. . .+....+++|+.|++++|.+.. +|
T Consensus 168 l~~L~~L~L~~N~l~-~---------------------~~~~~~l~~L~~L~Ls~N~l~~--l~---------------- 207 (317)
T 3o53_A 168 SDTLEHLNLQYNFIY-D---------------------VKGQVVFAKLKTLDLSSNKLAF--MG---------------- 207 (317)
T ss_dssp TTTCCEEECTTSCCC-E---------------------EECCCCCTTCCEEECCSSCCCE--EC----------------
T ss_pred cCcCCEEECCCCcCc-c---------------------cccccccccCCEEECCCCcCCc--ch----------------
Confidence 455555555543211 0 0122235666666666665443 21
Q ss_pred CCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCcccee
Q 039861 437 HLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSL 516 (557)
Q Consensus 437 ~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 516 (557)
+.+..+++|++|+++++. ++.++.. +..+++|+.|++++++. .. ..++..+..+++|+.|
T Consensus 208 --~~~~~l~~L~~L~L~~N~-l~~l~~~------------~~~l~~L~~L~l~~N~~-~~----~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 208 --PEFQSAAGVTWISLRNNK-LVLIEKA------------LRFSQNLEHFDLRGNGF-HC----GTLRDFFSKNQRVQTV 267 (317)
T ss_dssp --GGGGGGTTCSEEECTTSC-CCEECTT------------CCCCTTCCEEECTTCCC-BH----HHHHHHHHTCHHHHHH
T ss_pred --hhhcccCcccEEECcCCc-ccchhhH------------hhcCCCCCEEEccCCCc-cC----cCHHHHHhccccceEE
Confidence 124556777777777753 5555433 23467777777777543 21 1224556677777777
Q ss_pred eeccCccccCCC
Q 039861 517 SIQSCPKLKALP 528 (557)
Q Consensus 517 ~l~~c~~l~~lp 528 (557)
++.+|+.++..+
T Consensus 268 ~l~~~~~l~~~~ 279 (317)
T 3o53_A 268 AKQTVKKLTGQN 279 (317)
T ss_dssp HHHHHHHHHSSS
T ss_pred ECCCchhccCCc
Confidence 777766666443
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4.3e-19 Score=186.56 Aligned_cols=259 Identities=21% Similarity=0.243 Sum_probs=169.5
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....+|..+ .++|+.|++++|.+. . +|. .+++|++|+| ++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l------~~~L~~L~L~~N~l~---~-lp~---~l~~L~~L~L-------s~N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL------PAHITTLVIPDNNLT---S-LPA---LPPELRTLEV-------SGNQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC------CTTCSEEEECSCCCS---C-CCC---CCTTCCEEEE-------CSCCCSCCCC-
T ss_pred CCCcEEEecCCCcCccChhh------CCCCcEEEecCCCCC---C-CCC---cCCCCCEEEc-------CCCcCCcCCC-
Confidence 35777888888777776654 367888888888743 2 343 5678888888 7788888886
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
.+.+|++|++++|. +..+|. .+++|++|++++|. +..+|.. +++|++|++++| .+..+|..+ .+|+
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~---~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELC 164 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCC---TTCC
T ss_pred --CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCcc---CCCC
Confidence 67888888888887 888876 67888888888876 7777764 478888888888 556666433 4455
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCC
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRG 414 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~ 414 (557)
.|++.++.... +. .. +++|+.|++++|.+
T Consensus 165 ~L~L~~N~l~~-----l~--~~--------------------------------------------~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 165 KLWAYNNQLTS-----LP--ML--------------------------------------------PSGLQELSVSDNQL 193 (622)
T ss_dssp EEECCSSCCSC-----CC--CC--------------------------------------------CTTCCEEECCSSCC
T ss_pred EEECCCCCCCC-----Cc--cc--------------------------------------------CCCCcEEECCCCCC
Confidence 55544433222 11 11 23444444444443
Q ss_pred cCCCCC--cccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccc
Q 039861 415 RRNVVP--KNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNME 492 (557)
Q Consensus 415 ~~~~~~--~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 492 (557)
.. +| +..+..|.+.+|. +..+|. .+++|++|++++|. ++.++ ..+++|+.|++++|
T Consensus 194 ~~--l~~~~~~L~~L~L~~N~-l~~l~~--~~~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~Ls~N- 251 (622)
T 3g06_A 194 AS--LPTLPSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGNR-LTSLP---------------VLPSELKELMVSGN- 251 (622)
T ss_dssp SC--CCCCCTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSS-
T ss_pred CC--CCCccchhhEEECcCCc-ccccCC--CCCCCCEEEccCCc-cCcCC---------------CCCCcCcEEECCCC-
Confidence 33 21 1112233333332 223443 34788888888753 44333 14678899999885
Q ss_pred cccccccccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCCcccc
Q 039861 493 ELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPILKER 551 (557)
Q Consensus 493 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 551 (557)
.++.+ |. .+++|+.|++++| .++.+|..+.++++|+.|++++|+.....
T Consensus 252 ~L~~l------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 252 RLTSL------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCSCC------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCcC------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 44433 33 5688999999988 57788888888889999999998765433
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.8e-19 Score=174.01 Aligned_cols=262 Identities=14% Similarity=0.101 Sum_probs=162.9
Q ss_pred ceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccchhhhcc
Q 039861 204 LRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLPETLCEL 282 (557)
Q Consensus 204 L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l 282 (557)
++..++..+. ....++..+..+++|++|+| ++|.+..++ ..++.+++|++|++++|. +..+++ +..+
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L-------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDL-------SGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL 79 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEEC-------TTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEEC-------cCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc
Confidence 4444555554 44445666777889999999 888888876 679999999999999998 777766 9999
Q ss_pred CcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCC
Q 039861 283 HNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRE 362 (557)
Q Consensus 283 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~ 362 (557)
++|++|++++|. +..+| ..++|++|++++| .+..++.. .+++|++|++..+......+. .+..+++|+.
T Consensus 80 ~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~ 148 (317)
T 3o53_A 80 STLRTLDLNNNY-VQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDL---DEGCRSRVQY 148 (317)
T ss_dssp TTCCEEECCSSE-EEEEE----ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCSGGGB---CTGGGSSEEE
T ss_pred CCCCEEECcCCc-ccccc----CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCCccch---hhhccCCCCE
Confidence 999999999987 66665 3489999999999 55555533 367778877766654432111 2233344444
Q ss_pred ceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcC-CCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCC
Q 039861 363 CTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEAL-GPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPL 441 (557)
Q Consensus 363 l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l 441 (557)
|++++..-... .+..+ ..+++|++|++++|.+.. ++..
T Consensus 149 L~Ls~N~l~~~--------------------~~~~~~~~l~~L~~L~L~~N~l~~---------------------~~~~ 187 (317)
T 3o53_A 149 LDLKLNEIDTV--------------------NFAELAASSDTLEHLNLQYNFIYD---------------------VKGQ 187 (317)
T ss_dssp EECTTSCCCEE--------------------EGGGGGGGTTTCCEEECTTSCCCE---------------------EECC
T ss_pred EECCCCCCCcc--------------------cHHHHhhccCcCCEEECCCCcCcc---------------------cccc
Confidence 44443221100 01111 234556666665554332 1233
Q ss_pred CCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccC
Q 039861 442 GKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSC 521 (557)
Q Consensus 442 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 521 (557)
..+++|++|+++++. ++.++.. +..+++|+.|+++++ .++. +|..+..+++|+.|++++|
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~~L~L~~N-~l~~------l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 188 VVFAKLKTLDLSSNK-LAFMGPE------------FQSAAGVTWISLRNN-KLVL------IEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCCTTCCEEECCSSC-CCEECGG------------GGGGTTCSEEECTTS-CCCE------ECTTCCCCTTCCEEECTTC
T ss_pred cccccCCEEECCCCc-CCcchhh------------hcccCcccEEECcCC-cccc------hhhHhhcCCCCCEEEccCC
Confidence 346677777777653 4444332 234667777777774 3333 2445666777777777777
Q ss_pred ccc-cCCCCCcCCCCCcceEEEecCCCcc
Q 039861 522 PKL-KALPDHLLQKSTLQKLEIWGCPILK 549 (557)
Q Consensus 522 ~~l-~~lp~~~~~l~~L~~L~l~~c~~l~ 549 (557)
+.. ..+|..+..+++|+.+++.+|+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CccCcCHHHHHhccccceEEECCCchhcc
Confidence 543 2455555556667777666554443
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=5.7e-20 Score=189.33 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=90.2
Q ss_pred CCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecc
Q 039861 188 ASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLK 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~ 267 (557)
..+|..+......+++|++|++++|. +....|..|..+++|++|+| ++|.+..+++ ++.+++|++|+++
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~-l~~l~~L~~L~Ls 88 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNL-------SSNVLYETLD-LESLSTLRTLDLN 88 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEEC-------TTSCCEEEEE-CTTCTTCCEEECC
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEe-------eCCCCCCCcc-cccCCCCCEEEec
Confidence 34444444433345578888888876 33445566777888888888 7777766554 7778888888888
Q ss_pred cCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecC
Q 039861 268 SQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGG 343 (557)
Q Consensus 268 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~ 343 (557)
+|. +..+|. .++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|+.|++.++..
T Consensus 89 ~N~-l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 89 NNY-VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp SSE-EEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred CCc-CCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 776 776663 2778888888766 555543 2467788888887744444455667777777776655543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=7.4e-20 Score=181.11 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=180.9
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++.. .+.++++|++|++++|. +....|..|.++++|++|++ ++|.++.+|..
T Consensus 52 ~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~ 118 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS---DLQRCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDL-------SYNYLSNLSSS 118 (353)
T ss_dssp TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEEC-------CSSCCSSCCHH
T ss_pred ccCcEEECCCCcCcccCHH---HhccCCCCCEEECCCCc---cCccCHhhcCCCCCCCEEEC-------CCCcCCcCCHh
Confidence 5799999988887766543 34459999999999998 44555677999999999999 89999999876
Q ss_pred -hhcccCCCeeecccCCcccccch--hhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCcccccccCc
Q 039861 255 -IEKLLHLKYLNLKSQNKIEKLPE--TLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYLPVGIGEL 330 (557)
Q Consensus 255 -~~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L 330 (557)
++++++|++|++++|. +..+|. .+..+++|++|++++|..+..++ ..++++++|++|++++|......|..++.+
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 8999999999999998 889986 78999999999999986577664 578999999999999996555558889999
Q ss_pred ccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEe
Q 039861 331 IRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIY 410 (557)
Q Consensus 331 ~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~ 410 (557)
++|++|++..+...... ......+++|+.+++++..-..... ..+......+.++.+++.
T Consensus 198 ~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~-----------------~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 198 QNVSHLILHMKQHILLL---EIFVDVTSSVECLELRDTDLDTFHF-----------------SELSTGETNSLIKKFTFR 257 (353)
T ss_dssp SEEEEEEEECSCSTTHH---HHHHHHTTTEEEEEEESCBCTTCCC-----------------C------CCCCCCEEEEE
T ss_pred ccCCeecCCCCccccch---hhhhhhcccccEEECCCCccccccc-----------------cccccccccchhhccccc
Confidence 99999998877653211 1123346677777777643211100 001112335667778777
Q ss_pred ecCCcCCCCCcccccCccccCccccCCCC-CCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccc
Q 039861 411 DYRGRRNVVPKNWIMDLSLFRCRNCEHLP-PLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFR 489 (557)
Q Consensus 411 ~~~~~~~~~~~~~l~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 489 (557)
++.+.. + ....+| .+..+++|++|+++++. ++.++... +..+++|++|+++
T Consensus 258 ~~~l~~---------------~-~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~-----------~~~l~~L~~L~L~ 309 (353)
T 2z80_A 258 NVKITD---------------E-SLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGI-----------FDRLTSLQKIWLH 309 (353)
T ss_dssp SCBCCH---------------H-HHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTT-----------TTTCTTCCEEECC
T ss_pred cccccC---------------c-chhhhHHHHhcccCCCEEECCCCC-CCccCHHH-----------HhcCCCCCEEEee
Confidence 664332 1 111122 25567788888887754 44444332 1356777777777
Q ss_pred ccc
Q 039861 490 NME 492 (557)
Q Consensus 490 ~~~ 492 (557)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=3.7e-19 Score=170.47 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=87.7
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcccCCCeeecccCCccccc-chh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKLLHLKYLNLKSQNKIEKL-PET 278 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~ 278 (557)
.+.|+.|+++++.+ ....+..|..+++|++|++ +++.+..+ |..++.+++|++|++++|..+..+ |..
T Consensus 31 ~~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l-------~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRI---SHVPAASFRACRNLTILWL-------HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CTTCSEEECTTSCC---CEECTTTTTTCTTCCEEEC-------CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CCCceEEEeeCCcC---CccCHHHcccCCCCCEEEC-------CCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 45677888877763 3334455777788888888 77777766 566777888888888877546666 566
Q ss_pred hhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccc-cccCcccccccCceEe
Q 039861 279 LCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPV-GIGELIRLRRVTKLVV 341 (557)
Q Consensus 279 ~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~ 341 (557)
+..+++|++|++++|......|..+.++++|++|++++| .+..+|. .++.+++|++|++.++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC
Confidence 777888888888877633333555677888888888877 4444443 3566666666655444
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=3.9e-18 Score=163.36 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=49.8
Q ss_pred CCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccC-ccccc
Q 039861 228 LTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLREL-PRGIG 304 (557)
Q Consensus 228 l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l-p~~i~ 304 (557)
.++|++|++ +++.+..+| ..++.+++|++|++++|. +..+ |..+..+++|++|++++|..+..+ |..+.
T Consensus 31 ~~~l~~L~l-------~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFL-------HGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEEC-------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEe-------eCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 346666666 666666555 346666666666666665 5544 455666666666666665544444 44556
Q ss_pred CCCCCcEeecCCC
Q 039861 305 KLRKLMYIDNDDT 317 (557)
Q Consensus 305 ~L~~L~~L~l~~~ 317 (557)
.+++|++|++++|
T Consensus 103 ~l~~L~~L~l~~n 115 (285)
T 1ozn_A 103 GLGRLHTLHLDRC 115 (285)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCcCCCEEECCCC
Confidence 6666666666666
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1e-17 Score=176.03 Aligned_cols=237 Identities=20% Similarity=0.175 Sum_probs=166.7
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.|.+..+.+..+|. . +++|++|++++|.+. . +|. .+++|++|++ ++|.+..+|.
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~----l~~L~~L~Ls~N~l~---~-lp~---~l~~L~~L~L-------s~N~l~~l~~- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---L----PPELRTLEVSGNQLT---S-LPV---LPPGLLELSI-------FSNPLTHLPA- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---C----CTTCCEEEECSCCCS---C-CCC---CCTTCCEEEE-------CSCCCCCCCC-
T ss_pred CCCcEEEecCCCCCCCCC---c----CCCCCEEEcCCCcCC---c-CCC---CCCCCCEEEC-------cCCcCCCCCC-
Confidence 689999999998887765 2 789999999999843 3 444 6899999999 8899999987
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
.+.+|++|++++|. +..+|.. +++|++|++++|. +..+|. .+.+|+.|++++| .++.+| ..+++|+
T Consensus 119 --~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~ 184 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQ 184 (622)
T ss_dssp --CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCC
T ss_pred --CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCC-CCCCCc---ccCCCCc
Confidence 67899999999998 9999974 5899999999986 778875 3578999999998 677787 4467888
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCC
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRG 414 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~ 414 (557)
.|++.++.... +.. .+++|+.|.+.+..-. . ++ ..+++|+.|++++|.+
T Consensus 185 ~L~Ls~N~l~~-----l~~--~~~~L~~L~L~~N~l~-~--------------------l~---~~~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 185 ELSVSDNQLAS-----LPT--LPSELYKLWAYNNRLT-S--------------------LP---ALPSGLKELIVSGNRL 233 (622)
T ss_dssp EEECCSSCCSC-----CCC--CCTTCCEEECCSSCCS-S--------------------CC---CCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCC-----CCC--ccchhhEEECcCCccc-c--------------------cC---CCCCCCCEEEccCCcc
Confidence 88877665432 111 1234555555443111 0 00 1235677777777654
Q ss_pred cCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccc
Q 039861 415 RRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEEL 494 (557)
Q Consensus 415 ~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 494 (557)
.. +| ..+++|++|++++|. ++.++. .+++|+.|++++| .+
T Consensus 234 ~~---------------------lp--~~l~~L~~L~Ls~N~-L~~lp~---------------~~~~L~~L~Ls~N-~L 273 (622)
T 3g06_A 234 TS---------------------LP--VLPSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRN-QL 273 (622)
T ss_dssp SC---------------------CC--CCCTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCSS-CC
T ss_pred Cc---------------------CC--CCCCcCcEEECCCCC-CCcCCc---------------ccccCcEEeCCCC-CC
Confidence 43 33 345677777777753 433332 3567777887775 33
Q ss_pred cccccccccccccccCCccceeeeccCccc
Q 039861 495 EEWDCGTAIKGEIIIMPRLSSLSIQSCPKL 524 (557)
Q Consensus 495 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 524 (557)
+ .+|..+..+++|+.|++++|+..
T Consensus 274 ~------~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 274 T------RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp C------SCCGGGGGSCTTCEEECCSCCCC
T ss_pred C------cCCHHHhhccccCEEEecCCCCC
Confidence 3 23556777788888888887643
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.4e-19 Score=175.63 Aligned_cols=245 Identities=18% Similarity=0.184 Sum_probs=139.8
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccc--cchhhh-------cccCCCeeecccCCc
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE--IPTNIE-------KLLHLKYLNLKSQNK 271 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~--lp~~~~-------~l~~L~~L~L~~~~~ 271 (557)
.++|+.+++.+|.+ .+|..+... |++|+| +++.+.. +|..+. ++.+|++|++++|.
T Consensus 42 ~~~L~~l~l~~n~l-----~~p~~~~~~--L~~L~L-------~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~- 106 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-----ADLGQFTDI--IKSLSL-------KRLTVRAARIPSRILFGALRVLGISGLQELTLENLE- 106 (312)
T ss_dssp EEECTTHHHHCCTT-----CCCHHHHHH--HHHCCC-------CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-
T ss_pred CCCceeEeeccccc-----ccHHHHHHH--Hhhccc-------ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-
Confidence 45566666666653 234434333 667777 6666543 555554 57777777777777
Q ss_pred cc-ccchhh--hccCcCcEeecCCccccccCcccccCC-----CCCcEeecCCCCCCCcccccccCcccccccCceEecC
Q 039861 272 IE-KLPETL--CELHNLERLNVDDCENLRELPRGIGKL-----RKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGG 343 (557)
Q Consensus 272 l~-~lp~~~--~~l~~L~~L~l~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~ 343 (557)
+. .+|..+ +.+++|++|++++|. +..+|..++.+ ++|++|++++|......|..++.+++|++|++.++..
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 44 566655 677777777777766 55556666665 7777777777743333335566666666665544432
Q ss_pred ccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcC--CCCCCccEEEEeecCCcCCCCCc
Q 039861 344 GYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEAL--GPPPNLKKLQIYDYRGRRNVVPK 421 (557)
Q Consensus 344 ~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~ 421 (557)
... ...+..+ ..+++|++|++++|.+.. ++
T Consensus 186 ~~~---------------------------------------------~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~- 217 (312)
T 1wwl_A 186 LGE---------------------------------------------RGLISALCPLKFPTLQVLALRNAGMET--PS- 217 (312)
T ss_dssp CHH---------------------------------------------HHHHHHSCTTSCTTCCEEECTTSCCCC--HH-
T ss_pred Ccc---------------------------------------------hHHHHHHHhccCCCCCEEECCCCcCcc--hH-
Confidence 110 0011111 345566666666665432 10
Q ss_pred ccccCccccCccccCCCC-C-CCCCCCcCeeeeccccCceEec-ccccCCCCCCCCcccccccccccccccccccccccc
Q 039861 422 NWIMDLSLFRCRNCEHLP-P-LGKLPSLEYLEIEGMQSVKRVG-NEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWD 498 (557)
Q Consensus 422 ~~l~~L~l~~~~~~~~l~-~-l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 498 (557)
.++ . +..+++|++|+++++. ++..+ .. ....+++|+.|+++++. ++.
T Consensus 218 ---------------~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~~l~~L~~L~Ls~N~-l~~-- 267 (312)
T 1wwl_A 218 ---------------GVCSALAAARVQLQGLDLSHNS-LRDAAGAP-----------SCDWPSQLNSLNLSFTG-LKQ-- 267 (312)
T ss_dssp ---------------HHHHHHHHTTCCCSEEECTTSC-CCSSCCCS-----------CCCCCTTCCEEECTTSC-CSS--
T ss_pred ---------------HHHHHHHhcCCCCCEEECCCCc-CCcccchh-----------hhhhcCCCCEEECCCCc-cCh--
Confidence 000 0 1245666666666643 22111 00 02235677777777743 332
Q ss_pred cccccccccccCCccceeeeccCccccCCCCCcCCCCCcceEEEecCCC
Q 039861 499 CGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 499 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 547 (557)
+|..+. ++|++|++++| .++.+|. +..+++|++|++++|+-
T Consensus 268 ----ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 268 ----VPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ----CCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred ----hhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 244443 78888888888 5777776 66788888888888864
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=171.38 Aligned_cols=147 Identities=20% Similarity=0.323 Sum_probs=109.2
Q ss_pred EEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hhhh
Q 039861 178 RHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIE 256 (557)
Q Consensus 178 r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~ 256 (557)
+.+.........+|..+ .++++.|++++|. +....+..|.++++|++|+| ++|.+..++ ..+.
T Consensus 46 ~~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L-------s~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI------STNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQL-------SRNHIRTIEIGAFN 109 (440)
T ss_dssp CEEECCSCCCSSCCSCC------CTTCSEEECCSCC---CCEECTTTTSSCSSCCEEEC-------CSSCCCEECGGGGT
T ss_pred CEEEeCCCCcCcCCCCC------CCCCcEEEccCCc---CCeeCHHHhhCCCCCCEEEC-------CCCcCCccChhhcc
Confidence 34444455555666544 3578888888887 44444566888899999999 888888776 6688
Q ss_pred cccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCCcccc-cccCcccc
Q 039861 257 KLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLRYLPV-GIGELIRL 333 (557)
Q Consensus 257 ~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L 333 (557)
++.+|++|+|++|. +..+|. .+..+++|++|++++|. +..+|. .+.++++|++|++++|..+..++. .+..+++|
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 110 GLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp TCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred CCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 88999999999887 888874 58888999999999877 666654 578889999999988777777665 46667777
Q ss_pred cccCceEec
Q 039861 334 RRVTKLVVG 342 (557)
Q Consensus 334 ~~L~~~~~~ 342 (557)
+.|++..+.
T Consensus 188 ~~L~L~~n~ 196 (440)
T 3zyj_A 188 RYLNLAMCN 196 (440)
T ss_dssp CEEECTTSC
T ss_pred CeecCCCCc
Confidence 777665443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2.8e-18 Score=176.72 Aligned_cols=242 Identities=14% Similarity=0.123 Sum_probs=144.7
Q ss_pred hHHHHhcCC----ceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccc
Q 039861 221 LPQLFDKLT----CLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCEN 295 (557)
Q Consensus 221 ~p~~~~~l~----~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 295 (557)
+|..+..+. +|++|+| ++|.+..+| ..++.+++|++|+|++|. +..+++ ++.+++|++|++++|.
T Consensus 22 l~~~l~~l~~~~~~L~~L~L-------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~- 91 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDL-------SGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY- 91 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEEC-------CSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-
T ss_pred hHHHHHHhcccCCCccEEEe-------eCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-
Confidence 566665554 8999999 888888875 689999999999999998 776665 9999999999999986
Q ss_pred cccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChh
Q 039861 296 LRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAG 375 (557)
Q Consensus 296 l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~ 375 (557)
+..+|. .++|++|++++| .+..++.. .+++|+.|++.++......+. .+..+++|+.|++++..-..
T Consensus 92 l~~l~~----~~~L~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~--- 158 (487)
T 3oja_A 92 VQELLV----GPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDT--- 158 (487)
T ss_dssp EEEEEE----CTTCCEEECCSS-CCCCEEEC--CCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCE---
T ss_pred CCCCCC----CCCcCEEECcCC-cCCCCCcc--ccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCC---
Confidence 776664 389999999999 45555432 456777777766554432111 22233344444444321110
Q ss_pred HHHHhhccCCCCCchHHhhhhcCC-CCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeecc
Q 039861 376 EARRAELEKKKNLDEDERLLEALG-PPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEG 454 (557)
Q Consensus 376 ~~~~~~l~~l~~l~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~ 454 (557)
..+..+. .+++|+.|++++|.+.. +|....+++|++|++++
T Consensus 159 -----------------~~~~~l~~~l~~L~~L~Ls~N~l~~---------------------~~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 159 -----------------VNFAELAASSDTLEHLNLQYNFIYD---------------------VKGQVVFAKLKTLDLSS 200 (487)
T ss_dssp -----------------EEGGGGGGGTTTCCEEECTTSCCCE---------------------EECCCCCTTCCEEECCS
T ss_pred -----------------cChHHHhhhCCcccEEecCCCcccc---------------------ccccccCCCCCEEECCC
Confidence 0111111 34455555555544332 12233456666666665
Q ss_pred ccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccc-cCCCCCcCC
Q 039861 455 MQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKL-KALPDHLLQ 533 (557)
Q Consensus 455 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~ 533 (557)
+. ++.++.. +..+++|+.|+++++. +.. +|..+..+++|+.|++++|+.. ..+|..+..
T Consensus 201 N~-l~~~~~~------------~~~l~~L~~L~Ls~N~-l~~------lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 201 NK-LAFMGPE------------FQSAAGVTWISLRNNK-LVL------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp SC-CCEECGG------------GGGGTTCSEEECTTSC-CCE------ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred CC-CCCCCHh------------HcCCCCccEEEecCCc-Ccc------cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 43 3333332 2245666666666632 322 2445555666666666666533 244444444
Q ss_pred CCCcceEEEe
Q 039861 534 KSTLQKLEIW 543 (557)
Q Consensus 534 l~~L~~L~l~ 543 (557)
++.|+.+++.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 5555555554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=9e-18 Score=171.86 Aligned_cols=147 Identities=21% Similarity=0.338 Sum_probs=110.8
Q ss_pred EEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-hhhh
Q 039861 178 RHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIE 256 (557)
Q Consensus 178 r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~ 256 (557)
+.+.........+|..+ .++++.|++++|. +....|..|.++++|++|+| ++|.+..++ ..+.
T Consensus 57 ~~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L-------s~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI------PSNTRYLNLMENN---IQMIQADTFRHLHHLEVLQL-------GRNSIRQIEVGAFN 120 (452)
T ss_dssp CEEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCEECTTTTTTCTTCCEEEC-------CSSCCCEECTTTTT
T ss_pred cEEEECCCCcCccCCCC------CCCccEEECcCCc---CceECHHHcCCCCCCCEEEC-------CCCccCCcChhhcc
Confidence 34444444555556543 3578899999887 44445677888999999999 888888776 6788
Q ss_pred cccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCCccccc-ccCcccc
Q 039861 257 KLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLRYLPVG-IGELIRL 333 (557)
Q Consensus 257 ~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L 333 (557)
++.+|++|+|++|. +..+|. .+..+++|++|++++|. +..+|. .+.++++|++|++++|..+..++.. +..+++|
T Consensus 121 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 121 GLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 89999999999988 888774 47889999999999977 666664 5788999999999987777777653 6677777
Q ss_pred cccCceEec
Q 039861 334 RRVTKLVVG 342 (557)
Q Consensus 334 ~~L~~~~~~ 342 (557)
+.|++..+.
T Consensus 199 ~~L~L~~n~ 207 (452)
T 3zyi_A 199 KYLNLGMCN 207 (452)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 777665543
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=9.9e-18 Score=162.30 Aligned_cols=228 Identities=19% Similarity=0.152 Sum_probs=169.3
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++...+ .++++|++|++++|.+..... .|..+..+++|++|++ ++|.+..+|..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~---~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~L-------s~n~i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVF---DKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDL-------SFNGVITMSSN 96 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTT---TTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEEC-------CSCSEEEEEEE
T ss_pred CCCCEEECCCCccCccCHhHh---hccccCCEEECCCCccCcccC-cccccccccccCEEEC-------CCCccccChhh
Confidence 679999999988887776543 359999999999998543222 3556778999999999 99999999999
Q ss_pred hhcccCCCeeecccCCcccccch--hhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCC-cccccccCcc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPE--TLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLR-YLPVGIGELI 331 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~-~~p~~i~~L~ 331 (557)
+..+++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++++|.... .+|..++.++
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 9999999999999998 888764 78999999999999988555666778999999999999994333 4788899999
Q ss_pred cccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEee
Q 039861 332 RLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYD 411 (557)
Q Consensus 332 ~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~ 411 (557)
+|+.|++.++......+ ..+..+++|+.+.+++..-... ....+..+++|+.|++++
T Consensus 176 ~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~--------------------~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSP---TAFNSLSSLQVLNMSHNNFFSL--------------------DTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp TCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCSBC--------------------CSGGGTTCTTCCEEECTT
T ss_pred CCCEEECCCCCcCCcCH---HHhcCCCCCCEEECCCCccCcc--------------------ChhhccCcccCCEeECCC
Confidence 99999887766544222 2344555666666665422110 012345567788888877
Q ss_pred cCCcCCCCCcccccCccccCccccCCCCCCCCCC-CcCeeeecccc
Q 039861 412 YRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLP-SLEYLEIEGMQ 456 (557)
Q Consensus 412 ~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~-~L~~L~l~~~~ 456 (557)
|.+.. .++ ..+..++ +|++|++++++
T Consensus 233 N~l~~--~~~-----------------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 233 NHIMT--SKK-----------------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCB--CSS-----------------SSCCCCCTTCCEEECTTCC
T ss_pred CCCcc--cCH-----------------HHHHhhhccCCEEEccCCC
Confidence 76544 211 1255664 89999998854
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=8.6e-19 Score=170.12 Aligned_cols=223 Identities=17% Similarity=0.176 Sum_probs=157.3
Q ss_pred ceEEEeccCCccchhhhhHHHHh-------cCCceeEEEeccccCCCCcCccc-ccchhh--hcccCCCeeecccCCccc
Q 039861 204 LRSFLVKSDEYSWSSEVLPQLFD-------KLTCLRALNLKVRKPWSSVNDIK-EIPTNI--EKLLHLKYLNLKSQNKIE 273 (557)
Q Consensus 204 L~~L~l~~~~~~~~~~~~p~~~~-------~l~~L~~L~L~~~~~~~~~~~l~-~lp~~~--~~l~~L~~L~L~~~~~l~ 273 (557)
|+.|++.+|.+... .+|..+. ++++|++|++ ++|.+. .+|..+ +.+++|++|++++|. +.
T Consensus 65 L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 134 (312)
T 1wwl_A 65 IKSLSLKRLTVRAA--RIPSRILFGALRVLGISGLQELTL-------ENLEVTGTAPPPLLEATGPDLNILNLRNVS-WA 134 (312)
T ss_dssp HHHCCCCEEEEEEE--ECBHHHHHHHHHHHTTSCCCEEEE-------EEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CS
T ss_pred HhhcccccccccCC--CcCHHHHHHHHHhcCcCCccEEEc-------cCCcccchhHHHHHHhcCCCccEEEccCCC-Cc
Confidence 77788888775322 2344343 7999999999 888887 678776 899999999999998 88
Q ss_pred ccchhhhcc-----CcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCc--ccccc--cCcccccccCceEecC
Q 039861 274 KLPETLCEL-----HNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRY--LPVGI--GELIRLRRVTKLVVGG 343 (557)
Q Consensus 274 ~lp~~~~~l-----~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~p~~i--~~L~~L~~L~~~~~~~ 343 (557)
.+|..++.+ ++|++|++++|. +..+| ..++++++|++|++++|..... +|..+ +.+++|++|++.++..
T Consensus 135 ~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 135 TRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred chhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 889888888 999999999988 55555 7899999999999999954433 23333 5566666655433221
Q ss_pred ccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCccc
Q 039861 344 GYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNW 423 (557)
Q Consensus 344 ~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 423 (557)
. .... .....+..+++|+.|++++|.+.. .+
T Consensus 214 ~----------------------------~~~~----------------~~~~~~~~l~~L~~L~Ls~N~l~~--~~--- 244 (312)
T 1wwl_A 214 E----------------------------TPSG----------------VCSALAAARVQLQGLDLSHNSLRD--AA--- 244 (312)
T ss_dssp C----------------------------CHHH----------------HHHHHHHTTCCCSEEECTTSCCCS--SC---
T ss_pred c----------------------------chHH----------------HHHHHHhcCCCCCEEECCCCcCCc--cc---
Confidence 1 1000 001122346789999999887655 21
Q ss_pred ccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccccccccccccccc
Q 039861 424 IMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAI 503 (557)
Q Consensus 424 l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 503 (557)
..+.+..+++|++|+++++. ++.++.. .+++|+.|+++++ .++.+
T Consensus 245 -------------~~~~~~~l~~L~~L~Ls~N~-l~~ip~~--------------~~~~L~~L~Ls~N-~l~~~------ 289 (312)
T 1wwl_A 245 -------------GAPSCDWPSQLNSLNLSFTG-LKQVPKG--------------LPAKLSVLDLSYN-RLDRN------ 289 (312)
T ss_dssp -------------CCSCCCCCTTCCEEECTTSC-CSSCCSS--------------CCSEEEEEECCSS-CCCSC------
T ss_pred -------------chhhhhhcCCCCEEECCCCc-cChhhhh--------------ccCCceEEECCCC-CCCCC------
Confidence 12335568899999999865 4444332 1279999999995 44433
Q ss_pred ccccccCCccceeeeccCc
Q 039861 504 KGEIIIMPRLSSLSIQSCP 522 (557)
Q Consensus 504 ~~~~~~l~~L~~L~l~~c~ 522 (557)
|. +..+++|++|++++|+
T Consensus 290 p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 290 PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CC-TTTSCEEEEEECTTCT
T ss_pred hh-HhhCCCCCEEeccCCC
Confidence 44 7789999999999996
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=7.6e-17 Score=154.30 Aligned_cols=97 Identities=24% Similarity=0.300 Sum_probs=51.5
Q ss_pred hcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCccccc
Q 039861 226 DKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELPRGIG 304 (557)
Q Consensus 226 ~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~i~ 304 (557)
.++++++.+++ +++.++.+|..+. .++++|++++|. +..+ |..+..+++|++|++++|. +..+|.. +
T Consensus 7 ~~l~~l~~l~~-------~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~ 74 (290)
T 1p9a_G 7 SKVASHLEVNC-------DKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-G 74 (290)
T ss_dssp ECSTTCCEEEC-------TTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-S
T ss_pred cccCCccEEEC-------CCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-C
Confidence 34555666666 5555556655443 456666666665 4444 3455666666666666654 4454432 5
Q ss_pred CCCCCcEeecCCCCCCCcccccccCcccccc
Q 039861 305 KLRKLMYIDNDDTDSLRYLPVGIGELIRLRR 335 (557)
Q Consensus 305 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 335 (557)
.+++|++|++++| .+..+|..+..+++|+.
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTV 104 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCCTTTCTTCCE
T ss_pred CCCcCCEEECCCC-cCCcCchhhccCCCCCE
Confidence 5666666666655 33444443333333333
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=6.6e-17 Score=150.44 Aligned_cols=211 Identities=20% Similarity=0.209 Sum_probs=131.0
Q ss_pred ccccchhhhcccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCCcccc
Q 039861 248 IKEIPTNIEKLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLRYLPV 325 (557)
Q Consensus 248 l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~ 325 (557)
++.+|. +. .+|++|++++|. ++.+|. .+..+++|++|++++|..+..+|. .+.++++|++|++++|+.++.+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555665 32 267777777776 666654 566777777777777654555554 466777777777776225555553
Q ss_pred -cccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCc
Q 039861 326 -GIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNL 404 (557)
Q Consensus 326 -~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L 404 (557)
.++.+++|++|++..+.... ++.+..++ .+..|
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-----lp~~~~l~-----------------------------------------~L~~L 132 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-----FPDLTKVY-----------------------------------------STDIF 132 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-----CCCCTTCC-----------------------------------------BCCSE
T ss_pred HHhCCCCCCCEEeCCCCCCcc-----cccccccc-----------------------------------------ccccc
Confidence 45666666666666554322 00011111 11124
Q ss_pred cEEEEeec-CCcCCCCCcccccCccccCccccCCCCCCCCCCCcC-eeeeccccCceEecccccCCCCCCCCcccccccc
Q 039861 405 KKLQIYDY-RGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLE-YLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPK 482 (557)
Q Consensus 405 ~~L~l~~~-~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 482 (557)
+.|++++| .+.. +++ ..+..+++|+ +|+++++. ++.++...+ ..++
T Consensus 133 ~~L~l~~N~~l~~--i~~-----------------~~~~~l~~L~~~L~l~~n~-l~~i~~~~~------------~~~~ 180 (239)
T 2xwt_C 133 FILEITDNPYMTS--IPV-----------------NAFQGLCNETLTLKLYNNG-FTSVQGYAF------------NGTK 180 (239)
T ss_dssp EEEEEESCTTCCE--ECT-----------------TTTTTTBSSEEEEECCSCC-CCEECTTTT------------TTCE
T ss_pred cEEECCCCcchhh--cCc-----------------ccccchhcceeEEEcCCCC-CcccCHhhc------------CCCC
Confidence 47888777 4333 211 1256788899 99998754 556654322 1268
Q ss_pred cccccccccccccccccccccccccccC-CccceeeeccCccccCCCCCcCCCCCcceEEEecCCCc
Q 039861 483 LKKLEFRNMEELEEWDCGTAIKGEIIIM-PRLSSLSIQSCPKLKALPDHLLQKSTLQKLEIWGCPIL 548 (557)
Q Consensus 483 L~~L~l~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 548 (557)
|+.|+++++..++.++. ..+..+ ++|+.|++++| .++.+|.. .+++|+.|++.+|..|
T Consensus 181 L~~L~L~~n~~l~~i~~-----~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDK-----DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEECTTCTTCCEECT-----TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCEEEcCCCCCcccCCH-----HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 99999998755665542 456778 99999999998 58888875 4789999999998764
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=7.1e-17 Score=156.07 Aligned_cols=100 Identities=16% Similarity=0.303 Sum_probs=54.1
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+++|++|.+.++.+.. +| .+..+++|++|++ ++|.+..+|. ++.+++|++|++++|. +..+| .+.
T Consensus 40 l~~L~~L~l~~~~i~~----l~-~~~~l~~L~~L~L-------~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~ 104 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT----IE-GVQYLNNLIGLEL-------KDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIA 104 (308)
T ss_dssp HHTCCEEECTTSCCCC----CT-TGGGCTTCCEEEC-------CSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGT
T ss_pred cCCcCEEEeeCCCccC----ch-hhhccCCCCEEEc-------cCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhc
Confidence 5555555555554221 22 2455555666666 5555555554 5555556666665555 55554 255
Q ss_pred ccCcCcEeecCCccccccCcccccCCCCCcEeecCCC
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDT 317 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 317 (557)
.+++|++|++++|. +..+|. +..+++|++|++++|
T Consensus 105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN 139 (308)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC
Confidence 55556666665554 444443 555555555555555
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.1e-18 Score=185.27 Aligned_cols=318 Identities=16% Similarity=0.105 Sum_probs=143.7
Q ss_pred CCcceEEEeccCCccchh-hhhHHHHhcCCceeEEEeccccCCCCcCccc-----ccchhhhcccCCCeeecccCCcccc
Q 039861 201 LRGLRSFLVKSDEYSWSS-EVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-----EIPTNIEKLLHLKYLNLKSQNKIEK 274 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-----~lp~~~~~l~~L~~L~L~~~~~l~~ 274 (557)
+++|++|++.+|.+.... ..++..+..++.|++|++ +++.+. .++..+.++++|++|++++|. +..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L-------~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~ 234 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF-------YMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILE 234 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEEC-------TTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEe-------eccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHH
Confidence 666777776666532111 113444556666677766 444443 344445566677777777666 666
Q ss_pred cchhhhccCcCcEeecCCcccc---ccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCc
Q 039861 275 LPETLCELHNLERLNVDDCENL---RELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSL 351 (557)
Q Consensus 275 lp~~~~~l~~L~~L~l~~~~~l---~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l 351 (557)
+|..+.++++|++|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++..+.... ....
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~--~~~~ 311 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLET--EDHC 311 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCH--HHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCH--HHHH
Confidence 6666666667776666643221 122233444445555555443 233344444444555555444333211 0000
Q ss_pred cccccCCcCCCceecCCCCCCChh-HHHHhhccCCCCCchH-----------------HhhhhcCCCCCCccEEEEeecC
Q 039861 352 GSLKKLNLLRECTIRGLGGVSDAG-EARRAELEKKKNLDED-----------------ERLLEALGPPPNLKKLQIYDYR 413 (557)
Q Consensus 352 ~~L~~L~~L~~l~i~~~~~~~~~~-~~~~~~l~~l~~l~~~-----------------~~~~~~l~~~~~L~~L~l~~~~ 413 (557)
..+..+++|+.|.+.. .+.+.. ......+.+++.+... .........+++|++|++..+.
T Consensus 312 ~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 312 TLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 1123333344433331 000000 0000111111111111 0011111234566666664443
Q ss_pred CcCCCC-----CcccccCccccC---ccccCCCCC-------CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccc
Q 039861 414 GRRNVV-----PKNWIMDLSLFR---CRNCEHLPP-------LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVI 478 (557)
Q Consensus 414 ~~~~~~-----~~~~l~~L~l~~---~~~~~~l~~-------l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 478 (557)
+....+ ....++.|++.+ |..++..|. +..+++|++|+++.|... +........ ..
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~--l~~~~~~~~-------~~ 460 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG--LTDLGLSYI-------GQ 460 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG--CCHHHHHHH-------HH
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC--ccHHHHHHH-------HH
Confidence 321000 001133445542 223333221 334677777777654420 101000000 12
Q ss_pred cccccccccccccccccccccccccccccccCCccceeeeccCccccC--CCCCcCCCCCcceEEEecCC
Q 039861 479 AFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKA--LPDHLLQKSTLQKLEIWGCP 546 (557)
Q Consensus 479 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~ 546 (557)
.+++|+.|++++|. +... .++..+..+++|++|++++|+ ++. ++.....+++|++|++++|+
T Consensus 461 ~~~~L~~L~L~~n~-l~~~----~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDE----GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHH----HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHH----HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 36777788777754 3221 123344567888888888886 431 33333346788888888887
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=4.8e-19 Score=182.11 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=87.5
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccch-hhhhHHHHhcCCceeEEEeccccCCCCcCccccc-c
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWS-SEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-P 252 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p 252 (557)
..++.+.+..+.....+ ....+..+++|++|++++|.+... ...++..+..+++|++|++ +++.+... +
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L-------s~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL-------RSNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC-------TTCCCHHHHH
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC-------CCCcCChHHH
Confidence 45666666665554322 111133367777777777764321 1235566667777777777 66655432 2
Q ss_pred hhh-hccc----CCCeeecccCCccc-----ccchhhhccCcCcEeecCCccccccCcccc-----cCCCCCcEeecCCC
Q 039861 253 TNI-EKLL----HLKYLNLKSQNKIE-----KLPETLCELHNLERLNVDDCENLRELPRGI-----GKLRKLMYIDNDDT 317 (557)
Q Consensus 253 ~~~-~~l~----~L~~L~L~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i-----~~L~~L~~L~l~~~ 317 (557)
..+ ..+. +|++|++++|. +. .+|..+..+++|++|++++|......+..+ ...++|++|++++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 222 2344 57777777776 54 356667777777777777766222222222 22456777777777
Q ss_pred CCCC----cccccccCcccccccCceEecC
Q 039861 318 DSLR----YLPVGIGELIRLRRVTKLVVGG 343 (557)
Q Consensus 318 ~~l~----~~p~~i~~L~~L~~L~~~~~~~ 343 (557)
.... .++..+..+++|++|++.++..
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 3222 1234455566677766665543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.9e-16 Score=146.75 Aligned_cols=76 Identities=30% Similarity=0.489 Sum_probs=44.8
Q ss_pred eeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCcccc-cCCCC
Q 039861 231 LRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPRGI-GKLRK 308 (557)
Q Consensus 231 L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~i-~~L~~ 308 (557)
.+.+++ +++.++.+|..+. .+|++|++++|. +..+|. .+.++++|++|++++|. +..+|..+ .++++
T Consensus 18 ~~~l~~-------~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 18 KNSVDC-------SSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKN 86 (270)
T ss_dssp TTEEEC-------TTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTT
T ss_pred CCEEEc-------cCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCC
Confidence 455666 5556666665443 456666666666 555552 46666666666666654 55555443 55666
Q ss_pred CcEeecCCC
Q 039861 309 LMYIDNDDT 317 (557)
Q Consensus 309 L~~L~l~~~ 317 (557)
|++|++++|
T Consensus 87 L~~L~l~~n 95 (270)
T 2o6q_A 87 LETLWVTDN 95 (270)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 666666666
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=5.1e-18 Score=166.73 Aligned_cols=237 Identities=14% Similarity=0.157 Sum_probs=124.0
Q ss_pred CceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccc--cchhhhccCcCcEeecCCccccccCcccccCC
Q 039861 229 TCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEK--LPETLCELHNLERLNVDDCENLRELPRGIGKL 306 (557)
Q Consensus 229 ~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L 306 (557)
+++++|++ +++.+...+..+..+.+|++|++++|. +.. +|..+..+++|++|++++|......|..++++
T Consensus 70 ~~l~~L~l-------~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRC-------PRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp TTCSEEEC-------TTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred ccceEEEc-------CCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 55566666 555555444445555666666666555 432 45555556666666666654333444555556
Q ss_pred CCCcEeecCCCCCCC--cccccccCcccccccCceEe-cCccCCccCccccccCC-cCCCceecCCC-CCCChhHHHHhh
Q 039861 307 RKLMYIDNDDTDSLR--YLPVGIGELIRLRRVTKLVV-GGGYDRACSLGSLKKLN-LLRECTIRGLG-GVSDAGEARRAE 381 (557)
Q Consensus 307 ~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~-~~~~~~~~~l~~L~~L~-~L~~l~i~~~~-~~~~~~~~~~~~ 381 (557)
++|++|++++|..++ .++..++.+++|++|++.++ .... ......+..++ +|+.|.+.++. .+.+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~-------- 211 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQK-------- 211 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCH--------
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCH--------
Confidence 666666666553333 23444445555555555444 2221 00112244455 56666665542 1111
Q ss_pred ccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEe
Q 039861 382 LEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRV 461 (557)
Q Consensus 382 l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~ 461 (557)
..++..+..+++|+.|++++|..... ..++.++.+++|++|++++|..+.
T Consensus 212 ----------~~l~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~l~~l~~L~~L~l~~~~~~~-- 261 (336)
T 2ast_B 212 ----------SDLSTLVRRCPNLVHLDLSDSVMLKN------------------DCFQEFFQLNYLQHLSLSRCYDII-- 261 (336)
T ss_dssp ----------HHHHHHHHHCTTCSEEECTTCTTCCG------------------GGGGGGGGCTTCCEEECTTCTTCC--
T ss_pred ----------HHHHHHHhhCCCCCEEeCCCCCcCCH------------------HHHHHHhCCCCCCEeeCCCCCCCC--
Confidence 11223334567888888887763220 112235567889999998876221
Q ss_pred cccccCCCCCCCCcccccccccccccccccccccccccccccccccccC-CccceeeeccCccccCCCCCcC
Q 039861 462 GNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIM-PRLSSLSIQSCPKLKALPDHLL 532 (557)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 532 (557)
+..+. .+..+++|+.|++++| +.. ..+..+ .+|+.|++++|..-...|..+.
T Consensus 262 ~~~~~---------~l~~~~~L~~L~l~~~--i~~--------~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 262 PETLL---------ELGEIPTLKTLQVFGI--VPD--------GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGG---------GGGGCTTCCEEECTTS--SCT--------TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHH---------HHhcCCCCCEEeccCc--cCH--------HHHHHHHhhCcceEEecccCccccCCccc
Confidence 11111 1346888999999887 221 122333 3466777887754445555443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.5e-16 Score=151.49 Aligned_cols=202 Identities=19% Similarity=0.188 Sum_probs=129.8
Q ss_pred CcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-hhhcccCCCeeecccCCcccccc-hhh
Q 039861 202 RGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLNLKSQNKIEKLP-ETL 279 (557)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~~ 279 (557)
+.|++|++++|.+ ....+..|.++++|++|++ +++.+..++. .++.+++|++|++++|. +..+| ..+
T Consensus 28 ~~l~~L~ls~n~l---~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDL-------SRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCC---CEECTTTTTTCTTCSEEEC-------TTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCcc---cccCHhHhccccCCcEEEC-------CCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 3577888887763 3333445777888888888 7777777664 57778888888888887 66655 567
Q ss_pred hccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCCc--ccccccCcccccccCceEecCccCCccCcccccc
Q 039861 280 CELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLRY--LPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKK 356 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~ 356 (557)
.++++|++|++++|. +..++. .++++++|++|++++|. +.. +|..++.+++|++|++.++.........+..+..
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 788888888888766 555443 57778888888888773 333 5677777888888877766655433334444555
Q ss_pred CCcCC-CceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCcccc
Q 039861 357 LNLLR-ECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNC 435 (557)
Q Consensus 357 L~~L~-~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~ 435 (557)
++.+. .+.+++..- . ..........+|+.|++++|.+.. +|+
T Consensus 175 L~~l~l~L~ls~n~l-~--------------------~~~~~~~~~~~L~~L~L~~n~l~~--~~~-------------- 217 (276)
T 2z62_A 175 MPLLNLSLDLSLNPM-N--------------------FIQPGAFKEIRLKELALDTNQLKS--VPD-------------- 217 (276)
T ss_dssp CTTCCEEEECCSSCC-C--------------------EECTTSSCSCCEEEEECCSSCCSC--CCT--------------
T ss_pred ccccceeeecCCCcc-c--------------------ccCccccCCCcccEEECCCCceee--cCH--------------
Confidence 44443 344443211 0 011122223478888888776544 211
Q ss_pred CCCCCCCCCCCcCeeeecccc
Q 039861 436 EHLPPLGKLPSLEYLEIEGMQ 456 (557)
Q Consensus 436 ~~l~~l~~l~~L~~L~l~~~~ 456 (557)
..+..+++|++|++++++
T Consensus 218 ---~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 218 ---GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ---TTTTTCCSCCEEECCSSC
T ss_pred ---hHhcccccccEEEccCCc
Confidence 125678999999998754
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.8e-16 Score=149.65 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=45.8
Q ss_pred ceeEEEeccccCCCCcCcccccch-hhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCc-ccccCC
Q 039861 230 CLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELP-RGIGKL 306 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L 306 (557)
.|++|++ +++.+..++. .++++++|++|++++|. +..+| ..+.++++|++|++++|. +..++ ..+.++
T Consensus 29 ~l~~L~l-------s~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDL-------SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGL 99 (276)
T ss_dssp TCCEEEC-------TTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTC
T ss_pred CccEEEC-------CCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCC
Confidence 5666666 5555655553 55666666666666665 55544 345666666666666655 33333 445666
Q ss_pred CCCcEeecCCC
Q 039861 307 RKLMYIDNDDT 317 (557)
Q Consensus 307 ~~L~~L~l~~~ 317 (557)
++|++|++++|
T Consensus 100 ~~L~~L~l~~n 110 (276)
T 2z62_A 100 SSLQKLVAVET 110 (276)
T ss_dssp TTCCEEECTTS
T ss_pred ccccEEECCCC
Confidence 66666666665
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=3e-16 Score=148.89 Aligned_cols=102 Identities=25% Similarity=0.480 Sum_probs=53.0
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccch-hh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPE-TL 279 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~~ 279 (557)
++.|+.|.+.++.+.. ++. +..+++|++|++ ++|.+..++ .++.+++|++|++++|. +..+|. .+
T Consensus 40 l~~L~~L~l~~~~i~~----~~~-l~~l~~L~~L~l-------~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~ 105 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS----VQG-IQYLPNVRYLAL-------GGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVF 105 (272)
T ss_dssp HTTCCEEECTTSCCCC----CTT-GGGCTTCCEEEC-------TTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred ccceeeeeeCCCCccc----ccc-cccCCCCcEEEC-------CCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHh
Confidence 5555555555554221 121 455555666666 555555443 45555556666665555 444442 24
Q ss_pred hccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCC
Q 039861 280 CELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDT 317 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 317 (557)
+++++|++|++++|. +..+|.. ++.+++|++|++++|
T Consensus 106 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 106 DKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC
Confidence 555556666665554 3343332 455555566655555
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.66 E-value=9.6e-17 Score=185.37 Aligned_cols=137 Identities=21% Similarity=0.312 Sum_probs=114.1
Q ss_pred ChHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhh----h----hcccchhHHHHhhccCChhhhHHHhh
Q 039861 1 KIGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELE----A----IKKGLLAPLLLSYNELPSKVKQCFTY 72 (557)
Q Consensus 1 ~i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~----~----~~~~i~~~l~~sy~~L~~~~k~cfl~ 72 (557)
+++++|+++|+|+||||+++|+.|+.+. ..|+.+++.+..... . ....+..++.+||+.|++++|.||+|
T Consensus 308 ~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~ 385 (1249)
T 3sfz_A 308 AEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTD 385 (1249)
T ss_dssp THHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3688999999999999999999998775 368888775432210 0 11358889999999999999999999
Q ss_pred hcCCCCCCccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEechHHHHHHHHhccc
Q 039861 73 CAVFPKDYDIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKMHDIVHDFAQYLCSN 152 (557)
Q Consensus 73 ~a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~~~~~i~~~ 152 (557)
||+||+++.|+++.++.+|.++ ++.+++++++|++++|++... .|+..+|+|||++|++++..+.+
T Consensus 386 l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 386 LSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp GGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGG
T ss_pred hCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhH
Confidence 9999999999999999999654 467899999999999998654 34555799999999999998776
Q ss_pred c
Q 039861 153 E 153 (557)
Q Consensus 153 e 153 (557)
+
T Consensus 452 ~ 452 (1249)
T 3sfz_A 452 Q 452 (1249)
T ss_dssp G
T ss_pred H
Confidence 5
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1e-15 Score=147.93 Aligned_cols=191 Identities=21% Similarity=0.274 Sum_probs=154.1
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++ . +..+++|+.|++++|.+ .. ++. +..+++|++|++ ++|.+..+| .
T Consensus 41 ~~L~~L~l~~~~i~~l~-~----~~~l~~L~~L~L~~n~i---~~-~~~-~~~l~~L~~L~L-------~~n~l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-G----VQYLNNLIGLELKDNQI---TD-LAP-LKNLTKITELEL-------SGNPLKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-T----GGGCTTCCEEECCSSCC---CC-CGG-GTTCCSCCEEEC-------CSCCCSCCG-G
T ss_pred CCcCEEEeeCCCccCch-h----hhccCCCCEEEccCCcC---CC-Chh-HccCCCCCEEEc-------cCCcCCCch-h
Confidence 56888888877776654 2 33499999999999984 33 333 899999999999 888888886 6
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
++.+.+|++|++++|. +..+|. +..+++|++|++++|. +..+|. ++.+++|++|++++| .+..++. ++.+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCC
Confidence 9999999999999998 888886 9999999999999987 777776 899999999999999 6667766 88999999
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCC
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRG 414 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~ 414 (557)
.|++..+.... +..+..+++|+.+++++..-.. ...+..+++|+.|++++|.+
T Consensus 177 ~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~N~l~~----------------------~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 177 TLKADDNKISD-----ISPLASLPNLIEVHLKNNQISD----------------------VSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCCEEECTTSCCCB----------------------CGGGTTCTTCCEEEEEEEEE
T ss_pred EEECCCCccCc-----ChhhcCCCCCCEEEccCCccCc----------------------cccccCCCCCCEEEccCCee
Confidence 99988776553 3336778888888887653221 11356789999999999987
Q ss_pred cC
Q 039861 415 RR 416 (557)
Q Consensus 415 ~~ 416 (557)
..
T Consensus 230 ~~ 231 (308)
T 1h6u_A 230 TN 231 (308)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=4.1e-16 Score=153.74 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=42.2
Q ss_pred CceeEEEeccccCCCCcCcccccch-hhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCc-ccccC
Q 039861 229 TCLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELP-RGIGK 305 (557)
Q Consensus 229 ~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~ 305 (557)
+++++|+| ++|.++.+|. .|+++++|++|+|++|...+.+| ..|.++++|+++...++..+..+| ..+..
T Consensus 30 ~~l~~L~L-------s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRF-------VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TTCSEEEE-------ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCCEEEc-------cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 35556666 5555555553 35556666666666655233444 234555555543333323344443 33455
Q ss_pred CCCCcEeecCCC
Q 039861 306 LRKLMYIDNDDT 317 (557)
Q Consensus 306 L~~L~~L~l~~~ 317 (557)
+++|++|++++|
T Consensus 103 l~~L~~L~l~~n 114 (350)
T 4ay9_X 103 LPNLQYLLISNT 114 (350)
T ss_dssp CTTCCEEEEEEE
T ss_pred cccccccccccc
Confidence 566666666555
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.5e-15 Score=144.11 Aligned_cols=106 Identities=26% Similarity=0.394 Sum_probs=78.1
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCccc-c
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRG-I 303 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i 303 (557)
+..+++|+.|++ .++.+..++ .++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+|.. +
T Consensus 37 ~~~l~~L~~L~l-------~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIA-------NNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEEC-------TTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred cccccceeeeee-------CCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHh
Confidence 456778888888 777777665 47788888888888887 77765 57888888888888876 5565544 5
Q ss_pred cCCCCCcEeecCCCCCCCccccc-ccCcccccccCceEec
Q 039861 304 GKLRKLMYIDNDDTDSLRYLPVG-IGELIRLRRVTKLVVG 342 (557)
Q Consensus 304 ~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~ 342 (557)
+.+++|++|++++| .+..+|.. ++.+++|++|++..+.
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc
Confidence 78888888888888 44455443 6778888887766553
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=1.3e-18 Score=178.95 Aligned_cols=331 Identities=17% Similarity=0.171 Sum_probs=190.1
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc-----ccchhhhcccCCCeeecccCCcccc-
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-----EIPTNIEKLLHLKYLNLKSQNKIEK- 274 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-----~lp~~~~~l~~L~~L~L~~~~~l~~- 274 (557)
.+.|++|+++++.+... .....+..+++|++|++ +++.+. .+|..+..+++|++|++++|. +..
T Consensus 2 ~~~l~~L~Ls~~~l~~~--~~~~~~~~~~~L~~L~L-------~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDA--RWAELLPLLQQCQVVRL-------DDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDV 71 (461)
T ss_dssp CEEEEEEEEESCCCCHH--HHHHHHHHHTTCSEEEE-------ESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHH
T ss_pred CccceehhhhhcccCch--hHHHHHhhcCCccEEEc-------cCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChH
Confidence 46789999999885322 24555888999999999 666665 567888999999999999998 654
Q ss_pred cchhhh-ccC----cCcEeecCCccccc-----cCcccccCCCCCcEeecCCCCCCCc-ccccc-----cCcccccccCc
Q 039861 275 LPETLC-ELH----NLERLNVDDCENLR-----ELPRGIGKLRKLMYIDNDDTDSLRY-LPVGI-----GELIRLRRVTK 338 (557)
Q Consensus 275 lp~~~~-~l~----~L~~L~l~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~-~p~~i-----~~L~~L~~L~~ 338 (557)
.+..+. .++ +|++|++++|. +. .+|..+..+++|++|++++|. +.. .+..+ ...++|++|++
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEEC
Confidence 233343 465 69999999987 44 568888999999999999994 332 12222 22557899888
Q ss_pred eEecCccCCccC-ccccccCCcCCCceecCCCCCCChhHH-HHh----hccCCCCCchH---------HhhhhcCCCCCC
Q 039861 339 LVVGGGYDRACS-LGSLKKLNLLRECTIRGLGGVSDAGEA-RRA----ELEKKKNLDED---------ERLLEALGPPPN 403 (557)
Q Consensus 339 ~~~~~~~~~~~~-l~~L~~L~~L~~l~i~~~~~~~~~~~~-~~~----~l~~l~~l~~~---------~~~~~~l~~~~~ 403 (557)
..+......... ...+..+++|+.+++++.. +...... ... ....++.+... ..+...+..+++
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC
Confidence 777654322111 2345566778888887654 2221111 111 12234333311 123344455677
Q ss_pred ccEEEEeecCCcCCC---C------CcccccCccccCccccCC----CCC-CCCCCCcCeeeeccccC------------
Q 039861 404 LKKLQIYDYRGRRNV---V------PKNWIMDLSLFRCRNCEH----LPP-LGKLPSLEYLEIEGMQS------------ 457 (557)
Q Consensus 404 L~~L~l~~~~~~~~~---~------~~~~l~~L~l~~~~~~~~----l~~-l~~l~~L~~L~l~~~~~------------ 457 (557)
|++|++++|.+.... + +...++.|++++|..... ++. +..+++|++|+++++.-
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 888888777543200 0 122355566666632111 222 34466777777766431
Q ss_pred ------ceEecccccCCCCC---CCCcccccccccccccccccccccccccccccccccc-cCCccceeeeccCcccc--
Q 039861 458 ------VKRVGNEFLGVESD---TDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEII-IMPRLSSLSIQSCPKLK-- 525 (557)
Q Consensus 458 ------l~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~-- 525 (557)
++.+.-........ .....+..+++|+.|+++++ .+..... ..+...+. ..++|++|++++|. ++
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-i~~~ 385 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV-RELCQGLGQPGSVLRVLWLADCD-VSDS 385 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH-HHHHHHHTSTTCCCCEEECTTSC-CCHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccH-HHHHHHHcCCCCceEEEECCCCC-CChh
Confidence 11110000000000 00001223467777777765 3332211 00011111 15688888888884 54
Q ss_pred ---CCCCCcCCCCCcceEEEecCCC
Q 039861 526 ---ALPDHLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 526 ---~lp~~~~~l~~L~~L~l~~c~~ 547 (557)
.+|..+..+++|++|++++|+.
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred hHHHHHHHHHhCCCccEEECCCCCC
Confidence 5666666678888888888864
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=6.3e-16 Score=146.55 Aligned_cols=144 Identities=25% Similarity=0.408 Sum_probs=92.3
Q ss_pred eEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh-h
Q 039861 177 IRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN-I 255 (557)
Q Consensus 177 ~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~-~ 255 (557)
.+.+....+....+|..+ .+.++.|++++|.+ ....+..|.++++|++|++ +++.+..+|.. +
T Consensus 18 ~~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l-------~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI------PADTKKLDLQSNKL---SSLPSKAFHRLTKLRLLYL-------NDNKLQTLPAGIF 81 (270)
T ss_dssp TTEEECTTSCCSSCCSCC------CTTCSEEECCSSCC---SCCCTTSSSSCTTCCEEEC-------CSSCCSCCCTTTT
T ss_pred CCEEEccCCCCCccCCCC------CCCCCEEECcCCCC---CeeCHHHhcCCCCCCEEEC-------CCCccCeeChhhh
Confidence 344555555555555433 34677777777763 3333445777778888888 77777777654 4
Q ss_pred hcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCCccccc-ccCccc
Q 039861 256 EKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLRYLPVG-IGELIR 332 (557)
Q Consensus 256 ~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~ 332 (557)
+.+++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .++.+++|++|++++| .+..+|.. ++.+++
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTS 158 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcc
Confidence 677778888887777 66666 345677788888887766 555443 4577778888888777 45555543 455666
Q ss_pred ccccCce
Q 039861 333 LRRVTKL 339 (557)
Q Consensus 333 L~~L~~~ 339 (557)
|+.|++.
T Consensus 159 L~~L~L~ 165 (270)
T 2o6q_A 159 LKELRLY 165 (270)
T ss_dssp CCEEECC
T ss_pred cceeEec
Confidence 6655543
No 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.63 E-value=3e-16 Score=167.15 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=97.9
Q ss_pred HHcCCcHHHHHHHHHhhcCCC-CHHHHHHHHhhhhhhhhhhcccchhHHHHhhccCChhh-hHHHhhhcCCCCCCccCHH
Q 039861 8 KKCKGLPLAAKTIASLLRSKS-TEKEWQNILENEIWELEAIKKGLLAPLLLSYNELPSKV-KQCFTYCAVFPKDYDIQKE 85 (557)
Q Consensus 8 ~~c~GlPLal~~~g~~L~~~~-~~~~W~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~ 85 (557)
+.|+|+||||+++|+.|+++. +.++|+.+ ....+..++++||+.||+++ |.||+|||+||+++.|+++
T Consensus 321 eICgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~e 390 (1221)
T 1vt4_I 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390 (1221)
T ss_dssp HHCCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHH
T ss_pred HHhCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHH
Confidence 449999999999999999874 57788753 13458899999999999999 9999999999999999999
Q ss_pred HHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEechHHHHHHH
Q 039861 86 ELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKMHDIVHDFAQ 147 (557)
Q Consensus 86 ~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~~~~ 147 (557)
.++.+|+++| ++.+++++++|+++||++... ...+++|||++++++.
T Consensus 391 lLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 391 LLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 9999999987 135888999999999999732 2236899999999763
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=2e-15 Score=144.38 Aligned_cols=197 Identities=16% Similarity=0.096 Sum_probs=136.8
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....+|..+ .+.++.|++++|.+ ....|..|..+++|++|+| ++|.+..+|..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~------~~~l~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL------PKDTTILHLSENLL---YTFSLATLMPYTRLTQLNL-------DRAELTKLQVD 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC------CTTCCEEECTTSCC---SEEEGGGGTTCTTCCEEEC-------TTSCCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCC------CCCCCEEEcCCCcC---CccCHHHhhcCCCCCEEEC-------CCCccCcccCC
Confidence 45666666666666666554 35788888888873 4445666888889999999 88888887764
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCccccc-ccCccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYLPVG-IGELIR 332 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~ 332 (557)
+.+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++| .++.+|.+ +..+++
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPK 149 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccC
Confidence 788889999998888 88888888888899999998877 66666 45788889999999888 55566554 567888
Q ss_pred ccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeec
Q 039861 333 LRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDY 412 (557)
Q Consensus 333 L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~ 412 (557)
|+.|++..+........ .+..+++|+.+.+++..-. .++..+...++|+.|++++|
T Consensus 150 L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~---------------------~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAG---LLNGLENLDTLLLQENSLY---------------------TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCEEECTTSCCSCCCTT---TTTTCTTCCEEECCSSCCC---------------------CCCTTTTTTCCCSEEECCSC
T ss_pred CCEEECCCCcCCccCHH---HhcCcCCCCEEECCCCcCC---------------------ccChhhcccccCCeEEeCCC
Confidence 88887776655432221 2344555666666543211 11233444557778887777
Q ss_pred CCc
Q 039861 413 RGR 415 (557)
Q Consensus 413 ~~~ 415 (557)
+..
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 643
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.5e-15 Score=141.24 Aligned_cols=125 Identities=14% Similarity=0.259 Sum_probs=64.3
Q ss_pred cceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCc-ccccch-hhhcccCCCeeeccc-CCcccccc-hh
Q 039861 203 GLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVND-IKEIPT-NIEKLLHLKYLNLKS-QNKIEKLP-ET 278 (557)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~-l~~lp~-~~~~l~~L~~L~L~~-~~~l~~lp-~~ 278 (557)
.|+.|++.+|. +....+..|..+++|++|++ ++|. ++.+|. .++.+++|++|++++ |. +..+| ..
T Consensus 32 ~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l-------~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~ 100 (239)
T 2xwt_C 32 STQTLKLIETH---LRTIPSHAFSNLPNISRIYV-------SIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDA 100 (239)
T ss_dssp TCCEEEEESCC---CSEECTTTTTTCTTCCEEEE-------ECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTS
T ss_pred cccEEEEeCCc---ceEECHHHccCCCCCcEEeC-------CCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHH
Confidence 45555555555 22223334555556666666 5554 555543 455555666666655 44 55554 34
Q ss_pred hhccCcCcEeecCCccccccCcccccCCCCCc---EeecCCCCCCCccccc-ccCccccc-ccCceE
Q 039861 279 LCELHNLERLNVDDCENLRELPRGIGKLRKLM---YIDNDDTDSLRYLPVG-IGELIRLR-RVTKLV 340 (557)
Q Consensus 279 ~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~p~~-i~~L~~L~-~L~~~~ 340 (557)
+..+++|++|++++|. +..+|. ++.+++|+ +|++++|..++.+|.. ++.+++|+ .|++..
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 5555566666666554 444554 55555555 5666555333444432 44555555 554433
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=1.1e-16 Score=169.90 Aligned_cols=298 Identities=13% Similarity=0.066 Sum_probs=152.8
Q ss_pred ceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccc-----cchhhhcccCCCeeecccCCccc-----
Q 039861 204 LRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE-----IPTNIEKLLHLKYLNLKSQNKIE----- 273 (557)
Q Consensus 204 L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~l~----- 273 (557)
|++|++.++... ....++.....+++|++|+| +++.+.. ++..+..+++|++|++++|. +.
T Consensus 140 L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L-------~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~ 210 (592)
T 3ogk_B 140 LETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLM-------EESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPK 210 (592)
T ss_dssp CCEEEEESCEEE-EHHHHHHHHHHCTTCSEEEC-------TTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHH
T ss_pred CcEEECcCCCCc-CHHHHHHHHhhCCCCCEEEC-------ccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHH
Confidence 666666655411 11123343445666666666 4443321 23334556666666666665 33
Q ss_pred ccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCC---CcccccccCcccccccCceEecCccCCccC
Q 039861 274 KLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSL---RYLPVGIGELIRLRRVTKLVVGGGYDRACS 350 (557)
Q Consensus 274 ~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l---~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~ 350 (557)
.++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..++.+++|+.|.+..... ...
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~l 285 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP----NEM 285 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT----TTG
T ss_pred HHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch----hHH
Confidence 344445566666666666655 4556655666666666666543221 12223344455555544332211 111
Q ss_pred ccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCC-----ccccc
Q 039861 351 LGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVP-----KNWIM 425 (557)
Q Consensus 351 l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~l~ 425 (557)
...+..+++|+.|.+.++. +.. ......+..+++|+.|+++++..... ++ ...++
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~-l~~------------------~~~~~~~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~ 345 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL-LET------------------EDHCTLIQKCPNLEVLETRNVIGDRG-LEVLAQYCKQLK 345 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC-CCH------------------HHHHHHHTTCTTCCEEEEEGGGHHHH-HHHHHHHCTTCC
T ss_pred HHHHhhcCCCcEEecCCCc-CCH------------------HHHHHHHHhCcCCCEEeccCccCHHH-HHHHHHhCCCCC
Confidence 1223344556666665543 211 11223356788999999984321110 00 11255
Q ss_pred CccccC----------ccccCC--CCC-CCCCCCcCeeeeccccCceEecccccCCCCCCCCccc-ccccccccccccc-
Q 039861 426 DLSLFR----------CRNCEH--LPP-LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSV-IAFPKLKKLEFRN- 490 (557)
Q Consensus 426 ~L~l~~----------~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~- 490 (557)
.|++.+ |..+.. ++. ...+++|++|+++ |..+.... +.. + ..+++|+.|++..
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~--~~~---------l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNES--LES---------IGTYLKNLCDFRLVLL 413 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHH--HHH---------HHHHCCSCCEEEEEEC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHH--HHH---------HHhhCCCCcEEEEeec
Confidence 667774 443332 122 2357888888883 33332211 000 1 2378899999974
Q ss_pred --cccccccccccccccccccCCccceeeeccCcc-cc-C-CCCCcCCCCCcceEEEecCCC
Q 039861 491 --MEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPK-LK-A-LPDHLLQKSTLQKLEIWGCPI 547 (557)
Q Consensus 491 --~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~-l~-~-lp~~~~~l~~L~~L~l~~c~~ 547 (557)
++.++..+....++..+..+++|+.|++++|.. +. . +......+++|++|++++|..
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence 445544321112233456789999999987753 22 1 111112378899999999873
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=9.5e-17 Score=170.53 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=75.5
Q ss_pred CceEEEEEEecCCCCcccccccccC-CCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccc---
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVK-GLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE--- 250 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~--- 250 (557)
..++++.+..+..... ....+. .+++|++|++.++..- ....++..+.++++|++|++ +++.+..
T Consensus 105 ~~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L-------~~~~i~~~~~ 173 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDD---CLELIAKSFKNFKVLVLSSCEGF-STDGLAAIAATCRNLKELDL-------RESDVDDVSG 173 (594)
T ss_dssp TTCCEEEEESCBCCHH---HHHHHHHHCTTCCEEEEESCEEE-EHHHHHHHHHHCTTCCEEEC-------TTCEEECCCG
T ss_pred CCCCeEEeeCcEEcHH---HHHHHHHhCCCCcEEeCCCcCCC-CHHHHHHHHHhCCCCCEEeC-------cCCccCCcch
Confidence 4677777776654321 111111 2678888888777311 11224555567888888888 4444332
Q ss_pred --cchhhhcccCCCeeecccCC-cc--cccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCC
Q 039861 251 --IPTNIEKLLHLKYLNLKSQN-KI--EKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDT 317 (557)
Q Consensus 251 --lp~~~~~l~~L~~L~L~~~~-~l--~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 317 (557)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+.++++|++|+++.+
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 33333456677777777764 11 122333345677777777777556666666666777777765544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=146.96 Aligned_cols=109 Identities=15% Similarity=0.063 Sum_probs=76.0
Q ss_pred CCcceEEEeccCCccchh-hhhHHHHhcCCceeEEEeccccCCCCcCccc-ccchhh--hcccCCCeeecccCCcccc-c
Q 039861 201 LRGLRSFLVKSDEYSWSS-EVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-EIPTNI--EKLLHLKYLNLKSQNKIEK-L 275 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-~lp~~~--~~l~~L~~L~L~~~~~l~~-l 275 (557)
...++.+.+......... ..+.. +..+++|++|++ +++.+. ..|..+ +.+.+|++|++++|. +.. .
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l-------~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~ 133 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTL-------EDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGR 133 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEE-------ESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEe-------eCCEeccchhhhhhhccCCCCCEEEeeccc-ccchh
Confidence 345677777776643211 11122 234567999999 777776 456666 889999999999998 553 3
Q ss_pred c----hhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCC
Q 039861 276 P----ETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTD 318 (557)
Q Consensus 276 p----~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 318 (557)
| ..+..+++|++|++++|......|..++.+++|++|++++|.
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 3 345678999999999988444444678899999999999984
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=4.3e-17 Score=163.29 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=72.1
Q ss_pred hhHHHHhcCCceeEEEeccccCCCCcCcccc-----cchhhhcccCCCeeecccCCccc----ccchhh-------hccC
Q 039861 220 VLPQLFDKLTCLRALNLKVRKPWSSVNDIKE-----IPTNIEKLLHLKYLNLKSQNKIE----KLPETL-------CELH 283 (557)
Q Consensus 220 ~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~l~----~lp~~~-------~~l~ 283 (557)
.++..+..+++|++|+| +++.+.. ++..+..+++|++|+|++|. +. .+|..+ ..++
T Consensus 23 ~l~~~l~~~~~L~~L~L-------~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVL-------SGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp TTSHHHHHCSCCCEEEC-------TTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHHhcCCCccEEEC-------CCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCC
Confidence 35667889999999999 7777664 44557789999999999875 43 345444 6889
Q ss_pred cCcEeecCCccccc----cCcccccCCCCCcEeecCCCCC
Q 039861 284 NLERLNVDDCENLR----ELPRGIGKLRKLMYIDNDDTDS 319 (557)
Q Consensus 284 ~L~~L~l~~~~~l~----~lp~~i~~L~~L~~L~l~~~~~ 319 (557)
+|++|++++|.... .+|..+..+++|++|++++|..
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 99999999987433 3777889999999999999943
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=1.8e-15 Score=148.45 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=138.8
Q ss_pred ceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccc-ccchh
Q 039861 176 KIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK-EIPTN 254 (557)
Q Consensus 176 ~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~-~lp~~ 254 (557)
.++.+.+..+.....+...+. +++|++|++++|.+. ...+|..+..+++|++|++ +++.+. ..|..
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~----~~~L~~L~L~~~~l~--~~~~~~~~~~~~~L~~L~L-------~~~~l~~~~~~~ 137 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFS----PFRVQHMDLSNSVIE--VSTLHGILSQCSKLQNLSL-------EGLRLSDPIVNT 137 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCC----CBCCCEEECTTCEEC--HHHHHHHHTTBCCCSEEEC-------TTCBCCHHHHHH
T ss_pred cceEEEcCCccccccchhhcc----CCCCCEEEccCCCcC--HHHHHHHHhhCCCCCEEeC-------cCcccCHHHHHH
Confidence 344454444443333333333 888899999888632 1226777888899999999 666666 56777
Q ss_pred hhcccCCCeeecccCCccc--ccchhhhccCcCcEeecCCcccccc--CcccccCCC-CCcEeecCCCC-CC--Cccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIE--KLPETLCELHNLERLNVDDCENLRE--LPRGIGKLR-KLMYIDNDDTD-SL--RYLPVG 326 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~i~~L~-~L~~L~l~~~~-~l--~~~p~~ 326 (557)
++.+++|++|++++|..+. .+|..+.++++|++|++++|..+.. +|..+..++ +|++|++++|. .+ ..+|..
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 8888899999998884366 3677788889999999998834554 566678888 89999998883 22 345666
Q ss_pred ccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccE
Q 039861 327 IGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKK 406 (557)
Q Consensus 327 i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~ 406 (557)
++.+++|++|++..+.... ...+..+..+++|+.|++.++..+.. ..+..+..+++|+.
T Consensus 218 ~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~-------------------~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIP-------------------ETLLELGEIPTLKT 276 (336)
T ss_dssp HHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCG-------------------GGGGGGGGCTTCCE
T ss_pred HhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCCCCH-------------------HHHHHHhcCCCCCE
Confidence 6778888888887766211 23345666777888888877653322 11234556788999
Q ss_pred EEEeec
Q 039861 407 LQIYDY 412 (557)
Q Consensus 407 L~l~~~ 412 (557)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 988877
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=2.4e-14 Score=136.97 Aligned_cols=170 Identities=18% Similarity=0.256 Sum_probs=95.0
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+++|+.|++.++.+.. +|. +..+++|++|++ ++|.+..++. ++.+++|++|++++|. +..+|. +.
T Consensus 45 l~~L~~L~l~~~~i~~----~~~-~~~l~~L~~L~L-------~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~ 109 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS----VQG-IQYLPNVTKLFL-------NGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LK 109 (291)
T ss_dssp HHTCCEEECTTSCCCC----CTT-GGGCTTCCEEEC-------CSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GT
T ss_pred cCcccEEEccCCCccc----Chh-HhcCCCCCEEEc-------cCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hc
Confidence 5555666666555321 222 555666666666 5555555554 5666666666666665 555544 56
Q ss_pred ccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcC
Q 039861 281 ELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLL 360 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L 360 (557)
.+++|++|++++|. +..++ .+..+++|++|++++| .+..+ ..++.+++|+.|++.++.... +..+..+++|
T Consensus 110 ~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~-----~~~l~~l~~L 180 (291)
T 1h6t_A 110 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISD-----IVPLAGLTKL 180 (291)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCC-----CGGGTTCTTC
T ss_pred cCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCcccc-----chhhcCCCcc
Confidence 66666666666654 44443 4556666666666665 33444 345555666666555544332 1124455556
Q ss_pred CCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcC
Q 039861 361 RECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRR 416 (557)
Q Consensus 361 ~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 416 (557)
+.+.+++..- .. .+.+..+++|+.|++++|.+..
T Consensus 181 ~~L~L~~N~i-~~---------------------l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHI-SD---------------------LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCC-CB---------------------CGGGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcC-CC---------------------ChhhccCCCCCEEECcCCcccC
Confidence 6666554321 11 1235667899999999987655
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=4.5e-14 Score=136.66 Aligned_cols=131 Identities=14% Similarity=0.062 Sum_probs=89.5
Q ss_pred CCcceEEEeccCCccchhhhhHHHH--hcCCceeEEEeccccCCCCcCccccc-c----hhhhcccCCCeeecccCCccc
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLF--DKLTCLRALNLKVRKPWSSVNDIKEI-P----TNIEKLLHLKYLNLKSQNKIE 273 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~~~~l~~l-p----~~~~~l~~L~~L~L~~~~~l~ 273 (557)
+++|+.|++++|.+ .+..|..+ ..+++|++|+| ++|.+... | ..+..+++|++|++++|. +.
T Consensus 90 ~~~L~~L~l~~n~l---~~~~~~~~~~~~~~~L~~L~L-------s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~ 158 (310)
T 4glp_A 90 YSRLKELTLEDLKI---TGTMPPLPLEATGLALSSLRL-------RNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SP 158 (310)
T ss_dssp HSCCCEEEEESCCC---BSCCCCCSSSCCCBCCSSCEE-------ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SC
T ss_pred cCceeEEEeeCCEe---ccchhhhhhhccCCCCCEEEe-------ecccccchhhhhHHHHhhhccCCCEEEeeCCC-cc
Confidence 56688999988873 33445545 77888999999 66666542 2 335578889999999888 66
Q ss_pred ccc-hhhhccCcCcEeecCCcccccc--Ccc--cccCCCCCcEeecCCCCCCCccccc----ccCcccccccCceEecC
Q 039861 274 KLP-ETLCELHNLERLNVDDCENLRE--LPR--GIGKLRKLMYIDNDDTDSLRYLPVG----IGELIRLRRVTKLVVGG 343 (557)
Q Consensus 274 ~lp-~~~~~l~~L~~L~l~~~~~l~~--lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~~ 343 (557)
.+| ..++.+++|++|++++|..... ++. .++.+++|++|++++| .++.+|.. ++.+++|++|++.++..
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCC
Confidence 554 6788889999999998874322 322 2367888999999888 45554432 34556666666554443
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=2.7e-16 Score=157.46 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=83.9
Q ss_pred cCCCCcceEEEeccCCccch-hhhhHHHHhcCCceeEEEeccccCCCCcCccc----ccchh-------hhcccCCCeee
Q 039861 198 VKGLRGLRSFLVKSDEYSWS-SEVLPQLFDKLTCLRALNLKVRKPWSSVNDIK----EIPTN-------IEKLLHLKYLN 265 (557)
Q Consensus 198 ~~~l~~L~~L~l~~~~~~~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~----~lp~~-------~~~l~~L~~L~ 265 (557)
+..+++|++|++++|.+... ...++..+..+++|++|+| +++.+. .+|.. +..+++|++|+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L-------s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-------SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEEC-------CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeC-------cccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34489999999999975321 1123444778999999999 554333 34444 47899999999
Q ss_pred cccCCcccc-----cchhhhccCcCcEeecCCccccc----cCcccccCC---------CCCcEeecCCCC
Q 039861 266 LKSQNKIEK-----LPETLCELHNLERLNVDDCENLR----ELPRGIGKL---------RKLMYIDNDDTD 318 (557)
Q Consensus 266 L~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~ 318 (557)
|++|. +.. +|..+..+++|++|++++|.... .++..+..+ ++|++|++++|.
T Consensus 101 Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 101 LSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp CCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 99998 665 78889999999999999988422 233334445 899999999984
No 95
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=153.37 Aligned_cols=133 Identities=22% Similarity=0.333 Sum_probs=107.9
Q ss_pred hHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhh----h----hhcccchhHHHHhhccCChhhhHHHhhh
Q 039861 2 IGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWEL----E----AIKKGLLAPLLLSYNELPSKVKQCFTYC 73 (557)
Q Consensus 2 i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~cfl~~ 73 (557)
.+++|+++|+|+||||+.+|+.|+.+. ..|+.+++.+.... . .....+..++..||+.||++.|.||+++
T Consensus 309 ~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~l 386 (591)
T 1z6t_A 309 QAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDL 386 (591)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 578999999999999999999998764 36888777543211 0 0113578899999999999999999999
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEechHHHHHHHHhc
Q 039861 74 AVFPKDYDIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKMHDIVHDFAQYLC 150 (557)
Q Consensus 74 a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~~~~~~i~ 150 (557)
|+||+|+.|+.+.+...|.++ .+.++.++++|++++|++... +|...+|+||++++++++...
T Consensus 387 a~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 387 SILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp GGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred cccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 999999999999999999643 245788999999999998543 234457999999999998874
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=1.8e-14 Score=141.92 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=44.8
Q ss_pred cCCCCCCccEEEEeecCCcCCCCCccccc---CccccCccccCCCCCCCCCCCcCeeeecc
Q 039861 397 ALGPPPNLKKLQIYDYRGRRNVVPKNWIM---DLSLFRCRNCEHLPPLGKLPSLEYLEIEG 454 (557)
Q Consensus 397 ~l~~~~~L~~L~l~~~~~~~~~~~~~~l~---~L~l~~~~~~~~l~~l~~l~~L~~L~l~~ 454 (557)
.+..+++|+.|++++|.+.. +|+..+. +|...++..++.+|.+..+++|+.+++.+
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~--lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHS--LPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TTTTEECCSEEECTTSCCCC--CCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HhccCcccchhhcCCCCcCc--cChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 45667899999999998877 6665544 45777788888999999999999999875
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.2e-15 Score=151.32 Aligned_cols=69 Identities=7% Similarity=-0.044 Sum_probs=33.6
Q ss_pred CCcCeeeeccccCceEecccccCCCCCCCCccccccccccccccccccccccccc--ccccccccccCCccceeeeccCc
Q 039861 445 PSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDC--GTAIKGEIIIMPRLSSLSIQSCP 522 (557)
Q Consensus 445 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~l~~L~~L~l~~c~ 522 (557)
++|++|++++|. +...+...... ....+++|+.|++++|. +..+.. ...++..+..+++|+.|++++|+
T Consensus 225 ~~L~~L~Ls~N~-l~~~~~~~l~~-------~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLNC-LHGPSLENLKL-------LKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSSC-CCCCCHHHHHH-------TTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCCC-CCcHHHHHHHH-------HHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 467777777653 32221111000 02356677777777653 111110 01123345566677777777774
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=6.5e-14 Score=125.79 Aligned_cols=148 Identities=11% Similarity=0.165 Sum_probs=109.9
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccc-cch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE-IPT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~-lp~ 253 (557)
..++.+.+..+.+..++ .+. .+++|++|++.+|... . ++ .+..+++|++|++ ++|.+.. .|.
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~----~l~~L~~L~l~~n~~~---~-~~-~l~~l~~L~~L~l-------~~n~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIE----YAHNIKDLTINNIHAT---N-YN-PISGLSNLERLRI-------MGKDVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGG----GCTTCSEEEEESCCCS---C-CG-GGTTCTTCCEEEE-------ECTTCBGGGSC
T ss_pred CCccEEeccCCCccChH-HHh----cCCCCCEEEccCCCCC---c-ch-hhhcCCCCCEEEe-------ECCccCcccCh
Confidence 56788888887777655 333 3888888888888532 2 23 4778888888888 7777764 567
Q ss_pred hhhcccCCCeeecccCCccc-ccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccc
Q 039861 254 NIEKLLHLKYLNLKSQNKIE-KLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIR 332 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~ 332 (557)
.++.+++|++|++++|. +. ..|..++.+++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSS
T ss_pred hhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCC
Confidence 78888888888888888 55 467778888888888888877677776 5888888888888888 455565 6777777
Q ss_pred ccccCceEecC
Q 039861 333 LRRVTKLVVGG 343 (557)
Q Consensus 333 L~~L~~~~~~~ 343 (557)
|+.|++.++..
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 77777766543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=4.7e-14 Score=146.44 Aligned_cols=190 Identities=18% Similarity=0.220 Sum_probs=120.4
Q ss_pred ceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCC
Q 039861 230 CLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKL 309 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L 309 (557)
+|++|++ +++.+..+|..+. .+|++|++++|. +..+| ..+++|++|++++|. +..+|. +.+ +|
T Consensus 60 ~L~~L~L-------s~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQL-------NRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEEC-------CSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEe-------CCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 7888888 7777888887663 788888888887 77888 457888888888876 666877 655 88
Q ss_pred cEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCc
Q 039861 310 MYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLD 389 (557)
Q Consensus 310 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~ 389 (557)
++|++++| .++.+|. .+++|+.|++.++.... +
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~-------------------------l------------------ 155 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADNNQLTM-------------------------L------------------ 155 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSC-------------------------C------------------
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCCCccCc-------------------------C------------------
Confidence 88888888 4555665 35555555543332110 0
Q ss_pred hHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCC
Q 039861 390 EDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVE 469 (557)
Q Consensus 390 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 469 (557)
+. .+++|+.|++++|.+.. + |.+. ++|+.|++++|. ++.++. +..
T Consensus 156 -----p~---~l~~L~~L~Ls~N~L~~--l-------------------p~l~--~~L~~L~Ls~N~-L~~lp~-~~~-- 200 (571)
T 3cvr_A 156 -----PE---LPTSLEVLSVRNNQLTF--L-------------------PELP--ESLEALDVSTNL-LESLPA-VPV-- 200 (571)
T ss_dssp -----CC---CCTTCCEEECCSSCCSC--C-------------------CCCC--TTCCEEECCSSC-CSSCCC-CC---
T ss_pred -----CC---cCCCcCEEECCCCCCCC--c-------------------chhh--CCCCEEECcCCC-CCchhh-HHH--
Confidence 00 23567777777776443 2 2222 678888887753 444443 211
Q ss_pred CCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCCC
Q 039861 470 SDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDH 530 (557)
Q Consensus 470 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 530 (557)
. -....+.|+.|++++| .++ .+|..+..+++|+.|++++|+....+|..
T Consensus 201 ~-----L~~~~~~L~~L~Ls~N-~l~------~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 201 R-----NHHSEETEIFFRCREN-RIT------HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp ------------CCEEEECCSS-CCC------CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred h-----hhcccccceEEecCCC-cce------ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 0 0012233488888885 333 34566777888888888888754555543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=6.4e-14 Score=134.05 Aligned_cols=165 Identities=19% Similarity=0.265 Sum_probs=122.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++. +..+++|++|++++|.+. .. +. +..+++|++|++ ++|.+..+|.
T Consensus 46 ~~L~~L~l~~~~i~~~~~-----~~~l~~L~~L~L~~n~l~---~~-~~-l~~l~~L~~L~l-------~~n~l~~~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLNGNKLT---DI-KP-LANLKNLGWLFL-------DENKVKDLSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-----GGGCTTCCEEECCSSCCC---CC-GG-GTTCTTCCEEEC-------CSSCCCCGGG-
T ss_pred CcccEEEccCCCcccChh-----HhcCCCCCEEEccCCccC---CC-cc-cccCCCCCEEEC-------CCCcCCCChh-
Confidence 457777777766665532 334888888888888743 32 33 788888888888 7777877765
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+ ..++.+++|++|++++| .+..++. ++.+++|+
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccC
Confidence 8888888889888887 77775 48888888899888876 6666 46888888888888888 5566655 78888888
Q ss_pred ccCceEecCccCCccCccccccCCcCCCceecCC
Q 039861 335 RVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGL 368 (557)
Q Consensus 335 ~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 368 (557)
.|++.++.... +..+..+++|+.+++.+.
T Consensus 182 ~L~L~~N~i~~-----l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 182 NLYLSKNHISD-----LRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSCCCB-----CGGGTTCTTCSEEEEEEE
T ss_pred EEECCCCcCCC-----ChhhccCCCCCEEECcCC
Confidence 88887776543 345667777777777654
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=6.2e-14 Score=131.19 Aligned_cols=150 Identities=23% Similarity=0.340 Sum_probs=75.0
Q ss_pred cceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-hhhcccCCCeeecccCCcccccc-hhhh
Q 039861 203 GLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLNLKSQNKIEKLP-ETLC 280 (557)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~~~ 280 (557)
.++.|++.+|. +....+..|.++++|++|+| ++|.+..++. .+..+.+|++|++++|. +..+| ..+.
T Consensus 36 ~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 104 (251)
T 3m19_A 36 DTEKLDLQSTG---LATLSDATFRGLTKLTWLNL-------DYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFD 104 (251)
T ss_dssp TCCEEECTTSC---CCCCCTTTTTTCTTCCEEEC-------TTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred CCCEEEccCCC---cCccCHhHhcCcccCCEEEC-------CCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhc
Confidence 45555555555 22233334555555666665 5555554432 34555556666665555 44444 3345
Q ss_pred ccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCcccc-cccCcccccccCceEecCccCCccCccccccCC
Q 039861 281 ELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYLPV-GIGELIRLRRVTKLVVGGGYDRACSLGSLKKLN 358 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 358 (557)
.+++|++|++++|. +..+|.. +..+++|++|++++| .++.+|. .++.+++|++|++..+....... ..+..++
T Consensus 105 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~ 179 (251)
T 3m19_A 105 HLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH---GAFDRLG 179 (251)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCT
T ss_pred ccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH---HHHhCCC
Confidence 55556666665554 4444433 355555666666555 3344443 35555555555555554432111 1233344
Q ss_pred cCCCceecCC
Q 039861 359 LLRECTIRGL 368 (557)
Q Consensus 359 ~L~~l~i~~~ 368 (557)
+|+.+.+.+.
T Consensus 180 ~L~~L~l~~N 189 (251)
T 3m19_A 180 KLQTITLFGN 189 (251)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEEeeCC
Confidence 4455555443
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=4.9e-14 Score=131.91 Aligned_cols=154 Identities=23% Similarity=0.344 Sum_probs=128.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-h
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-T 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~ 253 (557)
..++.+.+..+....++.. .+.++++|++|++++|. +....|..|..+++|++|+| ++|.+..+| .
T Consensus 35 ~~l~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L-------~~n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA---TFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGL-------ANNQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEEC-------TTSCCCCCCTT
T ss_pred CCCCEEEccCCCcCccCHh---HhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEEC-------CCCcccccChh
Confidence 6789999988888766553 34459999999999998 44556677899999999999 889999887 4
Q ss_pred hhhcccCCCeeecccCCcccccchh-hhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCCCCcccc-cccCc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPET-LCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDSLRYLPV-GIGEL 330 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L 330 (557)
.++.+.+|++|++++|. +..+|.. +..+++|++|++++|. +..+|. .++.+++|++|++++| .+..+|. .+..+
T Consensus 102 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 178 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRL 178 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred HhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCC
Confidence 57899999999999998 8888754 6899999999999987 777776 5899999999999999 4555554 68889
Q ss_pred ccccccCceEecCc
Q 039861 331 IRLRRVTKLVVGGG 344 (557)
Q Consensus 331 ~~L~~L~~~~~~~~ 344 (557)
++|+.|++.++...
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 99999988877654
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=4.2e-14 Score=127.02 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccc-cchhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEK-LPETL 279 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~~ 279 (557)
+++|+.|+++++.+. . +| .+..+++|++|++ +++.+..++ .++.+++|++|++++|. +.. .|..+
T Consensus 43 l~~L~~L~l~~n~i~---~-l~-~l~~l~~L~~L~l-------~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVT---D-LT-GIEYAHNIKDLTI-------NNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIPNL 108 (197)
T ss_dssp HHTCCEEEEESSCCS---C-CT-TGGGCTTCSEEEE-------ESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCC
T ss_pred cCCccEEeccCCCcc---C-hH-HHhcCCCCCEEEc-------cCCCCCcch-hhhcCCCCCEEEeECCc-cCcccChhh
Confidence 667777777777632 2 34 3667777777777 555555544 56777777777777776 543 55667
Q ss_pred hccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEe
Q 039861 280 CELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVV 341 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 341 (557)
+.+++|++|++++|......|..++.+++|++|++++|..++.+| .++.+++|+.|++.++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 777777777777766444456667777777777777774355555 4555666666555443
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=5.9e-14 Score=129.24 Aligned_cols=145 Identities=26% Similarity=0.386 Sum_probs=110.8
Q ss_pred EEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh-hhcc
Q 039861 180 LMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN-IEKL 258 (557)
Q Consensus 180 l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~-~~~l 258 (557)
+....+....+|..+ .++|+.|++++|. +....|..|..+++|++|+| ++|.+..+|.. ++.+
T Consensus 24 v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L-------~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI------PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYL-------GSNQLGALPVGVFDSL 87 (229)
T ss_dssp EECTTSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTTTTTTC
T ss_pred eEccCCCcCccCCCC------CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEEC-------CCCCCCCcChhhcccC
Confidence 444444455556543 4678899999988 44445677888999999999 88888888744 6889
Q ss_pred cCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccc-cccCccccccc
Q 039861 259 LHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPV-GIGELIRLRRV 336 (557)
Q Consensus 259 ~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L 336 (557)
.+|++|+|++|. +..+|. .+..+++|++|++++|. +..+|..+..+++|++|++++| .+..+|. .+..+++|+.|
T Consensus 88 ~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 88 TQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 999999999998 888774 46789999999999977 7789988899999999999988 5566664 46777777777
Q ss_pred CceEecC
Q 039861 337 TKLVVGG 343 (557)
Q Consensus 337 ~~~~~~~ 343 (557)
++.++..
T Consensus 165 ~l~~N~~ 171 (229)
T 3e6j_A 165 YLFGNPW 171 (229)
T ss_dssp ECTTSCB
T ss_pred EeeCCCc
Confidence 6665543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=5.9e-14 Score=128.31 Aligned_cols=143 Identities=20% Similarity=0.277 Sum_probs=104.6
Q ss_pred EEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcccC
Q 039861 182 LIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKLLH 260 (557)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l~~ 260 (557)
...+....+|..+ .+.++.|++.+|.+ ....+..|..+++|++|+| ++|.+..+ |..+..+.+
T Consensus 18 c~~~~l~~iP~~l------~~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~L-------s~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 18 CRGKGLTEIPTNL------PETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDL-------SNNQISELAPDAFQGLRS 81 (220)
T ss_dssp CTTSCCSSCCSSC------CTTCCEEECCSSCC---CEECTTSSTTCTTCCEEEC-------CSSCCCEECTTTTTTCSS
T ss_pred cCCCCcCcCCCcc------CcCCCEEECCCCcC---CCcCHhHhhCCCCCCEEEC-------CCCcCCCcCHHHhhCCcC
Confidence 3334445555443 35788888888873 3444556788888999999 88888876 677888889
Q ss_pred CCeeecccCCcccccchh-hhccCcCcEeecCCccccccC-cccccCCCCCcEeecCCCCCCCcccc-cccCcccccccC
Q 039861 261 LKYLNLKSQNKIEKLPET-LCELHNLERLNVDDCENLREL-PRGIGKLRKLMYIDNDDTDSLRYLPV-GIGELIRLRRVT 337 (557)
Q Consensus 261 L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~ 337 (557)
|++|+|++|. +..+|.. +..+++|++|++++|. +..+ |..+..+++|++|++++| .++.++. .+..+++|+.|+
T Consensus 82 L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 82 LNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEE
Confidence 9999998888 8888754 5788899999999877 5554 566788889999999888 4555554 477777787777
Q ss_pred ceEecC
Q 039861 338 KLVVGG 343 (557)
Q Consensus 338 ~~~~~~ 343 (557)
+.++..
T Consensus 159 L~~N~~ 164 (220)
T 2v9t_B 159 LAQNPF 164 (220)
T ss_dssp CCSSCE
T ss_pred eCCCCc
Confidence 766544
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=2e-15 Score=160.33 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=34.9
Q ss_pred CcccccCCCCCcEeecCCCCCCCc--ccccccCcccccccCceEecCccCCccCcccc-ccCCcCCCceec
Q 039861 299 LPRGIGKLRKLMYIDNDDTDSLRY--LPVGIGELIRLRRVTKLVVGGGYDRACSLGSL-KKLNLLRECTIR 366 (557)
Q Consensus 299 lp~~i~~L~~L~~L~l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L-~~L~~L~~l~i~ 366 (557)
+|..+..+++|++|++++|. +.. ++..+..+++|++|.+..+ .. ...+..+ ..+++|+.|.+.
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~---~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IE---DAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH---HHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cC---HHHHHHHHHhCCCCCEEEEe
Confidence 44444567888888888875 332 1222456777888777654 11 1112222 235667777773
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=126.58 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=113.0
Q ss_pred EEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-hhhc
Q 039861 179 HLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-NIEK 257 (557)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~ 257 (557)
.+.+..+....+|..+ ...++.|++++|.+.... .+..|..+++|++|+| ++|.++.++. .++.
T Consensus 15 ~l~~s~n~l~~iP~~~------~~~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L-------~~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI------PQYTAELRLNNNEFTVLE--ATGIFKKLPQLRKINF-------SNNKITDIEEGAFEG 79 (220)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSCCCEEC--CCCCGGGCTTCCEEEC-------CSSCCCEECTTTTTT
T ss_pred EeEeCCCCcccCccCC------CCCCCEEEcCCCcCCccC--chhhhccCCCCCEEEC-------CCCcCCEECHHHhCC
Confidence 5556666666666544 335688999998843321 1234788999999999 8888888875 7899
Q ss_pred ccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccccc
Q 039861 258 LLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRV 336 (557)
Q Consensus 258 l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 336 (557)
+.+|++|+|++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++++|......|..++.+++|+.|
T Consensus 80 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 9999999999998 77776 458899999999999987433446778899999999999984444446778888888888
Q ss_pred CceEecCc
Q 039861 337 TKLVVGGG 344 (557)
Q Consensus 337 ~~~~~~~~ 344 (557)
++.++...
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 77766543
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=1.8e-13 Score=143.66 Aligned_cols=143 Identities=20% Similarity=0.337 Sum_probs=73.2
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.|.+..+.+..++ .+..+++|+.|++++|.+. ...| +..+++|+.|+| ++|.+..+| .
T Consensus 43 ~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N~l~---~~~~--l~~l~~L~~L~L-------s~N~l~~l~-~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLT---DIKP--LTNLKNLGWLFL-------DENKIKDLS-S 104 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTSCCC---CCGG--GGGCTTCCEEEC-------CSSCCCCCT-T
T ss_pred CCCCEEECcCCCCCCCh-----HHccCCCCCEEEeeCCCCC---CChh--hccCCCCCEEEC-------cCCCCCCCh-h
Confidence 34455555444444332 1223556666666655522 2122 555666666666 555555544 4
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
++.+.+|++|+|++|. +..+|. +..+++|+.|++++|. +..+ ..++.+++|++|++++| .+..+++ +..+++|+
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ 178 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred hccCCCCCEEEecCCC-CCCCcc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCC
Confidence 5556666666666555 555543 5556666666666554 4444 34555666666666655 3333333 55555555
Q ss_pred ccCceEe
Q 039861 335 RVTKLVV 341 (557)
Q Consensus 335 ~L~~~~~ 341 (557)
.|++..+
T Consensus 179 ~L~Ls~N 185 (605)
T 1m9s_A 179 NLYLSKN 185 (605)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 5554443
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.3e-13 Score=120.50 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=86.7
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccc-cchhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEK-LPETL 279 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~~ 279 (557)
.+.|+.|++.+|.+.. ..+|..+..+++|++|++ ++|.+..+ ..++.+++|++|++++|. +.. +|..+
T Consensus 23 ~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l-------~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSL-------INVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEE-------ESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHH
T ss_pred cccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeC-------cCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHH
Confidence 4567777777776320 224554667777777777 66666666 567777777777777777 555 66666
Q ss_pred hccCcCcEeecCCccccccCc--ccccCCCCCcEeecCCCCCCCcccc----cccCcccccccCceEecCc
Q 039861 280 CELHNLERLNVDDCENLRELP--RGIGKLRKLMYIDNDDTDSLRYLPV----GIGELIRLRRVTKLVVGGG 344 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~~ 344 (557)
..+++|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+...
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 667777777777765 66655 56677777777777777 4555554 5667777777777665543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=4e-13 Score=126.39 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=115.8
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++ . +..+++|+.|++++|.+ ... |. +..+++|++|++ ++|.+..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-~----l~~l~~L~~L~L~~N~i---~~~-~~-l~~l~~L~~L~L-------~~N~l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-G----MQFFTNLKELHLSHNQI---SDL-SP-LKDLTKLEELSV-------NRNRLKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-T----GGGCTTCCEEECCSSCC---CCC-GG-GTTCSSCCEEEC-------CSSCCSCCTTC
T ss_pred CcCcEEECcCCCcccch-H----HhhCCCCCEEECCCCcc---CCC-hh-hccCCCCCEEEC-------CCCccCCcCcc
Confidence 66788888877776655 2 33488999999999874 332 33 888999999999 88888888754
Q ss_pred hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCccccc
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLR 334 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~ 334 (557)
.. .+|++|++++|. +..+|. +..+++|++|++++|. +..+| .++.+++|++|++++| .+..+ ..+..+++|+
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVN 175 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCC
T ss_pred cc--CcccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCC
Confidence 33 899999999998 888864 8899999999999977 77776 6888999999999998 55555 5688888999
Q ss_pred ccCceEecCcc
Q 039861 335 RVTKLVVGGGY 345 (557)
Q Consensus 335 ~L~~~~~~~~~ 345 (557)
.|++.++....
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99988887654
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=2.7e-13 Score=142.39 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=125.0
Q ss_pred cCceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch
Q 039861 174 EKKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT 253 (557)
Q Consensus 174 ~~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~ 253 (557)
...++.|.+..+.+..++. +.++++|+.|++++|.+.. +| .+..+++|+.|+| ++|.+..+|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~----l~-~l~~l~~L~~L~L-------s~N~l~~l~- 125 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKIKD----LS-SLKDLKKLKSLSL-------EHNGISDIN- 125 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCCC----CT-TSTTCTTCCEEEC-------TTSCCCCCG-
T ss_pred CCCCCEEEeeCCCCCCChh-----hccCCCCCEEECcCCCCCC----Ch-hhccCCCCCEEEe-------cCCCCCCCc-
Confidence 3789999999888877655 3449999999999998543 34 4889999999999 888888875
Q ss_pred hhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL 333 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 333 (557)
.++.+++|+.|+|++|. +..++ .++.+++|++|+|++|. +..++. +..+++|++|++++| .+..+| .+..+++|
T Consensus 126 ~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L 199 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNL 199 (605)
T ss_dssp GGGGCTTCSEEECCSSC-CCCCG-GGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTC
T ss_pred cccCCCccCEEECCCCc-cCCch-hhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCC
Confidence 58999999999999998 88884 59999999999999987 667665 999999999999999 666665 68899999
Q ss_pred cccCceEecCcc
Q 039861 334 RRVTKLVVGGGY 345 (557)
Q Consensus 334 ~~L~~~~~~~~~ 345 (557)
+.|++..+....
T Consensus 200 ~~L~L~~N~l~~ 211 (605)
T 1m9s_A 200 DVLELFSQECLN 211 (605)
T ss_dssp SEEECCSEEEEC
T ss_pred CEEEccCCcCcC
Confidence 999998877654
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=2.6e-13 Score=146.06 Aligned_cols=156 Identities=22% Similarity=0.219 Sum_probs=85.2
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccc-hhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSW-SSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~ 253 (557)
..++++.+..+.....+..... ...|+.+.+....... .....|..|..+..|++|+| ++|.+..+|.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~----~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~L-------s~n~l~~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQ----HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDL-------SNLQIFNISA 241 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEEC-------TTSCCSCCCG
T ss_pred CccceEEeeCCCCCcchhhHhh----cCccCcccccCccccccceecChhhhccCCCCcEEEC-------CCCCCCCCCh
Confidence 4566677666655543333322 2223332222211000 11234666777888888888 7777778887
Q ss_pred hhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRL 333 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L 333 (557)
.+..+.+|++|+|++|. +..+|..|+++++|++|+|++|. +..+|..++.|++|++|++++| .++.+|..++.|++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 77788888888888887 77888778888888888888876 6677888888888888888887 566778778888888
Q ss_pred cccCceEecCc
Q 039861 334 RRVTKLVVGGG 344 (557)
Q Consensus 334 ~~L~~~~~~~~ 344 (557)
+.|++.+|...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 88877766554
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1e-13 Score=118.38 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=93.6
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccc-cchhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEK-LPETL 279 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~~ 279 (557)
.++|+.|++.+|.+.. +.+|..+..+++|++|++ ++|.+..+ ..++.+++|++|++++|. +.. +|..+
T Consensus 16 ~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l-------~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLST-------INVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEEC-------TTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHH
T ss_pred CccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEEC-------cCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHh
Confidence 5678888888887421 235556778888888888 77777777 668888888888888888 665 77777
Q ss_pred hccCcCcEeecCCccccccCc--ccccCCCCCcEeecCCCCCCCcccc----cccCcccccccCc
Q 039861 280 CELHNLERLNVDDCENLRELP--RGIGKLRKLMYIDNDDTDSLRYLPV----GIGELIRLRRVTK 338 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~ 338 (557)
+.+++|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 778888888888877 66654 67788888888888888 5555554 4667777777765
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=8.1e-13 Score=124.29 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=88.1
Q ss_pred HhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCccccc
Q 039861 225 FDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIG 304 (557)
Q Consensus 225 ~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~ 304 (557)
+..+++|++|++ +++.+..+| .++.+++|++|++++|. +..+|. +..+++|++|++++|. +..+|....
T Consensus 37 ~~~l~~L~~L~l-------~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~ 105 (263)
T 1xeu_A 37 QKELSGVQNFNG-------DNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS 105 (263)
T ss_dssp HHHHTTCSEEEC-------TTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC
T ss_pred hhhcCcCcEEEC-------cCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc
Confidence 455666666666 555565555 46666666666666665 666655 6666666666666654 555554222
Q ss_pred CCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhccC
Q 039861 305 KLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEK 384 (557)
Q Consensus 305 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 384 (557)
++|++|++++| .+..++ .++.+++|+.|++.++.... +..+..+++|+.|++++..-. .
T Consensus 106 --~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~-----~~~l~~l~~L~~L~L~~N~i~-~----------- 164 (263)
T 1xeu_A 106 --ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKS-----IVMLGFLSKLEVLDLHGNEIT-N----------- 164 (263)
T ss_dssp --SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCB-----CGGGGGCTTCCEEECTTSCCC-B-----------
T ss_pred --CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCC-----ChHHccCCCCCEEECCCCcCc-c-----------
Confidence 66666666666 444443 35566666666655554432 234555566666666543211 0
Q ss_pred CCCCchHHhhhhcCCCCCCccEEEEeecCCcC
Q 039861 385 KKNLDEDERLLEALGPPPNLKKLQIYDYRGRR 416 (557)
Q Consensus 385 l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 416 (557)
...+..+++|+.|++++|....
T Consensus 165 ----------~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 ----------TGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ----------CTTSTTCCCCCEEEEEEEEEEC
T ss_pred ----------hHHhccCCCCCEEeCCCCcccC
Confidence 1345667899999999988665
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=3.1e-13 Score=122.53 Aligned_cols=148 Identities=25% Similarity=0.395 Sum_probs=82.1
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+..+....++... +.++++|++|++.+|.+ ....+..|..+++|++|++ ++|.+..+|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L-------s~n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNKL---QSLPNGVFNKLTSLTYLNL-------STNQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTT
T ss_pred CCCcEEEcCCCccCcCChhh---hcccccCcEEECCCCcc---CccChhhcCCCCCcCEEEC-------CCCcCCccCHh
Confidence 45666666666555444332 22366666666666653 2333344556666666666 66666665543
Q ss_pred -hhcccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCcccccccCcc
Q 039861 255 -IEKLLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYLPVGIGELI 331 (557)
Q Consensus 255 -~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~L~ 331 (557)
++.+.+|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|... +.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 4666666666666665 555553 35566666666666654 4444443 456666666666666221 2334
Q ss_pred cccccCceEecCc
Q 039861 332 RLRRVTKLVVGGG 344 (557)
Q Consensus 332 ~L~~L~~~~~~~~ 344 (557)
+|+.|....+...
T Consensus 166 ~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 166 GIRYLSEWINKHS 178 (208)
T ss_dssp TTHHHHHHHHHCT
T ss_pred CHHHHHHHHHhCC
Confidence 4555554444433
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=4.4e-13 Score=117.02 Aligned_cols=133 Identities=25% Similarity=0.266 Sum_probs=111.7
Q ss_pred CceEEEEEEecCCC--CcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccc-c
Q 039861 175 KKIRHLMLIVRGRA--SVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE-I 251 (557)
Q Consensus 175 ~~~r~l~l~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~-l 251 (557)
..++.+.+..+... .++..+ ..+++|++|++.+|.+... ..+..+++|++|++ ++|.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~----~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~L-------s~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT----AEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLEL-------SENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC----GGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEE-------ESCCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHH----HhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEEC-------cCCcCchHH
Confidence 67899999888776 555443 3499999999999985433 44888999999999 8888887 7
Q ss_pred chhhhcccCCCeeecccCCcccccc--hhhhccCcCcEeecCCccccccCcc----cccCCCCCcEeecCCCCCCCcccc
Q 039861 252 PTNIEKLLHLKYLNLKSQNKIEKLP--ETLCELHNLERLNVDDCENLRELPR----GIGKLRKLMYIDNDDTDSLRYLPV 325 (557)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~ 325 (557)
|..++.+++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++| ....+|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 8888889999999999998 88887 689999999999999987 777776 7899999999999999 5666665
Q ss_pred c
Q 039861 326 G 326 (557)
Q Consensus 326 ~ 326 (557)
+
T Consensus 165 ~ 165 (168)
T 2ell_A 165 S 165 (168)
T ss_dssp S
T ss_pred c
Confidence 4
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=6.8e-13 Score=120.29 Aligned_cols=143 Identities=27% Similarity=0.427 Sum_probs=112.2
Q ss_pred EEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh-hhcccC
Q 039861 182 LIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN-IEKLLH 260 (557)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~-~~~l~~ 260 (557)
...+....+|..+ .++|+.|++.+|.+ ....+..|..+++|++|++ ++|.++.+|.. ++.+.+
T Consensus 14 c~~~~l~~~p~~~------~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~~l~~ 77 (208)
T 2o6s_A 14 CYSQGRTSVPTGI------PAQTTYLDLETNSL---KSLPNGVFDELTSLTQLYL-------GGNKLQSLPNGVFNKLTS 77 (208)
T ss_dssp CCSSCCSSCCSCC------CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEEC-------CSSCCCCCCTTTTTTCTT
T ss_pred ecCCCccCCCCCC------CCCCcEEEcCCCcc---CcCChhhhcccccCcEEEC-------CCCccCccChhhcCCCCC
Confidence 3334444555433 55899999999984 3445566889999999999 88889888754 689999
Q ss_pred CCeeecccCCcccccch-hhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCccccc-ccCcccccccC
Q 039861 261 LKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYLPVG-IGELIRLRRVT 337 (557)
Q Consensus 261 L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~ 337 (557)
|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. ++.+++|+.|+
T Consensus 78 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 78 LTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred cCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEE
Confidence 9999999998 888875 46899999999999987 6777665 689999999999999 55566654 77888888888
Q ss_pred ceEecC
Q 039861 338 KLVVGG 343 (557)
Q Consensus 338 ~~~~~~ 343 (557)
+..+..
T Consensus 155 l~~N~~ 160 (208)
T 2o6s_A 155 LHDNPW 160 (208)
T ss_dssp CCSCCB
T ss_pred ecCCCe
Confidence 776643
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=1.8e-13 Score=135.52 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=130.4
Q ss_pred CCcceEEEeccCCccchh-hhhHHHHhcCC-ceeEEEeccccCCCCcCccccc-chhhhcc-----cCCCeeecccCCcc
Q 039861 201 LRGLRSFLVKSDEYSWSS-EVLPQLFDKLT-CLRALNLKVRKPWSSVNDIKEI-PTNIEKL-----LHLKYLNLKSQNKI 272 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~-~~~p~~~~~l~-~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l-----~~L~~L~L~~~~~l 272 (557)
.++|+.|++++|.+.... ..+...|..++ +|++|+| ++|.+... +..++.+ .+|++|++++|. +
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-------s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNL-------SGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEEC-------CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEEC-------cCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 445888888887743211 11125567777 7888888 77777654 4455554 778888888887 6
Q ss_pred cccc-hhhhc----c-CcCcEeecCCccccccCcc-c----ccC-CCCCcEeecCCCCCCC----cccccccCcc-cccc
Q 039861 273 EKLP-ETLCE----L-HNLERLNVDDCENLRELPR-G----IGK-LRKLMYIDNDDTDSLR----YLPVGIGELI-RLRR 335 (557)
Q Consensus 273 ~~lp-~~~~~----l-~~L~~L~l~~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~l~----~~p~~i~~L~-~L~~ 335 (557)
...+ ..+.. + ++|++|++++|. +...+. . +.. .++|++|++++|.... .++..+..+. +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 5443 43333 3 778888888877 444432 2 233 2578888888773221 2333344444 7777
Q ss_pred cCceEecCccCCccCcc-ccccC-CcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhhcCCC-CCCccEEEEeec
Q 039861 336 VTKLVVGGGYDRACSLG-SLKKL-NLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLEALGP-PPNLKKLQIYDY 412 (557)
Q Consensus 336 L~~~~~~~~~~~~~~l~-~L~~L-~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~l~~-~~~L~~L~l~~~ 412 (557)
|++..+.........+. .+... ++|+.|++++..- .... ...+...+.. .++|++|++++|
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~---------------~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKS---------------YAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSC---------------HHHHHHHHHHSCTTCCEEECCSS
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC-ChhH---------------HHHHHHHHhcCCCCceEEECcCC
Confidence 77766655432222221 23344 3666677665431 1100 0112222222 357888888877
Q ss_pred CCcCCCCCcccccCccccCccccCCCCCCCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccc
Q 039861 413 RGRRNVVPKNWIMDLSLFRCRNCEHLPPLGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNME 492 (557)
Q Consensus 413 ~~~~~~~~~~~l~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 492 (557)
.+.. .++..+. ..+..+++|++|++++|. +..+........ ...+..+++|+.|+++++.
T Consensus 236 ~l~~--~~~~~l~-------------~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l----~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 236 CLHG--PSLENLK-------------LLKDSLKHLQTVYLDYDI-VKNMSKEQCKAL----GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCC--CCHHHHH-------------HTTTTTTTCSEEEEEHHH-HTTCCHHHHHHH----HTTSTTCCEEEEECTTSCB
T ss_pred CCCc--HHHHHHH-------------HHHhcCCCccEEEeccCC-ccccCHHHHHHH----HHHhccCCceEEEecCCCc
Confidence 6544 1110000 113566778888887764 111111100000 0012356778888887754
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=2.9e-13 Score=133.84 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=75.2
Q ss_pred cceEEEeccCCccchhhhhHHHHh-cCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccc-hhh
Q 039861 203 GLRSFLVKSDEYSWSSEVLPQLFD-KLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP-ETL 279 (557)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~ 279 (557)
.++.|++++|.+ ....+..|. .+++|++|+| ++|.+..++ ..+..+.+|++|+|++|. +..+| ..+
T Consensus 40 ~l~~L~Ls~N~l---~~l~~~~~~~~l~~L~~L~L-------~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNNL---SRLRAEWTPTRLTNLHSLLL-------SHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSCC---CEECTTSSSSCCTTCCEEEC-------CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred CCCEEECCCCCC---CccChhhhhhcccccCEEEC-------CCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 456666666653 233333344 6666666666 666666665 346666666666666666 55554 345
Q ss_pred hccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccc----cCcccccccCceEecCc
Q 039861 280 CELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGI----GELIRLRRVTKLVVGGG 344 (557)
Q Consensus 280 ~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i----~~L~~L~~L~~~~~~~~ 344 (557)
..+++|++|++++|......|..+..+++|++|++++| .+..+|..+ +.+++|+.|++.++...
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 66666666666666522223445666666666666666 455555443 44666666666555443
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=9.5e-13 Score=115.79 Aligned_cols=128 Identities=19% Similarity=0.181 Sum_probs=102.5
Q ss_pred CCCcceEEEeccCCccchhhhhHHHHhcCC-ceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchh
Q 039861 200 GLRGLRSFLVKSDEYSWSSEVLPQLFDKLT-CLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPET 278 (557)
Q Consensus 200 ~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~-~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~ 278 (557)
++.+|+.|++.+|.+.. +|. +..+. +|++|++ ++|.+..+ ..++.+++|++|++++|. +..+|..
T Consensus 17 ~~~~L~~L~l~~n~l~~----i~~-~~~~~~~L~~L~L-------s~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV----IEN-LGATLDQFDAIDF-------SDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEG 82 (176)
T ss_dssp CTTSCEEEECTTSCCCS----CCC-GGGGTTCCSEEEC-------CSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSC
T ss_pred CcCCceEEEeeCCCCch----hHH-hhhcCCCCCEEEC-------CCCCCCcc-cccccCCCCCEEECCCCc-ccccCcc
Confidence 37889999999987542 344 44444 8999999 88888887 578889999999999998 8888754
Q ss_pred h-hccCcCcEeecCCccccccCcc--cccCCCCCcEeecCCCCCCCccccc----ccCcccccccCceEecC
Q 039861 279 L-CELHNLERLNVDDCENLRELPR--GIGKLRKLMYIDNDDTDSLRYLPVG----IGELIRLRRVTKLVVGG 343 (557)
Q Consensus 279 ~-~~l~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~~ 343 (557)
+ +.+++|++|++++|. +..+|. .++.+++|++|++++| .+..+|.. ++.+++|+.|++..+..
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4 889999999999977 788886 7888999999999998 56677764 77888888888877654
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=4.4e-12 Score=115.79 Aligned_cols=129 Identities=26% Similarity=0.392 Sum_probs=110.6
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.|.+..+.+..++.. .|.++++|+.|++++|. +....|..|.++++|++|+| ++|.+..+|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~---~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~L-------s~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG---AFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVL-------YGNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECTT---SSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEEC-------CSSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCHh---HhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEEC-------CCCcCCccCHh
Confidence 6789999999888766653 34559999999999998 44555778999999999999 99999999865
Q ss_pred -hhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCC
Q 039861 255 -IEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTD 318 (557)
Q Consensus 255 -~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 318 (557)
+..+.+|++|+|++|. +..+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 6899999999999999 7777 5779999999999999987 666665 58899999999999984
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=6e-12 Score=115.73 Aligned_cols=130 Identities=22% Similarity=0.348 Sum_probs=111.4
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.|.+..+.+..++.. .+.++++|+.|++++|.+ ....+..|..+++|++|+| ++|.+..+|..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~L-------s~N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPG---VFDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDL-------GTNQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEEC-------CSSCCCCCCTT
T ss_pred CCCCEEEcCCCccCccCHH---HhhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEEC-------CCCcCCccChh
Confidence 7899999999988776543 344599999999999984 4444566889999999999 99999998755
Q ss_pred -hhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCCCCC
Q 039861 255 -IEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDDTDS 319 (557)
Q Consensus 255 -~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 319 (557)
++.+.+|++|++++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|++|++++|..
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6899999999999999 99999999999999999999987 777775 478999999999999843
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=2.6e-12 Score=133.37 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=87.1
Q ss_pred ceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhh
Q 039861 176 KIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNI 255 (557)
Q Consensus 176 ~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~ 255 (557)
.++.+.+..+....+|..+ +++|+.|++++|.+. . +| ..+++|++|++ ++|.++.+|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l------~~~L~~L~Ls~N~l~---~-ip---~~l~~L~~L~L-------s~N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL------PPQITVLEITQNALI---S-LP---ELPASLEYLDA-------CDNRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC------CTTCSEEECCSSCCS---C-CC---CCCTTCCEEEC-------CSSCCSCCCC-C
T ss_pred CccEEEeCCCCCCccCHhH------cCCCCEEECcCCCCc---c-cc---cccCCCCEEEc-------cCCCCCCcch-h
Confidence 4566666666665555433 356777777777632 2 44 34677777777 6677777776 5
Q ss_pred hcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccc
Q 039861 256 EKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRR 335 (557)
Q Consensus 256 ~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~ 335 (557)
+. +|++|++++|. +..+|. .+++|++|++++|. +..+|. .+++|++|++++| .++.+|. ++ ++|+.
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEA 184 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCE
T ss_pred hc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCE
Confidence 44 77777777776 666776 56777777777766 566665 4667777777777 4555666 54 66777
Q ss_pred cCceEecCc
Q 039861 336 VTKLVVGGG 344 (557)
Q Consensus 336 L~~~~~~~~ 344 (557)
|++.++...
T Consensus 185 L~Ls~N~L~ 193 (571)
T 3cvr_A 185 LDVSTNLLE 193 (571)
T ss_dssp EECCSSCCS
T ss_pred EECcCCCCC
Confidence 766665544
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=1.7e-12 Score=110.78 Aligned_cols=124 Identities=26% Similarity=0.311 Sum_probs=103.8
Q ss_pred CceEEEEEEecCCC--CcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccc-c
Q 039861 175 KKIRHLMLIVRGRA--SVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE-I 251 (557)
Q Consensus 175 ~~~r~l~l~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~-l 251 (557)
..++.+.+..+... .++.. +..+++|+.|++.+|.+... ..+..+++|++|++ ++|.+.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~L-------s~n~i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLEL-------SDNRVSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEEC-------CSSCCCSCT
T ss_pred ccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEEC-------CCCcccchH
Confidence 67888888887766 44443 34499999999999985433 44888999999999 8888887 8
Q ss_pred chhhhcccCCCeeecccCCcccccc--hhhhccCcCcEeecCCccccccCcc----cccCCCCCcEeecCC
Q 039861 252 PTNIEKLLHLKYLNLKSQNKIEKLP--ETLCELHNLERLNVDDCENLRELPR----GIGKLRKLMYIDNDD 316 (557)
Q Consensus 252 p~~~~~l~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~ 316 (557)
|..++.+++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 8888889999999999999 88875 789999999999999987 777775 689999999999863
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=5.6e-13 Score=143.53 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=101.2
Q ss_pred cCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccch
Q 039861 198 VKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPE 277 (557)
Q Consensus 198 ~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 277 (557)
+.+++.|+.|++++|.+. . +|..+..+++|++|+| ++|.+..+|..+++|.+|++|+|++|. +..+|.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~---~-l~~~~~~l~~L~~L~L-------s~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF---N-ISANIFKYDFLTRLYL-------NGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp --CCCCCCEEECTTSCCS---C-CCGGGGGCCSCSCCBC-------TTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred hccCCCCcEEECCCCCCC---C-CChhhcCCCCCCEEEe-------eCCcCcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence 445899999999999843 3 4555668999999999 899999999999999999999999999 889999
Q ss_pred hhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcccccc
Q 039861 278 TLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGI 327 (557)
Q Consensus 278 ~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 327 (557)
.+++|++|++|+|++|. +..+|..+++|++|++|++++|.....+|..+
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999999999986 78999999999999999999996554555544
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=1.4e-12 Score=128.95 Aligned_cols=154 Identities=20% Similarity=0.246 Sum_probs=121.7
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT- 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~- 253 (557)
..++.|.+..+.+..++...+. .++++|+.|++++|.+ ....|..|..+++|++|+| ++|.+..+|.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~--~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~L-------s~N~l~~~~~~ 106 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHL---NFISSEAFVPVPNLRYLDL-------SSNHLHTLDEF 106 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSS--SCCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEEC-------CSSCCCEECTT
T ss_pred CCCCEEECCCCCCCccChhhhh--hcccccCEEECCCCcC---CccChhhccCCCCCCEEEC-------CCCcCCcCCHH
Confidence 5688899999888776655431 1499999999999984 4445667999999999999 9999998875
Q ss_pred hhhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCcccc----cCCCCCcEeecCCCCCCCcccc-cc
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELPRGI----GKLRKLMYIDNDDTDSLRYLPV-GI 327 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~~p~-~i 327 (557)
.+..+.+|++|+|++|. +..+ |..+..+++|++|++++|. +..+|..+ ..+++|++|++++| .+..+|. .+
T Consensus 107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 183 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDL 183 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHH
T ss_pred HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHh
Confidence 58999999999999999 7776 5789999999999999987 88888765 67999999999999 5666663 45
Q ss_pred cCccc--ccccCceEecC
Q 039861 328 GELIR--LRRVTKLVVGG 343 (557)
Q Consensus 328 ~~L~~--L~~L~~~~~~~ 343 (557)
..+.. ++.|++.++.+
T Consensus 184 ~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHSCHHHHTTEECCSSCE
T ss_pred hhccHhhcceEEecCCCc
Confidence 55554 35565555443
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=4.9e-12 Score=115.47 Aligned_cols=131 Identities=17% Similarity=0.219 Sum_probs=108.8
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT- 253 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~- 253 (557)
..++.|.+..+.+..++.. ..|.++++|++|++++|.+ ....+..|..+++|++|+| ++|.+..+|.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~L-------s~N~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKI---TDIEEGAFEGASGVNEILL-------TSNRLENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEEC-------CSSCCCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCcC---CEECHHHhCCCCCCCEEEC-------CCCccCccCHh
Confidence 5578888888888765321 1234599999999999984 4445667999999999999 9999998875
Q ss_pred hhhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccC-cccccCCCCCcEeecCCCCC
Q 039861 254 NIEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLREL-PRGIGKLRKLMYIDNDDTDS 319 (557)
Q Consensus 254 ~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 319 (557)
.++.+.+|++|+|++|. +..+ |..+..+++|++|++++|. +..+ |..+..+++|++|++++|..
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 48999999999999999 7776 6789999999999999988 5555 77899999999999999943
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=4.9e-12 Score=131.97 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=114.7
Q ss_pred cCCCCcceEEE-eccCCccchhhh--hHHHHhc--CCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcc
Q 039861 198 VKGLRGLRSFL-VKSDEYSWSSEV--LPQLFDK--LTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKI 272 (557)
Q Consensus 198 ~~~l~~L~~L~-l~~~~~~~~~~~--~p~~~~~--l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l 272 (557)
+.++++|+.|+ +..+.+...... ....+.. ...|++|+| ++|.++.+|. ++.+.+|++|+|++|. +
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~L-------s~n~l~~lp~-~~~l~~L~~L~Ls~N~-l 475 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL-------AHKDLTVLCH-LEQLLLVTHLDLSHNR-L 475 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEEC-------TTSCCSSCCC-GGGGTTCCEEECCSSC-C
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEe-------cCCCCCCCcC-ccccccCcEeecCccc-c
Confidence 34577788887 454432111100 0001111 236999999 8999999997 9999999999999998 8
Q ss_pred cccchhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCCCCcc--cccccCcccccccCceEecCccCCccC
Q 039861 273 EKLPETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYL--PVGIGELIRLRRVTKLVVGGGYDRACS 350 (557)
Q Consensus 273 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~--p~~i~~L~~L~~L~~~~~~~~~~~~~~ 350 (557)
..+|..++.+++|++|++++|. +..+| .++.+++|++|++++| .+..+ |..++.+++|+.|++.++......+..
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred cccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 8999999999999999999987 77898 8999999999999999 55666 889999999999999888776533322
Q ss_pred ccccccCCcCCCc
Q 039861 351 LGSLKKLNLLREC 363 (557)
Q Consensus 351 l~~L~~L~~L~~l 363 (557)
..-...+++|+.|
T Consensus 553 ~~l~~~lp~L~~L 565 (567)
T 1dce_A 553 ERLAEMLPSVSSI 565 (567)
T ss_dssp THHHHHCTTCSEE
T ss_pred HHHHHHCcccCcc
Confidence 2223335555554
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=6.1e-12 Score=131.25 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=109.0
Q ss_pred hhhHHHHhcCCceeEEE-eccccCCCCcCcccccch------hhhcc--cCCCeeecccCCcccccchhhhccCcCcEee
Q 039861 219 EVLPQLFDKLTCLRALN-LKVRKPWSSVNDIKEIPT------NIEKL--LHLKYLNLKSQNKIEKLPETLCELHNLERLN 289 (557)
Q Consensus 219 ~~~p~~~~~l~~L~~L~-L~~~~~~~~~~~l~~lp~------~~~~l--~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 289 (557)
+..|..++.+++|+.|+ + +.+.+..++. .+..+ ..|++|++++|. +..+|. ++.+++|++|+
T Consensus 399 ~~~~~~l~~l~~L~~L~~l-------~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~ 469 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPM-------RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLD 469 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGG-------GHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEE
T ss_pred cCCHHHHHHHHhcccCcch-------hhcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEee
Confidence 34677888999999998 6 4444444332 12222 369999999998 999998 99999999999
Q ss_pred cCCccccccCcccccCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCC
Q 039861 290 VDDCENLRELPRGIGKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLG 369 (557)
Q Consensus 290 l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 369 (557)
+++|. +..+|..++.+++|++|++++| .++.+| .++.+++|+.|++.++...... ....+..+++|+.|.+++..
T Consensus 470 Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 470 LSHNR-LRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSG
T ss_pred cCccc-ccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEEEecCCc
Confidence 99987 7799999999999999999999 667788 8999999999999888766521 14566778888888887653
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=109.59 Aligned_cols=103 Identities=19% Similarity=0.333 Sum_probs=55.8
Q ss_pred CceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcc-cccCC
Q 039861 229 TCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR-GIGKL 306 (557)
Q Consensus 229 ~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L 306 (557)
++|++|++ ++|.+..+|..+..+.+|++|++++|. +..++ ..|..+++|++|++++|. +..+|. .+..+
T Consensus 31 ~~l~~L~L-------~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l 101 (193)
T 2wfh_A 31 RDVTELYL-------DGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGL 101 (193)
T ss_dssp TTCCEEEC-------CSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTC
T ss_pred CCCCEEEC-------CCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCC
Confidence 35556666 555555565556666666666666655 55544 345566666666666655 444332 35556
Q ss_pred CCCcEeecCCCCCCCccccc-ccCcccccccCceEe
Q 039861 307 RKLMYIDNDDTDSLRYLPVG-IGELIRLRRVTKLVV 341 (557)
Q Consensus 307 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~ 341 (557)
++|++|++++| .+..+|.. +..+++|+.|++.++
T Consensus 102 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 102 KSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 66666666665 34444432 445555555544443
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=1e-11 Score=110.79 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=50.8
Q ss_pred ceeEEEeccccCCCCcCcccccchh--hhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCc-ccccC
Q 039861 230 CLRALNLKVRKPWSSVNDIKEIPTN--IEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELP-RGIGK 305 (557)
Q Consensus 230 ~L~~L~L~~~~~~~~~~~l~~lp~~--~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~ 305 (557)
.|++|++ ++|.+..+|.. ++.+++|++|+|++|. +..+ |..+..+++|++|++++|. +..++ ..+..
T Consensus 30 ~l~~L~l-------~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 100 (192)
T 1w8a_A 30 HTTELLL-------NDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLG 100 (192)
T ss_dssp TCSEEEC-------CSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTT
T ss_pred CCCEEEC-------CCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcC
Confidence 4555555 55555555432 5555555555555555 4443 4445555555555555544 33332 23455
Q ss_pred CCCCcEeecCCCCCCCcccccccCcccccccCceEe
Q 039861 306 LRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVV 341 (557)
Q Consensus 306 L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 341 (557)
+++|++|++++|......|..++.+++|+.|++.++
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 555555555555332233444445555555444333
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=7.7e-12 Score=109.93 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=106.3
Q ss_pred CceEEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN 254 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~ 254 (557)
..++.+.+.++....++. +.. ..++|+.|++++|.+..+ ..|..+++|++|++ ++|.+..+|..
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~---~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~L-------s~N~l~~~~~~ 82 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGA---TLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLV-------NNNRICRIGEG 82 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGG---GTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEEC-------CSSCCCEECSC
T ss_pred CCceEEEeeCCCCchhHH-hhh---cCCCCCEEECCCCCCCcc-----cccccCCCCCEEEC-------CCCcccccCcc
Confidence 678999998888876643 222 134999999999985433 34888999999999 99999999866
Q ss_pred h-hcccCCCeeecccCCcccccch--hhhccCcCcEeecCCccccccCccc----ccCCCCCcEeecCCCC
Q 039861 255 I-EKLLHLKYLNLKSQNKIEKLPE--TLCELHNLERLNVDDCENLRELPRG----IGKLRKLMYIDNDDTD 318 (557)
Q Consensus 255 ~-~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 318 (557)
+ +.+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|++++|.
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5 999999999999998 899987 89999999999999987 7788875 8999999999999883
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=1.3e-11 Score=110.11 Aligned_cols=125 Identities=23% Similarity=0.348 Sum_probs=100.8
Q ss_pred EEEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHH-HHhcCCceeEEEeccccCCCCcCccccc-chhh
Q 039861 178 RHLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQ-LFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNI 255 (557)
Q Consensus 178 r~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~ 255 (557)
+.+.+..+....+|..+ ...+++|++.+|.+ ....+. .|..+++|++|+| ++|.++.+ |..+
T Consensus 11 ~~l~~s~~~l~~ip~~~------~~~l~~L~l~~n~i---~~~~~~~~~~~l~~L~~L~L-------s~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI------PLHTTELLLNDNEL---GRISSDGLFGRLPHLVKLEL-------KRNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSCCSSCCSCC------CTTCSEEECCSCCC---CSBCCSCSGGGCTTCCEEEC-------CSSCCCCBCTTTT
T ss_pred CEEEcCCCCcCcCccCC------CCCCCEEECCCCcC---CccCCccccccCCCCCEEEC-------CCCCCCCcCHhHc
Confidence 34555556666666644 33899999999984 333332 4889999999999 89999887 6789
Q ss_pred hcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcccccCCCCCcEeecCCCCC
Q 039861 256 EKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDTDS 319 (557)
Q Consensus 256 ~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 319 (557)
+.+.+|++|+|++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++++|..
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 999999999999999 77776 4588999999999999885555678899999999999999954
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=4.9e-13 Score=120.15 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhh
Q 039861 201 LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLC 280 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 280 (557)
+++|++|++++|.+. . +| .+..+++|++|++ ++|.+..+|..++.+++|++|++++|. +..+| .++
T Consensus 47 l~~L~~L~ls~n~l~---~-l~-~~~~l~~L~~L~l-------~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~ 112 (198)
T 1ds9_A 47 LKACKHLALSTNNIE---K-IS-SLSGMENLRILSL-------GRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIE 112 (198)
T ss_dssp TTTCSEEECSEEEES---C-CC-CHHHHTTCCEEEE-------EEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHH
T ss_pred CCCCCEEECCCCCCc---c-cc-ccccCCCCCEEEC-------CCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccc
Confidence 667777777776532 2 34 4666777777777 666666677666666777777777776 66666 466
Q ss_pred ccCcCcEeecCCccccccCcc--cccCCCCCcEeecCCC
Q 039861 281 ELHNLERLNVDDCENLRELPR--GIGKLRKLMYIDNDDT 317 (557)
Q Consensus 281 ~l~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~ 317 (557)
.+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 77777777777765 555443 4666777777777776
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=9.5e-14 Score=124.81 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=98.5
Q ss_pred hHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCc
Q 039861 221 LPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELP 300 (557)
Q Consensus 221 ~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 300 (557)
+|..|..+++|++|++ ++|.+..+| .++.+++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~l-------s~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLAL-------STNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEEC-------SEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEEC-------CCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 5668999999999999 888899998 89999999999999998 89999988899999999999986 77787
Q ss_pred ccccCCCCCcEeecCCCCCCCcccc--cccCcccccccCceEecCcc
Q 039861 301 RGIGKLRKLMYIDNDDTDSLRYLPV--GIGELIRLRRVTKLVVGGGY 345 (557)
Q Consensus 301 ~~i~~L~~L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~ 345 (557)
.++.+++|++|++++| .+..+|. .++.+++|+.|++.++....
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 6899999999999998 5666554 68889999999888776543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=3.3e-11 Score=106.00 Aligned_cols=122 Identities=29% Similarity=0.451 Sum_probs=81.8
Q ss_pred EEEEEecCCCCcccccccccCCCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchh-hhc
Q 039861 179 HLMLIVRGRASVPISIWDNVKGLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTN-IEK 257 (557)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~-~~~ 257 (557)
.+....+....+|..+ .+.|+.|++.+|.+ ....+..|..+++|++|++ ++|.+..+|.. ++.
T Consensus 11 ~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l-------~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI------PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSL-------SQNQIQSLPDGVFDK 74 (177)
T ss_dssp EEECCSSCCSSCCTTC------CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEEC-------CSSCCCCCCTTTTTT
T ss_pred EEEecCCCCccCCCCC------CCCCcEEEeCCCcc---cEeCHHHhcCcccccEEEC-------CCCcceEeChhHccC
Confidence 3444444455544332 35677788877763 3334455677788888888 77777777644 577
Q ss_pred ccCCCeeecccCCcccccch-hhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCC
Q 039861 258 LLHLKYLNLKSQNKIEKLPE-TLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTD 318 (557)
Q Consensus 258 l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 318 (557)
+.+|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 7888888888777 666664 35777888888888765 6666655 3667788888887774
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.2e-10 Score=103.68 Aligned_cols=123 Identities=16% Similarity=0.228 Sum_probs=99.0
Q ss_pred eEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCcccccchhhhccCcCcEeecCCccccccCc-ccccCCCCCc
Q 039861 232 RALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKLPETLCELHNLERLNVDDCENLRELP-RGIGKLRKLM 310 (557)
Q Consensus 232 ~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~ 310 (557)
+++++ +++.++.+|..+. .+|++|++++|. +..+|..+..+++|++|++++|. +..++ ..+..+++|+
T Consensus 13 ~~l~~-------~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRC-------SNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEEC-------TTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CEEEc-------CCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCC
Confidence 56788 8888999997664 689999999998 99999999999999999999988 66665 4689999999
Q ss_pred EeecCCCCCCCccc-ccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCC
Q 039861 311 YIDNDDTDSLRYLP-VGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLG 369 (557)
Q Consensus 311 ~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 369 (557)
+|++++| .+..++ ..++.+++|+.|++.++........ .+..+++|+.+.+.+..
T Consensus 82 ~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 82 TLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSC
T ss_pred EEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCC
Confidence 9999999 455555 4689999999999988876653332 24456667777776543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=2.1e-10 Score=111.70 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=60.0
Q ss_pred CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccc-cccccccccccccccccccccccccCCccceeeec
Q 039861 441 LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLK-KLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQ 519 (557)
Q Consensus 441 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 519 (557)
+.++++|+.|++.+. ++.++...+ .++++|+ .+.+.+ .++.+.. ..+..+++|+.|++.
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~~~aF-----------~~~~~L~~~l~l~~--~l~~I~~-----~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIGQRVF-----------SNCGRLAGTLELPA--SVTAIEF-----GAFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTT-----------TTCTTCCEEEEECT--TCCEECT-----TTTTTCTTEEEEEEC
T ss_pred hhCCCCCCEEECCcc--cceehHHHh-----------hCChhccEEEEEcc--cceEEch-----hhhhCCccCCEEEeC
Confidence 778889999999874 777765433 3577888 888876 5555543 678889999999998
Q ss_pred cCccccCCCC-CcCCCCCcceEE
Q 039861 520 SCPKLKALPD-HLLQKSTLQKLE 541 (557)
Q Consensus 520 ~c~~l~~lp~-~~~~l~~L~~L~ 541 (557)
++ .++.++. .+.++++|+.+.
T Consensus 306 ~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SS-CCCEECTTTTCTTCCCCEEE
T ss_pred CC-ccCccchhhhcCCcchhhhc
Confidence 87 5777776 566777887765
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=2.1e-10 Score=100.33 Aligned_cols=105 Identities=22% Similarity=0.330 Sum_probs=68.3
Q ss_pred eEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcccCCCeeecccCCcccccchh-hhcc
Q 039861 205 RSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKLLHLKYLNLKSQNKIEKLPET-LCEL 282 (557)
Q Consensus 205 ~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l 282 (557)
+.++++++.+. . +|..+ .++|++|+| ++|.+..+ |..++++.+|++|+|++|. +..+|.. +.++
T Consensus 15 ~~l~~~~n~l~---~-iP~~~--~~~L~~L~L-------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLA---S-VPAGI--PTDKQRLWL-------NNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCS---S-CCSCC--CTTCSEEEC-------CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred cEEEeCCCCCC---c-cCCCc--CCCCcEEEe-------CCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCc
Confidence 56666666532 2 33322 267777777 77777766 4567777777777777776 7777644 4677
Q ss_pred CcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCcccc
Q 039861 283 HNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYLPV 325 (557)
Q Consensus 283 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~ 325 (557)
++|++|++++|. +..+|.. +..+++|++|++++| .+...+.
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 777777777765 6666654 677777777777777 3444443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=3.2e-10 Score=99.13 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=67.3
Q ss_pred eEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCccc-ccCCCCC
Q 039861 232 RALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELPRG-IGKLRKL 309 (557)
Q Consensus 232 ~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L 309 (557)
+.+++ +++.+..+|..+. .+|++|+|++|. +..+ |..+.++++|++|++++|. +..+|.. +.++++|
T Consensus 15 ~~l~~-------~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNC-------QNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEEC-------CSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cEEEe-------CCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchh
Confidence 45666 6666777776553 677777777776 6655 4566777777777777765 6666654 3677777
Q ss_pred cEeecCCCCCCCccccc-ccCcccccccCceEecCc
Q 039861 310 MYIDNDDTDSLRYLPVG-IGELIRLRRVTKLVVGGG 344 (557)
Q Consensus 310 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 344 (557)
++|++++| .+..+|.. ++.+++|+.|++.++...
T Consensus 84 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 84 TQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hEEECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777776 45556554 666777777776665543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=3e-10 Score=98.89 Aligned_cols=99 Identities=24% Similarity=0.384 Sum_probs=55.8
Q ss_pred ceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCccccc-chhhhcccCCCeeecccCCcccccchh-hhc
Q 039861 204 LRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEI-PTNIEKLLHLKYLNLKSQNKIEKLPET-LCE 281 (557)
Q Consensus 204 L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~ 281 (557)
.++++++++.+. . +|..+ .+.|++|+| ++|.+..+ |..++.+.+|++|+|++|. +..+|.. +..
T Consensus 11 ~~~l~~s~n~l~---~-ip~~~--~~~l~~L~L-------~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLA---S-VPTGI--PTTTQVLYL-------YDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCS---S-CCSCC--CTTCSEEEC-------CSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEeCCCCcC---c-cCccC--CCCCcEEEc-------CCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccC
Confidence 345566665532 1 23222 255666666 66666655 3446666666666666665 5555533 456
Q ss_pred cCcCcEeecCCccccccCccc-ccCCCCCcEeecCCC
Q 039861 282 LHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDT 317 (557)
Q Consensus 282 l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 317 (557)
+++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 6666666666654 5555543 566666666666665
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=6.2e-10 Score=97.75 Aligned_cols=124 Identities=24% Similarity=0.383 Sum_probs=93.7
Q ss_pred ceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccch-hhhcccCCCeeecccCCcccccch-hhhc
Q 039861 204 LRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPT-NIEKLLHLKYLNLKSQNKIEKLPE-TLCE 281 (557)
Q Consensus 204 L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~~~~ 281 (557)
.+.+.+.++.+. . +|. .-.++|++|++ +++.+..+|. .++.+.+|++|++++|. +..+|. .+..
T Consensus 9 ~~~l~~~~~~l~---~-~p~--~~~~~l~~L~l-------~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT---S-VPT--GIPSSATRLEL-------ESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCCS---S-CCT--TCCTTCSEEEC-------CSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCCCc---c-CCC--CCCCCCcEEEe-------CCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 356666666532 2 332 22468999999 8888888875 46889999999999998 888874 4689
Q ss_pred cCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCCCCCccccc-ccCcccccccCceEecC
Q 039861 282 LHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTDSLRYLPVG-IGELIRLRRVTKLVVGG 343 (557)
Q Consensus 282 l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~ 343 (557)
+++|++|++++|. +..+|.. ++.+++|++|++++| .++.+|.. +..+++|++|++..+..
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 9999999999977 6677654 688999999999998 56677765 46778888877766543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=1.3e-09 Score=94.79 Aligned_cols=102 Identities=28% Similarity=0.411 Sum_probs=77.9
Q ss_pred eeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCccccc-chhhhccCcCcEeecCCccccccCccc-ccCCCC
Q 039861 231 LRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNKIEKL-PETLCELHNLERLNVDDCENLRELPRG-IGKLRK 308 (557)
Q Consensus 231 L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~ 308 (557)
.+.+++ +++.++.+|..+. .+|++|+|++|. +..+ |..+..+++|++|++++|. +..+|.. +..+++
T Consensus 11 ~~~l~~-------s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDC-------SGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEEC-------TTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEe-------CCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 467788 7788888887663 788888888888 7776 5668888888888888876 6677665 478888
Q ss_pred CcEeecCCCCCCCccccc-ccCcccccccCceEecCc
Q 039861 309 LMYIDNDDTDSLRYLPVG-IGELIRLRRVTKLVVGGG 344 (557)
Q Consensus 309 L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~ 344 (557)
|++|++++| .++.+|.. ++.+++|+.|++.++...
T Consensus 80 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 80 LTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888888888 55666654 778888888888777654
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=1.4e-07 Score=93.77 Aligned_cols=243 Identities=12% Similarity=0.119 Sum_probs=128.6
Q ss_pred HHhcCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcc
Q 039861 224 LFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR 301 (557)
Q Consensus 224 ~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~ 301 (557)
+|.+. +|+.+.+ ..+ ++.++ .+|.+ .+|+.+.+.. . +..++ ..|.++.+|+.+++.+|. +..+|.
T Consensus 131 aF~~~-~L~~i~l-------~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~ 197 (401)
T 4fdw_A 131 AFRNS-QIAKVVL-------NEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPA 197 (401)
T ss_dssp TTTTC-CCSEEEC-------CTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECT
T ss_pred hcccC-CccEEEe-------CCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEech
Confidence 34443 4555555 322 44444 23444 2466666554 2 45554 345556666666665543 555554
Q ss_pred cccCCCCCcEeecCCCCCCCcccc-cccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHh
Q 039861 302 GIGKLRKLMYIDNDDTDSLRYLPV-GIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRA 380 (557)
Q Consensus 302 ~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~ 380 (557)
..-...+|+.+.+..+ ++.++. .+..+.+|+.+.+..+ ........+.. ..|+.+.+.. .+..
T Consensus 198 ~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~----~~L~~i~lp~--~i~~------- 261 (401)
T 4fdw_A 198 STFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE----SGITTVKLPN--GVTN------- 261 (401)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT----CCCSEEEEET--TCCE-------
T ss_pred hhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc----CCccEEEeCC--CccE-------
Confidence 4333456666665532 333332 2444555555443211 00001111211 2233333321 1110
Q ss_pred hccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCC--CCCCCCCcCeeeeccccCc
Q 039861 381 ELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLP--PLGKLPSLEYLEIEGMQSV 458 (557)
Q Consensus 381 ~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l 458 (557)
.....+..+++|+.+.+.++..... ....++ .+.++++|+.+.+.+ ++
T Consensus 262 ------------I~~~aF~~c~~L~~l~l~~~~~~~~----------------~~~~I~~~aF~~c~~L~~l~l~~--~i 311 (401)
T 4fdw_A 262 ------------IASRAFYYCPELAEVTTYGSTFNDD----------------PEAMIHPYCLEGCPKLARFEIPE--SI 311 (401)
T ss_dssp ------------ECTTTTTTCTTCCEEEEESSCCCCC----------------TTCEECTTTTTTCTTCCEECCCT--TC
T ss_pred ------------EChhHhhCCCCCCEEEeCCccccCC----------------cccEECHHHhhCCccCCeEEeCC--ce
Confidence 0123556778899999887654310 011122 267888999999874 47
Q ss_pred eEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCC-CcCCC-CC
Q 039861 459 KRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD-HLLQK-ST 536 (557)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l-~~ 536 (557)
+.++...+ .++++|+.+.+.. .++.+.. ..+..+ +|+.+.+.+|. +..++. .+..+ .+
T Consensus 312 ~~I~~~aF-----------~~c~~L~~l~lp~--~l~~I~~-----~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 312 RILGQGLL-----------GGNRKVTQLTIPA--NVTQINF-----SAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDD 371 (401)
T ss_dssp CEECTTTT-----------TTCCSCCEEEECT--TCCEECT-----TSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTT
T ss_pred EEEhhhhh-----------cCCCCccEEEECc--cccEEcH-----HhCCCC-CCCEEEEcCCC-CcccccccccCCCCC
Confidence 77765433 3577899999854 3555543 567778 99999999984 555554 34444 47
Q ss_pred cceEEEecC
Q 039861 537 LQKLEIWGC 545 (557)
Q Consensus 537 L~~L~l~~c 545 (557)
++.|.+-.+
T Consensus 372 l~~l~vp~~ 380 (401)
T 4fdw_A 372 ITVIRVPAE 380 (401)
T ss_dssp CCEEEECGG
T ss_pred ccEEEeCHH
Confidence 788888654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=9.7e-09 Score=100.74 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=69.3
Q ss_pred EEeccC-CccchhhhhHHHHhcCCceeEEEeccccCCCCc-Ccccccc-hhhhcccCCCeeecccCCcccccc-hhhhcc
Q 039861 207 FLVKSD-EYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSV-NDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP-ETLCEL 282 (557)
Q Consensus 207 L~l~~~-~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~-~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l 282 (557)
++..++ . +.. +|. +..+++|++|+| ++ |.+..+| ..|+.|.+|++|+|++|. +..+| ..|.+|
T Consensus 13 v~~~~~n~---l~~-ip~-l~~~~~L~~L~l-------~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l 79 (347)
T 2ifg_A 13 LRCTRDGA---LDS-LHH-LPGAENLTELYI-------ENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT 79 (347)
T ss_dssp EECCSSCC---CTT-TTT-SCSCSCCSEEEC-------CSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSC
T ss_pred EEcCCCCC---CCc-cCC-CCCCCCeeEEEc-------cCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCC
Confidence 455555 4 333 566 777888888888 75 7787776 467888888888888887 66665 467888
Q ss_pred CcCcEeecCCccccccCcccccCCCCCcEeecCCC
Q 039861 283 HNLERLNVDDCENLRELPRGIGKLRKLMYIDNDDT 317 (557)
Q Consensus 283 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 317 (557)
++|++|+|++|. +..+|..+....+|++|++.+|
T Consensus 80 ~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 80 PRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred cCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCC
Confidence 888888888866 6677765544334888888877
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=2.7e-08 Score=96.72 Aligned_cols=277 Identities=13% Similarity=0.085 Sum_probs=142.5
Q ss_pred CceEEEEEEecCCCCcccccccccCC-CCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc-
Q 039861 175 KKIRHLMLIVRGRASVPISIWDNVKG-LRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP- 252 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp- 252 (557)
..+++|.+.+.-. ..-+..+.. +++|++|++++|.+..... .+ +.+..++.+.+ ..+ .+|
T Consensus 25 ~~l~~L~l~g~i~----~~~~~~l~~~l~~L~~LdLs~n~i~~~~~-~~---~~~~~~~~~~~-------~~~---~I~~ 86 (329)
T 3sb4_A 25 NSITHLTLTGKLN----AEDFRHLRDEFPSLKVLDISNAEIKMYSG-KA---GTYPNGKFYIY-------MAN---FVPA 86 (329)
T ss_dssp HHCSEEEEEEEEC----HHHHHHHHHSCTTCCEEEEEEEEECCEEE-SS---SSSGGGCCEEE-------CTT---EECT
T ss_pred CceeEEEEecccc----HHHHHHHHHhhccCeEEecCcceeEEecC-cc---ccccccccccc-------ccc---ccCH
Confidence 4577777765321 111122222 7789999999987541111 11 11222455555 333 344
Q ss_pred hhhhc--------ccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCC---C
Q 039861 253 TNIEK--------LLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTD---S 319 (557)
Q Consensus 253 ~~~~~--------l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~---~ 319 (557)
..|.+ +.+|+.|++.+ . +..++ ..|..+++|+.+++.+|. +..++ ..+..+.++..+...... .
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhc
Confidence 34566 88999999987 4 78886 468888999999998866 44444 346666677766655421 0
Q ss_pred CCcc-cccccCcccccc-cCceEecCccCCc-cCccccccCCcCCCceecCCCCCCChhHHHHhhccCCCCCchHHhhhh
Q 039861 320 LRYL-PVGIGELIRLRR-VTKLVVGGGYDRA-CSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELEKKKNLDEDERLLE 396 (557)
Q Consensus 320 l~~~-p~~i~~L~~L~~-L~~~~~~~~~~~~-~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~ 396 (557)
...+ +..+..+.+|+. +.+ ....... ..+..--...++..+.+.+. +...... .+
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~---------------~l-- 221 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQV---GAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFK---------------LI-- 221 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEE---CTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHH---------------HH--
T ss_pred cccccccccccccccceeEEe---cCCCcHHHHHhhcccCccccceEEEeee--ecHHHHH---------------HH--
Confidence 0111 111223333331 100 0000000 00000001122222323221 1000000 00
Q ss_pred cCCCCCCccEEEEeecCCcCCCCCcccc------cCccccCccccCCCCC--CCCCCCcC-eeeeccccCceEecccccC
Q 039861 397 ALGPPPNLKKLQIYDYRGRRNVVPKNWI------MDLSLFRCRNCEHLPP--LGKLPSLE-YLEIEGMQSVKRVGNEFLG 467 (557)
Q Consensus 397 ~l~~~~~L~~L~l~~~~~~~~~~~~~~l------~~L~l~~~~~~~~l~~--l~~l~~L~-~L~l~~~~~l~~~~~~~~~ 467 (557)
...+++|+.+++.+|.... ++...| +.+.+.++ +..++. +.++++|+ .+.+.+ .++.++...+
T Consensus 222 -~~~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF- 293 (329)
T 3sb4_A 222 -RDYMPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF- 293 (329)
T ss_dssp -HHHCTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-
T ss_pred -HHhcCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-
Confidence 0114566666666655444 333322 22333332 444443 78899999 999987 6777765432
Q ss_pred CCCCCCCcccccccccccccccccccccccccccccccccccCCccceeee
Q 039861 468 VESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSI 518 (557)
Q Consensus 468 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 518 (557)
.++++|+.+++.. +.++.+.. ..+..+++|+.|..
T Consensus 294 ----------~~c~~L~~l~l~~-n~i~~I~~-----~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 ----------MGCDNLRYVLATG-DKITTLGD-----ELFGNGVPSKLIYK 328 (329)
T ss_dssp ----------TTCTTEEEEEECS-SCCCEECT-----TTTCTTCCCCEEEC
T ss_pred ----------hCCccCCEEEeCC-CccCccch-----hhhcCCcchhhhcc
Confidence 3678999999976 45666653 57788889988753
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=6.2e-08 Score=94.94 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=39.4
Q ss_pred cccccchhhhcccCCCeeeccc-CCcccccc-hhhhccCcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCCcc
Q 039861 247 DIKEIPTNIEKLLHLKYLNLKS-QNKIEKLP-ETLCELHNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLRYL 323 (557)
Q Consensus 247 ~l~~lp~~~~~l~~L~~L~L~~-~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~ 323 (557)
.+..+|. ++.+.+|++|+|++ |. +..+| ..|+.|++|++|+|++|. +..+| ..+++|++|++|+|++| .+..+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-cccee
Confidence 4444444 44444455555543 33 44443 334444555555555443 33322 23344455555555444 33344
Q ss_pred cccccCcccccccCceEe
Q 039861 324 PVGIGELIRLRRVTKLVV 341 (557)
Q Consensus 324 p~~i~~L~~L~~L~~~~~ 341 (557)
|..+.....|+.|++.++
T Consensus 96 ~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSTTTCSCCCCEEECCSS
T ss_pred CHHHcccCCceEEEeeCC
Confidence 433222222444444433
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=2.4e-06 Score=84.95 Aligned_cols=236 Identities=15% Similarity=0.162 Sum_probs=149.1
Q ss_pred cCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcc-cc
Q 039861 227 KLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR-GI 303 (557)
Q Consensus 227 ~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i 303 (557)
.+..++.+.+ . +.++.++ .+|.+. +|+.+.+..+ +..++ ..|.+ .+|+.+.+.. .+..++. .+
T Consensus 111 ~~~~l~~i~i-------p-~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF 176 (401)
T 4fdw_A 111 ILKGYNEIIL-------P-NSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIF 176 (401)
T ss_dssp ECSSCSEEEC-------C-TTCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTT
T ss_pred ecCCccEEEE-------C-CccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHh
Confidence 3466777777 3 3466666 456664 7999999765 78887 45656 5799999986 4777764 57
Q ss_pred cCCCCCcEeecCCCCCCCcccccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHHHhhcc
Q 039861 304 GKLRKLMYIDNDDTDSLRYLPVGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEARRAELE 383 (557)
Q Consensus 304 ~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~ 383 (557)
..+++|+.+++..| .++.+|.......+|+.+.+... ........ +..+.+|+.+.+.. .+....
T Consensus 177 ~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~a---F~~~~~L~~l~l~~--~l~~I~-------- 241 (401)
T 4fdw_A 177 YYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQA---FLKTSQLKTIEIPE--NVSTIG-------- 241 (401)
T ss_dssp TTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTT---TTTCTTCCCEECCT--TCCEEC--------
T ss_pred hCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhH---hhCCCCCCEEecCC--CccCcc--------
Confidence 89999999999987 67778776555677776655311 11111122 22333444444432 111100
Q ss_pred CCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCC--CCCCCCCcCeeeeccccC----
Q 039861 384 KKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLP--PLGKLPSLEYLEIEGMQS---- 457 (557)
Q Consensus 384 ~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~---- 457 (557)
...+.. .+|+.+.+.++ +..++ .+..+++|+.+.+.+...
T Consensus 242 -----------~~aF~~-~~L~~i~lp~~----------------------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 242 -----------QEAFRE-SGITTVKLPNG----------------------VTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp -----------TTTTTT-CCCSEEEEETT----------------------CCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred -----------cccccc-CCccEEEeCCC----------------------ccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 112222 46777776321 12222 367889999999876321
Q ss_pred ceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCC-CcCCCCC
Q 039861 458 VKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPD-HLLQKST 536 (557)
Q Consensus 458 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~ 536 (557)
.+.++... +.++++|+.+.+.+ .++.+.. ..+..+++|+.+.+..+ ++.++. .+.++ +
T Consensus 288 ~~~I~~~a-----------F~~c~~L~~l~l~~--~i~~I~~-----~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 288 EAMIHPYC-----------LEGCPKLARFEIPE--SIRILGQ-----GLLGGNRKVTQLTIPAN--VTQINFSAFNNT-G 346 (401)
T ss_dssp TCEECTTT-----------TTTCTTCCEECCCT--TCCEECT-----TTTTTCCSCCEEEECTT--CCEECTTSSSSS-C
T ss_pred ccEECHHH-----------hhCCccCCeEEeCC--ceEEEhh-----hhhcCCCCccEEEECcc--ccEEcHHhCCCC-C
Confidence 12333322 34678999999974 4666654 57788999999999765 777765 56677 9
Q ss_pred cceEEEecCC
Q 039861 537 LQKLEIWGCP 546 (557)
Q Consensus 537 L~~L~l~~c~ 546 (557)
|+.+++.+|.
T Consensus 347 L~~l~l~~n~ 356 (401)
T 4fdw_A 347 IKEVKVEGTT 356 (401)
T ss_dssp CCEEEECCSS
T ss_pred CCEEEEcCCC
Confidence 9999999874
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=2.3e-08 Score=98.57 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=94.0
Q ss_pred CceEEEEEEecCCCCcccc-cccccC-CCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccc
Q 039861 175 KKIRHLMLIVRGRASVPIS-IWDNVK-GLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIP 252 (557)
Q Consensus 175 ~~~r~l~l~~~~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp 252 (557)
..++.+.+..+........ +...+. ..+.|+.|++++|.+.. .........+++|+.|+| ++|.+....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~L-------s~n~l~~~~ 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRARKLGL-------QLNSLGPEA 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEEC-------CSSCCCHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--HHHHHHHHHHHhccHhhc-------CCCCCCHHH
Confidence 3455666655554422111 111111 23678888888887422 112222344567888888 666665322
Q ss_pred -----hhh-hcccCCCeeecccCCcccc-----cchhhhccCcCcEeecCCcccccc-----CcccccCCCCCcEeecCC
Q 039861 253 -----TNI-EKLLHLKYLNLKSQNKIEK-----LPETLCELHNLERLNVDDCENLRE-----LPRGIGKLRKLMYIDNDD 316 (557)
Q Consensus 253 -----~~~-~~l~~L~~L~L~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~ 316 (557)
..+ ....+|++|+|++|. +.. ++..+...++|++|++++|. +.. ++..+...++|++|++++
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 222 235678888888887 643 45556778888888888876 432 345566777888888888
Q ss_pred CCCCCc-----ccccccCcccccccCceEecCcc
Q 039861 317 TDSLRY-----LPVGIGELIRLRRVTKLVVGGGY 345 (557)
Q Consensus 317 ~~~l~~-----~p~~i~~L~~L~~L~~~~~~~~~ 345 (557)
|. ++. ++..+...++|++|++.+|....
T Consensus 221 N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 221 NG-AGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 83 332 23334455777777777666543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=6.3e-08 Score=95.40 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=108.6
Q ss_pred CCcceEEEeccCCccchh-hhhHHHHh-cCCceeEEEeccccCCCCcCcccc--cchhhhcccCCCeeecccCCcccccc
Q 039861 201 LRGLRSFLVKSDEYSWSS-EVLPQLFD-KLTCLRALNLKVRKPWSSVNDIKE--IPTNIEKLLHLKYLNLKSQNKIEKLP 276 (557)
Q Consensus 201 l~~L~~L~l~~~~~~~~~-~~~p~~~~-~l~~L~~L~L~~~~~~~~~~~l~~--lp~~~~~l~~L~~L~L~~~~~l~~lp 276 (557)
.+.|+.|++++|.+.... ..+...+. ..++|++|+| ++|.+.. +..-...+.+|++|+|++|. +....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L-------s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL-------ASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC-------TTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe-------cCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence 567999999999853211 12233333 2379999999 7777753 22323457789999999998 76432
Q ss_pred -hhh-----hccCcCcEeecCCcccccc-----CcccccCCCCCcEeecCCCCCCCc-----ccccccCcccccccCceE
Q 039861 277 -ETL-----CELHNLERLNVDDCENLRE-----LPRGIGKLRKLMYIDNDDTDSLRY-----LPVGIGELIRLRRVTKLV 340 (557)
Q Consensus 277 -~~~-----~~l~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----~p~~i~~L~~L~~L~~~~ 340 (557)
..+ ...++|++|++++|. +.. ++..+..+++|++|++++|. ++. ++..+...++|++|++.+
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 223 246889999999987 433 55556789999999999994 432 345567778999999988
Q ss_pred ecCccCCccC-ccccccCCcCCCceecCCC
Q 039861 341 VGGGYDRACS-LGSLKKLNLLRECTIRGLG 369 (557)
Q Consensus 341 ~~~~~~~~~~-l~~L~~L~~L~~l~i~~~~ 369 (557)
|......... ...+...+.|+.|++++..
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 7765422222 2345566778888887653
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=6.1e-06 Score=82.14 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=57.2
Q ss_pred CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeecc
Q 039861 441 LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQS 520 (557)
Q Consensus 441 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 520 (557)
+..+.+|+.+.+.+ +++.++... ..++.+|+.+.+.+ .++.+.. ..+..+.+|+.+.+..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~a-----------F~~c~~L~~i~lp~--~v~~I~~-----~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEA-----------FESCTSLVSIDLPY--LVEEIGK-----RSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTT-----------TTTCTTCCEECCCT--TCCEECT-----TTTTTCTTCCEECCCT
T ss_pred cccccccccccccc--ccceechhh-----------hcCCCCCCEEEeCC--cccEEhH-----HhccCCCCCCEEEECc
Confidence 55677888887754 366665432 23567888888854 3555543 5677888999999876
Q ss_pred CccccCCCC-CcCCCCCcceEEEecC
Q 039861 521 CPKLKALPD-HLLQKSTLQKLEIWGC 545 (557)
Q Consensus 521 c~~l~~lp~-~~~~l~~L~~L~l~~c 545 (557)
+ ++.++. .+.++++|+.+++..+
T Consensus 353 ~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 353 S--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c--ccEehHHHhhCCCCCCEEEECCC
Confidence 5 677765 5667889999998654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=2.3e-06 Score=79.18 Aligned_cols=79 Identities=25% Similarity=0.332 Sum_probs=43.8
Q ss_pred hcCCceeEEEeccccCCCCcCccccc---chhhhcccCCCeeecccCCcccccchhhhccC--cCcEeecCCccccccCc
Q 039861 226 DKLTCLRALNLKVRKPWSSVNDIKEI---PTNIEKLLHLKYLNLKSQNKIEKLPETLCELH--NLERLNVDDCENLRELP 300 (557)
Q Consensus 226 ~~l~~L~~L~L~~~~~~~~~~~l~~l---p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~lp 300 (557)
.++++|+.|+| ++|.+..+ |..++.+++|++|+|++|. +..+. .+..+. +|++|++++|.....+|
T Consensus 167 ~~l~~L~~L~L-------s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNL-------SNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEEC-------TTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEEC-------CCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 45666666666 55555543 2445566666666666666 55552 244444 66666666665333333
Q ss_pred c-------cccCCCCCcEee
Q 039861 301 R-------GIGKLRKLMYID 313 (557)
Q Consensus 301 ~-------~i~~L~~L~~L~ 313 (557)
. .+..+++|+.||
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 1 234556666554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=4.8e-07 Score=77.54 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccC----Cccceeeecc
Q 039861 445 PSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIM----PRLSSLSIQS 520 (557)
Q Consensus 445 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l----~~L~~L~l~~ 520 (557)
.+|+.|++++|. ++..+ +.. +.++++|+.|+|++|..+++... ..+..+ ++|++|+|++
T Consensus 61 ~~L~~LDLs~~~-Itd~G--L~~---------L~~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG--FDH---------MEGLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp CCEEEEEEESCC-CCGGG--GGG---------GTTCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEES
T ss_pred ceEeEEeCcCCC-ccHHH--HHH---------hcCCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCC
Confidence 368888888875 32211 111 34688888888888887665432 223332 4788888888
Q ss_pred CccccC--CCCCcCCCCCcceEEEecCCCccc
Q 039861 521 CPKLKA--LPDHLLQKSTLQKLEIWGCPILKE 550 (557)
Q Consensus 521 c~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~ 550 (557)
|+.++. +. .+.++++|++|++++|+.+++
T Consensus 124 C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 124 CGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 887663 21 123478888888888887765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=2e-06 Score=84.02 Aligned_cols=16 Identities=13% Similarity=-0.103 Sum_probs=10.7
Q ss_pred CCCCCccEEEEeecCC
Q 039861 399 GPPPNLKKLQIYDYRG 414 (557)
Q Consensus 399 ~~~~~L~~L~l~~~~~ 414 (557)
..+++|+.|++++|.+
T Consensus 304 ~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHTTCSEEECCSBBC
T ss_pred ccCCcceEEECCCCcC
Confidence 3456788888876653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=9.2e-06 Score=71.29 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=77.1
Q ss_pred ccccCCCCcceEEEeccC-Cccc-hhhhhHHHHhcCCceeEEEeccccCCCCcCcccc-----cchhhhcccCCCeeecc
Q 039861 195 WDNVKGLRGLRSFLVKSD-EYSW-SSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE-----IPTNIEKLLHLKYLNLK 267 (557)
Q Consensus 195 ~~~~~~l~~L~~L~l~~~-~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~-----lp~~~~~l~~L~~L~L~ 267 (557)
...+...+.|++|++++| .+.. ....+...+...+.|++|+| ++|.+.. +...+....+|++|+|+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L-------s~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI-------VGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC-------TTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC-------cCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 344555788888888887 6432 11234555677788888888 6666543 44556667788888888
Q ss_pred cCCcccc-----cchhhhccCcCcEeec--CCcccccc-----CcccccCCCCCcEeecCCC
Q 039861 268 SQNKIEK-----LPETLCELHNLERLNV--DDCENLRE-----LPRGIGKLRKLMYIDNDDT 317 (557)
Q Consensus 268 ~~~~l~~-----lp~~~~~l~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 317 (557)
+|. +.. +...+...+.|++|++ ++|. +.. +...+...++|++|++++|
T Consensus 102 ~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 102 SNF-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 887 664 4556677778888888 6665 332 3344556678888888877
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=7.2e-06 Score=70.19 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=34.7
Q ss_pred hhcccCCCeeecccCCcccccc-hhhhcc----CcCcEeecCCccccccCc-ccccCCCCCcEeecCCCCCCC
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLP-ETLCEL----HNLERLNVDDCENLRELP-RGIGKLRKLMYIDNDDTDSLR 321 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp-~~~~~l----~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~ 321 (557)
+..+++|+.|+|++|..++.-- ..++.+ ++|++|++++|..++.-- ..+.++++|++|++++|..++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 4455666666666665444321 223332 256666666665554311 234556666666666664443
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=2.5e-06 Score=83.23 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=97.8
Q ss_pred cCCCCcceEEEeccCCc-----cchh-hhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhcccCCCeeecccCCc
Q 039861 198 VKGLRGLRSFLVKSDEY-----SWSS-EVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLLHLKYLNLKSQNK 271 (557)
Q Consensus 198 ~~~l~~L~~L~l~~~~~-----~~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 271 (557)
...+++|+.|.+..... ++.. ..++..+..+++|+.|+| .++.-..+|. + .+.+|+.|++..|.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L-------~g~~~l~l~~-~-~~~~L~~L~L~~~~- 204 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI-------KGTNNLSIGK-K-PRPNLKSLEIISGG- 204 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEE-------ECCBTCBCCS-C-BCTTCSEEEEECSB-
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEE-------eCCCCceecc-c-cCCCCcEEEEecCC-
Confidence 34478899998865421 1111 235667788999999999 4442123444 3 37899999998776
Q ss_pred ccc-cchhhh--ccCcCcEeecCCccc-------cccCcccc--cCCCCCcEeecCCCCCCCcccccc---cCccccccc
Q 039861 272 IEK-LPETLC--ELHNLERLNVDDCEN-------LRELPRGI--GKLRKLMYIDNDDTDSLRYLPVGI---GELIRLRRV 336 (557)
Q Consensus 272 l~~-lp~~~~--~l~~L~~L~l~~~~~-------l~~lp~~i--~~L~~L~~L~l~~~~~l~~~p~~i---~~L~~L~~L 336 (557)
+.. ....+. .+++|++|+|+.+.+ +..+...+ ..+++|++|++.+|......+..+ +.+++|++|
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L 284 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence 432 123344 789999999863211 22222223 357899999998884332222222 357889999
Q ss_pred CceEecCccCCccC-ccccccCCcCCCceecCC
Q 039861 337 TKLVVGGGYDRACS-LGSLKKLNLLRECTIRGL 368 (557)
Q Consensus 337 ~~~~~~~~~~~~~~-l~~L~~L~~L~~l~i~~~ 368 (557)
++..+...+..... ...++++++|+.|++..+
T Consensus 285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred ECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 88766544321111 234466777888888654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.86 E-value=5.4e-06 Score=72.81 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=70.4
Q ss_pred hhhhHHHHhcCCceeEEEeccccCCCCcC-ccc-----ccchhhhcccCCCeeecccCCcccc-----cchhhhccCcCc
Q 039861 218 SEVLPQLFDKLTCLRALNLKVRKPWSSVN-DIK-----EIPTNIEKLLHLKYLNLKSQNKIEK-----LPETLCELHNLE 286 (557)
Q Consensus 218 ~~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~~~~l~~L~ 286 (557)
...+...+...+.|+.|+| +++ .+. .+...+....+|++|+|++|. +.. +...+...++|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L-------~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNL-------NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLK 96 (185)
T ss_dssp HHHHHHHHTTCTTCCEEEC-------TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHhcCCCCCEEEe-------cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcC
Confidence 3446667888999999999 666 554 355667778899999999998 653 455566778999
Q ss_pred EeecCCcccccc-----CcccccCCCCCcEeec--CCC
Q 039861 287 RLNVDDCENLRE-----LPRGIGKLRKLMYIDN--DDT 317 (557)
Q Consensus 287 ~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l--~~~ 317 (557)
+|++++|. +.. +...+...++|++|++ ++|
T Consensus 97 ~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 97 SLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp EEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred EEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 99999987 443 4566777889999999 667
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.85 E-value=8.8e-05 Score=73.71 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=129.6
Q ss_pred HHHHhcCCceeEEEeccccCCCCcCcccccc-hhhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccC
Q 039861 222 PQLFDKLTCLRALNLKVRKPWSSVNDIKEIP-TNIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLREL 299 (557)
Q Consensus 222 p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l 299 (557)
..+|.++++|+.+.+ ..+ +..++ ..+.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+ ...+
T Consensus 155 ~~aF~~c~~L~~i~l-------~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i 222 (394)
T 4fs7_A 155 DEAFATCESLEYVSL-------PDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYL 222 (394)
T ss_dssp TTTTTTCTTCCEEEC-------CTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEE
T ss_pred hhhhcccCCCcEEec-------CCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEe
Confidence 345788888998888 433 34454 45778888888888655 56665 46778888888877653 2333
Q ss_pred cccccCCCCCcEeecCCCCCCCccc-ccccCcccccccCceEecCccCCccCccccccCCcCCCceecCCCCCCChhHHH
Q 039861 300 PRGIGKLRKLMYIDNDDTDSLRYLP-VGIGELIRLRRVTKLVVGGGYDRACSLGSLKKLNLLRECTIRGLGGVSDAGEAR 378 (557)
Q Consensus 300 p~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~ 378 (557)
........+|+.+.+... ...+. ..+.....|+.+.+..... ......+. ....+........ .+
T Consensus 223 ~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~---~~~~l~~~~~~~~-~i------- 288 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFY---NCSGLKKVIYGSV-IV------- 288 (394)
T ss_dssp CTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTT---TCTTCCEEEECSS-EE-------
T ss_pred ehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcc-eeeccccc---cccccceeccCce-ee-------
Confidence 333444567777777543 22332 2344455555443321110 00011111 1111222111110 00
Q ss_pred HhhccCCCCCchHHhhhhcCCCCCCccEEEEeecCCcCCCCCcccccCccccCccccCCCC--CCCCCCCcCeeeecccc
Q 039861 379 RAELEKKKNLDEDERLLEALGPPPNLKKLQIYDYRGRRNVVPKNWIMDLSLFRCRNCEHLP--PLGKLPSLEYLEIEGMQ 456 (557)
Q Consensus 379 ~~~l~~l~~l~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~ 456 (557)
.-..+....+|+.+.+.++ ++.++ .+..+.+|+.++|.+
T Consensus 289 ---------------~~~~F~~~~~L~~i~l~~~----------------------i~~I~~~aF~~c~~L~~i~lp~-- 329 (394)
T 4fs7_A 289 ---------------PEKTFYGCSSLTEVKLLDS----------------------VKFIGEEAFESCTSLVSIDLPY-- 329 (394)
T ss_dssp ---------------CTTTTTTCTTCCEEEECTT----------------------CCEECTTTTTTCTTCCEECCCT--
T ss_pred ---------------ccccccccccccccccccc----------------------cceechhhhcCCCCCCEEEeCC--
Confidence 0012344567777766432 11122 256778888888853
Q ss_pred CceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeeccCccccCCCCCcCCCCC
Q 039861 457 SVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQSCPKLKALPDHLLQKST 536 (557)
Q Consensus 457 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 536 (557)
.++.++... +.++.+|+.+.+.. .++.+.. ..+..+++|+.+++..+ ++.+...+.++++
T Consensus 330 ~v~~I~~~a-----------F~~c~~L~~i~lp~--~l~~I~~-----~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~ 389 (394)
T 4fs7_A 330 LVEEIGKRS-----------FRGCTSLSNINFPL--SLRKIGA-----NAFQGCINLKKVELPKR--LEQYRYDFEDTTK 389 (394)
T ss_dssp TCCEECTTT-----------TTTCTTCCEECCCT--TCCEECT-----TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCE
T ss_pred cccEEhHHh-----------ccCCCCCCEEEECc--cccEehH-----HHhhCCCCCCEEEECCC--CEEhhheecCCCC
Confidence 466665433 23567888888864 3555543 56788899999999764 5555555666666
Q ss_pred cceE
Q 039861 537 LQKL 540 (557)
Q Consensus 537 L~~L 540 (557)
|+.+
T Consensus 390 L~~I 393 (394)
T 4fs7_A 390 FKWI 393 (394)
T ss_dssp EEEE
T ss_pred CcEE
Confidence 6654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.76 E-value=0.00057 Score=67.76 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=49.9
Q ss_pred cCCCC-cceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcC---cccccc-hhhhcccCCCeeecccCCcc
Q 039861 198 VKGLR-GLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVN---DIKEIP-TNIEKLLHLKYLNLKSQNKI 272 (557)
Q Consensus 198 ~~~l~-~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~---~l~~lp-~~~~~l~~L~~L~L~~~~~l 272 (557)
|.+++ .|++..+..+ +..+-..+|.++.+|+.+.+ ..+ .++.++ .+|..+.+|+.+.+..+ +
T Consensus 59 F~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~-------~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~ 125 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTI-------QDNKPSCVKKIGRQAFMFCSELTDIPILDS--V 125 (394)
T ss_dssp TTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEE-------GGGCCCCCCEECTTTTTTCTTCCBCGGGTT--C
T ss_pred ccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEee-------cCCCCCeeeEechhhchhcccceeeccCCc--c
Confidence 33343 3666655443 22223344666666666666 322 244443 34555556665555433 4
Q ss_pred cccc-hhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecCC
Q 039861 273 EKLP-ETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDNDD 316 (557)
Q Consensus 273 ~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~ 316 (557)
..++ ..+..+.+|+.+.+.. .+..++. .+....+|+.+.+..
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred ceehhhhhhhhcccccccccc--eeeeecccceecccccccccccc
Confidence 4444 3445556666666543 1333332 234555555555543
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.63 E-value=7.5e-05 Score=68.97 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=65.5
Q ss_pred CCCcceEEEeccCCccchhhhhHHHHhcCCceeEEEeccccCCCCcCcccccchhhhccc--CCCeeecccCCcccccc-
Q 039861 200 GLRGLRSFLVKSDEYSWSSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKEIPTNIEKLL--HLKYLNLKSQNKIEKLP- 276 (557)
Q Consensus 200 ~l~~L~~L~l~~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~lp~~~~~l~--~L~~L~L~~~~~l~~lp- 276 (557)
+++.|++|++++|.+..+.. +|..+..+++|++|+| ++|.+..+ ..+..+. +|++|+|++|..-..+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~L-------s~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNL-------SGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEEC-------TTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEEC-------CCCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence 48899999999999765444 5677889999999999 88888877 3456666 99999999999333455
Q ss_pred ------hhhhccCcCcEeecC
Q 039861 277 ------ETLCELHNLERLNVD 291 (557)
Q Consensus 277 ------~~~~~l~~L~~L~l~ 291 (557)
..+..+++|+.||=.
T Consensus 239 ~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESSC
T ss_pred chhHHHHHHHHCcccCeECCc
Confidence 247789999999743
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.23 E-value=0.013 Score=57.93 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=58.7
Q ss_pred CCCCCCcCeeeeccccCceEecccccCCCCCCCCcccccccccccccccccccccccccccccccccccCCccceeeecc
Q 039861 441 LGKLPSLEYLEIEGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKKLEFRNMEELEEWDCGTAIKGEIIIMPRLSSLSIQS 520 (557)
Q Consensus 441 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 520 (557)
+..+++|+.+.+. ..++.++... +.++.+|+.+.+.. .++.+.. ..+..+.+|+.+.|..
T Consensus 284 F~~c~~L~~i~l~--~~i~~I~~~a-----------F~~c~~L~~i~lp~--~v~~I~~-----~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 284 FMNCPALQDIEFS--SRITELPESV-----------FAGCISLKSIDIPE--GITQILD-----DAFAGCEQLERIAIPS 343 (394)
T ss_dssp TTTCTTCCEEECC--TTCCEECTTT-----------TTTCTTCCEEECCT--TCCEECT-----TTTTTCTTCCEEEECT
T ss_pred cccccccccccCC--CcccccCcee-----------ecCCCCcCEEEeCC--cccEehH-----hHhhCCCCCCEEEECc
Confidence 4556677777764 2455555433 23567888888864 3555543 5678899999999975
Q ss_pred CccccCCCC-CcCCCCCcceEEEecCC
Q 039861 521 CPKLKALPD-HLLQKSTLQKLEIWGCP 546 (557)
Q Consensus 521 c~~l~~lp~-~~~~l~~L~~L~l~~c~ 546 (557)
+ ++.++. .+.++++|+.+++.++.
T Consensus 344 s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 344 S--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp T--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred c--cCEEhHhHhhCCCCCCEEEECCce
Confidence 4 778876 56789999999998764
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.93 E-value=0.013 Score=57.51 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=5.5
Q ss_pred CCCCccEEEEe
Q 039861 400 PPPNLKKLQIY 410 (557)
Q Consensus 400 ~~~~L~~L~l~ 410 (557)
...+|+.+.+.
T Consensus 238 ~~~~L~~i~lp 248 (379)
T 4h09_A 238 GMKALDEIAIP 248 (379)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEcC
Confidence 34455555553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.18 E-value=0.023 Score=45.94 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=25.2
Q ss_pred CcCccc--ccchhhhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCcc
Q 039861 244 SVNDIK--EIPTNIEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCE 294 (557)
Q Consensus 244 ~~~~l~--~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~ 294 (557)
+++.++ .+|..+ -.+|++|+|++|. +..+| ..|..+++|++|+|++|.
T Consensus 16 s~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 16 GRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 445555 555432 1245666666665 55555 234555556666555543
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.63 E-value=0.083 Score=51.65 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=27.1
Q ss_pred hhcccCCCeeecccCCcccccc-hhhhccCcCcEeecCCccccccCcc-cccCCCCCcEeecC
Q 039861 255 IEKLLHLKYLNLKSQNKIEKLP-ETLCELHNLERLNVDDCENLRELPR-GIGKLRKLMYIDND 315 (557)
Q Consensus 255 ~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~ 315 (557)
+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.++. +..++. .+.++.+|+.+.+.
T Consensus 259 F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 259 LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred cceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 444555555555322 34443 234455555555554432 444432 24455555555554
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.46 E-value=0.12 Score=44.88 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=60.8
Q ss_pred CCCCcceEEEeccC-Cccc-hhhhhHHHHhcCCceeEEEeccccCCCCcCcccc-----cchhhhcccCCCeeecccCCc
Q 039861 199 KGLRGLRSFLVKSD-EYSW-SSEVLPQLFDKLTCLRALNLKVRKPWSSVNDIKE-----IPTNIEKLLHLKYLNLKSQNK 271 (557)
Q Consensus 199 ~~l~~L~~L~l~~~-~~~~-~~~~~p~~~~~l~~L~~L~L~~~~~~~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~ 271 (557)
.+-+.|+.|++.++ .+.. ....+-..+..-+.|+.|+| ++|.+.. +...+..=+.|+.|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L-------~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSL-------ANTAISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEEC-------TTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEc-------cCCCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 34566777777764 4321 11224455666677778888 5555542 33445555677777777776
Q ss_pred ccc-----cchhhhccCcCcEeecCCccc--cc-----cCcccccCCCCCcEeecCCC
Q 039861 272 IEK-----LPETLCELHNLERLNVDDCEN--LR-----ELPRGIGKLRKLMYIDNDDT 317 (557)
Q Consensus 272 l~~-----lp~~~~~l~~L~~L~l~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 317 (557)
|.. +-+.+..-+.|++|++++|.. +. .+.+.+..-+.|+.|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 542 222333445577777765421 11 12223344456666666654
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.35 E-value=0.087 Score=42.49 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=40.6
Q ss_pred CeeecccCCccc--ccchhhhccCcCcEeecCCccccccCccc-ccCCCCCcEeecCCCC
Q 039861 262 KYLNLKSQNKIE--KLPETLCELHNLERLNVDDCENLRELPRG-IGKLRKLMYIDNDDTD 318 (557)
Q Consensus 262 ~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 318 (557)
..++-+++. ++ .+|..+ -.+|++|+|++|. +..+|.+ +..+++|++|+|.+|.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 367777777 77 888643 2479999999977 8888765 5788999999999873
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.97 E-value=0.29 Score=42.41 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=63.0
Q ss_pred hhhHHHHhcCCceeEEEeccccCCCCcC-ccc-----ccchhhhcccCCCeeecccCCccc-----ccchhhhccCcCcE
Q 039861 219 EVLPQLFDKLTCLRALNLKVRKPWSSVN-DIK-----EIPTNIEKLLHLKYLNLKSQNKIE-----KLPETLCELHNLER 287 (557)
Q Consensus 219 ~~~p~~~~~l~~L~~L~L~~~~~~~~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~~l~-----~lp~~~~~l~~L~~ 287 (557)
..+...+.+-+.|+.|+| +++ .+. .+-..+..-..|+.|+|++|. +. .+-+.+..-+.|++
T Consensus 31 ~~l~~ll~~n~~L~~L~L-------~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~ 102 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNI-------NNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRV 102 (197)
T ss_dssp HHHHHHHTTCSSCCEEEC-------TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCE
T ss_pred HHHHHHHhcCCCccEEEC-------CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCe
Confidence 345555677789999999 553 443 345566677789999999998 65 34455566788999
Q ss_pred eecCCcccccc-----CcccccCCCCCcEeecCCC
Q 039861 288 LNVDDCENLRE-----LPRGIGKLRKLMYIDNDDT 317 (557)
Q Consensus 288 L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 317 (557)
|+|++|. +.. +-+.+..-+.|++|+++++
T Consensus 103 L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 103 LNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp EECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred EecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 9999877 332 3334555567899998865
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.75 E-value=2.7 Score=39.94 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=66.7
Q ss_pred hHHHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHH-HHhhhhhhhhhhcccchhHH-HHhhccCChhhhHHHhhhcCCCCC
Q 039861 2 IGREIVKKCKGLPLAAKTIASLLRSKSTEKEWQN-ILENEIWELEAIKKGLLAPL-LLSYNELPSKVKQCFTYCAVFPKD 79 (557)
Q Consensus 2 i~~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~-~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cfl~~a~fp~~ 79 (557)
.+.+|++.|+|.|+++..++..+....+...|-. +.+.. ...+...+ .+.+ . ++..+..+..+|+ |
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g 294 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-------KGLIMGELEELRR-R-SPRYVDILRAIAL---G 294 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-------HHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C
Confidence 3567899999999999999876532222222211 11110 00011111 1222 2 7888999999998 3
Q ss_pred CccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEEe-chHHHHHH
Q 039861 80 YDIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCKM-HDIVHDFA 146 (557)
Q Consensus 80 ~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~m-hdli~~~~ 146 (557)
..+...+.....+..- +.+ ......+++.|+++++|.... | .+++ |.++++..
T Consensus 295 -~~~~~~l~~~~~~~~~-----~~~-~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 295 -YNRWSLIRDYLAVKGT-----KIP-EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp -CCSHHHHHHHHHHTTC-----CCC-HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred -CCCHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 2455666555433210 111 244667899999999997652 2 2444 56666543
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.30 E-value=5 Score=38.12 Aligned_cols=118 Identities=11% Similarity=0.006 Sum_probs=67.6
Q ss_pred HHHHHHcCCcHHHHHHHHHhhcCCCCHHHHHHHHhhhhhhhhhhcccchhHHH-Hhhc--cCChhhhHHHhhhcCCCCCC
Q 039861 4 REIVKKCKGLPLAAKTIASLLRSKSTEKEWQNILENEIWELEAIKKGLLAPLL-LSYN--ELPSKVKQCFTYCAVFPKDY 80 (557)
Q Consensus 4 ~~iv~~c~GlPLal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cfl~~a~fp~~~ 80 (557)
.+|+++|+|.|+++..++..+........|-... . ......+...+. +.|+ .|++..+..+..+|+ |.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~ 303 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQT---L---EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG 303 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHH---H---HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHH---H---HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC
Confidence 5789999999999999998775332333332111 0 000011111222 2222 688899999999998 32
Q ss_pred ccCHHHHHHHHH-HcCCcCcCCcccHHHHHHHHHHHHHhccCcccccCCCCCCeeeEE-echHHHHH
Q 039861 81 DIQKEELIELWM-AQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDRGDDGEISNCK-MHDIVHDF 145 (557)
Q Consensus 81 ~i~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~-mhdli~~~ 145 (557)
+...+..... ..|. + . .......+++.|+++++|.... + .++ .|.++++.
T Consensus 304 --~~~~l~~~~~~~~g~--~---~-~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 --KWSDVKRALELEEGI--E---I-SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp --CHHHHHHHHHHHHCS--C---C-CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred --CHHHHHHHHHHhcCC--C---C-CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 4555544321 2231 0 0 1234567899999999997643 2 244 46777764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=79.68 E-value=2.3 Score=41.66 Aligned_cols=114 Identities=10% Similarity=-0.067 Sum_probs=63.3
Q ss_pred hHHHHHHHcC------CcHHHHHHHHHh-hc-----CCC--CHHHHHHHHhhhhhhhhhhcccchhHHHHhhccCChhhh
Q 039861 2 IGREIVKKCK------GLPLAAKTIASL-LR-----SKS--TEKEWQNILENEIWELEAIKKGLLAPLLLSYNELPSKVK 67 (557)
Q Consensus 2 i~~~iv~~c~------GlPLal~~~g~~-L~-----~~~--~~~~W~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 67 (557)
....|+++|+ |.|..+..+... .. +.. +.+.+..+..... . ...+.-+++.||.+.+
T Consensus 241 ~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~~~~ 311 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-------A--ASIQTHELEALSIHEL 311 (412)
T ss_dssp HHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCHHHH
Confidence 3567889999 999655544432 11 111 2333443333210 0 2344557789999999
Q ss_pred HHHhhhcCCC--CCCccCHHHHHHHHHH-c-CCcCcCCcccHHHHHHHHHHHHHhccCccccc
Q 039861 68 QCFTYCAVFP--KDYDIQKEELIELWMA-Q-GYLSEKGAKEMEDIGAEYFNILASRSFFQDFD 126 (557)
Q Consensus 68 ~cfl~~a~fp--~~~~i~~~~li~~w~a-~-g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 126 (557)
.++..+|.++ .+..++..++...+.. . .... .... .......+++.|++.++|....
T Consensus 312 ~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 312 IILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN-VKPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC-CCCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 9999998764 2334566666554432 1 1110 0111 1244567899999999998654
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=64.00 E-value=5.1 Score=37.57 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=55.4
Q ss_pred HHHHHHHcCCcHHHHHHHHHhhcC------C--CCHHHHHHHHhhhhhhhhhhcccchhHHHHhhccCChhhhHHHhhhc
Q 039861 3 GREIVKKCKGLPLAAKTIASLLRS------K--STEKEWQNILENEIWELEAIKKGLLAPLLLSYNELPSKVKQCFTYCA 74 (557)
Q Consensus 3 ~~~iv~~c~GlPLal~~~g~~L~~------~--~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a 74 (557)
...++++|+|.|-.+..+...+.. . -+.+....++.. +..++..++..++..+....
T Consensus 193 ~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~ 257 (324)
T 1hqc_A 193 ALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLI 257 (324)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHH
Confidence 467888899999877666544321 1 123333333322 12234456666666665554
Q ss_pred CCCCCCc-----------cCHHHHH----HHHHHcCCcCcC-CcccHHHHHHHHHH-HHHhccCccc
Q 039861 75 VFPKDYD-----------IQKEELI----ELWMAQGYLSEK-GAKEMEDIGAEYFN-ILASRSFFQD 124 (557)
Q Consensus 75 ~fp~~~~-----------i~~~~li----~~w~a~g~~~~~-~~~~~~~~~~~~~~-~L~~~~ll~~ 124 (557)
....|-. +++..+. ++-+..|++... .+..+.+.|.+|++ ++++|+|||+
T Consensus 258 ~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 258 LRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 3333321 3333332 245567888543 34667788888887 8888888874
No 173
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=43.20 E-value=14 Score=19.13 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=15.1
Q ss_pred HcCCcHHHHHHHHHhhcCC
Q 039861 9 KCKGLPLAAKTIASLLRSK 27 (557)
Q Consensus 9 ~c~GlPLal~~~g~~L~~~ 27 (557)
+-.-+|||..+.++.++..
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 3456999999999988654
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=35.42 E-value=1.5e+02 Score=27.83 Aligned_cols=110 Identities=9% Similarity=-0.040 Sum_probs=65.0
Q ss_pred hHHHHHHHcC---CcH-HHHHHHHHhhc-----CC--CCHHHHHHHHhhhhhhhhhhcccchhHHHHhhccCChhhhHHH
Q 039861 2 IGREIVKKCK---GLP-LAAKTIASLLR-----SK--STEKEWQNILENEIWELEAIKKGLLAPLLLSYNELPSKVKQCF 70 (557)
Q Consensus 2 i~~~iv~~c~---GlP-Lal~~~g~~L~-----~~--~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf 70 (557)
..+.++++++ |.| .|+.++..+.. ++ -+.+.++.+++... ...+.-++.+|+.+.+..+
T Consensus 227 ~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l 296 (387)
T 2v1u_A 227 VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVL 296 (387)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHH
Confidence 4567888888 999 44444433321 22 24566766666421 1235567889999988887
Q ss_pred hhhcCCCCC-CccCHHHHHHHHH----HcCCcCcCCcccHHHHHHHHHHHHHhccCccccc
Q 039861 71 TYCAVFPKD-YDIQKEELIELWM----AQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFD 126 (557)
Q Consensus 71 l~~a~fp~~-~~i~~~~li~~w~----a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 126 (557)
+.++....| ..+...++.+... ..| ... .....+..+++.|...+++....
T Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 297 LSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH----VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEEe
Confidence 777744333 2344554444322 233 111 12456778899999999998753
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=28.46 E-value=3.7e+02 Score=25.08 Aligned_cols=109 Identities=8% Similarity=-0.106 Sum_probs=61.2
Q ss_pred HHHHHHHcC---CcHH-HHHHHHHhh--c-C--CCCHHHHHHHHhhhhhhhhhhcccchhHHHHhhccCChhhhHHHhhh
Q 039861 3 GREIVKKCK---GLPL-AAKTIASLL--R-S--KSTEKEWQNILENEIWELEAIKKGLLAPLLLSYNELPSKVKQCFTYC 73 (557)
Q Consensus 3 ~~~iv~~c~---GlPL-al~~~g~~L--~-~--~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~ 73 (557)
.+.++++|+ |-|- |+.++-.+. + + .-+.+.++.+++... ...+.-+++.|+.+.|..+.-+
T Consensus 224 ~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al 293 (384)
T 2qby_B 224 LSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSL 293 (384)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHH
Confidence 456788887 8776 444443332 2 1 225677777766421 1345667889998888777777
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcCcCCcccHHHHHHHHHHHHHhccCcccccC
Q 039861 74 AVFPKDYDIQKEELIELWMAQGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDR 127 (557)
Q Consensus 74 a~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 127 (557)
+....+..+ .+.........| ... .......++++.|.+++++.....
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~g-~~~----~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 294 IESEDVMSA-HKMYTDLCNKFK-QKP----LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HTCCBHHHH-HHHHHHHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHhcccChH-HHHHHHHHHHcC-CCC----CCHHHHHHHHHHHHhCCCEEEEec
Confidence 761110111 112222222233 111 123456678999999999987543
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=21.35 E-value=3.8e+02 Score=24.97 Aligned_cols=88 Identities=15% Similarity=0.032 Sum_probs=49.8
Q ss_pred HhhccCChhhhHHHhhhcCCC---CCCccCHHHHHHHHHH----cCCcCcCCcccHHHHHHHHHHHHHhccCcccccC--
Q 039861 57 LSYNELPSKVKQCFTYCAVFP---KDYDIQKEELIELWMA----QGYLSEKGAKEMEDIGAEYFNILASRSFFQDFDR-- 127 (557)
Q Consensus 57 ~sy~~L~~~~k~cfl~~a~fp---~~~~i~~~~li~~w~a----~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~-- 127 (557)
-.+..|+.+.|..+..++.+. .+..+...++...+.. .|.. .. + ......++++|.++++|.....
T Consensus 281 ~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~---~-~~~~~~~l~~L~~~gli~~~~~~~ 355 (389)
T 1fnn_A 281 EVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER-PR---V-HSQLWSYLNDLREKGIVETRQNKR 355 (389)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-CC---C-HHHHHHHHHHHHHTTSSEEEEC--
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC-CC---C-HHHHHHHHHHHHhCCCeEEeeecc
Confidence 346678888888777777654 2324556666655443 2321 11 1 2345678999999999987654
Q ss_pred --CCCCCeeeEE----echHHHHHHHHh
Q 039861 128 --GDDGEISNCK----MHDIVHDFAQYL 149 (557)
Q Consensus 128 --~~~g~~~~~~----mhdli~~~~~~i 149 (557)
+..|+...++ .||++..+...+
T Consensus 356 ~~g~~g~~~~~~l~~~~~~v~~~~~~~~ 383 (389)
T 1fnn_A 356 GEGVRGRTTLISIGTEPLDTLEAVITKL 383 (389)
T ss_dssp -------CEEEECCSSCHHHHHHHHHHH
T ss_pred CCCCCCceeEEEeCCCHHHHHHHHHHHH
Confidence 2234433333 446666555544
Done!