Query 039862
Match_columns 173
No_of_seqs 122 out of 1100
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14567 triosephosphate isome 100.0 7.9E-67 1.7E-71 440.0 17.9 170 1-171 78-250 (253)
2 PRK14566 triosephosphate isome 100.0 2.2E-66 4.8E-71 438.7 18.0 167 1-168 88-257 (260)
3 PLN02561 triosephosphate isome 100.0 3.5E-66 7.5E-71 436.3 17.8 172 1-172 81-252 (253)
4 PF00121 TIM: Triosephosphate 100.0 1.4E-66 3E-71 436.8 15.2 165 1-165 77-244 (244)
5 PRK00042 tpiA triosephosphate 100.0 7.8E-66 1.7E-70 433.6 17.9 168 1-169 79-249 (250)
6 cd00311 TIM Triosephosphate is 100.0 8.4E-66 1.8E-70 431.7 16.8 165 1-166 77-242 (242)
7 PTZ00333 triosephosphate isome 100.0 1.3E-65 2.7E-70 433.4 17.4 170 1-170 82-253 (255)
8 PRK15492 triosephosphate isome 100.0 1.8E-65 3.8E-70 433.6 18.2 169 1-170 87-259 (260)
9 KOG1643 Triosephosphate isomer 100.0 1.4E-65 3.1E-70 417.9 16.3 168 1-168 79-246 (247)
10 COG0149 TpiA Triosephosphate i 100.0 5.7E-65 1.2E-69 427.2 18.0 169 1-171 81-250 (251)
11 PLN02429 triosephosphate isome 100.0 1.3E-64 2.7E-69 437.1 18.5 171 1-171 140-311 (315)
12 PRK14565 triosephosphate isome 100.0 4E-62 8.6E-67 408.2 17.8 157 1-169 78-235 (237)
13 PRK13962 bifunctional phosphog 100.0 2.8E-62 6E-67 454.7 17.9 168 1-168 474-644 (645)
14 PRK14905 triosephosphate isome 100.0 5.8E-62 1.3E-66 427.4 18.1 169 1-170 88-260 (355)
15 TIGR00419 tim triosephosphate 100.0 3.2E-53 6.9E-58 348.0 13.2 131 1-159 74-204 (205)
16 PRK04302 triosephosphate isome 100.0 6.9E-32 1.5E-36 222.5 13.1 139 1-170 78-220 (223)
17 PRK13111 trpA tryptophan synth 98.6 1.8E-07 3.9E-12 79.5 8.7 118 2-157 111-232 (258)
18 PRK11840 bifunctional sulfur c 98.4 5.1E-06 1.1E-10 72.9 11.7 130 3-167 158-293 (326)
19 PLN02591 tryptophan synthase 98.2 1.1E-05 2.4E-10 68.5 10.1 116 2-157 100-222 (250)
20 PRK13125 trpA tryptophan synth 98.2 5.8E-05 1.3E-09 63.2 13.4 124 2-158 95-219 (244)
21 TIGR01163 rpe ribulose-phospha 98.1 0.00013 2.8E-09 58.5 13.4 126 2-158 73-198 (210)
22 cd04728 ThiG Thiazole synthase 97.9 0.0002 4.3E-09 60.8 11.5 104 19-158 102-209 (248)
23 cd04724 Tryptophan_synthase_al 97.9 0.00043 9.4E-09 58.0 13.0 116 2-156 98-218 (242)
24 PRK00208 thiG thiazole synthas 97.9 0.00026 5.6E-09 60.2 11.5 104 19-158 102-209 (250)
25 cd00429 RPE Ribulose-5-phospha 97.9 0.00082 1.8E-08 53.7 14.0 125 3-158 75-199 (211)
26 cd00331 IGPS Indole-3-glycerol 97.8 0.00058 1.2E-08 55.7 12.3 119 2-159 88-207 (217)
27 cd04729 NanE N-acetylmannosami 97.7 0.00095 2.1E-08 54.6 11.9 126 2-160 86-213 (219)
28 PRK08883 ribulose-phosphate 3- 97.5 0.0019 4.1E-08 53.7 11.9 136 2-168 75-211 (220)
29 PRK05581 ribulose-phosphate 3- 97.5 0.0035 7.5E-08 50.7 13.0 124 3-158 79-203 (220)
30 TIGR00262 trpA tryptophan synt 97.5 0.0024 5.3E-08 54.1 12.0 119 2-157 109-231 (256)
31 cd04722 TIM_phosphate_binding 97.4 0.0024 5.2E-08 49.0 10.0 122 2-154 78-200 (200)
32 CHL00200 trpA tryptophan synth 97.3 0.0045 9.7E-08 52.9 12.1 119 3-157 114-235 (263)
33 cd04726 KGPDC_HPS 3-Keto-L-gul 97.3 0.0073 1.6E-07 48.2 12.5 127 2-166 71-200 (202)
34 PRK00278 trpC indole-3-glycero 97.0 0.016 3.6E-07 49.1 12.5 118 3-159 128-246 (260)
35 cd04730 NPD_like 2-Nitropropan 97.0 0.016 3.6E-07 47.2 12.1 116 2-158 74-190 (236)
36 PLN02334 ribulose-phosphate 3- 97.0 0.027 5.8E-07 46.5 13.4 124 3-158 83-207 (229)
37 TIGR01768 GGGP-family geranylg 96.9 0.016 3.6E-07 48.5 11.5 149 2-165 21-222 (223)
38 PRK01130 N-acetylmannosamine-6 96.7 0.053 1.2E-06 44.3 12.5 35 124-159 173-208 (221)
39 PF03437 BtpA: BtpA family; I 96.6 0.0027 5.9E-08 54.1 4.6 47 93-155 183-229 (254)
40 TIGR00259 thylakoid_BtpA membr 96.5 0.0046 9.9E-08 52.9 5.2 49 92-155 181-229 (257)
41 PTZ00170 D-ribulose-5-phosphat 96.4 0.066 1.4E-06 44.5 11.4 123 2-158 82-206 (228)
42 PRK08091 ribulose-phosphate 3- 96.4 0.2 4.2E-06 42.2 14.0 137 2-169 85-224 (228)
43 PRK00043 thiE thiamine-phospha 96.3 0.061 1.3E-06 43.0 10.6 64 81-158 126-193 (212)
44 cd04723 HisA_HisF Phosphoribos 96.1 0.059 1.3E-06 44.8 9.5 126 3-158 95-223 (233)
45 TIGR03128 RuMP_HxlA 3-hexulose 96.0 0.31 6.7E-06 39.0 13.3 131 2-168 70-202 (206)
46 cd04732 HisA HisA. Phosphorib 96.0 0.013 2.9E-07 47.8 5.4 60 84-158 164-224 (234)
47 PF00290 Trp_syntA: Tryptophan 96.0 0.12 2.7E-06 44.2 11.2 118 2-157 109-230 (259)
48 PRK00748 1-(5-phosphoribosyl)- 96.0 0.059 1.3E-06 44.0 9.0 58 87-158 167-225 (233)
49 PRK08745 ribulose-phosphate 3- 96.0 0.34 7.4E-06 40.4 13.6 136 2-168 79-215 (223)
50 PRK09722 allulose-6-phosphate 95.8 0.43 9.3E-06 40.1 13.6 136 3-168 77-215 (229)
51 cd02812 PcrB_like PcrB_like pr 95.8 0.022 4.9E-07 47.6 5.7 148 4-165 21-218 (219)
52 TIGR00007 phosphoribosylformim 95.8 0.073 1.6E-06 43.5 8.7 57 87-158 166-223 (230)
53 COG0159 TrpA Tryptophan syntha 95.8 0.11 2.4E-06 44.7 9.9 118 2-156 116-236 (265)
54 COG0434 SgcQ Predicted TIM-bar 95.5 0.018 3.8E-07 49.1 4.1 47 93-155 188-234 (263)
55 PRK10550 tRNA-dihydrouridine s 95.5 0.019 4.1E-07 50.1 4.3 41 124-164 194-237 (312)
56 PRK14057 epimerase; Provisiona 95.4 0.53 1.2E-05 40.3 12.8 134 2-168 92-237 (254)
57 PRK13307 bifunctional formalde 95.4 0.31 6.8E-06 44.0 11.9 118 2-158 244-363 (391)
58 PRK13587 1-(5-phosphoribosyl)- 95.3 0.044 9.5E-07 45.8 5.9 131 2-162 92-230 (234)
59 PRK04169 geranylgeranylglycery 95.2 0.049 1.1E-06 45.9 5.8 34 126-160 186-221 (232)
60 PRK07028 bifunctional hexulose 95.0 0.55 1.2E-05 42.3 12.5 118 2-158 75-195 (430)
61 PRK04128 1-(5-phosphoribosyl)- 95.0 0.071 1.5E-06 44.4 6.2 45 124-168 73-118 (228)
62 TIGR03572 WbuZ glycosyl amidat 95.0 0.47 1E-05 38.9 11.0 33 124-156 197-230 (232)
63 cd04740 DHOD_1B_like Dihydroor 95.0 0.37 8E-06 41.0 10.7 45 124-169 231-278 (296)
64 PRK10415 tRNA-dihydrouridine s 94.9 0.18 4E-06 43.9 8.9 45 124-168 194-241 (321)
65 PF01729 QRPTase_C: Quinolinat 94.7 0.094 2E-06 42.0 6.1 51 98-158 110-160 (169)
66 PRK04180 pyridoxal biosynthesi 94.6 0.14 3E-06 44.6 7.2 34 124-158 203-239 (293)
67 cd04731 HisF The cyclase subun 94.5 0.12 2.7E-06 42.6 6.5 44 124-167 193-239 (243)
68 PRK08005 epimerase; Validated 94.4 1.4 3.1E-05 36.5 12.5 132 2-168 75-207 (210)
69 TIGR02129 hisA_euk phosphoribo 94.4 0.087 1.9E-06 45.0 5.3 44 124-168 76-125 (253)
70 PRK13585 1-(5-phosphoribosyl)- 94.3 0.08 1.7E-06 43.6 4.9 43 124-167 193-238 (241)
71 cd04731 HisF The cyclase subun 94.2 0.13 2.8E-06 42.6 5.9 45 124-169 71-118 (243)
72 TIGR03572 WbuZ glycosyl amidat 94.2 0.17 3.7E-06 41.5 6.6 74 79-168 45-120 (232)
73 COG1411 Uncharacterized protei 94.1 0.095 2E-06 43.7 4.9 58 87-158 158-215 (229)
74 PF00977 His_biosynth: Histidi 93.7 0.076 1.7E-06 44.0 3.7 62 79-157 162-224 (229)
75 COG0042 tRNA-dihydrouridine sy 93.7 0.095 2.1E-06 46.0 4.5 40 125-164 199-241 (323)
76 TIGR00734 hisAF_rel hisA/hisF 93.6 0.12 2.5E-06 42.9 4.6 59 85-157 159-217 (221)
77 TIGR00007 phosphoribosylformim 93.6 0.19 4.2E-06 41.0 5.9 46 124-169 72-119 (230)
78 PRK01033 imidazole glycerol ph 93.6 0.18 3.8E-06 42.6 5.7 61 83-157 169-230 (258)
79 TIGR00735 hisF imidazoleglycer 93.5 0.16 3.4E-06 42.6 5.4 45 124-169 74-121 (254)
80 TIGR00693 thiE thiamine-phosph 93.1 0.37 8.1E-06 38.2 6.6 66 79-158 116-185 (196)
81 PF01884 PcrB: PcrB family; I 92.9 0.24 5.1E-06 41.8 5.5 36 123-158 181-216 (230)
82 cd02803 OYE_like_FMN_family Ol 92.9 3.4 7.4E-05 35.4 12.8 38 124-161 281-320 (327)
83 cd02801 DUS_like_FMN Dihydrour 92.8 0.17 3.8E-06 40.9 4.4 42 124-165 183-227 (231)
84 COG0106 HisA Phosphoribosylfor 92.8 0.92 2E-05 38.6 8.8 129 2-159 91-227 (241)
85 TIGR00433 bioB biotin syntheta 92.7 4.1 8.8E-05 34.3 12.8 133 2-155 127-275 (296)
86 COG1646 Predicted phosphate-bi 92.7 0.3 6.5E-06 41.5 5.7 163 2-169 35-238 (240)
87 TIGR01769 GGGP geranylgeranylg 92.6 0.25 5.5E-06 40.8 5.1 46 2-52 18-64 (205)
88 PRK14024 phosphoribosyl isomer 92.5 0.33 7.1E-06 40.5 5.7 62 83-158 163-227 (241)
89 PRK00748 1-(5-phosphoribosyl)- 92.4 0.3 6.4E-06 39.8 5.3 45 124-168 74-120 (233)
90 PF00834 Ribul_P_3_epim: Ribul 92.4 0.45 9.8E-06 39.0 6.4 124 2-156 74-197 (201)
91 PRK07428 nicotinate-nucleotide 92.2 0.49 1.1E-05 41.1 6.7 53 96-158 224-276 (288)
92 PF01207 Dus: Dihydrouridine s 92.1 0.07 1.5E-06 46.3 1.3 40 124-163 183-225 (309)
93 PRK07455 keto-hydroxyglutarate 91.9 0.41 8.9E-06 38.6 5.5 65 84-158 103-185 (187)
94 PRK01033 imidazole glycerol ph 91.9 0.53 1.2E-05 39.7 6.4 74 79-169 45-121 (258)
95 PRK07259 dihydroorotate dehydr 91.5 1.8 3.9E-05 37.0 9.3 44 124-168 234-280 (301)
96 TIGR00343 pyridoxal 5'-phospha 91.3 1.5 3.3E-05 38.2 8.6 34 124-158 197-233 (287)
97 PRK02083 imidazole glycerol ph 90.9 0.9 2E-05 37.9 6.8 45 124-168 197-244 (253)
98 PRK02083 imidazole glycerol ph 90.8 0.49 1.1E-05 39.5 5.1 44 124-168 74-120 (253)
99 TIGR00737 nifR3_yhdG putative 90.8 0.4 8.7E-06 41.5 4.7 45 124-168 192-239 (319)
100 PRK06256 biotin synthase; Vali 90.8 4.2 9.2E-05 35.1 11.0 133 2-155 156-302 (336)
101 cd02068 radical_SAM_B12_BD B12 90.7 2 4.3E-05 31.8 7.9 74 79-170 39-112 (127)
102 cd04732 HisA HisA. Phosphorib 90.6 1.6 3.4E-05 35.5 7.9 74 78-168 43-119 (234)
103 PLN02446 (5-phosphoribosyl)-5- 90.6 0.55 1.2E-05 40.4 5.2 43 125-168 84-132 (262)
104 TIGR01919 hisA-trpF 1-(5-phosp 90.4 0.48 1E-05 39.9 4.7 60 85-158 168-230 (243)
105 cd00564 TMP_TenI Thiamine mono 90.2 0.88 1.9E-05 35.3 5.8 42 124-166 150-192 (196)
106 PRK13585 1-(5-phosphoribosyl)- 90.0 0.72 1.6E-05 37.9 5.3 45 124-168 76-122 (241)
107 cd01572 QPRTase Quinolinate ph 89.9 0.62 1.3E-05 39.9 5.0 58 79-158 202-259 (268)
108 PRK08508 biotin synthase; Prov 89.9 7.7 0.00017 33.0 11.7 135 2-158 106-254 (279)
109 cd02810 DHOD_DHPD_FMN Dihydroo 89.5 12 0.00025 31.5 13.8 42 124-166 243-288 (289)
110 PRK14114 1-(5-phosphoribosyl)- 89.5 0.74 1.6E-05 38.8 5.1 67 85-165 163-237 (241)
111 CHL00162 thiG thiamin biosynth 89.5 0.96 2.1E-05 39.0 5.8 62 91-166 169-232 (267)
112 cd02930 DCR_FMN 2,4-dienoyl-Co 89.1 5.4 0.00012 35.1 10.4 42 124-165 276-320 (353)
113 PRK11815 tRNA-dihydrouridine s 88.9 0.81 1.8E-05 40.1 5.2 42 124-167 205-249 (333)
114 COG0036 Rpe Pentose-5-phosphat 88.6 14 0.00029 31.2 13.0 133 3-169 79-214 (220)
115 PRK05848 nicotinate-nucleotide 88.4 0.49 1.1E-05 40.8 3.4 52 97-158 211-262 (273)
116 cd00405 PRAI Phosphoribosylant 88.2 0.48 1E-05 38.2 3.0 51 92-158 136-186 (203)
117 PRK13586 1-(5-phosphoribosyl)- 88.1 0.81 1.8E-05 38.3 4.4 57 85-157 165-222 (232)
118 TIGR00742 yjbN tRNA dihydrouri 87.8 1.1 2.4E-05 39.2 5.2 43 124-168 195-240 (318)
119 TIGR00735 hisF imidazoleglycer 87.8 1.5 3.4E-05 36.6 5.9 45 124-168 199-246 (254)
120 PRK04128 1-(5-phosphoribosyl)- 87.7 0.48 1.1E-05 39.4 2.8 34 124-158 182-216 (228)
121 TIGR03151 enACPred_II putative 87.4 12 0.00025 32.6 11.3 62 81-157 131-194 (307)
122 TIGR02026 BchE magnesium-proto 87.3 4.9 0.00011 37.0 9.4 75 78-170 62-137 (497)
123 PRK14024 phosphoribosyl isomer 86.9 1.7 3.7E-05 36.2 5.7 46 124-169 75-122 (241)
124 PRK02615 thiamine-phosphate py 86.9 3.6 7.8E-05 36.6 8.0 78 79-171 260-345 (347)
125 cd04727 pdxS PdxS is a subunit 86.9 1.3 2.9E-05 38.5 5.1 34 124-158 194-230 (283)
126 PRK08385 nicotinate-nucleotide 86.8 0.97 2.1E-05 39.1 4.2 54 97-158 211-264 (278)
127 TIGR01037 pyrD_sub1_fam dihydr 86.4 2.3 5E-05 36.2 6.4 45 124-169 234-281 (300)
128 PRK13587 1-(5-phosphoribosyl)- 86.1 1.9 4.1E-05 36.0 5.5 45 124-168 76-122 (234)
129 PRK07896 nicotinate-nucleotide 86.0 0.98 2.1E-05 39.3 3.9 53 96-158 227-279 (289)
130 cd01137 PsaA Metal binding pro 85.8 5.1 0.00011 34.2 8.2 71 67-148 165-251 (287)
131 COG0106 HisA Phosphoribosylfor 85.6 2.2 4.8E-05 36.3 5.7 46 124-169 75-122 (241)
132 cd04734 OYE_like_3_FMN Old yel 85.5 1.1 2.3E-05 39.5 3.9 42 124-165 285-329 (343)
133 cd00452 KDPG_aldolase KDPG and 85.3 10 0.00022 30.3 9.2 34 124-158 143-176 (190)
134 PF00977 His_biosynth: Histidi 85.0 1.2 2.5E-05 37.0 3.7 46 125-170 74-121 (229)
135 cd04733 OYE_like_2_FMN Old yel 84.8 1.3 2.9E-05 38.6 4.2 38 124-161 292-331 (338)
136 cd01568 QPRTase_NadC Quinolina 84.7 0.99 2.1E-05 38.5 3.3 59 80-158 202-260 (269)
137 PRK08649 inosine 5-monophospha 84.6 11 0.00023 33.9 9.9 72 80-157 211-289 (368)
138 cd00331 IGPS Indole-3-glycerol 84.2 2.7 5.9E-05 34.0 5.5 45 124-168 72-117 (217)
139 cd01573 modD_like ModD; Quinol 84.2 2.1 4.6E-05 36.6 5.1 57 80-155 204-260 (272)
140 TIGR01919 hisA-trpF 1-(5-phosp 84.0 2.7 5.8E-05 35.3 5.6 44 125-168 75-120 (243)
141 PLN02389 biotin synthase 84.0 29 0.00062 31.2 12.4 140 2-157 182-333 (379)
142 COG1908 FrhD Coenzyme F420-red 83.7 1.1 2.3E-05 34.7 2.7 35 123-158 31-65 (132)
143 PF00697 PRAI: N-(5'phosphorib 83.6 0.3 6.4E-06 39.6 -0.4 50 92-154 128-177 (197)
144 cd02933 OYE_like_FMN Old yello 83.5 1.7 3.7E-05 38.2 4.4 41 124-164 285-327 (338)
145 TIGR01334 modD putative molybd 83.5 2.4 5.3E-05 36.6 5.2 50 96-155 216-265 (277)
146 PRK09545 znuA high-affinity zi 83.3 6.8 0.00015 34.0 7.9 59 79-148 203-277 (311)
147 PRK09140 2-dehydro-3-deoxy-6-p 83.2 24 0.00051 28.9 11.9 34 124-158 151-184 (206)
148 PRK07695 transcriptional regul 83.2 6.9 0.00015 31.3 7.5 34 124-158 149-182 (201)
149 cd00958 DhnA Class I fructose- 83.2 17 0.00037 29.6 9.9 44 124-168 179-230 (235)
150 PF02581 TMP-TENI: Thiamine mo 82.6 6.7 0.00014 31.0 7.1 66 78-155 114-179 (180)
151 PRK06096 molybdenum transport 82.3 2.7 5.7E-05 36.5 5.0 51 95-155 216-266 (284)
152 PF09370 TIM-br_sig_trns: TIM- 80.9 6 0.00013 34.2 6.6 86 80-171 172-265 (268)
153 PRK08072 nicotinate-nucleotide 80.8 5.9 0.00013 34.2 6.6 49 97-158 217-265 (277)
154 cd02929 TMADH_HD_FMN Trimethyl 80.4 23 0.00049 31.5 10.4 42 124-165 289-333 (370)
155 TIGR00078 nadC nicotinate-nucl 79.9 6.5 0.00014 33.6 6.5 56 80-157 199-254 (265)
156 COG2069 CdhD CO dehydrogenase/ 79.9 4.9 0.00011 35.8 5.7 73 88-170 170-249 (403)
157 cd02067 B12-binding B12 bindin 79.7 4.5 9.7E-05 29.5 4.8 50 96-154 61-110 (119)
158 TIGR03772 anch_rpt_subst ancho 79.4 11 0.00023 35.1 8.2 76 62-148 354-447 (479)
159 PLN02617 imidazole glycerol ph 79.2 4.1 9E-05 38.3 5.5 46 105-158 302-359 (538)
160 COG3142 CutC Uncharacterized p 79.1 2.1 4.6E-05 36.4 3.2 39 104-147 156-194 (241)
161 cd02911 arch_FMN Archeal FMN-b 78.8 2.7 5.9E-05 35.1 3.8 39 124-164 191-231 (233)
162 PRK06543 nicotinate-nucleotide 77.2 2.4 5.3E-05 36.7 3.1 50 97-159 222-271 (281)
163 PF03982 DAGAT: Diacylglycerol 77.2 11 0.00024 32.7 7.2 84 34-118 172-280 (297)
164 PRK13586 1-(5-phosphoribosyl)- 77.1 6.9 0.00015 32.7 5.8 43 125-168 74-119 (232)
165 TIGR02814 pfaD_fam PfaD family 76.4 22 0.00047 32.9 9.2 72 80-157 184-257 (444)
166 PRK11572 copper homeostasis pr 76.1 7.2 0.00016 33.3 5.6 47 94-150 149-195 (248)
167 PRK10605 N-ethylmaleimide redu 76.0 4.3 9.2E-05 36.1 4.4 40 124-163 292-332 (362)
168 cd04743 NPD_PKS 2-Nitropropane 75.9 38 0.00082 30.0 10.3 102 34-157 96-206 (320)
169 PRK13523 NADPH dehydrogenase N 75.4 2.3 5.1E-05 37.4 2.6 45 124-168 275-322 (337)
170 cd04738 DHOD_2_like Dihydrooro 75.4 23 0.0005 30.8 8.8 43 124-167 280-326 (327)
171 PRK01060 endonuclease IV; Prov 75.2 22 0.00049 29.4 8.4 78 29-109 90-168 (281)
172 PRK05742 nicotinate-nucleotide 75.0 2.6 5.6E-05 36.4 2.7 51 96-159 217-267 (277)
173 PRK06106 nicotinate-nucleotide 75.0 2.7 5.9E-05 36.4 2.8 49 97-158 223-271 (281)
174 PRK06559 nicotinate-nucleotide 74.9 3.2 7E-05 36.2 3.3 49 97-158 226-274 (290)
175 cd01019 ZnuA Zinc binding prot 74.6 22 0.00047 30.3 8.3 59 79-148 179-253 (286)
176 cd02932 OYE_YqiM_FMN Old yello 74.5 2.8 6.1E-05 36.5 2.8 38 124-161 290-329 (336)
177 PRK09016 quinolinate phosphori 74.4 3.1 6.7E-05 36.4 3.0 50 97-159 237-286 (296)
178 PRK06978 nicotinate-nucleotide 73.8 3.5 7.7E-05 36.0 3.3 50 97-159 234-283 (294)
179 PRK03512 thiamine-phosphate py 73.7 32 0.00069 28.2 8.7 66 79-158 122-191 (211)
180 PF03932 CutC: CutC family; I 73.0 3.9 8.4E-05 33.8 3.2 116 2-149 79-195 (201)
181 TIGR03234 OH-pyruv-isom hydrox 72.8 16 0.00034 29.9 6.8 106 2-109 46-167 (254)
182 COG0269 SgbH 3-hexulose-6-phos 72.2 51 0.0011 27.7 9.6 123 2-158 74-197 (217)
183 PRK14114 1-(5-phosphoribosyl)- 72.0 8.5 0.00018 32.4 5.1 42 125-167 74-117 (241)
184 PF03060 NMO: Nitronate monoox 71.0 29 0.00063 30.2 8.4 93 34-157 129-223 (330)
185 PLN02446 (5-phosphoribosyl)-5- 70.8 9.1 0.0002 32.9 5.0 55 88-156 185-241 (262)
186 cd01017 AdcA Metal binding pro 70.1 28 0.0006 29.4 7.9 60 79-149 171-246 (282)
187 PRK09997 hydroxypyruvate isome 70.0 35 0.00075 28.1 8.3 106 2-108 47-167 (258)
188 cd04735 OYE_like_4_FMN Old yel 70.0 3.2 7E-05 36.5 2.2 37 124-161 284-322 (353)
189 PRK07107 inosine 5-monophospha 70.0 87 0.0019 29.3 11.6 51 98-154 331-382 (502)
190 PF02310 B12-binding: B12 bind 69.6 5 0.00011 28.9 2.8 63 78-155 50-113 (121)
191 TIGR00736 nifR3_rel_arch TIM-b 69.1 7.5 0.00016 32.7 4.1 36 124-160 191-227 (231)
192 PF00218 IGPS: Indole-3-glycer 69.0 38 0.00082 28.9 8.4 116 5-158 128-243 (254)
193 cd01018 ZntC Metal binding pro 68.3 70 0.0015 26.7 10.6 77 79-168 170-260 (266)
194 cd02931 ER_like_FMN Enoate red 68.1 7.5 0.00016 34.7 4.2 41 124-164 305-348 (382)
195 KOG2335 tRNA-dihydrouridine sy 68.0 6.4 0.00014 35.4 3.6 37 125-161 204-243 (358)
196 PLN02716 nicotinate-nucleotide 67.8 3.7 8.1E-05 36.1 2.1 48 98-158 248-295 (308)
197 COG0107 HisF Imidazoleglycerol 67.3 8.3 0.00018 33.0 4.0 61 95-162 52-113 (256)
198 cd07938 DRE_TIM_HMGL 3-hydroxy 67.0 79 0.0017 26.9 10.6 73 1-73 26-121 (274)
199 TIGR00683 nanA N-acetylneurami 66.3 15 0.00033 31.4 5.6 51 96-154 50-104 (290)
200 PRK05286 dihydroorotate dehydr 66.0 39 0.00084 29.7 8.2 46 124-170 289-338 (344)
201 cd00952 CHBPH_aldolase Trans-o 65.7 89 0.0019 27.0 10.7 136 3-167 37-183 (309)
202 cd02071 MM_CoA_mut_B12_BD meth 65.4 19 0.00042 26.6 5.3 35 123-158 80-114 (122)
203 PRK13958 N-(5'-phosphoribosyl) 65.0 6.3 0.00014 32.3 2.8 28 125-152 153-181 (207)
204 PRK02261 methylaspartate mutas 64.8 24 0.00053 27.0 5.9 54 97-158 66-124 (137)
205 smart00518 AP2Ec AP endonuclea 63.4 56 0.0012 26.9 8.3 102 3-110 53-163 (273)
206 PF02662 FlpD: Methyl-viologen 63.1 6.2 0.00013 29.9 2.3 33 124-157 31-63 (124)
207 PRK03170 dihydrodipicolinate s 62.8 94 0.002 26.2 11.6 137 3-167 30-176 (292)
208 COG0329 DapA Dihydrodipicolina 62.7 22 0.00049 30.7 6.0 68 93-168 48-129 (299)
209 PF01261 AP_endonuc_2: Xylose 62.6 30 0.00065 26.5 6.2 107 2-109 34-154 (213)
210 cd04741 DHOD_1A_like Dihydroor 61.9 39 0.00084 29.0 7.3 45 124-169 243-291 (294)
211 COG3836 HpcH 2,4-dihydroxyhept 61.8 4.3 9.4E-05 34.7 1.3 23 135-157 157-179 (255)
212 cd01569 PBEF_like pre-B-cell c 61.6 13 0.00028 34.0 4.4 56 103-158 297-367 (407)
213 cd01571 NAPRTase_B Nicotinate 61.5 14 0.0003 32.2 4.4 52 98-158 227-278 (302)
214 KOG1606 Stationary phase-induc 61.5 9 0.0002 32.6 3.1 34 124-158 207-243 (296)
215 cd06542 GH18_EndoS-like Endo-b 61.2 78 0.0017 26.0 8.8 86 27-113 50-141 (255)
216 cd00950 DHDPS Dihydrodipicolin 60.6 1E+02 0.0022 25.9 11.8 137 2-167 28-175 (284)
217 cd00516 PRTase_typeII Phosphor 60.5 24 0.00051 29.7 5.6 59 97-158 214-272 (281)
218 PLN02898 HMP-P kinase/thiamin- 60.1 21 0.00046 32.8 5.6 68 79-158 410-480 (502)
219 PRK08662 nicotinate phosphorib 59.8 15 0.00033 32.5 4.5 54 99-158 240-293 (343)
220 cd01016 TroA Metal binding pro 59.7 63 0.0014 27.3 8.1 54 79-143 161-230 (276)
221 cd01833 XynB_like SGNH_hydrola 59.5 30 0.00066 25.6 5.6 46 44-96 2-53 (157)
222 PF00150 Cellulase: Cellulase 59.2 55 0.0012 26.5 7.4 49 2-51 28-85 (281)
223 PRK06512 thiamine-phosphate py 58.7 21 0.00046 29.5 4.9 66 79-158 131-197 (221)
224 PLN02411 12-oxophytodienoate r 58.1 15 0.00032 33.1 4.1 41 124-164 313-354 (391)
225 PRK06552 keto-hydroxyglutarate 57.6 26 0.00057 28.9 5.3 45 123-168 154-202 (213)
226 PRK12858 tagatose 1,6-diphosph 57.4 12 0.00027 33.2 3.4 36 123-158 240-281 (340)
227 COG3412 Uncharacterized protei 57.3 37 0.0008 26.3 5.6 60 97-165 10-82 (129)
228 cd04723 HisA_HisF Phosphoribos 56.9 27 0.00058 28.9 5.2 44 124-168 78-123 (233)
229 KOG0538 Glycolate oxidase [Ene 56.8 23 0.00051 31.6 5.0 36 122-157 276-311 (363)
230 cd02940 DHPD_FMN Dihydropyrimi 56.3 25 0.00054 30.1 5.1 43 124-167 252-298 (299)
231 PF05690 ThiG: Thiazole biosyn 56.1 12 0.00026 32.0 3.0 53 91-157 155-208 (247)
232 TIGR03699 mena_SCO4550 menaqui 56.1 1.2E+02 0.0025 26.3 9.3 133 2-152 147-300 (340)
233 PF00724 Oxidored_FMN: NADH:fl 56.0 22 0.00048 31.1 4.8 50 104-163 281-332 (341)
234 PRK08999 hypothetical protein; 55.9 48 0.001 28.1 6.8 65 79-155 246-310 (312)
235 TIGR03471 HpnJ hopanoid biosyn 55.9 32 0.0007 31.2 6.0 54 93-155 75-129 (472)
236 cd00019 AP2Ec AP endonuclease 55.2 72 0.0016 26.4 7.6 82 28-110 85-166 (279)
237 PRK09427 bifunctional indole-3 55.1 1.8E+02 0.0038 27.0 11.3 96 29-158 147-243 (454)
238 COG4064 MtrG Tetrahydromethano 55.1 4.7 0.0001 28.1 0.4 35 97-131 12-56 (75)
239 PF14488 DUF4434: Domain of un 55.0 1E+02 0.0023 24.3 11.8 87 2-88 27-131 (166)
240 cd04747 OYE_like_5_FMN Old yel 54.8 15 0.00032 32.8 3.6 38 124-161 280-337 (361)
241 PRK08255 salicylyl-CoA 5-hydro 54.7 16 0.00035 35.5 4.1 38 124-161 687-726 (765)
242 PF12327 FtsZ_C: FtsZ family, 54.6 11 0.00024 27.1 2.3 76 44-136 3-80 (95)
243 PRK07565 dihydroorotate dehydr 53.6 41 0.00088 29.3 6.1 46 124-170 239-288 (334)
244 PRK06843 inosine 5-monophospha 53.5 1.1E+02 0.0025 27.9 9.0 32 124-156 256-288 (404)
245 PRK13209 L-xylulose 5-phosphat 53.4 42 0.00092 27.8 6.0 100 3-108 65-176 (283)
246 COG0157 NadC Nicotinate-nucleo 53.2 21 0.00046 31.1 4.1 51 97-158 217-267 (280)
247 PRK07188 nicotinate phosphorib 53.1 33 0.00071 30.7 5.5 54 98-159 262-316 (352)
248 cd00599 GH25_muramidase Endo-N 53.0 1.1E+02 0.0023 23.8 8.1 105 3-132 16-127 (186)
249 PRK09198 putative nicotinate p 52.9 24 0.00052 32.8 4.7 56 103-158 300-370 (463)
250 PHA02594 nadV nicotinamide pho 52.7 25 0.00054 32.8 4.8 36 123-158 333-375 (470)
251 PRK06934 flavodoxin; Provision 52.6 15 0.00033 30.7 3.1 118 26-157 72-201 (221)
252 COG0135 TrpF Phosphoribosylant 52.5 34 0.00075 28.4 5.2 104 21-154 80-184 (208)
253 COG0134 TrpC Indole-3-glycerol 51.9 1.5E+02 0.0033 25.4 9.1 98 28-158 143-241 (254)
254 COG1349 GlpR Transcriptional r 51.7 29 0.00063 29.2 4.7 105 15-159 66-177 (253)
255 PRK01222 N-(5'-phosphoribosyl) 51.5 13 0.00028 30.5 2.5 28 125-152 155-182 (210)
256 PF10137 TIR-like: Predicted n 51.1 22 0.00047 27.1 3.5 108 12-154 2-118 (125)
257 PRK04161 tagatose 1,6-diphosph 51.1 32 0.0007 30.6 5.0 61 89-159 216-283 (329)
258 PF03198 Glyco_hydro_72: Gluca 50.5 1.8E+02 0.0039 25.8 9.6 117 2-131 60-183 (314)
259 PRK12290 thiE thiamine-phospha 49.9 99 0.0021 28.7 8.1 75 78-158 319-397 (437)
260 COG5564 Predicted TIM-barrel e 49.7 63 0.0014 27.7 6.3 86 82-172 179-272 (276)
261 PRK13306 ulaD 3-keto-L-gulonat 49.6 89 0.0019 25.6 7.2 61 82-158 136-196 (216)
262 PF01297 TroA: Periplasmic sol 48.9 1.5E+02 0.0032 24.3 8.5 77 80-167 151-247 (256)
263 PF02836 Glyco_hydro_2_C: Glyc 48.9 43 0.00093 28.3 5.4 95 2-112 43-148 (298)
264 TIGR01501 MthylAspMutase methy 47.9 56 0.0012 25.2 5.4 54 97-158 64-122 (134)
265 PLN02417 dihydrodipicolinate s 47.0 1.8E+02 0.0038 24.6 12.2 50 2-51 29-80 (280)
266 PF07745 Glyco_hydro_53: Glyco 46.6 35 0.00075 30.3 4.5 44 2-51 31-81 (332)
267 KOG3798 Predicted Zn-dependent 46.5 22 0.00049 31.1 3.2 30 82-112 263-292 (343)
268 COG0214 SNZ1 Pyridoxine biosyn 46.4 23 0.00049 30.6 3.2 44 124-168 206-257 (296)
269 KOG4175 Tryptophan synthase al 46.3 30 0.00064 29.3 3.8 53 93-156 184-238 (268)
270 PRK09517 multifunctional thiam 46.2 51 0.0011 32.2 6.0 67 80-158 129-199 (755)
271 PRK04531 acetylglutamate kinas 46.0 39 0.00084 30.6 4.9 49 34-86 122-171 (398)
272 TIGR00734 hisAF_rel hisA/hisF 46.0 37 0.00079 28.0 4.4 38 125-162 78-118 (221)
273 cd06413 GH25_muramidase_1 Unch 45.6 1.5E+02 0.0033 23.4 9.0 107 3-131 19-132 (191)
274 cd04739 DHOD_like Dihydroorota 45.5 2E+02 0.0044 24.9 11.2 46 124-170 237-286 (325)
275 PRK12399 tagatose 1,6-diphosph 45.1 44 0.00096 29.7 4.9 59 91-159 216-281 (324)
276 PRK09856 fructoselysine 3-epim 45.0 1.7E+02 0.0037 23.9 10.2 10 79-88 141-150 (275)
277 PF00478 IMPDH: IMP dehydrogen 45.0 34 0.00074 30.7 4.3 45 99-153 133-177 (352)
278 TIGR01949 AroFGH_arch predicte 44.5 47 0.001 27.7 4.9 35 123-158 191-232 (258)
279 PLN02209 serine carboxypeptida 44.4 57 0.0012 29.9 5.7 61 99-160 144-215 (437)
280 PRK12616 pyridoxal kinase; Rev 43.9 42 0.00091 28.1 4.5 43 59-112 57-99 (270)
281 PRK10128 2-keto-3-deoxy-L-rham 42.8 18 0.00039 31.0 2.1 47 2-52 33-79 (267)
282 cd02065 B12-binding_like B12 b 42.4 56 0.0012 23.3 4.5 30 124-157 80-109 (125)
283 cd00851 MTH1175 This uncharact 42.2 47 0.001 23.0 4.0 38 2-51 57-94 (103)
284 PRK13803 bifunctional phosphor 42.2 30 0.00066 33.0 3.7 46 91-152 142-189 (610)
285 PRK01026 tetrahydromethanopter 41.9 9.4 0.0002 27.1 0.2 33 100-132 25-57 (77)
286 COG2185 Sbm Methylmalonyl-CoA 41.7 93 0.002 24.5 5.8 61 99-168 77-137 (143)
287 cd00952 CHBPH_aldolase Trans-o 41.6 61 0.0013 28.0 5.3 66 95-168 56-133 (309)
288 PRK03620 5-dehydro-4-deoxygluc 41.6 69 0.0015 27.5 5.6 53 92-152 52-107 (303)
289 TIGR00674 dapA dihydrodipicoli 41.1 2.2E+02 0.0047 24.0 12.2 137 3-167 27-173 (285)
290 PF01081 Aldolase: KDPG and KH 41.0 86 0.0019 25.7 5.8 36 123-159 147-182 (196)
291 PF01661 Macro: Macro domain; 41.0 57 0.0012 23.0 4.3 44 59-105 73-117 (118)
292 TIGR01149 mtrG N5-methyltetrah 40.9 9.6 0.00021 26.5 0.1 33 100-132 22-54 (70)
293 TIGR00097 HMP-P_kinase phospho 40.9 57 0.0012 26.8 4.8 43 59-112 50-92 (254)
294 PF04210 MtrG: Tetrahydrometha 40.8 9.9 0.00021 26.5 0.2 32 100-131 22-53 (70)
295 PLN02213 sinapoylglucose-malat 40.7 59 0.0013 28.1 5.0 60 99-159 28-98 (319)
296 PTZ00472 serine carboxypeptida 40.6 68 0.0015 29.4 5.6 60 99-159 148-218 (462)
297 cd02072 Glm_B12_BD B12 binding 40.4 74 0.0016 24.4 5.0 52 97-156 62-118 (128)
298 TIGR03551 F420_cofH 7,8-dideme 40.3 1.9E+02 0.004 25.2 8.1 152 2-170 145-333 (343)
299 TIGR03239 GarL 2-dehydro-3-deo 40.1 21 0.00047 30.1 2.2 48 1-52 26-73 (249)
300 TIGR02311 HpaI 2,4-dihydroxyhe 40.0 21 0.00046 30.0 2.1 121 2-155 27-172 (249)
301 PF01702 TGT: Queuine tRNA-rib 40.0 89 0.0019 25.7 5.8 43 126-169 59-107 (238)
302 cd04737 LOX_like_FMN L-Lactate 39.9 55 0.0012 29.2 4.8 35 123-158 275-310 (351)
303 cd01987 USP_OKCHK USP domain i 39.7 1.3E+02 0.0029 21.1 9.2 54 99-158 44-97 (124)
304 cd00598 GH18_chitinase-like Th 39.1 1.8E+02 0.004 22.5 8.6 104 7-114 22-138 (210)
305 PRK05692 hydroxymethylglutaryl 38.9 2.5E+02 0.0054 24.1 11.5 73 1-73 32-127 (287)
306 TIGR01304 IMP_DH_rel_2 IMP deh 38.6 51 0.0011 29.7 4.4 32 124-156 188-219 (369)
307 cd00951 KDGDH 5-dehydro-4-deox 38.5 83 0.0018 26.7 5.6 52 95-154 48-102 (289)
308 COG3370 Uncharacterized protei 38.3 17 0.00037 27.5 1.1 41 8-50 36-76 (113)
309 cd02922 FCB2_FMN Flavocytochro 38.2 54 0.0012 29.1 4.5 36 123-158 270-305 (344)
310 PTZ00493 phosphomethylpyrimidi 38.2 64 0.0014 28.5 4.9 43 59-112 56-98 (321)
311 cd03174 DRE_TIM_metallolyase D 38.0 2.2E+02 0.0047 23.1 9.6 75 27-113 114-188 (265)
312 TIGR00640 acid_CoA_mut_C methy 37.8 1.1E+02 0.0024 23.2 5.6 53 97-158 65-117 (132)
313 PF01715 IPPT: IPP transferase 37.6 21 0.00045 30.2 1.7 25 102-133 42-66 (253)
314 PRK10558 alpha-dehydro-beta-de 37.5 24 0.00052 29.9 2.1 47 2-52 34-80 (256)
315 TIGR01303 IMP_DH_rel_1 IMP deh 37.4 74 0.0016 29.5 5.4 47 99-155 250-296 (475)
316 PRK05718 keto-hydroxyglutarate 37.4 58 0.0013 26.9 4.3 45 123-169 154-205 (212)
317 PLN02617 imidazole glycerol ph 37.3 65 0.0014 30.4 5.1 36 123-158 481-517 (538)
318 COG2249 MdaB Putative NADPH-qu 36.6 54 0.0012 26.6 3.9 69 11-92 4-81 (189)
319 COG1927 Mtd Coenzyme F420-depe 36.5 96 0.0021 26.5 5.4 59 89-156 35-97 (277)
320 PRK08649 inosine 5-monophospha 36.5 53 0.0011 29.5 4.2 31 124-155 187-217 (368)
321 cd00861 ProRS_anticodon_short 36.2 43 0.00093 22.8 2.9 42 2-53 25-66 (94)
322 cd04742 NPD_FabD 2-Nitropropan 35.8 1.4E+02 0.0031 27.4 6.9 70 83-157 181-252 (418)
323 PRK13305 sgbH 3-keto-L-gulonat 35.8 1.7E+02 0.0036 24.3 6.8 61 95-168 146-211 (218)
324 COG4981 Enoyl reductase domain 35.5 1.2E+02 0.0025 29.5 6.3 83 66-157 162-257 (717)
325 cd03332 LMO_FMN L-Lactate 2-mo 35.4 46 0.001 30.1 3.6 35 123-157 307-341 (383)
326 PF01301 Glyco_hydro_35: Glyco 35.1 60 0.0013 28.3 4.2 49 2-50 31-85 (319)
327 PRK09427 bifunctional indole-3 35.0 51 0.0011 30.4 3.9 45 91-153 385-429 (454)
328 COG2247 LytB Putative cell wal 35.0 39 0.00084 30.2 3.0 47 2-53 94-144 (337)
329 PRK15108 biotin synthase; Prov 34.8 3.2E+02 0.0069 24.0 11.7 148 2-169 140-309 (345)
330 PTZ00314 inosine-5'-monophosph 34.6 3.8E+02 0.0083 24.9 10.6 33 124-157 344-377 (495)
331 PRK01008 queuine tRNA-ribosylt 34.4 2.3E+02 0.0051 25.5 7.9 44 126-170 198-250 (372)
332 COG0324 MiaA tRNA delta(2)-iso 34.1 29 0.00062 30.6 2.0 86 44-137 5-106 (308)
333 TIGR01689 EcbF-BcbF capsule bi 34.1 1.4E+02 0.0031 22.6 5.7 48 8-56 7-55 (126)
334 PRK01424 S-adenosylmethionine: 33.9 33 0.00072 31.0 2.4 32 16-52 248-279 (366)
335 cd02069 methionine_synthase_B1 33.9 81 0.0018 25.9 4.6 45 97-150 151-198 (213)
336 PF12682 Flavodoxin_4: Flavodo 33.8 8.5 0.00018 30.1 -1.2 113 26-155 12-142 (156)
337 PRK05567 inosine 5'-monophosph 33.7 2.7E+02 0.0059 25.6 8.5 120 1-155 233-362 (486)
338 smart00796 AHS1 Allophanate hy 33.6 87 0.0019 25.6 4.7 61 77-148 48-113 (201)
339 PF02449 Glyco_hydro_42: Beta- 33.3 34 0.00074 30.0 2.4 45 2-50 17-69 (374)
340 PF02044 Bombesin: Bombesin-li 33.2 11 0.00024 18.2 -0.4 7 87-93 2-8 (14)
341 COG2022 ThiG Uncharacterized e 32.6 76 0.0016 27.3 4.2 104 19-157 109-215 (262)
342 PRK10878 hypothetical protein; 32.3 46 0.001 23.1 2.5 25 88-113 40-64 (72)
343 TIGR01232 lacD tagatose 1,6-di 32.3 68 0.0015 28.6 4.1 38 122-159 239-282 (325)
344 TIGR00449 tgt_general tRNA-gua 32.3 2.6E+02 0.0056 25.0 7.8 29 141-169 198-229 (367)
345 PRK12412 pyridoxal kinase; Rev 32.2 92 0.002 25.9 4.8 42 60-112 56-97 (268)
346 COG3588 Fructose-1,6-bisphosph 32.0 2.2E+02 0.0048 25.3 7.1 103 28-144 158-274 (332)
347 KOG1552 Predicted alpha/beta h 31.9 1.2E+02 0.0026 26.2 5.4 100 40-155 59-161 (258)
348 COG1027 AspA Aspartate ammonia 31.8 43 0.00094 30.9 2.8 25 89-113 231-255 (471)
349 COG0800 Eda 2-keto-3-deoxy-6-p 31.4 63 0.0014 27.0 3.5 34 123-157 152-185 (211)
350 TIGR02129 hisA_euk phosphoribo 31.3 96 0.0021 26.5 4.7 35 123-157 200-236 (253)
351 cd02871 GH18_chitinase_D-like 31.2 3.4E+02 0.0073 23.3 9.0 83 25-112 57-141 (312)
352 cd07942 DRE_TIM_LeuA Mycobacte 31.2 1.5E+02 0.0032 25.6 6.0 69 1-73 29-127 (284)
353 PRK06015 keto-hydroxyglutarate 31.0 1.3E+02 0.0028 24.8 5.3 45 123-169 143-194 (201)
354 KOG0503 Asparaginase [Amino ac 30.8 71 0.0015 28.9 4.0 36 122-158 252-291 (368)
355 PF02579 Nitro_FeMo-Co: Dinitr 30.8 47 0.001 22.6 2.4 39 2-52 47-85 (94)
356 PRK13347 coproporphyrinogen II 30.7 4.1E+02 0.0089 24.1 11.3 105 2-116 156-279 (453)
357 COG4843 Uncharacterized protei 30.5 53 0.0011 26.1 2.8 25 67-92 141-165 (179)
358 TIGR01305 GMP_reduct_1 guanosi 30.5 1.2E+02 0.0026 27.3 5.3 45 99-153 134-178 (343)
359 COG0352 ThiE Thiamine monophos 30.5 2E+02 0.0044 23.8 6.4 69 78-158 123-191 (211)
360 COG2185 Sbm Methylmalonyl-CoA 30.2 2.1E+02 0.0045 22.5 6.1 47 124-170 40-89 (143)
361 PRK13813 orotidine 5'-phosphat 30.1 2.8E+02 0.0061 22.0 12.3 131 2-167 74-207 (215)
362 cd03174 DRE_TIM_metallolyase D 29.7 3E+02 0.0066 22.2 9.4 19 2-20 26-44 (265)
363 TIGR01508 rib_reduct_arch 2,5- 29.7 76 0.0017 25.7 3.8 33 130-162 120-153 (210)
364 KOG2333 Uncharacterized conser 29.6 90 0.0019 29.7 4.5 42 125-166 455-500 (614)
365 cd06412 GH25_CH-type CH-type ( 29.5 2.9E+02 0.0063 22.0 12.0 110 3-132 17-137 (199)
366 COG0351 ThiD Hydroxymethylpyri 29.3 98 0.0021 26.7 4.5 43 59-112 55-97 (263)
367 cd02070 corrinoid_protein_B12- 29.3 89 0.0019 25.1 4.1 46 96-151 144-189 (201)
368 PHA00432 internal virion prote 29.3 29 0.00063 27.1 1.1 27 87-113 58-86 (137)
369 PRK08318 dihydropyrimidine deh 29.1 1.8E+02 0.004 26.0 6.4 44 124-168 253-300 (420)
370 PRK13957 indole-3-glycerol-pho 29.0 3.6E+02 0.0079 22.9 10.8 114 5-158 121-235 (247)
371 cd00381 IMPDH IMPDH: The catal 29.0 3.9E+02 0.0084 23.3 10.3 33 124-157 197-230 (325)
372 cd02809 alpha_hydroxyacid_oxid 28.9 71 0.0015 27.3 3.6 34 124-158 227-261 (299)
373 PRK13210 putative L-xylulose 5 28.8 2.5E+02 0.0054 23.0 6.8 77 28-108 94-171 (284)
374 PRK09243 nicotinate phosphorib 28.8 97 0.0021 28.7 4.7 58 97-158 263-321 (464)
375 TIGR02494 PFLE_PFLC glycyl-rad 28.4 1.7E+02 0.0037 24.5 5.8 57 91-159 132-189 (295)
376 KOG0926 DEAH-box RNA helicase 28.2 99 0.0022 31.4 4.7 101 32-153 262-362 (1172)
377 KOG2334 tRNA-dihydrouridine sy 28.2 37 0.0008 31.5 1.8 51 95-158 193-247 (477)
378 TIGR02708 L_lactate_ox L-lacta 27.9 66 0.0014 29.0 3.3 35 123-158 282-317 (367)
379 PRK10343 RNA-binding protein Y 27.8 1.1E+02 0.0024 22.4 3.9 81 32-132 8-88 (97)
380 cd01020 TroA_b Metal binding p 27.7 3.6E+02 0.0078 22.4 9.5 77 80-167 154-254 (264)
381 TIGR00381 cdhD CO dehydrogenas 27.6 1.5E+02 0.0032 27.1 5.5 64 97-170 171-238 (389)
382 COG0803 LraI ABC-type metal io 27.5 3.9E+02 0.0086 22.8 8.4 68 67-146 181-264 (303)
383 PRK05458 guanosine 5'-monophos 27.5 1.6E+02 0.0034 26.1 5.6 46 98-153 123-168 (326)
384 PRK05096 guanosine 5'-monophos 27.4 1.4E+02 0.003 26.9 5.2 45 99-153 135-179 (346)
385 PRK08898 coproporphyrinogen II 27.4 2.2E+02 0.0048 25.3 6.6 94 60-165 54-151 (394)
386 PLN02363 phosphoribosylanthran 27.4 49 0.0011 28.2 2.3 28 125-152 200-227 (256)
387 PF12083 DUF3560: Domain of un 27.3 21 0.00046 27.4 0.1 9 12-20 45-54 (126)
388 PRK06267 hypothetical protein; 27.3 4.3E+02 0.0093 23.2 10.5 121 12-154 135-270 (350)
389 TIGR00542 hxl6Piso_put hexulos 27.1 3.6E+02 0.0078 22.2 7.9 84 3-88 60-154 (279)
390 TIGR01618 phage_P_loop phage n 27.0 70 0.0015 26.6 3.1 44 3-47 128-178 (220)
391 KOG1282 Serine carboxypeptidas 26.9 1.4E+02 0.0031 27.7 5.4 77 79-159 118-215 (454)
392 PF03328 HpcH_HpaI: HpcH/HpaI 26.8 42 0.0009 27.2 1.7 61 95-157 92-154 (221)
393 cd00381 IMPDH IMPDH: The catal 26.7 1.8E+02 0.0038 25.4 5.7 44 100-153 120-163 (325)
394 PRK07226 fructose-bisphosphate 26.7 1.5E+02 0.0032 24.9 5.1 34 124-158 196-236 (267)
395 PLN02840 tRNA dimethylallyltra 26.7 2.8E+02 0.0061 25.5 7.2 48 42-97 21-69 (421)
396 PF11918 DUF3436: Domain of un 26.6 43 0.00093 22.3 1.4 13 78-90 14-26 (55)
397 COG2730 BglC Endoglucanase [Ca 26.6 4.5E+02 0.0098 23.5 8.5 80 29-113 117-215 (407)
398 cd02905 Macro_GDAP2_like Macro 26.4 2E+02 0.0044 21.9 5.4 49 61-112 89-139 (140)
399 PRK14072 6-phosphofructokinase 26.3 1.2E+02 0.0025 27.8 4.6 43 11-54 72-116 (416)
400 TIGR01304 IMP_DH_rel_2 IMP deh 26.3 1.1E+02 0.0025 27.4 4.5 55 98-157 233-288 (369)
401 TIGR03471 HpnJ hopanoid biosyn 26.0 1.9E+02 0.0042 26.2 6.1 53 2-54 291-354 (472)
402 PF08915 tRNA-Thr_ED: Archaea- 25.9 3.2E+02 0.007 21.3 6.8 71 40-115 36-106 (138)
403 PF02682 AHS1: Allophanate hyd 25.8 46 0.001 27.2 1.8 57 78-145 49-109 (202)
404 PF01183 Glyco_hydro_25: Glyco 25.7 3.1E+02 0.0068 21.1 10.0 111 3-132 14-129 (181)
405 COG1519 KdtA 3-deoxy-D-manno-o 25.6 3E+02 0.0066 25.4 7.1 96 3-112 141-257 (419)
406 cd00841 MPP_YfcE Escherichia c 25.5 48 0.001 24.7 1.8 21 3-23 97-117 (155)
407 PLN02746 hydroxymethylglutaryl 25.5 2.4E+02 0.0053 25.1 6.5 72 2-73 75-169 (347)
408 PRK10530 pyridoxal phosphate ( 25.3 2.8E+02 0.0061 22.4 6.5 41 7-53 8-48 (272)
409 COG2049 DUR1 Allophanate hydro 25.1 91 0.002 26.3 3.4 59 77-143 46-105 (223)
410 KOG0831 Acyl-CoA:diacylglycero 25.0 2.1E+02 0.0045 25.7 5.8 91 34-130 210-324 (334)
411 TIGR03249 KdgD 5-dehydro-4-deo 24.9 1.8E+02 0.0039 24.7 5.4 53 92-152 50-105 (296)
412 COG0159 TrpA Tryptophan syntha 24.7 2.2E+02 0.0047 24.7 5.7 120 30-168 4-146 (265)
413 TIGR00683 nanA N-acetylneurami 24.5 4.4E+02 0.0095 22.4 12.6 124 3-152 29-163 (290)
414 cd00408 DHDPS-like Dihydrodipi 24.4 4.1E+02 0.0089 22.0 12.2 139 2-168 25-173 (281)
415 TIGR00238 KamA family protein. 24.4 1E+02 0.0022 26.9 3.8 98 2-113 214-317 (331)
416 TIGR01579 MiaB-like-C MiaB-lik 24.4 2.4E+02 0.0053 25.0 6.3 57 103-167 50-106 (414)
417 TIGR00065 ftsZ cell division p 24.3 2.9E+02 0.0063 24.5 6.7 91 32-136 217-310 (349)
418 cd07939 DRE_TIM_NifV Streptomy 24.2 4.1E+02 0.009 22.0 8.2 16 2-17 27-42 (259)
419 TIGR00253 RNA_bind_YhbY putati 24.2 1.5E+02 0.0033 21.5 4.1 81 32-132 6-86 (95)
420 PLN03016 sinapoylglucose-malat 24.2 2E+02 0.0043 26.3 5.8 61 99-160 142-213 (433)
421 PF03129 HGTP_anticodon: Antic 24.1 27 0.00059 24.0 0.1 28 26-53 37-64 (94)
422 PF14871 GHL6: Hypothetical gl 24.0 1.4E+02 0.0029 22.8 4.0 46 2-49 7-67 (132)
423 cd00954 NAL N-Acetylneuraminic 24.0 4.4E+02 0.0095 22.2 12.4 138 3-167 29-177 (288)
424 PRK00147 queA S-adenosylmethio 24.0 69 0.0015 28.7 2.7 32 16-52 226-257 (342)
425 PRK08057 cobalt-precorrin-6x r 23.8 1.4E+02 0.0031 25.2 4.5 36 3-46 185-220 (248)
426 PTZ00372 endonuclease 4-like p 23.8 5.7E+02 0.012 23.5 8.8 79 29-110 219-298 (413)
427 cd02069 methionine_synthase_B1 23.7 2E+02 0.0044 23.5 5.3 48 123-170 115-165 (213)
428 cd01989 STK_N The N-terminal d 23.5 2E+02 0.0043 20.8 4.8 34 124-158 82-115 (146)
429 PF02679 ComA: (2R)-phospho-3- 23.5 75 0.0016 27.1 2.7 68 2-73 91-158 (244)
430 TIGR00430 Q_tRNA_tgt tRNA-guan 23.2 4.7E+02 0.01 23.4 7.9 38 131-169 186-230 (368)
431 PF05677 DUF818: Chlamydia CHL 23.1 2.9E+02 0.0064 25.0 6.4 62 93-156 186-253 (365)
432 TIGR00113 queA S-adenosylmethi 23.0 74 0.0016 28.5 2.7 32 16-52 227-258 (344)
433 PRK04169 geranylgeranylglycery 22.9 1.2E+02 0.0027 25.5 3.9 29 140-168 26-56 (232)
434 PF02873 MurB_C: UDP-N-acetyle 22.9 1.2E+02 0.0026 22.3 3.4 33 96-128 72-104 (105)
435 cd01815 BMSC_UbP_N Ubiquitin-l 22.8 79 0.0017 22.1 2.3 16 122-137 41-56 (75)
436 cd01808 hPLIC_N Ubiquitin-like 22.7 64 0.0014 21.3 1.8 31 106-137 22-52 (71)
437 PRK13397 3-deoxy-7-phosphohept 22.7 1.8E+02 0.0038 24.9 4.8 46 124-169 184-248 (250)
438 KOG3363 Uncharacterized conser 22.7 2.1E+02 0.0045 23.4 4.9 94 43-158 77-171 (196)
439 cd00945 Aldolase_Class_I Class 22.5 3.5E+02 0.0075 20.4 12.5 135 2-168 20-169 (201)
440 cd02875 GH18_chitobiase Chitob 22.4 5.4E+02 0.012 22.6 8.9 87 22-115 61-147 (358)
441 cd01791 Ubl5 UBL5 ubiquitin-li 22.4 83 0.0018 21.4 2.3 31 106-137 24-54 (73)
442 PRK06801 hypothetical protein; 22.4 3.3E+02 0.0071 23.6 6.5 133 5-158 94-238 (286)
443 cd05400 NT_2-5OAS_ClassI-CCAas 22.3 2.6E+02 0.0057 20.5 5.3 56 99-156 2-57 (143)
444 cd01794 DC_UbP_C dendritic cel 22.2 57 0.0012 21.9 1.4 32 105-137 20-51 (70)
445 cd01798 parkin_N amino-termina 22.1 68 0.0015 21.0 1.8 32 105-137 20-51 (70)
446 cd00578 L-fuc_L-ara-isomerases 21.8 3.2E+02 0.0069 24.7 6.6 71 89-166 4-85 (452)
447 PF08410 DUF1737: Domain of un 21.7 1.2E+02 0.0025 20.0 2.8 26 20-45 7-32 (54)
448 TIGR02493 PFLA pyruvate format 21.7 3.9E+02 0.0084 21.3 6.5 60 94-164 74-137 (235)
449 PRK06843 inosine 5-monophospha 21.5 1.7E+02 0.0036 26.8 4.7 45 99-153 178-222 (404)
450 PRK05660 HemN family oxidoredu 21.4 2.1E+02 0.0046 25.3 5.3 65 91-160 64-131 (378)
451 cd07940 DRE_TIM_IPMS 2-isoprop 21.4 4.8E+02 0.01 21.7 10.0 17 2-18 27-43 (268)
452 COG1874 LacA Beta-galactosidas 21.4 2.7E+02 0.0058 27.3 6.2 102 2-113 37-145 (673)
453 TIGR00539 hemN_rel putative ox 21.2 4E+02 0.0087 23.2 6.9 65 91-160 57-124 (360)
454 cd03330 Macro_2 Macro domain, 21.1 2.8E+02 0.0061 20.4 5.2 13 12-24 16-28 (133)
455 PRK14333 (dimethylallyl)adenos 21.1 4.4E+02 0.0094 23.9 7.3 61 103-168 60-121 (448)
456 TIGR01379 thiL thiamine-monoph 20.9 2.4E+02 0.0051 24.1 5.4 43 97-153 92-134 (317)
457 PRK07114 keto-hydroxyglutarate 20.9 1.2E+02 0.0026 25.3 3.4 45 123-168 157-209 (222)
458 PF09587 PGA_cap: Bacterial ca 20.6 4.8E+02 0.01 21.3 11.4 47 2-54 69-117 (250)
459 cd01169 HMPP_kinase 4-amino-5- 20.6 2.1E+02 0.0046 22.8 4.8 42 60-112 52-93 (242)
460 PRK11177 phosphoenolpyruvate-p 20.6 2.8E+02 0.0061 26.4 6.2 86 59-157 365-456 (575)
461 TIGR01182 eda Entner-Doudoroff 20.5 1.1E+02 0.0023 25.3 3.0 46 123-169 147-198 (204)
462 cd01814 NTGP5 Ubiquitin-like N 20.4 98 0.0021 23.5 2.5 35 103-137 25-65 (113)
463 cd02192 PurM-like3 AIR synthas 20.3 2.3E+02 0.0049 24.1 5.0 44 97-153 96-139 (283)
464 TIGR02370 pyl_corrinoid methyl 20.3 1.6E+02 0.0034 23.7 3.9 51 90-150 140-190 (197)
465 PRK05904 coproporphyrinogen II 20.2 2.9E+02 0.0062 24.4 5.8 64 91-161 62-128 (353)
466 COG1217 TypA Predicted membran 20.2 1.5E+02 0.0034 28.2 4.2 40 34-76 113-152 (603)
467 COG0809 QueA S-adenosylmethion 20.1 1.1E+02 0.0023 27.6 3.1 32 16-52 228-259 (348)
No 1
>PRK14567 triosephosphate isomerase; Provisional
Probab=100.00 E-value=7.9e-67 Score=440.04 Aligned_cols=170 Identities=43% Similarity=0.697 Sum_probs=162.8
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+||+..|++++. +
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~ 157 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQL 157 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998764 6
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++++|||||+||||||++|+|++|+++|.+||+++++ ++..+++++||||||||+++|+.++++++++||+|||||||+
T Consensus 158 ~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~-~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~ 236 (253)
T PRK14567 158 AKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLK 236 (253)
T ss_pred CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-hcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhc
Confidence 8999999999999999999999999999999999988 677778899999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHhhh
Q 039862 159 PE-FIDIIKSATVK 171 (173)
Q Consensus 159 ~~-f~~Ii~~~~~~ 171 (173)
++ |++|++.+++-
T Consensus 237 ~~~F~~Ii~~~~~~ 250 (253)
T PRK14567 237 AAEFNEIINQANKI 250 (253)
T ss_pred HHHHHHHHHHHHhh
Confidence 76 99999988763
No 2
>PRK14566 triosephosphate isomerase; Provisional
Probab=100.00 E-value=2.2e-66 Score=438.67 Aligned_cols=167 Identities=48% Similarity=0.759 Sum_probs=159.5
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|+|++|++|+++|+++||+||+||||++++|++|++.+++.+||+..|+++.. +
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~ 167 (260)
T PRK14566 88 GQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAF 167 (260)
T ss_pred HHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999985432 6
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++++|||||+||||||++|+|++++++|.+||+++++. +...++++||||||||+++|+.+++++++|||+|||||||+
T Consensus 168 ~~ivIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgASL~ 246 (260)
T PRK14566 168 DNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEV-SPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLN 246 (260)
T ss_pred CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhc-CccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHhcC
Confidence 89999999999999999999999999999999999987 77778899999999999999999999999999999999999
Q ss_pred hH-HHHHHHHH
Q 039862 159 PE-FIDIIKSA 168 (173)
Q Consensus 159 ~~-f~~Ii~~~ 168 (173)
++ |.+|++.+
T Consensus 247 ~~~F~~Ii~~~ 257 (260)
T PRK14566 247 STEFLSLCTIA 257 (260)
T ss_pred HHHHHHHHHHh
Confidence 86 99999864
No 3
>PLN02561 triosephosphate isomerase
Probab=100.00 E-value=3.5e-66 Score=436.32 Aligned_cols=172 Identities=90% Similarity=1.321 Sum_probs=165.8
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
|+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+|++.++..++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~ 160 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWAN 160 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998876688
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChH
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
++|||||+||||||++|+|++++++|++||+++.+.|+..+++++||||||||+++|+.+++.++|+||+|||||||+++
T Consensus 161 iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~~~ 240 (253)
T PLN02561 161 VVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLKPE 240 (253)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhHHH
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhc
Q 039862 161 FIDIIKSATVKK 172 (173)
Q Consensus 161 f~~Ii~~~~~~~ 172 (173)
|++|++....+|
T Consensus 241 F~~ii~~~~~~~ 252 (253)
T PLN02561 241 FIDIIKSATVKK 252 (253)
T ss_pred HHHHHHhhhhcC
Confidence 999999876665
No 4
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=100.00 E-value=1.4e-66 Score=436.81 Aligned_cols=165 Identities=56% Similarity=0.881 Sum_probs=156.9
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|+.+++.+++.+||+.+|++++. +
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~ 156 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEEL 156 (244)
T ss_dssp HHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGG
T ss_pred HHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999875 6
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++++|||||+||||||++|+|++++++|++||+++++.|+...++++||||||||+++|+.++++++++||+|||+|||+
T Consensus 157 ~~~iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~ 236 (244)
T PF00121_consen 157 KNIIIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLK 236 (244)
T ss_dssp TCEEEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGS
T ss_pred cceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhc
Confidence 89999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred hH-HHHHH
Q 039862 159 PE-FIDII 165 (173)
Q Consensus 159 ~~-f~~Ii 165 (173)
++ |.+||
T Consensus 237 ~~~F~~Ii 244 (244)
T PF00121_consen 237 AESFLEII 244 (244)
T ss_dssp THHHHHHH
T ss_pred ccchhhcC
Confidence 76 99997
No 5
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=7.8e-66 Score=433.63 Aligned_cols=168 Identities=58% Similarity=0.871 Sum_probs=161.6
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|++.+++.+||..+|++++. +
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~ 158 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQF 158 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998764 6
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++++|||||+||||||++|||++++++|++||+++++.|+ ..++++||||||||+++|+.+++.++++||+|||||||+
T Consensus 159 ~~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~ 237 (250)
T PRK00042 159 ANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLK 237 (250)
T ss_pred CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 8999999999999999999999999999999999999998 778899999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHh
Q 039862 159 PE-FIDIIKSAT 169 (173)
Q Consensus 159 ~~-f~~Ii~~~~ 169 (173)
++ |.+|++.+.
T Consensus 238 ~~~f~~ii~~~~ 249 (250)
T PRK00042 238 AEDFLAIVKAAA 249 (250)
T ss_pred hHHHHHHHHHhh
Confidence 76 999998753
No 6
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=8.4e-66 Score=431.66 Aligned_cols=165 Identities=58% Similarity=0.862 Sum_probs=159.5
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
|+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|++.+++.+|+...+++++.+++
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~ 156 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP 156 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998866889
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChH
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
++|||||+||||||++|+|++++++|++||+++++.++. .++++||||||||+++|+.++++++++||+|||||||+++
T Consensus 157 ~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~-~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~ 235 (242)
T cd00311 157 VVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGE-VAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE 235 (242)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhccc-ccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHH
Confidence 999999999999999999999999999999999999987 7889999999999999999999999999999999999976
Q ss_pred -HHHHHH
Q 039862 161 -FIDIIK 166 (173)
Q Consensus 161 -f~~Ii~ 166 (173)
|.+|++
T Consensus 236 ~f~~Ii~ 242 (242)
T cd00311 236 SFLDIIK 242 (242)
T ss_pred HHHHHhC
Confidence 999974
No 7
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.3e-65 Score=433.45 Aligned_cols=170 Identities=68% Similarity=1.102 Sum_probs=164.1
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+|+..+++.++. .
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~ 161 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAW 161 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998864 6
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+++|||||+||||||++|+||+|+++|++||+.+++.|+...++++||||||||+++|+.+++.++++||+|||||||+
T Consensus 162 ~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~ 241 (255)
T PTZ00333 162 DNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK 241 (255)
T ss_pred ceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh
Confidence 89999999999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh
Q 039862 159 PEFIDIIKSATV 170 (173)
Q Consensus 159 ~~f~~Ii~~~~~ 170 (173)
++|++|++.+++
T Consensus 242 ~~f~~Ii~~~~~ 253 (255)
T PTZ00333 242 PDFVDIIKSAEQ 253 (255)
T ss_pred hhHHHHHHHHhh
Confidence 889999998765
No 8
>PRK15492 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.8e-65 Score=433.59 Aligned_cols=169 Identities=35% Similarity=0.568 Sum_probs=161.5
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|+.|++.+++.+||+..|++++. +
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~~~~ 166 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQL 166 (260)
T ss_pred HHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCHhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998864 6
Q ss_pred CCeEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 79 DNVVLAYEPVWAIGT-GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 79 ~~iiIAYEPvwAIGt-G~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
++++|||||+||||| |++|+|++++++|++||+++.+.|+.. ++++|||||||||++|+.+++++++|||+|||||||
T Consensus 167 ~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~-~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl 245 (260)
T PRK15492 167 AKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDA-GDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAW 245 (260)
T ss_pred CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhhc
Confidence 899999999999998 999999999999999999999999866 788999999999999999999999999999999999
Q ss_pred ChH-HHHHHHHHhh
Q 039862 158 KPE-FIDIIKSATV 170 (173)
Q Consensus 158 ~~~-f~~Ii~~~~~ 170 (173)
+++ |.+|++.+.+
T Consensus 246 ~~~~F~~Ii~~~~~ 259 (260)
T PRK15492 246 DADKFFAIIEGILN 259 (260)
T ss_pred CHHHHHHHHHHHhc
Confidence 976 9999987653
No 9
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-65 Score=417.86 Aligned_cols=168 Identities=71% Similarity=1.165 Sum_probs=164.6
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
|+||+|+|++|||+||||||++|+|+|+.|.+|++.|++.||..|.||||++++|++|+|.+++.+||..+.+.+..+++
T Consensus 79 ~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~n 158 (247)
T KOG1643|consen 79 AEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSN 158 (247)
T ss_pred HHHHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChH
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
++|||||+||||||++|+|+++|++|..||+|+++..+..++...||+||||||..|++++.+.++|||+|||||||+|+
T Consensus 159 iviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~el~~~~diDGFLVGGaSLKpe 238 (247)
T KOG1643|consen 159 IVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKELAKKPDIDGFLVGGASLKPE 238 (247)
T ss_pred eEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEeccccccccHHHhcccccccceEEcCcccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 039862 161 FIDIIKSA 168 (173)
Q Consensus 161 f~~Ii~~~ 168 (173)
|..|++..
T Consensus 239 F~~Iin~~ 246 (247)
T KOG1643|consen 239 FVDIINAR 246 (247)
T ss_pred HHHhhhcc
Confidence 99999863
No 10
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-65 Score=427.21 Aligned_cols=169 Identities=51% Similarity=0.805 Sum_probs=162.6
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
|+||+|+|++||||||||||.+|+|+|++|++|+++|+++||+||+||||++++|++|+|.+++.+|+...+..++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~ 160 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEAN 160 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999886678
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP- 159 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~- 159 (173)
++|||||+||||||+++|+++++++|.+||.++.+.|+.+ ..+|||||||||++|+++++.++++||+|||||||++
T Consensus 161 ~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~--~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~ 238 (251)
T COG0149 161 IVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE--EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD 238 (251)
T ss_pred eEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecch
Confidence 9999999999999999999999999999999999999876 8999999999999999999999999999999999996
Q ss_pred HHHHHHHHHhhh
Q 039862 160 EFIDIIKSATVK 171 (173)
Q Consensus 160 ~f~~Ii~~~~~~ 171 (173)
+|..|++.+.+.
T Consensus 239 ~f~~ii~~~~~~ 250 (251)
T COG0149 239 DFLAILEALAKA 250 (251)
T ss_pred hHHHHHHHHhhc
Confidence 599999987653
No 11
>PLN02429 triosephosphate isomerase
Probab=100.00 E-value=1.3e-64 Score=437.07 Aligned_cols=171 Identities=63% Similarity=1.029 Sum_probs=165.0
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
|+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|++.+++.+|++.+++.++.+++
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ 219 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN 219 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChH
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
++|||||+||||||++|+|++++++|++||+++++.|+.++++++||||||||+++|+.+++.++|+||+|||||||+++
T Consensus 220 ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~ 299 (315)
T PLN02429 220 IVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGP 299 (315)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999965
Q ss_pred -HHHHHHHHhhh
Q 039862 161 -FIDIIKSATVK 171 (173)
Q Consensus 161 -f~~Ii~~~~~~ 171 (173)
|.+|++....+
T Consensus 300 ~F~~Ii~~~~~~ 311 (315)
T PLN02429 300 EFATIVNSVTSK 311 (315)
T ss_pred HHHHHHHHHHhh
Confidence 99999987654
No 12
>PRK14565 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4e-62 Score=408.23 Aligned_cols=157 Identities=41% Similarity=0.654 Sum_probs=149.4
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
|+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|+.+++.+++.+|++..+.+ .++
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~---~~~ 154 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPK---HGE 154 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcC---CCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999875 358
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChH
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
++|||||+||||||++|+||+|+++|++||++ ..++||||||||+++|+.++++++++||+|||||||+++
T Consensus 155 ivIAYEPvWAIGtG~~a~~e~i~~~~~~Ir~~---------~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~ 225 (237)
T PRK14565 155 FIIAYEPVWAIGGSTIPSNDAIAEAFEIIRSY---------DSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVD 225 (237)
T ss_pred EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHh---------CCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHH
Confidence 99999999999999999999999999999997 246999999999999999999999999999999999976
Q ss_pred -HHHHHHHHh
Q 039862 161 -FIDIIKSAT 169 (173)
Q Consensus 161 -f~~Ii~~~~ 169 (173)
|.+|++.+.
T Consensus 226 ~f~~ii~~~~ 235 (237)
T PRK14565 226 SFCKIIQQVE 235 (237)
T ss_pred HHHHHHHHHh
Confidence 999998753
No 13
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=2.8e-62 Score=454.72 Aligned_cols=168 Identities=53% Similarity=0.783 Sum_probs=162.2
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|++.+++.+||+.+|++++. +
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~ 553 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV 553 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998864 6
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++++|||||+||||||++|+|++++++|++||+++++.|+...++++||||||||||+|+.+++++++|||+|||||||+
T Consensus 554 ~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~ 633 (645)
T PRK13962 554 KKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASLK 633 (645)
T ss_pred CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehHhcC
Confidence 89999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHH
Q 039862 159 PE-FIDIIKSA 168 (173)
Q Consensus 159 ~~-f~~Ii~~~ 168 (173)
++ |++|++..
T Consensus 634 ~~~F~~Ii~~~ 644 (645)
T PRK13962 634 AQEFAAIANYF 644 (645)
T ss_pred HHHHHHHHHhh
Confidence 76 99999753
No 14
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=100.00 E-value=5.8e-62 Score=427.38 Aligned_cols=169 Identities=37% Similarity=0.591 Sum_probs=161.2
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC--C
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--W 78 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~--~ 78 (173)
|+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|++.+++.+||+..|++++. +
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~~ 167 (355)
T PRK14905 88 PLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQL 167 (355)
T ss_pred HHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999988753 7
Q ss_pred CCeEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 79 DNVVLAYEPVWAIGT-GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 79 ~~iiIAYEPvwAIGt-G~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.+++|||||+||||| |++|+|++++++|++||+++.+.|+.. +.++||||||||+++|+.+++.++++||+|||||||
T Consensus 168 ~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~-~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl 246 (355)
T PRK14905 168 PHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE-SKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAW 246 (355)
T ss_pred CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhc
Confidence 899999999999998 799999999999999999999998866 778999999999999999999999999999999999
Q ss_pred ChH-HHHHHHHHhh
Q 039862 158 KPE-FIDIIKSATV 170 (173)
Q Consensus 158 ~~~-f~~Ii~~~~~ 170 (173)
+++ |.+|++...+
T Consensus 247 ~~~~f~~Ii~~~~~ 260 (355)
T PRK14905 247 DAQCFHALIADALK 260 (355)
T ss_pred cHHHHHHHHHHHHH
Confidence 976 9999988755
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=100.00 E-value=3.2e-53 Score=348.05 Aligned_cols=131 Identities=34% Similarity=0.496 Sum_probs=118.6
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
|+||+|+||+|||||||||| |+|+| |++|+++|+++||+||+|| +++.+|+... .+++
T Consensus 74 ~~mLkd~G~~~viiGHSERR--f~Etd--i~~Kv~~a~~~gl~~IvCi-------------~~v~~q~~~~-----~~~~ 131 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR--MKLAD--IEKKIARLKELGLTSVVCT-------------NNVLTTAAAA-----ALEP 131 (205)
T ss_pred HHHHHHcCCCEEEECcccCC--CCccH--HHHHHHHHHHCCCEEEEEE-------------HHHHHHHHhh-----hhcC
Confidence 57999999999999999999 99999 9999999999999999999 2344555432 2579
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
++|||||+||||||++|||++++++|++|| ++...++++||||||||+++|+.+++.++++||+|||||||++
T Consensus 132 ~vIAYEPvWAIGtG~~as~~~~~~v~~~ir------~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 132 DVVAVEPPELIGTGIPVSPAQPEVVHGSVR------AVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHH------hhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 999999999999999999999999999999 3445578899999999999999999999999999999999986
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.98 E-value=6.9e-32 Score=222.53 Aligned_cols=139 Identities=22% Similarity=0.321 Sum_probs=120.1
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
++||+++|+++||+||||||..|+| +++|++.|+++||.||+|+++.. |+..+. ...+
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~~~--------------~~~~~~----~~~~ 135 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNNPE--------------TSAAAA----ALGP 135 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCCHH--------------HHHHHh----cCCC
Confidence 4689999999999999999998877 67889999999999999999942 333322 2456
Q ss_pred eEEEEcccccccCCCC---CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 81 VVLAYEPVWAIGTGKV---ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~---a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.+|+|||+|+||||.. ++|+.++++++.||+. ..++||+|||||++.|..+.+...++||+|||++++
T Consensus 136 ~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~---------~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l 206 (223)
T PRK04302 136 DYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV---------NPDVKVLCGAGISTGEDVKAALELGADGVLLASGVV 206 (223)
T ss_pred CEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc---------cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHh
Confidence 7999999999999976 8899999999999975 246999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHhh
Q 039862 158 KP-EFIDIIKSATV 170 (173)
Q Consensus 158 ~~-~f~~Ii~~~~~ 170 (173)
+. +|..+++.+..
T Consensus 207 ~~~~~~~~~~~~~~ 220 (223)
T PRK04302 207 KAKDPEAALRDLVS 220 (223)
T ss_pred CCcCHHHHHHHHHh
Confidence 95 49999987654
No 17
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.62 E-value=1.8e-07 Score=79.55 Aligned_cols=118 Identities=25% Similarity=0.296 Sum_probs=84.8
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEE-EeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIA-CVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIl-CvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
++++++|++.+|+- +.-+.|..+. +..+.++||.+|+ |.-.+.++|- +.+.+ ..+
T Consensus 111 ~~~~~aGvdGviip----DLp~ee~~~~----~~~~~~~gl~~I~lvap~t~~eri------------~~i~~----~s~ 166 (258)
T PRK13111 111 ADAAEAGVDGLIIP----DLPPEEAEEL----RAAAKKHGLDLIFLVAPTTTDERL------------KKIAS----HAS 166 (258)
T ss_pred HHHHHcCCcEEEEC----CCCHHHHHHH----HHHHHHcCCcEEEEeCCCCCHHHH------------HHHHH----hCC
Confidence 57899999999995 4455444443 6888999999998 7777755431 12221 334
Q ss_pred eEEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC
Q 039862 81 VVLAYEPVWAIG-TGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 81 iiIAYEPvwAIG-tG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
-+|.| +-.+| ||.. ..++.+.+.++.+|+. .++|++.|++| +++++.+++. ..||+.||++-+
T Consensus 167 gfIY~--vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGSaiv 232 (258)
T PRK13111 167 GFVYY--VSRAGVTGARSADAADLAELVARLKAH----------TDLPVAVGFGISTPEQAAAIAA--VADGVIVGSALV 232 (258)
T ss_pred CcEEE--EeCCCCCCcccCCCccHHHHHHHHHhc----------CCCcEEEEcccCCHHHHHHHHH--hCCEEEEcHHHH
Confidence 45666 45577 7764 4567778888888874 25999999999 6688888886 389999999843
No 18
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.37 E-value=5.1e-06 Score=72.88 Aligned_cols=130 Identities=16% Similarity=0.230 Sum_probs=92.7
Q ss_pred chhhc-CCCEEEE-cccccccccCCCHHHHHHHHHHHHHCCCeE-EEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCC
Q 039862 3 MLVNL-SIPWVIL-GHSERRALLNESNDFVGDKVAYALSRGLKV-IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD 79 (173)
Q Consensus 3 mLkd~-G~~~vii-GHSERR~~~~E~~~~i~~Kv~~al~~gl~p-IlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~ 79 (173)
|-+++ |.+|+=+ =|.|+|.++.+..+.+ ++.+...+.||.. ++|.......+ .+.. +.
T Consensus 158 lare~~~~~~iKlEvi~e~~~llpd~~~~v-~aa~~L~~~Gf~v~~yc~~d~~~a~---------------~l~~---~g 218 (326)
T PRK11840 158 LAREAGGWDLVKLEVLGDAKTLYPDMVETL-KATEILVKEGFQVMVYCSDDPIAAK---------------RLED---AG 218 (326)
T ss_pred HHHHhcCCCeEEEEEcCCCCCcccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH---------------HHHh---cC
Confidence 44554 3455422 2678998888877664 3444444559999 99999876543 2332 23
Q ss_pred CeEEEEcc-cccccCCCCC-CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 80 NVVLAYEP-VWAIGTGKVA-TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 80 ~iiIAYEP-vwAIGtG~~a-~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
. +|+|| .-.||||... +|+.++.+++. .++||+-|++|........+-+.|.||+|+.++-.
T Consensus 219 ~--~avmPl~~pIGsg~gv~~p~~i~~~~e~--------------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 219 A--VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred C--EEEeeccccccCCCCCCCHHHHHHHHHc--------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 4 89999 9999999985 67777765554 24999999999998888888889999999999887
Q ss_pred Ch-HHHHHHHH
Q 039862 158 KP-EFIDIIKS 167 (173)
Q Consensus 158 ~~-~f~~Ii~~ 167 (173)
++ +-..+.+.
T Consensus 283 ~a~dPv~Ma~A 293 (326)
T PRK11840 283 EAKNPVLMARA 293 (326)
T ss_pred cCCCHHHHHHH
Confidence 63 24444433
No 19
>PLN02591 tryptophan synthase
Probab=98.23 E-value=1.1e-05 Score=68.46 Aligned_cols=116 Identities=21% Similarity=0.312 Sum_probs=80.3
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH-HHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL-EQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~-~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
+.++++|++.+|+= ..-+.|..+. ...|.++||.+|+||--+. ++| ++.+.. ..+
T Consensus 100 ~~~~~aGv~Gviip----DLP~ee~~~~----~~~~~~~gl~~I~lv~Ptt~~~r------------i~~ia~----~~~ 155 (250)
T PLN02591 100 ATIKEAGVHGLVVP----DLPLEETEAL----RAEAAKNGIELVLLTTPTTPTER------------MKAIAE----ASE 155 (250)
T ss_pred HHHHHcCCCEEEeC----CCCHHHHHHH----HHHHHHcCCeEEEEeCCCCCHHH------------HHHHHH----hCC
Confidence 45789999999997 4455555544 6888999999999995543 333 222222 223
Q ss_pred eEEEEccccccc----CCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-cccHHHHhcCCCCCEEEeec
Q 039862 81 VVLAYEPVWAIG----TGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-GANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 81 iiIAYEPvwAIG----tG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~ 154 (173)
-+| +.|+ ||.. ..++.+.+.++.+|+. .++|++.|-+|+ ++++++++ ..|.||+.||+
T Consensus 156 gFI-----Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~Pv~vGFGI~~~e~v~~~~-~~GADGvIVGS 219 (250)
T PLN02591 156 GFV-----YLVSSTGVTGARASVSGRVESLLQELKEV----------TDKPVAVGFGISKPEHAKQIA-GWGADGVIVGS 219 (250)
T ss_pred CcE-----EEeeCCCCcCCCcCCchhHHHHHHHHHhc----------CCCceEEeCCCCCHHHHHHHH-hcCCCEEEECH
Confidence 333 3444 3433 3378888888888874 259999999999 66777654 47799999999
Q ss_pred ccC
Q 039862 155 ASL 157 (173)
Q Consensus 155 asl 157 (173)
+-+
T Consensus 220 alV 222 (250)
T PLN02591 220 AMV 222 (250)
T ss_pred HHH
Confidence 853
No 20
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.17 E-value=5.8e-05 Score=63.21 Aligned_cols=124 Identities=15% Similarity=0.227 Sum_probs=82.0
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+.++++|++++++ |. +.-|+.+....=++.+.++|+.+++|+.-+... +.++.+++..+ .=+
T Consensus 95 ~~~~~~Gadgvii-~d----lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~-----------e~l~~~~~~~~--~~l 156 (244)
T PRK13125 95 NMARDVGADGVLF-PD----LLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD-----------LLIHRLSKLSP--LFI 156 (244)
T ss_pred HHHHHcCCCEEEE-CC----CCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH-----------HHHHHHHHhCC--CEE
Confidence 4578999999999 41 112333334445788999999999999985421 22333443221 113
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++..+|.. |.. =++.+.+.++.+|+.. .+.+|..||+| +++|++.++. .+.||+++|++-++
T Consensus 157 ~msv~~~~----g~~-~~~~~~~~i~~lr~~~---------~~~~i~v~gGI~~~e~i~~~~~-~gaD~vvvGSai~~ 219 (244)
T PRK13125 157 YYGLRPAT----GVP-LPVSVERNIKRVRNLV---------GNKYLVVGFGLDSPEDARDALS-AGADGVVVGTAFIE 219 (244)
T ss_pred EEEeCCCC----CCC-chHHHHHHHHHHHHhc---------CCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 44777765 433 2555666677777652 23578999999 8888887765 88999999998653
No 21
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.09 E-value=0.00013 Score=58.49 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=78.9
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
++++++|++++.+ |.+-. +....-++.+.+.|+.+++=+..+. .. ++++......+
T Consensus 73 ~~~~~~gadgv~v-h~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~t-------~~----e~~~~~~~~~d----- 128 (210)
T TIGR01163 73 EDFAEAGADIITV-HPEAS-------EHIHRLLQLIKDLGAKAGIVLNPAT-------PL----EFLEYVLPDVD----- 128 (210)
T ss_pred HHHHHcCCCEEEE-ccCCc-------hhHHHHHHHHHHcCCcEEEEECCCC-------CH----HHHHHHHhhCC-----
Confidence 4677999999888 66431 2223445677778888877554321 11 12223322222
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.|.|=|++.-+||....+...+ .++.+|+.+.+. ...+|++-+|+|+++|+.+++ ..++||+-||++-..
T Consensus 129 ~i~~~~~~~g~tg~~~~~~~~~-~i~~i~~~~~~~-----~~~~~i~v~GGI~~env~~l~-~~gad~iivgsai~~ 198 (210)
T TIGR01163 129 LVLLMSVNPGFGGQKFIPDTLE-KIREVRKMIDEN-----GLSILIEVDGGVNDDNARELA-EAGADILVAGSAIFG 198 (210)
T ss_pred EEEEEEEcCCCCcccccHHHHH-HHHHHHHHHHhc-----CCCceEEEECCcCHHHHHHHH-HcCCCEEEEChHHhC
Confidence 2334455555677665565554 456666654321 224789999999999999988 589999999998775
No 22
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.90 E-value=0.0002 Score=60.82 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=72.0
Q ss_pred cccccCCCHHHHHHHHHHHHHCCCeEE-EEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEccc--ccccCCC
Q 039862 19 RRALLNESNDFVGDKVAYALSRGLKVI-ACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPV--WAIGTGK 95 (173)
Q Consensus 19 RR~~~~E~~~~i~~Kv~~al~~gl~pI-lCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPv--wAIGtG~ 95 (173)
-+.++.+..+.+ ++.+...+.||.++ +|..+....+ .|.. .....| |+ -.||||.
T Consensus 102 ~~~Llpd~~~tv-~aa~~L~~~Gf~vlpyc~dd~~~ar---------------~l~~---~G~~~v---mPlg~pIGsg~ 159 (248)
T cd04728 102 DKTLLPDPIETL-KAAEILVKEGFTVLPYCTDDPVLAK---------------RLED---AGCAAV---MPLGSPIGSGQ 159 (248)
T ss_pred ccccccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH---------------HHHH---cCCCEe---CCCCcCCCCCC
Confidence 445565555543 44444455599999 9999876543 2221 234455 99 6799998
Q ss_pred CC-CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 96 VA-TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 96 ~a-~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.. +|+.|+ .|++. .++||+.+|+|........+-+.|.||+|+|+|-.+
T Consensus 160 Gi~~~~~I~----~I~e~----------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 160 GLLNPYNLR----IIIER----------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCCCHHHHH----HHHHh----------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 75 566655 33332 248999999998877776777799999999999887
No 23
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.87 E-value=0.00043 Score=57.99 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=73.8
Q ss_pred cchhhcCCCEEEEc--ccccccccCCCHHHHHHHHHHHHHCCCeEEE-EeCCCHHHHhcCChHHHHHHHHHHHHhccCCC
Q 039862 2 EMLVNLSIPWVILG--HSERRALLNESNDFVGDKVAYALSRGLKVIA-CVGETLEQRESGSTVAVVAEQTKAIAEKISNW 78 (173)
Q Consensus 2 ~mLkd~G~~~viiG--HSERR~~~~E~~~~i~~Kv~~al~~gl~pIl-CvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~ 78 (173)
+.++++|++++++- |.| | ...=++.+.++|+.+++ |--.|..+| ++.+++. ..
T Consensus 98 ~~~~~aG~~giiipDl~~e------e----~~~~~~~~~~~g~~~i~~i~P~T~~~~------------i~~i~~~--~~ 153 (242)
T cd04724 98 RDAKEAGVDGLIIPDLPPE------E----AEEFREAAKEYGLDLIFLVAPTTPDER------------IKKIAEL--AS 153 (242)
T ss_pred HHHHHCCCcEEEECCCCHH------H----HHHHHHHHHHcCCcEEEEeCCCCCHHH------------HHHHHhh--CC
Confidence 46789999999983 333 2 22336888999999888 555553332 2223321 01
Q ss_pred CC-eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhcCCCCCEEEeeccc
Q 039862 79 DN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 79 ~~-iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~as 156 (173)
.- .+++..|+.-. .+.-++.+.+.++.+|+. .++||+.||+|+.. |++++... .||+.||++-
T Consensus 154 ~~vy~~s~~g~tG~---~~~~~~~~~~~i~~lr~~----------~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSai 218 (242)
T cd04724 154 GFIYYVSRTGVTGA---RTELPDDLKELIKRIRKY----------TDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSAL 218 (242)
T ss_pred CCEEEEeCCCCCCC---ccCCChhHHHHHHHHHhc----------CCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHH
Confidence 11 34566776432 222244556667777764 25999999999955 88887764 9999999874
No 24
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.86 E-value=0.00026 Score=60.20 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=70.4
Q ss_pred cccccCCCHHHHHHHHHHHHHCCCeEE-EEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEccc--ccccCCC
Q 039862 19 RRALLNESNDFVGDKVAYALSRGLKVI-ACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPV--WAIGTGK 95 (173)
Q Consensus 19 RR~~~~E~~~~i~~Kv~~al~~gl~pI-lCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPv--wAIGtG~ 95 (173)
.+..+.+..+.+ ++.+...+.||..+ +|..+....+ .+.. .....| |+ -.||||+
T Consensus 102 ~~~llpd~~~tv-~aa~~L~~~Gf~vlpyc~~d~~~ak---------------~l~~---~G~~~v---mPlg~pIGsg~ 159 (250)
T PRK00208 102 DKTLLPDPIETL-KAAEILVKEGFVVLPYCTDDPVLAK---------------RLEE---AGCAAV---MPLGAPIGSGL 159 (250)
T ss_pred CCCCCcCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH---------------HHHH---cCCCEe---CCCCcCCCCCC
Confidence 344455555442 44444455599999 9999876543 2221 344455 99 6799998
Q ss_pred CC-CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 96 VA-TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 96 ~a-~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.. +|+. ++.|++. .++||+.+|+|........+-+.|.||+|||+|-.+
T Consensus 160 gi~~~~~----i~~i~e~----------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 160 GLLNPYN----LRIIIEQ----------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CCCCHHH----HHHHHHh----------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 75 5555 3334432 248999999998777666666699999999999887
No 25
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.86 E-value=0.00082 Score=53.68 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=74.5
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeE
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVV 82 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ii 82 (173)
++.++|++++++ |-+ ..+....-++.+.+.|+.+.+=+..+.. . ++++...... -+
T Consensus 75 ~~~~~g~dgv~v-h~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~----~~~~~~~~~~-----d~ 130 (211)
T cd00429 75 AFAKAGADIITF-HAE-------ATDHLHRTIQLIKELGMKAGVALNPGTP-------V----EVLEPYLDEV-----DL 130 (211)
T ss_pred HHHHcCCCEEEE-Ccc-------chhhHHHHHHHHHHCCCeEEEEecCCCC-------H----HHHHHHHhhC-----CE
Confidence 456778888754 111 1122234467777888887776653211 1 1122222211 24
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 83 LAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 83 IAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
|.|=|++.-+||...++.. .+..+.+|+...++ ..++|++-+|+|+++|+.++.. .++||+.+|++-++
T Consensus 131 i~~~~~~~g~tg~~~~~~~-~~~i~~~~~~~~~~-----~~~~pi~v~GGI~~env~~~~~-~gad~iivgsai~~ 199 (211)
T cd00429 131 VLVMSVNPGFGGQKFIPEV-LEKIRKLRELIPEN-----NLNLLIEVDGGINLETIPLLAE-AGADVLVAGSALFG 199 (211)
T ss_pred EEEEEECCCCCCcccCHHH-HHHHHHHHHHHHhc-----CCCeEEEEECCCCHHHHHHHHH-cCCCEEEECHHHhC
Confidence 4444555455676554544 34566667664321 2348999999999999988775 78999999998776
No 26
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.79 E-value=0.00058 Score=55.68 Aligned_cols=119 Identities=12% Similarity=0.102 Sum_probs=75.7
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+.+.++|++.|++|.+-... +.+..=++.+...|+.+++++-...+ +..+.. +...
T Consensus 88 ~~~~~~Gad~v~l~~~~~~~------~~~~~~~~~~~~~g~~~~v~v~~~~e--------------~~~~~~----~g~~ 143 (217)
T cd00331 88 YEARAAGADAVLLIVAALDD------EQLKELYELARELGMEVLVEVHDEEE--------------LERALA----LGAK 143 (217)
T ss_pred HHHHHcCCCEEEEeeccCCH------HHHHHHHHHHHHcCCeEEEEECCHHH--------------HHHHHH----cCCC
Confidence 46889999999999986532 23334466778899999999964322 222222 2344
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccCCh
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
++.|=|... +-..++.+.+ ..+++.+ ..++|++.+|+|+. +|+.+++. .+.||++||++-+++
T Consensus 144 ~i~~t~~~~--~~~~~~~~~~----~~l~~~~--------~~~~pvia~gGI~s~edi~~~~~-~Ga~gvivGsai~~~ 207 (217)
T cd00331 144 IIGINNRDL--KTFEVDLNTT----ERLAPLI--------PKDVILVSESGISTPEDVKRLAE-AGADAVLIGESLMRA 207 (217)
T ss_pred EEEEeCCCc--cccCcCHHHH----HHHHHhC--------CCCCEEEEEcCCCCHHHHHHHHH-cCCCEEEECHHHcCC
Confidence 666755431 1112333222 2232221 13589999999976 88888876 599999999997763
No 27
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.67 E-value=0.00095 Score=54.62 Aligned_cols=126 Identities=16% Similarity=0.124 Sum_probs=71.6
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCC-CeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRG-LKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~g-l~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
++++++|++++++.+++++.-..|....+ ++.+.+.+ +..++++-.. ++. ..+.. ..-
T Consensus 86 ~~a~~aGad~I~~~~~~~~~p~~~~~~~~---i~~~~~~g~~~iiv~v~t~-~ea-------------~~a~~----~G~ 144 (219)
T cd04729 86 DALAAAGADIIALDATDRPRPDGETLAEL---IKRIHEEYNCLLMADISTL-EEA-------------LNAAK----LGF 144 (219)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCcCHHHH---HHHHHHHhCCeEEEECCCH-HHH-------------HHHHH----cCC
Confidence 46779999999999999874333344433 45556666 7666655422 211 11111 122
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCCh
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
.+|..++.=..+......... -+..+.+|+. .++|++-+|+| +++|+.+++. .+.||+++|++-.++
T Consensus 145 d~i~~~~~g~t~~~~~~~~~~-~~~l~~i~~~----------~~ipvia~GGI~~~~~~~~~l~-~GadgV~vGsal~~~ 212 (219)
T cd04729 145 DIIGTTLSGYTEETAKTEDPD-FELLKELRKA----------LGIPVIAEGRINSPEQAAKALE-LGADAVVVGSAITRP 212 (219)
T ss_pred CEEEccCccccccccCCCCCC-HHHHHHHHHh----------cCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEchHHhCh
Confidence 334333321111111001111 1233444433 14999999999 5789999888 679999999987664
Q ss_pred H
Q 039862 160 E 160 (173)
Q Consensus 160 ~ 160 (173)
+
T Consensus 213 ~ 213 (219)
T cd04729 213 E 213 (219)
T ss_pred H
Confidence 3
No 28
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.54 E-value=0.0019 Score=53.72 Aligned_cols=136 Identities=16% Similarity=0.302 Sum_probs=85.9
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+.+.++|++++.+ |.|-- ..+.+=++...++|+.+-+-+.-... . +.+..+++.++ .=+
T Consensus 75 ~~~~~~gad~i~~-H~Ea~-------~~~~~~l~~ik~~g~k~GlalnP~Tp-------~----~~i~~~l~~~D--~vl 133 (220)
T PRK08883 75 PDFAKAGASMITF-HVEAS-------EHVDRTLQLIKEHGCQAGVVLNPATP-------L----HHLEYIMDKVD--LIL 133 (220)
T ss_pred HHHHHhCCCEEEE-cccCc-------ccHHHHHHHHHHcCCcEEEEeCCCCC-------H----HHHHHHHHhCC--eEE
Confidence 3567889997754 88741 23445567888899998777765321 1 23445555443 225
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-H
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-E 160 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~-~ 160 (173)
+..-+|-+. |+..-|...+. ++.+|+.+.+. +-+++|.-.|+|+++|+.++.. .|+|++-+|++-.+. +
T Consensus 134 vMtV~PGfg---Gq~fi~~~lek-I~~l~~~~~~~-----~~~~~I~vdGGI~~eni~~l~~-aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 134 LMSVNPGFG---GQSFIPHTLDK-LRAVRKMIDES-----GRDIRLEIDGGVKVDNIREIAE-AGADMFVAGSAIFGQPD 203 (220)
T ss_pred EEEecCCCC---CceecHhHHHH-HHHHHHHHHhc-----CCCeeEEEECCCCHHHHHHHHH-cCCCEEEEeHHHhCCCC
Confidence 567788664 54444444442 44445544321 2358899999999999887775 999999999986652 3
Q ss_pred HHHHHHHH
Q 039862 161 FIDIIKSA 168 (173)
Q Consensus 161 f~~Ii~~~ 168 (173)
+.+.++.+
T Consensus 204 ~~~~i~~l 211 (220)
T PRK08883 204 YKAVIDEM 211 (220)
T ss_pred HHHHHHHH
Confidence 54444443
No 29
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.51 E-value=0.0035 Score=50.70 Aligned_cols=124 Identities=20% Similarity=0.236 Sum_probs=72.0
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCC-CHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGE-TLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE-~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
.++++|++++.+ |-+ .++....-++.+.+.|+.+.+=++. +..++ ++...... .
T Consensus 79 ~~~~~g~d~v~v-h~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~------------~~~~~~~~----d- 133 (220)
T PRK05581 79 DFAKAGADIITF-HVE-------ASEHIHRLLQLIKSAGIKAGLVLNPATPLEP------------LEDVLDLL----D- 133 (220)
T ss_pred HHHHcCCCEEEE-eec-------cchhHHHHHHHHHHcCCEEEEEECCCCCHHH------------HHHHHhhC----C-
Confidence 456788888543 222 1223334477788899988877652 22221 11222211 1
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
+|.|=|+..-+||.+..++- .+..+.+|++.... +-..+|..+|+++++|+.++.. .++||+-||++-++
T Consensus 134 ~i~~~~~~~g~tg~~~~~~~-~~~i~~~~~~~~~~-----~~~~~i~v~GGI~~~nv~~l~~-~GaD~vvvgSai~~ 203 (220)
T PRK05581 134 LVLLMSVNPGFGGQKFIPEV-LEKIRELRKLIDER-----GLDILIEVDGGINADNIKECAE-AGADVFVAGSAVFG 203 (220)
T ss_pred EEEEEEECCCCCcccccHHH-HHHHHHHHHHHHhc-----CCCceEEEECCCCHHHHHHHHH-cCCCEEEEChhhhC
Confidence 33333433345666444444 44556666653210 0024577899999999999887 78999999999886
No 30
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.47 E-value=0.0024 Score=54.12 Aligned_cols=119 Identities=22% Similarity=0.274 Sum_probs=73.7
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEE-EEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVI-ACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pI-lCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
+.++++|++++++ |-+ ..+....=+..+.++|+.++ +|--.|..+| +..+++. ..
T Consensus 109 ~~~~~aGvdgvii-pDl-------p~ee~~~~~~~~~~~gl~~i~lv~P~T~~er------------i~~i~~~----~~ 164 (256)
T TIGR00262 109 AKCKEVGVDGVLV-ADL-------PLEESGDLVEAAKKHGVKPIFLVAPNADDER------------LKQIAEK----SQ 164 (256)
T ss_pred HHHHHcCCCEEEE-CCC-------ChHHHHHHHHHHHHCCCcEEEEECCCCCHHH------------HHHHHHh----CC
Confidence 4678999999887 322 22334444788899999988 6666664432 2223322 11
Q ss_pred eEEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-cccHHHHhcCCCCCEEEeecccC
Q 039862 81 VVLAYEPVWAIG-TGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-GANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 81 iiIAYEPvwAIG-tG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl 157 (173)
-.|-|=.+- | ||.. .-++.+.+.++.+|+.. +.||.-||+|+ ++++++++. .+.||+.||++-+
T Consensus 165 gfiy~vs~~--G~TG~~~~~~~~~~~~i~~lr~~~----------~~pi~vgfGI~~~e~~~~~~~-~GADgvVvGSaiv 231 (256)
T TIGR00262 165 GFVYLVSRA--GVTGARNRAASALNELVKRLKAYS----------AKPVLVGFGISKPEQVKQAID-AGADGVIVGSAIV 231 (256)
T ss_pred CCEEEEECC--CCCCCcccCChhHHHHHHHHHhhc----------CCCEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHH
Confidence 111111221 3 5654 22444666777777641 35899999998 777777554 7899999999854
No 31
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.38 E-value=0.0024 Score=49.02 Aligned_cols=122 Identities=20% Similarity=0.131 Sum_probs=74.4
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
.++++.|++++.++.+.... .+....+.++++... .++..++.+.-..+... .+ +. ...-.
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~--~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~---------~~----~~---~~g~d 138 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL--AREDLELIRELREAV-PDVKVVVKLSPTGELAA---------AA----AE---EAGVD 138 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH--HHHHHHHHHHHHHhc-CCceEEEEECCCCccch---------hh----HH---HcCCC
Confidence 36789999999999887521 111122223333333 37888877764432110 00 11 12235
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCc-ccHHHHhcCCCCCEEEeec
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNG-ANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~ 154 (173)
.|.+.|.|.-+++..+.+.. ...++.. +. ..++||+++|+++. +|+.+++.. +.||+.+|+
T Consensus 139 ~i~~~~~~~~~~~~~~~~~~----~~~~~~~-~~------~~~~pi~~~GGi~~~~~~~~~~~~-Gad~v~vgs 200 (200)
T cd04722 139 EVGLGNGGGGGGGRDAVPIA----DLLLILA-KR------GSKVPVIAGGGINDPEDAAEALAL-GADGVIVGS 200 (200)
T ss_pred EEEEcCCcCCCCCccCchhH----HHHHHHH-Hh------cCCCCEEEECCCCCHHHHHHHHHh-CCCEEEecC
Confidence 67888988877666655421 1112111 11 23589999999999 999999986 899999996
No 32
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.34 E-value=0.0045 Score=52.91 Aligned_cols=119 Identities=15% Similarity=0.255 Sum_probs=71.8
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeE
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVV 82 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ii 82 (173)
.++++|++.+++ |=+- +.|.++. ...+.++|+.+|+=|--+... +.++.+.+. ..-+
T Consensus 114 ~~~~aGvdgvii-pDLP---~ee~~~~----~~~~~~~gi~~I~lv~PtT~~-----------eri~~i~~~----a~gF 170 (263)
T CHL00200 114 KISQAGVKGLII-PDLP---YEESDYL----ISVCNLYNIELILLIAPTSSK-----------SRIQKIARA----APGC 170 (263)
T ss_pred HHHHcCCeEEEe-cCCC---HHHHHHH----HHHHHHcCCCEEEEECCCCCH-----------HHHHHHHHh----CCCc
Confidence 357788888876 2221 3343333 567788888888777665321 122222221 1211
Q ss_pred EEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-cccHHHHhcCCCCCEEEeecccC
Q 039862 83 LAYEPVWAIG-TGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-GANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 83 IAYEPvwAIG-tG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl 157 (173)
|=|=. --| ||.. .-++.+.+.++.+|+. .+.||..|++|+ +++++++. ..+.||+.||+|-+
T Consensus 171 IY~vS--~~GvTG~~~~~~~~~~~~i~~ir~~----------t~~Pi~vGFGI~~~e~~~~~~-~~GADGvVVGSalv 235 (263)
T CHL00200 171 IYLVS--TTGVTGLKTELDKKLKKLIETIKKM----------TNKPIILGFGISTSEQIKQIK-GWNINGIVIGSACV 235 (263)
T ss_pred EEEEc--CCCCCCCCccccHHHHHHHHHHHHh----------cCCCEEEECCcCCHHHHHHHH-hcCCCEEEECHHHH
Confidence 21111 123 4443 3467788888888874 258999999999 66777644 47799999999853
No 33
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.31 E-value=0.0073 Score=48.17 Aligned_cols=127 Identities=12% Similarity=0.093 Sum_probs=71.7
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEE-EeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIA-CVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIl-CvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
+.+.++|++++++ |.|-- .+....=++.+.++|+.+++ |++=.... +.+ .++. ..-
T Consensus 71 ~~~~~aGad~i~~-h~~~~------~~~~~~~i~~~~~~g~~~~v~~~~~~t~~-------e~~-----~~~~----~~~ 127 (202)
T cd04726 71 EMAFKAGADIVTV-LGAAP------LSTIKKAVKAAKKYGKEVQVDLIGVEDPE-------KRA-----KLLK----LGV 127 (202)
T ss_pred HHHHhcCCCEEEE-EeeCC------HHHHHHHHHHHHHcCCeEEEEEeCCCCHH-------HHH-----HHHH----CCC
Confidence 3567888888876 33320 11122225667778998886 34332111 111 1222 122
Q ss_pred eEEEEcccccccCC-CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 81 VVLAYEPVWAIGTG-KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 81 iiIAYEPvwAIGtG-~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
-++.+.|..--++. ....++.+++ +++. .++|+.-+|+|+++|+.+++. .++||+.+|++-.+.
T Consensus 128 d~v~~~~~~~~~~~~~~~~~~~i~~----~~~~----------~~~~i~~~GGI~~~~i~~~~~-~Gad~vvvGsai~~~ 192 (202)
T cd04726 128 DIVILHRGIDAQAAGGWWPEDDLKK----VKKL----------LGVKVAVAGGITPDTLPEFKK-AGADIVIVGRAITGA 192 (202)
T ss_pred CEEEEcCcccccccCCCCCHHHHHH----HHhh----------cCCCEEEECCcCHHHHHHHHh-cCCCEEEEeehhcCC
Confidence 35566665433332 2333433333 2221 258999999999999998886 699999999987653
Q ss_pred -HHHHHHH
Q 039862 160 -EFIDIIK 166 (173)
Q Consensus 160 -~f~~Ii~ 166 (173)
+..+.++
T Consensus 193 ~d~~~~~~ 200 (202)
T cd04726 193 ADPAEAAR 200 (202)
T ss_pred CCHHHHHh
Confidence 3544443
No 34
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.04 E-value=0.016 Score=49.10 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=75.9
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeE
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVV 82 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ii 82 (173)
..+++|++.+++.-+=++ ++.+..=++.|.+.||.+++|+-+..+.. .++. ....+
T Consensus 128 ~a~~~GAD~VlLi~~~l~------~~~l~~li~~a~~lGl~~lvevh~~~E~~--------------~A~~----~gadi 183 (260)
T PRK00278 128 EARAAGADAILLIVAALD------DEQLKELLDYAHSLGLDVLVEVHDEEELE--------------RALK----LGAPL 183 (260)
T ss_pred HHHHcCCCEEEEEeccCC------HHHHHHHHHHHHHcCCeEEEEeCCHHHHH--------------HHHH----cCCCE
Confidence 567899999999988743 24666678999999999999998865431 2222 23456
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCCh
Q 039862 83 LAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 83 IAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
|.|=| |-..|- ..+++...+ .++ .+ ....+++-.|++ +++++..+.. .+.||++||++-+++
T Consensus 184 Igin~-rdl~~~-~~d~~~~~~---l~~-~~--------p~~~~vIaegGI~t~ed~~~~~~-~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 184 IGINN-RNLKTF-EVDLETTER---LAP-LI--------PSDRLVVSESGIFTPEDLKRLAK-AGADAVLVGESLMRA 246 (260)
T ss_pred EEECC-CCcccc-cCCHHHHHH---HHH-hC--------CCCCEEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHcCC
Confidence 77643 212222 123333222 222 11 123567765555 7888888887 599999999998874
No 35
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.03 E-value=0.016 Score=47.23 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=68.9
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+.++++|++.+.++.. +..+. ++.+.+.++.++.-+... .++..+.. ....
T Consensus 74 ~~~~~~g~d~v~l~~~-------~~~~~----~~~~~~~~i~~i~~v~~~--------------~~~~~~~~----~gad 124 (236)
T cd04730 74 EVALEEGVPVVSFSFG-------PPAEV----VERLKAAGIKVIPTVTSV--------------EEARKAEA----AGAD 124 (236)
T ss_pred HHHHhCCCCEEEEcCC-------CCHHH----HHHHHHcCCEEEEeCCCH--------------HHHHHHHH----cCCC
Confidence 3567889999998765 22222 344556788877655321 12222222 1233
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccCC
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
+|.|.|.-..|++.+.++. ..+.++.+|+. .++|++-+|++++ +|+.+++. .+.||+.||++-+.
T Consensus 125 ~i~~~~~~~~G~~~~~~~~-~~~~i~~i~~~----------~~~Pvi~~GGI~~~~~v~~~l~-~GadgV~vgS~l~~ 190 (236)
T cd04730 125 ALVAQGAEAGGHRGTFDIG-TFALVPEVRDA----------VDIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFLA 190 (236)
T ss_pred EEEEeCcCCCCCCCccccC-HHHHHHHHHHH----------hCCCEEEECCCCCHHHHHHHHH-cCCcEEEEchhhhc
Confidence 5667776333333332211 12233333332 2489999999997 89999886 78999999998664
No 36
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.02 E-value=0.027 Score=46.52 Aligned_cols=124 Identities=18% Similarity=0.123 Sum_probs=76.0
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeC-CCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVG-ETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvG-E~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
.+.++|+++|.+ |.|. -.++.....++.+.+.|+.+-+=+. .|.. ++++..+.. ....
T Consensus 83 ~~~~~gad~v~v-H~~q-----~~~d~~~~~~~~i~~~g~~iGls~~~~t~~------------~~~~~~~~~---~~~D 141 (229)
T PLN02334 83 DFAKAGASIFTF-HIEQ-----ASTIHLHRLIQQIKSAGMKAGVVLNPGTPV------------EAVEPVVEK---GLVD 141 (229)
T ss_pred HHHHcCCCEEEE-eecc-----ccchhHHHHHHHHHHCCCeEEEEECCCCCH------------HHHHHHHhc---cCCC
Confidence 457788888843 3331 0123455678888889986655443 1221 223334443 0023
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
+|.+=|++.-.+|....+...+. ++.+|+.. .++||.-=|+|+++|+.++.. .++||+-+|++-+.
T Consensus 142 yi~~~~v~pg~~~~~~~~~~~~~-i~~~~~~~---------~~~~I~a~GGI~~e~i~~l~~-aGad~vvvgsai~~ 207 (229)
T PLN02334 142 MVLVMSVEPGFGGQSFIPSMMDK-VRALRKKY---------PELDIEVDGGVGPSTIDKAAE-AGANVIVAGSAVFG 207 (229)
T ss_pred EEEEEEEecCCCccccCHHHHHH-HHHHHHhC---------CCCcEEEeCCCCHHHHHHHHH-cCCCEEEEChHHhC
Confidence 56666777755665554544444 33444431 236888889999999998886 89999999998765
No 37
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.95 E-value=0.016 Score=48.54 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=83.9
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHH------------hcCChHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQR------------ESGSTVAVVAEQTK 69 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r------------~~~~~~~~l~~Ql~ 69 (173)
+++.+.|.+.+|||=|- +-+.+.+.+-+.+..+..+-.|+-.|...... ++.+..-.+..|.+
T Consensus 21 ~~~~~~gtdai~vGGS~-----~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~ 95 (223)
T TIGR01768 21 KAAAESGTDAILIGGSQ-----GVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQIE 95 (223)
T ss_pred HHHHhcCCCEEEEcCCC-----cccHHHHHHHHHHHhccCCCEEEeCCCccccCcCCCEEEEEEeecCCCchHHHhHHHH
Confidence 46788999999999995 34444455556777778877777777765321 22233334444444
Q ss_pred HHHhccCC--CCCeEEEE---ccccccc---CCCC--CCHHHHHH-----------------------------HHHHHH
Q 039862 70 AIAEKISN--WDNVVLAY---EPVWAIG---TGKV--ATPAQAQE-----------------------------VHAELR 110 (173)
Q Consensus 70 ~~l~~v~~--~~~iiIAY---EPvwAIG---tG~~--a~~e~i~~-----------------------------~~~~Ir 110 (173)
.+ ..+.. ..-+--+| +|--+.| .-++ .+.+++.. +++.+|
T Consensus 96 ~~-~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~ 174 (223)
T TIGR01768 96 AA-PKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVK 174 (223)
T ss_pred HH-HHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHH
Confidence 33 22211 11111133 3322222 1111 22333322 223333
Q ss_pred HHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHH
Q 039862 111 KWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDII 165 (173)
Q Consensus 111 ~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii 165 (173)
+. ..++|++|||+|......+-+...+.|++.||++..+ ++ +.+++
T Consensus 175 ~~---------~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~~v 222 (223)
T TIGR01768 175 KV---------LDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALETI 222 (223)
T ss_pred HH---------cCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHHhh
Confidence 32 1258999999999887655566679999999998886 55 55543
No 38
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.69 E-value=0.053 Score=44.26 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=30.3
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCCh
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
++|++-+|++ +++++.+++. .+.||++||++-+++
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~-~GadgV~iGsai~~~ 208 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALE-LGAHAVVVGGAITRP 208 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHH-CCCCEEEEchHhcCC
Confidence 4899999999 5899999887 679999999987764
No 39
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.64 E-value=0.0027 Score=54.13 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 93 TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 93 tG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
||.+++++.++++ |+. .. +|||-|++|+++|+.++++ ..||+.||+.
T Consensus 183 TG~~~~~~~l~~v----r~~---------~~-~PVlvGSGvt~~Ni~~~l~--~ADG~IVGS~ 229 (254)
T PF03437_consen 183 TGEPPDPEKLKRV----REA---------VP-VPVLVGSGVTPENIAEYLS--YADGAIVGSY 229 (254)
T ss_pred cCCCCCHHHHHHH----Hhc---------CC-CCEEEecCCCHHHHHHHHH--hCCEEEEeee
Confidence 6888999987764 332 22 8999999999999999996 4799999975
No 40
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.52 E-value=0.0046 Score=52.87 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=39.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 92 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 92 GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
|||.+++++.++.+ |+. ..++|++-||+|+++|+.++++. .||+-||+.
T Consensus 181 ~TG~~~d~~~l~~v----r~~---------~~~~PvllggGvt~eNv~e~l~~--adGviVgS~ 229 (257)
T TIGR00259 181 TTGTEVDLELLKLA----KET---------VKDTPVLAGSGVNLENVEELLSI--ADGVIVATT 229 (257)
T ss_pred CCCCCCCHHHHHHH----Hhc---------cCCCeEEEECCCCHHHHHHHHhh--CCEEEECCC
Confidence 58999999988753 332 23579999999999999999985 899999875
No 41
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.40 E-value=0.066 Score=44.52 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=78.3
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHH--hccCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIA--EKISNWD 79 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l--~~v~~~~ 79 (173)
+.+.++|++++.+ |.|- ++..+.+-++.+.+.|+.+-+.+--... . +++...+ ..++.
T Consensus 82 ~~~~~~Gad~itv-H~ea------~~~~~~~~l~~ik~~G~~~gval~p~t~-------~----e~l~~~l~~~~vD~-- 141 (228)
T PTZ00170 82 DDFAKAGASQFTF-HIEA------TEDDPKAVARKIREAGMKVGVAIKPKTP-------V----EVLFPLIDTDLVDM-- 141 (228)
T ss_pred HHHHHcCCCEEEE-eccC------CchHHHHHHHHHHHCCCeEEEEECCCCC-------H----HHHHHHHccchhhh--
Confidence 4578899999988 6663 1222556677888899887776653211 1 2222333 22221
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
=++.+.+|-++ |....++...++ +.+|+. ++ .+.|.--|+|+++|+.++.. .++|.+.+|++-.+
T Consensus 142 Vl~m~v~pG~~---gq~~~~~~~~ki-~~~~~~----~~-----~~~I~VdGGI~~~ti~~~~~-aGad~iVvGsaI~~ 206 (228)
T PTZ00170 142 VLVMTVEPGFG---GQSFMHDMMPKV-RELRKR----YP-----HLNIQVDGGINLETIDIAAD-AGANVIVAGSSIFK 206 (228)
T ss_pred HHhhhcccCCC---CcEecHHHHHHH-HHHHHh----cc-----cCeEEECCCCCHHHHHHHHH-cCCCEEEEchHHhC
Confidence 12467888764 666666555553 334443 21 36688899999999887776 79999999998664
No 42
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.35 E-value=0.2 Score=42.20 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=87.2
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCC--eEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGL--KVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD 79 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl--~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~ 79 (173)
+.+.++|++++.+ |.|-- ..+.+=++...++|+ .+=+.+.=... . +++...+..++ .
T Consensus 85 ~~~~~aGad~It~-H~Ea~-------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp-------~----~~i~~~l~~vD--~ 143 (228)
T PRK08091 85 KACVAAGADIVTL-QVEQT-------HDLALTIEWLAKQKTTVLIGLCLCPETP-------I----SLLEPYLDQID--L 143 (228)
T ss_pred HHHHHhCCCEEEE-cccCc-------ccHHHHHHHHHHCCCCceEEEEECCCCC-------H----HHHHHHHhhcC--E
Confidence 3568899997654 88842 223444677788898 77666653211 1 23445555443 2
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK- 158 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~- 158 (173)
=++..-||-. +|+..-++..++ ++.+|+.+.+. +-++.|--=|+||.+|+..+.. .|+|.+.+|++-.+
T Consensus 144 VLiMtV~PGf---gGQ~f~~~~l~K-I~~lr~~~~~~-----~~~~~IeVDGGI~~~ti~~l~~-aGaD~~V~GSalF~~ 213 (228)
T PRK08091 144 IQILTLDPRT---GTKAPSDLILDR-VIQVENRLGNR-----RVEKLISIDGSMTLELASYLKQ-HQIDWVVSGSALFSQ 213 (228)
T ss_pred EEEEEECCCC---CCccccHHHHHH-HHHHHHHHHhc-----CCCceEEEECCCCHHHHHHHHH-CCCCEEEEChhhhCC
Confidence 3577889965 477766665555 44455555432 2357788899999999886665 89999888887655
Q ss_pred hHHHHHHHHHh
Q 039862 159 PEFIDIIKSAT 169 (173)
Q Consensus 159 ~~f~~Ii~~~~ 169 (173)
+++.+.++...
T Consensus 214 ~d~~~~i~~l~ 224 (228)
T PRK08091 214 GELKTTLKEWK 224 (228)
T ss_pred CCHHHHHHHHH
Confidence 34666665543
No 43
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.35 E-value=0.061 Score=42.98 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=44.7
Q ss_pred eEEEEcccccccCCCCCC----HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeeccc
Q 039862 81 VVLAYEPVWAIGTGKVAT----PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~----~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~as 156 (173)
.+|..-|+...++..... .+.+++ +++.+ .++||+--|+|+++|+.+++. .+.||+.+|++-
T Consensus 126 D~v~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~---------~~~~v~a~GGI~~~~i~~~~~-~Ga~gv~~gs~i 191 (212)
T PRK00043 126 DYVGVGPIFPTPTKKDAKAPQGLEGLRE----IRAAV---------GDIPIVAIGGITPENAPEVLE-AGADGVAVVSAI 191 (212)
T ss_pred CEEEECCccCCCCCCCCCCCCCHHHHHH----HHHhc---------CCCCEEEECCcCHHHHHHHHH-cCCCEEEEeHHh
Confidence 456666887776654332 333333 33321 238899999999999998887 799999999987
Q ss_pred CC
Q 039862 157 LK 158 (173)
Q Consensus 157 l~ 158 (173)
++
T Consensus 192 ~~ 193 (212)
T PRK00043 192 TG 193 (212)
T ss_pred hc
Confidence 65
No 44
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.07 E-value=0.059 Score=44.83 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=75.7
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHH---hcCChHHHHHHHHHHHHhccCCCC
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQR---ESGSTVAVVAEQTKAIAEKISNWD 79 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r---~~~~~~~~l~~Ql~~~l~~v~~~~ 79 (173)
.+-+.||+.|++|=+=-+ |+.+ +++..... +-..|+|+.=..... ..+....-+.+++... . .
T Consensus 95 ~~l~~Ga~~viigt~~~~------~~~~-~~~~~~~~-~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~ 160 (233)
T cd04723 95 EWLKRGASRVIVGTETLP------SDDD-EDRLAALG-EQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-P-----E 160 (233)
T ss_pred HHHHcCCCeEEEcceecc------chHH-HHHHHhcC-CCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-C-----C
Confidence 456789999999865322 1222 22222221 126788887543211 1233344444444443 2 2
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.++ |=-+-.-||+..++.+.++++.+. .++|++|||+|...+..+-+...++||++||+|-+.
T Consensus 161 ~li--~~di~~~G~~~g~~~~~~~~i~~~--------------~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 161 ELI--VLDIDRVGSGQGPDLELLERLAAR--------------ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred eEE--EEEcCccccCCCcCHHHHHHHHHh--------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 232 445677888888888777665432 248999999998866444444479999999998765
No 45
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.03 E-value=0.31 Score=39.05 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=74.0
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEE-eCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIAC-VGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlC-vGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
+++.++|++++.+ |.|.- ...+.+=++.+.+.|+.+++= .+-.. ..+++..+.. ..-
T Consensus 70 ~~~~~~Gad~i~v-h~~~~------~~~~~~~i~~~~~~g~~~~~~~~~~~t-----------~~~~~~~~~~----~g~ 127 (206)
T TIGR03128 70 EQAFAAGADIVTV-LGVAD------DATIKGAVKAAKKHGKEVQVDLINVKD-----------KVKRAKELKE----LGA 127 (206)
T ss_pred HHHHHcCCCEEEE-eccCC------HHHHHHHHHHHHHcCCEEEEEecCCCC-----------hHHHHHHHHH----cCC
Confidence 4678899998874 66541 122334467788899998863 23210 1122223332 122
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP- 159 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~- 159 (173)
.+|...|...-.+-.+..++.+.++.+.+ ..+++.-=|+|+++|+.+++. .++|++.+|++-++.
T Consensus 128 d~v~~~pg~~~~~~~~~~~~~i~~l~~~~-------------~~~~i~v~GGI~~~n~~~~~~-~Ga~~v~vGsai~~~~ 193 (206)
T TIGR03128 128 DYIGVHTGLDEQAKGQNPFEDLQTILKLV-------------KEARVAVAGGINLDTIPDVIK-LGPDIVIVGGAITKAA 193 (206)
T ss_pred CEEEEcCCcCcccCCCCCHHHHHHHHHhc-------------CCCcEEEECCcCHHHHHHHHH-cCCCEEEEeehhcCCC
Confidence 36677774432222223344443332221 124565447889999999985 899999999997753
Q ss_pred HHHHHHHHH
Q 039862 160 EFIDIIKSA 168 (173)
Q Consensus 160 ~f~~Ii~~~ 168 (173)
+..+.++.+
T Consensus 194 d~~~~~~~l 202 (206)
T TIGR03128 194 DPAEAARQI 202 (206)
T ss_pred CHHHHHHHH
Confidence 344444443
No 46
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.03 E-value=0.013 Score=47.77 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=43.8
Q ss_pred EEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccCC
Q 039862 84 AYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 84 AYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl~ 158 (173)
.|=++..-|+..-++.+.++++.+. .++|++++|+|+..+ +.++++ .++||++||++.++
T Consensus 164 ii~~~~~~g~~~g~~~~~i~~i~~~--------------~~ipvi~~GGi~~~~di~~~~~-~Ga~gv~vg~~~~~ 224 (234)
T cd04732 164 IYTDISRDGTLSGPNFELYKELAAA--------------TGIPVIASGGVSSLDDIKALKE-LGVAGVIVGKALYE 224 (234)
T ss_pred EEEeecCCCccCCCCHHHHHHHHHh--------------cCCCEEEecCCCCHHHHHHHHH-CCCCEEEEeHHHHc
Confidence 3447788887766666555543321 248999999999776 677766 59999999998775
No 47
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=95.99 E-value=0.12 Score=44.16 Aligned_cols=118 Identities=25% Similarity=0.343 Sum_probs=71.6
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCC-HHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGET-LEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~-~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
+.+++.|++.+|+=-- -+.|.++. ...+.++||.+|.=|--+ .++| ++.+... .+
T Consensus 109 ~~~~~aGvdGlIipDL----P~ee~~~~----~~~~~~~gl~~I~lv~p~t~~~R------------i~~i~~~----a~ 164 (259)
T PF00290_consen 109 KEAKEAGVDGLIIPDL----PPEESEEL----REAAKKHGLDLIPLVAPTTPEER------------IKKIAKQ----AS 164 (259)
T ss_dssp HHHHHHTEEEEEETTS----BGGGHHHH----HHHHHHTT-EEEEEEETTS-HHH------------HHHHHHH-----S
T ss_pred HHHHHcCCCEEEEcCC----ChHHHHHH----HHHHHHcCCeEEEEECCCCCHHH------------HHHHHHh----CC
Confidence 3567888888887432 12333333 356778999999888774 3332 3333321 12
Q ss_pred eEEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC
Q 039862 81 VVLAYEPVWAIG-TGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 81 iiIAYEPvwAIG-tG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl 157 (173)
-+ .|=.. .-| ||.. .-++++.+.++.||+. .+.|+..|=+|+... ++++. .+.||+.||++-+
T Consensus 165 gF-iY~vs-~~GvTG~~~~~~~~l~~~i~~ik~~----------~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v 230 (259)
T PF00290_consen 165 GF-IYLVS-RMGVTGSRTELPDELKEFIKRIKKH----------TDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFV 230 (259)
T ss_dssp SE-EEEES-SSSSSSTTSSCHHHHHHHHHHHHHT----------TSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHH
T ss_pred cE-EEeec-cCCCCCCcccchHHHHHHHHHHHhh----------cCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHH
Confidence 22 24321 233 5654 3467888888888875 269999999998765 55555 8999999999844
No 48
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=95.98 E-value=0.059 Score=44.00 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=41.2
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhcCCCCCEEEeecccCC
Q 039862 87 PVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 87 PvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++-.-|+..-++.+.++++.+. -++|++++|+|..- .+.++++..++||++||++-++
T Consensus 167 ~~~~~g~~~G~d~~~i~~l~~~--------------~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 167 DISRDGTLSGPNVEATRELAAA--------------VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred eecCcCCcCCCCHHHHHHHHHh--------------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4555666555777666654332 13899998888774 4677777666999999999765
No 49
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.97 E-value=0.34 Score=40.45 Aligned_cols=136 Identities=17% Similarity=0.275 Sum_probs=86.6
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+.+.++|++++.+ |.|-- ..+.+=++...++|+.+=+-+.=.. .. +.+..++..++ .=+
T Consensus 79 ~~~~~~gad~I~~-H~Ea~-------~~~~~~l~~Ir~~g~k~GlalnP~T-------~~----~~i~~~l~~vD--~Vl 137 (223)
T PRK08745 79 PDFADAGATTISF-HPEAS-------RHVHRTIQLIKSHGCQAGLVLNPAT-------PV----DILDWVLPELD--LVL 137 (223)
T ss_pred HHHHHhCCCEEEE-cccCc-------ccHHHHHHHHHHCCCceeEEeCCCC-------CH----HHHHHHHhhcC--EEE
Confidence 3567889997654 88841 2244456778888988765554321 11 22334454433 235
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-H
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-E 160 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~-~ 160 (173)
+..-||-. .|+..-|+..++ ++.+|+.+.+. +.++.|---|+|+.+|+..+.. .|+|.+.+|++-.+. +
T Consensus 138 vMtV~PGf---~GQ~fi~~~l~K-I~~l~~~~~~~-----~~~~~IeVDGGI~~eti~~l~~-aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 138 VMSVNPGF---GGQAFIPSALDK-LRAIRKKIDAL-----GKPIRLEIDGGVKADNIGAIAA-AGADTFVAGSAIFNAPD 207 (223)
T ss_pred EEEECCCC---CCccccHHHHHH-HHHHHHHHHhc-----CCCeeEEEECCCCHHHHHHHHH-cCCCEEEEChhhhCCCC
Confidence 77889955 477777766665 44556655432 2357789999999999887665 899999999986653 3
Q ss_pred HHHHHHHH
Q 039862 161 FIDIIKSA 168 (173)
Q Consensus 161 f~~Ii~~~ 168 (173)
+.+.++.+
T Consensus 208 ~~~~~~~l 215 (223)
T PRK08745 208 YAQVIAQM 215 (223)
T ss_pred HHHHHHHH
Confidence 54444443
No 50
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.83 E-value=0.43 Score=40.11 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=86.3
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeE
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVV 82 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ii 82 (173)
.+.++|++++.+ |.|.- +..+.+-++...++|+++=+-+.=.. .. +.+..+|+.++ .=++
T Consensus 77 ~~~~aGad~it~-H~Ea~------~~~~~~~i~~Ik~~G~kaGlalnP~T-------~~----~~l~~~l~~vD--~VLv 136 (229)
T PRK09722 77 QLADAGADFITL-HPETI------NGQAFRLIDEIRRAGMKVGLVLNPET-------PV----ESIKYYIHLLD--KITV 136 (229)
T ss_pred HHHHcCCCEEEE-CccCC------cchHHHHHHHHHHcCCCEEEEeCCCC-------CH----HHHHHHHHhcC--EEEE
Confidence 567889998765 77741 11244556888889998766554321 11 23344555443 2356
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC-C--h
Q 039862 83 LAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-K--P 159 (173)
Q Consensus 83 IAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl-~--~ 159 (173)
..-||=. +|+...|+..++ ++.+|+.+.+. +-++.|--=|+||.+|+.++.. .|+|.+.+|++++ + .
T Consensus 137 MsV~PGf---~GQ~fi~~~l~K-I~~lr~~~~~~-----~~~~~IeVDGGI~~~~i~~~~~-aGad~~V~Gss~iF~~~~ 206 (229)
T PRK09722 137 MTVDPGF---AGQPFIPEMLDK-IAELKALRERN-----GLEYLIEVDGSCNQKTYEKLME-AGADVFIVGTSGLFNLDE 206 (229)
T ss_pred EEEcCCC---cchhccHHHHHH-HHHHHHHHHhc-----CCCeEEEEECCCCHHHHHHHHH-cCCCEEEEChHHHcCCCC
Confidence 7788944 577777777666 44556655432 3357788999999999887765 8999999997633 3 2
Q ss_pred HHHHHHHHH
Q 039862 160 EFIDIIKSA 168 (173)
Q Consensus 160 ~f~~Ii~~~ 168 (173)
++.+.++.+
T Consensus 207 d~~~~i~~l 215 (229)
T PRK09722 207 DIDEAWDIM 215 (229)
T ss_pred CHHHHHHHH
Confidence 355554444
No 51
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.79 E-value=0.022 Score=47.57 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=80.4
Q ss_pred hhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHH------------hcCChHHHHHHHHHHH
Q 039862 4 LVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQR------------ESGSTVAVVAEQTKAI 71 (173)
Q Consensus 4 Lkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r------------~~~~~~~~l~~Ql~~~ 71 (173)
+.+.|.+.+|||=|--=. ++-+.+-+-+++.-+ .+..++-.|...... ++++..-.+..|.+.+
T Consensus 21 ~~~~gtdai~vGGS~~v~---~~~~~~~~~ik~~~~-~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~~~~~~ 96 (219)
T cd02812 21 AEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRR-PVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGAQAEAA 96 (219)
T ss_pred HHhcCCCEEEECCccchh---hhHHHHHHHHHHhcC-CCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHHHHHHH
Confidence 445899999999996422 344444344444443 466666777765321 3334445555555443
Q ss_pred HhccC---CCCC-eEEEE---ccccccc---CCC-CCCHHHHHH-------------------------HHHHHHHHHHh
Q 039862 72 AEKIS---NWDN-VVLAY---EPVWAIG---TGK-VATPAQAQE-------------------------VHAELRKWLKD 115 (173)
Q Consensus 72 l~~v~---~~~~-iiIAY---EPvwAIG---tG~-~a~~e~i~~-------------------------~~~~Ir~~~~~ 115 (173)
..+. .+.. +--+| +|--+.| .-. ..+|+++.. +++.+|+.
T Consensus 97 -~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~--- 172 (219)
T cd02812 97 -PEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKV--- 172 (219)
T ss_pred -HHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHh---
Confidence 2221 1221 21233 4533322 111 145555532 12222221
Q ss_pred ccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHH
Q 039862 116 NVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDII 165 (173)
Q Consensus 116 ~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii 165 (173)
..++|++|||+|+.....+-+...+.|++.||++..+ ++ |.+++
T Consensus 173 ------~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~~~~v 218 (219)
T cd02812 173 ------LGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALETV 218 (219)
T ss_pred ------cCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHh
Confidence 1158999999997666444455578999999999887 55 55543
No 52
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.77 E-value=0.073 Score=43.51 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=38.2
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccCC
Q 039862 87 PVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 87 PvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+-.-|+...++.+.+.++ ++. .++|++++|+|...+ +++++ ..++||++||++.+.
T Consensus 166 ~~~~~g~~~g~~~~~i~~i----~~~----------~~ipvia~GGi~~~~di~~~~-~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 166 DISRDGTLSGPNFELTKEL----VKA----------VNVPVIASGGVSSIDDLIALK-KLGVYGVIVGKALYE 223 (230)
T ss_pred eecCCCCcCCCCHHHHHHH----HHh----------CCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEeHHHHc
Confidence 3444465555555555443 222 248999999998866 55555 589999999998765
No 53
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.76 E-value=0.11 Score=44.73 Aligned_cols=118 Identities=21% Similarity=0.312 Sum_probs=71.4
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+++++.|++.+|+=- .-+.|.++. ...|.++||.+|+=+-=+... +.+. .+.. ...=
T Consensus 116 ~~~~~~GvdGlivpD----LP~ee~~~~----~~~~~~~gi~~I~lvaPtt~~-------~rl~----~i~~----~a~G 172 (265)
T COG0159 116 RRAKEAGVDGLLVPD----LPPEESDEL----LKAAEKHGIDPIFLVAPTTPD-------ERLK----KIAE----AASG 172 (265)
T ss_pred HHHHHcCCCEEEeCC----CChHHHHHH----HHHHHHcCCcEEEEeCCCCCH-------HHHH----HHHH----hCCC
Confidence 467889999998742 223344433 577779999998766544321 1122 2221 1111
Q ss_pred EEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeeccc
Q 039862 82 VLAYEPVWAIG-TGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 82 iIAYEPvwAIG-tG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~as 156 (173)
.|=|=.. -| ||.. +..+.+.+.++.||++ .++|+++|=+|+... ++++.+- .||+.||+|-
T Consensus 173 FiY~vs~--~GvTG~~~~~~~~~~~~v~~vr~~----------~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAi 236 (265)
T COG0159 173 FIYYVSR--MGVTGARNPVSADVKELVKRVRKY----------TDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAI 236 (265)
T ss_pred cEEEEec--ccccCCCcccchhHHHHHHHHHHh----------cCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHH
Confidence 2222121 12 4544 2234477888888876 269999998887655 5666654 9999999983
No 54
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=95.53 E-value=0.018 Score=49.11 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 93 TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 93 tG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
||.++++++++.+.+. ..+|+|-|-+|+++|+.++++. .||+.||..
T Consensus 188 TG~~~d~~el~~a~~~--------------~~~pvlvGSGv~~eN~~~~l~~--adG~IvgT~ 234 (263)
T COG0434 188 TGSPPDLEELKLAKEA--------------VDTPVLVGSGVNPENIEELLKI--ADGVIVGTS 234 (263)
T ss_pred CCCCCCHHHHHHHHhc--------------cCCCEEEecCCCHHHHHHHHHH--cCceEEEEE
Confidence 7888999998764433 2399999999999999999986 799999864
No 55
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.46 E-value=0.019 Score=50.07 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=35.3
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDI 164 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~I 164 (173)
++||++-|.| +++.+.+++...++||+.||++.+. |. |.++
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVV 237 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHh
Confidence 4899998887 6777899999999999999999995 87 7765
No 56
>PRK14057 epimerase; Provisional
Probab=95.40 E-value=0.53 Score=40.26 Aligned_cols=134 Identities=17% Similarity=0.246 Sum_probs=84.5
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCC-----------eEEEEeCCCHHHHhcCChHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGL-----------KVIACVGETLEQRESGSTVAVVAEQTKA 70 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl-----------~pIlCvGE~~~~r~~~~~~~~l~~Ql~~ 70 (173)
+.+.++|++++.+ |.|-- ..+.+-++...++|+ -..+|-+.+.+ .+..
T Consensus 92 ~~~~~aGad~It~-H~Ea~-------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e-------------~i~~ 150 (254)
T PRK14057 92 QACVKAGAHCITL-QAEGD-------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLD-------------VIIP 150 (254)
T ss_pred HHHHHhCCCEEEE-eeccc-------cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHH-------------HHHH
Confidence 4567899997755 88842 123334566666775 23455555543 2334
Q ss_pred HHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEE
Q 039862 71 IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGF 150 (173)
Q Consensus 71 ~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~ 150 (173)
.++.++ .=++..-||-++ |+...++..++ ++.+|+.+.+. +-++.|--=|+||.+|+.++.. .|+|.+
T Consensus 151 ~l~~vD--~VLvMtV~PGfg---GQ~Fi~~~l~K-I~~lr~~~~~~-----~~~~~IeVDGGI~~~ti~~l~~-aGad~~ 218 (254)
T PRK14057 151 ILSDVE--VIQLLAVNPGYG---SKMRSSDLHER-VAQLLCLLGDK-----REGKIIVIDGSLTQDQLPSLIA-QGIDRV 218 (254)
T ss_pred HHHhCC--EEEEEEECCCCC---chhccHHHHHH-HHHHHHHHHhc-----CCCceEEEECCCCHHHHHHHHH-CCCCEE
Confidence 555443 235778899764 77766666655 34445555432 3357899999999999887766 899999
Q ss_pred EeecccCC-hHHHHHHHHH
Q 039862 151 LVGGASLK-PEFIDIIKSA 168 (173)
Q Consensus 151 LiG~asl~-~~f~~Ii~~~ 168 (173)
..|++-.+ +++.+.++.+
T Consensus 219 V~GSalF~~~d~~~~i~~l 237 (254)
T PRK14057 219 VSGSALFRDDRLVENTRSW 237 (254)
T ss_pred EEChHhhCCCCHHHHHHHH
Confidence 99987664 3355555444
No 57
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=95.38 E-value=0.31 Score=44.03 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=71.2
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+++.++|++++.+ |.|- +.+.+.+-++.+.+.|+.+++|.=.+.. .. +.++.++.+++ -+
T Consensus 244 ~~~a~aGAD~vTV-H~ea------~~~ti~~ai~~akk~GikvgVD~lnp~t------p~----e~i~~l~~~vD---~V 303 (391)
T PRK13307 244 RMAADATADAVVI-SGLA------PISTIEKAIHEAQKTGIYSILDMLNVED------PV----KLLESLKVKPD---VV 303 (391)
T ss_pred HHHHhcCCCEEEE-eccC------CHHHHHHHHHHHHHcCCEEEEEEcCCCC------HH----HHHHHhhCCCC---EE
Confidence 4778999999877 4331 2335777889999999999997433210 00 12222222222 12
Q ss_pred EEE--EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 82 VLA--YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 82 iIA--YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+- +.|- +..+..+ -++.+|+. ..+++|...|+|+++|+.++. ..++|++.+||+-.+
T Consensus 304 llht~vdp~-----~~~~~~~----kI~~ikk~---------~~~~~I~VdGGI~~eti~~l~-~aGADivVVGsaIf~ 363 (391)
T PRK13307 304 ELHRGIDEE-----GTEHAWG----NIKEIKKA---------GGKILVAVAGGVRVENVEEAL-KAGADILVVGRAITK 363 (391)
T ss_pred EEccccCCC-----cccchHH----HHHHHHHh---------CCCCcEEEECCcCHHHHHHHH-HcCCCEEEEeHHHhC
Confidence 121 3442 1222222 23334443 235889999999999988877 489999999998554
No 58
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.34 E-value=0.044 Score=45.82 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=76.6
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHH-------HhcCChHHHHHHHHHHHHhc
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQ-------RESGSTVAVVAEQTKAIAEK 74 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~-------r~~~~~~~~l~~Ql~~~l~~ 74 (173)
+.+-++||+.|++|=+=- ++ ...-+++.. +.|=++++.+.--... .+++....-+.+++...
T Consensus 92 ~~~l~~Ga~kvvigt~a~-----~~-~~~l~~~~~--~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~--- 160 (234)
T PRK13587 92 MDYFAAGINYCIVGTKGI-----QD-TDWLKEMAH--TFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI--- 160 (234)
T ss_pred HHHHHCCCCEEEECchHh-----cC-HHHHHHHHH--HcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc---
Confidence 345678999999985522 12 222233332 3344577777642110 01122222222222221
Q ss_pred cCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEee
Q 039862 75 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVG 153 (173)
Q Consensus 75 v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG 153 (173)
.... |-|-.+-.-||..-++.+.++++.+. .++|++++|+|...+ +.+++ ..++||++||
T Consensus 161 --g~~~--ii~tdi~~dGt~~G~~~~li~~l~~~--------------~~ipvi~~GGi~s~edi~~l~-~~G~~~vivG 221 (234)
T PRK13587 161 --PLGG--IIYTDIAKDGKMSGPNFELTGQLVKA--------------TTIPVIASGGIRHQQDIQRLA-SLNVHAAIIG 221 (234)
T ss_pred --CCCE--EEEecccCcCCCCccCHHHHHHHHHh--------------CCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEh
Confidence 1233 34777888898888888876665432 248999999998865 56666 4799999999
Q ss_pred cccCChHHH
Q 039862 154 GASLKPEFI 162 (173)
Q Consensus 154 ~asl~~~f~ 162 (173)
+|-++..|.
T Consensus 222 ~a~~~~~~~ 230 (234)
T PRK13587 222 KAAHQASFW 230 (234)
T ss_pred HHHHhChhh
Confidence 997765454
No 59
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=95.20 E-value=0.049 Score=45.91 Aligned_cols=34 Identities=32% Similarity=0.652 Sum_probs=27.8
Q ss_pred eEEEcCCCCcc-cHHHHhcCCCCCEEEeecccCC-hH
Q 039862 126 RIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK-PE 160 (173)
Q Consensus 126 ~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~asl~-~~ 160 (173)
|++|||+|+.. ++++++. .+.||+.||++..+ ++
T Consensus 186 pvivGGGIrs~e~a~~~l~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 186 PLIYGGGIRSPEQARELMA-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred cEEEECCCCCHHHHHHHHH-hCCCEEEEChHHhhCHH
Confidence 99999999988 4566555 78999999998875 44
No 60
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.02 E-value=0.55 Score=42.31 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=67.9
Q ss_pred cchhhcCCCEEEE-cccccccccCCCHHHHHHHHHHHHHCCCeEEE-EeC-CCHHHHhcCChHHHHHHHHHHHHhccCCC
Q 039862 2 EMLVNLSIPWVIL-GHSERRALLNESNDFVGDKVAYALSRGLKVIA-CVG-ETLEQRESGSTVAVVAEQTKAIAEKISNW 78 (173)
Q Consensus 2 ~mLkd~G~~~vii-GHSERR~~~~E~~~~i~~Kv~~al~~gl~pIl-CvG-E~~~~r~~~~~~~~l~~Ql~~~l~~v~~~ 78 (173)
+++.++|++++.+ |=+ ++..+..=++.+.+.|+.+++ |+. ++..+ ++..+.+ .
T Consensus 75 ~~a~~aGAdgV~v~g~~--------~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e------------~~~~a~~----~ 130 (430)
T PRK07028 75 EMAAKAGADIVCILGLA--------DDSTIEDAVRAARKYGVRLMADLINVPDPVK------------RAVELEE----L 130 (430)
T ss_pred HHHHHcCCCEEEEecCC--------ChHHHHHHHHHHHHcCCEEEEEecCCCCHHH------------HHHHHHh----c
Confidence 3567888888875 311 111233335677789998887 655 33211 1222322 1
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.-.+|...|.+. +.+..+.. ...+|+... . .++||+-.|+|+++|+.+++. .++||+-+|++-.+
T Consensus 131 GaD~I~~~pg~~---~~~~~~~~----~~~l~~l~~-~------~~iPI~a~GGI~~~n~~~~l~-aGAdgv~vGsaI~~ 195 (430)
T PRK07028 131 GVDYINVHVGID---QQMLGKDP----LELLKEVSE-E------VSIPIAVAGGLDAETAAKAVA-AGADIVIVGGNIIK 195 (430)
T ss_pred CCCEEEEEeccc---hhhcCCCh----HHHHHHHHh-h------CCCcEEEECCCCHHHHHHHHH-cCCCEEEEChHHcC
Confidence 122445556442 22221211 223343321 1 248999999999999988877 68999999998775
No 61
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.98 E-value=0.071 Score=44.42 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=35.2
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChHH-HHHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF-IDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~f-~~Ii~~~ 168 (173)
.+|+.+||+|+.-+..+-+...++|++.||.+.++++| .++++.+
T Consensus 73 ~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~ 118 (228)
T PRK04128 73 GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEF 118 (228)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHc
Confidence 48999999999888655555579999999999998884 4555443
No 62
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.97 E-value=0.47 Score=38.91 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=26.7
Q ss_pred cceEEEcCCCCc-ccHHHHhcCCCCCEEEeeccc
Q 039862 124 STRIIYGGSVNG-ANCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 124 ~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~as 156 (173)
++||+++|+|+. +.+.+++...++||+.+|+|-
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 589999999985 445665777899999999873
No 63
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.96 E-value=0.37 Score=40.95 Aligned_cols=45 Identities=29% Similarity=0.452 Sum_probs=36.8
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
++||+..|+| +++++.+++. .+.|++.+|++.+. |. |.+|.+...
T Consensus 231 ~ipii~~GGI~~~~da~~~l~-~GAd~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLM-AGASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCEEEEchhhhcChHHHHHHHHHHH
Confidence 5899998888 6788999986 78999999999886 77 777666553
No 64
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.93 E-value=0.18 Score=43.93 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=37.4
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-ChH-HHHHHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-KPE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~~~-f~~Ii~~~ 168 (173)
++||++-|.| +++.+.+++...++|||.||++.+ +|. |.+|-+..
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~ 241 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL 241 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHH
Confidence 5999997777 777889999889999999999999 587 77775543
No 65
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.75 E-value=0.094 Score=42.02 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 98 TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 98 ~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
+|++++++++.++.. ..++.+.--|+||++|+.++.. .+||.+-+|+.-.+
T Consensus 110 ~~~~~~~~v~~l~~~---------~~~v~ie~SGGI~~~ni~~ya~-~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 110 SPEDLKEAVEELREL---------NPRVKIEASGGITLENIAEYAK-TGVDVISVGSLTHS 160 (169)
T ss_dssp CHHHHHHHHHHHHHH---------TTTSEEEEESSSSTTTHHHHHH-TT-SEEEECHHHHS
T ss_pred CHHHHHHHHHHHhhc---------CCcEEEEEECCCCHHHHHHHHh-cCCCEEEcChhhcC
Confidence 899999999998765 4458999999999999999996 78999999986444
No 66
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=94.62 E-value=0.14 Score=44.64 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=28.8
Q ss_pred cceEE--EcCCC-CcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRII--YGGSV-NGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~il--YGGSV-~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+||+ -=|+| +|+|+..++. .++||++||++-++
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~k 239 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFK 239 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhc
Confidence 48887 66667 9999999996 89999999999873
No 67
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.52 E-value=0.12 Score=42.65 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=34.6
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCChH--HHHHHHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLKPE--FIDIIKS 167 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~~~--f~~Ii~~ 167 (173)
++|+++.|+|+ ++.+.++++..++||+++|++-++.. +.++.+.
T Consensus 193 ~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~ 239 (243)
T cd04731 193 NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEY 239 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHH
Confidence 59999999885 67889999988999999999977632 5544443
No 68
>PRK08005 epimerase; Validated
Probab=94.39 E-value=1.4 Score=36.54 Aligned_cols=132 Identities=15% Similarity=0.225 Sum_probs=82.0
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+.+.++|++++.+ |.|-- ....+-++...++|+++=+-+.=.. ..+ .+...++.++ .=+
T Consensus 75 ~~~~~~gad~It~-H~Ea~-------~~~~~~l~~Ik~~G~k~GlAlnP~T-------p~~----~i~~~l~~vD--~Vl 133 (210)
T PRK08005 75 PWLAAIRPGWIFI-HAESV-------QNPSEILADIRAIGAKAGLALNPAT-------PLL----PYRYLALQLD--ALM 133 (210)
T ss_pred HHHHHhCCCEEEE-cccCc-------cCHHHHHHHHHHcCCcEEEEECCCC-------CHH----HHHHHHHhcC--EEE
Confidence 3567889987755 87732 2234456788888998766554321 111 2233444433 235
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-H
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-E 160 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~-~ 160 (173)
+..-||-.+ |+..-|+-.+++ +.+|++. . ...|--=|+||.+|+..+.. .|+|.+.+|++-.+. +
T Consensus 134 vMsV~PGf~---GQ~f~~~~~~KI-~~l~~~~----~-----~~~I~VDGGI~~~~i~~l~~-aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 134 IMTSEPDGR---GQQFIAAMCEKV-SQSREHF----P-----AAECWADGGITLRAARLLAA-AGAQHLVIGRALFTTAN 199 (210)
T ss_pred EEEecCCCc---cceecHHHHHHH-HHHHHhc----c-----cCCEEEECCCCHHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 677899664 666656555553 2334432 1 12488899999999887665 899999999876653 4
Q ss_pred HHHHHHHH
Q 039862 161 FIDIIKSA 168 (173)
Q Consensus 161 f~~Ii~~~ 168 (173)
+.+.++.+
T Consensus 200 ~~~~~~~~ 207 (210)
T PRK08005 200 YDVTLSQF 207 (210)
T ss_pred HHHHHHHH
Confidence 66655544
No 69
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=94.36 E-value=0.087 Score=45.01 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=38.7
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-----hH-HHHHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-----PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-----~~-f~~Ii~~~ 168 (173)
++|+.+||+|+.+++++++. .++|-+.||++.++ ++ |.++++.+
T Consensus 76 ~~~v~vGGGIr~e~v~~~l~-aGa~rVvIGS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 76 PGGLQVGGGINDTNAQEWLD-EGASHVIVTSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred CCCEEEeCCcCHHHHHHHHH-cCCCEEEECcHHHhCCCCCHHHHHHHHHHh
Confidence 48999999999999999998 99999999998875 56 78888776
No 70
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.31 E-value=0.08 Score=43.57 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=33.7
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKS 167 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~ 167 (173)
++|++++|+|+ ++++.++ ...++||++||++.+. +. |.+.++.
T Consensus 193 ~iPvia~GGI~~~~di~~~-~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRAL-KEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred CCCEEEeCCCCCHHHHHHH-HHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 49999999999 6777775 6689999999999887 33 5555443
No 71
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.20 E-value=0.13 Score=42.56 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=36.5
Q ss_pred cceEEEcCCCCcc-cHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 124 STRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
++||++||+|..- .+.+++. .++|++.+|++.+. |+ |.+|++.+.
T Consensus 71 ~~pv~~~GGI~s~~d~~~~l~-~G~~~v~ig~~~~~~p~~~~~i~~~~~ 118 (243)
T cd04731 71 FIPLTVGGGIRSLEDARRLLR-AGADKVSINSAAVENPELIREIAKRFG 118 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-cCCceEEECchhhhChHHHHHHHHHcC
Confidence 4899999999975 4666665 68999999999885 77 888888763
No 72
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.19 E-value=0.17 Score=41.49 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=51.5
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
..+++ =++-..|++..++.+.++++.+. -++|++|||++..-+..+-+...++|++.+|++.++
T Consensus 45 ~~i~i--~dl~~~~~~~~~n~~~~~~i~~~--------------~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 45 DELIV--LDIDASKRGREPLFELISNLAEE--------------CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred CEEEE--EeCCCcccCCCCCHHHHHHHHHh--------------CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 44444 36777888887766554443222 148999999999876544445569999999999986
Q ss_pred -hH-HHHHHHHH
Q 039862 159 -PE-FIDIIKSA 168 (173)
Q Consensus 159 -~~-f~~Ii~~~ 168 (173)
++ +.++++.+
T Consensus 109 ~~~~~~~~~~~~ 120 (232)
T TIGR03572 109 NPDLIEEAARRF 120 (232)
T ss_pred CHHHHHHHHHHc
Confidence 66 67777654
No 73
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=94.13 E-value=0.095 Score=43.74 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=49.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 87 PVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 87 PvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
|+-|.||-.-+++|.+..+... ..-|++-||+|.+...-+++...+|+|+|||.|-++
T Consensus 158 Di~aVGt~~G~~~E~l~~~~~~--------------s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 158 DIGAVGTKSGPDYELLTKVLEL--------------SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred EccccccccCCCHHHHHHHHHh--------------ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 8999999998889887664433 135699999999999999999999999999998776
No 74
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=93.74 E-value=0.076 Score=44.03 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=40.4
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl 157 (173)
..++ |=-+-.-||+.=++.+-+++ +++.. ++|++|+|+|.. +...++. ..++||+++|+|-+
T Consensus 162 ~~ii--~tdi~~dGt~~G~d~~~~~~----l~~~~----------~~~viasGGv~~~~Dl~~l~-~~G~~gvivg~al~ 224 (229)
T PF00977_consen 162 GEII--LTDIDRDGTMQGPDLELLKQ----LAEAV----------NIPVIASGGVRSLEDLRELK-KAGIDGVIVGSALH 224 (229)
T ss_dssp SEEE--EEETTTTTTSSS--HHHHHH----HHHHH----------SSEEEEESS--SHHHHHHHH-HTTECEEEESHHHH
T ss_pred cEEE--EeeccccCCcCCCCHHHHHH----HHHHc----------CCCEEEecCCCCHHHHHHHH-HCCCcEEEEehHhh
Confidence 4444 45677888888777655443 33331 599999999965 5555555 79999999998743
No 75
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.73 E-value=0.095 Score=45.96 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=35.2
Q ss_pred ceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHH
Q 039862 125 TRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDI 164 (173)
Q Consensus 125 i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~I 164 (173)
+||+.-|+| +++.+.+.+...++|||+||++++. |. |..|
T Consensus 199 ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 199 IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 899999998 5666899999999999999999985 77 8776
No 76
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=93.61 E-value=0.12 Score=42.92 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=41.8
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 85 YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 85 YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
|==+-.-||+.-++.+.++++.+. .++|+++||+|..-....-+...++||+++|+|-+
T Consensus 159 ~tdI~~dGt~~G~d~eli~~i~~~--------------~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 159 VLDIHSVGTMKGPNLELLTKTLEL--------------SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVH 217 (221)
T ss_pred EEECCccccCCCCCHHHHHHHHhh--------------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence 345666788888887766654332 24899999999877544334457999999999854
No 77
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=93.60 E-value=0.19 Score=41.00 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=37.6
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
.+|+++||+|......+-+...++|.+++|.+.++ ++ |.++.+.+.
T Consensus 72 ~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g 119 (230)
T TIGR00007 72 GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYG 119 (230)
T ss_pred CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhC
Confidence 48999999999866655555689999999999986 55 888888774
No 78
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.57 E-value=0.18 Score=42.60 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=45.0
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhcCCCCCEEEeecccC
Q 039862 83 LAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 83 IAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~asl 157 (173)
|.|-.+-.-||..-++.+.++++.+. .++||+++|+|... .+.++++..++||+++|+|-+
T Consensus 169 ii~~~i~~~G~~~G~d~~~i~~~~~~--------------~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 169 ILLNSIDRDGTMKGYDLELLKSFRNA--------------LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred EEEEccCCCCCcCCCCHHHHHHHHhh--------------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceee
Confidence 44667777787776776666554322 25999999998874 567777678999999999865
No 79
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=93.53 E-value=0.16 Score=42.63 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=35.8
Q ss_pred cceEEEcCCCCccc-HHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 124 STRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
++|+++||+|...+ +++++. .++|++.||++.+. |+ |.++.+.+.
T Consensus 74 ~~pv~~~GGi~s~~d~~~~~~-~Ga~~vivgt~~~~~p~~~~~~~~~~~ 121 (254)
T TIGR00735 74 FIPLTVGGGIKSIEDVDKLLR-AGADKVSINTAAVKNPELIYELADRFG 121 (254)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCEEEEChhHhhChHHHHHHHHHcC
Confidence 48999999999665 555655 78999999999985 77 777776653
No 80
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=93.06 E-value=0.37 Score=38.20 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=47.0
Q ss_pred CCeEEEEcccccccCCCCC----CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeec
Q 039862 79 DNVVLAYEPVWAIGTGKVA----TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a----~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~ 154 (173)
.-.+|..-|+..-++-..+ .++.++++.+. ..++||+-.|+++++|+.+++. .++||+-+|+
T Consensus 116 g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~-------------~~~~pv~a~GGI~~~~~~~~~~-~G~~gva~~~ 181 (196)
T TIGR00693 116 GADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT-------------SIDIPIVAIGGITLENAAEVLA-AGADGVAVVS 181 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-------------cCCCCEEEECCcCHHHHHHHHH-cCCCEEEEhH
Confidence 4467888899887764432 33433332211 1248899999999999998885 7999999999
Q ss_pred ccCC
Q 039862 155 ASLK 158 (173)
Q Consensus 155 asl~ 158 (173)
+-++
T Consensus 182 ~i~~ 185 (196)
T TIGR00693 182 AIMQ 185 (196)
T ss_pred HhhC
Confidence 9886
No 81
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=92.93 E-value=0.24 Score=41.83 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=29.5
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.++|++|||+++...-..-+...|-|-+.||.+--+
T Consensus 181 ~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 181 SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 579999999999988777777799999999998664
No 82
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.90 E-value=3.4 Score=35.39 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=33.5
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC-hHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-PEF 161 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~-~~f 161 (173)
++||+.+|++. ++++.+++...++|.+.+|++.+. |+|
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l 320 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDL 320 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccH
Confidence 48999999997 888999999889999999998884 774
No 83
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.78 E-value=0.17 Score=40.95 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=35.0
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDII 165 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii 165 (173)
++||++.|+| +++.+.+++...++||+.+|++.+. |. |.++-
T Consensus 183 ~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~ 227 (231)
T cd02801 183 SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIK 227 (231)
T ss_pred CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhh
Confidence 5999999998 6777899998889999999998885 77 65543
No 84
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.75 E-value=0.92 Score=38.60 Aligned_cols=129 Identities=18% Similarity=0.287 Sum_probs=78.6
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHH-------hcCChHHHHHHHHHHHHhc
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQR-------ESGSTVAVVAEQTKAIAEK 74 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r-------~~~~~~~~l~~Ql~~~l~~ 74 (173)
+.|.++|+++|++|-.=- ++-+.+ -+.+.+.|=.+++=+.--...- .++-+...+.+++...
T Consensus 91 ~~ll~~G~~rViiGt~av-----~~p~~v---~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~--- 159 (241)
T COG0106 91 EALLDAGVARVIIGTAAV-----KNPDLV---KELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEV--- 159 (241)
T ss_pred HHHHHCCCCEEEEeccee-----cCHHHH---HHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhc---
Confidence 568899999999997752 222333 3455667766666654332111 1222333333443332
Q ss_pred cCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCC-CCCEEEee
Q 039862 75 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQP-DVDGFLVG 153 (173)
Q Consensus 75 v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~-~vDG~LiG 153 (173)
....++ |--+-==||-.=++.+-..+..+.. ++|++|-|+|..-+.-+.+... +++|+.||
T Consensus 160 --g~~~ii--~TdI~~DGtl~G~n~~l~~~l~~~~--------------~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG 221 (241)
T COG0106 160 --GLAHIL--YTDISRDGTLSGPNVDLVKELAEAV--------------DIPVIASGGVSSLDDIKALKELSGVEGVIVG 221 (241)
T ss_pred --CCCeEE--EEecccccccCCCCHHHHHHHHHHh--------------CcCEEEecCcCCHHHHHHHHhcCCCcEEEEe
Confidence 133443 3333333444446666655544432 4999999999999988888888 79999999
Q ss_pred cccCCh
Q 039862 154 GASLKP 159 (173)
Q Consensus 154 ~asl~~ 159 (173)
+|-+..
T Consensus 222 ~ALy~g 227 (241)
T COG0106 222 RALYEG 227 (241)
T ss_pred hHHhcC
Confidence 997653
No 85
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=92.71 E-value=4.1 Score=34.29 Aligned_cols=133 Identities=22% Similarity=0.227 Sum_probs=71.7
Q ss_pred cchhhcCCCEEEEc---cccc-cccc-CCCHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILG---HSER-RALL-NESNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTKAIA 72 (173)
Q Consensus 2 ~mLkd~G~~~viiG---HSER-R~~~-~E~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~~~l 72 (173)
+.||++|++.+.+| +.|- +... +-+-+...+-++.+.++|+.. |+-.||+.++.. .-+. .+
T Consensus 127 ~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~---------~~~~-~l 196 (296)
T TIGR00433 127 KRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRI---------GLAL-AL 196 (296)
T ss_pred HHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHH---------HHHH-HH
Confidence 46899999998775 2221 1122 234455556688899999985 455677765432 1111 11
Q ss_pred hccCCCCCe-EEEEcccccccCC----CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCC-CCcccHHHH-hcCC
Q 039862 73 EKISNWDNV-VLAYEPVWAIGTG----KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS-VNGANCKEL-AAQP 145 (173)
Q Consensus 73 ~~v~~~~~i-iIAYEPvwAIGtG----~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS-V~~~n~~~~-~~~~ 145 (173)
..+.. ..+ +-.+=|.- ||- .++++++.-+++...|..+.. ..+ -+-||. +.-.+.... +-..
T Consensus 197 ~~l~~-~~i~l~~l~p~~--gT~l~~~~~~s~~~~~~~ia~~r~~lp~-------~~i-~~~~~~~~~~~~~~~~~~l~~ 265 (296)
T TIGR00433 197 ANLPP-ESVPINFLVKIK--GTPLADNKELSADDALKTIALARIIMPK-------AEI-RLAGGREVNMRELQQAMCFMA 265 (296)
T ss_pred HhCCC-CEEEeeeeEEcC--CCccCCCCCCCHHHHHHHHHHHHHHCCc-------ceE-EEeCCcchhhhhhHHHHHHHh
Confidence 11111 111 11122321 332 246777877888888877521 224 234444 344444333 5567
Q ss_pred CCCEEEeecc
Q 039862 146 DVDGFLVGGA 155 (173)
Q Consensus 146 ~vDG~LiG~a 155 (173)
|+|++++|+-
T Consensus 266 G~n~i~~g~~ 275 (296)
T TIGR00433 266 GANSIFVGDY 275 (296)
T ss_pred cCceEEEcCc
Confidence 8999999764
No 86
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=92.70 E-value=0.3 Score=41.45 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=97.0
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHH-HCCCeEEEEeCCCHHH------------HhcCChHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL-SRGLKVIACVGETLEQ------------RESGSTVAVVAEQT 68 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al-~~gl~pIlCvGE~~~~------------r~~~~~~~~l~~Ql 68 (173)
+.+.+.|-+.+|||-|-- =+.+.+.+-+++.. +.++..|+-.|..... .++.+..-++-.|+
T Consensus 35 ~~~~~~GTDaImIGGS~g-----vt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~gaq~ 109 (240)
T COG1646 35 EAAAEAGTDAIMIGGSDG-----VTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGAQV 109 (240)
T ss_pred HHHHHcCCCEEEECCccc-----ccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCCCcccccchhh
Confidence 457789999999998853 22233444456666 8899999999987632 14444555555665
Q ss_pred HHHHh--cc--CCCCCeEEEEccccccc----CC-CCCCHHHHHHHHHHHHHHHHhcc-----ch------------hhc
Q 039862 69 KAIAE--KI--SNWDNVVLAYEPVWAIG----TG-KVATPAQAQEVHAELRKWLKDNV-----SA------------EVA 122 (173)
Q Consensus 69 ~~~l~--~v--~~~~~iiIAYEPvwAIG----tG-~~a~~e~i~~~~~~Ir~~~~~~~-----~~------------~~~ 122 (173)
..+.. .. .....=+|-.+|--..| .- .+.+.+++......--+++.-.. |. ..-
T Consensus 110 ~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~ 189 (240)
T COG1646 110 EGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVL 189 (240)
T ss_pred hhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhh
Confidence 44321 10 01122344456654444 22 23455555444333322221000 00 001
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
...+++|||+|.....+.-+...+-|-+.+|...-+ ++ |.+++....
T Consensus 190 ~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~~~k 238 (240)
T COG1646 190 SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVEAIK 238 (240)
T ss_pred ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHHHHhh
Confidence 234899999999999877777789999999998875 55 888887654
No 87
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=92.58 E-value=0.25 Score=40.83 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=29.4
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHH-CCCeEEEEeCCCH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALS-RGLKVIACVGETL 52 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~-~gl~pIlCvGE~~ 52 (173)
+++.+.|.+.++||=|- +=+.+.+.+-+++..+ .++-.|+-.|...
T Consensus 18 ~~v~~~gtDaI~VGGS~-----gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 18 KNAKDAGTDAIMVGGSL-----GIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHhcCCCEEEEcCcC-----CCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 46789999999998661 2233444444666666 4566666666654
No 88
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.45 E-value=0.33 Score=40.50 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=43.5
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhc--CCCCCEEEeecccCC
Q 039862 83 LAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAA--QPDVDGFLVGGASLK 158 (173)
Q Consensus 83 IAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~--~~~vDG~LiG~asl~ 158 (173)
|.|=++-.-|+..-++.+.+.++.+. .++|++++|+|..-+ +.++.+ ..++||+++|++.+.
T Consensus 163 iiv~~~~~~g~~~G~d~~~i~~i~~~--------------~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 163 YVVTDVTKDGTLTGPNLELLREVCAR--------------TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred EEEEeecCCCCccCCCHHHHHHHHhh--------------CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 34557777787776665555554321 248999988887754 555543 469999999999886
No 89
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=92.41 E-value=0.3 Score=39.85 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=34.7
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
.+|+++||+|......+.+...++|++.+|.+.++ ++ +.++++.+
T Consensus 74 ~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 74 DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF 120 (233)
T ss_pred CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh
Confidence 48999999999865444444468999999999997 55 77777765
No 90
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.40 E-value=0.45 Score=39.04 Aligned_cols=124 Identities=22% Similarity=0.304 Sum_probs=73.2
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+.++++|++++ .=|.|-- +.+.+-++...++|+++=+.+.=.... +.+..++..++ .=+
T Consensus 74 ~~~~~~g~~~i-~~H~E~~-------~~~~~~i~~ik~~g~k~GialnP~T~~-----------~~~~~~l~~vD--~Vl 132 (201)
T PF00834_consen 74 EEFAEAGADYI-TFHAEAT-------EDPKETIKYIKEAGIKAGIALNPETPV-----------EELEPYLDQVD--MVL 132 (201)
T ss_dssp HHHHHHT-SEE-EEEGGGT-------TTHHHHHHHHHHTTSEEEEEE-TTS-G-----------GGGTTTGCCSS--EEE
T ss_pred HHHHhcCCCEE-EEcccch-------hCHHHHHHHHHHhCCCEEEEEECCCCc-----------hHHHHHhhhcC--EEE
Confidence 45788999966 4488831 234455788888999987666432110 11223343332 114
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeeccc
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~as 156 (173)
+..-||= .+|+...|+..++ ++.+|+...+. +.++.|.-=|+|+.+|+..+.. .|+|.+.+|++-
T Consensus 133 vMsV~PG---~~Gq~f~~~~~~K-I~~l~~~~~~~-----~~~~~I~vDGGI~~~~~~~~~~-aGad~~V~Gs~i 197 (201)
T PF00834_consen 133 VMSVEPG---FGGQKFIPEVLEK-IRELRKLIPEN-----GLDFEIEVDGGINEENIKQLVE-AGADIFVAGSAI 197 (201)
T ss_dssp EESS-TT---TSSB--HGGHHHH-HHHHHHHHHHH-----TCGSEEEEESSESTTTHHHHHH-HT--EEEESHHH
T ss_pred EEEecCC---CCcccccHHHHHH-HHHHHHHHHhc-----CCceEEEEECCCCHHHHHHHHH-cCCCEEEECHHH
Confidence 5566772 3677765655554 45556555432 3568899999999999888875 899999999764
No 91
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.20 E-value=0.49 Score=41.07 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
..+|+++++++..+|+. ..++++.-=|+|+.+|+.+++. .|+|++-+|+.-++
T Consensus 224 n~~~e~l~~av~~~~~~---------~~~i~leAsGGIt~~ni~~ya~-tGvD~Isvgsl~~s 276 (288)
T PRK07428 224 NMPVDLMQQAVQLIRQQ---------NPRVKIEASGNITLETIRAVAE-TGVDYISSSAPITR 276 (288)
T ss_pred CCCHHHHHHHHHHHHhc---------CCCeEEEEECCCCHHHHHHHHH-cCCCEEEEchhhhC
Confidence 57899999999887653 3468899999999999999985 89999999997765
No 92
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=92.06 E-value=0.07 Score=46.27 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=30.1
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC-hH-HHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-PE-FID 163 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~ 163 (173)
++||++-|.|+ .+.+.++++..++||++||++++. |- |..
T Consensus 183 ~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 183 PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH
T ss_pred cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh
Confidence 39999966555 566888888889999999999986 76 764
No 93
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.93 E-value=0.41 Score=38.63 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=48.3
Q ss_pred EEcccccccCCCCCCHHHHHHHH------------------HHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCC
Q 039862 84 AYEPVWAIGTGKVATPAQAQEVH------------------AELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQP 145 (173)
Q Consensus 84 AYEPvwAIGtG~~a~~e~i~~~~------------------~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~ 145 (173)
++++.+.+| +.+++++.+.. ..++++..- ..++|++==|+|+++|+.++++ .
T Consensus 103 ~~~~~~i~G---~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~------~~~ipvvaiGGI~~~n~~~~l~-a 172 (187)
T PRK07455 103 AQDIPIIPG---ALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGP------LGHIPLIPTGGVTLENAQAFIQ-A 172 (187)
T ss_pred HcCCCEEcC---cCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhh------CCCCcEEEeCCCCHHHHHHHHH-C
Confidence 455567787 56788876655 344444221 2259999999999999999999 8
Q ss_pred CCCEEEeecccCC
Q 039862 146 DVDGFLVGGASLK 158 (173)
Q Consensus 146 ~vDG~LiG~asl~ 158 (173)
++||+-+|++-++
T Consensus 173 Ga~~vav~s~i~~ 185 (187)
T PRK07455 173 GAIAVGLSGQLFP 185 (187)
T ss_pred CCeEEEEehhccc
Confidence 9999999998665
No 94
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.87 E-value=0.53 Score=39.67 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=49.9
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl 157 (173)
..++|+ =+-+.|++..++.+.++++.+. ..+|+++||++.. +.+++++ ..++|++.||++.+
T Consensus 45 ~~l~i~--Dl~~~~~~~~~n~~~i~~i~~~--------------~~~pv~~gGGi~s~~d~~~l~-~~G~~~vvigs~~~ 107 (258)
T PRK01033 45 DELIVL--DIDASKRGSEPNYELIENLASE--------------CFMPLCYGGGIKTLEQAKKIF-SLGVEKVSINTAAL 107 (258)
T ss_pred CEEEEE--ECCCCcCCCcccHHHHHHHHHh--------------CCCCEEECCCCCCHHHHHHHH-HCCCCEEEEChHHh
Confidence 344443 3456777776665555543332 2489999999955 4456666 56999999999888
Q ss_pred C-hH-HHHHHHHHh
Q 039862 158 K-PE-FIDIIKSAT 169 (173)
Q Consensus 158 ~-~~-f~~Ii~~~~ 169 (173)
. ++ +.++++.+.
T Consensus 108 ~~~~~~~~~~~~~~ 121 (258)
T PRK01033 108 EDPDLITEAAERFG 121 (258)
T ss_pred cCHHHHHHHHHHhC
Confidence 6 66 777877663
No 95
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.49 E-value=1.8 Score=36.95 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=36.0
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
++||+.-|+| +++.+.+++. .+.|++.+|++.+. |. |.+|.+..
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIM-AGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 5899998888 6777888886 78999999999885 77 77766654
No 96
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.32 E-value=1.5 Score=38.21 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=28.3
Q ss_pred cceEE--EcCCC-CcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRII--YGGSV-NGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~il--YGGSV-~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+||+ -=|+| +|+|+..++. .++||++||++-++
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~k 233 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 233 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhc
Confidence 48887 44556 9999998887 89999999998874
No 97
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.90 E-value=0.9 Score=37.87 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=33.5
Q ss_pred cceEEEcCCCCcc-cHHHHhcCCCCCEEEeecccCCh--HHHHHHHHH
Q 039862 124 STRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLKP--EFIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~asl~~--~f~~Ii~~~ 168 (173)
++|+++.|+|..- .+.+++...++||+++|+|-+.. .+.++.+.+
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~ 244 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYL 244 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHH
Confidence 5899998888874 56777877899999999996652 255544444
No 98
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.84 E-value=0.49 Score=39.47 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=35.7
Q ss_pred cceEEEcCCCCccc-HHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 124 STRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
++|+..||+|.... +++++. .++|++.+|++.+. |+ |.+|.+.+
T Consensus 74 ~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 74 FIPLTVGGGIRSVEDARRLLR-AGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 48999999998555 566666 78999999998885 77 88887775
No 99
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.83 E-value=0.4 Score=41.47 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=35.4
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccC-ChH-HHHHHHHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASL-KPE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl-~~~-f~~Ii~~~ 168 (173)
++||++-|+|. ++.+.+++...++||+.+|++.+ +|. |.++-+..
T Consensus 192 ~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~ 239 (319)
T TIGR00737 192 RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYL 239 (319)
T ss_pred CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHH
Confidence 48999977775 55688888889999999999998 477 77665433
No 100
>PRK06256 biotin synthase; Validated
Probab=90.76 E-value=4.2 Score=35.11 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=74.0
Q ss_pred cchhhcCCCEEEEcc--ccc-cccc--CCCHHHHHHHHHHHHHCCCeEEEE----eCCCHHHHhcCChHHHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGH--SER-RALL--NESNDFVGDKVAYALSRGLKVIAC----VGETLEQRESGSTVAVVAEQTKAIA 72 (173)
Q Consensus 2 ~mLkd~G~~~viiGH--SER-R~~~--~E~~~~i~~Kv~~al~~gl~pIlC----vGE~~~~r~~~~~~~~l~~Ql~~~l 72 (173)
+.|+++|++.+.+|- |++ +..+ +.+-+..-+-++.+.+.|+.+..+ .||+.+++. . +-..+
T Consensus 156 ~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~---------~-~~~~l 225 (336)
T PRK06256 156 ERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRV---------E-HAFFL 225 (336)
T ss_pred HHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHH---------H-HHHHH
Confidence 468999999887742 221 1111 235556667788999999864211 467766543 1 11122
Q ss_pred hccCCCCCeEE-EEcc--cccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceE-EEcCC-CCcccHHHHhcCCCC
Q 039862 73 EKISNWDNVVL-AYEP--VWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRI-IYGGS-VNGANCKELAAQPDV 147 (173)
Q Consensus 73 ~~v~~~~~iiI-AYEP--vwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~i-lYGGS-V~~~n~~~~~~~~~v 147 (173)
..+.. ..+.+ -+=| -.-...-.+++++++.+++...|-.+ .+..| +-||- +...+...+.- .++
T Consensus 226 ~~l~~-~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~---------p~~~I~~~~gr~~~~~~~~~~~~-~g~ 294 (336)
T PRK06256 226 KELDA-DSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLIN---------PDKEIRIAGGREVNLRSLQPLGL-GGA 294 (336)
T ss_pred HhCCC-CEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCeeEecCchhhhchhhHHHHh-ccC
Confidence 22221 11111 1222 11122223478888888888888764 23444 44776 55566544444 599
Q ss_pred CEEEeecc
Q 039862 148 DGFLVGGA 155 (173)
Q Consensus 148 DG~LiG~a 155 (173)
+|+++|+-
T Consensus 295 ~~~~~g~~ 302 (336)
T PRK06256 295 NSVIVGNY 302 (336)
T ss_pred ceeeECCc
Confidence 99999986
No 101
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.75 E-value=2 Score=31.83 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=51.4
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++.+|++- ..+.+...+.++.+.||+. ..+++|+.||..-..+..+++..+.+|-+..|-.-
T Consensus 39 ~pdiv~~S-------~~~~~~~~~~~~~~~ik~~---------~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE-- 100 (127)
T cd02068 39 KPDVVGIS-------LMTSAIYEALELAKIAKEV---------LPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE-- 100 (127)
T ss_pred CCCEEEEe-------eccccHHHHHHHHHHHHHH---------CCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH--
Confidence 45566663 3344555666777777765 34699999998877777776778899999999762
Q ss_pred hHHHHHHHHHhh
Q 039862 159 PEFIDIIKSATV 170 (173)
Q Consensus 159 ~~f~~Ii~~~~~ 170 (173)
..|.++++....
T Consensus 101 ~~~~~l~~~l~~ 112 (127)
T cd02068 101 ETFLKLLEELEE 112 (127)
T ss_pred HHHHHHHHHHHc
Confidence 237777776543
No 102
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=90.65 E-value=1.6 Score=35.48 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=49.3
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeeccc
Q 039862 78 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~as 156 (173)
...+.|+....+ .+|...+.+.+.+ |++. ..+|++.||+|+.-. +++++. .++|.+++|++.
T Consensus 43 ~d~l~v~dl~~~--~~~~~~~~~~i~~----i~~~----------~~~pv~~~GgI~~~e~~~~~~~-~Gad~vvigs~~ 105 (234)
T cd04732 43 AKWLHVVDLDGA--KGGEPVNLELIEE----IVKA----------VGIPVQVGGGIRSLEDIERLLD-LGVSRVIIGTAA 105 (234)
T ss_pred CCEEEEECCCcc--ccCCCCCHHHHHH----HHHh----------cCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECchH
Confidence 456777766543 2344444444443 3332 148999999998844 566664 789999999999
Q ss_pred CC-hH-HHHHHHHH
Q 039862 157 LK-PE-FIDIIKSA 168 (173)
Q Consensus 157 l~-~~-f~~Ii~~~ 168 (173)
+. ++ |.++.+.+
T Consensus 106 l~dp~~~~~i~~~~ 119 (234)
T cd04732 106 VKNPELVKELLKEY 119 (234)
T ss_pred HhChHHHHHHHHHc
Confidence 86 66 77777765
No 103
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=90.57 E-value=0.55 Score=40.38 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=37.6
Q ss_pred ceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-----hH-HHHHHHHH
Q 039862 125 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-----PE-FIDIIKSA 168 (173)
Q Consensus 125 i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-----~~-f~~Ii~~~ 168 (173)
+||.|||+|+.+.++.+++ .++|=+.||+++++ |+ +.++++.+
T Consensus 84 ~~vqvGGGIR~e~i~~~l~-~Ga~rViigT~Av~~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 84 GGLQVGGGVNSENAMSYLD-AGASHVIVTSYVFRDGQIDLERLKDLVRLV 132 (262)
T ss_pred CCEEEeCCccHHHHHHHHH-cCCCEEEEchHHHhCCCCCHHHHHHHHHHh
Confidence 8999999999988888887 89999999998885 77 77788776
No 104
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=90.42 E-value=0.48 Score=39.86 Aligned_cols=60 Identities=8% Similarity=-0.035 Sum_probs=42.9
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHH--hcCCCCCEEEeecccCC
Q 039862 85 YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKEL--AAQPDVDGFLVGGASLK 158 (173)
Q Consensus 85 YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~--~~~~~vDG~LiG~asl~ 158 (173)
|=-+---||..=++.+.++++ ++. .++|++|+|+|..-. ..++ +...++||+++|+|-++
T Consensus 168 ~tdI~~dGt~~G~d~~l~~~l----~~~----------~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~ 230 (243)
T TIGR01919 168 VTDSKKDGLSGGPNELLLEVV----AAR----------TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYA 230 (243)
T ss_pred EEecCCcccCCCcCHHHHHHH----Hhh----------CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHc
Confidence 566778888888887766553 222 258999999999754 4444 22459999999998665
No 105
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=90.22 E-value=0.88 Score=35.25 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=33.2
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hHHHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 166 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~f~~Ii~ 166 (173)
++||+--|+++++|+.+++. .++||+.+|++-++ ++..+.++
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~-~Ga~~i~~g~~i~~~~~~~~~~~ 192 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA-AGADGVAVISAITGADDPAAAAR 192 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH-cCCCEEEEehHhhcCCCHHHHHH
Confidence 48899899999999999887 68999999998775 33443333
No 106
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.96 E-value=0.72 Score=37.90 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=36.1
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
++|++.||+++.-...+.+-..++|++.+|.+.++ ++ |.++.+.+
T Consensus 76 ~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 76 GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHh
Confidence 48999999999765545555689999999999985 66 78887776
No 107
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=89.88 E-value=0.62 Score=39.85 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=45.5
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
...+|...|.+ |++++++++.++ .++|+.-=|+||++|+.+++. .++||+-+|+..++
T Consensus 202 gaDyI~ld~~~---------~e~l~~~~~~~~------------~~ipi~AiGGI~~~ni~~~a~-~Gvd~Iav~sl~~~ 259 (268)
T cd01572 202 GADIIMLDNMS---------PEELREAVALLK------------GRVLLEASGGITLENIRAYAE-TGVDYISVGALTHS 259 (268)
T ss_pred CCCEEEECCcC---------HHHHHHHHHHcC------------CCCcEEEECCCCHHHHHHHHH-cCCCEEEEEeeecC
Confidence 34578888763 777777665542 148899999999999999986 89999999987664
No 108
>PRK08508 biotin synthase; Provisional
Probab=89.85 E-value=7.7 Score=33.01 Aligned_cols=135 Identities=14% Similarity=0.127 Sum_probs=81.3
Q ss_pred cchhhcCCCEEEEcccccccccCC-----CHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNE-----SNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTKAIA 72 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E-----~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~~~l 72 (173)
+.|+++|++.+-+|.-=++.+|.. +-+.+-+-++.|.+.|+.+ |+=.||+.+++. +-+ ..+
T Consensus 106 ~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~---------~~l-~~l 175 (279)
T PRK08508 106 KELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRI---------SFL-KSL 175 (279)
T ss_pred HHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHH---------HHH-HHH
Confidence 468899999888775445544433 3344555667799999977 777889887753 111 122
Q ss_pred hccCCCCCeEEE---EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCC--CcccHHHHhcCCCC
Q 039862 73 EKISNWDNVVLA---YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV--NGANCKELAAQPDV 147 (173)
Q Consensus 73 ~~v~~~~~iiIA---YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV--~~~n~~~~~~~~~v 147 (173)
..+.. +.+-+- .-|-+..+ ..++++++.-.++..-|-.+ .+..|-+.|+. ..+....++-..|+
T Consensus 176 r~L~~-~svpl~~~~p~~~t~~~-~~~~~~~~~lr~iAv~Rl~l---------p~~~i~~~~gr~~~~~~~~~~~~~~g~ 244 (279)
T PRK08508 176 ASLSP-HSTPINFFIPNPALPLK-APTLSADEALEIVRLAKEAL---------PNARLMVAGGREVVFGERQYEIFEAGA 244 (279)
T ss_pred HcCCC-CEEeeCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHC---------CCceeeecCChhhhchhhHHHHHhcCC
Confidence 22221 101111 22223222 23478999999998888764 23556665544 33344666667899
Q ss_pred CEEEeecccCC
Q 039862 148 DGFLVGGASLK 158 (173)
Q Consensus 148 DG~LiG~asl~ 158 (173)
||+++|+- |+
T Consensus 245 n~~~~g~~-lt 254 (279)
T PRK08508 245 NAIVIGDY-LT 254 (279)
T ss_pred cceeecCc-cc
Confidence 99999985 54
No 109
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.51 E-value=12 Score=31.55 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.8
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccC-C-hH-HHHHHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASL-K-PE-FIDIIK 166 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl-~-~~-f~~Ii~ 166 (173)
++||+..|+|+ ++++.+++. .+.|++.||++.+ + |. |.+|.+
T Consensus 243 ~ipiia~GGI~~~~da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i~~ 288 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLM-AGASAVQVATALMWDGPDVIRKIKK 288 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCccHheEcHHHHhcCccHHHHHhc
Confidence 59999999997 688999997 7899999999887 4 66 766653
No 110
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.49 E-value=0.74 Score=38.77 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=46.2
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCC----C-CCEEEeecccCC
Q 039862 85 YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQP----D-VDGFLVGGASLK 158 (173)
Q Consensus 85 YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~----~-vDG~LiG~asl~ 158 (173)
|=-+---||..=++.+.++++.+. .++|++++|+|..-. ..++.... + ++|++||+|-++
T Consensus 163 ~tdI~rdGt~~G~d~el~~~l~~~--------------~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~ 228 (241)
T PRK14114 163 HTEIEKDGTLQEHDFSLTRKIAIE--------------AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE 228 (241)
T ss_pred EEeechhhcCCCcCHHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence 556677788877887776654322 258999999998854 55666542 5 999999999665
Q ss_pred hH--HHHHH
Q 039862 159 PE--FIDII 165 (173)
Q Consensus 159 ~~--f~~Ii 165 (173)
-. +.++.
T Consensus 229 g~i~~~e~~ 237 (241)
T PRK14114 229 GILTVEVMK 237 (241)
T ss_pred CCCCHHHHH
Confidence 32 44443
No 111
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=89.45 E-value=0.96 Score=38.97 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=46.0
Q ss_pred ccCCCCC-CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-HHHHHHH
Q 039862 91 IGTGKVA-TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIK 166 (173)
Q Consensus 91 IGtG~~a-~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~-~f~~Ii~ 166 (173)
||||+=. +|..++- |++ ..++||+-|++|........+-+.|.||+|+.++-.+. +-.++.+
T Consensus 169 IGSg~Gl~n~~~l~~----i~e----------~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~ 232 (267)
T CHL00162 169 IGSGQGLQNLLNLQI----IIE----------NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAK 232 (267)
T ss_pred ccCCCCCCCHHHHHH----HHH----------cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHH
Confidence 8999874 5655443 333 13599999999999998888888999999999987763 2444443
No 112
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=89.06 E-value=5.4 Score=35.06 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=35.0
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-ChH-HHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-KPE-FIDII 165 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~~~-f~~Ii 165 (173)
++||+.+|++ +++.+.+++..-.+|++.+|++.+ +|+ |.++.
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAA 320 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHH
Confidence 5899999998 667799999988999999999988 487 55443
No 113
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=88.93 E-value=0.81 Score=40.11 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=33.2
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKS 167 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~ 167 (173)
++||++-|+| +++.+.+++. ++|||.||++.+. |. |.++.+.
T Consensus 205 ~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~~ 249 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDRE 249 (333)
T ss_pred CCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHHH
Confidence 5999997777 5566788876 5999999999985 77 7777543
No 114
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=88.61 E-value=14 Score=31.16 Aligned_cols=133 Identities=18% Similarity=0.318 Sum_probs=89.0
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeE--EEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKV--IACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~p--IlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
.+.++|++++-+ |.| ....+.+-++...+.|.++ ++|=+.+.+ .++..|..++ -=
T Consensus 79 ~fa~agad~It~-H~E-------~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~-------------~i~~~l~~vD--~V 135 (220)
T COG0036 79 AFAKAGADIITF-HAE-------ATEHIHRTIQLIKELGVKAGLVLNPATPLE-------------ALEPVLDDVD--LV 135 (220)
T ss_pred HHHHhCCCEEEE-Eec-------cCcCHHHHHHHHHHcCCeEEEEECCCCCHH-------------HHHHHHhhCC--EE
Confidence 466788888755 777 2233445567777788886 455555543 3345565544 12
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP- 159 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~- 159 (173)
++..-+|-+ +|+...|+..++ ++.+|+++.++ + ++.|--=|+|+.+|+..+.. .|.|=+..|++-...
T Consensus 136 llMsVnPGf---gGQ~Fi~~~l~K-i~~lr~~~~~~-----~-~~~IeVDGGI~~~t~~~~~~-AGad~~VaGSalF~~~ 204 (220)
T COG0036 136 LLMSVNPGF---GGQKFIPEVLEK-IRELRAMIDER-----L-DILIEVDGGINLETIKQLAA-AGADVFVAGSALFGAD 204 (220)
T ss_pred EEEeECCCC---cccccCHHHHHH-HHHHHHHhccc-----C-CeEEEEeCCcCHHHHHHHHH-cCCCEEEEEEEEeCCc
Confidence 456778854 688877777766 55667766431 2 67788899999999877765 899999999976664
Q ss_pred HHHHHHHHHh
Q 039862 160 EFIDIIKSAT 169 (173)
Q Consensus 160 ~f~~Ii~~~~ 169 (173)
++.+-++...
T Consensus 205 d~~~~i~~~~ 214 (220)
T COG0036 205 DYKATIRELR 214 (220)
T ss_pred cHHHHHHHHH
Confidence 3655555543
No 115
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.43 E-value=0.49 Score=40.76 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++|+++.+.++.++.. ..++.+.-=|+|+++|+.+++. .|+|.+-+|..-.+
T Consensus 211 ~~~e~l~~~v~~~~~~---------~~~~~ieAsGgIt~~ni~~ya~-~GvD~IsvG~l~~s 262 (273)
T PRK05848 211 MSVEEIKEVVAYRNAN---------YPHVLLEASGNITLENINAYAK-SGVDAISSGSLIHQ 262 (273)
T ss_pred CCHHHHHHHHHHhhcc---------CCCeEEEEECCCCHHHHHHHHH-cCCCEEEeChhhcC
Confidence 5899999988765321 2357799999999999999987 89999999987664
No 116
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=88.21 E-value=0.48 Score=38.17 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=39.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 92 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 92 GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
|+|.+.+.+.+.++. .++|++-.|+++++|+.+++.....||+=|.++-..
T Consensus 136 g~g~~~~~~~l~~~~----------------~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 136 GTGKTFDWSLLRGLA----------------SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred CCcceEChHHhhccc----------------cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccC
Confidence 477777766544321 148999999999999999999777999999887554
No 117
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.09 E-value=0.81 Score=38.27 Aligned_cols=57 Identities=21% Similarity=0.125 Sum_probs=38.2
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC
Q 039862 85 YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 85 YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl 157 (173)
|=-+-.-||..=++.+.++.+ ++. ..+++|+|+|.... ..++. ..++||++||+|-+
T Consensus 165 ~tdI~~dGt~~G~d~el~~~~----~~~-----------~~~viasGGv~s~~Dl~~l~-~~G~~gvivg~Aly 222 (232)
T PRK13586 165 FTYISNEGTTKGIDYNVKDYA----RLI-----------RGLKEYAGGVSSDADLEYLK-NVGFDYIIVGMAFY 222 (232)
T ss_pred EecccccccCcCcCHHHHHHH----HhC-----------CCCEEEECCCCCHHHHHHHH-HCCCCEEEEehhhh
Confidence 556666677666666654432 211 13489999999855 45555 57999999999854
No 118
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=87.78 E-value=1.1 Score=39.25 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=32.5
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
++||+.=|.| +.+.+.+.+. ++||+.||++.+. |. |.++-+.+
T Consensus 195 ~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~~~~l 240 (318)
T TIGR00742 195 HLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANVDREI 240 (318)
T ss_pred CCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHHHHHh
Confidence 5999885555 5566777774 8999999999995 77 88775543
No 119
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=87.77 E-value=1.5 Score=36.64 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=32.9
Q ss_pred cceEEEcCCCCcc-cHHHHhcCCCCCEEEeecccCCh--HHHHHHHHH
Q 039862 124 STRIIYGGSVNGA-NCKELAAQPDVDGFLVGGASLKP--EFIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~asl~~--~f~~Ii~~~ 168 (173)
++|+++.|+|... .+.+++...++||+++|++-+.. .+.++.+.+
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 5899997777764 57888888779999999986653 255554444
No 120
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.72 E-value=0.48 Score=39.43 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=27.5
Q ss_pred cceEEEcCCCCccc-HHHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl~ 158 (173)
++|++++|+|..-. ..++.+ .++||+++|+|-+.
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~-~g~~gvivg~al~~ 216 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAE-IGFSGVIIGKALYE 216 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHH-CCCCEEEEEhhhhc
Confidence 59999999998754 455555 79999999998665
No 121
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=87.36 E-value=12 Score=32.55 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=39.5
Q ss_pred eEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC
Q 039862 81 VVLAYEPVWAIGT-GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 81 iiIAYEPvwAIGt-G~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl 157 (173)
..|..+...+-|. |..++.+.+.+ +++. -++||+--|+|...+ +.+.+. .+.||+.+|.+-+
T Consensus 131 D~Ivv~g~eagGh~g~~~~~~ll~~----v~~~----------~~iPviaaGGI~~~~~~~~al~-~GA~gV~iGt~f~ 194 (307)
T TIGR03151 131 DAVIAEGMESGGHIGELTTMALVPQ----VVDA----------VSIPVIAAGGIADGRGMAAAFA-LGAEAVQMGTRFL 194 (307)
T ss_pred CEEEEECcccCCCCCCCcHHHHHHH----HHHH----------hCCCEEEECCCCCHHHHHHHHH-cCCCEeecchHHh
Confidence 3555677766664 44333333333 2221 148999977776655 777776 7999999999655
No 122
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=87.34 E-value=4.9 Score=37.00 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhc-CCCCCEEEeeccc
Q 039862 78 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAA-QPDVDGFLVGGAS 156 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~-~~~vDG~LiG~as 156 (173)
.++.+|+. |..+++...+.++.+.+|+. ..+++|+.||.--.-+..+++. .+.+|-+.+|.+=
T Consensus 62 ~~pdvVgi-------s~~t~~~~~a~~~~~~~k~~---------~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE 125 (497)
T TIGR02026 62 HCPDLVLI-------TAITPAIYIACETLKFARER---------LPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGE 125 (497)
T ss_pred cCcCEEEE-------ecCcccHHHHHHHHHHHHHH---------CCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcH
Confidence 45667776 34556677777777777765 3569999999865667778776 4789999999872
Q ss_pred CChHHHHHHHHHhh
Q 039862 157 LKPEFIDIIKSATV 170 (173)
Q Consensus 157 l~~~f~~Ii~~~~~ 170 (173)
..|.++++.+..
T Consensus 126 --~~~~~Ll~~l~~ 137 (497)
T TIGR02026 126 --ETVVKLIAALEN 137 (497)
T ss_pred --HHHHHHHHHHHc
Confidence 238888876543
No 123
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=86.92 E-value=1.7 Score=36.19 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=37.3
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
.+|+.+||+|+.-...+.+-..++|-+-+|++.++ |+ +.++++.+.
T Consensus 75 ~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~ 122 (241)
T PRK14024 75 DVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG 122 (241)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh
Confidence 48999999999877655555589999999999986 77 788887653
No 124
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=86.87 E-value=3.6 Score=36.65 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCeEEEEcccccccCCCC---CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 79 DNVVLAYEPVWAIGTGKV---ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~---a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
.-.+|.+-|++.-.|-.. ..++.++. +.. ..++|++-=|+|+++|+.+++. .+.||+-|+++
T Consensus 260 GaDYI~lGPvf~T~tKp~~~~~Gle~l~~-------~~~-------~~~iPv~AiGGI~~~ni~~l~~-~Ga~gVAvisa 324 (347)
T PRK02615 260 GADYIGVGPVFPTPTKPGKAPAGLEYLKY-------AAK-------EAPIPWFAIGGIDKSNIPEVLQ-AGAKRVAVVRA 324 (347)
T ss_pred CCCEEEECCCcCCCCCCCCCCCCHHHHHH-------HHH-------hCCCCEEEECCCCHHHHHHHHH-cCCcEEEEeHH
Confidence 346889999998776532 33344333 221 1248999999999999998775 79999999998
Q ss_pred cCC---hH--HHHHHHHHhhh
Q 039862 156 SLK---PE--FIDIIKSATVK 171 (173)
Q Consensus 156 sl~---~~--f~~Ii~~~~~~ 171 (173)
-++ |. +..+...+.+.
T Consensus 325 I~~a~dp~~~~~~l~~~l~~~ 345 (347)
T PRK02615 325 IMGAEDPKQATQELLKQLSRE 345 (347)
T ss_pred HhCCCCHHHHHHHHHHHHhcc
Confidence 885 32 56665555443
No 125
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=86.86 E-value=1.3 Score=38.49 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=29.2
Q ss_pred cceEE--EcCCC-CcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRII--YGGSV-NGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~il--YGGSV-~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++||+ --|+| +|+|+..++. .++||++||++-+.
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e-~GAdgVaVGSAI~~ 230 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 230 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHhhc
Confidence 48886 66777 9999999997 79999999999874
No 126
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.78 E-value=0.97 Score=39.10 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+|++++++++.+++. . ...++.+.--|+|+++|+.+++. .++|.+-+|.-.++
T Consensus 211 ~~~e~l~~~v~~l~~~----~---~~~~~~leaSGGI~~~ni~~yA~-tGvD~Is~galt~s 264 (278)
T PRK08385 211 MTPEEIREVIEALKRE----G---LRERVKIEVSGGITPENIEEYAK-LDVDVISLGALTHS 264 (278)
T ss_pred CCHHHHHHHHHHHHhc----C---cCCCEEEEEECCCCHHHHHHHHH-cCCCEEEeChhhcC
Confidence 3799999999887653 1 01468899999999999999988 79999999986654
No 127
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=86.43 E-value=2.3 Score=36.21 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=36.7
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
++||+.-|+| +++.+.+++. .+.|++.+|++.+. +. |.+|.+.+.
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~~~l~ 281 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKIIEGLI 281 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHHHHHH
Confidence 4899987777 6788888887 78999999999984 77 777777664
No 128
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.11 E-value=1.9 Score=36.00 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=36.3
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
.+||.+||+|+.-...+.+-..++|=+.+|.+.++ |+ +.++.+.+
T Consensus 76 ~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~f 122 (234)
T PRK13587 76 TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTF 122 (234)
T ss_pred CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHc
Confidence 38999999999877655555589999999999995 77 67777665
No 129
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.96 E-value=0.98 Score=39.30 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
..+|+++++.+..+|.. ..++.+.-=|+||++|+.+++. .|||.+-+|.-.++
T Consensus 227 nm~~e~vk~av~~~~~~---------~~~v~ieaSGGI~~~ni~~yA~-tGvD~Is~galt~s 279 (289)
T PRK07896 227 NFPVWQTQEAVQRRDAR---------APTVLLESSGGLTLDTAAAYAE-TGVDYLAVGALTHS 279 (289)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEECCCCHHHHHHHHh-cCCCEEEeChhhcC
Confidence 46799999999877664 3467889999999999999988 89999999986664
No 130
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=85.77 E-value=5.1 Score=34.18 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=49.7
Q ss_pred HHHHHHhccCCCCCeEEEEcccc-------------cc--cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEE-Ec
Q 039862 67 QTKAIAEKISNWDNVVLAYEPVW-------------AI--GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRII-YG 130 (173)
Q Consensus 67 Ql~~~l~~v~~~~~iiIAYEPvw-------------AI--GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il-YG 130 (173)
+++..+..+....+.+++|+|.| .+ ++|..|+|.++.++.+.||+. +++++ +-
T Consensus 165 ~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~if~e 233 (287)
T cd01137 165 WAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKE-----------KVPAVFVE 233 (287)
T ss_pred HHHHHHhcCCcccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHh-----------CCCEEEEe
Confidence 33344443332346789999988 23 467889999999999999874 46655 56
Q ss_pred CCCCcccHHHHhcCCCCC
Q 039862 131 GSVNGANCKELAAQPDVD 148 (173)
Q Consensus 131 GSV~~~n~~~~~~~~~vD 148 (173)
-..+++-++.+++..++.
T Consensus 234 ~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 234 STVNDRLMKQVAKETGAK 251 (287)
T ss_pred CCCChHHHHHHHHHhCCc
Confidence 677777788888877763
No 131
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=85.56 E-value=2.2 Score=36.28 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=39.7
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHh
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~ 169 (173)
++||.-||++...|..+-+-..+++=+.+|.++++ |+ +.++++.+.
T Consensus 75 ~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g 122 (241)
T COG0106 75 DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYG 122 (241)
T ss_pred CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcC
Confidence 58999999999999776666699999999999986 78 788888764
No 132
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=85.48 E-value=1.1 Score=39.48 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=35.0
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDII 165 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii 165 (173)
++||++.|.+ +++.+.+++...++|++.+|++.+. |+ |.++.
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence 4899998887 6688999999889999999999884 88 55543
No 133
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.26 E-value=10 Score=30.26 Aligned_cols=34 Identities=26% Similarity=0.166 Sum_probs=29.8
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++|++-=|+|+++|+.+++.. ++||+-+|++-.+
T Consensus 143 ~~p~~a~GGI~~~n~~~~~~~-G~~~v~v~s~i~~ 176 (190)
T cd00452 143 QVRFMPTGGVSLDNAAEWLAA-GVVAVGGGSLLPK 176 (190)
T ss_pred CCeEEEeCCCCHHHHHHHHHC-CCEEEEEchhcch
Confidence 489999999999999999995 5999999998653
No 134
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=85.00 E-value=1.2 Score=36.98 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=35.8
Q ss_pred ceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHHhh
Q 039862 125 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSATV 170 (173)
Q Consensus 125 i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~~~ 170 (173)
+|+.+||+|...+..+.+-..++|-+.+|.++++ ++ +.++++.+..
T Consensus 74 ~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~ 121 (229)
T PF00977_consen 74 IPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGS 121 (229)
T ss_dssp SEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGG
T ss_pred ccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCc
Confidence 9999999999988655555688999999999885 77 6777776644
No 135
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.82 E-value=1.3 Score=38.59 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=33.5
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-ChHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-KPEF 161 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~~~f 161 (173)
++||+.+|++ +++.+.+++....+|.|.+|+..+ +|+|
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~ 331 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDL 331 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccH
Confidence 5899999999 577899999999999999999988 4774
No 136
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=84.68 E-value=0.99 Score=38.53 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=44.2
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
..+|..-|. +|+.+.++++.+++. .++|+.--|+|+++|+.+++. .++||+-+|.....
T Consensus 202 aD~I~ld~~---------~~e~l~~~v~~i~~~----------~~i~i~asGGIt~~ni~~~a~-~Gad~Isvgal~~s 260 (269)
T cd01568 202 ADIIMLDNM---------SPEELKEAVKLLKGL----------PRVLLEASGGITLENIRAYAE-TGVDVISTGALTHS 260 (269)
T ss_pred CCEEEECCC---------CHHHHHHHHHHhccC----------CCeEEEEECCCCHHHHHHHHH-cCCCEEEEcHHHcC
Confidence 356777663 467777766665431 258999999999999999986 89999999765443
No 137
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.60 E-value=11 Score=33.88 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=40.0
Q ss_pred CeEEEEcccccccCCC-C-----CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhcCCCCCEEEe
Q 039862 80 NVVLAYEPVWAIGTGK-V-----ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAAQPDVDGFLV 152 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~-~-----a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~~~~vDG~Li 152 (173)
-+.+.++|- ++-|+. . |...-+.+..+.-++++.+.. +.++||+--|++... .+..-+. .+.|++.+
T Consensus 211 ~V~VG~G~G-s~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~----~~~vpVIAdGGI~~~~diakAla-lGAd~Vm~ 284 (368)
T PRK08649 211 GVLVGIGPG-AACTSRGVLGIGVPMATAIADVAAARRDYLDETG----GRYVHVIADGGIGTSGDIAKAIA-CGADAVML 284 (368)
T ss_pred EEEECCCCC-cCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhc----CCCCeEEEeCCCCCHHHHHHHHH-cCCCeecc
Confidence 456788872 122221 1 222233344444444544432 236999997777554 4444444 79999999
Q ss_pred ecccC
Q 039862 153 GGASL 157 (173)
Q Consensus 153 G~asl 157 (173)
|++-+
T Consensus 285 Gs~fa 289 (368)
T PRK08649 285 GSPLA 289 (368)
T ss_pred cchhc
Confidence 99643
No 138
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.19 E-value=2.7 Score=34.00 Aligned_cols=45 Identities=18% Similarity=0.092 Sum_probs=35.8
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChH-HHHHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~-f~~Ii~~~ 168 (173)
++||+.+|.+.+..-.+.+...++||+++|...++++ +.++++.+
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 4899999888888667777789999999999988854 56665543
No 139
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=84.18 E-value=2.1 Score=36.65 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=41.4
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
..+|..-|. +|+.+.+..+.+|.. ..++|+.-=|+|+++|+.+++. .++||+.+|..
T Consensus 204 aD~I~ld~~---------~p~~l~~~~~~~~~~---------~~~i~i~AsGGI~~~ni~~~~~-~Gvd~I~vsai 260 (272)
T cd01573 204 ADILQLDKF---------SPEELAELVPKLRSL---------APPVLLAAAGGINIENAAAYAA-AGADILVTSAP 260 (272)
T ss_pred CCEEEECCC---------CHHHHHHHHHHHhcc---------CCCceEEEECCCCHHHHHHHHH-cCCcEEEEChh
Confidence 347777765 466666666555432 1358999999999999999987 79999966554
No 140
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=84.04 E-value=2.7 Score=35.34 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=35.4
Q ss_pred ceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 125 TRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 125 i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
+|+.+||+|...+..+.+-..++|=+.+|.++++ |+ +.++++.+
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~ 120 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYG 120 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHc
Confidence 8999999999988766555589999999999886 77 55665554
No 141
>PLN02389 biotin synthase
Probab=83.96 E-value=29 Score=31.19 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=79.8
Q ss_pred cchhhcCCCEEEEccc--c--ccccc-CCCHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHS--E--RRALL-NESNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTKAIA 72 (173)
Q Consensus 2 ~mLkd~G~~~viiGHS--E--RR~~~-~E~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~~~l 72 (173)
+.||++|++.+-++.- + -|+.. ..+-+..-+-++.|.+.|+.+ |+=.||+.+++- +.+ ..+..+-
T Consensus 182 ~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv-----~~l-~~Lr~L~ 255 (379)
T PLN02389 182 AQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRV-----GLL-HTLATLP 255 (379)
T ss_pred HHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHH-----HHH-HHHHhcc
Confidence 4689999999877764 2 12222 345566667789999999964 333478877652 111 1222210
Q ss_pred hccCC--CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhcCCCCCE
Q 039862 73 EKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAAQPDVDG 149 (173)
Q Consensus 73 ~~v~~--~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~~~~vDG 149 (173)
...+. ... .+.+ |=...+.-.++++++.-++++.-|-.+-+ ..++ +-||-+... ....++-..|.|+
T Consensus 256 ~~~~~v~l~~-l~P~-~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~-------~~i~-i~~gr~~l~~~~~~~~l~~GAN~ 325 (379)
T PLN02389 256 EHPESVPINA-LVAV-KGTPLEDQKPVEIWEMVRMIATARIVMPK-------AMVR-LSAGRVRFSMAEQALCFLAGANS 325 (379)
T ss_pred cCCcEEeccc-ceec-CCCcCCCCCCCCHHHHHHHHHHHHHHCCC-------cccc-ccccccccChhHHHHHHHhCCCE
Confidence 01110 111 1111 21222223358898988889888876522 1233 347765333 3456777789999
Q ss_pred EEeecccC
Q 039862 150 FLVGGASL 157 (173)
Q Consensus 150 ~LiG~asl 157 (173)
+++|+--|
T Consensus 326 ~~~g~~~L 333 (379)
T PLN02389 326 IFTGDKLL 333 (379)
T ss_pred EEECCccc
Confidence 99999744
No 142
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=83.72 E-value=1.1 Score=34.68 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=28.8
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.-+|+..-|+||++=+-+-++ .+.|||||+|.-+.
T Consensus 31 RiIrv~CsGrvn~~fvl~Al~-~GaDGV~v~GC~~g 65 (132)
T COG1908 31 RIIRVMCSGRVNPEFVLKALR-KGADGVLVAGCKIG 65 (132)
T ss_pred EEEEeeccCccCHHHHHHHHH-cCCCeEEEeccccc
Confidence 346778999999998777666 89999999987664
No 143
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=83.62 E-value=0.3 Score=39.60 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=31.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeec
Q 039862 92 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 92 GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~ 154 (173)
|||.+.+.+.+..+.+. ....|++.+|+++|+|+.+.+......|+=|-+
T Consensus 128 gtG~~~dw~~~~~~~~~-------------~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsS 177 (197)
T PF00697_consen 128 GTGKTFDWSLLKKIVES-------------YSPKPVILAGGLNPENVREAIRQVRPYGVDVSS 177 (197)
T ss_dssp SSSS---GGGGCCCHHT--------------GTSTEEEESS--TTTHHHHHHHC--SEEEESG
T ss_pred cCCcccCHHHhhhhhhh-------------cccCcEEEEcCCChHHHHHHHHhcCceEEEeCC
Confidence 58988777665543321 114889999999999999999988888887644
No 144
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=83.51 E-value=1.7 Score=38.20 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=35.5
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccC-ChHH-HHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEF-IDI 164 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl-~~~f-~~I 164 (173)
++||+--|.++++.+.+++....+|+|.+|++.+ +|+| .++
T Consensus 285 ~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~ 327 (338)
T cd02933 285 KGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERL 327 (338)
T ss_pred CCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHH
Confidence 4899999999999999999999999999999988 4774 443
No 145
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=83.49 E-value=2.4 Score=36.62 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
-.+|+++.+.++.+|+. ..++.+.-=|+||++|+.+++. .++|.+-+|.-
T Consensus 216 n~~~e~l~~~v~~l~~~---------~~~~~leasGGI~~~ni~~ya~-~GvD~is~gal 265 (277)
T TIGR01334 216 KFTPQQLHHLHERLKFF---------DHIPTLAAAGGINPENIADYIE-AGIDLFITSAP 265 (277)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEECCCCHHHHHHHHh-cCCCEEEeCcc
Confidence 46799999999988743 3467889999999999999987 78999988864
No 146
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=83.26 E-value=6.8 Score=33.95 Aligned_cols=59 Identities=8% Similarity=0.168 Sum_probs=45.1
Q ss_pred CCeEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCCcccHHHHh
Q 039862 79 DNVVLAYEPVWA---------------IGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVNGANCKELA 142 (173)
Q Consensus 79 ~~iiIAYEPvwA---------------IGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~~~n~~~~~ 142 (173)
++.+++|.|.|. +.+|..|||.++.++.+.||+. ++++++ -=..+++.++.+.
T Consensus 203 ~~~~i~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~If~e~~~~~~~~~~la 271 (311)
T PRK09545 203 GKGYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQ-----------KATCVFAEPQFRPAVIESVA 271 (311)
T ss_pred CCcEEEECchHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHc-----------CCCEEEecCCCChHHHHHHH
Confidence 456889999983 3468889999999999998864 466665 5566777788888
Q ss_pred cCCCCC
Q 039862 143 AQPDVD 148 (173)
Q Consensus 143 ~~~~vD 148 (173)
++.++.
T Consensus 272 ~e~g~~ 277 (311)
T PRK09545 272 KGTSVR 277 (311)
T ss_pred HhcCCe
Confidence 877764
No 147
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=83.24 E-value=24 Score=28.91 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.7
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++|++-=|+|+++|+.++++ .++||+-+|++-++
T Consensus 151 ~ipvvaiGGI~~~n~~~~~~-aGa~~vav~s~l~~ 184 (206)
T PRK09140 151 DVPVFAVGGVTPENLAPYLA-AGAAGFGLGSALYR 184 (206)
T ss_pred CCeEEEECCCCHHHHHHHHH-CCCeEEEEehHhcc
Confidence 58999999999999999998 69999999998765
No 148
>PRK07695 transcriptional regulator TenI; Provisional
Probab=83.24 E-value=6.9 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=30.4
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++||+--|+|+++|+.+++. .++||+-+|++-++
T Consensus 149 ~ipvia~GGI~~~~~~~~~~-~Ga~gvav~s~i~~ 182 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVLA-AGVSGIAVMSGIFS 182 (201)
T ss_pred CCCEEEEcCCCHHHHHHHHH-cCCCEEEEEHHHhc
Confidence 48899989999999999987 88999999998875
No 149
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=83.22 E-value=17 Score=29.63 Aligned_cols=44 Identities=14% Similarity=0.373 Sum_probs=28.6
Q ss_pred cceEEE-cC-CCCc-----ccHHHHhcCCCCCEEEeecccCC-hHHHHHHHHH
Q 039862 124 STRIIY-GG-SVNG-----ANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 168 (173)
Q Consensus 124 ~i~ilY-GG-SV~~-----~n~~~~~~~~~vDG~LiG~asl~-~~f~~Ii~~~ 168 (173)
.+|++- || +... +|+.+++. .|++|+++|++.++ ++....++.+
T Consensus 179 ~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i~~~~dp~~~~~~~ 230 (235)
T cd00958 179 PVPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRNIFQRPDPVAMLRAI 230 (235)
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechhhhcCCCHHHHHHHH
Confidence 366666 55 3322 56666665 99999999999986 3344444443
No 150
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=82.56 E-value=6.7 Score=30.96 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 78 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
..-.++.+-|+|.--|-..+.|--... ++++.+. ..+||+-=|+|+++|+.++.. .+.||+-+-++
T Consensus 114 ~g~dYv~~gpvf~T~sk~~~~~~g~~~----l~~~~~~-------~~~pv~AlGGI~~~~i~~l~~-~Ga~gvAvi~a 179 (180)
T PF02581_consen 114 LGADYVFLGPVFPTSSKPGAPPLGLDG----LREIARA-------SPIPVYALGGITPENIPELRE-AGADGVAVISA 179 (180)
T ss_dssp CTTSEEEEETSS--SSSSS-TTCHHHH----HHHHHHH-------TSSCEEEESS--TTTHHHHHH-TT-SEEEESHH
T ss_pred cCCCEEEECCccCCCCCccccccCHHH----HHHHHHh-------CCCCEEEEcCCCHHHHHHHHH-cCCCEEEEEee
Confidence 345789999999877655444444443 3333221 249999999999999998775 89999988654
No 151
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=82.33 E-value=2.7 Score=36.53 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
...+|++++++++.+++. ..++.+--=|+||++|+.+++. .+||.+-+|.-
T Consensus 216 Dn~~~e~l~~av~~~~~~---------~~~~~leaSGGI~~~ni~~yA~-tGvD~Is~gal 266 (284)
T PRK06096 216 DKFSPQQATEIAQIAPSL---------APHCTLSLAGGINLNTLKNYAD-CGIRLFITSAP 266 (284)
T ss_pred CCCCHHHHHHHHHHhhcc---------CCCeEEEEECCCCHHHHHHHHh-cCCCEEEECcc
Confidence 456899999999876542 2357889999999999999998 78999977754
No 152
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=80.90 E-value=6 Score=34.20 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=45.7
Q ss_pred CeEEEEccccccc----CCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhcCCC-CCEEEee
Q 039862 80 NVVLAYEPVWAIG----TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAAQPD-VDGFLVG 153 (173)
Q Consensus 80 ~iiIAYEPvwAIG----tG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~~~~-vDG~LiG 153 (173)
.++++. .-|--| .....|.++..+.++.|.+..++.- .+-+.+.|||-++.. .+..++.... +||+ +|
T Consensus 172 Diiv~H-~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~----~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf-~G 245 (268)
T PF09370_consen 172 DIIVAH-MGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVN----PDIIVLCHGGPIATPEDAQYVLRNTKGIHGF-IG 245 (268)
T ss_dssp SEEEEE--SS----------S--HHHHHHHHHHHHHHHHCC-----TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE-EE
T ss_pred CEEEec-CCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE-ec
Confidence 355555 555443 3344677777777777777665543 345778899998754 4666666544 8986 56
Q ss_pred cccCC--hHHHHHHHHHhhh
Q 039862 154 GASLK--PEFIDIIKSATVK 171 (173)
Q Consensus 154 ~asl~--~~f~~Ii~~~~~~ 171 (173)
+.|+. |-=..|-+.+..+
T Consensus 246 ~Ss~ERlP~E~ai~~~~~~F 265 (268)
T PF09370_consen 246 ASSMERLPVERAITETVRAF 265 (268)
T ss_dssp STTTTHHHHHHHHHHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHh
Confidence 66676 4333344444433
No 153
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.81 E-value=5.9 Score=34.18 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+|+.++++.+.++ ..+++.-=|+|+++|+.+++. .++||+-+|.-.++
T Consensus 217 ~~~e~l~~~~~~~~------------~~i~i~AiGGIt~~ni~~~a~-~Gvd~IAvg~l~~s 265 (277)
T PRK08072 217 RTPDEIREFVKLVP------------SAIVTEASGGITLENLPAYGG-TGVDYISLGFLTHS 265 (277)
T ss_pred CCHHHHHHHHHhcC------------CCceEEEECCCCHHHHHHHHH-cCCCEEEEChhhcC
Confidence 67888877666542 247778899999999999998 89999999986654
No 154
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=80.41 E-value=23 Score=31.51 Aligned_cols=42 Identities=17% Similarity=0.062 Sum_probs=34.7
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccC-ChH-HHHHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASL-KPE-FIDII 165 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl-~~~-f~~Ii 165 (173)
++||+.-|+++ ++.+.+++....+|++.+|++.+ +|+ +.++.
T Consensus 289 ~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 333 (370)
T cd02929 289 SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIR 333 (370)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHH
Confidence 58999988885 67799999999999999999998 488 55443
No 155
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=79.93 E-value=6.5 Score=33.59 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=42.1
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
..+|...|. +|+.++++++.++ ..+|+.-=|+|+++|+.+++. .++||+-+|....
T Consensus 199 aDyI~ld~~---------~~e~lk~~v~~~~------------~~ipi~AsGGI~~~ni~~~a~-~Gvd~Isvgait~ 254 (265)
T TIGR00078 199 ADIIMLDNM---------KPEEIKEAVQLLK------------GRVLLEASGGITLDNLEEYAE-TGVDVISSGALTH 254 (265)
T ss_pred CCEEEECCC---------CHHHHHHHHHHhc------------CCCcEEEECCCCHHHHHHHHH-cCCCEEEeCHHHc
Confidence 457778774 4677777666532 137899999999999999986 8999999965433
No 156
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=79.85 E-value=4.9 Score=35.76 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=52.2
Q ss_pred cccccCCCC---CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhc----CCCCCEEEeecccCChH
Q 039862 88 VWAIGTGKV---ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAA----QPDVDGFLVGGASLKPE 160 (173)
Q Consensus 88 vwAIGtG~~---a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~----~~~vDG~LiG~asl~~~ 160 (173)
+-.|+|+-. .+++++.++.+-+ |. +-++||+.|||=||+-.-+.+. ...=+-.|+.+|+|+-+
T Consensus 170 iHlIsTdPki~D~p~~EAak~lEdv---Lq-------AVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlD 239 (403)
T COG2069 170 IHLISTDPKIKDTPAKEAAKTLEDV---LQ-------AVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLD 239 (403)
T ss_pred EEeecCCccccCCCHHHHHHHHHHH---HH-------hcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccccccC
Confidence 467888765 4455555554444 32 4579999999999987655443 23347799999999999
Q ss_pred HHHHHHHHhh
Q 039862 161 FIDIIKSATV 170 (173)
Q Consensus 161 f~~Ii~~~~~ 170 (173)
|..|.+.+.+
T Consensus 240 y~~ia~AA~k 249 (403)
T COG2069 240 YERIAEAALK 249 (403)
T ss_pred HHHHHHHHHh
Confidence 9999988755
No 157
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.69 E-value=4.5 Score=29.47 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeec
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~ 154 (173)
+...+.+.++++.+|+. + ..+++|+.||..-..+ .+.+...++|+++=.+
T Consensus 61 ~~~~~~~~~~i~~l~~~----~----~~~~~i~vGG~~~~~~-~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 61 TTHMTLMKEVIEELKEA----G----LDDIPVLVGGAIVTRD-FKFLKEIGVDAYFGPA 110 (119)
T ss_pred cccHHHHHHHHHHHHHc----C----CCCCeEEEECCCCChh-HHHHHHcCCeEEECCH
Confidence 34566667777777654 1 1269999999987664 4678889999987644
No 158
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=79.37 E-value=11 Score=35.13 Aligned_cols=76 Identities=8% Similarity=0.080 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEcccc---------------cccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcce
Q 039862 62 AVVAEQTKAIAEKISNWDNVVLAYEPVW---------------AIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTR 126 (173)
Q Consensus 62 ~~l~~Ql~~~l~~v~~~~~iiIAYEPvw---------------AIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ 126 (173)
+.|.++++..++.++...+.+++|+|.| .+..|..||+.++.++.+.||+. +++
T Consensus 354 ~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~-----------~V~ 422 (479)
T TIGR03772 354 ERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENL-----------KVP 422 (479)
T ss_pred HHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHc-----------CCC
Confidence 3344445555554433456789999988 24578889999999999998864 577
Q ss_pred EEEcCCCCccc---HHHHhcCCCCC
Q 039862 127 IIYGGSVNGAN---CKELAAQPDVD 148 (173)
Q Consensus 127 ilYGGSV~~~n---~~~~~~~~~vD 148 (173)
+|+--.-.+.+ ++.+++..++.
T Consensus 423 ~IF~Epq~~~~~~~l~~IA~e~Gv~ 447 (479)
T TIGR03772 423 AVFLEPNLAARSTTLNEIADELGVR 447 (479)
T ss_pred EEEEeCCCCCchHHHHHHHHHcCCc
Confidence 77655544333 57777777764
No 159
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=79.16 E-value=4.1 Score=38.34 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhccchhhcCcceEEEcCCCCc------------ccHHHHhcCCCCCEEEeecccCC
Q 039862 105 VHAELRKWLKDNVSAEVAASTRIIYGGSVNG------------ANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 105 ~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~------------~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
+...|++..++. .+|+.+||+|+. +.++.++. .++|=+.||+++++
T Consensus 302 ~~~~i~~i~~~~-------~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~-~GadkV~i~s~Av~ 359 (538)
T PLN02617 302 MLEVLRRASENV-------FVPLTVGGGIRDFTDANGRYYSSLEVASEYFR-SGADKISIGSDAVY 359 (538)
T ss_pred HHHHHHHHHhhC-------CCCEEEcCCccccccccccccchHHHHHHHHH-cCCCEEEEChHHHh
Confidence 455566654332 399999999998 45677776 99999999998886
No 160
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=79.12 E-value=2.1 Score=36.36 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCC
Q 039862 104 EVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDV 147 (173)
Q Consensus 104 ~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~v 147 (173)
+-...|++++... +..+.|+-||+|+++|+.++....++
T Consensus 156 eg~~~l~~li~~a-----~gri~Im~GaGV~~~N~~~l~~~tg~ 194 (241)
T COG3142 156 EGLDLLKRLIEQA-----KGRIIIMAGAGVRAENIAELVLLTGV 194 (241)
T ss_pred hhHHHHHHHHHHh-----cCCEEEEeCCCCCHHHHHHHHHhcCc
Confidence 3455666666442 46799999999999999999776654
No 161
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=78.78 E-value=2.7 Score=35.06 Aligned_cols=39 Identities=28% Similarity=0.171 Sum_probs=30.6
Q ss_pred cceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccCChH-HHHH
Q 039862 124 STRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLKPE-FIDI 164 (173)
Q Consensus 124 ~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl~~~-f~~I 164 (173)
++||+.-|+|+. +-+.+++. .++||+.||++ -+|- |.+|
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~-~~p~~~~~~ 231 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFS-YGADMVSVARA-SLPENIEWL 231 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC-CCchHHHHh
Confidence 589999777754 55788887 78999999999 5565 7665
No 162
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.23 E-value=2.4 Score=36.74 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
.+|+++++++..+++ ...+.-=|+||++|+.+++. .+||.+-+|.-.++.
T Consensus 222 ~s~e~l~~av~~~~~------------~~~leaSGgI~~~ni~~yA~-tGVD~Is~galths~ 271 (281)
T PRK06543 222 FSLDDLREGVELVDG------------RAIVEASGNVNLNTVGAIAS-TGVDVISVGALTHSV 271 (281)
T ss_pred CCHHHHHHHHHHhCC------------CeEEEEECCCCHHHHHHHHh-cCCCEEEeCccccCC
Confidence 689999999887652 24688899999999999987 799999999876653
No 163
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=77.22 E-value=11 Score=32.75 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=49.2
Q ss_pred HHHHHHCC--CeEEEEeCCCHHHHh----cCChHHHHHHHHHHHHh-------c-----------cCCCCC-eEEEEccc
Q 039862 34 VAYALSRG--LKVIACVGETLEQRE----SGSTVAVVAEQTKAIAE-------K-----------ISNWDN-VVLAYEPV 88 (173)
Q Consensus 34 v~~al~~g--l~pIlCvGE~~~~r~----~~~~~~~l~~Ql~~~l~-------~-----------v~~~~~-iiIAYEPv 88 (173)
++.|+++| |.|++|.||++-=.. .+.....+.+.+...+. + +..-.+ .++.=+|+
T Consensus 172 vklAl~~Ga~LVPv~~FGE~d~~~~~~~~~~~~~r~~q~~~~~~~g~~~~~f~Grg~f~~~~~gllP~r~pi~~VVG~PI 251 (297)
T PF03982_consen 172 VKLALQHGAPLVPVYSFGENDLYDQVQNPPGSWLRRFQRWLKKKFGFSLPLFWGRGIFPSYSFGLLPYRRPITTVVGKPI 251 (297)
T ss_pred HHhHHHcCCcEEeEEEeCChhheeeccCCchhHHHHHHHHHHHHcCcceeeeecccccCCCcccccccCCceEEEeecee
Confidence 67788866 789999999964221 12223333444444322 1 000112 23334555
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHhccc
Q 039862 89 WAIGTGKVATPAQAQEVHAELRKWLKDNVS 118 (173)
Q Consensus 89 wAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~ 118 (173)
-.=-. ..||.|+|++.|+.--+.|++.|.
T Consensus 252 ~v~~~-~~Pt~e~Vd~~H~~Y~~~L~~LFd 280 (297)
T PF03982_consen 252 PVPKI-ENPTQEDVDKLHARYIEALRELFD 280 (297)
T ss_pred cccCC-CCcCHHHHHHHHHHHHHHHHHHHH
Confidence 43322 237899999999988888888875
No 164
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.15 E-value=6.9 Score=32.66 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=35.4
Q ss_pred ceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccCC-hH-HHHHHHHH
Q 039862 125 TRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK-PE-FIDIIKSA 168 (173)
Q Consensus 125 i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl~-~~-f~~Ii~~~ 168 (173)
.|+.+||+|+. +.++.+++ .++|=+.||...++ |+ +.++++.+
T Consensus 74 ~~v~vGGGIrs~e~~~~~l~-~Ga~kvvigt~a~~~p~~~~~~~~~~ 119 (232)
T PRK13586 74 DWIQVGGGIRDIEKAKRLLS-LDVNALVFSTIVFTNFNLFHDIVREI 119 (232)
T ss_pred CCEEEeCCcCCHHHHHHHHH-CCCCEEEECchhhCCHHHHHHHHHHh
Confidence 48999999998 55666776 69999999998886 77 77788776
No 165
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=76.41 E-value=22 Score=32.92 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=46.1
Q ss_pred CeEEEEccccccc-CCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC
Q 039862 80 NVVLAYEPVWAIG-TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 80 ~iiIAYEPvwAIG-tG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl 157 (173)
..|++ | ..|-| ||..+...-+.. +..+|+.+...++. ...+||+-.|+|.... +...+ ..|.||+.+|++-+
T Consensus 184 D~Ivv-e-~EAGGHtg~~~~~~Llp~-i~~lrd~v~~~~~y--~~~VpViAAGGI~t~~~vaAAl-aLGAdgV~~GT~fl 257 (444)
T TIGR02814 184 DDICV-E-ADSGGHTDNRPLVVLLPA-IIRLRDTLMRRYGY--RKPIRVGAAGGIGTPEAAAAAF-MLGADFIVTGSVNQ 257 (444)
T ss_pred cEEEE-e-ccCCCCCCCCcHHHHHHH-HHHHHHHHhhcccC--CCCceEEEeCCCCCHHHHHHHH-HcCCcEEEeccHHH
Confidence 34454 7 68888 565555555444 33345555544442 3468999988886555 44444 47999999999755
No 166
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=76.06 E-value=7.2 Score=33.33 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEE
Q 039862 94 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGF 150 (173)
Q Consensus 94 G~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~ 150 (173)
|..++ +.+-...|++.+... ....|+-||+|+++|+.++. ..++.-+
T Consensus 149 Gg~~~---a~~g~~~L~~lv~~a------~~~~Im~GgGV~~~Nv~~l~-~tG~~~~ 195 (248)
T PRK11572 149 GQQQD---AEQGLSLIMELIAAS------DGPIIMAGAGVRLSNLHKFL-DAGVREV 195 (248)
T ss_pred CCCCC---HHHHHHHHHHHHHhc------CCCEEEeCCCCCHHHHHHHH-HcCCCEE
Confidence 44444 445566666665432 22339999999999999996 4665543
No 167
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=76.04 E-value=4.3 Score=36.09 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=34.8
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccC-ChHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFID 163 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl-~~~f~~ 163 (173)
++||+-+|+.+++.+.+++..-.+|.|-+|++.+ +|+|..
T Consensus 292 ~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~ 332 (362)
T PRK10605 292 HGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVA 332 (362)
T ss_pred CCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHH
Confidence 3689998889999999999988899999999988 587643
No 168
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=75.93 E-value=38 Score=29.96 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEccccccc-CCCCCCHHHHHHHHHHHHHH
Q 039862 34 VAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIG-TGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 34 v~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIG-tG~~a~~e~i~~~~~~Ir~~ 112 (173)
++.+.+.|++.+.-++...+.+ .+.+ ..-..|-.|=..|-| .|...+..-+.++...+++.
T Consensus 96 ~~~lk~~Gi~v~~~v~s~~~A~--------------~a~~----~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~ 157 (320)
T cd04743 96 ARALEAIGISTYLHVPSPGLLK--------------QFLE----NGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAA 157 (320)
T ss_pred HHHHHHCCCEEEEEeCCHHHHH--------------HHHH----cCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHh
Confidence 4556666777776666543321 1221 222355678888888 46555655666666666544
Q ss_pred HHhccchhhcCcceEEEcCCCCcccHHHHhcCCCC--------CEEEeecccC
Q 039862 113 LKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDV--------DGFLVGGASL 157 (173)
Q Consensus 113 ~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~v--------DG~LiG~asl 157 (173)
... ....++||+.-|+|...-....+...+- +|+.+|.+-|
T Consensus 158 ~~~----~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl 206 (320)
T cd04743 158 NGP----DKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYL 206 (320)
T ss_pred hcc----cccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHh
Confidence 221 1134799999888877764333333444 8999998765
No 169
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=75.41 E-value=2.3 Score=37.42 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=36.6
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-ChH-HHHHHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-KPE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~~~-f~~Ii~~~ 168 (173)
++||+.-|++ +++.+.+++..-.+|.|.+|++.+ +|+ +.++.+..
T Consensus 275 ~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~ 322 (337)
T PRK13523 275 NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKEL 322 (337)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHc
Confidence 4899998887 577799999988899999999888 588 56665544
No 170
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=75.37 E-value=23 Score=30.79 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=33.9
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-C-hH-HHHHHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-K-PE-FIDIIKS 167 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~-~~-f~~Ii~~ 167 (173)
++||+--|+| +++.+.+++. .+.|.|.||++.+ + |. |.+|.+.
T Consensus 280 ~ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 280 KIPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHHhc
Confidence 5888875555 7777888887 8999999999986 4 77 7777653
No 171
>PRK01060 endonuclease IV; Provisional
Probab=75.18 E-value=22 Score=29.41 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCeEE-EEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHH
Q 039862 29 FVGDKVAYALSRGLKVI-ACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHA 107 (173)
Q Consensus 29 ~i~~Kv~~al~~gl~pI-lCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~ 107 (173)
.+.+=++.|.+.|-..| ++.|............+.+.+.++.+++. ...+.|+.||.|.-++....+++++.++.+
T Consensus 90 ~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~---~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~ 166 (281)
T PRK01060 90 FLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDK---TQGVTIVLENTAGQGSELGRRFEELARIID 166 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhc---CCCCEEEEecCCCCCCcccCCHHHHHHHHH
Confidence 35555677778888654 44553211100001223333444444331 345899999998666555567888776665
Q ss_pred HH
Q 039862 108 EL 109 (173)
Q Consensus 108 ~I 109 (173)
.+
T Consensus 167 ~v 168 (281)
T PRK01060 167 GV 168 (281)
T ss_pred hc
Confidence 54
No 172
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.04 E-value=2.6 Score=36.39 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
..+|++++++++.++ .++|+.-=|+|+++|+.+++. .|+|++-+|...+++
T Consensus 217 ~~~~e~l~~~v~~~~------------~~i~leAsGGIt~~ni~~~a~-tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 217 ELSLDDMREAVRLTA------------GRAKLEASGGINESTLRVIAE-TGVDYISIGAMTKDV 267 (277)
T ss_pred CCCHHHHHHHHHHhC------------CCCcEEEECCCCHHHHHHHHH-cCCCEEEEChhhcCC
Confidence 358998888776542 258899999999999999986 999999999866653
No 173
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.04 E-value=2.7 Score=36.43 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+|+++++.+..++. ..++--=|+|+++|+.+++. .+||.+-+|...++
T Consensus 223 ~s~e~l~~av~~~~~------------~~~leaSGGI~~~ni~~yA~-tGVD~Is~Galths 271 (281)
T PRK06106 223 MTPDTLREAVAIVAG------------RAITEASGRITPETAPAIAA-SGVDLISVGWLTHS 271 (281)
T ss_pred CCHHHHHHHHHHhCC------------CceEEEECCCCHHHHHHHHh-cCCCEEEeChhhcC
Confidence 578999888886532 35688899999999999987 79999999986664
No 174
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.94 E-value=3.2 Score=36.18 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+|+++++++..++. ++.+.-=|+|+++|+.+++. .|||.+-+|.-.++
T Consensus 226 mspe~l~~av~~~~~------------~~~leaSGGI~~~ni~~yA~-tGVD~Is~galths 274 (290)
T PRK06559 226 MSLEQIEQAITLIAG------------RSRIECSGNIDMTTISRFRG-LAIDYVSSGSLTHS 274 (290)
T ss_pred CCHHHHHHHHHHhcC------------ceEEEEECCCCHHHHHHHHh-cCCCEEEeCccccC
Confidence 689999998887642 36788899999999999987 89999999986664
No 175
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=74.64 E-value=22 Score=30.27 Aligned_cols=59 Identities=7% Similarity=0.170 Sum_probs=43.9
Q ss_pred CCeEEEEcccc---------------cccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCCcccHHHHh
Q 039862 79 DNVVLAYEPVW---------------AIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVNGANCKELA 142 (173)
Q Consensus 79 ~~iiIAYEPvw---------------AIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~~~n~~~~~ 142 (173)
++.++.|.|.| .+.++..++|.++.++.+.||+. ++++|+ =-.++.+-++.+.
T Consensus 179 ~~~~v~~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~If~e~~~~~~~~~~ia 247 (286)
T cd01019 179 TKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEK-----------GATCVFAEPQFHPKIAETLA 247 (286)
T ss_pred CCeEEEecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHc-----------CCcEEEecCCCChHHHHHHH
Confidence 55688999988 23467889999999999998864 466655 4556666678888
Q ss_pred cCCCCC
Q 039862 143 AQPDVD 148 (173)
Q Consensus 143 ~~~~vD 148 (173)
+..++.
T Consensus 248 ~~~g~~ 253 (286)
T cd01019 248 EGTGAK 253 (286)
T ss_pred HhcCce
Confidence 777753
No 176
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=74.50 E-value=2.8 Score=36.48 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=33.3
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PEF 161 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~f 161 (173)
++||+.+|++ +++.+.+++..-.+|.+-+|++.+. |+|
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~ 329 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYW 329 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccH
Confidence 5899999998 7788999999888999999998884 775
No 177
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=74.39 E-value=3.1 Score=36.40 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
.+|+++++++..++ .++.+.-=|+|+.+|+.+++. .+||.+-+|.-.++.
T Consensus 237 ~s~e~~~~av~~~~------------~~~~ieaSGGI~~~ni~~yA~-tGVD~Is~galthsa 286 (296)
T PRK09016 237 FTTEQMREAVKRTN------------GRALLEVSGNVTLETLREFAE-TGVDFISVGALTKHV 286 (296)
T ss_pred CChHHHHHHHHhhc------------CCeEEEEECCCCHHHHHHHHh-cCCCEEEeCccccCC
Confidence 57888888777542 257799999999999999987 899999999866653
No 178
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.81 E-value=3.5 Score=36.01 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
.+|+++++++..++. ++.+--=|+||++|+.+++. .|||.+-+|.-.++.
T Consensus 234 mspe~l~~av~~~~~------------~~~lEaSGGIt~~ni~~yA~-tGVD~IS~galthsa 283 (294)
T PRK06978 234 FTLDMMREAVRVTAG------------RAVLEVSGGVNFDTVRAFAE-TGVDRISIGALTKDV 283 (294)
T ss_pred CCHHHHHHHHHhhcC------------CeEEEEECCCCHHHHHHHHh-cCCCEEEeCccccCC
Confidence 579999998876532 36788899999999999987 899999999876664
No 179
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=73.67 E-value=32 Score=28.20 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=47.6
Q ss_pred CCeEEEEcccccccCCCC----CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeec
Q 039862 79 DNVVLAYEPVWAIGTGKV----ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~----a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~ 154 (173)
.-.++.+-|+|.--|-.. ...+..++ +.+. ..++||+-=|+|+++|+.++.. .+.||+-+-+
T Consensus 122 gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~-------~~~~------~~~~PV~AiGGI~~~ni~~l~~-~Ga~GiAvis 187 (211)
T PRK03512 122 RPSYIALGHVFPTQTKQMPSAPQGLAQLAR-------HVER------LADYPTVAIGGISLERAPAVLA-TGVGSIAVVS 187 (211)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHH-------HHHh------cCCCCEEEECCCCHHHHHHHHH-cCCCEEEEhh
Confidence 346899999998865542 22333332 2211 1258999999999999999986 7899999999
Q ss_pred ccCC
Q 039862 155 ASLK 158 (173)
Q Consensus 155 asl~ 158 (173)
+-++
T Consensus 188 ai~~ 191 (211)
T PRK03512 188 AITQ 191 (211)
T ss_pred HhhC
Confidence 8775
No 180
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=73.00 E-value=3.9 Score=33.76 Aligned_cols=116 Identities=21% Similarity=0.288 Sum_probs=57.6
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
.+++++|++.+.+|=--+ =++-|....+++..+.. ++...+ =.... ...+..+.+ +||..+ ++ .++
T Consensus 79 ~~~~~~GadG~VfG~L~~---dg~iD~~~~~~Li~~a~-~~~~tF--HRAfD--~~~d~~~al-~~L~~l--G~---~rV 144 (201)
T PF03932_consen 79 RMLRELGADGFVFGALTE---DGEIDEEALEELIEAAG-GMPVTF--HRAFD--EVPDPEEAL-EQLIEL--GF---DRV 144 (201)
T ss_dssp HHHHHTT-SEEEE--BET---TSSB-HHHHHHHHHHHT-TSEEEE---GGGG--GSSTHHHHH-HHHHHH--T----SEE
T ss_pred HHHHHcCCCeeEEEeECC---CCCcCHHHHHHHHHhcC-CCeEEE--eCcHH--HhCCHHHHH-HHHHhc--CC---CEE
Confidence 468899999999997655 35567677777776654 666554 11111 111222222 222222 22 232
Q ss_pred EEEEcccccccCCCCCC-HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCE
Q 039862 82 VLAYEPVWAIGTGKVAT-PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDG 149 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~-~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG 149 (173)
.= +|.+++ .+-+. .+++.+.. . ...+.|+-||+|+++|+.++....++.=
T Consensus 145 LT---------SGg~~~a~~g~~----~L~~lv~~-a----~~~i~Im~GgGv~~~nv~~l~~~tg~~~ 195 (201)
T PF03932_consen 145 LT---------SGGAPTALEGIE----NLKELVEQ-A----KGRIEIMPGGGVRAENVPELVEETGVRE 195 (201)
T ss_dssp EE---------STTSSSTTTCHH----HHHHHHHH-H----TTSSEEEEESS--TTTHHHHHHHHT-SE
T ss_pred EC---------CCCCCCHHHHHH----HHHHHHHH-c----CCCcEEEecCCCCHHHHHHHHHhhCCeE
Confidence 11 122222 23332 23333322 1 3568899999999999999988766543
No 181
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=72.83 E-value=16 Score=29.90 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=50.6
Q ss_pred cchhhcCCCEEEEc-ccc-----cccc--cCCCH----HHHHHHHHHHHHCCCeEEEE-eCCCHHHHhcCChHHHHHHHH
Q 039862 2 EMLVNLSIPWVILG-HSE-----RRAL--LNESN----DFVGDKVAYALSRGLKVIAC-VGETLEQRESGSTVAVVAEQT 68 (173)
Q Consensus 2 ~mLkd~G~~~viiG-HSE-----RR~~--~~E~~----~~i~~Kv~~al~~gl~pIlC-vGE~~~~r~~~~~~~~l~~Ql 68 (173)
++|++.|++.+.++ ... +|.+ +.+.. +.+.+=++.|.+.|...|.| .|-........+..+...+.+
T Consensus 46 ~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l 125 (254)
T TIGR03234 46 ARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENL 125 (254)
T ss_pred HHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 47889999987663 111 1211 12221 33444566788899987765 342110000001112223333
Q ss_pred HHHHhccCCCCCeEEEEccc--ccc-cCCCCCCHHHHHHHHHHH
Q 039862 69 KAIAEKISNWDNVVLAYEPV--WAI-GTGKVATPAQAQEVHAEL 109 (173)
Q Consensus 69 ~~~l~~v~~~~~iiIAYEPv--wAI-GtG~~a~~e~i~~~~~~I 109 (173)
+.+..- .....+.+++||. |.. |+ -..+++++.++++.+
T Consensus 126 ~~l~~~-A~~~gi~l~lE~~~~~~~~~~-~l~t~~~~~~li~~v 167 (254)
T TIGR03234 126 RYAADA-LDRIGLTLLIEPINSFDMPGF-FLTTTEQALAVIDDV 167 (254)
T ss_pred HHHHHH-HHhcCCEEEEEECCcccCCCC-hhcCHHHHHHHHHHh
Confidence 333221 1134589999985 322 22 124666666555544
No 182
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=72.19 E-value=51 Score=27.74 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=73.5
Q ss_pred cchhhcCCCEEE-EcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVI-LGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~vi-iGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
+|..+.|++++- +|=+ .+++|.+=++.|.+.|....+=.=. ..+.+-..++++.+ ++ .
T Consensus 74 ~ma~~aGAd~~tV~g~A--------~~~TI~~~i~~A~~~~~~v~iDl~~-------~~~~~~~~~~l~~~--gv----d 132 (217)
T COG0269 74 RMAFEAGADWVTVLGAA--------DDATIKKAIKVAKEYGKEVQIDLIG-------VWDPEQRAKWLKEL--GV----D 132 (217)
T ss_pred HHHHHcCCCEEEEEecC--------CHHHHHHHHHHHHHcCCeEEEEeec-------CCCHHHHHHHHHHh--CC----C
Confidence 566777777653 3433 3467777788888888665432211 12333334455541 11 2
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.++---++=+==+|+.++.+.++. +|+.. ....++=-.|+++|+++..+...+ +|=|.+||+-.+
T Consensus 133 ~~~~H~g~D~q~~G~~~~~~~l~~----ik~~~--------~~g~~vAVaGGI~~~~i~~~~~~~-~~ivIvGraIt~ 197 (217)
T COG0269 133 QVILHRGRDAQAAGKSWGEDDLEK----IKKLS--------DLGAKVAVAGGITPEDIPLFKGIG-ADIVIVGRAITG 197 (217)
T ss_pred EEEEEecccHhhcCCCccHHHHHH----HHHhh--------ccCceEEEecCCCHHHHHHHhcCC-CCEEEECchhcC
Confidence 333334444433677776566555 33332 123678889999999988887754 999999998765
No 183
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.95 E-value=8.5 Score=32.36 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=32.1
Q ss_pred ceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccCC-hHHHHHHHH
Q 039862 125 TRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 167 (173)
Q Consensus 125 i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl~-~~f~~Ii~~ 167 (173)
.|+.+||+|.. +.++.++. .++|=+.||.++++ |+|++=+..
T Consensus 74 ~~v~vGGGIrs~e~~~~~l~-~Ga~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 74 EHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred CcEEEecCCCCHHHHHHHHH-CCCCEEEECchhhCCHHHHHHHHH
Confidence 58999999997 55566665 79999999999985 785443343
No 184
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=70.95 E-value=29 Score=30.20 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEccccccc-CCCCCCHHHHHHHHHHHHHH
Q 039862 34 VAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIG-TGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 34 v~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIG-tG~~a~~e~i~~~~~~Ir~~ 112 (173)
++.+.+.|+..+..|+...+.+ .+++ .....|..|-..|-| .|... +........+++.
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~--------------~a~~----~G~D~iv~qG~eAGGH~g~~~--~~~~~L~~~v~~~ 188 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREAR--------------KAAK----AGADAIVAQGPEAGGHRGFEV--GSTFSLLPQVRDA 188 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHH--------------HHHH----TT-SEEEEE-TTSSEE---SS--G-HHHHHHHHHHH
T ss_pred HHHHHHcCCccccccCCHHHHH--------------Hhhh----cCCCEEEEeccccCCCCCccc--cceeeHHHHHhhh
Confidence 5777788888888888765443 2222 123345567778888 44121 1223333444443
Q ss_pred HHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC
Q 039862 113 LKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 113 ~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl 157 (173)
+ ++||+-.|+|.... +...+. .+.||+.+|.+-+
T Consensus 189 ~----------~iPViaAGGI~dg~~iaaal~-lGA~gV~~GTrFl 223 (330)
T PF03060_consen 189 V----------DIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFL 223 (330)
T ss_dssp -----------SS-EEEESS--SHHHHHHHHH-CT-SEEEESHHHH
T ss_pred c----------CCcEEEecCcCCHHHHHHHHH-cCCCEeecCCeEE
Confidence 2 39999988887765 455554 7999999998655
No 185
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=70.76 E-value=9.1 Score=32.94 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=36.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCC-CCCEEEeeccc
Q 039862 88 VWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQP-DVDGFLVGGAS 156 (173)
Q Consensus 88 vwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~-~vDG~LiG~as 156 (173)
+--=||..=++.+.++++.+. .++||+|.|+|..-+ +.++.... ++.|+.||+|-
T Consensus 185 I~rDGtl~G~d~el~~~l~~~--------------~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 185 VDVEGKRLGIDEELVALLGEH--------------SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred EcCCCcccCCCHHHHHHHHhh--------------CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 333455555666655443322 259999999998766 45555543 79999999995
No 186
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=70.08 E-value=28 Score=29.38 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=43.8
Q ss_pred CCeEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCCcccHHHHh
Q 039862 79 DNVVLAYEPVWA---------------IGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVNGANCKELA 142 (173)
Q Consensus 79 ~~iiIAYEPvwA---------------IGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~~~n~~~~~ 142 (173)
++.+++|+|.|- +.+|..+++.++.++.+.||+. ++++|+ -=.+++.-++.++
T Consensus 171 ~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~if~e~~~~~~~~~~la 239 (282)
T cd01017 171 GKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKS-----------DVKYIFFEENASSKIAETLA 239 (282)
T ss_pred CCeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHc-----------CCCEEEEeCCCChHHHHHHH
Confidence 456889999774 3468889999999999998874 466555 5556666677777
Q ss_pred cCCCCCE
Q 039862 143 AQPDVDG 149 (173)
Q Consensus 143 ~~~~vDG 149 (173)
+..++.=
T Consensus 240 ~~~g~~v 246 (282)
T cd01017 240 KETGAKL 246 (282)
T ss_pred HHcCCcE
Confidence 7776543
No 187
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=70.02 E-value=35 Score=28.10 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=51.7
Q ss_pred cchhhcCCCEEEE--ccc-----cccccc-CCCH----HHHHHHHHHHHHCCCeEEEEe-CCCHHHHhcCChHHHHHHHH
Q 039862 2 EMLVNLSIPWVIL--GHS-----ERRALL-NESN----DFVGDKVAYALSRGLKVIACV-GETLEQRESGSTVAVVAEQT 68 (173)
Q Consensus 2 ~mLkd~G~~~vii--GHS-----ERR~~~-~E~~----~~i~~Kv~~al~~gl~pIlCv-GE~~~~r~~~~~~~~l~~Ql 68 (173)
++|++.|.+.+.. +++ +|+..+ .+.. +.+.+-++.|.+.|...|.|. |............+.+.+.|
T Consensus 47 ~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l 126 (258)
T PRK09997 47 QVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENL 126 (258)
T ss_pred HHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Confidence 4688999998763 232 222111 1212 335666788999999988774 32111000011123333344
Q ss_pred HHHHhccCCCCCeEEEEccc-c-cccCCCCCCHHHHHHHHHH
Q 039862 69 KAIAEKISNWDNVVLAYEPV-W-AIGTGKVATPAQAQEVHAE 108 (173)
Q Consensus 69 ~~~l~~v~~~~~iiIAYEPv-w-AIGtG~~a~~e~i~~~~~~ 108 (173)
..+.... ....+.++|||. + ...+....++++..++++.
T Consensus 127 ~~l~~~a-~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~ 167 (258)
T PRK09997 127 RYAANML-MKEDILLLIEPINHFDIPGFHLTGTRQALKLIDD 167 (258)
T ss_pred HHHHHHH-HHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHH
Confidence 3332211 134688999984 2 1111222455555554443
No 188
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.01 E-value=3.2 Score=36.54 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=32.3
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-ChHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-KPEF 161 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~~~f 161 (173)
++||+.-|++ +++.+.+++.. ++|++.+|++.+ +|+|
T Consensus 284 ~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl 322 (353)
T cd04735 284 RLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDW 322 (353)
T ss_pred CCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccH
Confidence 5899998888 78999999987 899999999987 4774
No 189
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.99 E-value=87 Score=29.28 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeec
Q 039862 98 TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGG 154 (173)
Q Consensus 98 ~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~ 154 (173)
...-+.++.++.|+++.. + +..+||+.-|+|...- +..-+. .+-|.+++|+
T Consensus 331 ~~~ai~~~~~a~~~~~~~-~----g~~~~viadgGir~~gdi~KAla-~GA~~vm~G~ 382 (502)
T PRK07107 331 QATALIEVAKARDEYFEE-T----GVYIPICSDGGIVYDYHMTLALA-MGADFIMLGR 382 (502)
T ss_pred HHHHHHHHHHHHHHHHhh-c----CCcceEEEcCCCCchhHHHHHHH-cCCCeeeeCh
Confidence 334445555555444432 1 3458999977776554 333333 7899999998
No 190
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=69.63 E-value=5 Score=28.89 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=42.2
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcC-CCCCEEEeecc
Q 039862 78 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQ-PDVDGFLVGGA 155 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~-~~vDG~LiG~a 155 (173)
.++.+|+.-= -.+.+.+...++.+.+|+. ..+++++-||.--..+..+++.. +++|-+.+|..
T Consensus 50 ~~pd~V~iS~------~~~~~~~~~~~l~~~~k~~---------~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 50 ERPDVVGISV------SMTPNLPEAKRLARAIKER---------NPNIPIVVGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp TTCSEEEEEE------SSSTHHHHHHHHHHHHHTT---------CTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred CCCcEEEEEc------cCcCcHHHHHHHHHHHHhc---------CCCCEEEEECCchhcChHHHhccCcCcceecCCCh
Confidence 3555666511 1334455555555554432 45799999998877777887776 99999999976
No 191
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.07 E-value=7.5 Score=32.69 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=28.8
Q ss_pred cceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccCChH
Q 039862 124 STRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 124 ~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
.+||+-=|+|.. +.+.+++. .+.|||.||+++++..
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLK-AGADFVSVARAILKGN 227 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhccCC
Confidence 388888666655 66888887 7999999999998753
No 192
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=69.00 E-value=38 Score=28.91 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=64.0
Q ss_pred hhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEE
Q 039862 5 VNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLA 84 (173)
Q Consensus 5 kd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIA 84 (173)
+.+|++.|++=-+ .+.+ +.+..=+..|.+.||.|++=|-...| ++.++. ...-+|.
T Consensus 128 ~~~GADaVLLI~~----~L~~--~~l~~l~~~a~~lGle~lVEVh~~~E--------------l~~al~----~~a~iiG 183 (254)
T PF00218_consen 128 RAAGADAVLLIAA----ILSD--DQLEELLELAHSLGLEALVEVHNEEE--------------LERALE----AGADIIG 183 (254)
T ss_dssp HHTT-SEEEEEGG----GSGH--HHHHHHHHHHHHTT-EEEEEESSHHH--------------HHHHHH----TT-SEEE
T ss_pred HHcCCCEeehhHH----hCCH--HHHHHHHHHHHHcCCCeEEEECCHHH--------------HHHHHH----cCCCEEE
Confidence 4567777776432 1211 23344478999999999998876543 333443 2223443
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 85 YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 85 YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.= -|=..|-.+ +++...++...|. .++.++--++|+.......+...|+||+|||.+-++
T Consensus 184 IN-nRdL~tf~v-d~~~~~~l~~~ip------------~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 184 IN-NRDLKTFEV-DLNRTEELAPLIP------------KDVIVISESGIKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp EE-SBCTTTCCB-HTHHHHHHHCHSH------------TTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred Ee-CccccCccc-ChHHHHHHHhhCc------------cceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 31 233333332 3333333322222 236677777787766677777899999999998775
No 193
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=68.29 E-value=70 Score=26.72 Aligned_cols=77 Identities=14% Similarity=0.349 Sum_probs=50.8
Q ss_pred CCeEEEEcccc------------cc-cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEc-CCCCcccHHHHhcC
Q 039862 79 DNVVLAYEPVW------------AI-GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYG-GSVNGANCKELAAQ 144 (173)
Q Consensus 79 ~~iiIAYEPvw------------AI-GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYG-GSV~~~n~~~~~~~ 144 (173)
++.+|+|+|.| .+ +.|..+|+.++.++.+.||+. ++++++- =..+++-+..+.+.
T Consensus 170 ~~~~v~~H~af~Y~~~~ygl~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~if~e~~~~~~~~~~la~~ 238 (266)
T cd01018 170 QRAFMVYHPAWGYFARDYGLTQIPIEEEGKEPSPADLKRLIDLAKEK-----------GVRVVFVQPQFSTKSAEAIARE 238 (266)
T ss_pred CCeEEEECchhHHHHHHcCCEEEecCCCCCCCCHHHHHHHHHHHHHc-----------CCCEEEEcCCCCcHHHHHHHHH
Confidence 45688999988 22 467779999999999998874 4666654 45555556777777
Q ss_pred CCCCEEEeecccCChHHHHHHHHH
Q 039862 145 PDVDGFLVGGASLKPEFIDIIKSA 168 (173)
Q Consensus 145 ~~vDG~LiG~asl~~~f~~Ii~~~ 168 (173)
.|+.=+-+- .+..+|.++.+..
T Consensus 239 ~g~~v~~ld--~~~~~y~~~m~~n 260 (266)
T cd01018 239 IGAKVVTID--PLAADWEENLLKV 260 (266)
T ss_pred cCCeEEEeC--CcHHHHHHHHHHH
Confidence 776433322 2223476666543
No 194
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=68.11 E-value=7.5 Score=34.70 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=33.7
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC-hH-HHHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK-PE-FIDI 164 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~-~~-f~~I 164 (173)
++||+.-|++ +++.+.+++..-.+|.|.+|++.+. |+ +.++
T Consensus 305 ~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~ 348 (382)
T cd02931 305 DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKI 348 (382)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHH
Confidence 4789998888 6677999999888999999999884 88 4444
No 195
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=67.98 E-value=6.4 Score=35.38 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=30.4
Q ss_pred ceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC-hH-H
Q 039862 125 TRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK-PE-F 161 (173)
Q Consensus 125 i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~-~~-f 161 (173)
+|++-=|+|. .+.+...+...|+|||++|++.|. |. |
T Consensus 204 ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335|consen 204 IPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF 243 (358)
T ss_pred CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh
Confidence 8899877777 455677777799999999999995 66 8
No 196
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=67.80 E-value=3.7 Score=36.12 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 98 TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 98 ~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
+|+++.+.+..++ ...++--=|+||++|+.+++. .|||.+-+|.-.++
T Consensus 248 ~~e~l~~av~~~~------------~~~~lEaSGGIt~~ni~~yA~-tGVD~Is~Galths 295 (308)
T PLN02716 248 DVSMLKEAVELIN------------GRFETEASGNVTLDTVHKIGQ-TGVTYISSGALTHS 295 (308)
T ss_pred CHHHHHHHHHhhC------------CCceEEEECCCCHHHHHHHHH-cCCCEEEeCccccC
Confidence 5666666665443 236688999999999999986 89999999987664
No 197
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=67.34 E-value=8.3 Score=33.00 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC-hHHH
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFI 162 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~-~~f~ 162 (173)
.+||++-=.-+...|.+.-.+. .||+-+||+|+.-...+.+-..+.|=+=|.++++. |+|.
T Consensus 52 ItAs~~gr~~~~~vv~r~A~~v-------fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI 113 (256)
T COG0107 52 ITASSEGRETMLDVVERVAEQV-------FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELI 113 (256)
T ss_pred cccccccchhHHHHHHHHHhhc-------eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHH
Confidence 4555555344455555543333 39999999999876555444599999999999996 8854
No 198
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=67.03 E-value=79 Score=26.88 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=38.1
Q ss_pred CcchhhcCCCEEEEcccccccc---cCCCHHHH-----------------HHHHHHHHHCCCeEE---EEeCCCHHHHhc
Q 039862 1 AEMLVNLSIPWVILGHSERRAL---LNESNDFV-----------------GDKVAYALSRGLKVI---ACVGETLEQRES 57 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~---~~E~~~~i-----------------~~Kv~~al~~gl~pI---lCvGE~~~~r~~ 57 (173)
+++|-++|++++.+||-=..+. +.+.++.+ .+=+++|++.|+..| +-+-+....++-
T Consensus 26 ~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~ 105 (274)
T cd07938 26 IDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLRGAERALAAGVDEVAVFVSASETFSQKNI 105 (274)
T ss_pred HHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHc
Confidence 3578999999999994211110 11111110 122677888885543 222333335566
Q ss_pred CChHHHHHHHHHHHHh
Q 039862 58 GSTVAVVAEQTKAIAE 73 (173)
Q Consensus 58 ~~~~~~l~~Ql~~~l~ 73 (173)
+.+.+...+++...+.
T Consensus 106 ~~s~~~~~~~~~~~v~ 121 (274)
T cd07938 106 NCSIAESLERFEPVAE 121 (274)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666555555544443
No 199
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=66.32 E-value=15 Score=31.36 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEc-CCCCcccHHHH---hcCCCCCEEEeec
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYG-GSVNGANCKEL---AAQPDVDGFLVGG 154 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYG-GSV~~~n~~~~---~~~~~vDG~LiG~ 154 (173)
..|.|+-.++++...+.. +.++||+.| |+.+.+.+.++ +...++||+++.-
T Consensus 50 ~Lt~eEr~~~~~~~~~~~--------~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 50 MLSTEEKKEIFRIAKDEA--------KDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred cCCHHHHHHHHHHHHHHh--------CCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 467888777777766653 346999999 66777776554 4578999999965
No 200
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=65.96 E-value=39 Score=29.69 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=35.3
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-C-hH-HHHHHHHHhh
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-K-PE-FIDIIKSATV 170 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~-~~-f~~Ii~~~~~ 170 (173)
++||+.-|+| +.+.+.+++. .+.|.|.||++.+ + |. |.+|.+.+..
T Consensus 289 ~ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~~L~~ 338 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIVRGLAR 338 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 5899975555 5566788887 8999999999986 4 77 8888776644
No 201
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=65.66 E-value=89 Score=26.95 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=67.6
Q ss_pred chhhcCCCEEEE-ccccccccc-CCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHh-ccCCCC
Q 039862 3 MLVNLSIPWVIL-GHSERRALL-NESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWD 79 (173)
Q Consensus 3 mLkd~G~~~vii-GHSERR~~~-~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~-~v~~~~ 79 (173)
-|.+.||+.+++ |++=-=..+ .|--..+.+.+..+....+..|+++|... +.+.+ ++.+.+-+ +. .
T Consensus 37 ~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~-------t~~ai-~~a~~A~~~Ga---d 105 (309)
T cd00952 37 RLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLN-------TRDTI-ARTRALLDLGA---D 105 (309)
T ss_pred HHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCC-------HHHHH-HHHHHHHHhCC---C
Confidence 366789999876 553111111 11112333445555567799999999642 22221 22222221 21 1
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcce-EEE------cCCCCcccHHHHhcCCCCCEEEe
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTR-IIY------GGSVNGANCKELAAQPDVDGFLV 152 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~-ilY------GGSV~~~n~~~~~~~~~vDG~Li 152 (173)
-++..=|-| -+++.+.+-+-.+.|-+. ...+| ++| |-.+.++-..++++.++|-|+=-
T Consensus 106 -~vlv~~P~y-----~~~~~~~l~~yf~~va~a---------~~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKd 170 (309)
T cd00952 106 -GTMLGRPMW-----LPLDVDTAVQFYRDVAEA---------VPEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKY 170 (309)
T ss_pred -EEEECCCcC-----CCCCHHHHHHHHHHHHHh---------CCCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEe
Confidence 233333544 124455544433333221 11233 333 66788888888887787777654
Q ss_pred ecccCCh-HHHHHHHH
Q 039862 153 GGASLKP-EFIDIIKS 167 (173)
Q Consensus 153 G~asl~~-~f~~Ii~~ 167 (173)
. + +. .|..+++.
T Consensus 171 s--s-d~~~~~~~i~~ 183 (309)
T cd00952 171 L--G-DIGALLSDLAA 183 (309)
T ss_pred c--C-ChHHHHHHHHH
Confidence 3 3 42 35555543
No 202
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.38 E-value=19 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.9
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++++++.||...++. .+.+...++|+++=++.+.+
T Consensus 80 ~~i~i~~GG~~~~~~-~~~~~~~G~d~~~~~~~~~~ 114 (122)
T cd02071 80 GDILVVGGGIIPPED-YELLKEMGVAEIFGPGTSIE 114 (122)
T ss_pred CCCEEEEECCCCHHH-HHHHHHCCCCEEECCCCCHH
Confidence 368999999876655 44555688999998888765
No 203
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=65.01 E-value=6.3 Score=32.30 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=20.8
Q ss_pred ceEEEcCCCCcccHHHHhc-CCCCCEEEe
Q 039862 125 TRIIYGGSVNGANCKELAA-QPDVDGFLV 152 (173)
Q Consensus 125 i~ilYGGSV~~~n~~~~~~-~~~vDG~Li 152 (173)
.|++..|+++|+|+.+++. ...-+|+=|
T Consensus 153 ~p~iLAGGL~peNV~~a~~~~~~p~gVDv 181 (207)
T PRK13958 153 IPYLIAGGINSENIQTVEQLKLSHQGYDI 181 (207)
T ss_pred CCEEEECCCCHHHHHHHHhcCCCCCEEEc
Confidence 4799999999999999764 334455544
No 204
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=64.79 E-value=24 Score=27.00 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-----cccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-----GANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-----~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+...+.++.+.+|+.. ..+++|+.||++. +....+.+...++|.++-++..++
T Consensus 66 ~~~~~~~~~~~~L~~~~--------~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~ 124 (137)
T PRK02261 66 HGEIDCRGLREKCIEAG--------LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPE 124 (137)
T ss_pred cCHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHH
Confidence 45667777777766541 2358999999983 233445677788999999888654
No 205
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=63.42 E-value=56 Score=26.89 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=53.6
Q ss_pred chhhcCCCEEEEcccccccccCCCHHH--------HHHHHHHHHHCCCeEEEE-eCCCHHHHhcCChHHHHHHHHHHHHh
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDF--------VGDKVAYALSRGLKVIAC-VGETLEQRESGSTVAVVAEQTKAIAE 73 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~--------i~~Kv~~al~~gl~pIlC-vGE~~~~r~~~~~~~~l~~Ql~~~l~ 73 (173)
.+++.|++.++ |+-.-..+.-.++. +.+=+..|.+.|...|++ .|-.. .....+..+.+.+-+..+..
T Consensus 53 ~~~~~gl~ls~--h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~-~~~~e~~~~~~~~~l~~l~~ 129 (273)
T smart00518 53 ALKENNIDVSV--HAPYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYL-KQSKEEALNRIIESLNEVID 129 (273)
T ss_pred HHHHcCCCEEE--ECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHHHHHHHh
Confidence 46778888554 54222222333333 333466777888876665 44221 00000112222233333333
Q ss_pred ccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHH
Q 039862 74 KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 110 (173)
Q Consensus 74 ~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir 110 (173)
....+.++.|+.+--++-...+++++.++.+.++
T Consensus 130 ---~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~ 163 (273)
T smart00518 130 ---ETKGVVILLETTAGKGSQIGSTFEDLKEIIDLIK 163 (273)
T ss_pred ---ccCCcEEEEeccCCCCCccCCCHHHHHHHHHhcC
Confidence 1345889999987555544457888888877764
No 206
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=63.12 E-value=6.2 Score=29.88 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=26.7
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
-+++-..|+|++.-+.+.+. .|.|||||.+.-.
T Consensus 31 iIrvpC~Grv~~~~il~Af~-~GADGV~V~gC~~ 63 (124)
T PF02662_consen 31 IIRVPCSGRVDPEFILRAFE-KGADGVLVAGCHP 63 (124)
T ss_pred EEEccCCCccCHHHHHHHHH-cCCCEEEEeCCCC
Confidence 45566899999999888887 5899999966543
No 207
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=62.83 E-value=94 Score=26.24 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=70.7
Q ss_pred chhhcCCCEEE-Eccc-ccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 3 MLVNLSIPWVI-LGHS-ERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 3 mLkd~G~~~vi-iGHS-ERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
.|.+.|+++++ .|++ |--.+=-|.-..+.+.+..+.+..+..+.++|.... .+ ..++.+.+.. . .-.
T Consensus 30 ~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~-------~~-~i~~a~~a~~-~--G~d 98 (292)
T PRK03170 30 YLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNST-------AE-AIELTKFAEK-A--GAD 98 (292)
T ss_pred HHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchH-------HH-HHHHHHHHHH-c--CCC
Confidence 46778999987 4553 221111111122334445555556788888887421 11 2233333222 1 112
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcce-EEE------cCCCCcccHHHHhcCCCCCEEEee
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTR-IIY------GGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~-ilY------GGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
-++..=|.|. .++++.+- ++.++.... .++| ++| |=.++++-..++.+.++|-|+=-+
T Consensus 99 ~v~~~pP~~~-----~~~~~~i~---~~~~~ia~~-------~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s 163 (292)
T PRK03170 99 GALVVTPYYN-----KPTQEGLY---QHFKAIAEA-------TDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEA 163 (292)
T ss_pred EEEECCCcCC-----CCCHHHHH---HHHHHHHhc-------CCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEEC
Confidence 3444546652 23454444 444443321 1244 344 667888889999888888777654
Q ss_pred cccCC-hHHHHHHHH
Q 039862 154 GASLK-PEFIDIIKS 167 (173)
Q Consensus 154 ~asl~-~~f~~Ii~~ 167 (173)
+ -+ ..|..+++.
T Consensus 164 ~--~d~~~~~~~~~~ 176 (292)
T PRK03170 164 T--GDLERVSELIEL 176 (292)
T ss_pred C--CCHHHHHHHHHh
Confidence 3 34 336666543
No 208
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=62.74 E-value=22 Score=30.67 Aligned_cols=68 Identities=28% Similarity=0.340 Sum_probs=47.5
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEc-CCCCcccHHHHh---cCCCCCEEEeecccCC--------
Q 039862 93 TGKV--ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYG-GSVNGANCKELA---AQPDVDGFLVGGASLK-------- 158 (173)
Q Consensus 93 tG~~--a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYG-GSV~~~n~~~~~---~~~~vDG~LiG~asl~-------- 158 (173)
||.. .|+++-.++.+..++.. +..+||+-| ||.+.+++.++. ...|+||+|+=-=...
T Consensus 48 tGE~~~Ls~eEr~~v~~~~v~~~--------~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~ 119 (299)
T COG0329 48 TGESPTLTLEERKEVLEAVVEAV--------GGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLY 119 (299)
T ss_pred CccchhcCHHHHHHHHHHHHHHH--------CCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHH
Confidence 4444 67888888888877764 456899986 555577765554 5889999999653332
Q ss_pred hHHHHHHHHH
Q 039862 159 PEFIDIIKSA 168 (173)
Q Consensus 159 ~~f~~Ii~~~ 168 (173)
.+|..|++.+
T Consensus 120 ~hf~~ia~a~ 129 (299)
T COG0329 120 AHFKAIAEAV 129 (299)
T ss_pred HHHHHHHHhc
Confidence 2377777765
No 209
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=62.56 E-value=30 Score=26.50 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=56.5
Q ss_pred cchhhcCCCEEEEccccccccc-----CCC------HHHHHHHHHHHHHCCCeEEEEeCC---CHHHHhcCChHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHSERRALL-----NES------NDFVGDKVAYALSRGLKVIACVGE---TLEQRESGSTVAVVAEQ 67 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~-----~E~------~~~i~~Kv~~al~~gl~pIlCvGE---~~~~r~~~~~~~~l~~Q 67 (173)
+.+++.|++-+-+.-..+...- .+. .+.+.+-++.|...|...+..-.- ...........+.+.+-
T Consensus 34 ~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 113 (213)
T PF01261_consen 34 RLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAEN 113 (213)
T ss_dssp HHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHH
Confidence 3577888885555444443331 122 567777888999999888887732 21111111223333333
Q ss_pred HHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHH
Q 039862 68 TKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAEL 109 (173)
Q Consensus 68 l~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~I 109 (173)
++.+.+... ...+.|++||..--.+....+.+++.++++.+
T Consensus 114 l~~l~~~a~-~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~ 154 (213)
T PF01261_consen 114 LRELAEIAE-EYGVRIALENHPGPFSETPFSVEEIYRLLEEV 154 (213)
T ss_dssp HHHHHHHHH-HHTSEEEEE-SSSSSSSEESSHHHHHHHHHHH
T ss_pred HHHHHhhhh-hhcceEEEecccCccccchhhHHHHHHHHhhc
Confidence 333333211 22488999998755544444445555544443
No 210
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=61.88 E-value=39 Score=28.97 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=35.3
Q ss_pred cceEEEcCC-CCcccHHHHhcCCCCCEEEeecccCC--hH-HHHHHHHHh
Q 039862 124 STRIIYGGS-VNGANCKELAAQPDVDGFLVGGASLK--PE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGS-V~~~n~~~~~~~~~vDG~LiG~asl~--~~-f~~Ii~~~~ 169 (173)
++||+-=|+ .+.+.+.+++. .+.|+|.||++.+. |. |.+|++.+.
T Consensus 243 ~ipIig~GGI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 291 (294)
T cd04741 243 EIQIIGVGGVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIEKELE 291 (294)
T ss_pred CCCEEEeCCCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHHHHHH
Confidence 588988444 45566788886 89999999999884 77 999887764
No 211
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=61.76 E-value=4.3 Score=34.73 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=19.9
Q ss_pred cccHHHHhcCCCCCEEEeecccC
Q 039862 135 GANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 135 ~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.+|..+|+...+|||+|||-+-|
T Consensus 157 l~nLDaIaaveGVDgvFiGPaDL 179 (255)
T COG3836 157 LDNLDAIAAVEGVDGVFIGPADL 179 (255)
T ss_pred HHHHHHHHccCCCCeEEECHHHH
Confidence 47889999999999999997644
No 212
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=61.65 E-value=13 Score=34.01 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhccchhh---c-----CcceEEEcCCCCcccHHHHhc-----CCCCC--EEEeecccCC
Q 039862 103 QEVHAELRKWLKDNVSAEV---A-----ASTRIIYGGSVNGANCKELAA-----QPDVD--GFLVGGASLK 158 (173)
Q Consensus 103 ~~~~~~Ir~~~~~~~~~~~---~-----~~i~ilYGGSV~~~n~~~~~~-----~~~vD--G~LiG~asl~ 158 (173)
.++....|+.+.+.||..+ + ..++|+||++++.+.+.+++. --.+| ++=||+.-+.
T Consensus 297 ~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~L~~~G~~~dNi~fGvGt~l~q 367 (407)
T cd01569 297 VDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERLKAKGFASENIVFGMGGGLLQ 367 (407)
T ss_pred HHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHHHHHCCCccccceEecCcccee
Confidence 3444556666666554332 2 489999999999999997554 45589 8888887653
No 213
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=61.55 E-value=14 Score=32.16 Aligned_cols=52 Identities=29% Similarity=0.288 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 98 TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 98 ~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
+|+.++++.+.++.. + .+++.|..=|++|++|+.++.+. ++|.+=||+.-++
T Consensus 227 ~~~~~~~~~~~l~~~-----g---~~~~~ieaSGgI~~~~i~~~a~~-gvD~isvGs~~~~ 278 (302)
T cd01571 227 FRYLIREVRWALDIR-----G---YKHVKIFVSGGLDEEDIKELEDV-GVDAFGVGTAISK 278 (302)
T ss_pred HHHHHHHHHHHHHhC-----C---CCCeEEEEeCCCCHHHHHHHHHc-CCCEEECCcccCC
Confidence 477777777766542 1 14578999999999999999884 6999999987654
No 214
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=61.50 E-value=9 Score=32.60 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=24.7
Q ss_pred cceEEE---cCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIY---GGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilY---GGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+|++- ||--+|.. ..++-|.++||+|||+.-.+
T Consensus 207 rlPVV~FAaGGvaTPAD-AALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 207 RLPVVNFAAGGVATPAD-AALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred CCceEEecccCcCChhH-HHHHHHcCCCeEEecccccc
Confidence 455542 55555555 66777899999999997776
No 215
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=61.20 E-value=78 Score=25.97 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCHHHHh--cCCh---HHHHHHHHHHHHhccCCCCCeEEEEcccccccCCC-CCCHH
Q 039862 27 NDFVGDKVAYALSRGLKVIACVGETLEQRE--SGST---VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGK-VATPA 100 (173)
Q Consensus 27 ~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~--~~~~---~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~-~a~~e 100 (173)
.+.....++.+.+.|+++++|||-...... ...+ .+...+++...+... .+.-+-|-||+.-.-+.+. +.+.+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y-glDGiDiD~E~~~~~~~~~~~~~~~ 128 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY-GLDGVDFDDEYSGYGKNGTSQPSNE 128 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCceEEeeeecccCCCCCCcchHH
Confidence 355566778888899999999996432110 0111 122223333333321 2667889999875422222 23445
Q ss_pred HHHHHHHHHHHHH
Q 039862 101 QAQEVHAELRKWL 113 (173)
Q Consensus 101 ~i~~~~~~Ir~~~ 113 (173)
.....++.+|+.+
T Consensus 129 ~~~~lv~~Lr~~~ 141 (255)
T cd06542 129 AFVRLIKELRKYM 141 (255)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555554
No 216
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=60.58 E-value=1e+02 Score=25.85 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred cchhhcCCCEEEEccc--cccc-ccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCC
Q 039862 2 EMLVNLSIPWVILGHS--ERRA-LLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW 78 (173)
Q Consensus 2 ~mLkd~G~~~viiGHS--ERR~-~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~ 78 (173)
+.|.+.|++.++++.| |--. ...|-. .+-+.+..+....+..+.++|.+. +.+. .++.+.+.. . .
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~~~lt~~Er~-~l~~~~~~~~~~~~~vi~gv~~~~-------~~~~-~~~a~~a~~-~--G 95 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGESPTLSDEEHE-AVIEAVVEAVNGRVPVIAGTGSNN-------TAEA-IELTKRAEK-A--G 95 (284)
T ss_pred HHHHHcCCCEEEECCCCcchhhCCHHHHH-HHHHHHHHHhCCCCcEEeccCCcc-------HHHH-HHHHHHHHH-c--C
Confidence 3577899999887655 2211 111111 233334444445677788998742 2222 233333322 1 1
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcce-EEE------cCCCCcccHHHHhcCCCCCEEE
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTR-IIY------GGSVNGANCKELAAQPDVDGFL 151 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~-ilY------GGSV~~~n~~~~~~~~~vDG~L 151 (173)
-.-++..=|.| -.++.+++ .++.++.... .++| ++| |=.++++-..+++..++|-|+=
T Consensus 96 ~d~v~~~~P~~-----~~~~~~~l---~~~~~~ia~~-------~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK 160 (284)
T cd00950 96 ADAALVVTPYY-----NKPSQEGL---YAHFKAIAEA-------TDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIK 160 (284)
T ss_pred CCEEEEccccc-----CCCCHHHH---HHHHHHHHhc-------CCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEE
Confidence 22334444655 12445544 4444444321 1344 445 5578888899999888888887
Q ss_pred eecccCCh-HHHHHHHH
Q 039862 152 VGGASLKP-EFIDIIKS 167 (173)
Q Consensus 152 iG~asl~~-~f~~Ii~~ 167 (173)
-.+. +. .|.++.+.
T Consensus 161 ~s~~--~~~~~~~~~~~ 175 (284)
T cd00950 161 EATG--DLDRVSELIAL 175 (284)
T ss_pred ECCC--CHHHHHHHHHh
Confidence 5433 43 36666554
No 217
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=60.50 E-value=24 Score=29.70 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+|+++......++.. ..+......++.|+.-|+++++|+.++.. .++|.+=+|..-++
T Consensus 214 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~Sggi~~~~i~~~~~-~gvd~~gvG~~~~~ 272 (281)
T cd00516 214 GSPEELDPAVLILKAR--AHLDGKGLPRVKIEASGGLDEENIRAYAE-TGVDVFGVGTLLHS 272 (281)
T ss_pred CChHHHHHHHHHHHHH--HhhhhcCCCceEEEEeCCCCHHHHHHHHH-cCCCEEEeCccccc
Confidence 5567777777766532 11111113568899999999999999877 56999999986554
No 218
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=60.05 E-value=21 Score=32.82 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=45.2
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCC---EEEeecc
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVD---GFLVGGA 155 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vD---G~LiG~a 155 (173)
...+|++-|+|.-.|-....|-. .+.++.+.. ...+||+-=|+|+++|+.+++. .++| |+-++++
T Consensus 410 gadyi~~gpif~t~tk~~~~~~g----~~~~~~~~~-------~~~~Pv~aiGGI~~~~~~~~~~-~G~~~~~gvav~~~ 477 (502)
T PLN02898 410 GADYIGCGGVFPTNTKANNKTIG----LDGLREVCE-------ASKLPVVAIGGISASNAASVME-SGAPNLKGVAVVSA 477 (502)
T ss_pred CCCEEEECCeecCCCCCCCCCCC----HHHHHHHHH-------cCCCCEEEECCCCHHHHHHHHH-cCCCcCceEEEEeH
Confidence 45688888988876532111111 223333321 1258999989999999998876 4666 9999998
Q ss_pred cCC
Q 039862 156 SLK 158 (173)
Q Consensus 156 sl~ 158 (173)
-++
T Consensus 478 i~~ 480 (502)
T PLN02898 478 LFD 480 (502)
T ss_pred Hhc
Confidence 875
No 219
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=59.81 E-value=15 Score=32.52 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
|++..+.+..+|+.+.+. | ..++.|..=|+++.+|+.++... +|.+=||+.-++
T Consensus 240 ~g~l~~~v~~vr~~ld~~-g---~~~v~IeaSGgI~~~ni~~ya~~--vD~isvGs~~~~ 293 (343)
T PRK08662 240 RGNFRKIVREVRWTLDIR-G---YEHVKIFVSGGLDPERIRELRDV--VDGFGVGTYISF 293 (343)
T ss_pred CccHHHHHHHHHHHHHhc-C---CCCeEEEEeCCCCHHHHHHHHHh--CCEEEcCccccC
Confidence 588888888888776443 1 14578999999999999999987 999989986554
No 220
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=59.69 E-value=63 Score=27.29 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=37.4
Q ss_pred CCeEEEEcccc---------------cccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCC-CCcccHHHHh
Q 039862 79 DNVVLAYEPVW---------------AIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS-VNGANCKELA 142 (173)
Q Consensus 79 ~~iiIAYEPvw---------------AIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS-V~~~n~~~~~ 142 (173)
.+.++.|.|.| .+..|..+||.++.++.+.||+. ++++++-=+ .++.-++.+.
T Consensus 161 ~~~~~t~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~if~e~~~~~~~~~~l~ 229 (276)
T cd01016 161 QRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVER-----------KIKAIFVESSVNQKSIEALQ 229 (276)
T ss_pred cCeEEEecCcHHHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHc-----------CCCEEEEeCCCCHHHHHHHH
Confidence 46788888754 34567779999999999999874 477776544 4444445553
Q ss_pred c
Q 039862 143 A 143 (173)
Q Consensus 143 ~ 143 (173)
.
T Consensus 230 ~ 230 (276)
T cd01016 230 D 230 (276)
T ss_pred H
Confidence 3
No 221
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.53 E-value=30 Score=25.63 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=25.6
Q ss_pred EEEEeCCCHHHH------hcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCC
Q 039862 44 VIACVGETLEQR------ESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKV 96 (173)
Q Consensus 44 pIlCvGE~~~~r------~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~ 96 (173)
.++|+|.+...- ..|.+...+.+++...+.. .++-+| +|.+||.-.
T Consensus 2 ~~~~~Gds~~~g~~~n~g~~G~~~~~~~~~~~~~~~~---~~pd~v----vi~~G~ND~ 53 (157)
T cd01833 2 RIMPLGDSITWGDKDHEGHSGYLIDQIAAAAADWVLA---AKPDVV----LLHLGTNDL 53 (157)
T ss_pred ceeecCCceeecCCCCCCCCCccHHHHHHHhhhcccc---CCCCEE----EEeccCccc
Confidence 378888887532 3455665566655543332 223222 377888776
No 222
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=59.17 E-value=55 Score=26.46 Aligned_cols=49 Identities=20% Similarity=0.086 Sum_probs=29.8
Q ss_pred cchhhcCCCEEEEccccccccc--------CC-CHHHHHHHHHHHHHCCCeEEEEeCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALL--------NE-SNDFVGDKVAYALSRGLKVIACVGET 51 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~--------~E-~~~~i~~Kv~~al~~gl~pIlCvGE~ 51 (173)
+++++.|++.|=+-=.= ..++ .+ .-+.+.+-+..|.++||.+|+++=..
T Consensus 28 ~~~~~~G~n~VRi~v~~-~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 28 DQLKALGFNTVRIPVGW-EAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHTTESEEEEEEES-TSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHCCCCEEEeCCCH-HHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 35788888877332220 1111 11 12446677899999999999998764
No 223
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=58.73 E-value=21 Score=29.50 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCeEEEEcccccccCCCCC-CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 79 DNVVLAYEPVWAIGTGKVA-TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a-~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.-.+|++=|+|. +.++. .|..+ ..++.+. + ..++|++-=|+++++|+.++.. .+.||+-+-++-+
T Consensus 131 gaDYv~~Gpv~t--~tK~~~~p~gl----~~l~~~~-~------~~~iPvvAIGGI~~~n~~~~~~-~GA~giAvisai~ 196 (221)
T PRK06512 131 RPDYLFFGKLGA--DNKPEAHPRNL----SLAEWWA-E------MIEIPCIVQAGSDLASAVEVAE-TGAEFVALERAVF 196 (221)
T ss_pred CCCEEEECCCCC--CCCCCCCCCCh----HHHHHHH-H------hCCCCEEEEeCCCHHHHHHHHH-hCCCEEEEhHHhh
Confidence 457899999984 33432 22222 2233332 2 1359999999999999998886 7999999999877
Q ss_pred C
Q 039862 158 K 158 (173)
Q Consensus 158 ~ 158 (173)
+
T Consensus 197 ~ 197 (221)
T PRK06512 197 D 197 (221)
T ss_pred C
Confidence 5
No 224
>PLN02411 12-oxophytodienoate reductase
Probab=58.08 E-value=15 Score=33.09 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=35.0
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccC-ChHHHHH
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 164 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl-~~~f~~I 164 (173)
++||+-.|+++++.+.+++..-.+|-|-+|++.+ +|+|..=
T Consensus 313 ~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k 354 (391)
T PLN02411 313 QGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLR 354 (391)
T ss_pred CCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHH
Confidence 3789999999999999999888899999999988 5876543
No 225
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.63 E-value=26 Score=28.91 Aligned_cols=45 Identities=29% Similarity=0.337 Sum_probs=35.4
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh----HHHHHHHHH
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP----EFIDIIKSA 168 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~----~f~~Ii~~~ 168 (173)
.++|++==|+|+.+|+.+++. .++|++-+|++-.+. +|.+|-+.+
T Consensus 154 p~ip~~atGGI~~~N~~~~l~-aGa~~vavgs~l~~~~~~~~~~~i~~~a 202 (213)
T PRK06552 154 PQVNVMVTGGVNLDNVKDWFA-AGADAVGIGGELNKLASQGDFDLITEKA 202 (213)
T ss_pred CCCEEEEECCCCHHHHHHHHH-CCCcEEEEchHHhCccccCCHHHHHHHH
Confidence 358999999999999999998 889999999876542 255555443
No 226
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.35 E-value=12 Score=33.19 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=26.8
Q ss_pred CcceEEE-cCCCCcccHHH---HhcCCCC--CEEEeecccCC
Q 039862 123 ASTRIIY-GGSVNGANCKE---LAAQPDV--DGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilY-GGSV~~~n~~~---~~~~~~v--DG~LiG~asl~ 158 (173)
..+|++| ||+++.+...+ .+...|. .|+++||+.+.
T Consensus 240 ~~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq 281 (340)
T PRK12858 240 TDLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQ 281 (340)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHh
Confidence 3588888 99997765433 3445777 99999999886
No 227
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.34 E-value=37 Score=26.33 Aligned_cols=60 Identities=23% Similarity=0.410 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-------cHHH-HhcCCCCCEEEe----ecccCChH-HHH
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-------NCKE-LAAQPDVDGFLV----GGASLKPE-FID 163 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-------n~~~-~~~~~~vDG~Li----G~asl~~~-f~~ 163 (173)
=|++..+-++..||+.. .++||.|.|+...+ -+.+ +.+...-|++|+ |+|-|+.+ -.+
T Consensus 10 HS~~lAeGv~~li~em~---------~dv~i~~~gGtddg~iGTs~~~I~~aI~~~~~ad~~lif~DlGSA~mn~e~a~E 80 (129)
T COG3412 10 HSKELAEGVAELIREMA---------GDVPITYAGGTDDGQIGTSFEKIMEAIEKANEADHVLVFYDLGSAKLNAEMALE 80 (129)
T ss_pred CCHHHHHHHHHHHHHHh---------CCCceEEecCCCCCCcCcCHHHHHHHHHhccccCceEEEEecchhhhhHHHHHH
Confidence 46888888999998874 36999998876533 2223 333677899997 99999854 444
Q ss_pred HH
Q 039862 164 II 165 (173)
Q Consensus 164 Ii 165 (173)
++
T Consensus 81 l~ 82 (129)
T COG3412 81 LL 82 (129)
T ss_pred Hh
Confidence 43
No 228
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=56.87 E-value=27 Score=28.88 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=34.1
Q ss_pred cceEEEcCCCCc-ccHHHHhcCCCCCEEEeecccCChH-HHHHHHHH
Q 039862 124 STRIIYGGSVNG-ANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilYGGSV~~-~n~~~~~~~~~vDG~LiG~asl~~~-f~~Ii~~~ 168 (173)
.+|+.+||+|+. +.++.++. .++|=+.||...++.+ +.++++.+
T Consensus 78 ~~~v~vgGGir~~edv~~~l~-~Ga~~viigt~~~~~~~~~~~~~~~ 123 (233)
T cd04723 78 PLGLWVDGGIRSLENAQEWLK-RGASRVIVGTETLPSDDDEDRLAAL 123 (233)
T ss_pred CCCEEEecCcCCHHHHHHHHH-cCCCeEEEcceeccchHHHHHHHhc
Confidence 389999999999 55677776 7899999999887535 56666554
No 229
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=56.83 E-value=23 Score=31.60 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=29.1
Q ss_pred cCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 122 AASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 122 ~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.+.++|..-|+|..+|..--+-..+--|+|||+=.+
T Consensus 276 ~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 276 EGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV 311 (363)
T ss_pred cCceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence 456999999999999965555568999999999544
No 230
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=56.35 E-value=25 Score=30.14 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=32.9
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC--hH-HHHHHHH
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK--PE-FIDIIKS 167 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~--~~-f~~Ii~~ 167 (173)
++||+--|+|. .+.+.+++. .+.|+|.||++.+. +. |.+|++.
T Consensus 252 ~ipIig~GGI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHhhh
Confidence 58898855555 455777775 99999999999886 55 7777653
No 231
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=56.10 E-value=12 Score=32.02 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=30.4
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 91 IGTGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 91 IGtG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
||||+= .+|.-+ +.|++. .++||+-.+++..---...+-+.|.||||+-.|--
T Consensus 155 IGSg~Gi~n~~~l----~~i~~~----------~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 155 IGSGRGIQNPYNL----RIIIER----------ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp TTT---SSTHHHH----HHHHHH----------GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred cccCcCCCCHHHH----HHHHHh----------cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 899986 445443 334433 15899888888765555555569999999988644
No 232
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=56.08 E-value=1.2e+02 Score=26.26 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=69.4
Q ss_pred cchhhcCCCEEEE-----cccccccc-cCC--CHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHH
Q 039862 2 EMLVNLSIPWVIL-----GHSERRAL-LNE--SNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTK 69 (173)
Q Consensus 2 ~mLkd~G~~~vii-----GHSERR~~-~~E--~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~ 69 (173)
+.||++|++.+-- .+.|-|+. +.. +-+..-+-++.|.+.|+.. |+=.||+.+++.. . ...+.
T Consensus 147 ~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~--~----l~~l~ 220 (340)
T TIGR03699 147 ERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIE--H----LERIR 220 (340)
T ss_pred HHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHH--H----HHHHH
Confidence 5689999987643 23354443 332 5666667788999999863 3334688776531 1 12222
Q ss_pred HHHhccCCCCC-eEEEEcccccccCC----CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhc
Q 039862 70 AIAEKISNWDN-VVLAYEPVWAIGTG----KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAA 143 (173)
Q Consensus 70 ~~l~~v~~~~~-iiIAYEPvwAIGtG----~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~ 143 (173)
.+-........ +-+-|-|. ||- .++++++.-++++..|-.+- +++-+-||-++.. ...+++-
T Consensus 221 ~l~~~~~~~~~fIP~~f~p~---~tpl~~~~~~~~~e~l~~iA~~Rl~lp---------~~~~i~~~~~~~g~~~~~~~l 288 (340)
T TIGR03699 221 ELQDKTGGFTAFIPWTFQPG---NTELGKKRPATSTEYLKVLAISRIFLD---------NIPNIQASWVTQGKEVGQLAL 288 (340)
T ss_pred HhchhhCCeeEEEeecccCC---CCcccCCCCCCHHHHHHHHHHHHHcCC---------CCCcccCCccccChHHHHHHH
Confidence 21100000111 11223342 442 24788988888888877641 2434556654443 2223322
Q ss_pred ---CCCCCEEEe
Q 039862 144 ---QPDVDGFLV 152 (173)
Q Consensus 144 ---~~~vDG~Li 152 (173)
..+++|.++
T Consensus 289 ~~Gan~~~g~~~ 300 (340)
T TIGR03699 289 HFGANDFGSTML 300 (340)
T ss_pred hcCCccCCCccc
Confidence 455666666
No 233
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=56.00 E-value=22 Score=31.08 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC-ChHHHH
Q 039862 104 EVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL-KPEFID 163 (173)
Q Consensus 104 ~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl-~~~f~~ 163 (173)
.....+|+.. ++||+-.|+++... +.+++....+|.+-+|++.+ +|+|..
T Consensus 281 ~~a~~ik~~~----------~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~ 332 (341)
T PF00724_consen 281 DLAEAIKKAV----------KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPN 332 (341)
T ss_dssp HHHHHHHHHH----------SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHH
T ss_pred hhhhhhhhhc----------CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHH
Confidence 3446666653 48899888888877 89999999999999999988 577654
No 234
>PRK08999 hypothetical protein; Provisional
Probab=55.93 E-value=48 Score=28.13 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=43.6
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
...+|..=|+|.-.|-....|-- .+.++++.. ..++||+--|+++++|+.++.. .++||+-+=++
T Consensus 246 ~~dyi~~gpvf~t~tk~~~~~~g----~~~~~~~~~-------~~~~Pv~AiGGI~~~~~~~~~~-~g~~gva~i~~ 310 (312)
T PRK08999 246 GVDFAVLSPVQPTASHPGAAPLG----WEGFAALIA-------GVPLPVYALGGLGPGDLEEARE-HGAQGIAGIRG 310 (312)
T ss_pred CCCEEEECCCcCCCCCCCCCCCC----HHHHHHHHH-------hCCCCEEEECCCCHHHHHHHHH-hCCCEEEEEEE
Confidence 45789999999887632211111 223333322 1258999999999999998777 58999987554
No 235
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=55.87 E-value=32 Score=31.21 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhc-CCCCCEEEeecc
Q 039862 93 TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAA-QPDVDGFLVGGA 155 (173)
Q Consensus 93 tG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~-~~~vDG~LiG~a 155 (173)
|..+++...+.++.+.+|+. ..+++|+.||.--.-+.++++. .+.+|-+..|-+
T Consensus 75 s~~t~~~~~~~~ia~~iK~~---------~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEg 129 (472)
T TIGR03471 75 HTSTPSFPSDVKTAEALKEQ---------NPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREF 129 (472)
T ss_pred ECCCcchHHHHHHHHHHHHh---------CCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCch
Confidence 45566777777777777765 3468898888665566677776 478999999864
No 236
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=55.20 E-value=72 Score=26.42 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHH
Q 039862 28 DFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHA 107 (173)
Q Consensus 28 ~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~ 107 (173)
+.+.+-++.|.+.|...+++..-...........+.+.+.+..+.+.. ....+.+++||.+-..+-...+++++.++++
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~ 163 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKA-ETKGVVIALETMAGQGNEIGSSFEELKEIID 163 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 345566788888898877663332211111123344445555544422 2456899999987554434566777777666
Q ss_pred HHH
Q 039862 108 ELR 110 (173)
Q Consensus 108 ~Ir 110 (173)
.+.
T Consensus 164 ~v~ 166 (279)
T cd00019 164 LIK 166 (279)
T ss_pred hcC
Confidence 653
No 237
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=55.14 E-value=1.8e+02 Score=26.97 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHH
Q 039862 29 FVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAE 108 (173)
Q Consensus 29 ~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~ 108 (173)
.+..=+..|.+.||.|++.|-...| ++.++. ...-+|.. .-|=.-|-. .+++...+....
T Consensus 147 ~l~~l~~~a~~lGl~~lvEvh~~~E--------------l~~al~----~~a~iiGi-NnRdL~t~~-vd~~~~~~l~~~ 206 (454)
T PRK09427 147 QYRQLAAVAHSLNMGVLTEVSNEEE--------------LERAIA----LGAKVIGI-NNRNLRDLS-IDLNRTRELAPL 206 (454)
T ss_pred HHHHHHHHHHHcCCcEEEEECCHHH--------------HHHHHh----CCCCEEEE-eCCCCccce-ECHHHHHHHHhh
Confidence 4555589999999999999987543 333443 12223332 111111111 344443433333
Q ss_pred HHHHHHhccchhhcCcceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC
Q 039862 109 LRKWLKDNVSAEVAASTRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 109 Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
|. .++.++--++++ ++.+..+ .. ++||+|||.+-++
T Consensus 207 ip------------~~~~~vseSGI~t~~d~~~~-~~-~~davLiG~~lm~ 243 (454)
T PRK09427 207 IP------------ADVIVISESGIYTHAQVREL-SP-FANGFLIGSSLMA 243 (454)
T ss_pred CC------------CCcEEEEeCCCCCHHHHHHH-Hh-cCCEEEECHHHcC
Confidence 21 234455544554 5555555 43 6999999998886
No 238
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=55.07 E-value=4.7 Score=28.14 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHH----------HHHHhccchhhcCcceEEEcC
Q 039862 97 ATPAQAQEVHAELR----------KWLKDNVSAEVAASTRIIYGG 131 (173)
Q Consensus 97 a~~e~i~~~~~~Ir----------~~~~~~~~~~~~~~i~ilYGG 131 (173)
++|++.+++|..+. .-+.+++|+.++.++-||||-
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGl 56 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGL 56 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHH
Confidence 56766666665544 345667788889999999984
No 239
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=54.98 E-value=1e+02 Score=24.29 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=52.3
Q ss_pred cchhhcCCCEEEEcccccc-cccC-----------CCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHH------H
Q 039862 2 EMLVNLSIPWVILGHSERR-ALLN-----------ESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVA------V 63 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR-~~~~-----------E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~------~ 63 (173)
.+|+++|+++||+-=+=-+ ..+. -..+.+..-+..|-+.||...+=++-...--++++... .
T Consensus 27 ~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~ 106 (166)
T PF14488_consen 27 RAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ 106 (166)
T ss_pred HHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH
Confidence 4789999999998632211 1122 23458999999999999999998886533222222221 1
Q ss_pred HHHHHHHHHhccCCCCCeEEEEccc
Q 039862 64 VAEQTKAIAEKISNWDNVVLAYEPV 88 (173)
Q Consensus 64 l~~Ql~~~l~~v~~~~~iiIAYEPv 88 (173)
+..+|......-..+.--+|-||+-
T Consensus 107 v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 107 VADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred HHHHHHHHHcCCCCCceEEEecccC
Confidence 2222222222222366689999985
No 240
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.83 E-value=15 Score=32.81 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=33.0
Q ss_pred cceEEEcCCC-------------------CcccHHHHhcCCCCCEEEeecccC-ChHH
Q 039862 124 STRIIYGGSV-------------------NGANCKELAAQPDVDGFLVGGASL-KPEF 161 (173)
Q Consensus 124 ~i~ilYGGSV-------------------~~~n~~~~~~~~~vDG~LiG~asl-~~~f 161 (173)
++||+--|++ +++.+.+++..-.+|.+.+|++.+ +|+|
T Consensus 280 ~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~ 337 (361)
T cd04747 280 GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAW 337 (361)
T ss_pred CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHH
Confidence 4889998887 778899999999999999999988 4884
No 241
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=54.74 E-value=16 Score=35.48 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=32.5
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccC-ChHH
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASL-KPEF 161 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl-~~~f 161 (173)
++||+.-|++ +++.+.+++..-++|++.+|+..+ +|+|
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW 726 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence 4889998888 567799999999999999999988 4774
No 242
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=54.61 E-value=11 Score=27.11 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=45.8
Q ss_pred EEEEeCCCHHHHhcCChHHHHHHHHHHHHhccC--CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhh
Q 039862 44 VIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV 121 (173)
Q Consensus 44 pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~--~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~ 121 (173)
.++++|+..-+ .+..+.+.+-|+.-|-..+ ..+.++|-.- +|...+..+++++.+.|++.+
T Consensus 3 A~iGiG~a~G~---~r~~~Av~~Al~spLl~~~i~~A~~vLvni~------~~~d~~l~ev~~~~~~i~~~~-------- 65 (95)
T PF12327_consen 3 AMIGIGEASGE---NRAEEAVEQALNSPLLDVDIKGAKGVLVNIT------GGPDLSLSEVNEAMEIIREKA-------- 65 (95)
T ss_dssp EEEEEEEEEST---THHHHHHHHHHTSTTSTS-GGG-SEEEEEEE------E-TTS-HHHHHHHHHHHHHHS--------
T ss_pred EEEEEEEECCc---cHHHHHHHHHHhCccccCChHHhceEEEEEE------cCCCCCHHHHHHHHHHHHHHh--------
Confidence 35677765321 2345555555543222222 2566776543 356688999999999999875
Q ss_pred cCcceEEEcCCCCcc
Q 039862 122 AASTRIIYGGSVNGA 136 (173)
Q Consensus 122 ~~~i~ilYGGSV~~~ 136 (173)
.++..|++|-+++++
T Consensus 66 ~~~a~ii~G~~id~~ 80 (95)
T PF12327_consen 66 DPDANIIWGASIDEE 80 (95)
T ss_dssp STTSEEEEEEEE-TT
T ss_pred hcCceEEEEEEECCC
Confidence 357889999998764
No 243
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=53.55 E-value=41 Score=29.28 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=34.6
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC--hH-HHHHHHHHhh
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK--PE-FIDIIKSATV 170 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~--~~-f~~Ii~~~~~ 170 (173)
++||+--|+| +.+.+.+++. .+.|+|-||++.+. ++ +.+|++.+..
T Consensus 239 ~ipIig~GGI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~~~L~~ 288 (334)
T PRK07565 239 GADLAATTGVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGTILRGLED 288 (334)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHHHHHHHHH
Confidence 5899975555 5566788886 99999999999886 55 6677766543
No 244
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.48 E-value=1.1e+02 Score=27.88 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=23.9
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeeccc
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~as 156 (173)
++||+--|+| +++.+..-+. .+.|+|.+|++-
T Consensus 256 ~vpVIAdGGI~~~~Di~KALa-lGA~aVmvGs~~ 288 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIA-AGADSVMIGNLF 288 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHH-cCCCEEEEccee
Confidence 4899996666 5555555555 899999999964
No 245
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.45 E-value=42 Score=27.77 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=50.3
Q ss_pred chhhcCCCEEEE---cccccccccCC--------CHHHHHHHHHHHHHCCCeEEEEeCCCHH-HHhcCChHHHHHHHHHH
Q 039862 3 MLVNLSIPWVIL---GHSERRALLNE--------SNDFVGDKVAYALSRGLKVIACVGETLE-QRESGSTVAVVAEQTKA 70 (173)
Q Consensus 3 mLkd~G~~~vii---GHSERR~~~~E--------~~~~i~~Kv~~al~~gl~pIlCvGE~~~-~r~~~~~~~~l~~Ql~~ 70 (173)
++++.|++.+-+ +|.-. .++- .-+.+.+-++.|.+.|...|.|.|-... ........+...+.++.
T Consensus 65 ~l~~~gl~i~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 142 (283)
T PRK13209 65 ALVETGFRVNSMCLSAHRRF--PLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKE 142 (283)
T ss_pred HHHHcCCceeEEeccccccc--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHH
Confidence 567888887544 33311 1221 1234566789999999998776553210 00001222333344444
Q ss_pred HHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHH
Q 039862 71 IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAE 108 (173)
Q Consensus 71 ~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~ 108 (173)
+.+.. ....+.|+|||.. +....+++++.++++.
T Consensus 143 l~~~A-~~~GV~i~iE~~~---~~~~~~~~~~~~ll~~ 176 (283)
T PRK13209 143 SVELA-SRASVTLAFEIMD---TPFMNSISKALGYAHY 176 (283)
T ss_pred HHHHH-HHhCCEEEEeecC---CcccCCHHHHHHHHHH
Confidence 33321 1235899999963 2223455554444433
No 246
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=53.16 E-value=21 Score=31.06 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+||+++++++.+ .. ...+.+---|+|+++|+.+++. .+||-+-+|.--++
T Consensus 217 m~~e~~~~av~~l-~~---------~~~~~lEaSGgIt~~ni~~yA~-tGVD~IS~galths 267 (280)
T COG0157 217 MSPEELKEAVKLL-GL---------AGRALLEASGGITLENIREYAE-TGVDVISVGALTHS 267 (280)
T ss_pred CCHHHHHHHHHHh-cc---------CCceEEEEeCCCCHHHHHHHhh-cCCCEEEeCccccC
Confidence 6789998888875 11 3457777899999999999987 89999998875554
No 247
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=53.12 E-value=33 Score=30.68 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcC-CCCCEEEeecccCCh
Q 039862 98 TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQ-PDVDGFLVGGASLKP 159 (173)
Q Consensus 98 ~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~-~~vDG~LiG~asl~~ 159 (173)
+++.+.++.+.+++ .. ..+++|+-=|+++++|++++... ..||++=||..-.+.
T Consensus 262 ~~~l~~~vr~~Ld~----~g----~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 262 NPELIKALRKALDE----NG----GKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred cHHHHHHHHHHHhh----CC----CCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 46666665544433 21 26799999999999999999874 349999999976653
No 248
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=52.96 E-value=1.1e+02 Score=23.81 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=60.8
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC-
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTKAIAEKISN- 77 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~- 77 (173)
.|++.|+++|++-=+|--.+ .|.....-+..|.++||.. ..|- ++. -..|.+..++.+..
T Consensus 16 ~~~~~g~~fviik~t~G~~~---~D~~~~~~~~~a~~aGl~~G~Yhy~~~-~~~-----------a~~qa~~fi~~~~~~ 80 (186)
T cd00599 16 AVKAAGIDFVFIKATEGTTY---VDPKFATNRARARAAGLLVGAYHFARP-CAN-----------AEAQADNFVNTVPRD 80 (186)
T ss_pred HHHhCCCcEEEEEEeCCCCc---cChHHHHHHHHHHHCCCceEEEEEecC-CCC-----------HHHHHHHHHHHccCc
Confidence 47788999999988887543 4566777889999999753 1222 111 23455555555543
Q ss_pred --CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCC
Q 039862 78 --WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS 132 (173)
Q Consensus 78 --~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS 132 (173)
..++++-+|....-+ ++....+.+....+.+++. +...++||.+.
T Consensus 81 ~~~~~~~lDvE~~~~~~-----~~~~~~~~~~~f~~~~~~~-----gg~~~~iY~~~ 127 (186)
T cd00599 81 PGSLPLVLDVEDTGGGC-----SAAALAAWLNAFLNEVEAL-----TGKKPIIYTSP 127 (186)
T ss_pred CCCCCeEEEEecCCCCC-----CHHHHHHHHHHHHHHHHHH-----HCCceEEEEcH
Confidence 456788888743211 3333332333333333332 22467899764
No 249
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=52.91 E-value=24 Score=32.78 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhccchhh---c-----CcceEEEcCCCCcccHHHHhc-----CCCCC--EEEeecccCC
Q 039862 103 QEVHAELRKWLKDNVSAEV---A-----ASTRIIYGGSVNGANCKELAA-----QPDVD--GFLVGGASLK 158 (173)
Q Consensus 103 ~~~~~~Ir~~~~~~~~~~~---~-----~~i~ilYGGSV~~~n~~~~~~-----~~~vD--G~LiG~asl~ 158 (173)
.++....|+.|-+.||.+. + ..++|+||++++.+.+.+++. --.+| ++=||++-+.
T Consensus 300 ~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~il~~l~~~G~~~dni~FGvGt~l~~ 370 (463)
T PRK09198 300 VTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAILEALKAKGFAAENIVFGMGGALLQ 370 (463)
T ss_pred HHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHHHHHHHhCCCccccceEecCccccc
Confidence 4445556676777665432 2 389999999999999988542 23466 8888887654
No 250
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=52.74 E-value=25 Score=32.75 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=28.7
Q ss_pred CcceEEEcCCCCcccHHHHhc----C---CCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVNGANCKELAA----Q---PDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~----~---~~vDG~LiG~asl~ 158 (173)
..++|+||++++.+-+.+|+. + .+.|++=||+.-+.
T Consensus 333 ~~v~Ii~gd~ide~~i~~il~~L~~~G~~a~n~~fGvGt~l~q 375 (470)
T PHA02594 333 EHVRLIQGDGITLERINRILTRMKENGFASENVAFGMGGGLLQ 375 (470)
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHCCCCCCcceEecCcccee
Confidence 589999999999999999773 2 35669989887553
No 251
>PRK06934 flavodoxin; Provisional
Probab=52.64 E-value=15 Score=30.70 Aligned_cols=118 Identities=16% Similarity=0.220 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcC------ChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCH
Q 039862 26 SNDFVGDKVAYALSRGLKVIACVGETLEQRESG------STVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATP 99 (173)
Q Consensus 26 ~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~------~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~ 99 (173)
+.+.|++.+...+...|--|-.........+.- +...-...+|......++.+..++|.| |+|. |..|.
T Consensus 72 nTk~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~-PIWw---g~~P~- 146 (221)
T PRK06934 72 STQYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGY-PIWW---YKMPM- 146 (221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEc-chhh---ccccH-
Confidence 556799999999999998887765332111000 000011123333344455688999999 9996 44432
Q ss_pred HHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCC---cccHHHHhcCC-CC-CEEEeecccC
Q 039862 100 AQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVN---GANCKELAAQP-DV-DGFLVGGASL 157 (173)
Q Consensus 100 e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~---~~n~~~~~~~~-~v-DG~LiG~asl 157 (173)
-+..+|.+. +..|.. =+|+-- |||=. .+..++++... .+ +|+.+-+...
T Consensus 147 ----~V~tFLe~~--d~~GK~---I~pF~T~ggsg~g~s~~~i~~l~~~a~~v~~Gl~i~~~~~ 201 (221)
T PRK06934 147 ----VMYSFFEQH--DFSGKT---LIPFTTHGGSRFSDSLREIKRLQPNAQLVTQGLAISRNDV 201 (221)
T ss_pred ----HHHHHHHhc--CCCCCE---EEEEEecCCCCccchHHHHHHHcCCcceeccceeeecCcc
Confidence 234445443 111211 133332 44322 23345555555 23 8888865433
No 252
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=52.52 E-value=34 Score=28.37 Aligned_cols=104 Identities=21% Similarity=0.161 Sum_probs=59.9
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEE-EEcccccccCCCCCCH
Q 039862 21 ALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVL-AYEPVWAIGTGKVATP 99 (173)
Q Consensus 21 ~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiI-AYEPvwAIGtG~~a~~ 99 (173)
++|++-+..--+.++..+...+...+.+.+..+. + ...........+++ +|-|----|||++.+-
T Consensus 80 QlHG~e~~~~~~~l~~~~~~~v~kai~v~~~~~~------------~--~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW 145 (208)
T COG0135 80 QLHGDEDPEYIDQLKEELGVPVIKAISVSEEGDL------------E--LAAREEGPVDAILLDAKVPGLPGGTGQTFDW 145 (208)
T ss_pred EECCCCCHHHHHHHHhhcCCceEEEEEeCCccch------------h--hhhhccCCccEEEEcCCCCCCCCCCCcEECH
Confidence 4555333333344555544567777777765320 0 01110011222222 4444456789999887
Q ss_pred HHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeec
Q 039862 100 AQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 100 e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~ 154 (173)
+.+... + ...|++..|++||+|+.+.+....-.|+=|-+
T Consensus 146 ~~l~~~----~------------~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSS 184 (208)
T COG0135 146 NLLPKL----R------------LSKPVMLAGGLNPDNVAEAIALGPPYGVDVSS 184 (208)
T ss_pred HHhccc----c------------ccCCEEEECCCCHHHHHHHHHhcCCceEEecc
Confidence 765542 1 13669999999999999999876656665543
No 253
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=51.87 E-value=1.5e+02 Score=25.40 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHH
Q 039862 28 DFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHA 107 (173)
Q Consensus 28 ~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~ 107 (173)
+.+..=+..|.+.||.|++=|=...| ++.+++ ....+|.+==.=. +.-..+.+.-.+...
T Consensus 143 ~~l~el~~~A~~LGm~~LVEVh~~eE--------------l~rAl~----~ga~iIGINnRdL--~tf~vdl~~t~~la~ 202 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEVHNEEE--------------LERALK----LGAKIIGINNRDL--TTLEVDLETTEKLAP 202 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCHHH--------------HHHHHh----CCCCEEEEeCCCc--chheecHHHHHHHHh
Confidence 34455578999999999998876433 334443 1223333211100 011233444333222
Q ss_pred HHHHHHHhccchhhcCcceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC
Q 039862 108 ELRKWLKDNVSAEVAASTRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 108 ~Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.++ .+.-++--.+++ ++++ ..+...++||+|||.+=++
T Consensus 203 ~~p------------~~~~~IsESGI~~~~dv-~~l~~~ga~a~LVG~slM~ 241 (254)
T COG0134 203 LIP------------KDVILISESGISTPEDV-RRLAKAGADAFLVGEALMR 241 (254)
T ss_pred hCC------------CCcEEEecCCCCCHHHH-HHHHHcCCCEEEecHHHhc
Confidence 222 123344455555 6664 4555589999999998776
No 254
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=51.75 E-value=29 Score=29.15 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=69.2
Q ss_pred cccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCC
Q 039862 15 GHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTG 94 (173)
Q Consensus 15 GHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG 94 (173)
-+++|+....|-...|++++...++.|.+.+++.|.|... +...|. ...+ +|.|=.+
T Consensus 66 ~~~~r~~~~~~eK~~IA~~Aa~lI~~g~~ifld~GTT~~~-------------la~~L~---~~~~-------ltviTNs 122 (253)
T COG1349 66 PFSERKALNTEEKRAIAKAAATLIEDGDTIFLDAGTTTLA-------------LARALP---DDNN-------LTVITNS 122 (253)
T ss_pred cHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEECCCcHHHH-------------HHHHhC---cCCC-------eEEEeCC
Confidence 3557777777778889999999999999999999998542 222332 1222 2333112
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-------HHHHhcCCCCCEEEeecccCCh
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-------CKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-------~~~~~~~~~vDG~LiG~asl~~ 159 (173)
...+.. +.... ...+ ++-||.+++.+ +.+.+++-.+|=.++|..+++.
T Consensus 123 ----l~ia~~--------l~~~~----~~~v-i~~GG~~~~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~ 177 (253)
T COG1349 123 ----LNIAAA--------LLEKP----NIEV-ILLGGTVRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDL 177 (253)
T ss_pred ----HHHHHH--------HHhCC----CCeE-EEeCcEEEcCCCeEEcHHHHHHHHhCcccEEEEeccccCC
Confidence 222221 11111 2223 68899888665 6788999999999999988873
No 255
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=51.47 E-value=13 Score=30.49 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=23.5
Q ss_pred ceEEEcCCCCcccHHHHhcCCCCCEEEe
Q 039862 125 TRIIYGGSVNGANCKELAAQPDVDGFLV 152 (173)
Q Consensus 125 i~ilYGGSV~~~n~~~~~~~~~vDG~Li 152 (173)
.|++..|+++|+|+.+++...+-+|+=|
T Consensus 155 ~p~~LAGGi~peNv~~ai~~~~p~gvDv 182 (210)
T PRK01222 155 KPWILAGGLNPDNVAEAIRQVRPYGVDV 182 (210)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCEEEe
Confidence 5899999999999999998756666655
No 256
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=51.13 E-value=22 Score=27.14 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=58.8
Q ss_pred EEEcccccccccCCCHHHHHHHHHHHHH-CCCeEEEEeCCCHHHHhcCC-hHHHHHHHHHHHHhccCCCCCeEEEEcccc
Q 039862 12 VILGHSERRALLNESNDFVGDKVAYALS-RGLKVIACVGETLEQRESGS-TVAVVAEQTKAIAEKISNWDNVVLAYEPVW 89 (173)
Q Consensus 12 viiGHSERR~~~~E~~~~i~~Kv~~al~-~gl~pIlCvGE~~~~r~~~~-~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvw 89 (173)
|+|+|| | |..++.+++..++ .|+.|++=--.. ..|. +.+.|.+++.. . .=-|+-|-|-=
T Consensus 2 VFIvhg-~-------~~~~~~~v~~~L~~~~~ep~i~~~~~----~~g~tiie~le~~~~~----~---~faIvl~TpDD 62 (125)
T PF10137_consen 2 VFIVHG-R-------DLAAAEAVERFLEKLGLEPIIWHEQP----NLGQTIIEKLEEAADS----V---DFAIVLFTPDD 62 (125)
T ss_pred EEEEeC-C-------CHHHHHHHHHHHHhCCCceEEeecCC----CCCCchHHHHHHHhcc----C---CEEEEEEcccc
Confidence 789999 3 2457778888888 799998765444 2333 33444444332 2 22355566622
Q ss_pred ---cccCC----CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeec
Q 039862 90 ---AIGTG----KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGG 154 (173)
Q Consensus 90 ---AIGtG----~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~ 154 (173)
.-+.- ..|.+..+-|+=-++-. +| .+++-+|.=|.|..- .|++|+....
T Consensus 63 ~~~~~~~~~~~~~~aR~NVifE~G~f~g~-----LG---r~rv~~l~~~~v~~P--------SDl~Gi~~~~ 118 (125)
T PF10137_consen 63 IGYSRGEEEDLQPRARQNVIFELGLFIGK-----LG---RERVFILVKGGVELP--------SDLSGITYIR 118 (125)
T ss_pred cccccCCccccccccccceeehhhHHHhh-----cC---cceEEEEEcCCccCC--------cccCCeEEEE
Confidence 11111 12444555453333322 22 245778886666655 3677776644
No 257
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.09 E-value=32 Score=30.65 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=40.0
Q ss_pred ccccCCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCCcccHH---HHhcCCCCC--EEEeecccCCh
Q 039862 89 WAIGTGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVNGANCK---ELAAQPDVD--GFLVGGASLKP 159 (173)
Q Consensus 89 wAIGtG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~~~n~~---~~~~~~~vD--G~LiG~asl~~ 159 (173)
|-.|.|.+ ++-+++.. ..++.- .+.++|.+| +++|+.+-.. +++...+.. |||.|||-|..
T Consensus 216 eG~~~g~~~yt~~eA~~---~f~~~~-------~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGvL~GRAtW~~ 283 (329)
T PRK04161 216 EGFTEGEVVYSQEEAIK---AFKDQE-------AATHLPYIYLSAGVSAKLFQETLVFAAEAGAQFNGVLCGRATWAG 283 (329)
T ss_pred cccCcccccccHHHHHH---HHHHHh-------cccCCCEEEEcCCCCHHHHHHHHHHHHhcCCCcccEEeehhhhhh
Confidence 44677654 55666544 333321 134677666 9999988754 455567766 99999999974
No 258
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=50.52 E-value=1.8e+02 Score=25.78 Aligned_cols=117 Identities=13% Similarity=0.127 Sum_probs=63.0
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHH--HHhcC--ChHHHHHHHHHHHHhccCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLE--QRESG--STVAVVAEQTKAIAEKISN 77 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~--~r~~~--~~~~~l~~Ql~~~l~~v~~ 77 (173)
..||++|++.+=|=|-.--+.| | . =++..-++||-.|+.++++.. .|... .+...+.++....++....
T Consensus 60 ~~l~~LgiNtIRVY~vdp~~nH---d-~---CM~~~~~aGIYvi~Dl~~p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~ 132 (314)
T PF03198_consen 60 PLLKELGINTIRVYSVDPSKNH---D-E---CMSAFADAGIYVILDLNTPNGSINRSDPAPSWNTDLLDRYFAVIDAFAK 132 (314)
T ss_dssp HHHHHHT-SEEEES---TTS-----H-H---HHHHHHHTT-EEEEES-BTTBS--TTS------HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEEEEeCCCCCH---H-H---HHHHHHhCCCEEEEecCCCCccccCCCCcCCCCHHHHHHHHHHHHHhcc
Confidence 3588999998865333222211 1 1 156677899999999999854 33333 4555566666666665555
Q ss_pred CCCe---EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcC
Q 039862 78 WDNV---VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGG 131 (173)
Q Consensus 78 ~~~i---iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGG 131 (173)
+.++ .+.=|=++... .+..+..++.+++-+|+++++.- -..|||=|-.
T Consensus 133 Y~N~LgFf~GNEVin~~~--~t~aap~vKAavRD~K~Yi~~~~----~R~IPVGYsa 183 (314)
T PF03198_consen 133 YDNTLGFFAGNEVINDAS--NTNAAPYVKAAVRDMKAYIKSKG----YRSIPVGYSA 183 (314)
T ss_dssp -TTEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSS----S----EEEEE
T ss_pred CCceEEEEecceeecCCC--CcccHHHHHHHHHHHHHHHHhcC----CCCCceeEEc
Confidence 6663 33346554432 22357788999999999998742 3568888843
No 259
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=49.87 E-value=99 Score=28.66 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=51.1
Q ss_pred CCCeEEEEcccccccCCC-CCCH---HHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 78 WDNVVLAYEPVWAIGTGK-VATP---AQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~-~a~~---e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
....+|+.=|+|..-|-. +..| +.+.++.+.+... .+.. ...+|++-=|+|+++|+.+++. .|+||+-|=
T Consensus 319 ~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~---~~~~--~~~iPVVAIGGI~~~Ni~~vl~-aGa~GVAVV 392 (437)
T PRK12290 319 IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTI---PYQG--QTGFPTVAIGGIDQSNAEQVWQ-CGVSSLAVV 392 (437)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhc---cccc--cCCCCEEEECCcCHHHHHHHHH-cCCCEEEEe
Confidence 456899999999998765 2333 3333332222110 0110 2358999999999999999985 799999998
Q ss_pred cccCC
Q 039862 154 GASLK 158 (173)
Q Consensus 154 ~asl~ 158 (173)
++-+.
T Consensus 393 SAI~~ 397 (437)
T PRK12290 393 RAITL 397 (437)
T ss_pred hHhhc
Confidence 87664
No 260
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=49.66 E-value=63 Score=27.71 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=45.9
Q ss_pred EEEEcccccccCCC---C-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHh-cCCCCCEEEeecc
Q 039862 82 VLAYEPVWAIGTGK---V-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELA-AQPDVDGFLVGGA 155 (173)
Q Consensus 82 iIAYEPvwAIGtG~---~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~-~~~~vDG~LiG~a 155 (173)
||.----|-.|.-. + .|..+..+.++.+.+..+..+ -+-+++.-||-+..- .+.-++ ..+++||+ .|..
T Consensus 179 iiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~----kd~i~l~~GGPi~~p~da~yi~d~c~~~~gf-ygas 253 (276)
T COG5564 179 IIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVR----KDVIPLCHGGPISMPEDARYILDRCPGCDGF-YGAS 253 (276)
T ss_pred eeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhh----hceeeeccCCCcCCchhhHHHHhhCCCCCcc-cccc
Confidence 33344556655322 2 244444333333333333322 134778889987655 444444 48999996 5777
Q ss_pred cCC--hHHHHHHHHHhhhc
Q 039862 156 SLK--PEFIDIIKSATVKK 172 (173)
Q Consensus 156 sl~--~~f~~Ii~~~~~~~ 172 (173)
|++ |.=..|-++...+|
T Consensus 254 smerlp~e~ai~~~t~~fk 272 (276)
T COG5564 254 SMERLPAEAAIRRQTSAFK 272 (276)
T ss_pred hhhccchHHHHHHHHHHHh
Confidence 776 44444555544443
No 261
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=49.57 E-value=89 Score=25.62 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=42.3
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
..+..|-. .|...+|+++..+ |+... .+.++.--|+|+++++...... +.|-+.||++-..
T Consensus 136 ~~a~~~~~---~G~v~s~~~~~~i----r~~~~--------~~~~i~V~gGI~~~~~~~~~~~-~ad~~VvGr~I~~ 196 (216)
T PRK13306 136 HRSRDAQL---AGVAWGEKDLNKV----KKLSD--------MGFKVSVTGGLVVEDLKLFKGI-PVKTFIAGRAIRG 196 (216)
T ss_pred hhhhhhhh---cCCCCCHHHHHHH----HHHhc--------CCCeEEEcCCCCHhhHHHHhcC-CCCEEEECCcccC
Confidence 34555652 4777888887653 33321 2345888899999998886554 7999999998664
No 262
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=48.89 E-value=1.5e+02 Score=24.33 Aligned_cols=77 Identities=14% Similarity=0.297 Sum_probs=48.5
Q ss_pred CeEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcC-CCCcccHHHHhc
Q 039862 80 NVVLAYEPVWA---------------IGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGG-SVNGANCKELAA 143 (173)
Q Consensus 80 ~iiIAYEPvwA---------------IGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGG-SV~~~n~~~~~~ 143 (173)
+.+|+|.|.|. ++.|..++|.++.++.+.||+. ++++++.- ..+++-+..+++
T Consensus 151 ~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~-----------~v~~i~~e~~~~~~~~~~la~ 219 (256)
T PF01297_consen 151 RPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKEN-----------KVKCIFTEPQFSSKLAEALAK 219 (256)
T ss_dssp GEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHT-----------T-SEEEEETTS-THHHHHHHH
T ss_pred CeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhc-----------CCcEEEecCCCChHHHHHHHH
Confidence 67889999873 5788889999999999998863 47666654 445455677777
Q ss_pred CCCCCEEEeecc---cCC-hHHHHHHHH
Q 039862 144 QPDVDGFLVGGA---SLK-PEFIDIIKS 167 (173)
Q Consensus 144 ~~~vDG~LiG~a---sl~-~~f~~Ii~~ 167 (173)
..++.=+-+-.. .-. ..|.++.+.
T Consensus 220 ~~g~~vv~ld~l~~~~~~~~~y~~~~~~ 247 (256)
T PF01297_consen 220 ETGVKVVYLDPLGGGIPDGDSYLDMMEQ 247 (256)
T ss_dssp CCT-EEEESSTTCSTTSSTTSHHHHHHH
T ss_pred HcCCcEEEeCCCcCCCCCcCCHHHHHHH
Confidence 777654443222 222 336666554
No 263
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=48.87 E-value=43 Score=28.28 Aligned_cols=95 Identities=12% Similarity=0.174 Sum_probs=50.9
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEe-----CCCHHH------HhcCChHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACV-----GETLEQ------RESGSTVAVVAEQTKA 70 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCv-----GE~~~~------r~~~~~~~~l~~Ql~~ 70 (173)
.++|++|++.+=..|- -++... +..|-+.||.++--+ |..... .......+...+++..
T Consensus 43 ~l~k~~G~N~iR~~h~------p~~~~~----~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (298)
T PF02836_consen 43 ELMKEMGFNAIRTHHY------PPSPRF----YDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELRE 112 (298)
T ss_dssp HHHHHTT-SEEEETTS--------SHHH----HHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHH
T ss_pred HHHHhcCcceEEcccc------cCcHHH----HHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHH
Confidence 4689999999955442 244444 689999999887433 222110 0122345666777777
Q ss_pred HHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 71 IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 71 ~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
.+.... ..|-||. |.+|. .+...+.++++.+.+|+.
T Consensus 113 ~v~~~~-NHPSIi~----W~~gN-E~~~~~~~~~l~~~~k~~ 148 (298)
T PF02836_consen 113 MVRRDR-NHPSIIM----WSLGN-ESDYREFLKELYDLVKKL 148 (298)
T ss_dssp HHHHHT-T-TTEEE----EEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-CcCchhe----eecCc-cCccccchhHHHHHHHhc
Confidence 766433 3344443 78884 333344455555555543
No 264
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.91 E-value=56 Score=25.21 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCC-CCc-ccHH---HHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS-VNG-ANCK---ELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS-V~~-~n~~---~~~~~~~vDG~LiG~asl~ 158 (173)
.+.+.+.++++.+|+. | ...++++-||. +.+ +... +.+...++|.+|=++..++
T Consensus 64 ~~~~~~~~~~~~l~~~-----g---l~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~ 122 (134)
T TIGR01501 64 HGEIDCKGLRQKCDEA-----G---LEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPE 122 (134)
T ss_pred cCHHHHHHHHHHHHHC-----C---CCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHH
Confidence 4566777777777663 2 23567778886 333 4433 3477789999999988653
No 265
>PLN02417 dihydrodipicolinate synthase
Probab=46.97 E-value=1.8e+02 Score=24.63 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=25.5
Q ss_pred cchhhcCCCEEEE-cccccccccC-CCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 039862 2 EMLVNLSIPWVIL-GHSERRALLN-ESNDFVGDKVAYALSRGLKVIACVGET 51 (173)
Q Consensus 2 ~mLkd~G~~~vii-GHSERR~~~~-E~~~~i~~Kv~~al~~gl~pIlCvGE~ 51 (173)
+.|.+.|++.+++ |++=-=..+. |.-..+.+.+..+....+..|.++|.+
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 3567789999876 5532111111 111112233344444557778888864
No 266
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=46.58 E-value=35 Score=30.31 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=29.6
Q ss_pred cchhhcCCCEEEEcccccccccCC-------CHHHHHHHHHHHHHCCCeEEEEeCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNE-------SNDFVGDKVAYALSRGLKVIACVGET 51 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E-------~~~~i~~Kv~~al~~gl~pIlCvGE~ 51 (173)
++||+.|+++| |=+.+++ +-+.+.+..++|.++||...|+.-=+
T Consensus 31 ~ilk~~G~N~v------RlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYS 81 (332)
T PF07745_consen 31 QILKDHGVNAV------RLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYS 81 (332)
T ss_dssp HHHHHTT--EE------EEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SS
T ss_pred HHHHhcCCCeE------EEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeeccc
Confidence 46899999999 4333433 23467789999999999999999643
No 267
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=46.52 E-value=22 Score=31.08 Aligned_cols=30 Identities=33% Similarity=0.666 Sum_probs=23.2
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
+=||||.|--=. .-.+||++-++|.-+|..
T Consensus 263 iGaYePrWfmK~-~HInPeEav~Ihkdv~ar 292 (343)
T KOG3798|consen 263 IGAYEPRWFMKS-QHINPEEAVEIHKDVRAK 292 (343)
T ss_pred ccccCchhhccc-ccCCHHHHHHHHHHHhhh
Confidence 459999997633 337899999999988763
No 268
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=46.41 E-value=23 Score=30.63 Aligned_cols=44 Identities=30% Similarity=0.498 Sum_probs=29.9
Q ss_pred cceEEE---cCCCCcccHHHHhcCCCCCEEEeecccCC---hH-HH-HHHHHH
Q 039862 124 STRIIY---GGSVNGANCKELAAQPDVDGFLVGGASLK---PE-FI-DIIKSA 168 (173)
Q Consensus 124 ~i~ilY---GGSV~~~n~~~~~~~~~vDG~LiG~asl~---~~-f~-~Ii~~~ 168 (173)
..|++- ||--+|.. ..|+-+.+.||+|||+.-.+ |+ |. .|++..
T Consensus 206 rLPVvnFAAGGvATPAD-AALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~ 257 (296)
T COG0214 206 RLPVVNFAAGGVATPAD-AALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEAT 257 (296)
T ss_pred CCCeEeecccCcCChhH-HHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHH
Confidence 456553 66667666 66777899999999997665 54 54 444443
No 269
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=46.30 E-value=30 Score=29.34 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=35.8
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc-cHHHHhcCCCCCEEEeeccc
Q 039862 93 TGKVAT-PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA-NCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 93 tG~~a~-~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~-n~~~~~~~~~vDG~LiG~as 156 (173)
||...+ .+..++.++.+|++ ..+.|+-.|=+|+.. ..++..+- -||+.||++-
T Consensus 184 TG~~~svn~~l~~L~qrvrk~---------t~dtPlAVGFGvst~EHf~qVgsv--aDGVvvGSki 238 (268)
T KOG4175|consen 184 TGTRESVNEKLQSLLQRVRKA---------TGDTPLAVGFGVSTPEHFKQVGSV--ADGVVVGSKI 238 (268)
T ss_pred cccHHHHHHHHHHHHHHHHHh---------cCCCceeEeeccCCHHHHHhhhhh--ccceEecHHH
Confidence 455444 45567777777776 345778888777654 46666654 7999999864
No 270
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=46.24 E-value=51 Score=32.23 Aligned_cols=67 Identities=27% Similarity=0.230 Sum_probs=50.1
Q ss_pred CeEEEEcccccccCCCCC----CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 80 NVVLAYEPVWAIGTGKVA----TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a----~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
-.+|..=|++.-.|-... .++.++++.+.++. -.+||+--|+|+++|+.++.. .+.||+-+-++
T Consensus 129 aDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~-----------~~iPv~AiGGI~~~~~~~~~~-~Ga~giAvisa 196 (755)
T PRK09517 129 PDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQD-----------HGIASVAIGGVGLRNAAELAA-TGIDGLCVVSA 196 (755)
T ss_pred CCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCc-----------CCCCEEEECCCCHHHHHHHHH-cCCCEEEEehH
Confidence 468999999998876432 34565554333321 148999999999999998886 68999999998
Q ss_pred cCC
Q 039862 156 SLK 158 (173)
Q Consensus 156 sl~ 158 (173)
-+.
T Consensus 197 i~~ 199 (755)
T PRK09517 197 IMA 199 (755)
T ss_pred hhC
Confidence 774
No 271
>PRK04531 acetylglutamate kinase; Provisional
Probab=46.05 E-value=39 Score=30.62 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHHCCCeEEE-EeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEc
Q 039862 34 VAYALSRGLKVIA-CVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYE 86 (173)
Q Consensus 34 v~~al~~gl~pIl-CvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYE 86 (173)
++.+++.|..||+ |+|++.....-+-..+.+..+|...|. ..++++.-+
T Consensus 122 I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~----a~KLIfltd 171 (398)
T PRK04531 122 VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQ----PYKIIFLTG 171 (398)
T ss_pred HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcC----CCEEEEEEC
Confidence 7779999999999 566553111111245666777776664 345666553
No 272
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=46.00 E-value=37 Score=27.99 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=28.4
Q ss_pred ceEEEcCCCCccc-HHHHhc-CCCCCEEEeecccCC-hHHH
Q 039862 125 TRIIYGGSVNGAN-CKELAA-QPDVDGFLVGGASLK-PEFI 162 (173)
Q Consensus 125 i~ilYGGSV~~~n-~~~~~~-~~~vDG~LiG~asl~-~~f~ 162 (173)
+|+.+||+|..-. ++.++. ..++|=+.+|...++ |+|.
T Consensus 78 ~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l 118 (221)
T TIGR00734 78 VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITELL 118 (221)
T ss_pred CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHH
Confidence 5799999999776 445544 245899999999986 7743
No 273
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=45.60 E-value=1.5e+02 Score=23.42 Aligned_cols=107 Identities=12% Similarity=0.064 Sum_probs=60.4
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC-
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTKAIAEKISN- 77 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~- 77 (173)
.||+.|+++|+|==+|...+ .|+....-++.|.++||.. ..|...+ . ..|.+..+..+..
T Consensus 19 ~vk~~gi~fviiKateG~~~---~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~~-~-----------~~qA~~f~~~~~~~ 83 (191)
T cd06413 19 RVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLPRGAYHFFTFCRS-G-----------AEQAANFIRNVPKD 83 (191)
T ss_pred HHHhCCCcEEEEEEcCCCCc---cCHHHHHHHHHHHHcCCceEEEEEEecCCC-H-----------HHHHHHHHHhcCCC
Confidence 47889999999988776543 5566777889999999853 1232111 1 1344444444432
Q ss_pred --CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcC
Q 039862 78 --WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGG 131 (173)
Q Consensus 78 --~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGG 131 (173)
.-++++-+|.. -.....++..++...+....+.++... ...++||.+
T Consensus 84 ~~~~~~~lD~E~~--~~~~~~~~~~~~~~~~~~f~~~v~~~~-----G~~~~iY~~ 132 (191)
T cd06413 84 PGALPPVVDVEWN--GNSATCPSAEEVLAELQVFLDALEAHY-----GKRPIIYTT 132 (191)
T ss_pred CCcCCeEEEEEec--CCCCCCCCHHHHHHHHHHHHHHHHHHH-----CCCeEEEeC
Confidence 23567888852 111112455554433333333333322 246799976
No 274
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=45.52 E-value=2e+02 Score=24.92 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=35.0
Q ss_pred cceEEE-cCCCCcccHHHHhcCCCCCEEEeecccCC--hH-HHHHHHHHhh
Q 039862 124 STRIIY-GGSVNGANCKELAAQPDVDGFLVGGASLK--PE-FIDIIKSATV 170 (173)
Q Consensus 124 ~i~ilY-GGSV~~~n~~~~~~~~~vDG~LiG~asl~--~~-f~~Ii~~~~~ 170 (173)
++||+= ||=.+.+.+.+++. .+.|.|-||++.+. +. +.+|++.+..
T Consensus 237 ~ipIig~GGI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 286 (325)
T cd04739 237 KASLAASGGVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGTLLAGLEA 286 (325)
T ss_pred CCCEEEECCCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHHHHHHHHH
Confidence 588886 55556666888886 89999999999886 55 7777776543
No 275
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.13 E-value=44 Score=29.72 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=38.4
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCCcccHH---HHhcCCCC--CEEEeecccCCh
Q 039862 91 IGTGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVNGANCK---ELAAQPDV--DGFLVGGASLKP 159 (173)
Q Consensus 91 IGtG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~~~n~~---~~~~~~~v--DG~LiG~asl~~ 159 (173)
.|.|.+ .+-+++...+ ++.- .+.++|.+| +++|+.+-.. +++...+. .|||.|||-|..
T Consensus 216 ~~~~e~~yt~~eA~~~f---~~~~-------~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~ 281 (324)
T PRK12399 216 FAEGEVVYTKEEAAQHF---KEQD-------AATHLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLCGRATWAG 281 (324)
T ss_pred cCcccccccHHHHHHHH---HHHh-------hccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEeehhhhHh
Confidence 566644 5556555433 3321 134677666 9999988754 45556666 899999999974
No 276
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.05 E-value=1.7e+02 Score=23.91 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=7.7
Q ss_pred CCeEEEEccc
Q 039862 79 DNVVLAYEPV 88 (173)
Q Consensus 79 ~~iiIAYEPv 88 (173)
..+.||+||.
T Consensus 141 ~gv~l~iE~~ 150 (275)
T PRK09856 141 IGMDLILEPL 150 (275)
T ss_pred cCCEEEEecC
Confidence 4688888885
No 277
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=44.96 E-value=34 Score=30.67 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
.+.+.+.++.||+. |+ +++|+-|.=++.+-+.+|+. .++|++.||
T Consensus 133 s~~~~~~ik~ik~~----~~-----~~~viaGNV~T~e~a~~L~~-aGad~vkVG 177 (352)
T PF00478_consen 133 SEHVIDMIKKIKKK----FP-----DVPVIAGNVVTYEGAKDLID-AGADAVKVG 177 (352)
T ss_dssp SHHHHHHHHHHHHH----ST-----TSEEEEEEE-SHHHHHHHHH-TT-SEEEES
T ss_pred HHHHHHHHHHHHHh----CC-----CceEEecccCCHHHHHHHHH-cCCCEEEEe
Confidence 34444455555443 43 68999898888888888777 889999997
No 278
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=44.47 E-value=47 Score=27.74 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=27.9
Q ss_pred CcceEEEcCCCC-------cccHHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVN-------GANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~-------~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
..+||+-=|+++ .+|+.+++. .|.||+-+|++.+.
T Consensus 191 ~~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 191 CPAPVVVAGGPKTNSDREFLQMIKDAME-AGAAGVAVGRNIFQ 232 (258)
T ss_pred CCCcEEEecCCCCCCHHHHHHHHHHHHH-cCCcEEehhhHhhc
Confidence 358888878887 566666666 79999999999886
No 279
>PLN02209 serine carboxypeptidase
Probab=44.41 E-value=57 Score=29.87 Aligned_cols=61 Identities=20% Similarity=0.427 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEE---EcCCCCcccHHHHhcC--------CCCCEEEeecccCChH
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRII---YGGSVNGANCKELAAQ--------PDVDGFLVGGASLKPE 160 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il---YGGSV~~~n~~~~~~~--------~~vDG~LiG~asl~~~ 160 (173)
.+.++++.++++.++.. |........-|. |||---|.=+..+... .++.|++||+.-+++.
T Consensus 144 ~~~a~~~~~fl~~f~~~-~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 144 TSEVKKIHEFLQKWLIK-HPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHIE 215 (437)
T ss_pred HHHHHHHHHHHHHHHHh-CccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccChh
Confidence 46788999999999854 443322233232 8888888777777653 3678999999988763
No 280
>PRK12616 pyridoxal kinase; Reviewed
Probab=43.92 E-value=42 Score=28.10 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 59 STVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 59 ~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
-..+++..|++.++.++ |+-+|=+|..++.+.++.+.+.++++
T Consensus 57 ~~~~~i~~ql~~l~~d~-----------~~~aikiG~l~s~~~i~~i~~~l~~~ 99 (270)
T PRK12616 57 IDTDTIRAQLSTIVDGI-----------GVDAMKTGMLPTVDIIELAADTIKEK 99 (270)
T ss_pred CCHHHHHHHHHHHHcCC-----------CCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 35689999999988743 66778888888999888888888764
No 281
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=42.80 E-value=18 Score=30.98 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=34.0
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
+++...|-+||+|-. |+- .=+.+.+..-+.++...|+.|++=|-...
T Consensus 33 E~~a~~GfD~v~iD~-EHg---~~~~~~l~~~i~a~~~~g~~~lVRvp~~~ 79 (267)
T PRK10128 33 EIAATSGYDWLLIDG-EHA---PNTIQDLYHQLQAIAPYASQPVIRPVEGS 79 (267)
T ss_pred HHHHHcCCCEEEEcc-ccC---CCCHHHHHHHHHHHHhcCCCeEEECCCCC
Confidence 678888999998863 221 12445566678888889999999887664
No 282
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=42.41 E-value=56 Score=23.26 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=24.2
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
+++++.||..-..+... +.+|-+++|-.-.
T Consensus 80 ~~~ivvGG~~~t~~~~~----~~~d~~~~Ge~e~ 109 (125)
T cd02065 80 DIPVVVGGAHPTADPEE----PKVDAVVIGEGEY 109 (125)
T ss_pred CCeEEEeCCcCCccccc----cccceeeeCCeEE
Confidence 69999999887777665 7899999997543
No 283
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=42.25 E-value=47 Score=23.00 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=23.7
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGET 51 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~ 51 (173)
++|++.||+.+++|+-- +.- .....+.|+.++...+++
T Consensus 57 ~~l~~~~v~~vi~~~iG------~~~------~~~l~~~gI~v~~~~~~~ 94 (103)
T cd00851 57 EFLADEGVDVVIVGGIG------PRA------LNKLRNAGIKVYKGAEGT 94 (103)
T ss_pred HHHHHcCCCEEEeCCCC------cCH------HHHHHHCCCEEEEcCCCC
Confidence 45677788888887533 322 245555688887666544
No 284
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=42.16 E-value=30 Score=32.95 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=32.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCC--EEEe
Q 039862 91 IGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVD--GFLV 152 (173)
Q Consensus 91 IGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vD--G~Li 152 (173)
-|||++.+.+.++ .+ ....|++-.|+++|+|+.++++...-. |+=|
T Consensus 142 GGtG~~fdw~~~~-------~~---------~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDv 189 (610)
T PRK13803 142 GGSGKSFDWEKFY-------NY---------NFKFPFFLSGGLSPTNFDRIINLTHPQILGIDV 189 (610)
T ss_pred CCCCCccChHHhh-------hc---------ccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEc
Confidence 4789998876542 11 113579999999999999999854444 5544
No 285
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=41.92 E-value=9.4 Score=27.07 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhccchhhcCcceEEEcCC
Q 039862 100 AQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS 132 (173)
Q Consensus 100 e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS 132 (173)
+++++-+++--.-+.++.|+.++.++-||||.-
T Consensus 25 D~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~v 57 (77)
T PRK01026 25 DEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLV 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 344455555555667778888899999999963
No 286
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.65 E-value=93 Score=24.47 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChHHHHHHHHH
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~f~~Ii~~~ 168 (173)
.+.+.++++.+|+. | .+.+.++-||=+.+++ ...+.+.++|+++-=+-.+...-..+++.+
T Consensus 77 ~~l~~~lve~lre~-----G---~~~i~v~~GGvip~~d-~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 77 LTLVPGLVEALREA-----G---VEDILVVVGGVIPPGD-YQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HHHHHHHHHHHHHh-----C---CcceEEeecCccCchh-HHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 44555666665554 3 4556644455444444 666777999999977655543344444443
No 287
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.61 E-value=61 Score=27.96 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCC-CCcccHHHH---hcCCCCCEEEeeccc-C--Ch----H-HH
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS-VNGANCKEL---AAQPDVDGFLVGGAS-L--KP----E-FI 162 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS-V~~~n~~~~---~~~~~vDG~LiG~as-l--~~----~-f~ 162 (173)
...|.|+-.++++...+.. +.++||+.|-+ .+.+++.++ +...++||+|+--=. . ++ + |.
T Consensus 56 ~~Lt~eEr~~v~~~~~~~~--------~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~ 127 (309)
T cd00952 56 ATLTWEEKQAFVATVVETV--------AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYR 127 (309)
T ss_pred hhCCHHHHHHHHHHHHHHh--------CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHH
Confidence 3477888888887776653 45699999865 566666554 457899999996522 2 21 2 67
Q ss_pred HHHHHH
Q 039862 163 DIIKSA 168 (173)
Q Consensus 163 ~Ii~~~ 168 (173)
.|++..
T Consensus 128 ~va~a~ 133 (309)
T cd00952 128 DVAEAV 133 (309)
T ss_pred HHHHhC
Confidence 777654
No 288
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=41.57 E-value=69 Score=27.47 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhc---CCCCCEEEe
Q 039862 92 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAA---QPDVDGFLV 152 (173)
Q Consensus 92 GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~---~~~vDG~Li 152 (173)
|-+-..|+++-.++++...+.. +.++||+.|-+-+..++.+++. ..|+|++++
T Consensus 52 GE~~~Lt~eEr~~~~~~~~~~~--------~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 52 GEFFSLTPDEYSQVVRAAVETT--------AGRVPVIAGAGGGTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred cCcccCCHHHHHHHHHHHHHHh--------CCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEE
No 289
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=41.07 E-value=2.2e+02 Score=23.98 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=67.9
Q ss_pred chhhcCCCEEEE-cccccccccC-CCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 3 MLVNLSIPWVIL-GHSERRALLN-ESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 3 mLkd~G~~~vii-GHSERR~~~~-E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
.|.+.|++.+++ |++=.=..+. |.-..+-+.+..+.+..+..|.++|.+. +.+ ..++.+.+.. ..-.
T Consensus 27 ~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s-------~~~-~i~~a~~a~~---~Gad 95 (285)
T TIGR00674 27 FQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA-------TEE-AISLTKFAED---VGAD 95 (285)
T ss_pred HHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc-------HHH-HHHHHHHHHH---cCCC
Confidence 466789999987 4532111111 1111232334444455688888998753 222 2233333222 1122
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcce-EEE------cCCCCcccHHHHhcCCCCCEEEee
Q 039862 81 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTR-IIY------GGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~-ilY------GGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
-++..=|.|. .++++.+-+-.+.|-+. .++| ++| |=.++++-..+++..++|-|+=
T Consensus 96 ~v~v~pP~y~-----~~~~~~i~~~~~~i~~~----------~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK-- 158 (285)
T TIGR00674 96 GFLVVTPYYN-----KPTQEGLYQHFKAIAEE----------VDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIK-- 158 (285)
T ss_pred EEEEcCCcCC-----CCCHHHHHHHHHHHHhc----------CCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEE--
Confidence 3444557662 24555544433333221 1244 344 4477888888888777655543
Q ss_pred cccCCh-HHHHHHHH
Q 039862 154 GASLKP-EFIDIIKS 167 (173)
Q Consensus 154 ~asl~~-~f~~Ii~~ 167 (173)
.++-+. .|..+++.
T Consensus 159 ~s~~d~~~~~~l~~~ 173 (285)
T TIGR00674 159 EATGNLERISEIKAI 173 (285)
T ss_pred eCCCCHHHHHHHHHh
Confidence 234443 36666543
No 290
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=41.04 E-value=86 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=26.1
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
.+++++==|+|+++|+.++++ .+..++-+|+.=.+.
T Consensus 147 p~~~~~ptGGV~~~N~~~~l~-ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 147 PDLPFMPTGGVNPDNLAEYLK-AGAVAVGGGSWLFPK 182 (196)
T ss_dssp TT-EEEEBSS--TTTHHHHHT-STTBSEEEESGGGSH
T ss_pred CCCeEEEcCCCCHHHHHHHHh-CCCEEEEECchhcCH
Confidence 469999999999999999999 556777777765553
No 291
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=41.02 E-value=57 Score=22.96 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCC-CCHHHHHHH
Q 039862 59 STVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKV-ATPAQAQEV 105 (173)
Q Consensus 59 ~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~-a~~e~i~~~ 105 (173)
.+.+.|.+=++.+|......+---||. | +||||.- .+++++.++
T Consensus 73 ~~~~~L~~~~~~~l~~a~~~~~~sIa~-P--~ig~G~~g~~~~~~a~i 117 (118)
T PF01661_consen 73 NSYEALESAYRNALQKAEENGIKSIAF-P--AIGTGIGGFPWDEVAEI 117 (118)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTSEEEE-E--STTSSTTSBTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCccccc-C--cccCCCCCCCHHHHHhh
Confidence 455555555666555332222123444 5 5777765 556666554
No 292
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=40.95 E-value=9.6 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhccchhhcCcceEEEcCC
Q 039862 100 AQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS 132 (173)
Q Consensus 100 e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS 132 (173)
+.+++-+++.-.-+.++.|+.++.++-||||.-
T Consensus 22 d~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~v 54 (70)
T TIGR01149 22 DEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLV 54 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 444555556666667778888899999999964
No 293
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=40.94 E-value=57 Score=26.84 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 59 STVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 59 ~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
-..+++.+|++.++..+ |+-+|.+|...+++.++.+.+.+++.
T Consensus 50 ~~~~~~~~q~~~~~~d~-----------~~~aikiG~l~~~~~~~~i~~~~~~~ 92 (254)
T TIGR00097 50 IPPDFVEAQLDAVFSDI-----------PVDAAKTGMLASAEIVEAVARKLREY 92 (254)
T ss_pred CCHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 34689999999988742 55677778888888887777776653
No 294
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=40.79 E-value=9.9 Score=26.46 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhccchhhcCcceEEEcC
Q 039862 100 AQAQEVHAELRKWLKDNVSAEVAASTRIIYGG 131 (173)
Q Consensus 100 e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGG 131 (173)
+.|++-+++...-+.++.|...+.++-||||-
T Consensus 22 d~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~ 53 (70)
T PF04210_consen 22 DEIEEKVEFTNAEIAQRAGKKIGRDIGILYGL 53 (70)
T ss_pred HHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHH
Confidence 44555566666667778888889999999984
No 295
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=40.69 E-value=59 Score=28.06 Aligned_cols=60 Identities=18% Similarity=0.390 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEE---EcCCCCcccHHHHhcC--------CCCCEEEeecccCCh
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRII---YGGSVNGANCKELAAQ--------PDVDGFLVGGASLKP 159 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il---YGGSV~~~n~~~~~~~--------~~vDG~LiG~asl~~ 159 (173)
.+.++++..+++.++.. |.+-.....-|- |||---|.=+..+... .++-|++||..-.++
T Consensus 28 ~~~a~d~~~fL~~Ff~~-~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 28 ISEVKRTHEFLQKWLSR-HPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYM 98 (319)
T ss_pred HHHHHHHHHHHHHHHHh-CcccccCCeEEEeeccccchHHHHHHHHHhhcccccCCceeeeEEEeCCCCCCc
Confidence 35678899999998743 443222222222 8998888877777653 367899999987765
No 296
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=40.56 E-value=68 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEE---EcCCCCcccHHHHhcC--------CCCCEEEeecccCCh
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRII---YGGSVNGANCKELAAQ--------PDVDGFLVGGASLKP 159 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il---YGGSV~~~n~~~~~~~--------~~vDG~LiG~asl~~ 159 (173)
.+.++++.++++.++.. |..-....+-|. |||-.-|.=+..+... .++.|++||...+++
T Consensus 148 ~~~a~d~~~~l~~f~~~-~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp 218 (462)
T PTZ00472 148 SEVSEDMYNFLQAFFGS-HEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDP 218 (462)
T ss_pred HHHHHHHHHHHHHHHHh-CccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccCh
Confidence 44567788888877643 332112223222 8999998888888642 468999999988875
No 297
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.40 E-value=74 Score=24.37 Aligned_cols=52 Identities=10% Similarity=0.115 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-cccHH----HHhcCCCCCEEEeeccc
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-GANCK----ELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~----~~~~~~~vDG~LiG~as 156 (173)
.+.+.+.++.+.+|+. + ..+++|+-||... ++... +.+...++|.+|==+..
T Consensus 62 ~~~~~~~~~~~~l~~~-----g---l~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~ 118 (128)
T cd02072 62 HGEIDCKGLREKCDEA-----G---LKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTP 118 (128)
T ss_pred CCHHHHHHHHHHHHHC-----C---CCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCCC
Confidence 4467777777777663 2 2359999999853 44433 55778999999875553
No 298
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=40.34 E-value=1.9e+02 Score=25.21 Aligned_cols=152 Identities=19% Similarity=0.112 Sum_probs=82.5
Q ss_pred cchhhcCCCEEEEcc-----cccccccC---CCHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGH-----SERRALLN---ESNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTK 69 (173)
Q Consensus 2 ~mLkd~G~~~viiGH-----SERR~~~~---E~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~ 69 (173)
+.||++|++.+..+. .|.|+... -+-+..-+-++.|.+.|+.+ |+=.||+.+++. ++...+. +|+
T Consensus 145 ~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~--~~l~~lr-~l~ 221 (343)
T TIGR03551 145 KRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWV--DHLLILR-EIQ 221 (343)
T ss_pred HHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHH--HHHHHHH-Hhh
Confidence 469999999876332 23333222 25556668899999999965 444578776653 2222222 122
Q ss_pred HHHhccCCCCC-eEEEEcccccccCCC--------CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccH--
Q 039862 70 AIAEKISNWDN-VVLAYEPVWAIGTGK--------VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANC-- 138 (173)
Q Consensus 70 ~~l~~v~~~~~-iiIAYEPvwAIGtG~--------~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~-- 138 (173)
.--.+ +.. +-+-|-|. ||.. .+++++.-.++...|=.+- +.+.-+=||.++.+..
T Consensus 222 ~~~~~---~~~~iP~~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp--------~~~~~i~a~~~~l~~~~~ 287 (343)
T TIGR03551 222 EETGG---FTEFVPLPFVHY---NAPLYLKGMARPGPTGREDLKVHAIARILLH--------GLIDNIQASWVKLGKKLA 287 (343)
T ss_pred HHhCC---eeEEEeccccCC---CCccccccCCCCCCCHHHHHHHHHHHHHhCC--------CcccCeeccccccCHHHH
Confidence 21111 111 11222232 4432 2578888888888886641 1233455665554432
Q ss_pred HHHhc--CCCCCEEEeec-----c------cCCh-HHHHHHHHHhh
Q 039862 139 KELAA--QPDVDGFLVGG-----A------SLKP-EFIDIIKSATV 170 (173)
Q Consensus 139 ~~~~~--~~~vDG~LiG~-----a------sl~~-~f~~Ii~~~~~ 170 (173)
...+. -.+++|.++.. | .+++ ++..+|+.+..
T Consensus 288 ~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~ 333 (343)
T TIGR03551 288 QVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGR 333 (343)
T ss_pred HHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCC
Confidence 22222 57789988751 1 2343 37888876654
No 299
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=40.08 E-value=21 Score=30.07 Aligned_cols=48 Identities=10% Similarity=-0.037 Sum_probs=33.3
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
++++...|-+||+|-- |+- .+ +.+.+..=+.++...|+.|++=|-...
T Consensus 26 ~e~~a~~G~D~v~iD~-EHg-~~--~~~~~~~~~~a~~~~g~~~~VRvp~~~ 73 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDG-EHA-PN--DVLTFIPQLMALKGSASAPVVRPPWNE 73 (249)
T ss_pred HHHHHhcCCCEEEEec-ccC-CC--CHHHHHHHHHHHhhcCCCcEEECCCCC
Confidence 3678889999999862 221 11 334455667788889999999997653
No 300
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=39.97 E-value=21 Score=29.97 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=66.7
Q ss_pred cchhhcCCCEEEEc--ccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCC
Q 039862 2 EMLVNLSIPWVILG--HSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD 79 (173)
Q Consensus 2 ~mLkd~G~~~viiG--HSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~ 79 (173)
+++...|.++|++- |+- + +.+.+..-+.++...|..|++=|-..... .+..+|+. ...
T Consensus 27 e~~~~~g~D~v~iDlEH~~----~--~~~~~~~~~~a~~~~g~~~~VRv~~~~~~------------~i~~~Ld~--Ga~ 86 (249)
T TIGR02311 27 EICAGAGFDWLLIDGEHAP----N--DVRTILSQLQALAPYPSSPVVRPAIGDPV------------LIKQLLDI--GAQ 86 (249)
T ss_pred HHHHhcCCCEEEEeccCCC----C--CHHHHHHHHHHHHhcCCCcEEECCCCCHH------------HHHHHhCC--CCC
Confidence 56778899999885 553 1 44455555666667799999888655321 23334431 012
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhh-cCc-ce-EEEcC--------------------CCCcc
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV-AAS-TR-IIYGG--------------------SVNGA 136 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~-~~~-i~-ilYGG--------------------SV~~~ 136 (173)
-+++ | .+-|+|+++++++..|-- ..|..- +.. .| .-||. ----+
T Consensus 87 gIiv---P-------~v~s~e~a~~~v~~~~y~---P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~ 153 (249)
T TIGR02311 87 TLLV---P-------MIETAEQAEAAVAATRYP---PMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALD 153 (249)
T ss_pred EEEe---c-------CcCCHHHHHHHHHHcCCC---CCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHH
Confidence 2333 2 345677777766666510 011000 000 00 11110 00136
Q ss_pred cHHHHhcCCCCCEEEeecc
Q 039862 137 NCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 137 n~~~~~~~~~vDG~LiG~a 155 (173)
|+.+|++.++|||+++|..
T Consensus 154 n~~eI~a~~gvd~l~~G~~ 172 (249)
T TIGR02311 154 NLEEIAAVEGVDGVFIGPA 172 (249)
T ss_pred HHHHHHCCCCCcEEEECHH
Confidence 8899999999999999974
No 301
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=39.96 E-value=89 Score=25.72 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=24.8
Q ss_pred eEEEcCCCCc---ccHHHHhcCCCCCEEEeecccCC---hHHHHHHHHHh
Q 039862 126 RIIYGGSVNG---ANCKELAAQPDVDGFLVGGASLK---PEFIDIIKSAT 169 (173)
Q Consensus 126 ~ilYGGSV~~---~n~~~~~~~~~vDG~LiG~asl~---~~f~~Ii~~~~ 169 (173)
.++-||.-.. .-++++.+ .++||+.|||.+.. .++.++++.+.
T Consensus 59 gvIqGg~~~~lR~~s~~~l~~-~~~~g~~igGl~~~~~~~~~~~~l~~i~ 107 (238)
T PF01702_consen 59 GVIQGGDDKDLRRRSAEELSE-DGFDGYAIGGLSPGEEKEERLEILEAII 107 (238)
T ss_dssp EEE--TT-HHHHHHHHHHHHH-SS-SEEEE-SSSSSSHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHh-cccccccccCCcCCCCHHHHHHHHHHHH
Confidence 3555665332 23566666 48999999997764 24888887653
No 302
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=39.88 E-value=55 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=26.0
Q ss_pred CcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl~ 158 (173)
..+||+.-|+|.... +.+.+. .|.|+++||++-|.
T Consensus 275 ~~i~vi~dGGIr~g~Di~kaLa-lGA~~V~iGr~~l~ 310 (351)
T cd04737 275 HRVPIIFDSGVRRGEHVFKALA-SGADAVAVGRPVLY 310 (351)
T ss_pred CCCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 458888866666554 555555 89999999998775
No 303
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=39.75 E-value=1.3e+02 Score=21.09 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++..++..+..++..++. +..+.+++||++ .+-+.+.+...++|-+.+|.-...
T Consensus 44 ~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~-~~~I~~~~~~~~~dllviG~~~~~ 97 (124)
T cd01987 44 SEAERRRLAEALRLAEEL-----GAEVVTLPGDDV-AEAIVEFAREHNVTQIVVGKSRRS 97 (124)
T ss_pred CHHHHHHHHHHHHHHHHc-----CCEEEEEeCCcH-HHHHHHHHHHcCCCEEEeCCCCCc
Confidence 344455555555444331 234557778886 456788888999999999987654
No 304
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=39.09 E-value=1.8e+02 Score=22.52 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=56.5
Q ss_pred cCCCEEEEccccccc----c--cCCCHHHHHHHHHHHHHC--CCeEEEEeCCCHHHHh-----cCChHHHHHHHHHHHHh
Q 039862 7 LSIPWVILGHSERRA----L--LNESNDFVGDKVAYALSR--GLKVIACVGETLEQRE-----SGSTVAVVAEQTKAIAE 73 (173)
Q Consensus 7 ~G~~~viiGHSERR~----~--~~E~~~~i~~Kv~~al~~--gl~pIlCvGE~~~~r~-----~~~~~~~l~~Ql~~~l~ 73 (173)
-+|++++.+-..-.. . ..+..+.....++.+.+. |++.++++|....... .....+.+.+++...+.
T Consensus 22 ~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 101 (210)
T cd00598 22 SLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLK 101 (210)
T ss_pred ccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 356666666443321 1 123444455667777776 9999999997432211 11122334445544444
Q ss_pred ccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHH
Q 039862 74 KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 114 (173)
Q Consensus 74 ~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~ 114 (173)
.- .+.-+-|-+|.+-.-+. .+.+.....++.+|+.+.
T Consensus 102 ~~-~~DGidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~ 138 (210)
T cd00598 102 TY-GFDGVDIDWEYPGAADN---SDRENFITLLRELRSALG 138 (210)
T ss_pred Hc-CCCceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhc
Confidence 32 26678889998754322 234555555666666553
No 305
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=38.95 E-value=2.5e+02 Score=24.05 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=38.6
Q ss_pred CcchhhcCCCEEEEc---ccccccccCCCHHHH-----------------HHHHHHHHHCCCeEEEEe---CCCHHHHhc
Q 039862 1 AEMLVNLSIPWVILG---HSERRALLNESNDFV-----------------GDKVAYALSRGLKVIACV---GETLEQRES 57 (173)
Q Consensus 1 a~mLkd~G~~~viiG---HSERR~~~~E~~~~i-----------------~~Kv~~al~~gl~pIlCv---GE~~~~r~~ 57 (173)
++.|.++|++++.+| |+...-...+..+.+ .+=+++|++.|+..|-.. .|....++.
T Consensus 32 a~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~ 111 (287)
T PRK05692 32 IDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTPNLKGLEAALAAGADEVAVFASASEAFSQKNI 111 (287)
T ss_pred HHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEecCHHHHHHHHHcCCCEEEEEEecCHHHHHHHh
Confidence 357889999999999 332111112211111 112567777777654333 333334455
Q ss_pred CChHHHHHHHHHHHHh
Q 039862 58 GSTVAVVAEQTKAIAE 73 (173)
Q Consensus 58 ~~~~~~l~~Ql~~~l~ 73 (173)
+.+.+...+++...++
T Consensus 112 ~~~~~e~l~~~~~~v~ 127 (287)
T PRK05692 112 NCSIAESLERFEPVAE 127 (287)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666665555555554
No 306
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=38.56 E-value=51 Score=29.67 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.8
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeeccc
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~as 156 (173)
++||+-|+-.+.+.+.+++. .++||+++|+.+
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~-aGaDgV~~G~gg 219 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMR-TGAAGVIVGPGG 219 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 48898878777777888887 899999988643
No 307
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=38.52 E-value=83 Score=26.74 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHH---hcCCCCCEEEeec
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKEL---AAQPDVDGFLVGG 154 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~---~~~~~vDG~LiG~ 154 (173)
...|.++-.++++...+.. +.++||+-|-+-+..++.++ +...++||+++--
T Consensus 48 ~~Ls~eEr~~l~~~~~~~~--------~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 48 FSLTPDEYAQVVRAAVEET--------AGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred ccCCHHHHHHHHHHHHHHh--------CCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 3467777777776666553 34688888766566665544 3578899999954
No 308
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.25 E-value=17 Score=27.54 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=33.3
Q ss_pred CCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 039862 8 SIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGE 50 (173)
Q Consensus 8 G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE 50 (173)
.++..+.|-|||+..-+|.| .-+-+..+...|.+|..|..-
T Consensus 36 dVelifFGpse~~la~~~~~--~l~~l~~~~s~g~~p~AC~~v 76 (113)
T COG3370 36 DVELIFFGPSEKLLAKNDGD--SLKMLQELRSLGIKPLACKVV 76 (113)
T ss_pred ceEEEEECchHHHHHhcchH--HHHHHHHHHHcCCcchHHHHH
Confidence 46788999999997666665 346688999999999999864
No 309
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=38.21 E-value=54 Score=29.08 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=27.4
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+++|+.-|+|......--+-..|.|.+.||++.|.
T Consensus 270 ~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~ 305 (344)
T cd02922 270 DKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY 305 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 469999988888776443333479999999998765
No 310
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=38.18 E-value=64 Score=28.46 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 59 STVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 59 ~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
-..+++.+|++.++..+ |+-+|=+|..++.+.++.++++|+++
T Consensus 56 v~~~~i~~Ql~all~D~-----------~i~aIKiGmL~s~e~i~~v~~~l~~~ 98 (321)
T PTZ00493 56 IEEKFIVEQLDSIFADV-----------TIDVVKLGVLYSKKIISLVHNYITNM 98 (321)
T ss_pred CCHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHHh
Confidence 45689999999998743 56667777777777777777777654
No 311
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=37.99 E-value=2.2e+02 Score=23.09 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHH
Q 039862 27 NDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVH 106 (173)
Q Consensus 27 ~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~ 106 (173)
-+.+..-++.+.+.|+.+.+++-....- ..+.+.+.+.++.+.+ .....|-+-+. +| .++|+++.+.+
T Consensus 114 ~~~~~~~i~~a~~~G~~v~~~~~~~~~~---~~~~~~l~~~~~~~~~----~g~~~i~l~Dt----~G-~~~P~~v~~li 181 (265)
T cd03174 114 LENAEEAIEAAKEAGLEVEGSLEDAFGC---KTDPEYVLEVAKALEE----AGADEISLKDT----VG-LATPEEVAELV 181 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCC---CCCHHHHHHHHHHHHH----cCCCEEEechh----cC-CcCHHHHHHHH
Confidence 3556677899999999999988543210 1344555555554443 22223333333 33 48899999999
Q ss_pred HHHHHHH
Q 039862 107 AELRKWL 113 (173)
Q Consensus 107 ~~Ir~~~ 113 (173)
+.+|+..
T Consensus 182 ~~l~~~~ 188 (265)
T cd03174 182 KALREAL 188 (265)
T ss_pred HHHHHhC
Confidence 9988763
No 312
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.81 E-value=1.1e+02 Score=23.18 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
...+.+.++++.+++. + ..+++++-||-.-++. .+-+...++|+++==+..+.
T Consensus 65 ~~~~~~~~~~~~L~~~-----g---~~~i~vivGG~~~~~~-~~~l~~~Gvd~~~~~gt~~~ 117 (132)
T TIGR00640 65 GHLTLVPALRKELDKL-----G---RPDILVVVGGVIPPQD-FDELKEMGVAEIFGPGTPIP 117 (132)
T ss_pred hhHHHHHHHHHHHHhc-----C---CCCCEEEEeCCCChHh-HHHHHHCCCCEEECCCCCHH
Confidence 3455566666665543 1 2357777777775544 45566799999987766543
No 313
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=37.64 E-value=21 Score=30.17 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhccchhhcCcceEEEcCCC
Q 039862 102 AQEVHAELRKWLKDNVSAEVAASTRIIYGGSV 133 (173)
Q Consensus 102 i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV 133 (173)
.+++.+.|.+... ...+|||-||+-
T Consensus 42 ~~~a~~~i~~i~~-------rgk~PIlvGGTg 66 (253)
T PF01715_consen 42 QRDAREAIEDILA-------RGKIPILVGGTG 66 (253)
T ss_dssp HHHHHHHHHHHHH-------TT-EEEEEES-H
T ss_pred HHHHHHHHHHHHh-------cCCeEEEECChH
Confidence 3445555555432 357999999973
No 314
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=37.50 E-value=24 Score=29.90 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=32.8
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
+++...|-+||+|-- |+- .| +.+.+..=+.++...|+.|++=|-++.
T Consensus 34 e~~a~~G~D~v~iD~-EHg-~~--~~~~~~~~i~a~~~~g~~~lVRvp~~~ 80 (256)
T PRK10558 34 EVLGLAGFDWLVLDG-EHA-PN--DVSTFIPQLMALKGSASAPVVRVPTNE 80 (256)
T ss_pred HHHHhcCCCEEEEcc-ccC-CC--CHHHHHHHHHHHhhcCCCcEEECCCCC
Confidence 577888999999852 221 11 334455667888889999999997764
No 315
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=37.45 E-value=74 Score=29.54 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
++.+.++++.||+. | .+++|+-|-.++.+.+..+.. .++|++-||..
T Consensus 250 ~~~~~~~i~~i~~~----~-----~~~~vi~g~~~t~~~~~~l~~-~G~d~i~vg~g 296 (475)
T TIGR01303 250 QVKMISAIKAVRAL----D-----LGVPIVAGNVVSAEGVRDLLE-AGANIIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHHHH----C-----CCCeEEEeccCCHHHHHHHHH-hCCCEEEECCc
Confidence 45556666666653 2 358899988889888888776 89999998654
No 316
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.43 E-value=58 Score=26.89 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=33.0
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh-------HHHHHHHHHh
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-------EFIDIIKSAT 169 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~-------~f~~Ii~~~~ 169 (173)
.++++.=-|+|+++|+.++++.. +-+.+||+.|-+ +|..|-+.+.
T Consensus 154 p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~~~~~~~~~~~~i~~~a~ 205 (212)
T PRK05718 154 PDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVPKDAIENGDWDRITRLAR 205 (212)
T ss_pred CCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCCcchhccccHHHHHHHHH
Confidence 35999999999999999999966 556666776631 3666655443
No 317
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=37.29 E-value=65 Score=30.43 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=29.1
Q ss_pred CcceEEE-cCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIY-GGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilY-GGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
-++||++ ||-=+++...+++...++|++|.|+.-+.
T Consensus 481 ~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 481 VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 3589987 66667777999999999999999986543
No 318
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=36.62 E-value=54 Score=26.58 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=34.0
Q ss_pred EEEEcccccccccCCCHHHHHHHHHHH---------HHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 11 WVILGHSERRALLNESNDFVGDKVAYA---------LSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 11 ~viiGHSERR~~~~E~~~~i~~Kv~~a---------l~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
.++.+|.+ +.+-.+..+.+.+++..+ -..+..|+.=..+ +....-+..+.+.++. ...+
T Consensus 4 Lii~aHP~-~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d-------~~~~~Dv~~E~e~l~~----AD~i 71 (189)
T COG2249 4 LIIYAHPN-ESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPD-------GEFPIDVKAEQEKLLW----ADVI 71 (189)
T ss_pred EEEEeCch-hhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCc-------cCCCCCHHHHHHHHHh----cceE
Confidence 57899999 444344433332222211 1345555555554 1111122333333332 4568
Q ss_pred EEEEccccccc
Q 039862 82 VLAYEPVWAIG 92 (173)
Q Consensus 82 iIAYEPvwAIG 92 (173)
++.| |+|=-|
T Consensus 72 vlqf-PlwW~~ 81 (189)
T COG2249 72 VLQF-PLWWYS 81 (189)
T ss_pred EEEc-Cchhcc
Confidence 8888 998653
No 319
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=36.49 E-value=96 Score=26.46 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=43.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcC----CCCcccHHHHhcCCCCCEEEeeccc
Q 039862 89 WAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGG----SVNGANCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 89 wAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGG----SV~~~n~~~~~~~~~vDG~LiG~as 156 (173)
-..|||-..+|+.++.+...+-+. |. .=-|+|+| -=.|.-+.+++++.++--+.||.+-
T Consensus 35 rVvgsgaKM~Pe~veaav~~~~e~----~~-----pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 35 RVVGSGAKMDPECVEAAVTEMLEE----FN-----PDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred EEeccccccChHHHHHHHHHHHHh----cC-----CCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
Confidence 567999999999988877654322 11 12277765 3456779999999999999999874
No 320
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.46 E-value=53 Score=29.46 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=25.3
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
++||+-|+-.+++.+.+++. .++|++.||..
T Consensus 187 ~ipVIaG~V~t~e~A~~l~~-aGAD~V~VG~G 217 (368)
T PRK08649 187 DVPVIVGGCVTYTTALHLMR-TGAAGVLVGIG 217 (368)
T ss_pred CCCEEEeCCCCHHHHHHHHH-cCCCEEEECCC
Confidence 48888888777777888886 99999999853
No 321
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=36.22 E-value=43 Score=22.76 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=29.1
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLE 53 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~ 53 (173)
..|++.|.+..+ -.+. ..+.++++.|.+.|..-++.+|+.+.
T Consensus 25 ~~Lr~~g~~v~~-d~~~---------~~l~k~i~~a~~~g~~~~iiiG~~e~ 66 (94)
T cd00861 25 AELQAAGVDVLL-DDRN---------ERPGVKFADADLIGIPYRIVVGKKSA 66 (94)
T ss_pred HHHHHCCCEEEE-ECCC---------CCcccchhHHHhcCCCEEEEECCchh
Confidence 356666665543 2221 23578899999999999999998753
No 322
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.83 E-value=1.4e+02 Score=27.36 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=43.7
Q ss_pred EEEccccccc-CCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC
Q 039862 83 LAYEPVWAIG-TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 83 IAYEPvwAIG-tG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl 157 (173)
|.-| ..|-| ||..+...-+.. +..+|+.+...++. ...+||+-.|+|.... +...+. .|.||+.+|++-+
T Consensus 181 Ivvq-~EAGGH~g~~~~~~Llp~-v~~l~d~v~~~~~~--~~~ipViAAGGI~tg~~vaAA~a-lGAd~V~~GT~fl 252 (418)
T cd04742 181 ITVE-ADSGGHTDNRPLSVLLPT-IIRLRDELAARYGY--RRPIRVGAAGGIGTPEAAAAAFA-LGADFIVTGSINQ 252 (418)
T ss_pred EEEc-ccCCCCCCCccHHhHHHH-HHHHHHHHhhcccc--CCCceEEEECCCCCHHHHHHHHH-cCCcEEeeccHHH
Confidence 3347 68888 455444444343 34445555444442 2369999988885555 455554 7999999999755
No 323
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=35.81 E-value=1.7e+02 Score=24.28 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC---h-H-HHHHHHHH
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK---P-E-FIDIIKSA 168 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~---~-~-f~~Ii~~~ 168 (173)
.+.||.++.. ||+.. +.+.++.--|+|+++.+ ....+..+|-+.|||+-.+ | + +.+|.+..
T Consensus 146 ~v~s~~e~~~----ir~~~--------~~~~~i~VtpGIr~~~~-~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i 211 (218)
T PRK13305 146 QQWGEADLAR----MKALS--------DIGLELSITGGITPADL-PLFKDIRVKAFIAGRALAGAANPAQVAADFHAQI 211 (218)
T ss_pred CCCCHHHHHH----HHHHh--------CCCCcEEEeCCcCcccc-ccccccCCCEEEECCcccCCCCHHHHHHHHHHHH
Confidence 3567777644 44432 23466788899999885 4667889999999998775 3 2 56655554
No 324
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=35.49 E-value=1.2e+02 Score=29.46 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=47.7
Q ss_pred HHHHHHHhccC--CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-cccHHHHh
Q 039862 66 EQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-GANCKELA 142 (173)
Q Consensus 66 ~Ql~~~l~~v~--~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~~~~ 142 (173)
+|+++.+.--. +..++++-.|=--|-| -=|-|+..+..-.--..+|+ -.|+-+..||++. ++.+..++
T Consensus 162 eqI~svi~IAka~P~~pIilq~egGraGG---HHSweDld~llL~tYs~lR~------~~NIvl~vGgGiGtp~~aa~YL 232 (717)
T COG4981 162 EQIRSVIRIAKANPTFPIILQWEGGRAGG---HHSWEDLDDLLLATYSELRS------RDNIVLCVGGGIGTPDDAAPYL 232 (717)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCccCC---ccchhhcccHHHHHHHHHhc------CCCEEEEecCCcCChhhccccc
Confidence 45555543211 3667888766533322 23455554333332333333 2578888988885 45566666
Q ss_pred cC--------C--CCCEEEeecccC
Q 039862 143 AQ--------P--DVDGFLVGGASL 157 (173)
Q Consensus 143 ~~--------~--~vDG~LiG~asl 157 (173)
.- | -+||+|+|.+.+
T Consensus 233 TGeWSt~~g~P~MP~DGiLvGtaaM 257 (717)
T COG4981 233 TGEWSTAYGFPPMPFDGILVGTAAM 257 (717)
T ss_pred ccchhhhcCCCCCCcceeEechhHH
Confidence 42 1 389999999877
No 325
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=35.36 E-value=46 Score=30.10 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=26.9
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.++||+..|+|..+...--+-..|.|++++|+..|
T Consensus 307 ~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 307 DRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 46899998888877643333347999999999877
No 326
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=35.08 E-value=60 Score=28.27 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=33.4
Q ss_pred cchhhcCCCEEEE-----cccccccccCCC-HHHHHHHHHHHHHCCCeEEEEeCC
Q 039862 2 EMLVNLSIPWVIL-----GHSERRALLNES-NDFVGDKVAYALSRGLKVIACVGE 50 (173)
Q Consensus 2 ~mLkd~G~~~vii-----GHSERR~~~~E~-~~~i~~Kv~~al~~gl~pIlCvGE 50 (173)
+++|++|++.|.+ -|..++--|.-+ +..+.+=++.|.++||-+|+..|-
T Consensus 31 ~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 31 QKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 3688999988776 576666656544 456778899999999999998764
No 327
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=34.98 E-value=51 Score=30.45 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=32.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 91 IGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 91 IGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
-|||++.+-..+. .. . ..|++-.|+++|+|+.+.. ...-+|+=|-
T Consensus 385 GGtG~~~DW~~l~-------~~---------~-~~p~iLAGGL~peNV~~ai-~~~P~gVDVs 429 (454)
T PRK09427 385 GGTGQTFDWSLLP-------GQ---------S-LDNVLLAGGLNPDNCQQAA-QLGCAGLDFN 429 (454)
T ss_pred CCCCCccChHHhh-------hc---------c-cCCEEEECCCCHHHHHHHH-hcCCCEEEeC
Confidence 4789987764332 11 1 3689999999999999887 4677777663
No 328
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.95 E-value=39 Score=30.18 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=35.1
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHH----HHHHCCCeEEEEeCCCHH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVA----YALSRGLKVIACVGETLE 53 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~----~al~~gl~pIlCvGE~~~ 53 (173)
.+|+|+|++++=+|-+.| -||.+-+.+-++ .|.++ .+.++|=|=...
T Consensus 94 ~~Lks~GitV~RigG~nR----~ETa~~v~~~~~~~yp~af~n-~kvvvv~GwDy~ 144 (337)
T COG2247 94 NALKSLGITVKRIGGANR----YETAEKVAKFFREDYPNAFKN-VKVVVVYGWDYA 144 (337)
T ss_pred HHHHhCCcEEEEecCcch----HHHHHHHHHHHHhhchhhhcC-eEEEEEeccccH
Confidence 589999999999999998 466655544443 45555 789999997654
No 329
>PRK15108 biotin synthase; Provisional
Probab=34.75 E-value=3.2e+02 Score=24.01 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=80.4
Q ss_pred cchhhcCCCEEEEccccccccc-----CCCHHHHHHHHHHHHHCCCeE----EEEeCCCHHHHhcCChHHHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILGHSERRALL-----NESNDFVGDKVAYALSRGLKV----IACVGETLEQRESGSTVAVVAEQTKAIA 72 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~-----~E~~~~i~~Kv~~al~~gl~p----IlCvGE~~~~r~~~~~~~~l~~Ql~~~l 72 (173)
+.||++|++.+-++.=-.+..| ..+-+..-+-++.|.+.|+.. |+=.||+.+++- +-+. .|
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v---------~~~~-~l 209 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRA---------GLLL-QL 209 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHH---------HHHH-HH
Confidence 4689999998755321133333 235555667788899999832 222478877642 1111 11
Q ss_pred hccCC-CCCeEEE-EcccccccCC---C-CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCC-CcccHHHHhcCC
Q 039862 73 EKISN-WDNVVLA-YEPVWAIGTG---K-VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV-NGANCKELAAQP 145 (173)
Q Consensus 73 ~~v~~-~~~iiIA-YEPvwAIGtG---~-~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV-~~~n~~~~~~~~ 145 (173)
..+.. ..-+-+. +=|+- ||- . +.++.+.-++++..|=.+- +...-+-||-+ .......++-..
T Consensus 210 ~~l~~~~~~ip~~~~~P~~--gTpl~~~~~~~~~e~lr~iAi~Rl~lp--------~~~i~i~~g~~~~~~~~~~~~l~~ 279 (345)
T PRK15108 210 ANLPTPPESVPINMLVKVK--GTPLADNDDVDAFDFIRTIAVARIMMP--------TSYVRLSAGREQMNEQTQAMCFMA 279 (345)
T ss_pred HhccCCCCEEEeCCccCCC--CCCCCCCCCCCHHHHHHHHHHHHHHCC--------CceeeecccHhHhChhhHHHHHHc
Confidence 11110 0011111 22322 442 2 2578888888888887652 21333445552 333446677778
Q ss_pred CCCEEEeecccCC-----h-HHHHHHHHHh
Q 039862 146 DVDGFLVGGASLK-----P-EFIDIIKSAT 169 (173)
Q Consensus 146 ~vDG~LiG~asl~-----~-~f~~Ii~~~~ 169 (173)
|+|++++|.-.|. . +-.++|+.+.
T Consensus 280 Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g 309 (345)
T PRK15108 280 GANSIFYGCKLLTTPNPEEDKDLQLFRKLG 309 (345)
T ss_pred CCcEEEECCccccCCCCCHHHHHHHHHHcC
Confidence 9999999995332 2 3667776553
No 330
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=34.62 E-value=3.8e+02 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=23.8
Q ss_pred cceEEEcCC-CCcccHHHHhcCCCCCEEEeecccC
Q 039862 124 STRIIYGGS-VNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 124 ~i~ilYGGS-V~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
++|++.-|+ -++..+..-+. .+.|++.+|++-.
T Consensus 344 ~v~vIadGGi~~~~di~kAla-~GA~~Vm~G~~~a 377 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALA-LGADCVMLGSLLA 377 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHH-cCCCEEEECchhc
Confidence 489999555 45555555554 8999999999643
No 331
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=34.40 E-value=2.3e+02 Score=25.54 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=28.6
Q ss_pred eEEEc---CCCCccc---HHHHhcCCCCCEEEeecccCC---hHHHHHHHHHhh
Q 039862 126 RIIYG---GSVNGAN---CKELAAQPDVDGFLVGGASLK---PEFIDIIKSATV 170 (173)
Q Consensus 126 ~ilYG---GSV~~~n---~~~~~~~~~vDG~LiG~asl~---~~f~~Ii~~~~~ 170 (173)
+.||| |++.++- ..+-+...+.||+-||| ++- +++.++++.+..
T Consensus 198 q~lfgiVQGG~~~dLR~~Sa~~l~~~~~~GyaIGG-~vge~~~~~~~il~~~~~ 250 (372)
T PRK01008 198 QSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG-SLGKNLQEMVEVVGVTTS 250 (372)
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-CCCCCHHHHHHHHHHHHh
Confidence 45665 6666654 22233446899999999 774 348888776543
No 332
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=34.08 E-value=29 Score=30.58 Aligned_cols=86 Identities=22% Similarity=0.187 Sum_probs=41.9
Q ss_pred EEEEeCCCHHHHhcCChHHHHHHHHHHHHhc-cCCCCCeEEEEcccccccCCCCC---------------CHHHHHHHHH
Q 039862 44 VIACVGETLEQRESGSTVAVVAEQTKAIAEK-ISNWDNVVLAYEPVWAIGTGKVA---------------TPAQAQEVHA 107 (173)
Q Consensus 44 pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~-v~~~~~iiIAYEPvwAIGtG~~a---------------~~e~i~~~~~ 107 (173)
.|+-+|-|- +| +..+.-+|..-+++ |-....+- -| +--.|||++|. +|.+.-.+.+
T Consensus 5 ~i~I~GPTA----sG--KT~lai~LAk~~~~eIIs~DSmQ-vY-r~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~ 76 (308)
T COG0324 5 LIVIAGPTA----SG--KTALAIALAKRLGGEIISLDSMQ-VY-RGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAE 76 (308)
T ss_pred EEEEECCCC----cC--HHHHHHHHHHHcCCcEEecchhh-hc-CCCcccCCCCCHHHHcCCCEEEecccCccccccHHH
Confidence 355566663 23 33345555555543 11122222 26 55789999872 1222223333
Q ss_pred HHHHHHHhccchhhcCcceEEEcCCCCccc
Q 039862 108 ELRKWLKDNVSAEVAASTRIIYGGSVNGAN 137 (173)
Q Consensus 108 ~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n 137 (173)
+.+........-.....+|||-||+.--=|
T Consensus 77 f~~~a~~~i~~i~~rgk~pIlVGGTglY~~ 106 (308)
T COG0324 77 FQRDALAAIDDILARGKLPILVGGTGLYLK 106 (308)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEccHHHHHH
Confidence 333333332221223469999999976544
No 333
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=34.08 E-value=1.4e+02 Score=22.58 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=32.6
Q ss_pred CCCEEEEcccccccc-cCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHh
Q 039862 8 SIPWVILGHSERRAL-LNESNDFVGDKVAYALSRGLKVIACVGETLEQRE 56 (173)
Q Consensus 8 G~~~viiGHSERR~~-~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~ 56 (173)
.++++|+.+. +..+ ..+-+..+.+.++.+.+.|...++|-|.+...+.
T Consensus 7 DiDGTL~~~~-~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 7 DLDNTITLTE-NGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred eCCCCcccCC-CCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 4567776553 2222 2444556667777777999999999999877654
No 334
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=33.95 E-value=33 Score=30.98 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=23.5
Q ss_pred ccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 16 HSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 16 HSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
|+|+- +..+...+++..|.+.|= .|+|||.|.
T Consensus 248 H~E~~----~I~~eta~~In~ak~~G~-RIiAVGTT~ 279 (366)
T PRK01424 248 HTEYC----SITPETAEIINKAKQEGR-RIIAVGTTT 279 (366)
T ss_pred cceEE----EECHHHHHHHHHHHHcCC-eEEEEecce
Confidence 55653 344556678899998885 699999985
No 335
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=33.86 E-value=81 Score=25.88 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHH---hcCCCCCEE
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKEL---AAQPDVDGF 150 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~---~~~~~vDG~ 150 (173)
.+.+.+.++++.+|+. +.+++|+.||....+...+- ...-+.||.
T Consensus 151 ~~~~~~~~~i~~L~~~---------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y 198 (213)
T cd02069 151 PSLDEMVEVAEEMNRR---------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVY 198 (213)
T ss_pred ccHHHHHHHHHHHHhc---------CCCCeEEEEChhcCHHHHhhhhccccCCCceE
Confidence 4566666666666543 34799999998776665432 244566664
No 336
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=33.82 E-value=8.5 Score=30.09 Aligned_cols=113 Identities=20% Similarity=0.315 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCHH---HHhcCChHHHHHHH---------HHHHHhccCCCCCeEEEEcccccccC
Q 039862 26 SNDFVGDKVAYALSRGLKVIACVGETLE---QRESGSTVAVVAEQ---------TKAIAEKISNWDNVVLAYEPVWAIGT 93 (173)
Q Consensus 26 ~~~~i~~Kv~~al~~gl~pIlCvGE~~~---~r~~~~~~~~l~~Q---------l~~~l~~v~~~~~iiIAYEPvwAIGt 93 (173)
+.+.+++++...+...+..|--....-. ... ........+ |......++.+..++|.| |+|+
T Consensus 12 nT~~vA~~Ia~~~gadi~eI~~~~~Y~~~~~~y~--~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~lG~-PvW~--- 85 (156)
T PF12682_consen 12 NTKKVAEKIAEKTGADIFEIEPVKPYPSDDLDYR--KCISRAKREIKDNNERPEIKPQIPDLSDYDTIFLGT-PVWW--- 85 (156)
T ss_dssp HHHHHHHHHHHCCT-EEEE-BBSTTSSTGGCSCC--HCCCHHHHHHTTTT----BC---S-GGG-SEEEEEE-EEET---
T ss_pred hHHHHHHHHHHHHCCCEEEEEeCCCCCcchhhHH--HHHHHHHHHHhcccccccccccccCcccCCEEEEec-hHHc---
Confidence 3456888888888777777654433221 000 000111111 222223334578899999 9995
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccchhhcCcc-eE-EEcCCCC---cccHHHHhcCCCC-CEEEeecc
Q 039862 94 GKVATPAQAQEVHAELRKWLKDNVSAEVAAST-RI-IYGGSVN---GANCKELAAQPDV-DGFLVGGA 155 (173)
Q Consensus 94 G~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i-~i-lYGGSV~---~~n~~~~~~~~~v-DG~LiG~a 155 (173)
|.+|.| +..++++. +.. +..+ ++ -+|||=. .++.++++....+ +|+.+.+.
T Consensus 86 ~~~~~p-----v~tFL~~~--~~~----gK~v~~F~T~ggs~~~~~~~~l~~~~~~a~i~~g~~~~~~ 142 (156)
T PF12682_consen 86 GTPPPP-----VRTFLEQY--DFS----GKTVIPFCTSGGSGFGNSLEDLKKLCPGATILEGLAINRG 142 (156)
T ss_dssp TEE-CH-----HHHHHHCT--TTT----TSEEEEEEE-SS--CHHHHHHHHHH-TTSEE---EE---S
T ss_pred CCCCHH-----HHHHHHhc--CCC----CCcEEEEEeeCCCChhHHHHHHHHHCCCCEeecCeEEeCC
Confidence 566544 34444432 111 2222 22 2366643 2344555544433 77777443
No 337
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=33.71 E-value=2.7e+02 Score=25.61 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=0.0
Q ss_pred CcchhhcCCCEEEE----cccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccC
Q 039862 1 AEMLVNLSIPWVIL----GHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS 76 (173)
Q Consensus 1 a~mLkd~G~~~vii----GHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~ 76 (173)
++.|.+.|++.+.+ ||++. +-..++...+.--...+.+|.- .+.+-...-++...+.
T Consensus 233 a~~L~~agvdvivvD~a~g~~~~----------vl~~i~~i~~~~p~~~vi~g~v-------~t~e~a~~l~~aGad~-- 293 (486)
T PRK05567 233 AEALVEAGVDVLVVDTAHGHSEG----------VLDRVREIKAKYPDVQIIAGNV-------ATAEAARALIEAGADA-- 293 (486)
T ss_pred HHHHHHhCCCEEEEECCCCcchh----------HHHHHHHHHhhCCCCCEEEecc-------CCHHHHHHHHHcCCCE--
Q ss_pred CCCCeEEEEcccccccCCC------CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEE
Q 039862 77 NWDNVVLAYEPVWAIGTGK------VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGF 150 (173)
Q Consensus 77 ~~~~iiIAYEPvwAIGtG~------~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~ 150 (173)
+.+.|=| ..|-++. .|+.+-+.++.+..++. ++||+--|+|...-..--+-..+.|.+
T Consensus 294 ----i~vg~g~-gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~-----------~~~viadGGi~~~~di~kAla~GA~~v 357 (486)
T PRK05567 294 ----VKVGIGP-GSICTTRIVAGVGVPQITAIADAAEAAKKY-----------GIPVIADGGIRYSGDIAKALAAGASAV 357 (486)
T ss_pred ----EEECCCC-CccccceeecCCCcCHHHHHHHHHHHhccC-----------CCeEEEcCCCCCHHHHHHHHHhCCCEE
Q ss_pred Eeecc
Q 039862 151 LVGGA 155 (173)
Q Consensus 151 LiG~a 155 (173)
++|++
T Consensus 358 ~~G~~ 362 (486)
T PRK05567 358 MLGSM 362 (486)
T ss_pred EECcc
No 338
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=33.61 E-value=87 Score=25.57 Aligned_cols=61 Identities=20% Similarity=0.356 Sum_probs=34.3
Q ss_pred CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhc--cchhh---cCcceEEEcCCCCcccHHHHhcCCCCC
Q 039862 77 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDN--VSAEV---AASTRIIYGGSVNGANCKELAAQPDVD 148 (173)
Q Consensus 77 ~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~--~~~~~---~~~i~ilYGGSV~~~n~~~~~~~~~vD 148 (173)
.+..+.|-|.|. ..+...+.+ .+++..... ..... --.+||.|||++-+ +..+++...++|
T Consensus 48 ~~~sllv~fdp~-------~~~~~~l~~---~l~~~~~~~~~~~~~~~~r~~~IPV~Y~~~~gp-DL~~vA~~~gLs 113 (201)
T smart00796 48 GYRSLLVHFDPL-------VIDPAALLA---RLRALEALPLAEALEVPGRIIEIPVCYGGEFGP-DLEFVARHNGLS 113 (201)
T ss_pred cceEEEEEEcCC-------CCCHHHHHH---HHHHHHhcccccccCCCCcEEEEeeEeCCCCCC-CHHHHHHHhCcC
Confidence 367788899994 223443333 333332211 01010 12489999999976 567777766665
No 339
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=33.27 E-value=34 Score=30.02 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=29.4
Q ss_pred cchhhcCCCEEEEccc-----ccc---cccCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 039862 2 EMLVNLSIPWVILGHS-----ERR---ALLNESNDFVGDKVAYALSRGLKVIACVGE 50 (173)
Q Consensus 2 ~mLkd~G~~~viiGHS-----ERR---~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE 50 (173)
++++++|++.|-+|.. |.+ -.|...|.. +..|.++||.+|+|+.-
T Consensus 17 ~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~----l~~a~~~Gi~viL~~~~ 69 (374)
T PF02449_consen 17 RLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRV----LDLAAKHGIKVILGTPT 69 (374)
T ss_dssp HHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHH----HHHHHCTT-EEEEEECT
T ss_pred HHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHH----HHHHHhccCeEEEEecc
Confidence 5789999999999863 332 244444444 78899999999999973
No 340
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=33.20 E-value=11 Score=18.24 Aligned_cols=7 Identities=57% Similarity=1.526 Sum_probs=4.8
Q ss_pred ccccccC
Q 039862 87 PVWAIGT 93 (173)
Q Consensus 87 PvwAIGt 93 (173)
|.||+|.
T Consensus 2 ~~WAvGh 8 (14)
T PF02044_consen 2 PQWAVGH 8 (14)
T ss_dssp -TCHHHC
T ss_pred Cccceee
Confidence 7899884
No 341
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=32.65 E-value=76 Score=27.32 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=62.7
Q ss_pred cccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEccccc--ccCCCC
Q 039862 19 RRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWA--IGTGKV 96 (173)
Q Consensus 19 RR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwA--IGtG~~ 96 (173)
-|.++-+.-+.+ +-.+...+.|+++.--+.+..- +-++|..+ . .-|-=| |+ ||||.=
T Consensus 109 ~~tLlPD~~etl-~Aae~Lv~eGF~VlPY~~dD~v----------~arrLee~----G-----caavMP-l~aPIGSg~G 167 (262)
T COG2022 109 EKTLLPDPIETL-KAAEQLVKEGFVVLPYTTDDPV----------LARRLEEA----G-----CAAVMP-LGAPIGSGLG 167 (262)
T ss_pred CcccCCChHHHH-HHHHHHHhCCCEEeeccCCCHH----------HHHHHHhc----C-----ceEecc-ccccccCCcC
Confidence 355666655554 4466777888888766655542 22333321 1 123334 54 899986
Q ss_pred -CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 97 -ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 97 -a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.+|..++ .|++. + ++||+.-.++..-......-+.++|+||+-.|--
T Consensus 168 ~~n~~~l~----iiie~---------a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 168 LQNPYNLE----IIIEE---------A-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred cCCHHHHH----HHHHh---------C-CCCEEEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 4455444 33332 2 6999998777665555555569999999977543
No 342
>PRK10878 hypothetical protein; Provisional
Probab=32.33 E-value=46 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=20.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHH
Q 039862 88 VWAIGTGKVATPAQAQEVHAELRKWL 113 (173)
Q Consensus 88 vwAIGtG~~a~~e~i~~~~~~Ir~~~ 113 (173)
-|..|.+.+++|+. +.+++.||+..
T Consensus 40 ~W~~g~~~p~d~~l-~~iV~~Ir~~~ 64 (72)
T PRK10878 40 NWLMNHGKPADAEL-ERMVRLIQTRN 64 (72)
T ss_pred HHHhCCCCCCCHHH-HHHHHHHHHhc
Confidence 49999999988876 67899999864
No 343
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=32.32 E-value=68 Score=28.59 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=28.8
Q ss_pred cCcceEEE-cCCCCcccHH---HHhcCCCC--CEEEeecccCCh
Q 039862 122 AASTRIIY-GGSVNGANCK---ELAAQPDV--DGFLVGGASLKP 159 (173)
Q Consensus 122 ~~~i~ilY-GGSV~~~n~~---~~~~~~~v--DG~LiG~asl~~ 159 (173)
+.++|.+| +++|+.+-.. +++...+. .|||.|||-|..
T Consensus 239 ~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~ 282 (325)
T TIGR01232 239 ATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSG 282 (325)
T ss_pred ccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEeehhhhHh
Confidence 34677666 9999988754 45556666 899999999974
No 344
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=32.30 E-value=2.6e+02 Score=25.04 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=21.2
Q ss_pred HhcCCCCCEEEeecccCC---hHHHHHHHHHh
Q 039862 141 LAAQPDVDGFLVGGASLK---PEFIDIIKSAT 169 (173)
Q Consensus 141 ~~~~~~vDG~LiG~asl~---~~f~~Ii~~~~ 169 (173)
-+...+.||+.|||.++- +++.+++..+.
T Consensus 198 ~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~ 229 (367)
T TIGR00449 198 GLAELDFDGYAIGGVSVGEPKRDMLRILEHVA 229 (367)
T ss_pred HHhhCCCCeEEEeCcccCCCHHHHHHHHHHHH
Confidence 334458999999998774 34888887654
No 345
>PRK12412 pyridoxal kinase; Reviewed
Probab=32.20 E-value=92 Score=25.94 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 60 TVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 60 ~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
..+.+..|++.++.++ |+=+|=+|...+++.++.+.+.+++.
T Consensus 56 ~~~~i~~q~~~l~~d~-----------~~~~ikiG~l~~~~~v~~i~~~~~~~ 97 (268)
T PRK12412 56 PASTLKPQLETTIEGV-----------GVDALKTGMLGSVEIIEMVAETIEKH 97 (268)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 5688899999988753 55666678778888888877777653
No 346
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=32.03 E-value=2.2e+02 Score=25.29 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHH----HhcCChHHHHHHHHHHHHhccCC----CCCeEEEEcccccccCCCC---
Q 039862 28 DFVGDKVAYALSRGLKVIACVGETLEQ----RESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKV--- 96 (173)
Q Consensus 28 ~~i~~Kv~~al~~gl~pIlCvGE~~~~----r~~~~~~~~l~~Ql~~~l~~v~~----~~~iiIAYEPvwAIGtG~~--- 96 (173)
+...+=...+.++||.||+ |++.. .+..+..++++..|...++.+.. +..+++ |.-.+=+|+-
T Consensus 158 ~~la~yAa~cq~aGlVPIV---EPEV~mdg~~d~~~~eeVtk~~L~k~~~~L~~~~vvm~g~~l---k~smv~~g~~~~~ 231 (332)
T COG3588 158 HQLAEYAALCQAAGLVPIV---EPEVDIDGDHDKARSEEVTKAELRKLLNALNEERVVMLGLIL---KTSMVISGKKSRE 231 (332)
T ss_pred HHHHHHHHHHHHCCCcccc---cceeeccCcccHHHHHHHHHHHHHHHHHHhhhhHhHhhcccc---cchhccccccccc
Confidence 3445556678899999996 33321 12234667888888888776652 344444 3333334443
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcce-EE--EcCCCCcccHHHHhcC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTR-II--YGGSVNGANCKELAAQ 144 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~-il--YGGSV~~~n~~~~~~~ 144 (173)
+||+.+.+ ..++..+... ..-+| |+ -||- +.+.+.+.++.
T Consensus 232 ~s~~~vae--~tl~~~~~tv-----P~~vpgIvfLSGG~-s~eeA~~~Lsa 274 (332)
T COG3588 232 ASPDEVAE--DTLYSLLSTV-----PAVVPGIVFLSGGY-SSEEANAHLSA 274 (332)
T ss_pred cchHHHHH--HHHHHHHhcC-----CcccceeEEecCCc-chHHHHHHHHh
Confidence 67887754 2333333221 33455 44 4554 55666666653
No 347
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=31.87 E-value=1.2e+02 Score=26.21 Aligned_cols=100 Identities=15% Similarity=0.276 Sum_probs=59.6
Q ss_pred CCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCC-CC--CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhc
Q 039862 40 RGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN-WD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDN 116 (173)
Q Consensus 40 ~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~-~~--~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~ 116 (173)
...+.++|=|..... .|....+..++. ++ -+-.-|-. |..-+|++.......+ +++.-++|++.
T Consensus 59 ~~~~lly~hGNa~Dl-----------gq~~~~~~~l~~~ln~nv~~~DYSG-yG~S~G~psE~n~y~D-i~avye~Lr~~ 125 (258)
T KOG1552|consen 59 AHPTLLYSHGNAADL-----------GQMVELFKELSIFLNCNVVSYDYSG-YGRSSGKPSERNLYAD-IKAVYEWLRNR 125 (258)
T ss_pred cceEEEEcCCcccch-----------HHHHHHHHHHhhcccceEEEEeccc-ccccCCCcccccchhh-HHHHHHHHHhh
Confidence 456777887873211 144444443322 22 23344544 6666787744322222 34444556666
Q ss_pred cchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecc
Q 039862 117 VSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGA 155 (173)
Q Consensus 117 ~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~a 155 (173)
|| ..+--+|||=|+...-..++++...++|+..=+.
T Consensus 126 ~g---~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SP 161 (258)
T KOG1552|consen 126 YG---SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSP 161 (258)
T ss_pred cC---CCceEEEEEecCCchhhhhHhhcCCcceEEEecc
Confidence 76 2345599999999988889999777888876543
No 348
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=31.79 E-value=43 Score=30.93 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=22.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHH
Q 039862 89 WAIGTGKVATPAQAQEVHAELRKWL 113 (173)
Q Consensus 89 wAIGtG~~a~~e~i~~~~~~Ir~~~ 113 (173)
-|||||.-++++++..+++.+++.-
T Consensus 231 TAiGTGiNa~~~Y~~~vv~~l~evt 255 (471)
T COG1027 231 TAIGTGINAPKGYIELVVKKLAEVT 255 (471)
T ss_pred eeeccCcCCChhHHHHHHHHHHHHh
Confidence 5899999999999999999888764
No 349
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=31.39 E-value=63 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=28.5
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
.++++.--|+|+++|+.++++.+ +..+-+|+.-.
T Consensus 152 ~~v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l~ 185 (211)
T COG0800 152 PQVRFCPTGGVSLDNAADYLAAG-VVAVGLGSWLV 185 (211)
T ss_pred CCCeEeecCCCCHHHHHHHHhCC-ceEEecCcccc
Confidence 35788889999999999999988 88887777544
No 350
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=31.34 E-value=96 Score=26.53 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=24.4
Q ss_pred CcceEEEcCCCCccc-HHHHhcC-CCCCEEEeecccC
Q 039862 123 ASTRIIYGGSVNGAN-CKELAAQ-PDVDGFLVGGASL 157 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n-~~~~~~~-~~vDG~LiG~asl 157 (173)
.++||++-|+|..-. ..++... .++.|+.+|+|-.
T Consensus 200 ~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 200 SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236 (253)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence 358999988887655 4444222 3688899998754
No 351
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=31.21 E-value=3.4e+02 Score=23.26 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHh--cCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHH
Q 039862 25 ESNDFVGDKVAYALSRGLKVIACVGETLEQRE--SGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQA 102 (173)
Q Consensus 25 E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~--~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i 102 (173)
.+...+.+.++.+.+.|+++++.+|-...... .....+.+.+.+...+.... +.-+-|-+|..-.- ..++++.
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g-~DGiDiD~E~~~~~----~~~~~~~ 131 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYG-FDGLDIDLESGSNP----LNATPVI 131 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhC-CCeEEEecccCCcc----CCcHHHH
Confidence 34566788889999999999999987432211 11223334444444443221 55677889975321 1225566
Q ss_pred HHHHHHHHHH
Q 039862 103 QEVHAELRKW 112 (173)
Q Consensus 103 ~~~~~~Ir~~ 112 (173)
....+++|+.
T Consensus 132 ~~~~~~lk~l 141 (312)
T cd02871 132 TNLISALKQL 141 (312)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 352
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=31.15 E-value=1.5e+02 Score=25.57 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=41.8
Q ss_pred CcchhhcCCCEEEEcccccccccCCCHHH-----------------------HHHHHHHHHHC--CC-----eEEEEeCC
Q 039862 1 AEMLVNLSIPWVILGHSERRALLNESNDF-----------------------VGDKVAYALSR--GL-----KVIACVGE 50 (173)
Q Consensus 1 a~mLkd~G~~~viiGHSERR~~~~E~~~~-----------------------i~~Kv~~al~~--gl-----~pIlCvGE 50 (173)
+++|.++|++.+.+|+.= .++.+.. .+..++.|++. |. ...+.+.+
T Consensus 29 a~~L~~~Gv~~IE~gfP~----~~~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~~~~~v~i~~~~Sd 104 (284)
T cd07942 29 FKLLVKIGFKEIEVGFPS----ASQTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGAKKAIVHLYNATSP 104 (284)
T ss_pred HHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCCCCCEEEEEEcCCH
Confidence 357899999999998741 1111100 11126777776 44 23444555
Q ss_pred CHHHHhcCChHHHHHHHHHHHHh
Q 039862 51 TLEQRESGSTVAVVAEQTKAIAE 73 (173)
Q Consensus 51 ~~~~r~~~~~~~~l~~Ql~~~l~ 73 (173)
....++-+.+.+...+++..++.
T Consensus 105 ~h~~~~~~~s~~e~~~~~~~~v~ 127 (284)
T cd07942 105 LQRRVVFGKSKEEIIEIAVDGAK 127 (284)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 55566667788777777777665
No 353
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.98 E-value=1.3e+02 Score=24.76 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=32.3
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC-Ch------HHHHHHHHHh
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KP------EFIDIIKSAT 169 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl-~~------~f~~Ii~~~~ 169 (173)
.++|++==|+|+++|+.++++..++ +.+||..| +. +|..|-+.+.
T Consensus 143 p~~~l~ptGGV~~~n~~~~l~ag~~--~~~ggs~l~~~~~~~~~~~~~i~~~a~ 194 (201)
T PRK06015 143 AGTFFCPTGGISLKNARDYLSLPNV--VCVGGSWVAPKELVAAGDWAGITKLAA 194 (201)
T ss_pred CCCcEEecCCCCHHHHHHHHhCCCe--EEEEchhhCCchhhhcccHHHHHHHHH
Confidence 4699999999999999999998777 33444444 22 3666665544
No 354
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=30.82 E-value=71 Score=28.92 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=29.1
Q ss_pred cCcceEEEc-CCCCcccHHHHhcCCCCCEEEe---ecccCC
Q 039862 122 AASTRIIYG-GSVNGANCKELAAQPDVDGFLV---GGASLK 158 (173)
Q Consensus 122 ~~~i~ilYG-GSV~~~n~~~~~~~~~vDG~Li---G~asl~ 158 (173)
-..++|||+ .+.+++-++.++. +.++|+.+ |..++.
T Consensus 252 ~p~V~ILy~~~g~s~sli~a~~~-~~~kGlVL~s~Gag~~~ 291 (368)
T KOG0503|consen 252 LPEVPILYIYQGLSPSLIQAALK-LPAKGLVLASSGAGSWP 291 (368)
T ss_pred CCceeEEEecCCCCHHHHHHhhc-ccCceEEEEeccCCCCC
Confidence 457999999 9999998887776 89999988 445554
No 355
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=30.76 E-value=47 Score=22.60 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=27.8
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
+.|.+.||+.+++|+=-.+ - .....+.|+.++.+.+.+.
T Consensus 47 ~~l~~~~v~~li~~~iG~~------~------~~~L~~~gI~v~~~~~~~i 85 (94)
T PF02579_consen 47 KFLAEEGVDVLICGGIGEG------A------FRALKEAGIKVYQGAGGDI 85 (94)
T ss_dssp HHHHHTTESEEEESCSCHH------H------HHHHHHTTSEEEESTSSBH
T ss_pred HHHHHcCCCEEEEeCCCHH------H------HHHHHHCCCEEEEcCCCCH
Confidence 3567789999999885332 1 4667778999998855554
No 356
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.74 E-value=4.1e+02 Score=24.09 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=62.5
Q ss_pred cchhhcCCCEEEEc----cccccccc--CCCHHHHHHHHHHHHHCCCeEE-EE--eCCCHHHHhcCChHHHHHHHHHHHH
Q 039862 2 EMLVNLSIPWVILG----HSERRALL--NESNDFVGDKVAYALSRGLKVI-AC--VGETLEQRESGSTVAVVAEQTKAIA 72 (173)
Q Consensus 2 ~mLkd~G~~~viiG----HSERR~~~--~E~~~~i~~Kv~~al~~gl~pI-lC--vGE~~~~r~~~~~~~~l~~Ql~~~l 72 (173)
+.|+++|++.+-+| +.+-++.+ .-+.+.+.+-++.+.+.|+..| +. .|=+ ++|.+-+.+-++.++
T Consensus 156 ~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP------gqt~e~~~~tl~~~~ 229 (453)
T PRK13347 156 QALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP------HQTVESFRETLDKVI 229 (453)
T ss_pred HHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC------CCCHHHHHHHHHHHH
Confidence 47899999999999 33322222 1355667788999999998632 22 2322 234444555555544
Q ss_pred hccCCCCCeEEEE----cccc------cccCCCCCCHHHHHHHHHHHHHHHHhc
Q 039862 73 EKISNWDNVVLAY----EPVW------AIGTGKVATPAQAQEVHAELRKWLKDN 116 (173)
Q Consensus 73 ~~v~~~~~iiIAY----EPvw------AIGtG~~a~~e~i~~~~~~Ir~~~~~~ 116 (173)
. +. ... +-.| .| | .||....|++++..++.+.+.+.+.+.
T Consensus 230 ~-l~-p~~-i~~y~l~~~p-~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~ 279 (453)
T PRK13347 230 A-LS-PDR-IAVFGYAHVP-SRRKNQRLIDEAALPDAEERLRQARAVADRLLAA 279 (453)
T ss_pred h-cC-CCE-EEEecccccc-chhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHC
Confidence 3 11 112 1122 23 3 356666688888888888888888653
No 357
>COG4843 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.49 E-value=53 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=14.8
Q ss_pred HHHHHHhccCCCCCeEEEEccccccc
Q 039862 67 QTKAIAEKISNWDNVVLAYEPVWAIG 92 (173)
Q Consensus 67 Ql~~~l~~v~~~~~iiIAYEPvwAIG 92 (173)
||-.-++.++ -+..+|||||.-.-|
T Consensus 141 kLy~tIk~lD-~kAFIia~EPk~ihG 165 (179)
T COG4843 141 KLYDTIKELD-PKAFIIAYEPKTIHG 165 (179)
T ss_pred HHHHHHHhcC-CCcEEEEcCCcceec
Confidence 3333334444 466899999974433
No 358
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=30.48 E-value=1.2e+02 Score=27.26 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
.+.+-++++.||+. + .+..|+-|-=++++.+.+++. .++||+.||
T Consensus 134 s~~~i~~ik~ir~~----~-----p~~~viaGNV~T~e~a~~Li~-aGAD~ikVg 178 (343)
T TIGR01305 134 SEHFVEFVKLVREA----F-----PEHTIMAGNVVTGEMVEELIL-SGADIVKVG 178 (343)
T ss_pred HHHHHHHHHHHHhh----C-----CCCeEEEecccCHHHHHHHHH-cCCCEEEEc
Confidence 34444556666653 3 246677777888888887776 899999998
No 359
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=30.45 E-value=2e+02 Score=23.77 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=50.7
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 78 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
....+|+.=|+|-.-|-.-+.|.-+.. .+.+++. .++|++-=|+++++|+.+++. .++||+-|-++-+
T Consensus 123 ~g~DYv~~GpifpT~tK~~~~~~G~~~-l~~~~~~----------~~iP~vAIGGi~~~nv~~v~~-~Ga~gVAvvsai~ 190 (211)
T COG0352 123 LGADYVGLGPIFPTSTKPDAPPLGLEG-LREIREL----------VNIPVVAIGGINLENVPEVLE-AGADGVAVVSAIT 190 (211)
T ss_pred cCCCEEEECCcCCCCCCCCCCccCHHH-HHHHHHh----------CCCCEEEEcCCCHHHHHHHHH-hCCCeEEehhHhh
Confidence 346799999999877766554433332 3344432 248988889999999998887 8999999998877
Q ss_pred C
Q 039862 158 K 158 (173)
Q Consensus 158 ~ 158 (173)
.
T Consensus 191 ~ 191 (211)
T COG0352 191 S 191 (211)
T ss_pred c
Confidence 4
No 360
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.20 E-value=2.1e+02 Score=22.49 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=33.8
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC--hHHHHHHHHHhh
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK--PEFIDIIKSATV 170 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~--~~f~~Ii~~~~~ 170 (173)
.+.++|+|.+ +|+++...+-+.++|.+.|-+-+-. ..|..+++.+.+
T Consensus 40 GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 40 GFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHH
Confidence 4779997776 4567888888899999888664433 237777777654
No 361
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=30.13 E-value=2.8e+02 Score=22.04 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=64.7
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCe
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV 81 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~i 81 (173)
+++.++|++++.+ |.|- + .+.+..=++.+.+.|+.+.+=+.-+ . .+ ..+.+..+++.++.
T Consensus 74 ~~~~~~gad~vtv-h~e~----g--~~~l~~~i~~~~~~g~~~~v~~~~~-~-~~---~~~~~~~~~~~v~~-------- 133 (215)
T PRK13813 74 EAVFEAGAWGIIV-HGFT----G--RDSLKAVVEAAAESGGKVFVVVEMS-H-PG---ALEFIQPHADKLAK-------- 133 (215)
T ss_pred HHHHhCCCCEEEE-cCcC----C--HHHHHHHHHHHHhcCCeEEEEEeCC-C-CC---CCCCHHHHHHHHHH--------
Confidence 4566788888765 6652 1 2334445677778898886533211 1 00 11111233333322
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcc--cHHHHhcCCCCCEEEeecccCC-
Q 039862 82 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGA--NCKELAAQPDVDGFLVGGASLK- 158 (173)
Q Consensus 82 iIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~--n~~~~~~~~~vDG~LiG~asl~- 158 (173)
++.||-. .|....+....+ ++.+|+.. ..++.++-| +|+++ |+.+++. .+.|++.+||+-++
T Consensus 134 -m~~e~G~---~g~~~~~~~~~~-i~~l~~~~--------~~~~~ivdg-GI~~~g~~~~~~~~-aGad~iV~Gr~I~~~ 198 (215)
T PRK13813 134 -LAQEAGA---FGVVAPATRPER-VRYIRSRL--------GDELKIISP-GIGAQGGKAADAIK-AGADYVIVGRSIYNA 198 (215)
T ss_pred -HHHHhCC---CeEEECCCcchh-HHHHHHhc--------CCCcEEEeC-CcCCCCCCHHHHHH-cCCCEEEECcccCCC
Confidence 1223311 122222211222 23344432 123455444 77776 5777776 89999999998765
Q ss_pred hHHHHHHHH
Q 039862 159 PEFIDIIKS 167 (173)
Q Consensus 159 ~~f~~Ii~~ 167 (173)
++..+.++.
T Consensus 199 ~d~~~~~~~ 207 (215)
T PRK13813 199 ADPREAAKA 207 (215)
T ss_pred CCHHHHHHH
Confidence 234443333
No 362
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.73 E-value=3e+02 Score=22.24 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.3
Q ss_pred cchhhcCCCEEEEcccccc
Q 039862 2 EMLVNLSIPWVILGHSERR 20 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR 20 (173)
+.|.++|++++.+|+.+.-
T Consensus 26 ~~L~~~GV~~IEvg~~~~~ 44 (265)
T cd03174 26 EALDEAGVDSIEVGSGASP 44 (265)
T ss_pred HHHHHcCCCEEEeccCcCc
Confidence 4688999999999998864
No 363
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=29.70 E-value=76 Score=25.68 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=25.5
Q ss_pred cCCCCcccHHHHhcCCCCCEEEe-ecccCChHHH
Q 039862 130 GGSVNGANCKELAAQPDVDGFLV-GGASLKPEFI 162 (173)
Q Consensus 130 GGSV~~~n~~~~~~~~~vDG~Li-G~asl~~~f~ 162 (173)
.+.++...+-+.+.+.++.-+|| ||+.|-.+|+
T Consensus 120 ~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~fl 153 (210)
T TIGR01508 120 EGRVDLKKLLDILYDKGVRRLMVEGGGTLIWSLF 153 (210)
T ss_pred CCCcCHHHHHHHHHHCCCCEEEEeeCHHHHHHHH
Confidence 34577777777777889999999 8888877765
No 364
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=29.55 E-value=90 Score=29.72 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=30.8
Q ss_pred ceEEEcCCCCccc--HHHHhcCCCCCEEEeecccC-ChH-HHHHHH
Q 039862 125 TRIIYGGSVNGAN--CKELAAQPDVDGFLVGGASL-KPE-FIDIIK 166 (173)
Q Consensus 125 i~ilYGGSV~~~n--~~~~~~~~~vDG~LiG~asl-~~~-f~~Ii~ 166 (173)
+|++=-|-|..=. ...+...++||+++||+.+| +|= |.+|=+
T Consensus 455 l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIke 500 (614)
T KOG2333|consen 455 LPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKE 500 (614)
T ss_pred ceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhh
Confidence 7888777776533 35555677899999999887 675 877743
No 365
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=29.50 E-value=2.9e+02 Score=21.95 Aligned_cols=110 Identities=15% Similarity=-0.000 Sum_probs=61.9
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEE----EEeCCCHHHHhcCChHHHHHHHHHHHHhccCC-
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVI----ACVGETLEQRESGSTVAVVAEQTKAIAEKISN- 77 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pI----lCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~- 77 (173)
.+|..|+++|++==+|--.+ .|.....-++.|.++||.+= .|.+.+... .|.+..++.+..
T Consensus 17 ~vk~~g~~fviiKateG~~~---~D~~~~~n~~~A~~aGl~~G~Yhf~~~~~~~a~-----------~qA~~fi~~~~~~ 82 (199)
T cd06412 17 GAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIRGAYHFALPDQSSGA-----------AQADYFLDHGGGW 82 (199)
T ss_pred HHHhCCCeEEEEEEecCCCc---cChhHHHHHHHHHHcCCceEEEEEeecCCCCHH-----------HHHHHHHHHcccc
Confidence 57889999999988876433 46667888999999999543 454432221 344444443321
Q ss_pred -----CCCeEEEEcccccccCCCCCCHHHHHHH-HHHHHHHHHhccchhhcCcceEEEcCC
Q 039862 78 -----WDNVVLAYEPVWAIGTGKVATPAQAQEV-HAELRKWLKDNVSAEVAASTRIIYGGS 132 (173)
Q Consensus 78 -----~~~iiIAYEPvwAIGtG~~a~~e~i~~~-~~~Ir~~~~~~~~~~~~~~i~ilYGGS 132 (173)
.-++++-+|..--.++....+..++... .++++. +++.. ...|+||-+.
T Consensus 83 ~~~~~~lp~~lD~E~~~~~~~~~~~~~~~~~~~~~~f~~~-v~~~~-----G~~~~iY~~~ 137 (199)
T cd06412 83 SPDGRTLPGVLDLEYNPYGATCYGLSPAQMVSWIKDFSDT-YKART-----GRDPVIYTTT 137 (199)
T ss_pred cCCCCCCCeEEEEecCCCCCccCCCCHHHHHHHHHHHHHH-HHHHH-----CCCcEEEecH
Confidence 2346778886332222222445554333 333332 33322 2467899654
No 366
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=29.34 E-value=98 Score=26.71 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 59 STVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 59 ~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
-..+++..||+.++..+ |+-|+=+|.-+++|.|+-+.+.++++
T Consensus 55 v~~~~v~~Ql~av~~D~-----------~v~avKtGML~~~eiie~va~~l~~~ 97 (263)
T COG0351 55 VPPEFVEAQLDAVFSDI-----------PVDAVKTGMLGSAEIIEVVAEKLKKY 97 (263)
T ss_pred CCHHHHHHHHHHHhhcC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 46799999999998753 45677788888998888888887775
No 367
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.30 E-value=89 Score=25.06 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEE
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 151 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~L 151 (173)
+.+.+.+.++++.+|+. .. ..+++|+.||..-.. ++....+.|+.-
T Consensus 144 ~~~~~~~~~~i~~lr~~----~~---~~~~~i~vGG~~~~~---~~~~~~GaD~~~ 189 (201)
T cd02070 144 TTTMGGMKEVIEALKEA----GL---RDKVKVMVGGAPVNQ---EFADEIGADGYA 189 (201)
T ss_pred cccHHHHHHHHHHHHHC----CC---CcCCeEEEECCcCCH---HHHHHcCCcEEE
Confidence 34566677777777664 10 237999999976554 356666778753
No 368
>PHA00432 internal virion protein A
Probab=29.29 E-value=29 Score=27.14 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=18.4
Q ss_pred ccccccCCCC--CCHHHHHHHHHHHHHHH
Q 039862 87 PVWAIGTGKV--ATPAQAQEVHAELRKWL 113 (173)
Q Consensus 87 PvwAIGtG~~--a~~e~i~~~~~~Ir~~~ 113 (173)
|+|.+||... .++.+-.+..+.++.++
T Consensus 58 ~vW~v~T~~v~~~~~~~~reF~k~~~~~l 86 (137)
T PHA00432 58 QVWFVTSDQVWRLTKKEKREFRKLIMEYR 86 (137)
T ss_pred ceEEEecHHhhhCChhhhHHHHHHHHHHH
Confidence 8899999887 44555555666666554
No 369
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=29.14 E-value=1.8e+02 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=34.2
Q ss_pred cceEEE-cCCCCcccHHHHhcCCCCCEEEeecccCC--hH-HHHHHHHH
Q 039862 124 STRIIY-GGSVNGANCKELAAQPDVDGFLVGGASLK--PE-FIDIIKSA 168 (173)
Q Consensus 124 ~i~ilY-GGSV~~~n~~~~~~~~~vDG~LiG~asl~--~~-f~~Ii~~~ 168 (173)
++||+= ||=.+.+.+.+++. .|.|+|.||++.+. +. +.+|.+.+
T Consensus 253 ~ipIig~GGI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 253 GLPISGIGGIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred CCCEEeecCcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHHHHHH
Confidence 588986 55556666888886 99999999999886 55 77777665
No 370
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=29.00 E-value=3.6e+02 Score=22.91 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=62.9
Q ss_pred hhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEE
Q 039862 5 VNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLA 84 (173)
Q Consensus 5 kd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIA 84 (173)
+.+|++.|++=-+ .+ +++.+..=+..|.+.||.|++=|=+..| ++.++. ...-+|.
T Consensus 121 ~~~GADavLLI~~----~L--~~~~l~~l~~~a~~lGle~LVEVh~~~E--------------l~~a~~----~ga~iiG 176 (247)
T PRK13957 121 RAFGASAILLIVR----IL--TPSQIKSFLKHASSLGMDVLVEVHTEDE--------------AKLALD----CGAEIIG 176 (247)
T ss_pred HHcCCCEEEeEHh----hC--CHHHHHHHHHHHHHcCCceEEEECCHHH--------------HHHHHh----CCCCEEE
Confidence 4567777765432 11 2335666689999999999998876433 333443 2233454
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-cccHHHHhcCCCCCEEEeecccCC
Q 039862 85 YEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-GANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 85 YEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.=. |=.-|-. .+++...+ +...+ . ....++--++++ ++.+..+.. . +||+|||.+-++
T Consensus 177 INn-RdL~t~~-vd~~~~~~----L~~~i----p----~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~ 235 (247)
T PRK13957 177 INT-RDLDTFQ-IHQNLVEE----VAAFL----P----PNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFME 235 (247)
T ss_pred EeC-CCCccce-ECHHHHHH----HHhhC----C----CCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhC
Confidence 432 2222222 23443333 22222 1 223445545555 455666554 4 999999998876
No 371
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=28.99 E-value=3.9e+02 Score=23.27 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=25.4
Q ss_pred cceEEEcCCCC-cccHHHHhcCCCCCEEEeecccC
Q 039862 124 STRIIYGGSVN-GANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 124 ~i~ilYGGSV~-~~n~~~~~~~~~vDG~LiG~asl 157 (173)
++||+--|++. +..+...+. .+.||+.+|++-+
T Consensus 197 ~vpVIA~GGI~~~~di~kAla-~GA~~VmiGt~fa 230 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALA-AGADAVMLGSLLA 230 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHH-cCCCEEEecchhc
Confidence 58999866665 577777776 8999999998643
No 372
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=28.93 E-value=71 Score=27.30 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=25.9
Q ss_pred cceEEEcCCC-CcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIYGGSV-NGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilYGGSV-~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
++||+--|+| ++..+.+.+. .+.||+.||+..+.
T Consensus 227 ~ipvia~GGI~~~~d~~kal~-lGAd~V~ig~~~l~ 261 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKALA-LGADAVLIGRPFLY 261 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 5888886666 5566677775 89999999997663
No 373
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.84 E-value=2.5e+02 Score=22.98 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHH-HHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHH
Q 039862 28 DFVGDKVAYALSRGLKVIACVGETLE-QRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVH 106 (173)
Q Consensus 28 ~~i~~Kv~~al~~gl~pIlCvGE~~~-~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~ 106 (173)
+.+.+=++.|...|...|.+.|-+.- ........+.+.+.++.+.+.. ....+.|+|||.. +....++++...++
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~l~lE~~~---~~~~~~~~~~~~l~ 169 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQA-AAAQVMLAVEIMD---TPFMNSISKWKKWD 169 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEecC---ccccCCHHHHHHHH
Confidence 34556677889999988876543210 0001112233334444443321 1346899999952 22234555555444
Q ss_pred HH
Q 039862 107 AE 108 (173)
Q Consensus 107 ~~ 108 (173)
+.
T Consensus 170 ~~ 171 (284)
T PRK13210 170 KE 171 (284)
T ss_pred HH
Confidence 33
No 374
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=28.78 E-value=97 Score=28.69 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCC-CCEEEeecccCC
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD-VDGFLVGGASLK 158 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~-vDG~LiG~asl~ 158 (173)
.+.-+.......+|+.+.+. | -++++|+++|+++.+-+.++..+.. +|++-||..-++
T Consensus 263 lDSGDl~~l~~~vr~~ld~~-G---~~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~ 321 (464)
T PRK09243 263 IDSGDLAYLSKKVRKMLDEA-G---FTDTKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVT 321 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHC-C---CCCcEEEEeCCCCHHHHHHHHhCCCCceEEEcCccccC
Confidence 33334455566666666554 4 3579999999999999999875433 899999986443
No 375
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=28.44 E-value=1.7e+02 Score=24.49 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=38.2
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh
Q 039862 91 IGTGKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 91 IGtG~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
.| |.| ..++.+.++.+.+|+. +-.+.+..-|....+...+++. .+|.+++.--+.++
T Consensus 132 sG-GEPll~~~~l~~l~~~~k~~---------g~~~~i~TnG~~~~~~~~~ll~--~~d~~~isl~~~~~ 189 (295)
T TIGR02494 132 SG-GEPLLQPEFALALLQACHER---------GIHTAVETSGFTPWETIEKVLP--YVDLFLFDIKHLDD 189 (295)
T ss_pred eC-cchhchHHHHHHHHHHHHHc---------CCcEeeeCCCCCCHHHHHHHHh--hCCEEEEeeccCCh
Confidence 35 777 5677777777777653 2346788889887766777763 57877775444444
No 376
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=28.24 E-value=99 Score=31.41 Aligned_cols=101 Identities=24% Similarity=0.265 Sum_probs=53.5
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 039862 32 DKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 111 (173)
Q Consensus 32 ~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~ 111 (173)
+++--|+..+..+|+| |||- +|+|- |+=+.|..-.-.++- .+-.-.||--.|=... +-.|.+.+-.
T Consensus 262 q~IMEaIn~n~vvIIc-GeTG----sGKTT-----QvPQFLYEAGf~s~~---~~~~gmIGITqPRRVA-aiamAkRVa~ 327 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIIC-GETG----SGKTT-----QVPQFLYEAGFASEQ---SSSPGMIGITQPRRVA-AIAMAKRVAF 327 (1172)
T ss_pred HHHHHHhhcCCeEEEe-cCCC----CCccc-----cchHHHHHcccCCcc---CCCCCeeeecCchHHH-HHHHHHHHHH
Confidence 4577889999999998 8884 34443 333333211100110 0112234333321111 1223333333
Q ss_pred HHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 112 WLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 112 ~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
-|.. +++++ ++.|=|-|-++++....++- ||+|+=
T Consensus 328 EL~~-~~~eV--sYqIRfd~ti~e~T~IkFMT----DGVLLr 362 (1172)
T KOG0926|consen 328 ELGV-LGSEV--SYQIRFDGTIGEDTSIKFMT----DGVLLR 362 (1172)
T ss_pred Hhcc-Cccce--eEEEEeccccCCCceeEEec----chHHHH
Confidence 3443 45555 47788999999987666664 888763
No 377
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.19 E-value=37 Score=31.53 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCC---cccHHHHhcCCCCCEEEeecccCC
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVN---GANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~---~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.++++++++++.+.. .++||+- |||-. -......-...+.||++|.+++..
T Consensus 193 ~~~~~~~i~~i~~~~-------------~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 193 EPATKDYIREIAQAC-------------QMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred CCCCHHHHHHHHHHh-------------ccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 347777777766553 3488877 77766 333455555678999999887653
No 378
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=27.89 E-value=66 Score=28.96 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=26.1
Q ss_pred CcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccCC
Q 039862 123 ASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl~ 158 (173)
.+++|+.-|+|.... +...+. .+.|+++||+..|.
T Consensus 282 ~~i~vi~dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 282 KRVPIVFDSGVRRGQHVFKALA-SGADLVALGRPVIY 317 (367)
T ss_pred CCCcEEeeCCcCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 458888877776655 444444 89999999998654
No 379
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=27.85 E-value=1.1e+02 Score=22.44 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=46.9
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 039862 32 DKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 111 (173)
Q Consensus 32 ~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~ 111 (173)
+|..+++.+.|.|++=||.. |-|.. +..|++..|..=. +=++= ++- -++++..++.+.|-+
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~------Glt~~-vi~ei~~aL~~hE-LIKvk------v~~-----~~~~~~~e~~~~i~~ 68 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSN------GLTEG-VLAEIEQALEHHE-LIKVK------IAT-----EDRETKTLIVEAIVR 68 (97)
T ss_pred HHHHHHhcCCCCCeEEECCC------CCCHH-HHHHHHHHHHHCC-cEEEE------ecC-----CChhHHHHHHHHHHH
Confidence 67889999999999999974 45554 4577777776311 11221 221 145666666666655
Q ss_pred HHHhccchhhcCcceEEEcCC
Q 039862 112 WLKDNVSAEVAASTRIIYGGS 132 (173)
Q Consensus 112 ~~~~~~~~~~~~~i~ilYGGS 132 (173)
.....+=+.. ..+-+||==+
T Consensus 69 ~~~ae~Vq~I-G~~~vlYR~~ 88 (97)
T PRK10343 69 ETGACNVQVI-GKTLVLYRPT 88 (97)
T ss_pred HHCCEEEeee-CcEEEEEecC
Confidence 5433321111 2345777543
No 380
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.68 E-value=3.6e+02 Score=22.42 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred CeEEEEcccccc-------------------cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEc-CCCCcccHH
Q 039862 80 NVVLAYEPVWAI-------------------GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYG-GSVNGANCK 139 (173)
Q Consensus 80 ~iiIAYEPvwAI-------------------GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYG-GSV~~~n~~ 139 (173)
+-++.|.|.|.= .++..+++.++.++.+.||+. ++++++- =..+++.++
T Consensus 154 ~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~-----------~v~~if~e~~~~~k~~~ 222 (264)
T cd01020 154 APVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNR-----------QIDALIVNPQQASSATT 222 (264)
T ss_pred CeEEEeCchHHHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhC-----------CCCEEEeCCCCCcHHHH
Confidence 447789988721 247789999999999988863 4676654 444545444
Q ss_pred ---HHhcCCCCCEEEeec-ccCChHHHHHHHH
Q 039862 140 ---ELAAQPDVDGFLVGG-ASLKPEFIDIIKS 167 (173)
Q Consensus 140 ---~~~~~~~vDG~LiG~-asl~~~f~~Ii~~ 167 (173)
.++...++.=+.++. ......|.++++.
T Consensus 223 ~l~~la~~~~~~v~~l~~~~~~~~~y~~~m~~ 254 (264)
T cd01020 223 NITGLAKRSGVPVVEVTETMPNGTTYLTWMLK 254 (264)
T ss_pred HHHHHHHHcCCCEEeecCCCCCCCCHHHHHHH
Confidence 345666765555532 2212236665554
No 381
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=27.56 E-value=1.5e+02 Score=27.12 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhc--CCCCCE--EEeecccCChHHHHHHHHHhh
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAA--QPDVDG--FLVGGASLKPEFIDIIKSATV 170 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~--~~~vDG--~LiG~asl~~~f~~Ii~~~~~ 170 (173)
.+|+...++++.+-+ +-++|++-+||=|++-..+.+. ...+.| .||++|.++..|.++...+.+
T Consensus 171 ~~~~e~a~~vk~V~~----------av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~ 238 (389)
T TIGR00381 171 KSPSEAAKVLEDVLQ----------AVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKK 238 (389)
T ss_pred cCHHHHHHHHHHHHH----------hCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHH
Confidence 567777766666533 3468999988865554444433 345677 899999998677777666543
No 382
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=27.47 E-value=3.9e+02 Score=22.85 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHHHHhccCCCCCeEEEEccc---------------ccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEE-Ec
Q 039862 67 QTKAIAEKISNWDNVVLAYEPV---------------WAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRII-YG 130 (173)
Q Consensus 67 Ql~~~l~~v~~~~~iiIAYEPv---------------wAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il-YG 130 (173)
.....+..+.. ++.+|.++|. |-+.+...+||.+++++.+.|++. +++.+ +=
T Consensus 181 ~~~~~~~~~~~-~r~~vt~h~af~Y~~~~~g~~~~~i~~~~~~~e~s~~~l~~l~~~ik~~-----------~i~~If~e 248 (303)
T COG0803 181 EAKAKLSKIPA-QRDVVTSHGAFGYLARDYGLKQVAIAGISPEAEPSPKDLAKLVDLIKKK-----------NIKAIFVE 248 (303)
T ss_pred HHHHHHhcCCc-CcEEEeecchHHHHHhccCCccccccCcCcccCCCHHHHHHHHHHHHHc-----------CCCEEEEe
Confidence 33444444443 5677777654 444556669999999999999874 35544 46
Q ss_pred CCCCcccHHHHhcCCC
Q 039862 131 GSVNGANCKELAAQPD 146 (173)
Q Consensus 131 GSV~~~n~~~~~~~~~ 146 (173)
.+++.+-++.+.+..+
T Consensus 249 ~~~~~~~~~~la~e~g 264 (303)
T COG0803 249 SNVSSKSAETLAKETG 264 (303)
T ss_pred CCCChHHHHHHHHHhC
Confidence 7777777888888766
No 383
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.45 E-value=1.6e+02 Score=26.08 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 98 TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 98 ~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
..+.++++++.||+. | .+++|+-|-=.+.+.+..+. ..++|++.||
T Consensus 123 h~~~~~e~I~~ir~~----~-----p~~~vi~g~V~t~e~a~~l~-~aGad~i~vg 168 (326)
T PRK05458 123 HSDSVINMIQHIKKH----L-----PETFVIAGNVGTPEAVRELE-NAGADATKVG 168 (326)
T ss_pred chHHHHHHHHHHHhh----C-----CCCeEEEEecCCHHHHHHHH-HcCcCEEEEC
Confidence 356666666666654 2 34667766555666655555 5899999987
No 384
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.45 E-value=1.4e+02 Score=26.91 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
.+.+-++++.||+. | .++.|+-|-=++++-+.+|+. .+.|++-||
T Consensus 135 s~~~i~~ik~ik~~----~-----P~~~vIaGNV~T~e~a~~Li~-aGAD~vKVG 179 (346)
T PRK05096 135 SEHFVQFVAKAREA----W-----PDKTICAGNVVTGEMVEELIL-SGADIVKVG 179 (346)
T ss_pred HHHHHHHHHHHHHh----C-----CCCcEEEecccCHHHHHHHHH-cCCCEEEEc
Confidence 34445556666654 3 357788888888888777776 899999874
No 385
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=27.42 E-value=2.2e+02 Score=25.32 Aligned_cols=94 Identities=14% Similarity=0.212 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCC--CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEc--CCCCc
Q 039862 60 TVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKV--ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYG--GSVNG 135 (173)
Q Consensus 60 ~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~--a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYG--GSV~~ 135 (173)
..+.|.++++....... ..++ +-++ +|.|.| .+++++.++...||+.+....+ ..+ -++. +++++
T Consensus 54 Y~~~l~~ei~~~~~~~~-~~~i----~siy-~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~----~ei-t~E~~p~~~~~ 122 (394)
T PRK08898 54 YLDALRADLEQALPLVW-GRQV----HTVF-IGGGTPSLLSAAGLDRLLSDVRALLPLDPD----AEI-TLEANPGTFEA 122 (394)
T ss_pred HHHHHHHHHHHHHHhcc-CCce----eEEE-ECCCCcCCCCHHHHHHHHHHHHHhCCCCCC----CeE-EEEECCCCCCH
Confidence 66777777765432211 1121 1222 455555 7899999999999887522111 122 3444 77887
Q ss_pred ccHHHHhcCCCCCEEEeecccCChHHHHHH
Q 039862 136 ANCKELAAQPDVDGFLVGGASLKPEFIDII 165 (173)
Q Consensus 136 ~n~~~~~~~~~vDG~LiG~asl~~~f~~Ii 165 (173)
+.... +...|++-+-+|==|.+++.++.+
T Consensus 123 e~L~~-l~~~GvnrisiGvQS~~~~~L~~l 151 (394)
T PRK08898 123 EKFAQ-FRASGVNRLSIGIQSFNDAHLKAL 151 (394)
T ss_pred HHHHH-HHHcCCCeEEEecccCCHHHHHHh
Confidence 66544 445899999999888887755443
No 386
>PLN02363 phosphoribosylanthranilate isomerase
Probab=27.37 E-value=49 Score=28.19 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=23.4
Q ss_pred ceEEEcCCCCcccHHHHhcCCCCCEEEe
Q 039862 125 TRIIYGGSVNGANCKELAAQPDVDGFLV 152 (173)
Q Consensus 125 i~ilYGGSV~~~n~~~~~~~~~vDG~Li 152 (173)
.|++-.|+++++|+.+.+...+..|+=|
T Consensus 200 ~p~iLAGGL~peNV~~ai~~~~P~GVDV 227 (256)
T PLN02363 200 NGWLLAGGLTPENVHEAVSLLKPTGVDV 227 (256)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCcEEEe
Confidence 5789999999999999988766666655
No 387
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=27.33 E-value=21 Score=27.42 Aligned_cols=9 Identities=56% Similarity=1.239 Sum_probs=6.6
Q ss_pred EEEcc-cccc
Q 039862 12 VILGH-SERR 20 (173)
Q Consensus 12 viiGH-SERR 20 (173)
+|||| ||+|
T Consensus 45 IlVGHHSE~R 54 (126)
T PF12083_consen 45 ILVGHHSEKR 54 (126)
T ss_pred eeccccchHH
Confidence 57785 8887
No 388
>PRK06267 hypothetical protein; Provisional
Probab=27.28 E-value=4.3e+02 Score=23.18 Aligned_cols=121 Identities=18% Similarity=0.120 Sum_probs=65.7
Q ss_pred EEEccccccccc--CCCHHHHHHHHHHHHHCCCe--EEEEe--CCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEE
Q 039862 12 VILGHSERRALL--NESNDFVGDKVAYALSRGLK--VIACV--GETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAY 85 (173)
Q Consensus 12 viiGHSERR~~~--~E~~~~i~~Kv~~al~~gl~--pIlCv--GE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAY 85 (173)
....|.+.+..+ +-+-+...+-++.|.+.|+. +-+.+ ||+.+++. ++...+..+....-.+..|
T Consensus 135 ~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~----------~~l~~l~~l~~d~v~~~~L 204 (350)
T PRK06267 135 VETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGLGETEDDIE----------KLLNLIEELDLDRITFYSL 204 (350)
T ss_pred eecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHH----------HHHHHHHHcCCCEEEEEee
Confidence 334455544322 22555666778899999998 33445 56654421 1222233222111123345
Q ss_pred cccccccCC----CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCC-CcccHHHHhcCCCCCEE----Eeec
Q 039862 86 EPVWAIGTG----KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSV-NGANCKELAAQPDVDGF----LVGG 154 (173)
Q Consensus 86 EPvwAIGtG----~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV-~~~n~~~~~~~~~vDG~----LiG~ 154 (173)
-|.- ||. .+++++++-+++...|-.+ .+.+|+-||-+ +-.+... ....|++|+ +.|.
T Consensus 205 ~P~p--GTp~~~~~~~s~~e~lr~ia~~Rl~l---------P~~~I~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~ 270 (350)
T PRK06267 205 NPQK--GTIFENKPSVTTLEYMNWVSSVRLNF---------PKIKIITGTWVDKLTNIGP-LIMSGSNVITKFPLFSM 270 (350)
T ss_pred eECC--CCcCCCCCCCCHHHHHHHHHHHHHHC---------CCCCcchhhHhHhcchhhH-HhhcCcceeeccchhcc
Confidence 5542 442 2378889888998888763 34667666642 2233333 344888999 6654
No 389
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.07 E-value=3.6e+02 Score=22.22 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=40.8
Q ss_pred chhhcCCCEEEEcccccc-cccCCCH--------HHHHHHHHHHHHCCCeEEEEeCCCHH--HHhcCChHHHHHHHHHHH
Q 039862 3 MLVNLSIPWVILGHSERR-ALLNESN--------DFVGDKVAYALSRGLKVIACVGETLE--QRESGSTVAVVAEQTKAI 71 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR-~~~~E~~--------~~i~~Kv~~al~~gl~pIlCvGE~~~--~r~~~~~~~~l~~Ql~~~ 71 (173)
+|++.|++.+-++.+-.+ ..+.-.+ +.+.+-++.|...|-..|. ++.... ........+.+.+.++.+
T Consensus 60 ~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (279)
T TIGR00542 60 AIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQ-LAGYDVYYEEHDEETRRRFREGLKEA 138 (279)
T ss_pred HHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEE-ecCcccccCcCCHHHHHHHHHHHHHH
Confidence 466667766554443321 1122222 2355667888899987664 443211 000111223334444443
Q ss_pred HhccCCCCCeEEEEccc
Q 039862 72 AEKISNWDNVVLAYEPV 88 (173)
Q Consensus 72 l~~v~~~~~iiIAYEPv 88 (173)
.+-. ....+.+++||.
T Consensus 139 ~~~A-~~~Gv~l~lE~~ 154 (279)
T TIGR00542 139 VELA-ARAQVTLAVEIM 154 (279)
T ss_pred HHHH-HHcCCEEEEeeC
Confidence 3211 134689999985
No 390
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=27.04 E-value=70 Score=26.59 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=24.8
Q ss_pred chhhcCCCEEEEcccccccccCCCHH-------HHHHHHHHHHHCCCeEEEE
Q 039862 3 MLVNLSIPWVILGHSERRALLNESND-------FVGDKVAYALSRGLKVIAC 47 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~-------~i~~Kv~~al~~gl~pIlC 47 (173)
.|++.|.+-++++|..-|....|+.+ .++.|+.+.+ .|+.-+++
T Consensus 128 ~L~~~g~nII~tAhe~~~~~~de~G~~~~r~~P~i~~K~~n~l-~G~~DvV~ 178 (220)
T TIGR01618 128 VLKESNKNIYATAWELTNQSSGESGQIYNRYQPDIREKVLNAF-LGLTDVVG 178 (220)
T ss_pred HHHhCCCcEEEEEeeccccccCCCCCCcceechhhhhhHHHhh-cccccEEE
Confidence 46667777888888765444433333 4556665555 34444433
No 391
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=26.92 E-value=1.4e+02 Score=27.68 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=56.6
Q ss_pred CCeEEEEcccccccCCCCC----------CHHHHHHHHHHHHHHHHhccchhhcCcceEE---EcCCCCcccHHHHhcC-
Q 039862 79 DNVVLAYEPVWAIGTGKVA----------TPAQAQEVHAELRKWLKDNVSAEVAASTRII---YGGSVNGANCKELAAQ- 144 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a----------~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il---YGGSV~~~n~~~~~~~- 144 (173)
.+++.-=-| +|+|=+. +...+++.+.++.+++. +|.+...+..-|- |+|-.-|.=+.++.+.
T Consensus 118 aNiLfLd~P---vGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~-kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N 193 (454)
T KOG1282|consen 118 ANILFLDQP---VGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFE-KFPEYKSNDFYIAGESYAGHYVPALAQEILKGN 193 (454)
T ss_pred ccEEEEecC---CcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHH-hChhhcCCCeEEecccccceehHHHHHHHHhcc
Confidence 345554445 3666553 24456899999999997 5666656655554 9999999999999884
Q ss_pred -------CCCCEEEeecccCCh
Q 039862 145 -------PDVDGFLVGGASLKP 159 (173)
Q Consensus 145 -------~~vDG~LiG~asl~~ 159 (173)
.++-|++||...+++
T Consensus 194 ~~~~~~~iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 194 KKCCKPNINLKGYAIGNGLTDP 215 (454)
T ss_pred ccccCCcccceEEEecCcccCc
Confidence 267899999998885
No 392
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=26.85 E-value=42 Score=27.18 Aligned_cols=61 Identities=34% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEE--cCCCCcccHHHHhcCCCCCEEEeecccC
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY--GGSVNGANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY--GGSV~~~n~~~~~~~~~vDG~LiG~asl 157 (173)
+.-++++++.+.+.++..-...-+ ...++.++- ==----+|+.++++.++|||+++|..-|
T Consensus 92 ~ves~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dl 154 (221)
T PF03328_consen 92 KVESAEDARQAVAALRYPPAGRRG--ANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADL 154 (221)
T ss_dssp T--SHHHHHHHHHHHSHTTTCTTT--HHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHH
T ss_pred ccCcHHHHHHHHHHHhhccccccc--ccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHH
Confidence 345688888888877654111000 012233321 1001136899999999999999996543
No 393
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=26.72 E-value=1.8e+02 Score=25.43 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 100 AQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 100 e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
+...++++.||+. + .+++|+.|.-.+.+.+..+. ..++|++.||
T Consensus 120 ~~~~~~i~~ik~~----~-----p~v~Vi~G~v~t~~~A~~l~-~aGaD~I~vg 163 (325)
T cd00381 120 VYVIEMIKFIKKK----Y-----PNVDVIAGNVVTAEAARDLI-DAGADGVKVG 163 (325)
T ss_pred HHHHHHHHHHHHH----C-----CCceEEECCCCCHHHHHHHH-hcCCCEEEEC
Confidence 4455566666654 1 24788886666666666665 4899999985
No 394
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=26.71 E-value=1.5e+02 Score=24.95 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=26.4
Q ss_pred cceEEEcCCCCcccH-------HHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIYGGSVNGANC-------KELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~-------~~~~~~~~vDG~LiG~asl~ 158 (173)
.+||.-=|+++.+|. .+.+ ..|.||+.+|++-++
T Consensus 196 ~ipV~a~GGi~~~~~~~~l~~v~~~~-~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 196 PVPVVIAGGPKTDTDREFLEMVRDAM-EAGAAGVAVGRNVFQ 236 (267)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH-HcCCcEEehhhhhhc
Confidence 589988888998763 2333 478999999999886
No 395
>PLN02840 tRNA dimethylallyltransferase
Probab=26.66 E-value=2.8e+02 Score=25.49 Aligned_cols=48 Identities=27% Similarity=0.276 Sum_probs=26.0
Q ss_pred CeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhc-cCCCCCeEEEEcccccccCCCCC
Q 039862 42 LKVIACVGETLEQRESGSTVAVVAEQTKAIAEK-ISNWDNVVLAYEPVWAIGTGKVA 97 (173)
Q Consensus 42 l~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~-v~~~~~iiIAYEPvwAIGtG~~a 97 (173)
..+|+++|-+ |.-+.-|..+|..-+.. +-....+- -| .-+-|||.++.
T Consensus 21 ~~vi~I~Gpt------gsGKTtla~~La~~~~~~iis~Ds~q-vY-r~~~IgTaKpt 69 (421)
T PLN02840 21 EKVIVISGPT------GAGKSRLALELAKRLNGEIISADSVQ-VY-RGLDVGSAKPS 69 (421)
T ss_pred CeEEEEECCC------CCCHHHHHHHHHHHCCCCeEeccccc-ee-cceeEEcCCCC
Confidence 3467788876 34444566667665542 10112211 24 35779999873
No 396
>PF11918 DUF3436: Domain of unknown function (DUF3436); InterPro: IPR024591 This uncharacterised N-terminal domain is associated with the interphotoreceptor retinol-binding protein family. It is about 50 amino acids in length and has two conserved sequence motifs: DPRL and SYEP.
Probab=26.63 E-value=43 Score=22.26 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=11.1
Q ss_pred CCCeEEEEccccc
Q 039862 78 WDNVVLAYEPVWA 90 (173)
Q Consensus 78 ~~~iiIAYEPvwA 90 (173)
..+++|.|||-..
T Consensus 14 DpRL~ISYEP~~~ 26 (55)
T PF11918_consen 14 DPRLVISYEPSYV 26 (55)
T ss_pred CCCeEEEeCCCCC
Confidence 5789999999765
No 397
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=26.60 E-value=4.5e+02 Score=23.52 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCeEEEE--------eCCCHHHHhcCCh--------HHHHHHHHHHHHhccCCCCCe---EEEEcccc
Q 039862 29 FVGDKVAYALSRGLKVIAC--------VGETLEQRESGST--------VAVVAEQTKAIAEKISNWDNV---VLAYEPVW 89 (173)
Q Consensus 29 ~i~~Kv~~al~~gl~pIlC--------vGE~~~~r~~~~~--------~~~l~~Ql~~~l~~v~~~~~i---iIAYEPvw 89 (173)
.+.+.+..|.+.||.+++= .+.........-. ...+..|+..=.+ ..+.+ -++.||.+
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~---~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFK---NYDTVIGFELINEPNG 193 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhcc---CCCceeeeeeecCCcc
Confidence 5666699999999988874 3322221111100 1112222222222 23333 47999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHH
Q 039862 90 AIGTGKVATPAQAQEVHAELRKWL 113 (173)
Q Consensus 90 AIGtG~~a~~e~i~~~~~~Ir~~~ 113 (173)
|++....+--. .+++..||+.+
T Consensus 194 -~~~~~~w~~~~-~~A~~~v~~~i 215 (407)
T COG2730 194 -IVTSETWNGGD-DEAYDVVRNAI 215 (407)
T ss_pred -cCCccccccch-HHHHHHHHhhh
Confidence 77666543333 67777776544
No 398
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=26.38 E-value=2e+02 Score=21.91 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCC--CCHHHHHHHHHHHHHH
Q 039862 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKV--ATPAQAQEVHAELRKW 112 (173)
Q Consensus 61 ~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~--a~~e~i~~~~~~Ir~~ 112 (173)
.+.|..-...+|......+---||+ | +||||.- |..+-++-+.+.||++
T Consensus 89 ~~~L~~~~~~~L~~a~~~~~~SIAf-P--ai~tG~~gfP~~~aa~i~l~~v~~~ 139 (140)
T cd02905 89 ENALYSCYRNVLQLAKELGLESIAL-C--VISSEKRNYPPEAAAHIALRTVRRF 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-C--CcccCCCCCCHHHHHHHHHHHHHHh
Confidence 4445544455554333333335777 6 5666655 5555556777777776
No 399
>PRK14072 6-phosphofructokinase; Provisional
Probab=26.34 E-value=1.2e+02 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=33.8
Q ss_pred EEEEcccccccc--cCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHH
Q 039862 11 WVILGHSERRAL--LNESNDFVGDKVAYALSRGLKVIACVGETLEQ 54 (173)
Q Consensus 11 ~viiGHSERR~~--~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~ 54 (173)
.+++|-| |.+. |.++.+...+=+++..++++.-+++||-...-
T Consensus 72 Gt~Lgss-R~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~ 116 (416)
T PRK14072 72 SGALGSC-RYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSM 116 (416)
T ss_pred CeEeccC-CCCCcccccChHHHHHHHHHHHHcCCCEEEEECChHHH
Confidence 5689999 7665 55566667777888899999999999987654
No 400
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=26.28 E-value=1.1e+02 Score=27.42 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCccc-HHHHhcCCCCCEEEeecccC
Q 039862 98 TPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN-CKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 98 ~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n-~~~~~~~~~vDG~LiG~asl 157 (173)
.+..+.++.+.-|+++.+.- +..+||+.-|+|...- +...+. .+.|++.+|++-+
T Consensus 233 ~~~ai~d~~~a~~~~~~e~g----~r~vpVIAdGGI~tg~di~kAlA-lGAdaV~iGt~~a 288 (369)
T TIGR01304 233 MATAIADVAAARRDYLDETG----GRYVHVIADGGIETSGDLVKAIA-CGADAVVLGSPLA 288 (369)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCCceEEEeCCCCCHHHHHHHHH-cCCCEeeeHHHHH
Confidence 34455565555566554321 2359999977776654 444444 6999999998643
No 401
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.96 E-value=1.9e+02 Score=26.18 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=36.8
Q ss_pred cchhhcCCCEEEEcc---ccc-cccc--CCCHHHHHHHHHHHHHCCCeEEEEe-----CCCHHH
Q 039862 2 EMLVNLSIPWVILGH---SER-RALL--NESNDFVGDKVAYALSRGLKVIACV-----GETLEQ 54 (173)
Q Consensus 2 ~mLkd~G~~~viiGH---SER-R~~~--~E~~~~i~~Kv~~al~~gl~pIlCv-----GE~~~~ 54 (173)
+.|+++||+.+.+|- |++ .+.+ +-+.+.+.+-++.+.++|+.+...+ |||.++
T Consensus 291 ~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~ 354 (472)
T TIGR03471 291 KVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRET 354 (472)
T ss_pred HHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHH
Confidence 468999999999996 232 1111 2355667788899999999987664 566554
No 402
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=25.90 E-value=3.2e+02 Score=21.34 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=39.0
Q ss_pred CCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHh
Q 039862 40 RGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKD 115 (173)
Q Consensus 40 ~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~ 115 (173)
+=+...++|-..++++. ....+-...++......+. . +-|+-| | +|==+..-++|+.+.++.+.+.+.|++
T Consensus 36 ~alVvF~~VE~~De~~~-~~vv~~av~eI~~~a~kv~-~-~~ivly-P-yAHLSs~La~P~~A~~iL~~le~~L~~ 106 (138)
T PF08915_consen 36 NALVVFIAVEKGDEENP-EGVVEKAVEEIKWVAKKVK-A-KRIVLY-P-YAHLSSSLASPDVAVEILKKLEERLKS 106 (138)
T ss_dssp EEEEEEEE-BGGGGG-H-HHHHHHHHHHHHHHHHHTT---SEEEEE-E--GGGSSSB--HHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEcCCCCCCH-HHHHHHHHHHHHHHHHhcC-C-CEEEEe-C-cccccCCcCChHHHHHHHHHHHHHHHh
Confidence 34455555555444321 1122223333444444443 3 446668 5 888888889999999999999999844
No 403
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=25.81 E-value=46 Score=27.22 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhh----cCcceEEEcCCCCcccHHHHhcCC
Q 039862 78 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV----AASTRIIYGGSVNGANCKELAAQP 145 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~----~~~i~ilYGGSV~~~n~~~~~~~~ 145 (173)
+..+.|-|.|.-. +. ..+.+.|++.+.+...... --.+||.|||+..++ ..+++...
T Consensus 49 ~~sllV~fdp~~~-------~~---~~l~~~l~~~~~~~~~~~~~~~r~~~iPV~Y~~~~g~D-L~~vA~~~ 109 (202)
T PF02682_consen 49 YRSLLVHFDPLRI-------DR---AALRAALEELLASPQPSEKPPSRLIEIPVCYDGEFGPD-LEEVAEHN 109 (202)
T ss_dssp SSEEEEEESTTTS-------HH---HHHHHHHHHHHCCCCSSCCCCEEEEEEEEEESTTTHTT-HHHHHHHH
T ss_pred ccEEEEEEcCCcC-------CH---HHHHHHHHHhhhhccccccCCCceEEEEEEECCCCCCC-HHHHHHHh
Confidence 7788888988532 23 3455566666554221111 135899999998874 45555443
No 404
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=25.73 E-value=3.1e+02 Score=21.12 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=64.3
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeE-EEEeCCCHHHHhcCChHHHHHHHHHHHHhcc-CC---
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKV-IACVGETLEQRESGSTVAVVAEQTKAIAEKI-SN--- 77 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~p-IlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v-~~--- 77 (173)
.||+.|+++|++-=+|-..+ .|.....-++.|.++||.. .+....... ..--..|.+-.++.+ ..
T Consensus 14 ~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~G~Yhf~~~~~-------~~~a~~qA~~f~~~~~~~~~~ 83 (181)
T PF01183_consen 14 KVKAAGIDFVIIKATEGTSY---VDPYFESNIKNAKAAGLPVGAYHFARATN-------SSDAEAQADYFLNQVKGGDPG 83 (181)
T ss_dssp HHHHTTEEEEEEEEEETTTE---E-TTHHHHHHHHHHTTSEEEEEEE--TTT-------HCHHHHHHHHHHHCTHTSSTS
T ss_pred HHHHCCCCEEEEEeeeCCCe---ecchHHHHHHHHHHcCCeEEEEEEeccCC-------cccHHHHHHHHHHHhcccCCC
Confidence 57899999999988887544 3444566789999999986 444443310 111346666666666 32
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCC
Q 039862 78 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGS 132 (173)
Q Consensus 78 ~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGS 132 (173)
.-++++-+|-. .....+.......+....+.+++..| .-|+||.+.
T Consensus 84 ~~~~~lD~E~~----~~~~~~~~~~~~~~~~f~~~~~~~~G-----~~~~iY~~~ 129 (181)
T PF01183_consen 84 DLPPALDVEDD----KSNNPSKSDNTAWVKAFLDEVEKAAG-----YKPGIYTSK 129 (181)
T ss_dssp CS-EEEEE-S-----GGCCSSHHHHHHHHHHHHHHHHHHCT-----SEEEEEEEH
T ss_pred cceEEEecccc----ccCCCCHHHHHHHHHHHHHHHHHHhC-----CceeEeecH
Confidence 33467888843 23334555555544444444544343 367889764
No 405
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=25.64 E-value=3e+02 Score=25.40 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=57.3
Q ss_pred chhhcCCCEEEEcc--cccc-------------------cccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChH
Q 039862 3 MLVNLSIPWVILGH--SERR-------------------ALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV 61 (173)
Q Consensus 3 mLkd~G~~~viiGH--SERR-------------------~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~ 61 (173)
+++..|+..++++= |||- ..+..++.+ .++..+.|..++.-.|.-.-+-+..
T Consensus 141 e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D----~~Rf~~LGa~~v~v~GNlKfd~~~~--- 213 (419)
T COG1519 141 ELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEED----AQRFRSLGAKPVVVTGNLKFDIEPP--- 213 (419)
T ss_pred HHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHH----HHHHHhcCCcceEEecceeecCCCC---
Confidence 45677999999986 5551 122345544 5778889999988888764333222
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 62 AVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 62 ~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
..+..++...-.. ++ .. .|+|+.++--+=.-|.+-++|+.+++.
T Consensus 214 ~~~~~~~~~~r~~---l~---~~-r~v~iaaSTH~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 214 PQLAAELAALRRQ---LG---GH-RPVWVAASTHEGEEEIILDAHQALKKQ 257 (419)
T ss_pred hhhHHHHHHHHHh---cC---CC-CceEEEecCCCchHHHHHHHHHHHHhh
Confidence 2222222222111 11 12 788988876665566677888777665
No 406
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=25.55 E-value=48 Score=24.71 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=17.3
Q ss_pred chhhcCCCEEEEccccccccc
Q 039862 3 MLVNLSIPWVILGHSERRALL 23 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~ 23 (173)
++++.++++++.||+=++...
T Consensus 97 ~~~~~~~d~vi~GHtH~~~~~ 117 (155)
T cd00841 97 LAKEGGADVVLYGHTHIPVIE 117 (155)
T ss_pred hhhhcCCCEEEECcccCCccE
Confidence 567889999999999887543
No 407
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.48 E-value=2.4e+02 Score=25.10 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=40.9
Q ss_pred cchhhcCCCEEEEccccccc---ccCCCHHH-----------------HHHHHHHHHHCCCeE---EEEeCCCHHHHhcC
Q 039862 2 EMLVNLSIPWVILGHSERRA---LLNESNDF-----------------VGDKVAYALSRGLKV---IACVGETLEQRESG 58 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~---~~~E~~~~-----------------i~~Kv~~al~~gl~p---IlCvGE~~~~r~~~ 58 (173)
++|-++|++++.+||.=.-+ -+.+..+. ..+=+++|++.|... .+++.+....++.+
T Consensus 75 ~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~ 154 (347)
T PLN02746 75 QRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNIN 154 (347)
T ss_pred HHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC
Confidence 57899999999999721100 00000000 123367788887663 33444555566667
Q ss_pred ChHHHHHHHHHHHHh
Q 039862 59 STVAVVAEQTKAIAE 73 (173)
Q Consensus 59 ~~~~~l~~Ql~~~l~ 73 (173)
.+.+...+++..++.
T Consensus 155 ~t~~e~l~~~~~~v~ 169 (347)
T PLN02746 155 CSIEESLVRYREVAL 169 (347)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777776666554
No 408
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=25.30 E-value=2.8e+02 Score=22.35 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=29.1
Q ss_pred cCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHH
Q 039862 7 LSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLE 53 (173)
Q Consensus 7 ~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~ 53 (173)
+..+++|+.+. + ....+ ..+.++.+.+.|...++|-|.+..
T Consensus 8 ~DlDGTLl~~~-~-~i~~~----~~~ai~~~~~~G~~~~iaTGR~~~ 48 (272)
T PRK10530 8 LDLDGTLLTPK-K-TILPE----SLEALARAREAGYKVIIVTGRHHV 48 (272)
T ss_pred EeCCCceECCC-C-ccCHH----HHHHHHHHHHCCCEEEEEcCCChH
Confidence 45688888653 2 22222 245688999999999999998864
No 409
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=25.07 E-value=91 Score=26.31 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchh-hcCcceEEEcCCCCcccHHHHhc
Q 039862 77 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE-VAASTRIIYGGSVNGANCKELAA 143 (173)
Q Consensus 77 ~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~-~~~~i~ilYGGSV~~~n~~~~~~ 143 (173)
.+..+.|-|-|. ..++..+.+..+.+.+.....-..+ .--.+|+.|||...|++ +++++
T Consensus 46 ~~~sllv~~d~~-------~~~~~~l~~~L~~~~~~~~~~~~~~~~~IeIPV~Y~~~~GpDL-~~va~ 105 (223)
T COG2049 46 GYRSLLVIYDPP-------RLDPQELLERLRALWEEIEALEAAGIRLIEIPVVYGGEYGPDL-AEVAR 105 (223)
T ss_pred cceeEEEEeccc-------ccCHHHHHHHHHHHHhchhhhccccCCEEEEeeEeCCCCCCCH-HHHHH
Confidence 377888888763 2445555554444433322221111 12368999999999998 44444
No 410
>KOG0831 consensus Acyl-CoA:diacylglycerol acyltransferase (DGAT) [Lipid transport and metabolism]
Probab=25.04 E-value=2.1e+02 Score=25.68 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=51.6
Q ss_pred HHHHHHCC--CeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhc---cC-----------------CC-CC-eEEEEcccc
Q 039862 34 VAYALSRG--LKVIACVGETLEQRESGSTVAVVAEQTKAIAEK---IS-----------------NW-DN-VVLAYEPVW 89 (173)
Q Consensus 34 v~~al~~g--l~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~---v~-----------------~~-~~-iiIAYEPvw 89 (173)
|+.|+..| +.|++|.||++-.........-..+..+...+. +. +. .+ .++.=||+-
T Consensus 210 VklAl~tGs~LVP~~sFGE~di~~q~~np~~s~lr~~Q~~~k~~~gf~~~~f~grg~~~~~~gllP~r~pi~~VVG~Pi~ 289 (334)
T KOG0831|consen 210 VKLALQTGASLVPVFSFGENDVYKQVENPKGSRLRKFQEWFKKIFGFTPPIFYGRGFFQYTFGLLPFRRPITTVVGEPIP 289 (334)
T ss_pred HHHHHHhCCCcCceeecccceeeeeecCCCcchhHHHHHHHHHhcCcccceEecccccccccccccccCcceeEecCccC
Confidence 78888876 679999998864322222222222222222211 11 01 11 344456654
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEc
Q 039862 90 AIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYG 130 (173)
Q Consensus 90 AIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYG 130 (173)
.-= -.-|+.|+|.+.|+..=+.+++.|. +-+.-||
T Consensus 290 v~k-~~~Pt~e~id~~H~~y~~~L~~LF~-----~hK~k~g 324 (334)
T KOG0831|consen 290 VPK-TENPTQEQIDKYHGLYIDALRKLFD-----EHKTKYG 324 (334)
T ss_pred Ccc-CcCCCHHHHHHHHHHHHHHHHHHHH-----hhccccC
Confidence 432 2238899999999998888888875 2445555
No 411
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.92 E-value=1.8e+02 Score=24.69 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhc---CCCCCEEEe
Q 039862 92 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAA---QPDVDGFLV 152 (173)
Q Consensus 92 GtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~---~~~vDG~Li 152 (173)
|-+-..|.++-.++++...+.. +.++||+-|=+-+.+++.+++. ..++|++++
T Consensus 50 GE~~~Lt~eEr~~v~~~~~~~~--------~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 50 GEFFSLTPAEYEQVVEIAVSTA--------KGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred cCcccCCHHHHHHHHHHHHHHh--------CCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEE
No 412
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.65 E-value=2.2e+02 Score=24.67 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=66.7
Q ss_pred HHHHHHHHHHC---CCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEccc------------ccccCC
Q 039862 30 VGDKVAYALSR---GLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPV------------WAIGTG 94 (173)
Q Consensus 30 i~~Kv~~al~~---gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPv------------wAIGtG 94 (173)
+..++..+... .+.|.+=.|.+.-+ .+.+++..-.+...+-+ .+=|-|.=+ -|.-.|
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e----~s~e~i~~L~~~GaD~i----ELGvPfSDPvADGP~Iq~A~~rAL~~g 75 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLE----TSLEIIKTLVEAGADIL----ELGVPFSDPVADGPTIQAAHLRALAAG 75 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHH----HHHHHHHHHHhCCCCEE----EecCCCCCcCccCHHHHHHHHHHHHCC
Confidence 34555555544 59999999996433 23444433333322211 111222111 122223
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCc------ccHHHHhcCCCCCEEEeecccCCh-H-HHHHHH
Q 039862 95 KVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNG------ANCKELAAQPDVDGFLVGGASLKP-E-FIDIIK 166 (173)
Q Consensus 95 ~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~------~n~~~~~~~~~vDG~LiG~asl~~-~-f~~Ii~ 166 (173)
. +++++-++.+.+|+. ..++|++.=+=-|+ ++.-+.++..+|||+||=.--... + |.+.++
T Consensus 76 ~--t~~~~lel~~~~r~~---------~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~ 144 (265)
T COG0159 76 V--TLEDTLELVEEIRAK---------GVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE 144 (265)
T ss_pred C--CHHHHHHHHHHHHhc---------CCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH
Confidence 3 366666666666653 34577664444444 445567888999999999887763 3 777776
Q ss_pred HH
Q 039862 167 SA 168 (173)
Q Consensus 167 ~~ 168 (173)
..
T Consensus 145 ~~ 146 (265)
T COG0159 145 KH 146 (265)
T ss_pred Hc
Confidence 43
No 413
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.45 E-value=4.4e+02 Score=22.36 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=59.2
Q ss_pred chhhcC-CCEEEEccc--cc-ccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCC
Q 039862 3 MLVNLS-IPWVILGHS--ER-RALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW 78 (173)
Q Consensus 3 mLkd~G-~~~viiGHS--ER-R~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~ 78 (173)
.+.+.| |+.++++=| |- .....|-.+ +.+.+....+..+..++++|... +.+.+ +..+.+-+ . .
T Consensus 29 ~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~-~~~~~~~~~~~~~pvi~gv~~~~-------t~~~i-~la~~a~~-~--G 96 (290)
T TIGR00683 29 HNIDKMKVDGLYVGGSTGENFMLSTEEKKE-IFRIAKDEAKDQIALIAQVGSVN-------LKEAV-ELGKYATE-L--G 96 (290)
T ss_pred HHHhCCCcCEEEECCcccccccCCHHHHHH-HHHHHHHHhCCCCcEEEecCCCC-------HHHHH-HHHHHHHH-h--C
Confidence 356778 888766522 11 011112222 33334444445677888998652 22221 11222111 1 1
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceE-EE------cCCCCcccHHHHhcCCCCCEEE
Q 039862 79 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRI-IY------GGSVNGANCKELAAQPDVDGFL 151 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~i-lY------GGSV~~~n~~~~~~~~~vDG~L 151 (173)
-.-++.+-|.|. .++.+. +.++-++.... ..++|+ +| |-.++++-..++...++|=|+=
T Consensus 97 ad~v~v~~P~y~-----~~~~~~---i~~yf~~v~~~------~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK 162 (290)
T TIGR00683 97 YDCLSAVTPFYY-----KFSFPE---IKHYYDTIIAE------TGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVK 162 (290)
T ss_pred CCEEEEeCCcCC-----CCCHHH---HHHHHHHHHhh------CCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEE
Confidence 123444667652 334444 34444443321 112443 33 6678888888888777765554
Q ss_pred e
Q 039862 152 V 152 (173)
Q Consensus 152 i 152 (173)
-
T Consensus 163 ~ 163 (290)
T TIGR00683 163 F 163 (290)
T ss_pred e
Confidence 3
No 414
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.42 E-value=4.1e+02 Score=21.99 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=72.5
Q ss_pred cchhhcCCCEEE-EcccccccccC-CCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCC
Q 039862 2 EMLVNLSIPWVI-LGHSERRALLN-ESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD 79 (173)
Q Consensus 2 ~mLkd~G~~~vi-iGHSERR~~~~-E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~ 79 (173)
+.|.+.|+++++ .|++=.=..+. |--..+-+.+..+....+..|.++|.+.. .+ ..++.+.+.+ . .-
T Consensus 25 ~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~-------~~-~i~~a~~a~~-~--Ga 93 (281)
T cd00408 25 EFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANST-------RE-AIELARHAEE-A--GA 93 (281)
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccH-------HH-HHHHHHHHHH-c--CC
Confidence 356778999877 55532222221 11122334444444556778888887532 22 2233333222 1 11
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceE-EE------cCCCCcccHHHHhcCCCCCEEEe
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRI-IY------GGSVNGANCKELAAQPDVDGFLV 152 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~i-lY------GGSV~~~n~~~~~~~~~vDG~Li 152 (173)
.-++..=|.|.- ++++.+-+-...|-+. .++|+ +| |-.++++-..+++..++|-|+=-
T Consensus 94 d~v~v~pP~y~~-----~~~~~~~~~~~~ia~~----------~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~ 158 (281)
T cd00408 94 DGVLVVPPYYNK-----PSQEGIVAHFKAVADA----------SDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKD 158 (281)
T ss_pred CEEEECCCcCCC-----CCHHHHHHHHHHHHhc----------CCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEe
Confidence 233444455422 4555554444443321 23554 44 78889999999998888888765
Q ss_pred ecccCCh-HHHHHHHHH
Q 039862 153 GGASLKP-EFIDIIKSA 168 (173)
Q Consensus 153 G~asl~~-~f~~Ii~~~ 168 (173)
.+ -+. .+.++++..
T Consensus 159 s~--~d~~~~~~~~~~~ 173 (281)
T cd00408 159 SS--GDLDRLTRLIALL 173 (281)
T ss_pred CC--CCHHHHHHHHHhc
Confidence 54 333 366665543
No 415
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=24.36 E-value=1e+02 Score=26.93 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=55.7
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEE----EEeCCCHHHHhcCChHHHHHHHHHHHHhccCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVI----ACVGETLEQRESGSTVAVVAEQTKAIAEKISN 77 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pI----lCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~ 77 (173)
++|++.|...+++.|...- .|.++.+.+-++++.++|+... +.-|- ++..+.+.+-.+.+.. +.
T Consensus 214 ~~L~~~~~~~~~vsh~nh~---~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gv-------nD~~~~l~~L~~~l~~-~g- 281 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHC---NEITEEFAEAMKKLRTVNVTLLNQSVLLRGV-------NDRAQILAKLSIALFK-VG- 281 (331)
T ss_pred HHHHhcCCcEEEEccCCCh---HhCCHHHHHHHHHHHHcCCEEEeecceECCc-------CCCHHHHHHHHHHHhh-cC-
Confidence 5788999999999988763 3666778888899999998532 23332 2333333333332221 11
Q ss_pred CCCeEE-EEcccccccC-CCCCCHHHHHHHHHHHHHHH
Q 039862 78 WDNVVL-AYEPVWAIGT-GKVATPAQAQEVHAELRKWL 113 (173)
Q Consensus 78 ~~~iiI-AYEPvwAIGt-G~~a~~e~i~~~~~~Ir~~~ 113 (173)
..+.++ -+-|+. |+ --..+.+...++++.+|+.+
T Consensus 282 V~pyyl~~~~~~~--g~~~f~~~~~~~~~i~~~l~~~~ 317 (331)
T TIGR00238 282 IIPYYLHYLDKVQ--GAKHFLVPDAEAAQIVKELARLT 317 (331)
T ss_pred eecCeecCcCCCC--CcccccCCHHHHHHHHHHHHhcC
Confidence 122221 223332 22 22256777777777777664
No 416
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=24.35 E-value=2.4e+02 Score=25.03 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCChHHHHHHHH
Q 039862 103 QEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 167 (173)
Q Consensus 103 ~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~f~~Ii~~ 167 (173)
+++.+.|+.+-+. ..+.+|+.||..-.-+-.+++..+++|-++.|..- ..|.++++.
T Consensus 50 ~~~~~~i~~~k~~------~p~~~vvvgGc~a~~~~ee~~~~~~vD~vv~~e~~--~~~~~ll~~ 106 (414)
T TIGR01579 50 SKARRAIRRARRQ------NPTAKIIVTGCYAQSNPKELADLKDVDLVLGNKEK--DKINKLLSL 106 (414)
T ss_pred HHHHHHHHHHHhh------CCCcEEEEECCccccCHHHHhcCCCCcEEECCCCH--HHHHHHHHH
Confidence 4556666654221 34588999999887778888888899988877552 125555443
No 417
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=24.25 E-value=2.9e+02 Score=24.53 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=57.8
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhc---cCCCCCeEEEEcccccccCCCCCCHHHHHHHHHH
Q 039862 32 DKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK---ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAE 108 (173)
Q Consensus 32 ~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~---v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~ 108 (173)
..++..++.+=..++.+|+...+...++..+.+++-+..-|-. +...+.+++.. -+|...+.++++++.+.
T Consensus 217 ~dv~~vl~~~G~a~iG~g~~~g~~~~~r~~~A~~~al~~pLl~~~~i~~A~~~Lv~i------~~~~~l~l~ev~~~~~~ 290 (349)
T TIGR00065 217 ADVRAVMSGGGVAMMGIGEALGEDTANRAFEAVRKALSSPLLDVDKISGAKGALVHI------TGGADLTLLEAEEIQEI 290 (349)
T ss_pred HHHHHHHhcCCeEEEEEEEecCCcchHHHHHHHHHHHhCCCcCCcccccccEEEEEE------EcCCCCCHHHHHHHHHH
Confidence 3467888888788999998754322224555555555443321 12244555432 23445789999999999
Q ss_pred HHHHHHhccchhhcCcceEEEcCCCCcc
Q 039862 109 LRKWLKDNVSAEVAASTRIIYGGSVNGA 136 (173)
Q Consensus 109 Ir~~~~~~~~~~~~~~i~ilYGGSV~~~ 136 (173)
|++.+ ..+..|++|-.++++
T Consensus 291 i~~~~--------~~~~~Ii~G~~~d~~ 310 (349)
T TIGR00065 291 ITSEL--------DQDANIIWGAIIDPN 310 (349)
T ss_pred HHHhc--------CCCCeEEEEEeeCcc
Confidence 88874 345779999877765
No 418
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.21 E-value=4.1e+02 Score=21.96 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=14.2
Q ss_pred cchhhcCCCEEEEccc
Q 039862 2 EMLVNLSIPWVILGHS 17 (173)
Q Consensus 2 ~mLkd~G~~~viiGHS 17 (173)
+.|-++|++++.+||.
T Consensus 27 ~~L~~~Gv~~iE~g~p 42 (259)
T cd07939 27 RALDEAGVDEIEVGIP 42 (259)
T ss_pred HHHHHcCCCEEEEecC
Confidence 5688999999999985
No 419
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=24.18 E-value=1.5e+02 Score=21.52 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 039862 32 DKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 111 (173)
Q Consensus 32 ~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~ 111 (173)
+|..+++.+.|.|++=||.. |-|..+ ..|++..|..=. +=++-| + .+ ++++..++...|-+
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~------Glt~~v-i~ei~~aL~~hE-LIKVkv------l--~~---~~~~~~e~a~~i~~ 66 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKN------GLTEGV-IKEIEQALEHRE-LIKVKV------A--TE---DREDKTLIAEALVK 66 (95)
T ss_pred HHHHHHHhCCCCCeEEECCC------CCCHHH-HHHHHHHHHhCC-cEEEEe------c--CC---ChhHHHHHHHHHHH
Confidence 67889999999999999975 455544 567777776311 222322 1 11 14555566666555
Q ss_pred HHHhccchhhcCcceEEEcCC
Q 039862 112 WLKDNVSAEVAASTRIIYGGS 132 (173)
Q Consensus 112 ~~~~~~~~~~~~~i~ilYGGS 132 (173)
......=+.. ..+-+||=.+
T Consensus 67 ~~~a~~Vq~i-G~~~vlYR~~ 86 (95)
T TIGR00253 67 ETGACNVQVI-GKTIVLYRPT 86 (95)
T ss_pred HHCCEEEEEE-ccEEEEEecC
Confidence 4432221111 2355778665
No 420
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=24.15 E-value=2e+02 Score=26.27 Aligned_cols=61 Identities=18% Similarity=0.398 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEE---EcCCCCcccHHHHhcC--------CCCCEEEeecccCChH
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRII---YGGSVNGANCKELAAQ--------PDVDGFLVGGASLKPE 160 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il---YGGSV~~~n~~~~~~~--------~~vDG~LiG~asl~~~ 160 (173)
.+.++.+.+++++++.. +..-.....-|. |||---|.=+..+... .++-|++||..-.++.
T Consensus 142 ~~~a~~~~~fl~~f~~~-~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 142 ISEVKRTHEFLQKWLSR-HPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMD 213 (433)
T ss_pred HHHHHHHHHHHHHHHHh-ChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCch
Confidence 35667899999999854 443223333333 8888888877777652 3677999999877653
No 421
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=24.13 E-value=27 Score=23.95 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCHH
Q 039862 26 SNDFVGDKVAYALSRGLKVIACVGETLE 53 (173)
Q Consensus 26 ~~~~i~~Kv~~al~~gl~pIlCvGE~~~ 53 (173)
.+..+.+|++.|...|..-++.||+.+.
T Consensus 37 ~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 37 SDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp SSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred CCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 4456889999999999999999998653
No 422
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.04 E-value=1.4e+02 Score=22.81 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=33.4
Q ss_pred cchhhcCCCEEEE--c-cccc----------ccccCCCHHHHHHHHHHHHHCCCeEEE--EeC
Q 039862 2 EMLVNLSIPWVIL--G-HSER----------RALLNESNDFVGDKVAYALSRGLKVIA--CVG 49 (173)
Q Consensus 2 ~mLkd~G~~~vii--G-HSER----------R~~~~E~~~~i~~Kv~~al~~gl~pIl--CvG 49 (173)
++||+++++.+++ + |.-. -..++ .+.+..-+++|-+.||.++. |++
T Consensus 7 ~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 7 DTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 6899999999999 3 3211 11223 46788899999999999985 444
No 423
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.00 E-value=4.4e+02 Score=22.19 Aligned_cols=138 Identities=22% Similarity=0.193 Sum_probs=65.8
Q ss_pred chhhc-CCCEEE-EcccccccccC-CCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCC
Q 039862 3 MLVNL-SIPWVI-LGHSERRALLN-ESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD 79 (173)
Q Consensus 3 mLkd~-G~~~vi-iGHSERR~~~~-E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~ 79 (173)
.|.+. |+++++ .||+=.=..+. |.-..+.+.+..+....+..|.++|... +.+.+ ++.+.+.+ ..-
T Consensus 29 ~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~-------~~~ai-~~a~~a~~---~Ga 97 (288)
T cd00954 29 YLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLN-------LKESQ-ELAKHAEE---LGY 97 (288)
T ss_pred HHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCC-------HHHHH-HHHHHHHH---cCC
Confidence 34566 999974 45532211121 1112233334444445677778888642 22222 22222211 112
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcce-EEE------cCCCCcccHHHHhcCCCCCEEEe
Q 039862 80 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTR-IIY------GGSVNGANCKELAAQPDVDGFLV 152 (173)
Q Consensus 80 ~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~-ilY------GGSV~~~n~~~~~~~~~vDG~Li 152 (173)
.-++..=|.|. .++.+.+.+-.+.|-+. ..++| ++| |-.++++-..+++..++|=|+=-
T Consensus 98 d~v~~~~P~y~-----~~~~~~i~~~~~~v~~a---------~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~ 163 (288)
T cd00954 98 DAISAITPFYY-----KFSFEEIKDYYREIIAA---------AASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKF 163 (288)
T ss_pred CEEEEeCCCCC-----CCCHHHHHHHHHHHHHh---------cCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEe
Confidence 33445556651 24555544433333221 10234 334 66788888888888777755544
Q ss_pred ecccCCh-HHHHHHHH
Q 039862 153 GGASLKP-EFIDIIKS 167 (173)
Q Consensus 153 G~asl~~-~f~~Ii~~ 167 (173)
.+ -+. .|..+++.
T Consensus 164 s~--~d~~~~~~~~~~ 177 (288)
T cd00954 164 TA--TDLYDLERIRAA 177 (288)
T ss_pred CC--CCHHHHHHHHHh
Confidence 32 232 25555543
No 424
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=24.00 E-value=69 Score=28.67 Aligned_cols=32 Identities=34% Similarity=0.334 Sum_probs=23.6
Q ss_pred ccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 16 HSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 16 HSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
|||+- +..+...++++.|.+.|= .|+|||.|.
T Consensus 226 H~E~~----~I~~~ta~~i~~ak~~G~-rIiAVGTT~ 257 (342)
T PRK00147 226 HSEWY----EVPQETADAINAAKARGG-RVIAVGTTS 257 (342)
T ss_pred ccEEE----EECHHHHHHHHHHHHcCC-eEEEEcccc
Confidence 66663 344556677899998876 599999985
No 425
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.85 E-value=1.4e+02 Score=25.18 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=19.1
Q ss_pred chhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEE
Q 039862 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIA 46 (173)
Q Consensus 3 mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIl 46 (173)
|++++++++++.=-| |.+ -...|+.+|.+.|+..|+
T Consensus 185 L~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv 220 (248)
T PRK08057 185 LLRQHRIDVVVTKNS------GGA--GTEAKLEAARELGIPVVM 220 (248)
T ss_pred HHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE
Confidence 555666666654333 222 344566666666665443
No 426
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.85 E-value=5.7e+02 Score=23.46 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHCCCeEEEE-eCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHH
Q 039862 29 FVGDKVAYALSRGLKVIAC-VGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHA 107 (173)
Q Consensus 29 ~i~~Kv~~al~~gl~pIlC-vGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~ 107 (173)
.+.+=+++|-+.|..-++. -|-...........+.+.+.|..++.. ...+.|+-|..+--|+-.-.+++++.++++
T Consensus 219 ~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~---~~gV~IlLENmag~g~~lG~~~eeL~~Iid 295 (413)
T PTZ00372 219 AFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEE---TKSVIIVLENTAGQKNSVGSKFEDLRDIIA 295 (413)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhC---cCCCEEEEecCCCCCCcccCCHHHHHHHHH
Confidence 3455578888888886554 665321100011233444445554442 334788999998777777788999999888
Q ss_pred HHH
Q 039862 108 ELR 110 (173)
Q Consensus 108 ~Ir 110 (173)
.++
T Consensus 296 ~v~ 298 (413)
T PTZ00372 296 LVE 298 (413)
T ss_pred hcC
Confidence 775
No 427
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.74 E-value=2e+02 Score=23.51 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=35.5
Q ss_pred CcceEEE-cCCCCcccHHHHhcCCCCCEEEeecccCC--hHHHHHHHHHhh
Q 039862 123 ASTRIIY-GGSVNGANCKELAAQPDVDGFLVGGASLK--PEFIDIIKSATV 170 (173)
Q Consensus 123 ~~i~ilY-GGSV~~~n~~~~~~~~~vDG~LiG~asl~--~~f~~Ii~~~~~ 170 (173)
....++| |-.|.+++..+.+.+.+.|-+.+...... +.+.++++.+.+
T Consensus 115 ~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 115 NGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHh
Confidence 4578888 66799999999999999998888543322 347777766654
No 428
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=23.52 E-value=2e+02 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=26.3
Q ss_pred cceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 124 STRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 124 ~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
...+++||.+- +.+.+++...++|-+.+|+....
T Consensus 82 ~~~~~~g~~~~-~~I~~~a~~~~~dlIV~Gs~g~~ 115 (146)
T cd01989 82 EDVVLEDDDVA-KAIVEYVADHGITKLVMGASSDN 115 (146)
T ss_pred EEEEEeCCcHH-HHHHHHHHHcCCCEEEEeccCCC
Confidence 34566787654 55788889999999999987765
No 429
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=23.47 E-value=75 Score=27.10 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=42.9
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHh
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE 73 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~ 73 (173)
+..+++|.++|.|-----.. +.+.-.+=++.+.+.|++++-=||-.........+.+.+.+|++..|.
T Consensus 91 ~~~k~lGf~~IEiSdGti~l----~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 91 EECKELGFDAIEISDGTIDL----PEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLE 158 (244)
T ss_dssp HHHHHCT-SEEEE--SSS-------HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEecCCceeC----CHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHH
Confidence 35788999998874321111 111122237889999999999999877776666667788888888776
No 430
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=23.21 E-value=4.7e+02 Score=23.38 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCCCcc----cHHHHhcCCCCCEEEeecccCC---hHHHHHHHHHh
Q 039862 131 GSVNGA----NCKELAAQPDVDGFLVGGASLK---PEFIDIIKSAT 169 (173)
Q Consensus 131 GSV~~~----n~~~~~~~~~vDG~LiG~asl~---~~f~~Ii~~~~ 169 (173)
|+..++ -++++.+ .+.||+-|||-++- +++.++++.+.
T Consensus 186 Gg~~~dLR~~sa~~l~~-~~~~G~aIGGl~~ge~~~~~~~iv~~~~ 230 (368)
T TIGR00430 186 GGTYEDLRSQSAEGLIE-LDFPGYAIGGLSVGEPKEDMLRILEHTA 230 (368)
T ss_pred CCCCHHHHHHHHHHHHH-CCCCeeEeCCccCCCCHHHHHHHHHHHH
Confidence 444444 3444444 58999999997663 23888887653
No 431
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=23.05 E-value=2.9e+02 Score=25.03 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCE------EEeeccc
Q 039862 93 TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDG------FLVGGAS 156 (173)
Q Consensus 93 tG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG------~LiG~as 156 (173)
||. +++++.....+++=+++++......+.++ ++||=|....=+.+.+++...|| ++|=+.+
T Consensus 186 ~G~-~s~~dLv~~~~a~v~yL~d~~~G~ka~~I-i~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRs 253 (365)
T PF05677_consen 186 TGP-PSRKDLVKDYQACVRYLRDEEQGPKAKNI-ILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRS 253 (365)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHhcccCCChheE-EEeeccccHHHHHHHHHhcccccCCCeeEEEEecCC
Confidence 444 47888887788877787753321223444 88987777766666666554444 5665444
No 432
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=22.98 E-value=74 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=22.9
Q ss_pred ccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 16 HSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 16 HSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
|||+-. ..+....++..|.+.|= .|+|||.|.
T Consensus 227 H~E~~~----v~~~ta~~i~~ak~~G~-RIiAVGTT~ 258 (344)
T TIGR00113 227 HAEYYE----VPQETVEALNKTRENGG-RIIAVGTTS 258 (344)
T ss_pred ccEEEE----ECHHHHHHHHHHHHcCC-eEEEEccce
Confidence 666633 34455677888988876 599999985
No 433
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=22.94 E-value=1.2e+02 Score=25.45 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=14.8
Q ss_pred HHhcCCCCCEEEeeccc-CChH-HHHHHHHH
Q 039862 140 ELAAQPDVDGFLVGGAS-LKPE-FIDIIKSA 168 (173)
Q Consensus 140 ~~~~~~~vDG~LiG~as-l~~~-f~~Ii~~~ 168 (173)
+.+...+.|.+||||.. ...+ ..++++.+
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~i 56 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEENVDELVKAI 56 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchHHHHHHHHHH
Confidence 44455666666666654 4432 44444333
No 434
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=22.91 E-value=1.2e+02 Score=22.31 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhccchhhcCcceEE
Q 039862 96 VATPAQAQEVHAELRKWLKDNVSAEVAASTRII 128 (173)
Q Consensus 96 ~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il 128 (173)
.|+..++.+.++.||+.+.+.||-..-..++++
T Consensus 72 ~Ata~dv~~Li~~v~~~V~~~~Gi~Le~Ev~~i 104 (105)
T PF02873_consen 72 GATAADVLALIEEVRERVKEKFGIELEPEVRII 104 (105)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHS--B-BSSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCeeeeccEEe
Confidence 478999999999999999999986655555543
No 435
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=22.82 E-value=79 Score=22.11 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=12.9
Q ss_pred cCcceEEEcCCCCccc
Q 039862 122 AASTRIIYGGSVNGAN 137 (173)
Q Consensus 122 ~~~i~ilYGGSV~~~n 137 (173)
.++.+++|+|.+-.++
T Consensus 41 ~dqQrLIy~GKiL~D~ 56 (75)
T cd01815 41 PELIDLIHCGRKLKDD 56 (75)
T ss_pred hHHeEEEeCCcCCCCC
Confidence 5678999999997655
No 436
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=22.74 E-value=64 Score=21.27 Aligned_cols=31 Identities=10% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccchhhcCcceEEEcCCCCccc
Q 039862 106 HAELRKWLKDNVSAEVAASTRIIYGGSVNGAN 137 (173)
Q Consensus 106 ~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n 137 (173)
+..+|+.+.+.++- ..++.+++|+|.+=.++
T Consensus 22 V~~lK~~I~~~~~i-~~~~~~Li~~Gk~L~d~ 52 (71)
T cd01808 22 VKDFKEAVSKKFKA-NQEQLVLIFAGKILKDT 52 (71)
T ss_pred HHHHHHHHHHHhCC-CHHHEEEEECCeEcCCC
Confidence 44455555555542 35678999999987665
No 437
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.73 E-value=1.8e+02 Score=24.89 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=32.7
Q ss_pred cceEEEcCCCCccc------HHHHhcCCCCCEEEe------------ecccCChH-HHHHHHHHh
Q 039862 124 STRIIYGGSVNGAN------CKELAAQPDVDGFLV------------GGASLKPE-FIDIIKSAT 169 (173)
Q Consensus 124 ~i~ilYGGSV~~~n------~~~~~~~~~vDG~Li------------G~asl~~~-f~~Ii~~~~ 169 (173)
.+||++|-|=..++ +...+...|.||++| |..+|.++ |.++++.+.
T Consensus 184 ~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~ 248 (250)
T PRK13397 184 DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELW 248 (250)
T ss_pred CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHHHHHHHHHHhc
Confidence 48899988844553 233344678999999 66777765 888888764
No 438
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=22.68 E-value=2.1e+02 Score=23.43 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=54.5
Q ss_pred eEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHH-HHHHHHHHHHHHhccchhh
Q 039862 43 KVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQA-QEVHAELRKWLKDNVSAEV 121 (173)
Q Consensus 43 ~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i-~~~~~~Ir~~~~~~~~~~~ 121 (173)
-||+|+|.+.-.-.-....+.-.+-| +++..+.+.-.+ -.+|.|.-..|+-+ .++.+++|++
T Consensus 77 Gpi~~fp~~~lSW~v~~fedIt~dSL-slF~tlePkidl-------LIvG~Gd~~~p~~v~~~V~~F~k~~--------- 139 (196)
T KOG3363|consen 77 GPILCFPNLLLSWSVRTFEDITTDSL-SLFQTLEPKIDL-------LIVGCGDKKHPDKVRPSVRQFVKSH--------- 139 (196)
T ss_pred ecceecccceeeccCCChhhcCcchH-hHhhhcCCCccE-------EEEecCCcCCchhcCHHHHHHHHHh---------
Confidence 38999998864332222222222222 233332221122 34788888767655 3455566554
Q ss_pred cCcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCC
Q 039862 122 AASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 158 (173)
Q Consensus 122 ~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~ 158 (173)
.-++-+ |..+||..-++-.+-.|=.||-|-+-
T Consensus 140 ki~lEi-----~dte~A~aTfNfLNaEgR~VaaAL~P 171 (196)
T KOG3363|consen 140 KIKLEI-----VDTENAAATFNFLNAEGRYVAAALLP 171 (196)
T ss_pred CcceEE-----ecchhhhhHhhhccccccEEEEEecC
Confidence 222333 57899999999999999999877554
No 439
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.46 E-value=3.5e+02 Score=20.42 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=65.0
Q ss_pred cchhhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHC-CCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCC
Q 039862 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSR-GLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDN 80 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~-gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~ 80 (173)
+.|.+.|++.++++. +. -+.+...... .+..++.+|..... ...+...++.+.+.+ ..-
T Consensus 20 ~~~~~~gv~gi~~~g-----------~~-i~~~~~~~~~~~~~v~~~v~~~~~~----~~~~~~~~~a~~a~~----~Ga 79 (201)
T cd00945 20 DEAIEYGFAAVCVNP-----------GY-VRLAADALAGSDVPVIVVVGFPTGL----TTTEVKVAEVEEAID----LGA 79 (201)
T ss_pred HHHHHhCCcEEEECH-----------HH-HHHHHHHhCCCCCeEEEEecCCCCC----CcHHHHHHHHHHHHH----cCC
Confidence 356678898888876 22 2334444433 56667778875311 112223344444433 112
Q ss_pred eEEEEcccccccCCCCCC--HHHHHHHHHHHHHHHHhccchhhcCcceEE-E---cCCCCcccHHHH---hcCCCCCEEE
Q 039862 81 VVLAYEPVWAIGTGKVAT--PAQAQEVHAELRKWLKDNVSAEVAASTRII-Y---GGSVNGANCKEL---AAQPDVDGFL 151 (173)
Q Consensus 81 iiIAYEPvwAIGtG~~a~--~e~i~~~~~~Ir~~~~~~~~~~~~~~i~il-Y---GGSV~~~n~~~~---~~~~~vDG~L 151 (173)
..+..-|.|- ..++ ++.+.+..+.|++.. ..++|++ | +..++++...++ +..+++|++=
T Consensus 80 d~i~v~~~~~----~~~~~~~~~~~~~~~~i~~~~--------~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK 147 (201)
T cd00945 80 DEIDVVINIG----SLKEGDWEEVLEEIAAVVEAA--------DGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIK 147 (201)
T ss_pred CEEEEeccHH----HHhCCCHHHHHHHHHHHHHHh--------cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 2333334441 1122 444444444444431 0134443 2 333466665554 4568888886
Q ss_pred eecccC----Ch-HHHHHHHHH
Q 039862 152 VGGASL----KP-EFIDIIKSA 168 (173)
Q Consensus 152 iG~asl----~~-~f~~Ii~~~ 168 (173)
...... +. .|..|.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 148 TSTGFGGGGATVEDVKLMKEAV 169 (201)
T ss_pred eCCCCCCCCCCHHHHHHHHHhc
Confidence 655422 33 366665544
No 440
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=22.37 E-value=5.4e+02 Score=22.62 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=47.9
Q ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHH
Q 039862 22 LLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQ 101 (173)
Q Consensus 22 ~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~ 101 (173)
+|++.++.+ +..|.++|+.+++..+-+.+.-......+...+++-..+..- .+.-+-|-+|-+-.- .+.+.+.
T Consensus 61 ~~~~~~~~~---~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~-gfDGIdIDwE~p~~~---~~~d~~~ 133 (358)
T cd02875 61 IFGDIDDEL---LCYAHSKGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQ-FMDGINIDIEQPITK---GSPEYYA 133 (358)
T ss_pred ecCCCCHHH---HHHHHHcCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHh-CCCeEEEcccCCCCC---CcchHHH
Confidence 467766544 669999999999986545443222222333334444444322 256678888854221 1233444
Q ss_pred HHHHHHHHHHHHHh
Q 039862 102 AQEVHAELRKWLKD 115 (173)
Q Consensus 102 i~~~~~~Ir~~~~~ 115 (173)
....++.+|+.++.
T Consensus 134 ~t~llkelr~~l~~ 147 (358)
T cd02875 134 LTELVKETTKAFKK 147 (358)
T ss_pred HHHHHHHHHHHHhh
Confidence 45556666666543
No 441
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=22.37 E-value=83 Score=21.38 Aligned_cols=31 Identities=6% Similarity=0.013 Sum_probs=19.7
Q ss_pred HHHHHHHHHhccchhhcCcceEEEcCCCCccc
Q 039862 106 HAELRKWLKDNVSAEVAASTRIIYGGSVNGAN 137 (173)
Q Consensus 106 ~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n 137 (173)
+..+++.+.+..+ ...++.|++|+|.+-.++
T Consensus 24 V~~LK~~I~~~~~-~~~~~qrLi~~Gk~L~D~ 54 (73)
T cd01791 24 IGDLKKLIAAQTG-TRPEKIVLKKWYTIFKDH 54 (73)
T ss_pred HHHHHHHHHHHhC-CChHHEEEEeCCcCCCCC
Confidence 4444445544444 226788999999887655
No 442
>PRK06801 hypothetical protein; Provisional
Probab=22.37 E-value=3.3e+02 Score=23.57 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=66.5
Q ss_pred hhcCCCEEEEcccccccccCCCHHHHHHHHHHHHHCCCeEEE---EeCCCHHH-H--hcCChHHHHHHHHHHHHhccCCC
Q 039862 5 VNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIA---CVGETLEQ-R--ESGSTVAVVAEQTKAIAEKISNW 78 (173)
Q Consensus 5 kd~G~~~viiGHSERR~~~~E~~~~i~~Kv~~al~~gl~pIl---CvGE~~~~-r--~~~~~~~~l~~Ql~~~l~~v~~~ 78 (173)
-+.|.+.|++-.|.- -|.|+-+..++=++.|-..|+..=. +||-.+.. . ..+....---+|....... .
T Consensus 94 i~~GftSVm~D~S~l--~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~---t 168 (286)
T PRK06801 94 LRLGFSSVMFDGSTL--EYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDR---T 168 (286)
T ss_pred HHhCCcEEEEcCCCC--CHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHH---H
Confidence 367999999988753 3445544444445667778875322 23322111 0 0010000001222222211 2
Q ss_pred CCeEEEEcccccccCCC---C-CCHHHHHHHHHHHHHHHHhccchhhcCcce-EEEcCC-CCcccHHHHhcCCCCCEEEe
Q 039862 79 DNVVLAYEPVWAIGTGK---V-ATPAQAQEVHAELRKWLKDNVSAEVAASTR-IIYGGS-VNGANCKELAAQPDVDGFLV 152 (173)
Q Consensus 79 ~~iiIAYEPvwAIGtG~---~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~-ilYGGS-V~~~n~~~~~~~~~vDG~Li 152 (173)
.-..+|. +++...+-- + .+++.+++ |++.+ ++| ++-||| +..+|+.+..+ .|++++=|
T Consensus 169 gvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~----i~~~~----------~~PLVlHGGSgi~~e~~~~~i~-~Gi~KINv 232 (286)
T PRK06801 169 GIDALAV-AIGNAHGKYKGEPKLDFARLAA----IHQQT----------GLPLVLHGGSGISDADFRRAIE-LGIHKINF 232 (286)
T ss_pred CcCEEEe-ccCCCCCCCCCCCCCCHHHHHH----HHHhc----------CCCEEEECCCCCCHHHHHHHHH-cCCcEEEe
Confidence 2346777 554444322 1 34444333 33321 255 555775 66677766655 89999999
Q ss_pred ecccCC
Q 039862 153 GGASLK 158 (173)
Q Consensus 153 G~asl~ 158 (173)
++.-..
T Consensus 233 ~T~~~~ 238 (286)
T PRK06801 233 YTGMSQ 238 (286)
T ss_pred hhHHHH
Confidence 886544
No 443
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=22.33 E-value=2.6e+02 Score=20.52 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEeeccc
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 156 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~as 156 (173)
.+++...+..|++.|.+.++........+.-.||+..+.+.. ...|||=+++=...
T Consensus 2 ~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~GS~a~~T~i~--~~sDiD~~v~~~~~ 57 (143)
T cd05400 2 LEEAKERYREIREALKESLSELAGRVAEVFLQGSYARGTALR--GDSDIDLVVVLPDD 57 (143)
T ss_pred HhHHHHHHHHHHHHHHHhcccccccccEEEEEcceeCCCCCC--CCCceeEEEEEcCc
Confidence 466778888899999887753211245688899998776422 26889988875544
No 444
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=22.17 E-value=57 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhccchhhcCcceEEEcCCCCccc
Q 039862 105 VHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN 137 (173)
Q Consensus 105 ~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n 137 (173)
++..+|+.+.+..|-. +.+.+++|+|.+-.++
T Consensus 20 TV~~lK~~I~~~~gi~-~~~q~Li~~G~~L~D~ 51 (70)
T cd01794 20 TVGQLKKQLQAAEGVD-PCCQRWFFSGKLLTDK 51 (70)
T ss_pred hHHHHHHHHHHHhCCC-HHHeEEEECCeECCCC
Confidence 4556666666655533 5667899999987665
No 445
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=22.08 E-value=68 Score=21.03 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccchhhcCcceEEEcCCCCccc
Q 039862 105 VHAELRKWLKDNVSAEVAASTRIIYGGSVNGAN 137 (173)
Q Consensus 105 ~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n 137 (173)
++..+|+.+.+..|-. .++.+++|+|.+-.++
T Consensus 20 tV~~lK~~i~~~~gi~-~~~q~Li~~G~~L~d~ 51 (70)
T cd01798 20 DIKQLKEVVAKRQGVP-PDQLRVIFAGKELRNT 51 (70)
T ss_pred hHHHHHHHHHHHHCCC-HHHeEEEECCeECCCC
Confidence 4555566666555543 5678999999997665
No 446
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.80 E-value=3.2e+02 Score=24.67 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=45.2
Q ss_pred ccccCCCC----CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC-----cccHHHHhcCCCCCEEEeecccCCh
Q 039862 89 WAIGTGKV----ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN-----GANCKELAAQPDVDGFLVGGASLKP 159 (173)
Q Consensus 89 wAIGtG~~----a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~-----~~n~~~~~~~~~vDG~LiG~asl~~ 159 (173)
|.+.++.. -..+.+++..+.+.+.|.+. .+++++.+.++ ...+.+.++..++||+++.-....+
T Consensus 4 g~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~ 76 (452)
T cd00578 4 GFVTGSQHLYGEELLEQVEEYAREVADLLNEL-------PVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP 76 (452)
T ss_pred EEEEecccccChhHHHHHHHHHHHHHHHHhcC-------CceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc
Confidence 55555554 23455667777777776432 47899988887 2334567777799999997666653
Q ss_pred H--HHHHHH
Q 039862 160 E--FIDIIK 166 (173)
Q Consensus 160 ~--f~~Ii~ 166 (173)
+ ....++
T Consensus 77 ~~~~~~~~~ 85 (452)
T cd00578 77 AKMWIAGLS 85 (452)
T ss_pred HHHHHHHHH
Confidence 3 444443
No 447
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=21.72 E-value=1.2e+02 Score=20.01 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=21.9
Q ss_pred ccccCCCHHHHHHHHHHHHHCCCeEE
Q 039862 20 RALLNESNDFVGDKVAYALSRGLKVI 45 (173)
Q Consensus 20 R~~~~E~~~~i~~Kv~~al~~gl~pI 45 (173)
|.+.+.++....+|+..+|+.|..+.
T Consensus 7 r~lt~~d~~~fc~rVt~aL~~GW~l~ 32 (54)
T PF08410_consen 7 RVLTGPDDSAFCHRVTEALNEGWQLY 32 (54)
T ss_pred EEEECCChHHHHHHHHHHHHcCCEec
Confidence 55668888889999999999998875
No 448
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=21.66 E-value=3.9e+02 Score=21.34 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=40.6
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCC--cccHHHHhcCCCCCEEEeecccCChH-HHHH
Q 039862 94 GKV-ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVN--GANCKELAAQPDVDGFLVGGASLKPE-FIDI 164 (173)
Q Consensus 94 G~~-a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~--~~n~~~~~~~~~vDG~LiG~asl~~~-f~~I 164 (173)
|.| ..++.+.++++.+++. +-.+.+..-|... ++...+++. .+|.+.|+=-+.+++ +..+
T Consensus 74 GEPll~~~~~~~li~~~~~~---------g~~~~i~TNG~~~~~~~~~~~ll~--~~d~v~isl~~~~~~~~~~~ 137 (235)
T TIGR02493 74 GEPLLQPEFLSELFKACKEL---------GIHTCLDTSGFLGGCTEAADELLE--YTDLVLLDIKHFNPEKYKKL 137 (235)
T ss_pred cccccCHHHHHHHHHHHHHC---------CCCEEEEcCCCCCccHHHHHHHHH--hCCEEEEeCCCCCHHHHHHH
Confidence 776 6688777888888763 2245677778654 566677765 478888887677654 5443
No 449
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.55 E-value=1.7e+02 Score=26.79 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 99 PAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 99 ~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
++.+.++++.||+. | .+.+++-|+-.+.+.+..+.. .++|++-+|
T Consensus 178 ~~~~~~~v~~ik~~----~-----p~~~vi~g~V~T~e~a~~l~~-aGaD~I~vG 222 (404)
T PRK06843 178 STRIIELVKKIKTK----Y-----PNLDLIAGNIVTKEAALDLIS-VGADCLKVG 222 (404)
T ss_pred ChhHHHHHHHHHhh----C-----CCCcEEEEecCCHHHHHHHHH-cCCCEEEEC
Confidence 45555666666654 2 247789999999999888886 799999987
No 450
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.44 E-value=2.1e+02 Score=25.31 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=43.3
Q ss_pred ccCCCC--CCHHHHHHHHHHHHHHHHhccchhhcCcceEEE-cCCCCcccHHHHhcCCCCCEEEeecccCChH
Q 039862 91 IGTGKV--ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIY-GGSVNGANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 91 IGtG~~--a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilY-GGSV~~~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
+|.|.| .+++++.++.+.|++...-..+ ..+.+-- +++++.+....+ ...+++-+-+|==|++++
T Consensus 64 ~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~----~eit~e~np~~l~~e~l~~L-k~~Gv~risiGvqS~~~~ 131 (378)
T PRK05660 64 IGGGTPSLFSAEAIQRLLDGVRARLPFAPD----AEITMEANPGTVEADRFVGY-QRAGVNRISIGVQSFSEE 131 (378)
T ss_pred eCCCccccCCHHHHHHHHHHHHHhCCCCCC----cEEEEEeCcCcCCHHHHHHH-HHcCCCEEEeccCcCCHH
Confidence 466666 5689999999999886421111 1232222 578887765555 458999999998887765
No 451
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.42 E-value=4.8e+02 Score=21.69 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.8
Q ss_pred cchhhcCCCEEEEcccc
Q 039862 2 EMLVNLSIPWVILGHSE 18 (173)
Q Consensus 2 ~mLkd~G~~~viiGHSE 18 (173)
+.|.++|++++.+|+.-
T Consensus 27 ~~L~~~Gv~~iEvg~~~ 43 (268)
T cd07940 27 RQLDELGVDVIEAGFPA 43 (268)
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 46889999999999643
No 452
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=21.39 E-value=2.7e+02 Score=27.31 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=64.1
Q ss_pred cchhhcCCCEEEEc------ccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhcc
Q 039862 2 EMLVNLSIPWVILG------HSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI 75 (173)
Q Consensus 2 ~mLkd~G~~~viiG------HSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v 75 (173)
+++|.+|++.|-+| |.=+.-.|+=+..... =+..|.+.|+..|+|-|- ++-....+..+.-++|..-
T Consensus 37 ~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil~t~P------~g~~P~Wl~~~~PeiL~~~ 109 (673)
T COG1874 37 RKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEI-FLERAYKAGLYVILRTGP------TGAPPAWLAKKYPEILAVD 109 (673)
T ss_pred HHHHHhCCCeeEeeeEEeeccCccccccCcccchHH-HHHHHHhcCceEEEecCC------CCCCchHHhcCChhheEec
Confidence 57899999999996 5544444433322222 478999999999999984 3344555555554555421
Q ss_pred CC-CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 039862 76 SN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 113 (173)
Q Consensus 76 ~~-~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~ 113 (173)
.. ..+.-.+||+...... .--+.+..+.+.||+.+
T Consensus 110 ~~~~~~~~g~r~~~~~~~~---~Yr~~~~~i~~~irer~ 145 (673)
T COG1874 110 ENGRVRSDGARENICPVSP---VYREYLDRILQQIRERL 145 (673)
T ss_pred CCCcccCCCcccccccccH---HHHHHHHHHHHHHHHHH
Confidence 11 3345578887764432 34566677777888775
No 453
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.19 E-value=4e+02 Score=23.20 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=43.9
Q ss_pred ccCCCC--CCHHHHHHHHHHHHHHHHhccchhhcCcceE-EEcCCCCcccHHHHhcCCCCCEEEeecccCChH
Q 039862 91 IGTGKV--ATPAQAQEVHAELRKWLKDNVSAEVAASTRI-IYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 160 (173)
Q Consensus 91 IGtG~~--a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~i-lYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~ 160 (173)
+|.|.| .+++++.++.+.|++.+.-.. ...+.+ .-++.++.+.++.+ +..+++.+-+|==|.+++
T Consensus 57 ~GGGtPs~l~~~~l~~ll~~i~~~~~~~~----~~eitie~np~~lt~e~l~~l-~~~Gv~risiGvqS~~~~ 124 (360)
T TIGR00539 57 IGGGTPNTLSVEAFERLFESIYQHASLSD----DCEITTEANPELITAEWCKGL-KGAGINRLSLGVQSFRDD 124 (360)
T ss_pred eCCCchhcCCHHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCCCCHHHHHHH-HHcCCCEEEEecccCChH
Confidence 566665 668999999999987642111 123333 34788887775544 446999999998777765
No 454
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=21.12 E-value=2.8e+02 Score=20.36 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=5.9
Q ss_pred EEEcccccccccC
Q 039862 12 VILGHSERRALLN 24 (173)
Q Consensus 12 viiGHSERR~~~~ 24 (173)
+||+-.-....++
T Consensus 16 aIVn~~N~~~~~g 28 (133)
T cd03330 16 AIVNAANSRLRMG 28 (133)
T ss_pred EEEeCCCCCCCCC
Confidence 3454444444443
No 455
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.10 E-value=4.4e+02 Score=23.89 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhc-CCCCCEEEeecccCChHHHHHHHHH
Q 039862 103 QEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAA-QPDVDGFLVGGASLKPEFIDIIKSA 168 (173)
Q Consensus 103 ~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~-~~~vDG~LiG~asl~~~f~~Ii~~~ 168 (173)
+++.+.|++..... ....+.+|+-||..-.....+++. .|+||.++ |... ...+.+++..+
T Consensus 60 ~~~~~~i~~~~~~k---~~~p~~~vvv~Gc~a~~~~~~~~~~~p~vD~v~-g~~~-~~~~~~ll~~~ 121 (448)
T PRK14333 60 QKVYSYLGRQAKRK---HKNPDLTLVVAGCVAQQEGESLLRRVPELDLVM-GPQH-ANRLEDLLEQV 121 (448)
T ss_pred HHHHHHHHHHHHHH---hcCCCCEEEEECccCccCHHHHHhcCCCCCEEE-CCCC-HHHHHHHHHHH
Confidence 34556665542110 113467899999988888888884 68999987 4432 23355655543
No 456
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=20.92 E-value=2.4e+02 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
++.+.+.++++-|.+..+. + +++++ ||-++..+ .+.+.+..+|
T Consensus 92 ~~~~~l~~i~~Gi~~a~~~-~------g~~iv-GG~t~~~~------~~~i~vt~iG 134 (317)
T TIGR01379 92 LDEAWLEAFYDGLFECAKQ-Y------GVPLV-GGDTVSSP------ELVVTVTAIG 134 (317)
T ss_pred CCHHHHHHHHHHHHHHHHH-c------CCeEE-CccCCCCC------CcEEEEEEEE
Confidence 4577788888888887654 2 35544 66666555 3555555555
No 457
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.87 E-value=1.2e+02 Score=25.32 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=34.5
Q ss_pred CcceEEEcCCCCc--ccHHHHhcCCCCCEEEeecccCC-----h-HHHHHHHHH
Q 039862 123 ASTRIIYGGSVNG--ANCKELAAQPDVDGFLVGGASLK-----P-EFIDIIKSA 168 (173)
Q Consensus 123 ~~i~ilYGGSV~~--~n~~~~~~~~~vDG~LiG~asl~-----~-~f~~Ii~~~ 168 (173)
.+++++==|+|++ +|+.++++ .++.++=+|+.=.+ . +|..|-+.+
T Consensus 157 p~i~~~ptGGV~~~~~n~~~yl~-aGa~avg~Gs~L~~~~~~~~~~~~~i~~~a 209 (222)
T PRK07114 157 PWTKIMPTGGVEPTEENLKKWFG-AGVTCVGMGSKLIPKEALAAKDYAGIEQKV 209 (222)
T ss_pred CCCeEEeCCCCCcchhcHHHHHh-CCCEEEEEChhhcCccccccccHHHHHHHH
Confidence 4688999999998 89999999 88988888876332 2 366665544
No 458
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.60 E-value=4.8e+02 Score=21.34 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=30.9
Q ss_pred cchhhcCCCEEEEc--ccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHH
Q 039862 2 EMLVNLSIPWVILG--HSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQ 54 (173)
Q Consensus 2 ~mLkd~G~~~viiG--HSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~~~ 54 (173)
+.|+++|++.|=++ |+ |.=-.+-+...++...++||.. +-.|.+.++
T Consensus 69 ~~L~~~G~d~vslANNH~-----~D~G~~gl~~Tl~~L~~~gi~~-~Gag~~~~~ 117 (250)
T PF09587_consen 69 DALKDAGFDVVSLANNHI-----FDYGEEGLLDTLEALDKAGIPY-VGAGRNLEE 117 (250)
T ss_pred HHHHHcCCCEEEecCCCC-----ccccHHHHHHHHHHHHHCCCcE-eECcCChHH
Confidence 57899999998764 76 2222344556677888888765 345566543
No 459
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=20.57 E-value=2.1e+02 Score=22.82 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 039862 60 TVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 112 (173)
Q Consensus 60 ~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~ 112 (173)
..+.+.+|++.+++. .|+-+|-+|...+++.++.+.+.+++.
T Consensus 52 ~~~~~~~~l~~~~~~-----------~~~~~i~~G~l~~~~~~~~i~~~~~~~ 93 (242)
T cd01169 52 PPEFVAAQLDAVLED-----------IPVDAIKIGMLGSAEIIEAVAEALKDY 93 (242)
T ss_pred CHHHHHHHHHHHHhC-----------CCCCEEEECCCCCHHHHHHHHHHHHhC
Confidence 457788999887752 256777788888899888888887653
No 460
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=20.56 E-value=2.8e+02 Score=26.42 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhc--cchhhcCcceEEEcCCCCc-
Q 039862 59 STVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDN--VSAEVAASTRIIYGGSVNG- 135 (173)
Q Consensus 59 ~~~~~l~~Ql~~~l~~v~~~~~iiIAYEPvwAIGtG~~a~~e~i~~~~~~Ir~~~~~~--~~~~~~~~i~ilYGGSV~~- 135 (173)
+.++++..||..++...+ ..++-|-+ | ...+++++.++.+.++..-... ++....++ +..|--|-.
T Consensus 365 ~~~~~f~~QlrAilra~~-~G~~~Im~-P-------mV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~mIE~p 433 (575)
T PRK11177 365 DRKEILHDQLRAILRASA-FGKLRIMF-P-------MIISVEEVRELKAEIEILKQELRDEGKAFDES--IEIGVMVETP 433 (575)
T ss_pred CCHHHHHHHHHHHHHHHc-CCCcEEEE-c-------CCCCHHHHHHHHHHHHHHHHHHHHhccccCCC--cEEEEEEeCH
Confidence 356899999999887433 34544444 4 3568999888777776543322 22221222 344544432
Q ss_pred ---ccHHHHhcCCCCCEEEeecccC
Q 039862 136 ---ANCKELAAQPDVDGFLVGGASL 157 (173)
Q Consensus 136 ---~n~~~~~~~~~vDG~LiG~asl 157 (173)
.|+.+++ .++|++.||..-|
T Consensus 434 ~a~~~~d~i~--~~vDf~sIGtnDL 456 (575)
T PRK11177 434 AAAVIARHLA--KEVDFFSIGTNDL 456 (575)
T ss_pred HHHHhHHHHH--hhCCEEEECcHHH
Confidence 3567777 4899999997544
No 461
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.47 E-value=1.1e+02 Score=25.29 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=34.5
Q ss_pred CcceEEEcCCCCcccHHHHhcCCCCCEEEeecccCCh------HHHHHHHHHh
Q 039862 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP------EFIDIIKSAT 169 (173)
Q Consensus 123 ~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~------~f~~Ii~~~~ 169 (173)
.++|++==|+|+++|+.++++ .+..++-+|+.=.+. +|..|-+.+.
T Consensus 147 p~i~~~ptGGV~~~N~~~~l~-aGa~~vg~Gs~L~~~~~~~~~~~~~i~~~a~ 198 (204)
T TIGR01182 147 PQVRFCPTGGINLANVRDYLA-APNVACGGGSWLVPKDLIAAGDWDEITRLAR 198 (204)
T ss_pred CCCcEEecCCCCHHHHHHHHh-CCCEEEEEChhhcCchhhccccHHHHHHHHH
Confidence 468999999999999999998 677777777754431 3766665543
No 462
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=20.40 E-value=98 Score=23.46 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhccch------hhcCcceEEEcCCCCccc
Q 039862 103 QEVHAELRKWLKDNVSA------EVAASTRIIYGGSVNGAN 137 (173)
Q Consensus 103 ~~~~~~Ir~~~~~~~~~------~~~~~i~ilYGGSV~~~n 137 (173)
..++..+++.+.+..+. ...++.+++|.|-|=.++
T Consensus 25 sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~ 65 (113)
T cd01814 25 ATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENS 65 (113)
T ss_pred hhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCC
Confidence 44566666666544432 225678999999998765
No 463
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=20.27 E-value=2.3e+02 Score=24.06 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEEEee
Q 039862 97 ATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153 (173)
Q Consensus 97 a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~LiG 153 (173)
++++.++++.+-|++..++ | +++| -||.++..+ ..+.+++..+|
T Consensus 96 p~~e~l~~i~~Gi~~a~~~-~------gi~i-vGGdt~~~~-----~~~~i~vt~iG 139 (283)
T cd02192 96 PSAEAAAQVLEGMRDAAEK-F------GVPI-VGGHTHPDS-----PYNALSVAILG 139 (283)
T ss_pred CCHHHHHHHHHHHHHHHHH-c------CCcE-ecccCCCCC-----CCCeEEEEEEE
Confidence 3678899999999887654 3 3655 677776543 23445555555
No 464
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.25 E-value=1.6e+02 Score=23.66 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhccchhhcCcceEEEcCCCCcccHHHHhcCCCCCEE
Q 039862 90 AIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGF 150 (173)
Q Consensus 90 AIGtG~~a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~ilYGGSV~~~n~~~~~~~~~vDG~ 150 (173)
++-.-.+.+.+.+.++++.+|+. ....+++|+.||..- ..++...-+.|+.
T Consensus 140 ~lS~~~~~~~~~~~~~i~~l~~~-------~~~~~v~i~vGG~~~---~~~~~~~~gad~~ 190 (197)
T TIGR02370 140 TGSALMTTTMYGQKDINDKLKEE-------GYRDSVKFMVGGAPV---TQDWADKIGADVY 190 (197)
T ss_pred EEccccccCHHHHHHHHHHHHHc-------CCCCCCEEEEEChhc---CHHHHHHhCCcEE
No 465
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.20 E-value=2.9e+02 Score=24.35 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=42.6
Q ss_pred ccCCCC--CCHHHHHHHHHHHHHHHHhccchhhcCcceE-EEcCCCCcccHHHHhcCCCCCEEEeecccCChHH
Q 039862 91 IGTGKV--ATPAQAQEVHAELRKWLKDNVSAEVAASTRI-IYGGSVNGANCKELAAQPDVDGFLVGGASLKPEF 161 (173)
Q Consensus 91 IGtG~~--a~~e~i~~~~~~Ir~~~~~~~~~~~~~~i~i-lYGGSV~~~n~~~~~~~~~vDG~LiG~asl~~~f 161 (173)
+|.|.| .+++++.++...|++.+.. ...+.+ ....+++.+.+..+. ..+++-+-+|==|.+++.
T Consensus 62 ~GGGTPs~L~~~~l~~ll~~i~~~~~~------~~eitiE~nP~~lt~e~l~~lk-~~G~nrisiGvQS~~d~v 128 (353)
T PRK05904 62 LGGGTPNCLNDQLLDILLSTIKPYVDN------NCEFTIECNPELITQSQINLLK-KNKVNRISLGVQSMNNNI 128 (353)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcCC------CCeEEEEeccCcCCHHHHHHHH-HcCCCEEEEecccCCHHH
Confidence 566655 6899999999999887421 112322 346677766654444 468999999877766543
No 466
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=20.16 E-value=1.5e+02 Score=28.20 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=27.6
Q ss_pred HHHHHHCCCeEEEEeCCCHHHHhcCChHHHHHHHHHHHHhccC
Q 039862 34 VAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS 76 (173)
Q Consensus 34 v~~al~~gl~pIlCvGE~~~~r~~~~~~~~l~~Ql~~~l~~v~ 76 (173)
++.|++.||+||++|--.. |-..+ .+.+..|.-.++..+.
T Consensus 113 lkKAl~~gL~PIVVvNKiD--rp~Ar-p~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 113 LKKALALGLKPIVVINKID--RPDAR-PDEVVDEVFDLFVELG 152 (603)
T ss_pred HHHHHHcCCCcEEEEeCCC--CCCCC-HHHHHHHHHHHHHHhC
Confidence 6889999999999998763 43334 4455566655665554
No 467
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=20.08 E-value=1.1e+02 Score=27.56 Aligned_cols=32 Identities=38% Similarity=0.394 Sum_probs=23.6
Q ss_pred ccccccccCCCHHHHHHHHHHHHHCCCeEEEEeCCCH
Q 039862 16 HSERRALLNESNDFVGDKVAYALSRGLKVIACVGETL 52 (173)
Q Consensus 16 HSERR~~~~E~~~~i~~Kv~~al~~gl~pIlCvGE~~ 52 (173)
|||. -|..+....+++.+.+.|=. |+|||.|.
T Consensus 228 H~E~----~~v~~eta~~i~~~k~~GgR-IiaVGTTs 259 (348)
T COG0809 228 HSEY----YEVPQETADAINAAKARGGR-IIAVGTTS 259 (348)
T ss_pred chhh----eecCHHHHHHHHHHHHcCCe-EEEEcchh
Confidence 5554 34556667778999888855 89999985
Done!