RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 039862
(173 letters)
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
Length = 253
Score = 349 bits (896), Expect = e-124
Identities = 155/173 (89%), Positives = 163/173 (94%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AEMLVNL IPWVILGHSERRALL ESN+FVGDKVAYALS+GLKVIACVGETLEQRESGST
Sbjct: 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGST 140
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
+ VVA QTKAIA+K+S+W NVVLAYEPVWAIGTGKVATPAQAQEVH ELRKWL NVS E
Sbjct: 141 MDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPE 200
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 173
VAA+TRIIYGGSV GANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK+
Sbjct: 201 VAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKS 253
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 291 bits (747), Expect = e-101
Identities = 116/174 (66%), Positives = 138/174 (79%), Gaps = 2/174 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AEML +L I W ILGHSERR E+N+ V KV AL GLKVI C+GETLE+RE+G T
Sbjct: 82 AEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQT 141
Query: 61 VAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
V+++Q +AI +K+S+ WDN+V+AYEPVWAIGTGKVATP QAQEVHA +RKWL + V
Sbjct: 142 SDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVG 201
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 172
A+VA +TRIIYGGSVN NCKEL QPD+DGFLVGGASLKP+F+DIIKSA K
Sbjct: 202 ADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLKPDFVDIIKSAEQSK 255
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 259 bits (665), Expect = 5e-89
Identities = 97/167 (58%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AEML + +VI+GHSERR E+++ V KV AL GL I CVGETLE+RE+G T
Sbjct: 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKT 136
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
VVA Q A+ + + VV+AYEPVWAIGTGK A+P QAQEVHA +RK L + E
Sbjct: 137 EEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYG-E 195
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIK 166
VA RI+YGGSVN N EL AQPD+DG LVGGASLK E F+DIIK
Sbjct: 196 VAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESFLDIIK 242
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional.
Length = 250
Score = 246 bits (631), Expect = 1e-83
Identities = 97/171 (56%), Positives = 118/171 (69%), Gaps = 4/171 (2%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AEML +L + +VI+GHSERR E+++ V KV AL GL I CVGETLE+RE+G T
Sbjct: 79 AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKT 138
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VVA Q +A +S + N+V+AYEPVWAIGTGK ATP QAQEVHA +R L +
Sbjct: 139 EEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG 198
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
EVA RI+YGGSV N EL AQPD+DG LVGGASLK E F+ I+K+A
Sbjct: 199 -EVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAEDFLAIVKAA 248
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase.
Length = 242
Score = 239 bits (613), Expect = 3e-81
Identities = 99/167 (59%), Positives = 121/167 (72%), Gaps = 3/167 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AEML +L + +VI+GHSERR E+++ V KV AL GL + CVGETLE+RE+G T
Sbjct: 77 AEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKNGLTPVLCVGETLEEREAGKT 136
Query: 61 VAVVAEQTKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSA 119
+ V+ Q KAI + W N+++AYEPVWAIGTGKVATP QAQEVHA +RK+L + S
Sbjct: 137 LEVLKRQLKAILAGLDEEWKNLIIAYEPVWAIGTGKVATPEQAQEVHAFIRKYLAEL-SK 195
Query: 120 EVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 165
EVA RI+YGGSVN N EL AQPD+DGFLVGGASLK E F+ II
Sbjct: 196 EVAEEVRILYGGSVNPDNAAELLAQPDIDGFLVGGASLKAESFLAII 242
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 218 bits (557), Expect = 1e-72
Identities = 87/169 (51%), Positives = 113/169 (66%), Gaps = 3/169 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AEML +L +V++GHSERR E+++ + KV A GL I CVGETLE+RE+G T
Sbjct: 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKT 140
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
+ V+ Q A +S N+V+AYEPVWAIGTGK A+PA A+EVHA +R L + AE
Sbjct: 141 LEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE 200
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
RI+YGGSV N ELAAQPD+DG LVGGASLK + F+ I+++
Sbjct: 201 --EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILEAL 247
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 214 bits (545), Expect = 5e-70
Identities = 111/172 (64%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Query: 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV 61
E L +L WVILGHSERR ++ E ++F+G K AYALS GL VIAC+GE LE+RE+G T
Sbjct: 141 EQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTF 200
Query: 62 AVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV 121
V Q KA A+ + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH +R WLK NVS EV
Sbjct: 201 DVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEV 260
Query: 122 AASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 172
A+ TRIIYGGSVNG N ELA + D+DGFLVGGASLK PEF I+ S T KK
Sbjct: 261 ASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 188 bits (478), Expect = 8e-57
Identities = 91/173 (52%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVA 62
ML + + +VI+GHSERR E+++ V KV AL GL I CVGETL++RESG T
Sbjct: 476 MLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFD 535
Query: 63 VVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNV 117
VV Q KA AE++ VV+AYEPVWAIGTGKVATP QAQEVHA +RK + +
Sbjct: 536 VVRLQLKAALNGLSAEQVKK---VVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELY 592
Query: 118 SAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAT 169
E A RI+YGGSV N L QPD+DG LVGGASLK EF I
Sbjct: 593 GEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASLKAQEFAAIANYFI 645
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional.
Length = 260
Score = 176 bits (448), Expect = 6e-56
Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 4/171 (2%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
+ML + +VI+GHSERR + E+++ V +K A A GL I CVGE+ RE+ T
Sbjct: 88 GQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRT 147
Query: 61 VAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
V+AE+ + EK +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS
Sbjct: 148 FEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VS 206
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 168
+ + RI+YGGSV +N +L AQPDVDG L+GGASL EF+ + A
Sbjct: 207 PFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSLCTIA 257
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 146 bits (369), Expect = 9e-45
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AEML ++ ++ HSERR L + + K+A GL + C
Sbjct: 74 AEMLKDIGAKGTLINHSERRMKLAD----IEKKIARLKELGLTSVVCTN----------- 118
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
V A A + V+A EP IGTG +PAQ + VH +R E
Sbjct: 119 --NVLTTAAAAA-----LEPDVVAVEPPELIGTGIPVSPAQPEVVHGSVR------AVKE 165
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 160
V S R++ G ++ ELAAQ +G L+ SLK +
Sbjct: 166 VNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKAD 205
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
Length = 253
Score = 128 bits (324), Expect = 2e-37
Identities = 74/171 (43%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
A ML ++ ++++GHSERR+L ES++ V K+ + + + C+GE+L+ R+SG
Sbjct: 78 ARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKL 137
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
V+A Q I E +S VV+AYEPVWAIGTG VA+ Q QE H +R L V
Sbjct: 138 KQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLA-KVD 196
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 168
+A + +I+YGGS+ N K++ + PDVDG L+GGASLK EF +II A
Sbjct: 197 ERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQA 247
>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional.
Length = 237
Score = 122 bits (307), Expect = 5e-35
Identities = 66/169 (39%), Positives = 90/169 (53%), Gaps = 13/169 (7%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
A+ML +VILGHSERR+ +E++ + K A+ GL I CVGETLE RE+G T
Sbjct: 78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMT 137
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
V+ EQ K + ++AYEPVWAIG + + E +R + D+ S
Sbjct: 138 KDVLLEQCSNCLPKHGEF---IIAYEPVWAIGGSTIPSNDAIAEAFEIIRSY--DSKS-- 190
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
IIYGGSVN N ++L + + G LVG ASL + F II+
Sbjct: 191 -----HIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQV 234
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
glucose/sucrose-specific transporter subunit IIB;
Provisional.
Length = 355
Score = 104 bits (261), Expect = 3e-27
Identities = 60/154 (38%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVA 62
ML L I V++GHSERR +L E++ +KV AL G + C+GETLEQ+ +
Sbjct: 90 MLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDE 149
Query: 63 VVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQ-AQEVHAELRKWLKDNVSA 119
V+ Q K +S ++ +AYEPVWAIG G + A+ A E HA +++ L + + A
Sbjct: 150 VLRTQLKIGLHGVSAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFE-LFA 208
Query: 120 EVAASTRIIYGGSVNGANCKELAAQPDVDGFLVG 153
E + ++YGGSVN N EL +P +DG +G
Sbjct: 209 EESKKIPVLYGGSVNLENANELIMKPHIDGLFIG 242
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional.
Length = 260
Score = 95.8 bits (238), Expect = 1e-24
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 6/174 (3%)
Query: 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVA 62
ML + V++GHSERR E++ KV AL + CVGETLEQ+ G +
Sbjct: 89 MLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDE 148
Query: 63 VVAEQTKAIAEKISNWDNVVL---AYEPVWAIGTGKV-ATPAQAQEVHAELRKWLKDNVS 118
++ Q K I N D + AYEPVWAIG + A+ A E HA +++ L + +
Sbjct: 149 ILRTQLK-IGLHGINPDQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIE-LF 206
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 172
+ + YGGSVN N EL QP +DG +G ++ + I + K
Sbjct: 207 GDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDADKFFAIIEGILNK 260
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
Length = 223
Score = 31.0 bits (71), Expect = 0.24
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACV 48
E + + ++ HSERR L + + V A GL+ + CV
Sbjct: 78 PEAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCV 121
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed.
Length = 437
Score = 28.9 bits (65), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 93 TGKVATPAQAQEVHAELRKWLKDNVSAEVAASTR 126
TG+V T Q QEV AE +K + NV V + R
Sbjct: 95 TGEVPTQEQVQEVVAEWKK--RQNVPQYVIDAIR 126
>gnl|CDD|99857 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) citrate synthase
(CS)-like. CS catalyzes the condensation of acetyl
coenzyme A (AcCoA) with oxaloacetate (OAA) to form
citrate and coenzyme A (CoA), the first step in the
citric acid cycle (TCA or Krebs cycle). Some CS proteins
function as 2-methylcitrate synthase (2MCS). 2MCS
catalyzes the condensation of propionyl-coenzyme A
(PrCoA) and OAA to form 2-methylcitrate and CoA during
propionate metabolism. The overall CS reaction is
thought to proceed through three partial reactions and
involves both closed and open conformational forms of
the enzyme: a) the carbanion or equivalent is generated
from AcCoA by base abstraction of a proton, b) the
nucleophilic attack of this carbanion on OAA to generate
citryl-CoA, and c) the hydrolysis of citryl-CoA to
produce citrate and CoA. There are two types of CSs:
type I CS and type II CSs. Type I CSs are found in
eukarya, gram-positive bacteria, archaea, and in some
gram-negative bacteria and are homodimers with both
subunits participating in the active site. Type II CSs
are unique to gram-negative bacteria and are
homohexamers of identical subunits (approximated as a
trimer of dimers). This group includes three S.
cerevisiae CS proteins, ScCit1,-2,-3. ScCit1 is a
nuclear-encoded mitochondrial CS with highly specificity
for AcCoA; in addition to having activity with AcCoA, it
plays a part in the construction of the TCA cycle
metabolon. Yeast cells deleted for Cit1 are
hyper-susceptible to apoptosis induced by heat and aging
stress. ScCit2 is a peroxisomal CS involved in the
glyoxylate cycle; in addition to having activity with
AcCoA, it may have activity with PrCoA. ScCit3 is a
mitochondrial CS and functions in the metabolism of
PrCoA; it is a dual specificity CS and 2MCS, having
similar catalytic efficiency with both AcCoA and PrCoA.
The pattern of expression of the ScCIT3 gene follows
that of the ScCIT1 gene and its expression is increased
in the presence of a ScCIT1 deletion. Included in this
group is the Tetrahymena 14 nm filament protein which
functions as a CS in mitochondria and as a cytoskeletal
component in cytoplasm and Geobacter sulfurreducens
(GSu) CS. GSuCS is dimeric and eukaryotic-like; it lacks
2MCS activity and is inhibited by ATP. In contrast to
eukaryotic and other prokaryotic CSs, GSuCIT is not
stimulated by K+ ions. This group contains proteins
which functions exclusively as either a CS or a 2MCS, as
well as those with relaxed specificity which have dual
functions as both a CS and a 2MCS.
Length = 426
Score = 28.0 bits (63), Expect = 2.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 89 WAIGTGKVATPAQAQEVHAELRK 111
W + TG+V T Q E+ E K
Sbjct: 89 WLLLTGEVPTEEQVDELSKEWAK 111
>gnl|CDD|203672 pfam07533, BRK, BRK domain. The function of this domain is
unknown. It is often found associated with helicases and
transcription factors.
Length = 45
Score = 25.7 bits (57), Expect = 2.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 86 EPVWAI--GTGKVATPAQAQEVHAELRKWLKDNVSAEVAAS 124
E V I TGK T A ++ +L +WL++N EV
Sbjct: 6 ERVPVINRKTGKRLTGDDAPKLK-DLERWLQENPGYEVDPR 45
>gnl|CDD|137602 PRK09945, PRK09945, hypothetical protein; Provisional.
Length = 418
Score = 27.4 bits (60), Expect = 4.1
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 92 GTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 151
G G + A+E+ + NV EV + + C L QPD DG
Sbjct: 358 GEGAICLQTSAKEISPDFI-----NVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGI- 411
Query: 152 VGGASLKP 159
GA+L+P
Sbjct: 412 --GATLQP 417
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with
unknown function. A subfamily of glycosyltransferase
family 8 with unknown function: Glycosyltransferase
family 8 comprises enzymes with a number of known
activities; lipopolysaccharide galactosyltransferase
lipopolysaccharide glucosyltransferase 1, glycogenin
glucosyltransferase and inositol
1-alpha-galactosyltransferase. It is classified as a
retaining glycosyltransferase, based on the relative
anomeric stereochemistry of the substrate and product in
the reaction catalyzed.
Length = 257
Score = 27.4 bits (61), Expect = 4.1
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 80 NVVLAYEPVWAIGTGKVATPA-QAQEVHAELRKWLKDNVSAEVAASTRII 128
V A E W G V + Q V KW++ N EV I
Sbjct: 141 GVAGAVETSWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLIT 190
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.370
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,708,353
Number of extensions: 788546
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 38
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)