RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039862
(173 letters)
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 321 bits (824), Expect = e-113
Identities = 92/173 (53%), Positives = 123/173 (71%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
M+ +L + WVILGHSERR + ES+ + +K +AL G+KV+ C+GE LE+RE+G T
Sbjct: 99 PAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHT 158
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
V Q +AI +K +W+N+V+AYEPVWAIGTGK A+ QAQEVH +R +LK+ VS
Sbjct: 159 KDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPA 218
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 173
VA +TRIIYGGSV N EL +PD+DGFLVGGASLKP+F+ II + + +
Sbjct: 219 VADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINARSTALS 271
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 320 bits (822), Expect = e-113
Identities = 107/172 (62%), Positives = 134/172 (77%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
M+ ++ WVILGHSERR + ES++ + +KV +AL GLKVIAC+GETLE+RE+G T
Sbjct: 79 PAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGLKVIACIGETLEEREAGKT 138
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
VV QTKAIA K+++W NVV+AYEPVWAIGTGK ATP QAQ+VH LR+W+ +N+ A+
Sbjct: 139 EEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKTATPQQAQDVHKALRQWICENIDAK 198
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 172
V S RI YGGSV ANCKELA+QPD+DGFLVGGASLKPEF+DII + +
Sbjct: 199 VGNSIRIQYGGSVTAANCKELASQPDIDGFLVGGASLKPEFVDIINARQLVP 250
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia
intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Length = 257
Score = 318 bits (817), Expect = e-112
Identities = 87/176 (49%), Positives = 121/176 (68%), Gaps = 4/176 (2%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
EML ++ + VI+GHSERR ++ E+++ K AL +G+ VI CVGETL++R++ T
Sbjct: 81 VEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRT 140
Query: 61 VAVVAEQTKAIAEKIS----NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDN 116
+ V Q +A+ +++ W VV+AYEPVW+IGTG VATP QA+EVH LRKW +
Sbjct: 141 MEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFVEK 200
Query: 117 VSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 172
V+AE A RIIYGGS NG+N ++L P++DGFLVGGASLKPEF+ +I T +
Sbjct: 201 VAAEGAQHIRIIYGGSANGSNNEKLGQCPNIDGFLVGGASLKPEFMTMIDILTKTR 256
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis,
glycolysis; 2.40A {Rhipicephalus microplus}
Length = 249
Score = 317 bits (815), Expect = e-112
Identities = 99/168 (58%), Positives = 121/168 (72%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
M+ + WVILGHSERR + E + +G+K+ +AL GL VIAC+GE LE RE+G T
Sbjct: 80 PGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGLNVIACIGELLEDREAGRT 139
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
V Q K IA + +W VV+AYEPVWAIGTGK ATP QAQEVH+++R WL NVSA+
Sbjct: 140 EEVCFRQIKHIASNVKDWSKVVIAYEPVWAIGTGKTATPDQAQEVHSKVRNWLSTNVSAD 199
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
VA+ RI YGGSVN NCKEL +PD+DGFLVGGASLKPEF+ II +
Sbjct: 200 VASKVRIQYGGSVNAGNCKELGRKPDIDGFLVGGASLKPEFVQIINAM 247
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas
vaginalis} PDB: 3qsr_A
Length = 255
Score = 317 bits (814), Expect = e-111
Identities = 86/174 (49%), Positives = 112/174 (64%), Gaps = 2/174 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
M+ + I W ILGHSERR +L E ++F+ K +AL G+K+I C GE L +RE+G
Sbjct: 82 VPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENGMKIIYCCGEHLSEREAGKA 141
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
V+ Q + + I WD+VV+AYEP+WAIGTGKVA+ AQE+ +R L V
Sbjct: 142 SEFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVASTQDAQEMCKVIRDILAAKVG 201
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 172
A++A RI+YGGSV NC ELAA PDVDGFLVGGASL+ FI+I+ S K
Sbjct: 202 ADIANKVRILYGGSVKPNNCNELAACPDVDGFLVGGASLEAGFINIVNSNVHSK 255
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washingto niaid, I structural genomics;
1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 317 bits (815), Expect = e-111
Identities = 82/168 (48%), Positives = 116/168 (69%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
EML ++ + ++GHSERR +E++ V +KV L GLK++ C+GE+L +RE+G T
Sbjct: 103 CEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLENGLKIVLCIGESLSERETGKT 162
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
V+ +Q + +S+ N+V+AYEP+WAIGTG VATP QAQE HA +R+++ + +
Sbjct: 163 NDVIQKQLTEALKDVSDLSNLVIAYEPIWAIGTGVVATPGQAQEAHAFIREYVTRMYNPQ 222
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
V+++ RIIYGGSV NC EL D+DGFLVGGASLKP F II+SA
Sbjct: 223 VSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGASLKPTFAKIIESA 270
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A
3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A
3pvf_A 3py2_A 2vfd_A 2vfe_A*
Length = 248
Score = 316 bits (812), Expect = e-111
Identities = 90/168 (53%), Positives = 117/168 (69%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AE+ +L+I +VI+GH ERR +E+++ V +K+ +L LK + C GE+LEQRE T
Sbjct: 80 AEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKT 139
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
+ V+ +Q KA + I N+DNV+L YEP+WAIGTGK ATP QAQ VH E+RK +KD +
Sbjct: 140 IEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEK 199
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A RI+YGGSVN NC L Q D+DGFLVG ASLK F+DIIKSA
Sbjct: 200 QANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the
ligand-free state, conformational heterogeneity,
TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1
PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1*
8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A*
1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Length = 248
Score = 316 bits (811), Expect = e-111
Identities = 113/168 (67%), Positives = 132/168 (78%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
M+ + WV+LGHSERR + ES++ +G KVA+ALS GL VIAC+GE L++RE+G T
Sbjct: 80 PGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGIT 139
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
VV EQTK IA+ + +W VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS
Sbjct: 140 EKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDA 199
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct: 200 VAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 247
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition
state analogue, glycolysis, pentose shunt,
gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A
{Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A
2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A
1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Length = 251
Score = 315 bits (809), Expect = e-111
Identities = 101/170 (59%), Positives = 125/170 (73%), Gaps = 2/170 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
+L ++ + WVILGHSERR E+++ V KV+ A +G VIAC+GETL+QRE+ T
Sbjct: 81 MPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQT 140
Query: 61 VAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VV QT AIA K++ W+ VVLAYEPVWAIGTGKVATP QAQEVH LRKW+ +N+
Sbjct: 141 AKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIG 200
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
+VAA RI+YGGSVN AN L A+PD++GFLVGGASLKPEF DII +
Sbjct: 201 TDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDIIDAT 250
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome,
gluconeogenesis, lipid synthesis, monomeric mutant,
glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Length = 244
Score = 312 bits (801), Expect = e-110
Identities = 94/170 (55%), Positives = 120/170 (70%), Gaps = 2/170 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
L + I WV+LGHSERR E+N+ V +KVA A + G VI CVGET E+RE+G T
Sbjct: 74 LASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRT 133
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
AVV Q A+A+K+S W VV+AYEPVWAIGTGKVATP QAQEVH LR+W++ +
Sbjct: 134 AAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLG 193
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
++AA RI+YGGSV N + L D++GFLVGGASLKPEF++II++
Sbjct: 194 TDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEAT 243
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome,
TIM-barrel, gluconeogenesis, lipid synthesis, atomic
resolution; 1.15A {Trypanosoma brucei brucei} PDB:
2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A
1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A
2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Length = 250
Score = 310 bits (796), Expect = e-109
Identities = 99/170 (58%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
+L + + W++LGHSERRA E+N+ V DKVA A++ G VIAC+GETL++RESG T
Sbjct: 80 LPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRT 139
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VV Q AIA+K+ +W VV+AYE VWAIGTGKVATP QAQE HA +R W+ +
Sbjct: 140 AVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIG 199
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A+VA RI+YGGSVNG N + L Q DV+GFLVGGASLKPEF+DIIK+
Sbjct: 200 ADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKAT 249
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability;
1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Length = 261
Score = 308 bits (791), Expect = e-108
Identities = 105/174 (60%), Positives = 126/174 (72%), Gaps = 3/174 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
MLV+ +P+VILGHSERR + +ESN+ V +KV A+ GLKVIAC+GET QR + T
Sbjct: 87 VGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQT 146
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VVA Q KAI IS W N++LAYEPVWAIGTGK ATP QAQEVH +RKW+ +N+S
Sbjct: 147 EEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENIS 206
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVK 171
EVA +TRI YGGSVN ANC ELA + D+DGFLVGGASL +F II S + K
Sbjct: 207 KEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKFKTIINSVSEK 260
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 290 bits (746), Expect = e-101
Identities = 83/170 (48%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
ML + + +VI+GHSERR + E ++F+ KV L +G+ I CVGETLE+RE G T
Sbjct: 81 PLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLT 140
Query: 61 VAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VV +Q + + VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +
Sbjct: 141 FCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYD 200
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
E A S RI+YGGS+ N L Q D+DG LVGGASLK FI++ +
Sbjct: 201 EETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELARIM 250
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A
{Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Length = 255
Score = 290 bits (745), Expect = e-101
Identities = 82/176 (46%), Positives = 108/176 (61%), Gaps = 4/176 (2%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
A ML ++ ++I+GHSERR ES++ + K A +GL + C+GET + E+G T
Sbjct: 80 AAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKT 139
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
V A Q A+ + ++ V+AYEPVWAIGTGK ATPAQAQ VH +R + V
Sbjct: 140 EEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVD 198
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKKN 173
A +A I YGGSVN +N EL AQPD+DG LVGGASLK + F I+K+A K
Sbjct: 199 ANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQ 254
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 279 bits (717), Expect = 5e-97
Identities = 84/168 (50%), Positives = 119/168 (70%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
+ + ++ +VILGHSERR+ +E + F+ DK +AL +G+ VI C+GETLE++++G T
Sbjct: 79 VDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKT 138
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
+ VV Q A+ E++ ++ NVV+AYEPV AIGTG ATP AQ++HA +RK+L + +
Sbjct: 139 LDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAATPEDAQDIHASIRKFLASKLGDK 198
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A+ RI+YGGS NG+N + DVDGFLVGGASLKPEF+DII S
Sbjct: 199 AASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINSR 246
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis,
pentose; HET: CIT; 1.90A {Staphylococcus aureus}
Length = 254
Score = 273 bits (702), Expect = 1e-94
Identities = 79/171 (46%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
L +L + +V++GHSERR L +E+++ + K G+ I CVGET E+RESG
Sbjct: 83 PVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKA 142
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VV EQ K +S +VV+AYEP+WAIGTGK +T A E+ A +R+ + D S
Sbjct: 143 NDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSS 202
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
EV+ +TRI YGGSV N KE AQ D+DG LVGGASLK E F+ +++ A
Sbjct: 203 KEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA 253
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A
{Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Length = 256
Score = 269 bits (690), Expect = 9e-93
Identities = 74/175 (42%), Positives = 99/175 (56%), Gaps = 4/175 (2%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
ML +I+GHSERR ES++FV K A+ GL + C+GE+ Q E+G T
Sbjct: 82 PAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGET 141
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
+AV A Q A+ + ++AYEP+WAIGTGK AT AQ +HA++R + + S
Sbjct: 142 MAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-S 200
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 172
VA + I YGGSV N AQPD+DG LVGGA+L + F I K+A K
Sbjct: 201 EAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAK 255
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 268 bits (687), Expect = 1e-92
Identities = 64/169 (37%), Positives = 91/169 (53%), Gaps = 14/169 (8%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
++ L L I +++GHSERR LL ES F+ +K + S+ K++ C+GE L RE G
Sbjct: 74 SKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIVYCIGEELTTREKGFK 133
Query: 61 V--AVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
++EQ + I N+ N+V+AYEP+WAIGT K A+ H L++ L
Sbjct: 134 AVKEFLSEQLENIDL---NYPNLVVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQKT- 189
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIK 166
++YGGSVN N KE+ VDG L+G AS + E F II
Sbjct: 190 -------PLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELENFKTIIS 231
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium
tuberculosis} PDB: 3tao_A* 3gvg_A
Length = 267
Score = 260 bits (668), Expect = 2e-89
Identities = 80/171 (46%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
L L +V++GHSERR NE + V K A AL GL I C+GE L+ RE+G+
Sbjct: 85 GAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNH 144
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VA EQ + + +VV+AYEPVWAIGTG+VA+ A AQEV A +RK L S
Sbjct: 145 VAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLAS 204
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
+A + R++YGGSVN N ++ AQ DVDG LVGGASL E F + A
Sbjct: 205 PRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIA 255
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW,
gluconeogenesis, glycolysis, pentose shunt; 1.60A
{Bartonella henselae}
Length = 275
Score = 260 bits (668), Expect = 3e-89
Identities = 70/169 (41%), Positives = 94/169 (55%), Gaps = 2/169 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
A ML VI+GHSERR + ES+ V KV A GL + CVGETLE+R+S
Sbjct: 105 AFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLVALICVGETLEERKSNKV 164
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
+ V+ Q + + +N+++AYEPVWA+GTG AT A EVHA + + E
Sbjct: 165 LDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFGDE 224
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
A R++YGGSV +N EL + V+G L+GGASLK F+ I
Sbjct: 225 -GAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLKAIDFLTICDVY 272
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic
triose-phosphate, glycolysis; 2.40A {Geobacillus
stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Length = 252
Score = 258 bits (663), Expect = 1e-88
Identities = 75/171 (43%), Positives = 104/171 (60%), Gaps = 3/171 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
ML +L + +VILGHSERR + E+++ V KV A +RGL I C GE+LE+RE+G T
Sbjct: 79 PVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQT 138
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
AVVA Q + ++ V+AYEP+WAIGTGK +TP A V +R +
Sbjct: 139 NAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFG 198
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
E A + RI YGGSV N ++ AQ +DG LVGGASL+P F+ ++++
Sbjct: 199 PEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLVEAG 249
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom
initiative, RSGI, structural genomics; 1.60A {Thermus
thermophilus}
Length = 250
Score = 258 bits (662), Expect = 1e-88
Identities = 75/171 (43%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
A ML +L + I+GHSERR E++ V +K L G+ I CVGE LE RE G
Sbjct: 79 ARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEA 138
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
V Q + E + + +V+AYEPVWAIGTGK ATP A+ +H +RK L +
Sbjct: 139 VPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYG 198
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
A+ RI+YGGSVN N +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct: 199 EAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 253 bits (647), Expect = 1e-85
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGET-----LEQR 55
L ++++ V LGH+ERRA+ E++ V K A A +GL + C+GE +
Sbjct: 133 PVCLRDMNVSIVELGHAERRAIFGETDQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSE 192
Query: 56 ESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKD 115
G V Q + + E + V+ AYEPVWAIG + A V + +R ++
Sbjct: 193 AIGRAVGECEAQIRPVLEALPRDAPVIFAYEPVWAIGKPQPARVDHVGAVVSGIRSVIER 252
Query: 116 NVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
+ RI+YGGS +VDG +G + E +++
Sbjct: 253 -IDRHRKGEVRILYGGSAGPGLWGPGGLGKEVDGMFLGRFAHDIEGVRKVVREV 305
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel, TPIA; 2.35A {Burkholderia thailandensis}
Length = 272
Score = 250 bits (642), Expect = 3e-85
Identities = 84/171 (49%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
A M+ + I+GHSERRA ESN+ V K AL+ GL I CVGETL +RE+G+T
Sbjct: 105 AGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALAAGLTPIVCVGETLAEREAGTT 164
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VV Q A+ +S +V+AYEPVWAIGTGK AT QAQ+VHA LR L +
Sbjct: 165 EQVVGAQLDAVLAVLSPDEAARIVVAYEPVWAIGTGKSATAEQAQQVHAFLRGRL----A 220
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
A+ A ++YGGSV N EL QPD+DG L+GGASLK F+ I ++A
Sbjct: 221 AKGAGHVSLLYGGSVKADNAAELFGQPDIDGGLIGGASLKSGDFLAICRAA 271
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 189 bits (483), Expect = 8e-62
Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 30/175 (17%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
E + VIL HSE LN+ VA A S GL V+ C + + +
Sbjct: 78 LENIKEAGGSGVILNHSEAPLKLNDLAR----LVAKAKSLGLDVVVCAPDPRTSLAAAA- 132
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
+A EP IGTG+ + + + + + +
Sbjct: 133 -----------------LGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGL------VSR 169
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE--FIDIIKSATVKKN 173
+I G + + A + G L+ A++K + + I++ A
Sbjct: 170 HFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE 224
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 186 bits (475), Expect = 1e-60
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 29/169 (17%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AE + + ++ HSE+R LL + + + GL+ I C +
Sbjct: 75 AEAIKDCGCKGTLINHSEKRMLLADIEA----VINKCKNLGLETIVCTNNINTSKA---- 126
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
++ +A EP IGTG + A + V +R E
Sbjct: 127 --------------VAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAV------KE 166
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
+ +++ G ++ + A +G L+ +K + + I+
Sbjct: 167 INKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIREL 215
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 175 bits (446), Expect = 3e-56
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 29/168 (17%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
E + +L HSE R +L + + A GL + C
Sbjct: 81 PEAVKEAGAVGTLLNHSENRMILADLEA----AIRRAEEVGLMTMVCSNNPAVSAA---- 132
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
++ + +A EP IGTG + A+ + + + +
Sbjct: 133 --------------VAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVEL------VKK 172
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 167
V +++ G ++ + A + G L+ K + I
Sbjct: 173 VNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWD 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-05
Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 45/148 (30%)
Query: 16 HSERRALLNESN-----DFVGDKVAYALSRGLKVIACV-----GETLEQRESGSTVAVVA 65
HS LL ++ D V + V++ ++ I V G L + SGS +
Sbjct: 428 HSH---LLVPASDLINKDLVKNNVSFNAKD-IQ-IP-VYDTFDGSDL-RVLSGSISERIV 480
Query: 66 EQTKAIAEKISNWDNVVLAYEPVWAI--GTGKVATPAQAQEVHAELRKWLKDNVSAEVAA 123
+ I W+ ++ + G G + L KD
Sbjct: 481 DC---IIRLPVKWETTT-QFKATHILDFGPGGASG-------LGVLTHRNKD------GT 523
Query: 124 STRIIYGGSVNGANCKELAAQPDVD-GF 150
R+I G+++ PD D GF
Sbjct: 524 GVRVIVAGTLD--------INPDDDYGF 543
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote
structure initiative, joint center for structural
genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Length = 341
Score = 29.9 bits (67), Expect = 0.39
Identities = 15/139 (10%), Positives = 37/139 (26%), Gaps = 36/139 (25%)
Query: 20 RALLNESNDFVGDK---------VAYALSRGLKVI---------ACVGETLEQR---ESG 58
+ N F+ + + + G+ + + E E+ +
Sbjct: 60 LLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISLHRAPGYSVNKEVEEKTNLWKDE 119
Query: 59 STVAVVAEQTKAIAEKISNWDNVVLAY----EPVWAIGTGKVATPAQAQEVHAELRKWLK 114
+ IA + + L++ EP + P + +K
Sbjct: 120 TAQEAFIHHWSFIARRYKGISSTHLSFNLINEPPF---------PDPQIMSVEDHNSLIK 170
Query: 115 DNVSA--EVAASTRIIYGG 131
++ ++ II G
Sbjct: 171 RTITEIRKIDPERLIIIDG 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.1
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 3 MLV---NLSIPWVILGHSERRALLNESND-FVGDKVAYALSRGL--KVIACVGETL-EQR 55
+L+ + + + L+ + D+ + L K + C + L +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-----VKSLLLKYLDCRPQDLPREV 322
Query: 56 ESGS--TVAVVAEQTKAIAEKISNWDNV 81
+ + ++++AE + NW +V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHV 350
>3s93_A Tudor domain-containing protein 5; structural genomics
consortium, SGC, transcription; 2.28A {Homo sapiens}
Length = 102
Score = 26.4 bits (58), Expect = 2.4
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 22/77 (28%)
Query: 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV- 61
++V +P ILG+ L+ + D V + G+ +
Sbjct: 38 LMVGNHLPLRILGYRSTMELVLDMPDVV--------------------RVCPGAGGTVIL 77
Query: 62 -AVVAEQTKAIAEKISN 77
A+ E TK IA ++
Sbjct: 78 KAIPDESTKGIASLVAK 94
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, STR genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 26.5 bits (58), Expect = 3.2
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 86 EPVWAIGTGKVATPAQAQEVHAELRKWLKDN 116
PVW + + Q + LR+ +
Sbjct: 111 RPVWGVMQPLAHDATEVQNFISALRRKIWLG 141
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; 1.50A {Vibrio fischeri ES114}
Length = 149
Score = 26.2 bits (57), Expect = 4.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 86 EPVWAIGTGKVATPAQAQEVHAELRKWLKD 115
PVW TG + + ++ LR L +
Sbjct: 106 GPVWGNTTGVIRAQSSQTQLVDLLRDKLSN 135
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 26.1 bits (58), Expect = 6.8
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 37 ALSRGLKVIACVG--ETLEQ-----RESGSTVAVVAEQ--TKAIAEKISNWDNVVLAYEP 87
A + GL+ I V +++ + G+ + E+ + + LA
Sbjct: 188 AAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNC 247
Query: 88 VWAIGTGKVATPA 100
V G GK +T
Sbjct: 248 V---G-GKSSTEL 256
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 25.9 bits (57), Expect = 8.4
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 9 IPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVA 65
+ + + + D +K AL + E++ GST +VVA
Sbjct: 74 MHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESVAPETVGST-SVVA 129
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 9.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 86 EPVWAIGTGKVATPAQAQEVHAELRKWLKDN------VSAEVAASTRIIYGGSVNGANCK 139
PV A G + + +E A+LRK L + VS E A +++ G S + A
Sbjct: 721 SPVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAY-A 779
Query: 140 ELAAQP 145
++ QP
Sbjct: 780 QVEIQP 785
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.370
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,645,620
Number of extensions: 152638
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 51
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.5 bits)