RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 039862
(173 letters)
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 246
Score = 156 bits (394), Expect = 8e-49
Identities = 113/167 (67%), Positives = 132/167 (79%)
Query: 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV 61
M+ + WV+LGHSERR + ES++ +G KVA+ALS GL VIAC+GE L++RE+G T
Sbjct: 79 GMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITE 138
Query: 62 AVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV 121
VV EQTK IA+ + +W VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS V
Sbjct: 139 KVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAV 198
Query: 122 AASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct: 199 AQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 245
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 257
Score = 147 bits (372), Expect = 2e-45
Identities = 92/167 (55%), Positives = 121/167 (72%)
Query: 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV 61
M+ +L + WVILGHSERR + ES+ + +K +AL G+KV+ C+GE LE+RE+G T
Sbjct: 88 AMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTK 147
Query: 62 AVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV 121
V Q +AI +K +W+N+V+AYEPVWAIGTGK A+ QAQEVH +R +LK+ VS V
Sbjct: 148 DVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAV 207
Query: 122 AASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A +TRIIYGGSV N EL +PD+DGFLVGGASLKP+F+ II +
Sbjct: 208 ADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINAR 254
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
[TaxId: 2336]}
Length = 252
Score = 146 bits (370), Expect = 4e-45
Identities = 83/168 (49%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Query: 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVA 62
ML + + +VI+GHSERR + E ++F+ KV L +G+ I CVGETLE+RE G T
Sbjct: 82 MLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFC 141
Query: 63 VVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
VV +Q + + VV+AYEPVWAIGTG+VATP QAQEVHA +RK L + E
Sbjct: 142 VVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEE 201
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A S RI+YGGS+ N L Q D+DG LVGGASLK FI++ +
Sbjct: 202 TAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELARIM 249
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 247
Score = 146 bits (369), Expect = 6e-45
Identities = 85/166 (51%), Positives = 120/166 (72%)
Query: 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV 61
+ + ++ +VILGHSERR+ +E + F+ DK +AL +G+ VI C+GETLE++++G T+
Sbjct: 80 DQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTL 139
Query: 62 AVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV 121
VV Q A+ E++ ++ NVV+AYEPVWAIGTG ATP AQ++HA +RK+L + +
Sbjct: 140 DVVERQLNAVLEEVKDFTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKA 199
Query: 122 AASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 167
A+ RI+YGGS NG+N + DVDGFLVGGASLKPEF+DII S
Sbjct: 200 ASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 245
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
[TaxId: 5665]}
Length = 249
Score = 146 bits (369), Expect = 6e-45
Identities = 101/170 (59%), Positives = 125/170 (73%), Gaps = 2/170 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
+L ++ + WVILGHSERR E+++ V KV+ A +G VIAC+GETL+QRE+ T
Sbjct: 79 MPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQT 138
Query: 61 VAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VV QT AIA K++ W+ VVLAYEPVWAIGTGKVATP QAQEVH LRKW+ +N+
Sbjct: 139 AKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIG 198
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
+VAA RI+YGGSVN AN L A+PD++GFLVGGASLKPEF DII +
Sbjct: 199 TDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDIIDAT 248
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 144 bits (364), Expect = 2e-44
Identities = 90/168 (53%), Positives = 117/168 (69%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
AE+ +L+I +VI+GH ERR +E+++ V +K+ +L LK + C GE+LEQRE T
Sbjct: 78 AEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKT 137
Query: 61 VAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
+ V+ +Q KA + I N+DNV+L YEP+WAIGTGK ATP QAQ VH E+RK +KD +
Sbjct: 138 IEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEK 197
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A RI+YGGSVN NC L Q D+DGFLVG ASLK F+DIIKSA
Sbjct: 198 QANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 245
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei
[TaxId: 5691]}
Length = 249
Score = 143 bits (361), Expect = 9e-44
Identities = 99/170 (58%), Positives = 123/170 (72%), Gaps = 2/170 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
+L + + W++LGHSERRA E+N+ V DKVA A++ G VIAC+GETL++RESG T
Sbjct: 79 LPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRT 138
Query: 61 VAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VV Q AIA+K+ W VV+AYEPVWAIGTGKVATP QAQE HA + W+ +
Sbjct: 139 AVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALISSWVSSKIG 198
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 168
A+VA RI+YGGSVNG N + L Q DV+GFLVGGASLKPEF+DIIK+
Sbjct: 199 ADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKAT 248
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 142 bits (358), Expect = 3e-43
Identities = 105/174 (60%), Positives = 125/174 (71%), Gaps = 3/174 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
MLV+ +P+VILGHSERR + +ESN+ V +KV A+ GLKVIAC+GET QR + T
Sbjct: 86 VGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQT 145
Query: 61 VAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
VVA Q KAI IS W N++LAYEPVWAIGTGK ATP QAQEVH +RKW+ +N+S
Sbjct: 146 EEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENIS 205
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVK 171
EVA +TRI YGGSVN ANC ELA + D+DGFLVGGASL F II S + K
Sbjct: 206 KEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKFKTIINSVSEK 259
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 251
Score = 138 bits (349), Expect = 6e-42
Identities = 75/171 (43%), Positives = 104/171 (60%), Gaps = 3/171 (1%)
Query: 1 AEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGST 60
ML +L + +VILGHSERR + E+++ V KV A +RGL I C GE+LE+RE+G T
Sbjct: 79 PVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQT 138
Query: 61 VAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS 118
AVVA Q + ++ V+AYEP+WAIGTGK +TP A V +R +
Sbjct: 139 NAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFG 198
Query: 119 AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 168
E A + RI YGGSV N ++ AQ +DG LVGGASL+P F+ ++++
Sbjct: 199 PEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLVEAG 249
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 128 bits (322), Expect = 6e-38
Identities = 81/174 (46%), Positives = 107/174 (61%), Gaps = 4/174 (2%)
Query: 3 MLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVA 62
ML ++ ++I+GHSERR ES++ + K A +GL + C+GET + E+G T
Sbjct: 82 MLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEE 141
Query: 63 VVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAE 120
V A Q A+ + ++ V+AYEPVWAIGTGK ATPAQAQ VH +R + V A
Sbjct: 142 VCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDAN 200
Query: 121 VAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKKN 173
+A I YGGSVN +N EL AQPD+DG LVGGASLK + F I+K+A K
Sbjct: 201 IAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQ 254
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus
[TaxId: 90736]}
Length = 255
Score = 127 bits (319), Expect = 2e-37
Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 4/174 (2%)
Query: 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV 61
ML +I+GHSERR ES++FV K A+ GL + C+GE+ Q E+G T+
Sbjct: 82 AMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETM 141
Query: 62 AVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSA 119
AV A Q A+ + + ++AYEP+WAIGTGK AT AQ +HA++R + + S
Sbjct: 142 AVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SE 200
Query: 120 EVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 172
VA + I YGGSV N AQPD+DG LVGGA+L + F I K+A K
Sbjct: 201 AVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAK 254
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 85.0 bits (209), Expect = 2e-21
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 30/169 (17%)
Query: 2 EMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTV 61
E + VIL HSE LN+ VA A S GL V+ C +
Sbjct: 79 ENIKEAGGSGVILNHSEAPLKLNDLAR----LVAKAKSLGLDVVVCAPDPRTSLA----- 129
Query: 62 AVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEV 121
+ +A EP IGTG+ + + + + + +
Sbjct: 130 -------------AAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHF----- 171
Query: 122 AASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE--FIDIIKSA 168
+I G + + A + G L+ A++K + + I++ A
Sbjct: 172 -PEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELA 219
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 75.0 bits (183), Expect = 1e-17
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 63 VVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVA 122
+V A++ ++ + +A EP IGTG + A+ + + + +V
Sbjct: 120 MVCSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELV------KKVN 173
Query: 123 ASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 167
+++ G ++ + A + G L+ K + I
Sbjct: 174 PEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWD 219
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding
protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 27.5 bits (61), Expect = 0.27
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 87 PVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVA 122
PV GK A A + +L +WL++N VA
Sbjct: 20 PVVNKRNGKKMGGAMAPPMK-DLPRWLEENPEFAVA 54
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 25.9 bits (57), Expect = 0.67
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 87 PVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVA 122
PV G + A EL WL+ + V
Sbjct: 10 PVINKVDGTLLVGEDAPRRA-ELEMWLQGHPEFAVD 44
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506
{Methylobacillus flagellatus [TaxId: 405]}
Length = 139
Score = 25.2 bits (54), Expect = 3.7
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 87 PVWAIGTGKVATPAQAQEVHAELRKWLK 114
VW + A Q L+K +
Sbjct: 108 SVWGETKRESLPQALDQGSTTALKKAIS 135
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific
methyltransferase SET7/9 N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 24.0 bits (52), Expect = 4.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 22 LLNESNDFVGDKVAY 36
+NE + G+K+AY
Sbjct: 17 EVNEDGEMTGEKIAY 31
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1
{Leishmania major [TaxId: 5664]}
Length = 131
Score = 24.7 bits (54), Expect = 4.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 21 ALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVA 65
A N++ + V + + A LEQ+E+G VA V
Sbjct: 49 AYYNDTTQYEM-HVLVTFNEDCDIKALGKTKLEQQENGEWVASVV 92
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 261
Score = 25.3 bits (54), Expect = 4.1
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 73 EKISNWDNVVLAYEPVWAIGTGKV 96
+ ++N D+V+ Y+ +++ KV
Sbjct: 5 DILTNIDDVLPYYQAIFSAEEQKV 28
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 24.9 bits (54), Expect = 6.7
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 67 QTKAIAEKISNWDNVVLAYEPV 88
+ +A S + EP+
Sbjct: 22 TGRVMASAASGGSPTLYFPEPM 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.370
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,940
Number of extensions: 25371
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 22
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)